CA2892012A1

CA2892012A1 - Mutations in solanaceae plants that modulate shoot architecture and enhance yield-related phenotypes

Info

Publication number: CA2892012A1
Application number: CA2892012A
Authority: CA
Inventors: Zachary Lippman; Soon-Ju PARK
Original assignee: Cold Spring Harbor Laboratory
Current assignee: Cold Spring Harbor Laboratory
Priority date: 2012-11-20
Filing date: 2013-11-19
Publication date: 2014-05-30
Also published as: WO2014081730A1; EP2922960A4; EP2922960A1

Abstract

Provided herein are genetically- altered Solanaceae plants, compositions related to the Solanaceae plants, and methods of making the Solanaceae plants.

Description

MUTATIONS IN SOLANACEAE PLANTS THAT MODULATE SHOOT
ARCHITECTURE AND ENHANCE YIELD-RELATED PHENOTYPES
FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT
This invention was made with government support under federal grant number IOS-1237880 awarded by the National Science Foundation. The government has certain rights in the invention.
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims the benefit of the filing date of U.S. Provisional Application No. 61/728,654, filed November 20, 2012, and of the filing date of U.S.
Provisional Application No. 61/869,052, filed August 22, 2013 and claims priority to U.S.
Application No. 13/799,831 filed March 13, 2013. The entire contents of each of these referenced applications are incorporated by reference herein.
BACKGROUND
There are ongoing attempts to enhance yield and quality, as well as life span, of food crops and other plants, such as ornamental plants and trees, in an effort to use resources more efficiently and produce more food, flowers and trees. Additional approaches for doing so are still needed, and one of the primary targets for manipulating plant productivity is the flowering process and its corresponding effects on vegetative and reproductive shoot architecture.
SUMMARY
Described herein are novel genetic variants of Solanaceae plants, e.g., tomato plants, that (a) exhibit modified flowering time and shoot architecture; (b) exhibit higher yield, higher quality products (e.g., fruits); (c) produce products (e.g., fruits) with different compositions, (e.g., brix, also known as enhanced soluble solids or sugar concentration in the fruits,); or (d) any combination of (a) to (c), compared to corresponding "wild-type (WT)"
Solanaceae plants (Solanaceae plants that have not been genetically altered).
In one embodiment, a genetically-altered plant, such as a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant, comprises a mutant suppressor of spl (sspl) gene and a mutant single flower truss (sft) gene. Such Solanaceae plants are heterozygous or homozygous for mutant genes (e.g., heterozygous or homozygous for a mutant suppressor of spl (sspl) gene or heterozygous or homozygous for a mutant single flower truss (sft) gene) or heterozygous or homozygous for both a mutant suppressor of spl (sspl) gene and a mutant single flower truss (sft) gene (double heterozygotes or double homozygotes). Such plants may further comprise a mutant self pruning (sp) gene. Such plants may be heterozygous or homozygous for a mutant self pruning (sp) gene.
Such plants can also be in the wild type SELF PRUNING (SP) background.
In a further embodiment, Solanaceae plants comprise a mutant self pruning (sp) gene and a mutant single flower truss (sft) gene. Such Solanaceae plants are heterozygous or homozygous for mutant genes (e.g., for a mutant self pruning (sp) gene or for a mutant single flower truss (sft) gene) or heterozygous or homozygous for both a mutant self pruning (sp) gene and a mutant single flower truss (sft) gene (double heterozygotes or double homozygotes).
In another embodiment, Solanaceae plants comprise a mutant self pruning (sp) gene and a mutant suppressor of spl (sspl) gene. Such Solanaceae plants are heterozygous or homozygous for mutant genes (e.g., for a mutant self pruning (sp) gene or for a mutant suppressor of spl (sspl) gene) or heterozygous or homozygous for both a mutant self pruning (sp) gene and a mutant suppressor of spl (sspl) gene (double heterozygotes or double homozygotes).
In yet another embodiment, Solanaceae plants comprise a mutant suppressor of spl (sspl) gene or a mutant single flower truss (sft) gene. Such Solanaceae plants are heterozygous or homozygous for a mutant suppressor of spl (sspl) gene or heterozygous or homozygous for a mutant single flower truss (sft) gene. Such plants may further comprise a mutant self pruning (sp) gene. Such plants may be heterozygous or homozygous for a mutant self pruning (sp) gene. Such plants can also be in the wild type SELF PRUNING
(SP) background.
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID
NO: 15.

- 2 -In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO:
1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID
NO: 3.
In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID
NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sspl gene is ssp-2129 or ssp-610. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10). SEQ ID NO: 2 is the nucleotide sequence of the coding sequence of ssp-2129, a mutant allele of SSP1. SEQ ID NO: 3 is the nucleotide sequence of the coding sequence of ssp-610, a mutant allele of SSP1. SEQ ID NO: 5 is the amino acid sequence of ssp-2129 mutant protein. SEQ ID NO: 6 is the amino acid sequence of ssp-610 mutant protein. In some embodiments, the mutant sft gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises the nucleic acid sequence of SEQ ID NO: 17. In some embodiments, the mutant sft gene encodes a mutant sft polypeptide comprising the sequence of SEQ ID NO: 21. In some embodiments, the mutant sft gene comprises a nucleotide sequence that encodes a mutant sft polypeptide comprising a Val to Met mutation at position 132 of SEQ ID NO: 19. In some embodiments, the mutant sft gene is sft-1906.
In some embodiments, the genetically-altered Solanaceae plant is a genetically altered semi-determinate or semi-indeterminate Solanaceae plant, such as a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered semi-determinate or semi-indeterminate Solanaceae plant is isogenic. In some embodiments, the genetically-altered semi-determinate or semi-indeterminate Solanaceae plant is inbred. In some

- 3 -embodiments, the genetically-altered semi-determinate or semi-indeterminate Solanaceae plant is a hybrid.
In another aspect, the disclosure relates to a seed for producing a genetically-altered Solanaceae plant, such as a semi-determinate or semi-indeterminate genetically-altered Solanaceae plant, as described herein, e.g., a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprising (e.g., heterozygous or homozygous for) a mutant single flower truss (sft) gene and a mutant suppressor of spl (sspl) gene, a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprising (e.g., heterozygous or homozygous for) a mutant single flower truss (sft) gene and a mutant self pruning (sp) gene, a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprising (e.g., heterozygous or homozygous for) a mutant suppressor of spl (sspl) gene and a mutant self pruning (sp) gene, or a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprising (e.g., heterozygous or homozygous for) a mutant single flower truss (sft) gene, a mutant suppressor of spl (sspl) gene, and a mutant self pruning (sp) gene.
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif comprising SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3.
In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ
ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid

- 4 -sequence of mutant sp protein (e.g., SEQ ID NO: 10).
In yet another aspect, the disclosure relates to methods of producing a genetically-altered Solanaceae plant, such as a semi-determinate or semi-indeterminate Solanaceae plant.
In some embodiments, the method comprises:
(a) introducing a mutant sft gene into a Solanaceae plant containing a mutant sspl gene (or alternatively introducing a mutant sspl gene into a Solanaceae plant containing a mutant sft gene), thereby producing a genetically-altered Solanaceae plant containing a mutant sft gene and a mutant sspl gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sft gene and heterozygous or homozygous for the mutant sspl gene. In some embodiments, the plant produced in (b) is heterozygous for the mutant sft gene and heterozygous for the mutant sspl gene. In some embodiments, the plant produced in (b) further comprises a mutant sp gene (e.g., is heterozygous or homozygous for a mutant sp gene).
In some embodiments, the method of producing a genetically-altered Solanaceae plant comprises:
(a) introducing a mutant sft gene into a Solanaceae plant part containing a mutant sspl gene (or alternatively introducing a mutant sspl gene into a Solanaceae plant part containing a mutant sft gene), thereby producing a genetically-altered Solanaceae plant part containing the mutant sft gene and the mutant sspl gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sft gene and a mutant sspl gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sft gene and the mutant sspl gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sft gene and the mutant sspl gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sft gene and heterozygous or homozygous for the mutant sspl gene, thereby producing a genetically-altered Solanaceae plant. In some embodiments, the

- 5 -plant produced in (c) is heterozygous for the mutant sft gene and heterozygous for the mutant sspl gene. In some embodiments, the plant produced in (c) further comprises a mutant sp gene (e.g., is heterozygous or homozygous for a mutant sp gene).
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID
NO: 15.
In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO:
1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID
NO: 3.
In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID
NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10). In some embodiments, the mutant sft gene comprises a coding sequence that comprises SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises SEQ ID NO: 17. In some embodiments, the mutant sft gene comprises a nucleic acid sequence that encodes a mutant sft polypeptide comprising the sequence of SEQ ID NO:
21. In some embodiments, the mutant sft gene and/or mutant sspl gene is introduced into a plant or a plant part by a method selected from the group consisting of:
Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation. In some embodiments, the Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is a

- 6 -plant that suppresses sp imposed determinate growth and exhibits a sympodial index of less than three and either terminates (is semi-determinate), or continues to produce sympodial shoots (is semi-indeterminate). Accordingly, in some embodiments, the Solanaceae plant is semi-determinate or semi-indeterminate. In some embodiments, the Solanaceae plant is a semi-determinate or semi-indeterminate plant with a sympodial index of less than 3, less than 2.5, less than 2, or less than 1.5. In some embodiments, the Solanaceae plant is a semi-determinate or semi-indeterminate tomato plant. In some embodiments, the Solanaceae plant is a semi-determinate or semi-indeterminate tomato plant with a sympodial index of less than 3, less than 2.5, less than 2, or less than 1.5 In some embodiments, the Solanaceae plant is inbred. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a hybrid. In another aspect, the disclosure relates to a genetically-altered Solanaceae plant produced by or producible by the methods described herein.
In another aspect, the disclosure relates to a genetically-altered Solanaceae plant, e.g., a semi-determinate or semi-indeterminate Solanaceae plant, homozygous for a mutant suppressor of spl (sspl) gene and homozygous for a self pruning (sp) gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ
ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some

- 7 -embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10).
In some embodiments, the genetically-altered Solanaceae plant, e.g., a semi-determinate or semi-indeterminate Solanaceae plant, is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant, e.g., a semi-determinate or semi-indeterminate Solanaceae plant, is isogenic. In some embodiments, the genetically-altered Solanaceae plant, e.g., a semi-determinate or semi-indeterminate Solanaceae plant, is inbred. In some embodiments, the genetically-altered Solanaceae plant, e.g., a semi-determinate or semi-indeterminate Solanaceae plant, is a hybrid.
In another aspect, the disclosure relates to a genetically-altered Solanaceae plant heterozygous for a mutant suppressor of spl (sspl) gene and homozygous for a mutant self pruning (sp) gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif.
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO:
14 or SEQ
ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ
ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID
NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO:

