Summary of the invention
The inventor separates from rural area soil and has obtained a kind of new microorganism strains, and it can be converted into D (-)-tartrate or its salt with cis-form epoxy succinic acid or its salt.This bacterial strain is preserved in China Committee for Culture Collection of Microorganisms common micro-organisms preservation center on June 11st, 2007, and preserving number is CGMCC No.2075.
One of purpose of the present invention provides a kind of microorganism that cis-form epoxy succinic acid or its salt can be converted into D (-)-tartrate or its salt.
Another object of the present invention provides a kind of microorganism with 16SrDNA sequence consistent with SEQ ID NO:1 sequence.
Microorganism provided by the invention is Bordetella BK-52 (Bordetella sp.BK-52).
Microorganism provided by the invention is the Bordetella with preserving number CGMCC No.2075.
The present invention also provides the nucleotide sequence with SEQ ID NO:2 and SEQ ID NO:3.
The present invention also provides the sequence that has homology with SEQ ID NO:1-3, and homology is preferably at least 50%, and preferably at least 60%, preferably at least 70%, preferably at least 80%, be preferably at least 90%, preferably at least 95%, more preferably at least 99% homology.
The present invention also provides a kind of nucleotide sequence, and it comprises the sequence that is selected among the SEQ ID NO:1-3.
The present invention also provides has the sequence that is selected among the SEQ ID NO:1-3, wherein one or more, preferred 1-15, preferred 1-10, preferred 1-5 modified sequence that Nucleotide is substituted, deletes and/or add and obtains.
Further, the invention still further relates to the purposes of microorganism of the present invention in producing D (-)-tartrate or its salt.
The invention still further relates to mutant or mutation and the biology culture thereof of described microorganism, described microbial mutation body or mutation and biology culture thereof can be converted into D (-)-tartrate or its salt with cis-form epoxy succinic acid or its salt.
Cis-form epoxy succinic acid salt involved in the present invention is the salt that cis-form epoxy succinic acid and various positively charged ion form, and comprises and is not limited only to cis-form epoxy succinic acid ammonium, cis-form epoxy succinic acid potassium, cis-form epoxy succinic acid sodium and cis-form epoxy succinic acid calcium etc.
Other purpose of the present invention sees among the detailed description of the present invention.
The substratum that the present invention utilized can be the substratum of this area routine.Described cultivation can be carried out under the conventional or known condition of this area.For example, can in laboratory or industrial fermentation jar, in suitable substratum and under the suitable condition, come culturing cell by shake-flask culture, small-scale or large scale fermentation (comprising successive, batch-wise, feed supplement-batch-wise fermentation).In comprising the proper nutrition substratum of carbon source and nitrogenous source and inorganic salt, cultivate with methods known in the art.
The composition of the substratum that the present invention is used and content thereof are such as following:
Seed culture medium: glucose 1%, peptone 0.5%, extractum carnis 0.5%, NaCl 1%, and pH 7.5.121 ℃ of sterilization 20min.
Produce the enzyme substratum: glucose 1%, peptone 0.5%, extractum carnis 0.5%, cis-form epoxy succinic acid disodium 1.0%, pH7.5,121 ℃ of sterilization 20min.
Suitable medium can obtain from suppliers, perhaps can prepare with methods known in the art.Be applicable to substratum of the present invention be not limited to recited above those.Incubation time in bacteriological incubator and temperature can be undertaken by the incubation time and the temperature of this area routine.
For the method for strain identification, this is well-known to those skilled in the art.Such as the category judgement method of classics, chemical classification, genetic classification method or the like.Strain identification method of the present invention, employing be the 16SrDNA sequence analysis that development in recent years is got up, its authenticate technology route comprises: the extracting of (1) microbial genome; (2) primer design is synthetic; (3) pcr amplification; (4) PCR product purification; (5) order-checking; (6) online BLAST analyzes.
The method of production D (-)-tartrate of the present invention and salt thereof can utilize microorganism of the present invention to adopt conventional step, device and condition to carry out.
The present invention uses the method for the bacterial characteristics of this area evaluation bacterial strain commonly used and comes Identifying micro-organisms CGMCC No.2075, and its bacterial characteristics is preferably following one or more: Gram-negative; Thalli morphology is short and small shaft-like or spherical (as shown in Figure 1); No gemma.
