CN102584967B - Anti-soybean mosaic virus (SMV) protein in soybean and coding gene Rsv3C and application thereof - Google Patents

Anti-soybean mosaic virus (SMV) protein in soybean and coding gene Rsv3C and application thereof Download PDF

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CN102584967B
CN102584967B CN201110452700.0A CN201110452700A CN102584967B CN 102584967 B CN102584967 B CN 102584967B CN 201110452700 A CN201110452700 A CN 201110452700A CN 102584967 B CN102584967 B CN 102584967B
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glu
soybean
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CN102584967A (en
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王斌
陈建群
程浩
喻德跃
冯雪影
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Nanjing University
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Nanjing University
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Abstract

The invention discloses an anti-soybean mosaic virus (SMV) protein in soybean and a coding gene Rsv3C and application thereof. The amino acid sequence of the protein is shown as SEQ ID NO. 1. The nucleotide sequence of the gene is shown as SEQ ID NO. 2. The cloned Rsv3C functional anti-SMV gene can be used as a target gene and introduced into high-yield soybean varieties; and the R protein coded by the gene can identify effect factors released by corresponding SMV pathogens and excite resistance response, so that the disease resistance of plants is improved and the aim of improving plant varieties is fulfilled.

Description

Anti-SMV albumen and encoding gene Rsv3C and application in the soybean
Technical field
The invention belongs to biological technical field, be specifically related to anti-SMV albumen and encoding gene Rsv3C and their application in cultivating anti-SMV soybean in the soybean.
Background technology
Soybean is important plant protein and food oils source, but (Soybean Mosaic Virus, SMV) caused soybean mosaic is one of the most serious soybean diseases that generally takes place in worldwide by soybean mosaic virus.In each soybean producing region of China, annual SMV all causes the harm of certain degree, and along with the differentiation of viral toxicity is strengthened, production loss has the trend that increases the weight of year by year.For example the dish that " inferior vegetables " are introduced from Taiwan almost has no harvest with many areas of soybean varieties " Taiwan 75 " with regard to Ceng Yinwei severe infections soybean mosaic virus two provinces in the Jiangsu and Zhejiang Provinces.SMV not only reduces soybean yields, and causes seed mottled, influences the exterior quality of soybean, directly threatens the beans farming and increases income and national agriculture safety.No matter still external at home, prevent and treat soybean mosaic is to ensure that soybean continues a preferential research topic of producing always, but does not still have the control that beneficial agents is used for SMV at present.Developing rapidly of Protocols in Molecular Biology makes to filter out the not available functional disease-resistant gene of perceptual kind that from the soybean resistant variety utilizing it to carry out soybean molecular breeding then becomes possibility.This is a kind of splendid prevention and cure of viruses strategy, also is to cultivate the most cost-effective ways disease-resistant, the high quality soybean new variety.
Summary of the invention
The technical problem that solves:The present invention is directed to above-mentioned technological gap, anti-SMV albumen and encoding gene Rsv3C thereof in a kind of soybean are provided, and their application in cultivating anti-SMV soybean are provided.
Technical scheme:
Anti-SMV albumen in the soybean, the aminoacid sequence of this albumen is as described in the SEQ ID NO. 1.
The encode gene Rsv3C of anti-SMV albumen in the above-mentioned soybean, the nucleotide sequence of this gene is as described in the SEQ ID NO. 2.
The recombinant plasmid that comprises above-mentioned nucleotide sequence.
The host's carrier that comprises above-mentioned recombinant plasmid.
The application of above-mentioned aminoacid sequence in cultivating anti-SMV soybean.
Above-mentioned nucleotides sequence is listed in the application of cultivating in the anti-SMV soybean.
Beneficial effect:
The present invention clone's the functional anti-SMV gene of Rsv3C, can be used as goal gene and import more high yielding soybeans kinds, its coded R albumen can be identified the effector of corresponding SMV cause of disease release and excite the resistance reaction, improves the resistance against diseases of plant, reaches the purpose of plant species improvement.