8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10). In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant.
In some embodiments, the genetically-altered Solanaceae plant is isogenic. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a hybrid.
In another aspect, the disclosure relates to a genetically-altered Solanaceae plant homozygous for a mutant suppressor of spl (sspl) gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID
NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T
mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C
to T
mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10). In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is isogenic. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a hybrid. In some embodiments, the genetically-altered Solanaceae plant is homozygous for a wild-type SELF PRUNING (SP) gene.
In another aspect, the disclosure relates to a seed for producing a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant as described herein, e.g. a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant homozygous for

- 9 -a mutant suppressor of spl (sspl) gene and homozygous for a mutant self pruning (sp) gene.
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO:
15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ
ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 23.
In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10).
In yet another aspect, the disclosure relates to methods of producing a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant. In some embodiments, the method comprises:
(a) introducing a mutant sspl gene into a Solanaceae plant containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant containing a mutant sspl gene and a mutant sp gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate or semi-indeterminate. In some embodiments, the method of producing a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprises:

- 10-(a) introducing a mutant sspl gene into a Solanaceae plant part containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant sspl gene and the mutant sp gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sspl and a mutant sp gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate or semi-indeterminate. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO:
6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at position 647 of SEQ ID NO: 1, or a C to T
mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 25 or SEQ ID NO: 26. In some embodiments, the mutant sp gene comprises a coding sequence that comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 23. In some embodiments, the mutant sp gene comprises a nucleic acid that encodes the amino acid sequence of mutant sp protein (e.g., SEQ ID NO: 10). In some embodiments, the mutant sspl gene is introduced into a

- 11-plant or a plant part by a method selected from the group consisting of:
Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation. In some embodiments, the Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the Solanaceae plant is inbred. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a hybrid. In another aspect, the disclosure relates to a genetically-altered semi-determinate Solanaceae plant produced by or producible by the methods herein.
Other aspects of the disclosure relate to isolated polynucleotides or isolated polypeptides. In some embodiments, the isolated polynucleotide encodes a mutant sspl protein having the amino acid sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the isolated polynucleotide comprises the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3. In some embodiments, the isolated polynucleotide encodes a mutant sft protein having the amino acid sequence of SEQ ID NO: 21. In some embodiments, the isolated polynucleotide comprises the nucleic acid sequence of SEQ ID
NO: 20.
Other aspects of the disclosure relate to plant cells and food products as described herein.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 shows the SSP1 protein and SFT protein. The bZIP domain and SAP motif are indicated and the two mutations (ssp-2129 and ssp-610) in the SAP motif of the SSP1 protein are indicated: Proline to Leucine (P216L) and Threonine to Isoleucine (T214I), respectively. Two putative ligand binding sites are indicated and the mutation in the external loop region of the SFT protein is indicated (se).
Figure 2 shows graphical representations of the suppression of sp mutant imposed sympodial shoot termination with the sspl and sft mutants in the sp mutant background. Left depicts a sp "Determinate" (D) mutant plant. Right depicts the wild-type "Indeterminate"
(ID) plant with fully functional SP, SSP1 and SFT genes. Note the three-leaf reiteration of vegetative sympodial shoots (SYM) after the primary shoot produces 7-9 leaves and transitions to flowering. The number of leaves in each sympodial unit, known as the

- 12-Sympodial Index (SI) is consistently three. The second diagram from left depicts the "Semi-determinate" (SD) single heterozygote plants of ssp-2129, ssp610 or sft1906, and double heterozygote plants of ssp-2129, ssp610 or sft1906 in the sp mutant background. Note that shoot growth ends after a few more units of vegetative shoot (SYM) production compared to the sp determinate plants. Right middle depicts the "semi-indeterminate" ssp-2129; sp double mutant plant. Note the reduction in leaf number from three to two in each SYM
(SI=2). Dots indicate flowers/fruits produced in each inflorescence. Black and gray arrows indicate axillary shoots on the leaf axils. The long horizontal arrow indicates the gradual change in determinacy due to individual and combined mutations in homozygous and heterozygous conditions.
Figure 3 shows internode length between inflorescences in sympodial units in determinate (cultivar M82D), indeterminate (cultivar M82ID and sft1906; sp) and semi-indeterminate (ssp-2129; sp and, ssp-610; sp) plants. Note the intermediate internode length for the semi-indeterminate ssp-2129; sp and ssp-610; sp double mutant plants, which reflects a reduced sympodial index to an average of two leaves. ** P<0.01, student t-test against M82D, and against M82ID indicated with lines.
Figure 4 is a series of graphs showing shoot determinacy of the primary shoot, the inflorescence, and the sympodial shoot in M82 indeterminate (M82ID), M82 determinate (M82D), two sspl mutant alleles (ssp-2129 and ssp-610), the sft-1906 mutant allele, and all genotypic combinations among mutant alleles. Figure 4A shows the numbers of leaves produced by the primary shoot. Figure 4B shows the numbers of flowers per inflorescence.
Figure 4C shows the total number of inflorescences generated from each genotype. Figure 4D shows numbers of leaves within each sympodial shoot (i.e.; sympodial index) in M82ID, M82D, ssp-2129 and ssp-610 and sft1906. The primary and sympodial shoot architectures from all genotypic combinations are shown in Figure 4E. Note the quantitative range of sympodial indices created by different homozygous and heterozygous mutant combinations.
ID, indeterminate SYM growth; D, determinate SYM growth; SD, semi-determinate SYM
growth. The font size of "D" and "ID" indicate relative values of shoot terminations from 20 plants. ** P<0.01, students t-test against M82D indicated with asterisks above bars, and against M82ID indicated asterisks above lines. Standard error is shown for Figure 4B, C, and E, and in all other cases standard deviation.

- 13 -Figure 5 is a schematic of the map-based cloning procedure used to identify the SSP1 gene. The highlighted region is the mapping interval identified using map-based cloning.
Arrows indicate single nucleotide polymorphisms (SNPs). The coding region of SSP1 is shown. The C to T mutations in the protein C-terminus of ssp-2129 and ssp-610 are indicated.
Figure 6A and 6B is a ClustalW analysis of the nucleotide sequence of the coding sequence of the wild-type SSPlgene and the coding sequences of the two mutant alleles e610 and e2129 (SEQ ID NOs: 1, 3 and 2, respectively).
Figure 7 is a ClustalW analysis of the amino acid sequence of the wild-type SSPlgene and the two mutant alleles e610 and e2129 (SEQ ID NOs: 4, 6 and 5, respectively).
Figure 8A-8D are graphic representations of results of assessment of characteristics of plants of the genotypes indicated. Figure 8A shows brix-yield (brix x yield) of plants of the genotypes indicated. Figure 8B shows (soluble solids, sugar concentration in the fruits) of plants of the genotypes indicated. Figure 8C shows yield of red fruit for plants of the genotypes indicated. Figure 8D shows total yield of fruit for plants of the genotypes indicated. Yield was measured by taking 15 plants from each genotype in a completely randomized design with 1 plant/meter squared. * P<0.05, ** P<0.01, students t-test against M82D. Error bars are standard error.
Figure 9 is a ClustalW analysis of the nucleotide sequence of the wild-type SFT
coding sequence and the mutant allele sft-1906 coding sequence (SEQ ID NOs: 18 and 20, respectively).
Figure 10 is a ClustalW analysis of the amino acid sequence of the wild-type SFT
gene and the mutant allele sft-1906 (SEQ ID NOs: 19 and 21, respectively).
SEQUENCES
SEQ ID NO: 1 is the nucleotide sequence of the coding sequence of wild-type tomato SSP1.
SEQ ID NO: 2 is the nucleotide sequence of the coding sequence of ssp-2129, a mutant allele of SSP1.
SEQ ID NO: 3 is the nucleotide sequence of the coding sequence of ssp-610, a mutant allele of SSP1.

- 14-SEQ ID NO: 4 is the amino acid sequence of wild-type tomato SSP1 protein.
SEQ ID NO: 5 is the amino acid sequence of ssp-2129 mutant protein.
SEQ ID NO: 6 is the amino acid sequence of ssp-610 mutant protein.
SEQ ID NO: 7 is the nucleotide sequence of the coding sequence of wild-type tomato SP
gene.
SEQ ID NO: 8 is the nucleotide sequence of the coding sequence of a mutant sp gene.
SEQ ID NO: 9 is the amino acid sequence of wild-type SP protein.
SEQ ID NO: 10 is the amino acid sequence of mutant sp protein.
SEQ ID NO: 11 is the amino acid sequence of the SAP motif of the tomato SSP1 protein.
SEQ ID NO: 12 is the nucleotide sequence of ssp-2129 that encodes the mutant SAP motif of ssp-2129 protein.
SEQ ID NO: 13 is the nucleotide sequence of ssp-610 that encodes the mutant SAP motif of ssp-610 protein.
SEQ ID NO: 14 is the amino acid sequence of the mutant SAP motif of ssp-2129 protein.
SEQ ID NO: 15 is the amino acid sequence of the mutant SAP motif of ssp-610 protein.
SEQ ID NO: 16 is the nucleic acid sequence of SFT wild-type genomic region.
SEQ ID NO: 17 is the nucleic acid sequence of sft-1906, a mutant allele of SFT, genomic region.
SEQ ID NO: 18 is the nucleic acid sequence of the coding sequence of wild-type SFT DNA.
SEQ ID NO: 19 is the amino acid sequence of wild-type SFT protein.
SEQ ID NO: 20 is the nucleic acid sequence of the coding sequence of sft-1906, a mutant of SFT.
SEQ ID NO: 21 is the amino acid sequence of mutant sft protein.
SEQ ID NO: 22 is the nucleic acid sequence of SP wild-type genomic region.
SEQ ID NO: 23 is the nucleic acid sequence of sp mutant genomic region.
SEQ ID NO: 24 is the nucleic acid sequence of SSP wild-type genomic region.
SEQ ID NO: 25 is the nucleic acid sequence of ssp-2129 mutant genomic region.
SEQ ID NO: 26 is the nucleic acid sequence of ssp-610 mutant genomic region.