Embodiment
Mode below by embodiment further specifies the present invention.The following examples only are for illustrative purposes, and are not to limit the scope of the invention.
Embodiment 1 utilizes 16S rDNA sequence analysis Identifying micro-organisms CGMCC No.2075
One, the extracting of genomic dna
Used test kit is VIOGENE Genomic DNA Extraction Kit.Concrete extraction steps is as follows:
1, will be in inoculum centrifugal 10min under 5,000 * g of logarithmic phase, collecting precipitation makes that the bacterium number reaches about 1 * 10 in the precipitation
9
2, precipitation is resuspended in 200 μ l N,O-Diacetylmuramidase reaction soln (20mmol/L Tris-HCl, pH8.0; 2mmol/L EDTA; The 20mg/ml N,O-Diacetylmuramidase) in, and in 37 ℃ of following incubation 30min.
3, add 20 μ l Proteinase Ks and 200 μ l EX Buffer in sample, rapidly mixing.
4,60 ℃ of following incubation 30min are with the cracking bacterial cell, and every 5min comes biased sample by vortex or inversion between incubation period.
5, with 10mM Tris-HCl (pH9.0) and ddH
2O is used for the DNA wash-out in 70 ℃ of following preheatings.
6, add in the sample that 210 μ l dehydrated alcohols obtain in the step 3 and the vortex mixing.
7, B/T genomic dna micro-column is placed on the collection tube, the said mixture total number is moved in the post, centrifugal (6,000 * g) 2min place micro-column new collection tube then.
8,0.5ml WS Buffer is added in the above-mentioned new collection tube, centrifugal (6,000 * g) 2min discard effluent liquid.Repeat the washing of twice realization of aforesaid operations to micro-column.
9, again with micro-column at full speed centrifugal 2 min to remove residual ethanol.
10, micro-column is placed the collection tube of new 1.5ml.With the elutriant eluted dna of 200 μ l through preheating.
11. with the upright 1-5min of post, centrifugal then 1-2min is with eluted dna.
12. the DNA of wash-out is stored down in 4 ℃ or-20 ℃.
Two, pcr amplification
1, the employed primer of pcr amplification process is:
10F:5’AGA GTT TGA TCC TGG CTC AG 3’(SEQ ID NO:2);
1500R:5’GGT TAC CTT GTTACG ACT T 3’(SEQ ID NO:3)。
2, reagent
Ampli Taq Gold (5U/ μ l), 10 * PCR Buffer II (no MgCl
2), MgCl
2Solution (25mmol/L), TOYOBO dNTPs (being 2mmol/L).
3, PCR reaction system
The PCR reaction system comprises: the extractive DNA of 2 μ l, 2.5 μ l, 10 * PCR Buffer II, 2 μ l MgCl
2Solution, 2.5 μ l dNTPs, 2 μ l Primer, 0.25 μ l Ampli Taq Gold adds water and is settled to 25 μ l.
4, reaction conditions:
96 ℃ 5min
72℃ 5min
4 ℃ ∞
To carry out purifying and order-checking evaluation according to following program through the PCR product of said procedure gained.
Three, the purifying of PCR product
1, material
Marker is the DNA Marker DL2000 of Takara company.
The rubber tapping test kit is that the quick glue of Type B miniprep dna fragment of vast Tyke, Beijing biological gene technology limited liability company reclaims test kit.
2, purification step
(1) cuts off the agar sugar that contains DNA, make it as far as possible little, place the 1.5ml centrifuge tube.
(2) ratio that adds 700 μ l sol solutionses in per 100 μ l agaroses adds sol solutions, puts incubation 10min in 50 ℃ of water-baths, and the agar sugar is dissolved fully.Every 2min puts upside down mixing once.
(3) agarose solution after will dissolving moves into adsorption column, centrifugal 30s.Discard liquid in the collection tube, adsorption column is put into collection tube.
(4) add 500 μ l rinsing liquids, centrifugal 30s in the adsorption column.Discard liquid in the collection tube, adsorption column is put into collection tube, centrifugal 1min.
(5) adsorption column is placed a clean 1.5ml centrifuge tube, after adsorption film central authorities added 30 μ l elutriants, leave standstill 1min, centrifugal 1min was stored in-20 ℃ with 1.5ml centrifuge tube (DNA).