Carry the anti-SMV gene of Rsv3C function of the present invention plant expression vector can Ti-plasmids, Ri plasmid, plant viral vector, dna direct conversion, microinjection, electricity be led, conventional biological method transformed plant cells or tissue such as agriculture bacillus mediated by using, and the plant transformed tissue cultivating is become plant.Improve the accuracy of breeding and accelerate breeding process, satisfy and produce the requirement of going up varietal resistance, the harm of control SMV improves the yield and quality of soybean, strengthens the market competitiveness of homemade soybean.In addition, by fast prediction, screening, the definite research that reaches the clone to the anti-SMV functional gene of soybean, also can provide a kind of new technology and service platform for other disease-resistant gene research, promote the development of soybean function gene clone new technology.
Description of drawings
Fig. 1 is 5 NBS-LRR type disease-resistant gene position synoptic diagram between molecule marker A519 and M3Satt on No. 14 karyomit(e)s of soybean, difference called after Rsv3-A, B, C, D, E;
Fig. 2 is at the special zone design primer of the upstream and downstream of each gene, is used for whole coding regions (comprising an intron zone) of amplification corresponding gene;
Fig. 3 analyzes after for the sequence that obtains Rsv3 go up each gene from anti-, sense kind soybean, constructing system develops and sets, discovery has only the Rsv3C gene to distinguish cluster separately between anti-sense kind, and great changes will take place for the sequence of resistant variety, detect tangible forward selective action, its evolutionary pattern meets the feature of functioning gene; Other gene does not then possess these features, fails between anti-sense kind cluster separately as the Rsv3B gene, and sequence difference is little, also detects less than the forward selective action;
Fig. 4 is that the analysis of protein 3D structural simulation shows, last figure is perceptual kind, figure below is resistant variety: compare with the Rsv3C in the perceptual kind, noticeable change has taken place at the function cog region (LRR zone) of C-end in the Rsv3C product in the resistant variety precocity 18, not obvious in the resistance protein product as some the loose loop zones (arrow) in the perceptual albumen, even disappear.Thereby the virokine that identification SMV virus discharges, and excite resistance.
The transgene clone carrier pBA002 that Fig. 5 selects for use for us has been connected to the Rsv3C gene that separates in the resistant variety precocity 18 in this carrier, and the result of plasmid extraction and PCR checking result are all positive.M1 is the 15kb molecule marker among the figure; 1 plasmid (the containing Rsv3C) gene for extracting after the successful connection; The 2 Rsv3C fragments that obtain for PCR checking; M2 is the 8kb molecule marker.
Fig. 6 utilizes agriculture bacillus mediated cotyledonary node method, and precocious 18-Rsv3C gene is imported to the transfer-gen plant that produces after the high sense kind, and its blade shows as resistance to soybean mosaic virus.
Embodiment
Below by the present invention of embodiment more detailed description, but the present invention is not limited by the following examples.
Embodiment 1:
Obtain functional gene:
(1) utilizes soybean Williams82 genomic data (http://soybase.org/), obtain the 153kb sequence that molecule marker A519 and M3Satt limit on No. 14 karyomit(e).Then with the standard construction territory sequence NB-ARC(PF00931 in the Pfam database (http://pfam.janelia.org/)) be reference, to the search of comparing of this 153kb sequence, find the gene that contains the NBS functional domain.Compare two kinds of methods by predictive genes instrument FGENESH and ordering, determine the total length zone of this gene, comprise number and the position of exon, intron.With its called after Rsv3 C.
(2) by software Oligo6, design the Auele Specific Primer (Fig. 2) of Rsv3C, primer sequence is:
Upstream CGGAATTCCGAGCGACAAGTCATGGTAT;
Downstream TCCCCGCGGGGATATGAGGGGTGTTAGTGTCTGA;