- 15 -DETAILED DESCRIPTION
Tomato yield, on both a per plant basis and in the context of tons per acre, depends partly on fruit size, but is mainly driven by the production of dozens of multi-flowered inflorescences and resulting fruit clusters that develop according to the "sympodial" growth habit. The defining feature of sympodial plants is that the shoot apical meristem (SAM) ends growth by differentiating into a terminal flower after producing a set number of leaves, and growth then renews from a specialized axillary (sympodial) meristem (SYM) that, in tomato, produces just three leaves before undergoing its own flowering transition and termination.
Indefinite reiteration of three-leaf sympodial flowering events results in an "indeterminate"
plant that continuously produces equally spaced inflorescences. The regular production of leaves between inflorescences is known as the "sympodial index" (SI).
Tomato breeding goals are multifaceted and shift according to the needs and desires of growers (e.g. improved pest resistances) and consumers (e.g. better quality), but one unwavering aim is to improve yield. Indeterminate cultivars are grown commercially to enable continuous market delivery of "round", "roma", "cocktail", "grape", and "cherry"
tomato types that are eaten fresh and command a premium price. Indeterminate tomatoes are primarily grown in greenhouses where successively ripening clusters are harvested by hand multiple times over an extended period, in some cases up to a year, to maximize yield on plants that must be pruned to one or two main shoots to enable efficient greenhouse growth and maintain fresh market quality. While the necessary pruning of indeterminate tomatoes facilitates agronomic practices that maximize quality, such as size, shape, and flavor, it also limits yield. In contrast, tomatoes grown for sauces, pastes, juices, or other processed can or jar products where fruit quality is less relevant, must be managed agronomically to produce maximum yields (per acre) through once-over mechanical harvests to be economically justified. Maximal yields for processing tomatoes are achieved by growing determinate sp mutants in the open field to their full potential, because sequential sympodial shoots transition to flowering progressively faster in sp plants, which results in a compact bush-like form where fruits ripen uniformly. Thus, sp varieties lend themselves to once-over mechanical harvesting and have therefore come to dominate the processing tomato industry, although determinate varieties have also been bred for fresh market production. In a parallel to the physical pruning of indeterminate tomatoes, one drawback of sp-imposed determinate

- 16-growth is that inflorescence and fruit production is restricted, because of a genetic pruning that causes sympodial cycling to stop. Thus, maximizing inflorescence and fruit production while simultaneously minimizing shoot production for the tomato industry has remained a challenging goal.
One approach to increase inflorescence production and yield is to reduce SI to less than three. As described herein, chemically induced mutant populations of tomatoes in the self pruning (sp) background were screened for mutations that suppressed sp imposed growth determinacy, with the goal of producing indeterminate tomatoes with reduced SI. Three mutants were identified. The first mutant carried a novel mutation in the gene SINGLE
FLOWER TRUSS (SFT), the mutation referred to herein as sft-1906, which resulted in a weak allele. SFT is the tomato ortholog of the Arabidopsis thaliana gene FLOWERING
LOCUS T
(FT). The other two mutants were defective in a gene designated SUPPRESSOR OF
SP]
(SSP1), which encodes a protein partner of SFT. SSP1 is the tomato ortholog of the Arabidopsis thaliana gene FLOWERING LOCUS D (FD). These other two mutants are referred to herein as ssp-2129 or ssp-610. Remarkably, each homozygous sft and sspl mutant transforms determinate tomato plants into indeterminate tomato plants with a SI of less than three.
As described herein, data was generated in cherry and roma tomato types that demonstrate the utility of the new SFT and SSP1 mutations to serve as novel germplasm for breeding. Specifically, it was found that mixing and matching these mutations in various homozygous and heterozygous combinations resulted in a quantitative range of sympodial indices and novel determinate, semi-determinate, and indeterminate shoot architectures that have not been possible to achieve with existing breeding germplasm. Notably, it has been also found that these mutations increase the number of flowers per inflorescence.
The SSP1 and SFT mutations were introduced into the classic mutant self-pruning (sp) determinate background (sp-classic, coding sequence is SEQ ID NO: 8), which is a prerequisite genotype for generating indeterminate plants with a SI of less than 3. SP is the tomato ortholog of the Arabidopsis thaliana gene TERMINAL FLOWER] (TFL1). Data from the roma cultivar `M82' (which is homozygous for sp-classic) showed that homozygosity for ssp-2129 or ssp-610 in the sp-classic background results in semi-indeterminate plants with an average SI of 2. Data from a determinate variety of the cherry type 'Currant' tomato (S.

- 17 -pimpinellifolium) showed that homozygosity for sft-1906 or either of the sspl mutations created a SI of 2. Double heterozygotes of sft-1906 and ssp-2129 or ssp-610 in hybrids resulted in an average SI less than 2, illustrating that combining mutations in either homozygous or heterozygous states can lead to subtle quantitative manipulation of sympodial shoot architecture and yield potential. Finally, all three mutants increase the number of flowers per inflorescence, with sft-1906 exhibiting the strongest effect.
Described herein are genetically-altered Solanaceae plants, such as genetically-altered semi-determinate (SD) or semi-indeterminate (SID) Solanaceae plants, e.g., a tomato plant (Solanum lycopersicum), that comprise a mutant gene or mutant genes and exhibit characteristics different from those of the corresponding plant that has not been genetically altered. The characteristics include any combination of the following:
modified flowering time and shoot architecture; higher yield; higher quality products (e.g., fruits); and products (e.g., fruits) with different compositions (e.g., brix, also known as enhanced soluble solids or sugar concentration in the fruits,), compared to corresponding "wild-type (WT)" Solanaceae plants that have not been genetically altered. In some embodiments, the genetically-altered Solanaceae plant has a sympodial index of less than 3, less than 2.5, less than 2, or less than 1.5. In some embodiments, the genetically-altered Solanaceae plant has a sympodial index of between 1 and 3 or between 1.5 and 2.5.
In some embodiments, genetically-altered heterozygous or homozygous Solanaceae plants, e.g., tomato plants (Solanum lycopersicum), comprise a mutant flowering gene SSP1 (sspl) and mutant FLOWERING LOCUS gene SFT (sft). In some embodiments, the genetically-altered heterozygous plants are semi-determinate (SD) or semi-indeterminate (SID). Such plants have increased yield; higher quality products (e.g., fruits); and products (e.g., fruits) with different compositions (e.g., brix, also known as enhanced soluble solids or sugar concentration in the fruits,) relative to these characteristics of corresponding plants that do not comprise such mutant genes. The plants comprise a variety of combinations of the different mutant alleles, such as mutant sspl (e.g., ssp-2129, ssp-610) with sft mutations (e.g., sft-1906). The genetically-altered plants are heterozygotes or homozygotes and, in some cases, are double heterozygotes or double homozygotes. In one embodiment, such plants comprise ssp-2129, described herein, and mutant SFT, such as sft-1906. In another embodiment, the plants comprise ssp-610, described herein, and mutant SFT, such as sft-

- 18 -1906.
In a specific embodiment, genetically-altered Solanaceae plants, such as tomato plants designated herein as sft-1906 x M82 Fl, exhibited greater yield than the corresponding wild type tomato plants. See, for example, Figure 8D. Similarly, other genetically-engineered tomato plants produced greater yields (total fruit, red fruit, for example) than the corresponding wild-type tomato plants. See Figure 8C and 8D, graphic representations of yield of fruit by heterozygous tomato plants described herein (e.g., double heterozygotes ssp2129 x sft1906 and ssp610 x sft1906, as well as the three heterozygotes indicated: sft1906 x M82F1; ssf610 x M82F1; ssp2129 x M82F1).
Also described herein are semi-determinate (SD) or semi-indeterminate (SID) Solanaceae plants, e.g., a tomato plant (Solanum lycopersicum), that comprise a mutant of SUPPRESSOR OF SP1 (SSP1). The SSP1 gene encodes a bZIP transcription factor that physically interacts with the florigen hormone, SFT, to induce the flowering transition and flower production. SSP1 has two domains, the bZIP domain and the SAP motif (Figure 1).
The bZIP domain contains a basic leucine zipper capable of interacting with DNA. The SAP
motif, "RTSTAPF" (SEQ ID NO: 11), is found in the C-terminus of SSP1 from amino acid position 211 to 217 in SEQ ID NO: 4. The SAP motif is similar to a conventional 14-3-3 recognition motif.
Mutant sspl genes, such as ssp-2129 and ssp-610 In some embodiments, the mutant sspl gene comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 2; a coding sequence comprising a portion of SEQ ID NO: 2 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 2; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 2; a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651of SEQ ID NO: 2 (CGGACGTCAACTGCTCTATTT, SEQ ID NO: 12); a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID
NO: 2; an orthologue or homologue of the nucleic acid sequence of positions 631 to 651 of

- 19-SEQ ID NO: 2; a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 3; a coding sequence comprising a portion of SEQ ID NO:
3 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 3; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 3; a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651of SEQ ID NO: 3 (CGGACGTCAATTGCTCCATTT, SEQ
ID NO: 13); a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 3; or an orthologue or homologue of the nucleic acid sequence of positions 631 to 651of SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and position 647 of SEQ
ID NO: 1. In some embodiments, the mutant sspl gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NOs: 5 or 6 or a nucleotide sequence that encodes a polypeptide that comprises SEQ ID NOs: 14 or 15. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in a SAP motif, wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, the SAP motif with the at least one mutation has the amino acid sequence SEQ
ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in a SAP motif or in the two amino acids flanking the N-terminal position of the SAP motif and the one amino acid flanking the C-terminal position of the SAP motif, which includes the phosphorylation site for Ca-dependent protein kinases (CDPKs), wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, the mutant sspl gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 25; a portion of SEQ ID NO: 25 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 25; a nucleic acid (e.g., DNA) having at

- 20 -least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 25; an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 25; a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 26; a portion of SEQ ID NO: 26 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 26;
a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 26; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 26.
In some embodiments, the semi-determinate (SD) or semi-indeterminate (SID) Solanaceae plant, e.g., a tomato plant, comprises a mutant sspl polypeptide (e.g., a mutant sspl protein) encoded by a mutant sspl gene. In some embodiments, the mutant sspl polypeptide comprises the sequence of SEQ ID NO: 5; a portion of SEQ ID NO: 5 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ ID NO: 5; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID
NO: 5; the amino acid sequence of positions 211 to 217 in SEQ ID NO: 5 (RTSTALF, SEQ
ID NO: 14); an orthologue or homologue of the polypeptide having the sequence of SEQ ID
NO: 5; an orthologue or homologue of the amino acid sequence of positions 211 to 217 in SEQ ID NO: 5 (RTSTALF, SEQ ID NO: 14); a polypeptide (e.g., a protein) having the sequence of SEQ ID NO: 6; a portion of SEQ ID NO: 6 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ ID NO:
6; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 6; the sequence of positions 211 to 217 in SEQ ID NO: 6 (RTSIAPF, SEQ ID NO: 15); an orthologue or homologue of the polypeptide having the sequence of SEQ ID NO: 6; or an orthologue or homologue of the polypeptide sequence of positions 211 to 217 in SEQ ID NO: 6 (RTSIAPF, SEQ ID NO: 15). In some embodiments, the polypeptide comprises a Thr to Ile mutation at position 214 of SEQ ID NO: 4 or a Pro to Leu mutation at position 216 of SEQ
ID NO: 4, or a Thr to Ile mutation at position 214 and a Pro to Leu mutation at position 216 of SEQ ID
NO: 4. In some embodiments, the mutant sspl polypeptide comprises an amino acid

- 21 -sequence with at least one mutation in a SAP motif, wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy or semi-indeterminacy. In some embodiments, the SAP motif with the at least one mutation has the amino acid sequence SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl polypeptide comprises an amino acid sequence with at least one mutation in a SAP motif or in the two amino acids flanking the N-terminal position of the SAP motif and the one amino acid flanking the C-terminal position of the SAP
motif, which includes the phosphorylation site for Ca-dependent protein kinases (CDPKs), wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy or semi-indeterminacy.
Mutant sft gene, such as sft-1906 In some embodiments, the mutant sft gene comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 20; a coding sequence comprising a portion of SEQ ID NO: 20 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 20;
a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 20; a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO:20. In some embodiments, the mutant sft gene comprises a G to A mutation at position 394 of SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 17; a portion of SEQ ID NO: 17 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 17;
a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 17; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 17. In some embodiments, the mutant sft gene comprises a nucleotide sequence that encodes a mutant sft polypeptide of SEQ ID NO: 21. In some embodiments, the mutant sft gene comprises a