Four, order-checking
1, sequencing reaction step:
(1) according to sample panel sample and primer (SEQ ID NO:4-6) that needs react are arranged.
Seq forward:5’GAGC GGAT AACA ATTT CACA CAGG 3’(SEQ IDNO:4)
Seq reverse:5’CGCC AGGG TTTT CCCA GTCA CGAC 3’(SEQ IDNO:5)
Seq internal:5’CAGC AGCC GCGG TAAT AC 3’(SEQ ID NO:6)
(2) get 8 PCR reaction tubess, on 96 orifice plates, arrange.
(3) add 1-3 μ l template DNA in PCR reaction tubes bottom.The band brightness that the usage quantity of PCR product template is seen by agarose electrophoresis is determined.
(4) replenish volume to 12 μ l with 5% aqueous glycerin solution.
(5) add 4 μ l 3.2pM sequencing primers;
(6) add 4 μ l BigDye terminator;
(7) go up the PCR instrument, general cycling condition is as follows:
96℃,2min
4℃, ∞
(8) product is carried out alcohol secondary sedimentation purifying:
I. add 25 μ l sodium-acetate/ethanolic solns (2.5ml 3mol/L sodium-acetate+37.5ml ethanol) in each reaction tubes, behind the mixing at SORVALL
RRT-7 desk centrifuge (U.S. Sorvall company) last 4 ℃ with the centrifugal 30min of 4000r/min; Be inverted 96 orifice plates, it is centrifugal to fill up clean thieving paper, shuts down when being not more than 800r/min;
II. in every pipe, add 70% and freeze alcohol (20 ℃ of preservations) 50 or 100 μ l, the centrifugal 15min of 4000r/min; Be inverted 96 orifice plates, it is centrifugal to fill up clean thieving paper, shuts down when being not more than 800r/min;
III. repeating II goes on foot 1 time;
IV. will precipitate good DNA product and put into 25 μ l deionized formamides (ABI company).
(9) utilize 3700 DNA analysis instrument (PE Applied Biosystems company) to carry out sequential analysis, the sequence results (shown in A, B, C in the accompanying drawing 3) that obtains in 3 sequencing reactions is spliced, obtain complete sequence collection of illustrative plates (shown in D in the accompanying drawing 3).
2, utilize the Blast program, spliced 16S rDNA complete sequence and Genbank nucleic acid sequence data storehouse are compared, obtain result as shown in Figure 4.
The genome of the microorganism strains that the present invention is obtained carries out aforesaid DNA extracting, pcr amplification 16S rDNA, PCR product purification, order-checking, utilize Blast program and GenBank database to compare, the result shows that the 16S rDNA sequence of Bordetella sp.BK-52 is than the long 13kb of Bordetella sp.1-3, have 4 base pairs inequality in the 16S rDNA sequence that two bacterial strains are complementary, therefore the homology of two bacterial strains is at most 99%; All reach 97% with the homology of Bordetella sp.JC15, Bordetella sp.F2, Bordetella sp.E3.This shows that the microorganism strains that the present invention obtains is for having the new subspecies of the active Bordetella of cis-Epoxysuccinic acid hydratase (Bordetella), called after Bordetella BK-52 (Bordetella sp.BK-52).This bacterial strain is preserved in China Committee for Culture Collection of Microorganisms common micro-organisms preservation center on June 11st, 2007, and preserving number is CGMCC No.2075.
Embodiment 2 utilizes cis-form epoxy succinic acid disodium and CGMCC No.2075 bacterial strain of the present invention to prepare D (-)-tartrate
The inclined-plane of cultivating the above-mentioned Bordetella CGMCC No.2075 of 24h is inoculated in the 250ml Erlenmeyer flask that the 30ml liquid seed culture medium is housed, 30 ℃ of shaking culture 24h, drawing the above-mentioned seed liquor of 10ml is inoculated in the 1000ml triangular flask that 200ml product enzyme substratum is housed, 30 ℃ of shaking culture 24h, in triangular flask, add cis-form epoxy succinic acid disodium 10g gradually, after 72h shaking culture and reaction, add CaCl
2The aqueous solution filters and water washing and precipitating, obtains 11.5g four water calcium tartrates, refining through sulfuric acid solution, zwitterion exchange column again, concentrate, crystallization, separation and oven dry obtain D (-)-tartrate 6.4g.This D (-)-tartaric specific rotatory power is by analysis
Content is 99.7%.