(3) gather about blades 5 grams the back manufacturing soybean precocity 18, two week, adopts improved CTAB method to extract genomic dna, and with concentration and the purity of 0.8% agarose gel electrophoresis and UV spectrophotometer measuring gained DNA.Be template (concentration is controlled to be 20ng/ μ L) with the genomic dna, utilize the Auele Specific Primer that (2) step designed, adopt LA-Taq enzyme and the matched reagent of TAKARA company, with Long-PCR method amplification NBS-LRR type candidate gene Rsv3C.The PCR program of using is: 94 ℃ of pre-sex change 5 minutes, and 94 ℃ of sex change 30 seconds, 56 ℃ of renaturation 45 seconds, 68 ℃ were extended 7 minutes, totally 30 circulations, 68 ℃ of renaturation 10 minutes, 12 ℃ of constant temperature subsequently.The PCR system of using is 25 microlitre systems: comprise 15.2 microlitre deionized waters, 2.5 microlitres, 10 * LA PCR Buffer, 2.5 microlitre MgCl 2, 2.5 microlitre dNTP(20mM), 1 microlitre upstream special primer, 1 microlitre downstream special primer, and 0.3 microlitre LA Taq enzyme.After the reaction, the product of pcr amplification is carried out the agarose gel electrophoresis purifying, send order-checking company (Nanjing Genscript Biotechnology Co., Ltd.) to measure its nucleotide sequence then.
(4) select transgene clone carrier pBA002 for use; take double-enzyme method with restriction enzyme EcoRI and SacII carrier to be cut into wire; again with the Rsv3C upstream and downstream primer that has restriction enzyme site (contain protection base) with Rsv3C gene amplification purifying after; adopt T4 ligase enzyme (TAKARA company) to be connected in the carrier, obtain pBA002-Rsv3C.Clone successfully for guaranteeing to connect, we have carried out necessary plasmid extraction and PCR checking, and the result is positive (Fig. 5) all.
Functional checking:
(5) then take agriculture bacillus mediated cotyledonary node method, the Rsv3C gene is transferred in the high sense kind (Williams): change pBA002-Rsv3C over to agrobacterium tumefaciens bacterial strain EHA105(Avsian-Kretchmer et al with freeze-thaw method, 2004, Plant Physiology, 135:1685-1696) in.PBA002-Rsv3C transforms high sense kind by the mediation of Agrobacterium strain EHA105, utilizes antibiotic-screening and round pcr to screen positive transfer-gen plant.After waiting to induce the indefinite bud growth of generation and producing blade, it is carried out soybean mosaic virus infect.The incidence of 2 weeks back detection transgenic seedling blade is found not fall ill substantially, compares with the sickness rate that non-transgenic contrast plant height reaches more than 80%, and resistance is (Fig. 6) extremely significantly.This shows originally soybean mosaic virus is shown as susceptible height sense kind because having changed the Rsv3C gene of our screening over to, and has possessed the ability of resisting soybean mosaic virus.
Sequence table
<110〉Nanjing University
<120〉anti-SMV albumen and encoding gene Rsv3C and application in the soybean
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aaccacaaca gcaagtttga gccattttct aagattgccg aacttccagg catgaagtac 420
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caaatatttg attcaggtga tgcacaaacc ctatatactt gttcacaaca agtgtgcttc 3540
ccaaatctcc attatatttg tgtcgaaaag tgcaacaagt tgaaatacct ttttcataat 3600
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ttcaaagaga ttcaccatgg attcaagtta aaagatgatg ttgaagaaca tatcataaat 3840
gattgtccta aatattatcc aagtttatat ctacacacag gtacaattct catgtccttt 3900
tactag 3906
<210> 3
<211> 28
<212> DNA
<213〉artificial sequence
<400> 3
cggaattccg agcgacaagt catggtat 28
<210> 4
<211> 34
<212> DNA
<213〉artificial sequence
<400> 4
tccccgcggg gatatgaggg gtgttagtgt ctga 34

Claims (5)

1. (aminoacid sequence that it is characterized in that this albumen is as described in the SEQ ID NO. 1 for Soybean Mosaic Virus, albumen SMV) for Chinese People's Anti-Japanese Military and Political College's bean mosaic virus in the soybean.
2. (nucleotide sequence that it is characterized in that this gene is as described in the SEQ ID NO. 2 for Soybean Mosaic Virus, SMV) the gene Rsv3C of albumen for Chinese People's Anti-Japanese Military and Political College's bean mosaic virus in the coding claim 1 described soybean.
3. the recombinant plasmid that comprises the described nucleotide sequence of claim 2.
4. the host bacterium that comprises the described recombinant plasmid of claim 3.
5. (Soybean Mosaic Virus, albumen SMV) is being cultivated the Chinese People's Anti-Japanese Military and Political College bean mosaic virus (Soybean Mosaic Virus, SMV) application in the soybean to the described Chinese People's Anti-Japanese Military and Political College of claim 1 bean mosaic virus.
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