- 22 -nucleotide sequence that encodes a mutant sft polypeptide that comprises a Val to Met mutation at position 132 of SEQ ID NO: 19.
Solanaceae plants comprising mutant genes Flowering time and shoot architecture; higher yield, higher quality products (e.g., fruits); and products (e.g., fruits) with different compositions (e.g., brix, also known as enhanced soluble solids or sugar concentration in the fruits,), can be manipulated in a wide variety of types of Solanaceae plants that comprise a mutant sspl gene or a mutant sft gene, or two or three mutant genes¨a mutant sspl gene and a mutant self-pruning (sp) gene; a .. mutant sspl and a mutant sft gene; a mutant sft gene and a mutant self-pruning (sp) gene; or a mutant sft gene, a mutant sspl gene, and a mutant self-pruning (sp) gene. The mutant sspl gene can comprise, for example, any of the sspl nucleic acids described herein. The mutant sft gene can comprise, for example, any of the sft nucleic acids described herein. The mutant sp gene can comprise, for example, any of the sp nucleic acids described herein.
In specific embodiments, the mutant sspl gene and/or the mutant sft gene is present along with a mutant self-pruning (sp) gene in a double mutant background and the mutant sp gene (Pnueli et al. Development. 1998;125(11):1979-89) comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 8; a coding sequence comprising a portion of SEQ ID NO: 8 that exhibits substantially the same .. activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 8; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 8; or a coding sequence comprising an orthologue or homologue of the .. nucleic acid having the sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO:

23; a portion of SEQ ID NO: 23 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 23; a nucleic acid (e.g., DNA) .. having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 23; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 23. In some embodiments, the mutant sp gene comprises a C to T mutation at position 227 of SEQ ID NO: 7. In some embodiments, the mutant sp gene comprises a nucleotide sequence with at least one mutation that reduces the activity of a sp protein encoded by the mutant sp gene. In some embodiments, the mutant sp gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NO: 10. In some embodiments, the SD or SID Solanaceae plant comprises a mutant sp polypeptide (e.g., a protein) encoded by a mutant sp gene. In some embodiments, the mutant sp polypeptide comprises, for example, the sequence of SEQ ID
NO: 10; a portion of SEQ ID NO: 10 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ ID NO: 10; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 10; or an orthologue or homologue of the polypeptide having the sequence of SEQ ID NO: 10. In some embodiments, the mutant sp polypeptide comprises a Pro to Leu mutation at position 76 of SEQ ID NO: 9.
In some embodiments, the mutant sp polypeptide comprises at least one mutation that reduces (partially or completely) the activity of the sp polypeptide. In some embodiments, the mutant sp polypeptide comprises at least one mutation that reduces the activity of the sp polypeptide, wherein the reduced (partially or completely) activity of the sp polypeptide can confer determinacy.
The Solanaceae plant can be, for example, inbred, isogenic or hybrid, as long as the plant comprises a mutant sspl gene, a mutant sft gene, a mutant ssplgene and a mutant sft gene, a mutant sft gene and a mutant sp gene, a mutant sspl gene and a mutant sp gene, or a mutant ssplgene, a mutant sft gene, and a mutant sp gene. Plants in the Solanaceae family include, e.g., tomato, potato, eggplant, petunia, tobacco, and pepper. In some embodiments, the Solanaceae plant is a tomato plant. In some embodiments, the Solanaceae plant, e.g.
tomato plant, is not a variety.
In some embodiments, the Solanaceae plant comprises one wild-type copy of the SSP1 gene and one mutant copy of the sspl gene as described herein (is heterozygous for the mutant sspl gene). In some embodiments, the Solanaceae plant comprises two copies of a mutant sspl gene as described herein (is homozygous for the mutant sspl gene).
In some embodiments, the Solanaceae plant comprises a first mutant sspl gene as described herein

- 24 -and a second mutant sspl gene as described herein, wherein the first mutant sspl gene and the second mutant sspl gene are different (e.g., the first mutant sspl gene comprises a coding sequence comprising SEQ ID NO: 2 and the second mutant sspl gene comprises a coding sequence comprising SEQ ID NO: 3). In some embodiments, the Solanaceae plant comprises one copy of a mutant sspl gene as described herein and one copy of a mutant sp gene as described herein (is heterozygous for the mutant sspl gene and heterozygous for the mutant sp gene). In some embodiments, the Solanaceae plant comprises one copy of a mutant sspl gene as described herein and two copies of a mutant sp gene as described herein (is heterozygous for the mutant sspl gene and homozygous for the mutant sp gene).
In some embodiments, the Solanaceae plant comprises two copies of a mutant sspl gene as described herein and two copies of a mutant sp gene as described herein (is homozygous for the mutant sspl gene and homozygous for the mutant sp gene).
In some embodiments, the Solanaceae plant comprises one wild-type copy of a SFT
gene and one mutant copy of a sft gene as described herein (is heterozygous for the mutant sft gene). In some embodiments, the Solanaceae plant comprises two copies of a mutant sft gene as described herein (is homozygous for the mutant sft gene). In some embodiments, the Solanaceae plant comprises one copy of a mutant sft gene as described herein and one copy of a mutant sp gene as described herein (is heterozygous for the mutant sft gene and heterozygous for the mutant sp gene). In some embodiments, the Solanaceae plant comprises one copy of a mutant sft gene as described herein and two copies of a mutant sp gene as described herein (is heterozygous for the mutant sft gene and homozygous for the mutant sp gene). In some embodiments, the Solanaceae plant comprises two copies of a mutant sft gene as described herein and two copies of a mutant sp gene as described herein (is homozygous for the mutant sft gene and homozygous for the mutant sp gene).
In some embodiments, the Solanaceae plant comprises one wild-type copy of a SFT
gene and one mutant copy of a sft gene as described herein (is heterozygous for the mutant sft gene) and comprises one wild-type copy of the SSP1 gene and one mutant copy of the sspl gene as described herein (is heterozygous for the mutant sspl gene). In some embodiments, the Solanaceae plant comprises two copies of a mutant sft gene as described herein (is homozygous for the mutant sft gene) and comprises two copies of a mutant ssplgene as described herein (is homozygous for the mutant ssplgene). In some embodiments, the

- 25 -Solanaceae plant comprising a mutant sft gene (one or two copies) as described herein and a mutant sspl gene (one or two copies) further comprises one copy of a mutant sp gene as described herein (is heterozygous or homozygous for the mutant sft gene and the mutant sspl gene and heterozygous for the mutant sp gene). In some embodiments, the Solanaceae plant further comprises two copies of a mutant sp gene as described herein (is homozygous for the mutant sp gene). Exemplary, non-limiting genotype combinations include:
Combination # SSP1 genotype SFT genotype SP genotype 1 ssp-2129I+ +/+ sp/sp 2 ssp-610I+ +/+ sp/sp 3 +1+ sft-1906I+ sp/sp 4 ssp-2129I+ sft-1906I+ sp/sp 5 ssp-610I+ sft-1906I+ sp/sp 6 ssp-2129/ssp-2129 +/+ sp/sp 7 ssp-610/ssp-610 +/+ sp/sp 8 ssp-2129/ ssp-610 +/+ sp/sp 9 +1+ sft-1906/sft-1906 sp/sp In some embodiments, a genetically-altered Solanaceae plant (e.g., a tomato plant) provided herein is semi-determinate or semi-indeterminate. As used herein, a Solanaceae plant that is "semi-determinate" is a plant that (1) has a sympodial index that is less than 3 and (2) undergoes termination of the sympodial meristem. As used herein, a Solanaceae plant that is "semi-indeterminate" is a plant that (1) has a sympodial index that is less than 3 and (2) continuously produces sympodial shoots (the sympodial meristem does not undergo termination). The term "sympodial index", as used herein, refers to the number of leaves per sympodium (i.e., the number of leaves between successive clusters of flowers).
In some

- 26 -embodiments, the genetically-altered Solanaceae plant has a sympodial index of less than 3, less than 2.9, less than 2.8, less than 2.7, less than 2.6, less than 2.5, less than 2.4, less than 2.3, less than 2.2, less than 2.1, less than 2, less than 1.9, less than 1.8, less than 1.7, less than 1.6, or less than 1.5. In some embodiments, the genetically-altered Solanaceae plant has a sympodial index of between 1 and 3, 1.5 and 3, 1 and 2.5, 1.5 and 2.5, 1 and 2, or 1.5 and 2.
Solanaceae plant cells are also contemplated herein. A Solanaceae plant cell may comprise any genotype described herein in the context of the Solanaceae plant (e.g., a Solanaceae plant cell heterozygous for a mutant sft gene and a mutant sspl gene or a Solanaceae plant cell homozygous for a mutant sspl gene and a mutant sp gene).
In some embodiments, the Solanaceae plant cell is isolated. In some embodiments, the Solanaceae plant cell is a non-replicating plant cell.
In some embodiments, any of the Solanaceae plants described above have an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant (e.g., a Solanaceae plant comprising two copies of a wild-type SP gene), to a determinate Solanaceae plant (e.g., a Solanaceae plant comprising a mutant sp gene), or to both a wild-type Solanaceae plant and a determinate Solanaceae plant. In some embodiments, any of the Solanaceae plants described above have a higher yield than a corresponding wild-type Solanaceae plant. In some embodiments, a Solanaceae plant comprising two copies of a mutant sspl gene as described herein and two copies of a wild-type SP gene as described herein has altered flowering time compared to a wild-type Solanaceae plant. In some embodiments, a Solanaceae plant comprising one copy of a mutant sspl gene as described herein and two copies of a mutant sp gene as described herein is semi-determinate or semi-indeterminate. In some embodiments, a Solanaceae plant comprising two copies of a mutant sspl gene as described herein and two copies of a mutant sp gene as described herein is semi-determinate or semi-indeterminate.
Food products are also contemplated herein. Such food products comprise a Solanaceae plant part, such as a fruit (e.g., a tomato fruit). Non-limiting examples of food products include sauces (e.g., tomato sauce or ketchup), purees, pastes, juices, canned fruits, and soups. Food products may be produced or producible by using methods known in the art.
Isolated polynucleotides are also described herein, including wild-type and mutant alleles of the SSP1 gene, and specifically, two mutant alleles designated herein as ssp-2129

