CA3149056A1 - Methods for dna library generation to facilitate the detection and reporting of low frequency variants - Google Patents
Methods for dna library generation to facilitate the detection and reporting of low frequency variants Download PDFInfo
- Publication number
- CA3149056A1 CA3149056A1 CA3149056A CA3149056A CA3149056A1 CA 3149056 A1 CA3149056 A1 CA 3149056A1 CA 3149056 A CA3149056 A CA 3149056A CA 3149056 A CA3149056 A CA 3149056A CA 3149056 A1 CA3149056 A1 CA 3149056A1
- Authority
- CA
- Canada
- Prior art keywords
- dna
- sequencing
- adaptor
- sequence
- read
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/191—Modifications characterised by incorporating an adaptor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/204—Modifications characterised by specific length of the oligonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Biomedical Technology (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP19198542.3A EP3795685A1 (en) | 2019-09-20 | 2019-09-20 | Methods for dna library generation to facilitate the detection and reporting of low frequency variants |
| EP19198542.3 | 2019-09-20 | ||
| PCT/EP2020/076246 WO2021053208A1 (en) | 2019-09-20 | 2020-09-21 | Methods for dna library generation to facilitate the detection and reporting of low frequency variants |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA3149056A1 true CA3149056A1 (en) | 2021-03-25 |
Family
ID=67998258
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA3149056A Pending CA3149056A1 (en) | 2019-09-20 | 2020-09-21 | Methods for dna library generation to facilitate the detection and reporting of low frequency variants |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20220364080A1 (https=) |
| EP (3) | EP3795685A1 (https=) |
| JP (1) | JP2022548504A (https=) |
| KR (1) | KR20220064959A (https=) |
| AU (1) | AU2020349622A1 (https=) |
| BR (1) | BR112022004821A2 (https=) |
| CA (1) | CA3149056A1 (https=) |
| WO (1) | WO2021053208A1 (https=) |
Families Citing this family (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| IT202200027138A1 (it) | 2022-12-29 | 2024-06-29 | Centro Di Riferimento Oncologico | Metodo per la correzione di errori nel sequenziamento di acidi nucleici |
| CN117437978A (zh) * | 2023-12-12 | 2024-01-23 | 北京旌准医疗科技有限公司 | 一种二代测序数据的低频基因突变分析方法、装置及其应用 |
| US20260049302A1 (en) | 2024-08-14 | 2026-02-19 | Sophia Genetics S.A. | Systems and methods for assaying various regions of a genome at different resolutions |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US10844428B2 (en) * | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
| EP3475863B1 (en) | 2016-06-22 | 2023-12-06 | Sophia Genetics S.A. | Methods for processing next-generation sequencing genomic data |
| WO2018144159A1 (en) * | 2017-01-31 | 2018-08-09 | Counsyl, Inc. | Capture probes using positive and negative strands for duplex sequencing |
| ES2898644T3 (es) * | 2017-06-27 | 2022-03-08 | Hoffmann La Roche | Adaptadores de ácido nucleico modulares |
| WO2019084245A1 (en) * | 2017-10-27 | 2019-05-02 | Myriad Women's Health, Inc. | METHODS AND COMPOSITIONS FOR PREPARING NUCLEIC ACID LIBRARIES |
| GB201804642D0 (en) * | 2018-03-22 | 2018-05-09 | Inivata Ltd | Methods of labelling nucleic acids |
| WO2019204702A1 (en) * | 2018-04-20 | 2019-10-24 | Board Of Regents, The University Of Texas System | Error-correcting dna barcodes |
| WO2020043803A1 (en) * | 2018-08-28 | 2020-03-05 | Sophia Genetics S.A. | Methods for asymmetric dna library generation and optionally integrated duplex sequencing |
-
2019
- 2019-09-20 EP EP19198542.3A patent/EP3795685A1/en not_active Withdrawn
-
2020
- 2020-09-21 BR BR112022004821A patent/BR112022004821A2/pt unknown
- 2020-09-21 JP JP2022512862A patent/JP2022548504A/ja active Pending
- 2020-09-21 CA CA3149056A patent/CA3149056A1/en active Pending
- 2020-09-21 WO PCT/EP2020/076246 patent/WO2021053208A1/en not_active Ceased
- 2020-09-21 EP EP20771905.5A patent/EP4031664B1/en active Active
- 2020-09-21 EP EP25160115.9A patent/EP4570922A3/en active Pending
- 2020-09-21 US US17/438,461 patent/US20220364080A1/en active Pending
- 2020-09-21 AU AU2020349622A patent/AU2020349622A1/en active Pending
- 2020-09-21 KR KR1020227007802A patent/KR20220064959A/ko active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| EP4031664A1 (en) | 2022-07-27 |
| EP4031664C0 (en) | 2025-02-26 |
| BR112022004821A2 (pt) | 2022-08-23 |
| WO2021053208A1 (en) | 2021-03-25 |
| EP3795685A1 (en) | 2021-03-24 |
| AU2020349622A1 (en) | 2022-03-24 |
| EP4570922A3 (en) | 2025-09-17 |
| EP4570922A2 (en) | 2025-06-18 |
| EP4031664B1 (en) | 2025-02-26 |
| JP2022548504A (ja) | 2022-11-21 |
| KR20220064959A (ko) | 2022-05-19 |
| US20220364080A1 (en) | 2022-11-17 |
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