Embodiment 3 utilizes cis-form epoxy succinic acid calcium and CGMCC No.2075 bacterial strain of the present invention to prepare D (-)-tartrate
The inclined-plane of cultivating the above-mentioned Bordetella CGMCC No.2075 of 24h is inoculated in the 250ml triangular flask that the 30ml liquid seed culture medium is housed, 30 ℃ of shaking culture 24h, drawing the above-mentioned seed liquor of 10ml is inoculated in the 1000ml triangular flask that 200ml product enzyme substratum is housed, 30 ℃ of shaking culture 24h, in triangular flask, add cis-form epoxy succinic acid calcium 10g, after 100h shaking culture and reaction, filter and water washing and precipitating, obtain 11.1g four water calcium tartrates, again through sulfuric acid solution, the zwitterion exchange column is refining, concentrate, crystallization, separation and oven dry obtain D (-)-tartrate 6.2g, and this D (-)-tartaric specific rotatory power is by analysis
Content is 99.6%.
Embodiment 4 utilizes the cis-form epoxy succinic acid disodium and produces D (-)-tartrate by the Bordetella CGMCC No.2075 strain cell of the present invention of к-carrageenin embedding
The Bordetella CGMCC No.2075 inclined-plane of cultivating 24h is inoculated in the 250ml triangular flask that the 30ml liquid seed culture medium is housed, 30 ℃ of shaking culture 24h, draw the above-mentioned seed liquor of 10ml and be inoculated in the 1000ml triangular flask that 200ml product enzyme substratum is housed 30 ℃ of shaking culture 24h.Centrifugal collection thalline is with к-being fixed of carrageenin embedding Bordetella CGMCC No.2075 biological catalyst 100g.This 100g immobilization Bordetella CGMCC No.2075 biological catalyst is put into 1000ml 1.0mol/L cis-form epoxy succinic acid two sodium solutions, behind 37 ℃ of reaction 72h, the filtered and recycled biological catalyst.Add CaCl in the filtered liquid
2The aqueous solution, through fully stirring after-filtration, washing precipitation gets 193g D (-)-calcium tartrate.With this D (-)-calcium tartrate add sulfuric acid solution, zwitterion exchange column refining, concentrate, crystallization, separation and oven dry obtain D (-)-tartrate 106g, this D (-)-tartaric specific rotatory power is by analysis
Content is 99.6%.
The immobilized biocatalyst that reclaims is put into 1000ml 1.0mol/L cis-form epoxy succinic acid two sodium solutions again, behind 37 ℃ of reaction 72h, the filtered and recycled biological catalyst.Add CaCl in the filtered liquid
2The aqueous solution after fully stirring, filters and washing precipitation, obtains 198g D (-)-calcium tartrate.This D (-)-calcium tartrate is refining with sulfuric acid solution, zwitterion exchange column, concentrate, crystallization, separation and oven dry obtain D (-)-tartrate 109g, this D (-)-tartaric specific rotatory power is by analysis
Content is 99.7%.
This immobilized biocatalyst can use repeatedly.
In summary, to have cis-form epoxy succinic acid and salt hydrolysis thereof be the characteristic of D (-)-tartrate and salt thereof to the present invention Bordetella CGMCC No.2075 of separating acquisition.
The biomaterial preservation
Clause according to budapest treaty, following biomaterial has been preserved in (No.3 A, DaTun Road, Chaoyang District, BeiJing City, China Committee for Culture Collection of Microorganisms common micro-organisms preservation center, Institute of Microorganism, Academia Sinica, 100101), its preservation data is as follows:
Preservation thing (Deposit) |
Preservation registration number |
Preservation date |
Bordetella BK-52 (Bordetella sp.BK-52) |
CGMCC No.2075 |
On June 11st, 2007 |
Be understandable that top description only is an example of the present invention, thereby the scope that claim of the present invention is protected limits with particular disclosed herein not merely.Any equivalent embodiments will be deemed to be within the scope of the present invention.In fact, according to the description of front, it all will be possible for those skilled in the art that the present invention is carried out relevant modifications and variations, thereby this modifications and variations also will drop within the scope of the appended claim of the present invention.