- 27 -and ssp-610. Isolated polynucleotides including wild-type and mutant alleles of the SFT gene are also contemplated, e.g., sft-1906. Isolated polynucleotides can comprise, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 2; a portion of SEQ
ID NO: 2 that exhibits substantially the same activity as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 2; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ
ID NO: 2; a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651of SEQ ID
NO: 2 (CGGACGTCAACTGCTCTATTT, SEQ ID NO: 12); an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 2; an orthologue or homologue of the nucleic acid sequence of positions 631 to 651of SEQ ID NO: 2; a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 3; a portion of SEQ ID NO: 3 that exhibits substantially the same activity as a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 3; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 3;
a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651of SEQ ID NO: 3 (CGGACGTCAATTGCTCCATTT, SEQ ID NO: 13); an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 3; or an orthologue or homologue of the nucleic acid sequence of positions 631 to 651of SEQ ID NO: 3. In some embodiments, the isolated polynucleotide comprises a mutant sspl gene that includes a C to T
mutation at position 641 of SEQ ID NO: 1, a C to T mutation at position 647 of SEQ ID NO:
1, or a C to T mutation at position 641 and position 647 of SEQ ID NO: 1. In some embodiments, the isolated polynucleotide comprises a nucleotide sequence that encodes the polypeptide of SEQ
ID NOs: 5 or 6 or a nucleotide sequence that encodes a polypeptide that comprises SEQ ID
NOs: 14 or 15. In some embodiments, the isolated polynucleotide comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in a SAP
motif, wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, the SAP
motif with the at least one mutation has the amino acid sequence SEQ ID NO: 14 or SEQ ID
NO: 15. In some embodiments, the isolated polynucleotide comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in the SAP
motif or in the two amino acids flanking the N-terminal position of the SAP
motif and the

- 28 -one amino acid flanking the C-terminal position of the SAP motif, which includes the phosphorylation site for Ca-dependent protein kinases (CDPKs), wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, isolated polynucleotides can comprise, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO:
20;_a portion of SEQ ID NO: 20 that exhibits substantially the same activity as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 20; a nucleic acid (e.g., DNA) having at least 70%, at least 80%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 20; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 20. In some embodiments, the isolated polynucleotide comprises a mutant sft gene comprising a G to A mutation at position 394 of SEQ ID NO: 20. In some embodiments, the isolated polynucleotide comprising a mutant sft gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NO:
21. In some embodiments, the isolated polynucleotide comprises a mutant sft gene comprising a nucleotide sequence that encodes a mutant sft polypeptide that comprises a Val to Met mutation at position 132 of SEQ ID NO: 19. In some embodiments, the isolated polynucleotide is a cDNA. Such isolated polynucleotides can be used, for example, in methods of producing genetically-altered plants, such as genetically-altered semi-determinate or semi-indeterminate plants.
Isolated polypeptides (e.g., proteins) are also described herein, including wild-type and mutant sspl polypeptides, and specifically, the polypeptides encoded by the two mutant alleles ssp-2129 and ssp-610. Isolated polypeptides also include wild-type and mutant sft polypeptides, such as those encoded by the mutant allele sft-1906. In some embodiments, the isolated polypeptide comprises, for example, the sequence of SEQ ID NO: 5; a portion of SEQ ID NO: 5 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ ID NO: 5; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 5; the amino acid sequence of positions 211 to 217 in SEQ ID NO:
5 (RTSTALF, SEQ ID NO: 14); an orthologue or homologue of the polypeptide having the sequence of SEQ ID NO: 5; an orthologue or homologue of the amino acid sequence of positions 211 to 217 in SEQ ID NO: 5 (RTSTALF, SEQ ID NO: 14); a polypeptide (e.g., a

- 29 -

30 PCT/US2013/070825 protein) having the sequence of SEQ ID NO: 6; a portion of SEQ ID NO: 6 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ
ID NO: 6; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 6;
the sequence of positions 211 to 217 in SEQ ID NO: 6 (RTSIAPF, SEQ ID NO: 15);
an orthologue or homologue of the polypeptide having the sequence of SEQ ID NO:
6; or an orthologue or homologue of the polypeptide sequence of positions 211 to 217 in SEQ ID NO:
6 (RTSIAPF, SEQ ID NO: 15). In some embodiments, the isolated polypeptide comprises a Thr to Ile mutation at position 214 of SEQ ID NO: 4 or a Pro to Leu mutation at position 216 of SEQ ID NO: 4, or a Thr to Ile mutation at position 214 and a Pro to Leu mutation at position 216 of SEQ ID NO: 4. In some embodiments, the isolated polypeptide comprises a mutant sspl protein comprising an amino acid sequence with at least one mutation in a SAP
motif, wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, the SAP
motif with the at least one mutation has the amino acid sequence SEQ ID NO: 14 or SEQ ID
NO: 15. In some embodiments, the isolated polypeptide comprises a mutant sspl protein comprising an amino acid sequence with at least one mutation in a SAP motif or in the two amino acids flanking the N-terminal position of the SAP motif and the one amino acid flanking the C-terminal position of the SAP motif, which includes the phosphorylation site for Ca-dependent protein kinases (CDPKs), wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy.
An isolated polypeptide may also comprise the sequence of SEQ ID NO: 21; a portion of SEQ ID NO: 21 that exhibits substantially the same activity as a polypeptide (e.g., a protein) having the sequence of SEQ ID NO: 21; an amino acid sequence having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 21; an orthologue or homologue of the polypeptide having the sequence of SEQ ID NO: 21. Such isolated polypeptides can be used, for example, in methods of producing genetically-altered plants, such as genetically-altered semi-determinate or semi-indeterminate plants.
Also described herein are methods of modifying flowering time and shoot architecture in a Solanaceae plant, such as tomato, particularly suppressing sympodial shoot termination, which results in increased number of leaves in a Solanaceae plant compared to the number of leaves in corresponding determinate (e.g., a sp mutant) plants maintained under the same conditions, but fewer leaves than the number of leaves in corresponding indeterminate wild-type plants (see, e.g., Figure 2 and 4).
Methods described are methods of producing a genetically-altered Solanaceae plant, such as a semi-determinate (SD) or semi-indeterminate (SID) plant; and/or a Solanaceae plant with an altered flowering time and shoot architecture, increased yield, higher quality products (e.g., fruits), and/or products (e.g., fruits) with different compositions (e.g., brix, also known as enhanced soluble solids or sugar concentration in the fruits,) compared to a wild-type Solanaceae plant. In one embodiment, a method of producing a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant comprises: (a) introducing a mutant sspl gene into a Solanaceae plant that comprises a mutant sp gene or producing a mutant sspl gene in a Solanaceae plant that comprises a mutant sp gene, thereby producing a genetically-altered plant that comprises the mutant sspl gene and the mutant sp gene; (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is homozygous for the mutant sspl gene and the mutant sp gene and is semi-determinate or semi-indeterminate. In another embodiment, a method of producing a genetically-altered Solanaceae plant with an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant comprises: (a) introducing a mutant sspl gene into a Solanaceae plant that comprises a mutant sp gene or producing a mutant sspl gene in a Solanaceae plant that comprises a mutant sp gene, thereby producing a genetically-altered plant that comprises the mutant sspl gene and the mutant sp gene; (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous for the mutant sspl gene and homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is heterozygous for the mutant sspl gene and homozygous for the mutant sp gene and has an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant.

- 31 -In other embodiments, the method comprises:
(a) introducing a mutant sft gene into a Solanaceae plant containing a mutant sspl gene or introducing a mutant sspl gene into a Solanaceae plant containing a mutant sft gene, thereby producing a genetically-altered Solanaceae plant containing a mutant sft gene and a mutant sspl gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sft gene and heterozygous or homozygous for the mutant sspl gene. In some embodiments, the plant produced in (b) is heterozygous for the mutant sft gene and heterozygous for the mutant sspl gene.
In specific embodiments of the method, the mutant sspl gene comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 2; a coding sequence comprising a portion of SEQ ID NO: 2 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO:
2; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 2; a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651of SEQ ID NO: 2 (CGGACGTCAACTGCTCTATTT, SEQ ID NO: 12); a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 2; an orthologue or homologue of the nucleic acid sequence of positions 631 to 651of SEQ ID NO: 2; a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 3; a coding sequence comprising a portion of SEQ ID NO:
3 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 3; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 3; a nucleic acid (e.g., DNA) having the sequence of positions 631 to 651 of SEQ ID NO: 3 (CGGACGTCAATTGCTCCATTT, SEQ
ID NO: 13); a coding sequence comprising an orthologue or homologue of the nucleic acid

- 32-having the sequence of SEQ ID NO: 3; or an orthologue or homologue of the nucleic acid sequence of positions 631 to 651 of SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO:
25; a portion of SEQ ID NO: 25 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 25; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 25; an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 25; a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 26; a portion of SEQ ID NO: 26 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 26; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO:
26; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO:
26. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at position 647 of SEQ ID NO: 1, or a C to T
mutation at position 641 and position 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NOs:
5 or 6 or a nucleotide sequence that encodes a polypeptide that comprises SEQ ID NOs: 14 or 15. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in a SAP motif, wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy. In some embodiments, the SAP motif with the at least one mutation has the amino acid sequence SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises at least one mutation in a SAP motif or in the two amino acids flanking the N-terminal position of the SAP motif and the one amino acid flanking the C-terminal position of the SAP motif, which includes the phosphorylation site for Ca-dependent protein kinases (CDPKs), wherein the at least one mutation alters flowering time and shoot architecture of the Solanaceae plant, e.g., by conferring semi-determinacy.

- 33 -In some embodiments, the mutant sft gene comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 20;_a coding sequence comprising a portion of SEQ ID NO: 20 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 20;
a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 20; or a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO:20. In some embodiments, the mutant sft gene comprises a G to A mutation at position 394 of SEQ ID NO: 20. In some embodiments, the mutant sft gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NO:
21. In some embodiments, the mutant sft gene comprises a nucleotide sequence that encodes a mutant sft polypeptide comprising a Val to Met mutation at position 132 of SEQ ID NO:
19. In some embodiments, the mutant sft gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 17; a portion of SEQ ID NO: 17 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 17; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID
NO: 17; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID
NO: 17.
In specific embodiments, the sp mutant gene comprises, for example, a coding sequence comprising a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 8; a coding sequence comprising a portion of SEQ ID NO: 8 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID
NO: 8; a coding sequence comprising a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identity with the sequence of SEQ ID NO: 8; or a coding sequence comprising an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises a C to T mutation at position 227 of SEQ ID NO: 7. In some embodiments,

- 34 -the mutant sp gene comprises at least one mutation that reduces the activity of a sp protein encoded by the mutant sp gene. In some embodiments, the mutant sp gene comprises at least one mutation that reduces (partially or completely) the activity of a sp protein encoded by the mutant sp gene, wherein the reduced activity can confer determinacy. In some embodiments, the mutant sp gene comprises a nucleotide sequence that encodes a polypeptide of SEQ ID NO: 10. In some embodiments, the mutant sp gene comprises, for example, a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 23; a portion of SEQ ID NO: 23 that exhibits substantially the same activity (e.g., encoding the same polypeptide or substantially the same polypeptide that has the same activity) as a nucleic acid (e.g., DNA) having the sequence of SEQ ID NO: 23; a nucleic acid (e.g., DNA) having at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99%
identity with the sequence of SEQ ID NO: 23; or an orthologue or homologue of the nucleic acid having the sequence of SEQ ID NO: 23.
Alternatively, a method of producing a genetically-altered Solanaceae plant, such as a genetically-altered semi-determinate or semi-indeterminate Solanaceae plant, comprises: (a) introducing a mutant sspl gene into a Solanaceae plant part (e.g., a cell, a leaf or seed) that comprises a mutant sp gene or producing a mutant sspl gene in a Solanaceae plant part (e.g., a cell, a leaf or seed) that comprises a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part that contains the mutant sspl gene and the mutant sp gene; (b) maintaining the genetically-altered Solanaceae plant part containing the mutant sspl gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant that contains the mutant sspl gene and a mutant sp gene; (c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is homozygous for the mutant sspl gene and the mutant sp gene and is semi-determinate or semi-indeterminate. In another embodiment, a method of producing a genetically-altered Solanaceae plant with an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant comprises: (a) introducing a mutant sspl gene into

- 35 -a Solanaceae plant part (e.g., a cell, a leaf or seed) that comprises a mutant sp gene or producing a mutant sspl gene in a Solanaceae plant part (e.g., a cell, a leaf or seed) that comprises a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part that contains the mutant sspl gene and the mutant sp gene; (b) maintaining the genetically-altered Solanaceae plant part containing the mutant sspl gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant that contains the mutant sspl gene and a mutant sp gene; (c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous for the mutant sspl gene and homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is heterozygous for the mutant sspl gene and homozygous for the sp gene and has an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant. The mutant sspl gene and the mutant sp gene can be as described above.
In some embodiments, the method of producing a genetically-altered Solanaceae plant comprises:
(a) introducing a mutant sft gene into a Solanaceae plant part containing a mutant sspl gene or introducing a mutant sspl gene into a Solanaceae plant part containing a mutant sft gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant sft gene and the mutant sspl gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sft gene and a mutant sspl gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sft gene and the mutant sspl gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sft gene and the mutant sspl gene; and (c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sft gene and heterozygous or homozygous for the mutant sspl gene, thereby producing a genetically-altered Solanaceae plant. In some embodiments, the

- 36 -plant produced in (c) is heterozygous for the mutant sft gene and heterozygous for the mutant ssp/ gene.
In any of the methods described herein, the mutant sspl gene or the mutant sft gene can be introduced into a Solanaceae plant or a plant part or produced in a Solanaceae plant or plant part by a method known to those of skill in the art, such as Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, electroporation, mutagenesis (e.g., by ethyl methanesulfonate or fast neutron irradiation), TILLING (Targeting Induced Local Lesions in Genomes), conventional marker-assisted introgression, and nuclease mediated recombination (e.g., use of custom-made restriction enzymes for targeting mutagenesis by gene replacement, see, e.g., CRISPR-Cas9: Genome engineering using the CRISPR-Cas9 system. Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA, Zhang F. Nat Protoc. 2013 Nov;8(11):2281-308;
TALEN endonucleases: Nucleic Acids Res. 2011 Jul;39(12):e82. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA
targeting.
Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, Schmidt C, Baller JA, Somia NV, Bogdanove AJ, Voytas DF and Plant Biotechnol J. 2012 May;10(4):373-89. Genome modifications in plant cells by custom-made restriction enzymes. Tzfira T, Weinthal D, Marton I, Zeevi V, Zuker A, Vainstein A.). Genetically-altered Solanaceae plants, such as genetically-altered semi-determinate or semi-indeterminate Solanaceae plants, produced by or producible by a method described herein are also claimed.
Alternatively, a method of producing a semi-determinate or semi-indeterminate Solanaceae plant or a Solanaceae plant having one or more other characteristics described herein (increased yield, brix, etc.) comprises: (a) reducing (partially or completely) function of a wild-type SSP1 gene comprising SEQ ID NO: 1 in a Solanaceae plant homozygous for a mutant sp gene, thereby producing a semi-determinate or semi-indeterminate Solanaceae plant. In some embodiments, reducing the function of the wild-type SSP1 gene comprising SEQ ID NO: 1 comprises performing any of the following methods of RNA-interference (e.g., administering to the Solanaceae plant a micro-RNA or a small interfering (si)-RNA or hairpin RNA) or translational blocking (e.g., administering to the Solanaceae plant a morpholino). Methods of RNA-interference and translational blocking are well-known in the art. Methods of producing micro-RNAs, si-RNAs, and morpholinos are well-known in

- 37 -the art and can involve use of the nucleotides sequences provided herein, e.g., SEQ ID NO: 1.
The mutant sp gene can be any mutant sp gene described herein. In some embodiments, the method further comprises (b) reducing (partially or completely) function of a wild-type SFT
gene comprising SEQ ID NO: 16 or a coding sequence comprising SEQ ID NO: 18.
In some embodiments, reducing the function of the wild-type SFT gene comprises performing any of the above methods of RNA-interference or translational blocking.
Further aspects and embodiments of the disclosure are provided below.
In some embodiments, the disclosure provides a genetically-altered Solanaceae plant comprising a mutant suppressor of spl (sspl) gene and a mutant self pruning (sp) gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO:
15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sp gene encodes a mutant sp polypeptide comprising the sequence of SEQ ID NO: 10. In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is isogenic. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered Solanaceae plant is homozygous for the mutant sspl gene and homozygous for the mutant sp gene. In some embodiments, the genetically-altered Solanaceae plant is semi-determinate.
Other aspects relate to a seed for producing a genetically-altered Solanaceae plant as described in any of the embodiments provided in the preceding paragraph.

- 38 -Yet other aspects relate to a method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant sspl gene into a Solanaceae plant containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant containing a mutant sspl gene and a mutant sp gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sspl gene and heterozygous or homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant. In some embodiments, the method of producing a genetically-altered Solanaceae plant comprises:
(a) introducing a mutant sspl gene into a Solanaceae plant part containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant sspl gene and the mutant sp gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sspl and a mutant sp gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant sspl gene and heterozygous or homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant. In some embodiments, the genetically-altered Solanaceae plant is homozygous for the mutant sspl gene and homozygous for the mutant sp gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP
motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID
NO: 14 or SEQ ID NO: 15 In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some

- 39 -embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID
NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sp gene encodes a mutant sp polypeptide comprising the sequence of SEQ ID NO: 10. In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, in (a), the mutant sspl gene is introduced into a plant or a plant part by a method selected from the group consisting of: Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation. In some embodiments, in (a), the mutant sspl gene is introduced into a plant or a plant part by nuclease mediated recombination. In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered Solanaceae plant is semi-determinate.
Another aspect relates to a genetically-altered Solanaceae plant produced by the method of any of the embodiments provided in the preceding paragraph.
Other aspects relate to a genetically-altered Solanaceae plant comprising a mutant suppressor of spl (sspl) gene and a mutant single flower truss (sft) gene. In some embodiments, the genetically-altered Solanaceae plant comprises a mutant suppressor of spl (sspl) gene and a mutant single flower truss (sft) gene, wherein the mutant genes are heterozygous. In some embodiments, the sft gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 20. In some embodiments, the sft gene comprises SEQ ID NO: 20. In some embodiments, the mutant sspl gene comprises a coding sequence having a nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3 or encodes a mutant sspl protein that comprises SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that comprises SEQ ID NO: 2 or SEQ
ID NO: 3 or encodes a mutant sspl protein that comprises SEQ ID NO: 5 or SEQ ID NO: 6.
In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID

- 40 -NO: 1, a C to T mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO:
3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3. In some embodiments, the genetically-altered Solanaceae plant is semi-determinate. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a tomato (Solanum lycopersicum) plant.
In some embodiments, the the genetically-altered semi-determinate Solanaceae plant is inbred. In some embodiments, the mutant sft gene is sft-1906.
Yet another aspect relates to a seed for producing a genetically-altered Solanaceae plant as provided in any of the embodiments in the proceding paragraph.
Other aspects relate to genetically-altered Solanaceae plant comprising a mutant self-pruning (sp) gene that comprises a coding sequence having the nucleic acid sequence of SEQ
ID NO: 8. and a mutant single flower truss (sft) gene that comprises SEQ ID
NO: 20. In some embodiments, the mutant self-pruning (sp) gene is heterozygous and the mutant single flower truss (sft) gene is heterozygous.
Further aspects relate to a genetically-altered Solanaceae plant comprising a mutant self-pruning (sp) gene that comprises the nucleic acid sequence of SEQ ID NO:
8. and a mutant single flower truss (sft) gene that comprises SEQ ID NO: 20, wherein the mutant genes are heterozygous.
Another aspect relates to a method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant sft gene into a Solanaceae plant containing a mutant ssplgene, thereby producing a genetically-altered Solanaceae plant containing a mutant sspl gene and a mutant sft gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sft gene, thereby producing a genetically-altered Solanaceae plant.
In some embodiments, the method of producing a genetically-altered Solanaceae plant comprises:

- 41 -(a) introducing a mutant sft gene into a Solanaceae plant part containing a mutant sspl gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant sspl gene and the mutant sft gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sspl and a mutant sft gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sft gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sft gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sft gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate.
Other aspects relate to a genetically-altered Solanaceae plant produced by a method provided in the preceding paragraph. Another aspect relates to a genetically-altered Solanaceae plant heterozygous for a mutant suppressor of spl (sspl) gene and homozygous for a mutant single flower truss (sft) gene, wherein the genetically-altered Solanaceae plant has an altered yield compared to the yield of a wild-type Solanaceae plant.
Other aspects relate to a seed for producing a genetically-altered Solanaceae plant provided in the preceding paragraph.
Yet other aspects relate to a genetically-altered semi-determinate Solanaceae plant homozygous for a mutant suppressor of spl (sspl) gene and homozygous for a mutant self pruning (sp) gene. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif.
In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO:
14 or SEQ
ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the

- 42 -nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3.
In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is isogenic. In some embodiments, the genetically-altered semi-determinate Solanaceae plant is inbred.
Other aspects relate to a seed for producing a genetically-altered semi-determinate Solanaceae plant as described in any of the embodiments provided in the preceding paragraph.
Another aspect relates to a method of producing a genetically-altered semi-determinate Solanaceae plant comprising:
(a) introducing a mutant sspl gene into a Solanaceae plant containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant containing a mutant sspl gene and a mutant sp gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate. In some embodiments, the method of producing a genetically-altered semi-determinate Solanaceae plant comprises:
(a) introducing a mutant sspl gene into a Solanaceae plant part containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant sspl gene and the mutant sp gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant sspl and a mutant sp gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant sspl gene and the mutant sp gene;

- 43 -(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant sspl gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP
motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ
ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T mutation at position 641 of SEQ ID
NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ
ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8. In some embodiments, in (a), the mutant sspl gene is introduced into a plant or a plant part by a method selected from the group consisting of: Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation. In some embodiments, the Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the Solanaceae plant is inbred.
Another aspect relates to a genetically-altered semi-determinate Solanaceae plant produced by a method provided in the preceding paragraph.
Other aspects relate to a isolated polynucleotide encoding a mutant sspl protein having the amino acid sequence of SEQ ID NO: 5 or SEQ ID NO: 6. In some embodiments, the isolated polynucleotide comprises the nucleic acid sequence of SEQ ID NO:
2 or SEQ ID
NO: 3.

- 44 -Yet another aspect relates to a genetically-altered Solanaceae plant heterozygous for a mutant suppressor of spl (sspl) gene and homozygous for a mutant self pruning (sp) gene, wherein the genetically-altered Solanaceae plant has an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID
NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C to T
mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C
to T
mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8.
In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 8. In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is isogenic. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered Solanaceae plant is semi-determinate.
Other aspects relate to a seed for producing a genetically-altered Solanaceae plant of any of the embodiments provided in the preceding paragraph.
Yet another aspect relates to a genetically-altered Solanaceae plant homozygous for a mutant suppressor of spl (sspl) gene, wherein the genetically-altered Solanaceae plant has an altered flowering time compared to a wild-type Solanaceae plant. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif. In some embodiments, the mutant sspl gene comprises a nucleic acid sequence that encodes a mutant sspl protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15. In some embodiments, wherein the mutant sspl gene encodes a mutant sspl polypeptide comprising the sequence of SEQ ID

- 45 -NO: 5 or SEQ ID NO: 6. In some embodiments, the mutant sspl gene comprises a C
to T
mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID
NO: 1, or a C
to T mutation at position 641 and 647 of SEQ ID NO: 1. In some embodiments, the mutant sspl gene comprises a coding sequence having the nucleic acid sequence of SEQ
ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sspl gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3. In some embodiments, the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8.
In some embodiments, the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 8. In some embodiments, the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant. In some embodiments, the genetically-altered Solanaceae plant is isogenic. In some embodiments, the genetically-altered Solanaceae plant is inbred. In some embodiments, the genetically-altered Solanaceae plant is homozygous for a wild-type SELF
PRUNING (SP) gene.
Other aspects relate to a seed for producing a genetically-altered Solanaceae plant of any embodiment provided in the preceding paragraph.
EXAMPLES
Example 1: Identifying mutant plants providing semi-determinate or semi-indeterminate shoot architecture phenotypes The crop plant tomato (Solanum lycopersicum) was used to identify mutant plants with a semi-determinate phenotype. The previously generated tomato EMS
mutation library in the determinate M82 background was used in the methods described below (Menda N Y et al. 2004. Plant J 38.861-72). The mutation library was previously generated by treating seeds with ethyl methanesulfonate (0.5 percent EMS for 12 h; LD15), producing an M1 generation.
These seeds were self-crossed to produce 13,000 M2 families with random mutations in unknown locations.
The M82 determinate (M82D) isogenic background is known to contain a mutation in the SELF PRUNING (SP) gene (Pnueli, et al. Development 1989), resulting in a tomato plant with a determinate (D) growth habit. In D-type plants, the sympodial shoots produce progressively fewer leaves until the plant terminates growth in two successive inflorescences.

- 46 -In contrast, indeterminate (ID) tomato plants generate successive sympodial units (SYM) that produce three leaves each, and SYMs continue to reiterate to generate an ID
shoot. The M2 EMS mutation library described above was generated in an M82D background and self-crossed to produce approximately six thousand independent mutant tomato plants and many fertile mutants which contained mutations at unidentified locations which were carried over into the M3 inbred generation. These lines were screened in both the M2 and M3 generations for homozygous recessive mutant phenotypes that partially suppressed the determinate growth phenotype of the M82D background, resulting in a semi-determinate shoot architecture phenotype. In particular, flowering time, flower production per inflorescence, and shoot architecture were examined. Single lines were identified that contained at least one M3 plant with a semi-determinate phenotype.
Two M2 families, e2129 and e610, were identified that had a low frequency (less than or equal to ¨25%) of plants with an altered flowering time and shoot architecture resembling a semi-determinate phenotype. Figure 2 shows that homozygosity for the e2129 mutant (designated ssp-2129) in the sp-/- M82 mutant background suppressed sympodial shoot termination compared to the sp-/- mutant alone. Figure 2, left, depicts a sp-/-determinate plant where leaf number in each sympodial shoot gradually decreases, leading to shoot termination in two successive inflorescences. Figure 2, right, depicts an indeterminate wild-type plant where each sympodial unit produces three leaves and this process continues indefinitely.
Figure 2, center, depicts an ssp-2129; sp-/- double mutant with semi-determinate sympodial shoot development, such that each sympodial shoot unit now produces two leaves, instead of the typical three leaves produced in wild-type indeterminate tomato plants.
Figure 3 shows quantification of internode length among 4 inflorescences in determinate sp-/-mutants (M82D), semi-determinate ssp-2129; sp-/- double mutants and ssp-610; sp-/-double mutants (ssp-2129 and ssp-610, respectively), and wild-type plants (M82ID). The p-value was measured by a student's t-test against M82D and M82ID (P<0.01 for ssp-2129 and ssp-610, indicated by **).
Figure 4 shows quantification of leaf numbers produced by the primary shoot meristem (PSM) indicating flowering time and sympodial units in both sp-/- and ssp-2129;sp-/-3 0 backgrounds. Note that ssp-2129;sp-/- double mutant plants displayed a delayed flowering time as indicated by the increased leaf numbers in the PSM compared to sp-/-single mutant

- 47 -plants. ssp-2129;sp-1- plants also displayed more leaves within sympodial units compared to sp4-plants, but fewer leaves within sympodial units compared to wild-type indeterminate plants. This semi-determinacy was observed for a second mutant allele, ssp-6/0 in the sp mutant background.
To identify the genetic mutation(s) resulting in the altered flowering time and shoot architecture in these two families, one family, e2129, was further analyzed using previously reported map-based cloning procedures (Lippman et al, PLoS Biology 2008). A
single M3 ssp-2129 mutant plant was crossed to a wild-type species, S. piminellifolium, with known polymorphisms throughout the genome (The Tomato Genome sequence, Nature, 2012). The Fl hybrid was then self-crossed to produce an F2 generation of progeny plants segregating for both the ssp-2129 mutation and the DNA polymorphisms between M82 and S.
pimpinellifolium. Approximately 200 F2 plants were scored for altered flowering time and semi-determinate shoot architecture phenotypes, reflecting homozygosity of the ssp-2129 mutation.
The homozygous mutant F2 plants (those with the altered flowering time and shoot architecture) were then genotyped with evenly spaced polymorphic DNA markers spanning all 12 tomato chromosomes using the bulk segregant mapping technique. DNA was isolated from at least 20 mutant plants (those with the altered flowering time and shoot architecture phenotype) and from 20 wild-type plants. DNA from the mutant plants was pooled to form pool 1 and DNA from the wild-type plants was pooled to form pool 2. A 10 centiMorgan (cM) scan was performed to identify M82 polymorphisms that were over-represented in pool 1 relative to pool 2, reflective of the origin of the ssp-2129 mutation in the M82 background.
Over-representation of polymorphisms in pool 1 was found within at 2Mb mapping interval between PCR markers 4029 and 4230, corresponding to 40M and 42M on chromosome 2, as shown in Figure 5.
To find the location of the mutation within this region, RNA was extracted from wild-type and mutant plants. This RNA was converted to cDNA and sequenced using Illumina sequencing. The sequencing reads were then mapped to the known gene annotations and only those within the 2 Mb region described above were analyzed. A large number of C to T
mutations were observed at a single location, position 647 according to SEQ ID
NO: 2 which corresponds to amino acid position 216 according to SEQ ID NO: 5, within the C-terminus of

- 48 -the tomato orthologue of the Arabidopsis FLOWERING LOCUS D (FD) gene. The tomato orthologue is referred herein as SUPPRESSOR OF SP1 (SSP1).
Following identification of the mutation present in the e2129 family, the e610 mutant, a confirmed allele in the SSP1 gene by complementation test with the ssp-2129 mutant as described below, was examined to see if the unknown mutation in that family also occurred in the SSP1 gene. Heterozygous plants with one copy of ssp-2129 and one copy of ssp-610 phenocopied the ssp-2129 homozygous mutant and the ssp-610 homozygous mutant plant, indicating that these two mutations were in the same gene. Following the complementation test, DNA was extracted from e610 mutant plants and Sanger sequencing was performed to determine if the SSP1 gene locus contained a mutation. A 'C' to 'T' mutation was identified in SSP1 at position 641 according to SEQ ID NO: 3 which corresponds to amino acid position 214 according to SEQ ID NO: 6.
Figure 5 summarizes the map-based cloning of the SSP1 gene discussed above.
Figure 5A shows the SSP1 map position on chromosome 2 localized to a 2.1M interval between markers inde14029 (4029x10k) and inde14230 (4230 x20k) was defined by bulk segragant analysis. An F2 mapping population segregating for the recessive sspl mutant was generated by self-pollinating an S. pimpinellifolium sp- x sspl sp- (cv. M82) Fl plant.
At least four insertion-deletion (indel) PCR markers were used for each of the 12 tomato chromosomes on a pool of DNA composed of 20 sspl mutant individuals compared to a pool of DNA
composed of 20 wild-type individuals. Deconvolution of the mutant pool revealed a recombination-defined internal of 40M-42.1M on chromosome 2. Figure 5B depicts Illumina RNA-sequencing (RNA-seq), which was performed on RNA isolated from reproductive meristems and used to identify and reconstruct DNA protein coding sequences from expressed genes in the mapping interval. RNA-seq reads revealed eight genes (positions indicated by arrows) expressed in meristems. Single nucleotide polymorphisms (SNP) were identified relative to the reference annotation for the eight expressed genes, which revealed a C-to-T DNA change in the coding sequence of 5o1yc02g083520 of the ssp-2129 mutant allele. Sequencing of the ssp-610 allele revealed a C-to-T change at a nearby location in the coding sequence of 5o1yc02g083520. Each mutation causes a missense amino acid changes in the conserved SAP motif of the closest tomato homolog of the Arabidopsis flowering gene FLOWERING LOCUS D (FD), encoding a bZIP transcription factor.

- 49 -A summary of the sequences of both the wild-type SSP1 gene and the two mutant alleles, ssp-2129 and ssp-610, is provided in Figures 6 and 7, which depict ClustalW analyses of the nucleotide and amino acid sequences, respectively. The nucleotide and amino acid sequences for wild-type SSP1, mutant ssp-2129, mutant ssp-610, wild-type SP, and mutant sp are also listed after Example 2. Mutations present in the nucleotide and amino acid sequences of each mutant nucleic acid or protein are indicated as underlined and bolded nucleotides or amino acids.
Example 2: Identifying mutant plants providing desirable plant traits such as brix, brix yield, red fruit yield, and total yield A mutant SINGLE FLOWER TRUSS (SFT) gene, sft-1906, was identified in tomato plants using the same techniques described above in Example 1. sft-1906 was determined to have a mutation of Valine to Methionine at position 132. A summary of the nucleotide and amino acid sequences of the wild-type SFT gene and the mutant allele, sft-1906, is provided in Figures 9 and 10, which depict ClustalW analyses of the nucleotide and amino acid sequences, respectively. The nucleotide and amino acid sequences for the wild-type SFT
gene and the mutant allele, sft-1906, are also listed below. Mutations present in the nucleotide and amino acid sequences of each mutant nucleic acid or protein are indicated as underlined and bolded nucleotides or amino acids.
Tomato plants carrying sft-1906 were crossed with tomato plants carrying ssp2120 or ssp610 and compared to plants having other genetic backgrounds (M82 (sp), ssp2129 x M82 Fl, ssp610 x M82 Fl, and sft1906 x M82 F1). It was found that all of the combined mutant tomato plants (ssp2129 x sft1906, ssp610 x sft1906, ssp2129 x M82 Fl, ssp610 x M82 Fl, and sft1906 x M82 Fl) had improved Brix Yield, Brix, Red Fruit Yield, and Total Yield compared to M82 plants (FIG. 8). Data on red and total fruit yield were generated from replicated field trials and Brix data was obtained using a refractometer (see below). Tomato plants doubly heterozygous for both an sspl mutation and a sft mutation had the highest improvement in Brix Yield, Brix, Red Fruit Yield, and Total Yield (FIG. 8).
Tomato plants were grown under wide (1 plant per m2) spacing using drip irrigation for field trials. When all plants have 80% or more red fruits, total fruits and total red fruits were measured by weight (kg) per plant. Ten red fruits collected randomly from each plant were used for

- 50 -determine Brix value, which was measured by a digital Brix refractometer (ATAGO PAL-1).
Brix-yield was calculated by the multiplied output of Brix and total fruit yield measured in g/m2. Each genotype in the experiments was represented by a minimum of 15 replicates in two locations (Riverhead, NewYork USA and Akko, Israel). All plants were transplanted in a completely randomized design.
Nucleic Acid and Polypeptide Sequences Nucleic Acid >SSP1 coding sequence ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCC
TCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATT
AATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCAT
GATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGG
CCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCT
ACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGG
CAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACA
GAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCT
GCTAGATCAAGAGCTAGAAAGCAGGCTTATATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGTTACGAGTAGATGCAGCT
AATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAACTGCTCCATTTTGA (SEQ ID NO: 1) >ssp-2129 coding sequence ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCC
TCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATT
AATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCAT
GATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGG
CCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCT
ACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGG
CAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACA
GAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCT
GCTAGATCAAGAGCTAGAAAGCAGGCTTATATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGTTACGAGTAGATGCAGCT
AATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAACTGCTCTATTTTGA (SEQ ID NO: 2) >ssp-610 coding sequence ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCC

- 51 -TCATCTCATTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATT
AATCTTTCTTCACTTCAAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCAT
GATCATAATCATCAAGCTGCTAATTTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGG
CCTTTTGCTAATGAATCTTCACCAGCAGCAGCAGCAGCAGCAGCCTCCCCTGTTTCAGCT
ACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCATTTCTTTGATAACCCATTGAGG
CAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAGGGTTGTCCCTGAAACA
GAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAACAGAGAGTCTGCT
GCTAGATCAAGAGCTAGAAAGCAGGCTTATATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGTTACGAGTAGATGCAGCT
AATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCAATTGCTCCATTTTGA (SEQ ID NO: 3) Protein >SSP
MWSSSSDNRGLS ASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLH
DHNHQAANFGGMILQDFLARPFANESSPAAAAAAASPVSATTMLNLNSVPELHEFDNPLR
QNSILHQPNASGRKRVVPETEDNSTGDRRNQRMIKNRES AARSRARKQAYMNELESEVAH
LVEENARLKKQQQQLRVDAANQVPKKNTLYRTSTAPF* (SEQ ID NO: 4) >ssp-2129 MWSSSSDNRGLS ASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLH
DHNHQAANFGGMILQDFLARPFANESSPAAAAAAASPVSATTMLNLNSVPELHEFDNPLR
QNSILHQPNASGRKRVVPETEDNSTGDRRNQRMIKNRES AARSRARKQAYMNELESEVAH
LVEENARLKKQQQQLRVDAANQVPKKNTLYRTSTALF* (SEQ ID NO: 5) >ssp-610 MWSSSSDNRGLS ASSSSSSSSSHSPFSPRLKTMEEVWKDINLSSLQDHTTNYSRDHHHLH
DHNHQAANFGGMILQDFLARPFANESSPAAAAAAASPVSATTMLNLNSVPELHEFDNPLR
QNSILHQPNASGRKRVVPETEDNSTGDRRNQRMIKNRES AARSRARKQAYMNELESEVAH
LVEENARLKKQQQQLRVDAANQVPKKNTLYRTSIAPF* (SEQ ID NO: 6) Nucleic acid >SP (wild-type) coding sequence ATGGCTTCCAAAATGTGTGAACCCCTTGTGATTGGTAGAGTGATTGGTGAAGTTGTTGATTATTTCT
GTCCAAGTGTTAAGATGTCTGTTGTTTATAACAACAACAAACATGTCTATAATGGACATGAATTCT
TTCCTTCCTCAGTAACTTCTAAACCTAGGGTTGAAGTTCATGGTGGTGATCTCAGATCCTTCTTCAC
ACTGATCATGATAGATCCAGATGTTCCTGGTCCTAGTGATCCATATCTCAGGGAACATCTACACTG
GATTGTCACAGACATTCCAGGCACTACAGATTGCTCTTTTGGAAGAGAAGTGGTTGGGTATGAAAT
GCCAAGGCCAAATATTGGAATCCACAGGTTTGTATTTTTGCTGTTTAAGCAGAAGAAAAGGCAAA

- 52 -CAATATCGAGTGCACCAGTGTCCAGAGATCAATTTAGTAGTAGAAAATTTTCAGAAGAAAATGAA
CTTGGCTCACCAGTTGCTGCTGTTTTCTTCAATTGTCAGAGGGAAACTGCCGCTAGAAGGCGTTGA
(SEQ ID NO: 7) >sp (mutant) coding sequence ATGGCTTCCAAAATGTGTGAACCCCTTGTGATTGGTAGAGTGATTGGTGAAGTTGTTGATTATTTCT
GTCCAAGTGTTAAGATGTCTGTTGTTTATAACAACAACAAACATGTCTATAATGGACATGAATTCT
TTCCTTCCTCAGTAACTTCTAAACCTAGGGTTGAAGTTCATGGTGGTGATCTCAGATCCTTCTTCAC
ACTGATCATGATAGATCCAGATGTTCTTGGTCCTAGTGATCCATATCTCAGGGAACATCTACACTG
GATTGTCACAGACATTCCAGGCACTACAGATTGCTCTTTTGGAAGAGAAGTGGTTGGGTATGAAAT
GCCAAGGCCAAATATTGGAATCCACAGGTTTGTATTTTTGCTGTTTAAGCAGAAGAAAAGGCAAA
CAATATCGAGTGCACCAGTGTCCAGAGATCAATTTAGTAGTAGAAAATTTTCAGAAGAAAATGAA
CTTGGCTCACCAGTTGCTGCTGTTTTCTTCAATTGTCAGAGGGAAACTGCCGCTAGAAGGCGTTGA
(SEQ ID NO: 8) Protein >SP (wild-type) MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGG
DLRS1-t TLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHR
FVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR* (SEQ ID NO: 9) >sp (mutant) MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGG
DLRSFFTLIMIDPDVLGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHR
FVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR* (SEQ ID NO: 10) Nucleic acid >SFT (wild-type) coding sequence ATGCCTAGAGAACGTGATCCTCTTGTTGTTGGTCGTGTGGTAGGGGATGTATTGGACCCTTTCACA
AGAACTATTGGCCTAAGAGTTATATATAGAGATAGAGAAGTTAATAATGGATGCGAGCTTAGGCC
TTCCCAAGTTATTAACCAGCCAAGGGTTGAAGTTGGAGGAGATGACCTACGTACCTTTTTCACTTT
GGTTATGGTGGACCCTGATGCTCCAAGTCCGAGTGATCCAAATCTGAGAGAATACCTTCACTGGTT
GGTCACCGATATTCCAGCTACCACAGGTTCAAGTTTTGGGCAAGAAATAGTGAGCTATGAAAGTCC
AAGACCATCAATGGGAATACATCGATTTGTATTTGTATTATTCAGACAATTAGGTCGGCAAACAGT
GTATGCTCCAGGATGGCGTCAGAATTTCAACACAAGAGATTTTGCAGAACTTTATAATCTTGGTTT
ACCTGTTGCTGCTGTCTATTTTAATTGTCAAAGAGAGAGTGGCAGTGGTGGACGTAGAAGATCTGC
TGATTGA (SEQ ID NO: 18) >sft (mutant) coding sequence

- 53 -ATGCCTAGAGAACGTGATCCTCTTGTTGTTGGTCGTGTGGTAGGGGATGTATTGGACCCTTTCACA
AGAACTATTGGCCTAAGAGTTATATATAGAGATAGAGAAGTTAATAATGGATGCGAGCTTAGGCC
TTCCCAAGTTATTAACCAGCCAAGGGTTGAAGTTGGAGGAGATGACCTACGTACCTTTTTCACTTT
GGTTATGGTGGACCCTGATGCTCCAAGTCCGAGTGATCCAAATCTGAGAGAATACCTTCACTGGTT
GGTCACCGATATTCCAGCTACCACAGGTTCAAGTTTTGGGCAAGAAATAGTGAGCTATGAAAGTCC
AAGACCATCAATGGGAATACATCGATTTGTATTTGTATTATTCAGACAATTAGGTCGGCAAACAAT
GTATGCTCCAGGATGGCGTCAGAATTTCAACACAAGAGATTTTGCAGAACTTTATAATCTTGGTTT
ACCTGTTGCTGCTGTCTATTTTAATTGTCAAAGAGAGAGTGGCAGTGGTGGACGTAGAAGATCTGC
TGATTGA (SEQ ID NO: 20) Protein >SFT (wild-type) MPRERDPLVVGRVVGDVLDPFTRTIGLRVIYRDREVNNGCELRPSQVINQPRVEVGGDDL
RT1-t TLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGS SFGQEIVSYESPRPSMGIHRFV
FVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVYFNCQRESGSGGRRRSAD* (SEQ ID NO:
19) >sft (mutant) MPRERDPLVVGRVVGDVLDPFTRTIGLRVIYRDREVNNGCELRPSQVINQPRVEVGGDDL
RT1-t TLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGS SFGQEIVSYESPRPSMGIHRFV
FVLFRQLGRQTMYAPGWRQNFNTRDFAELYNLGLPVAAVYFNCQRESGSGGRRRSAD* (SEQ ID NO:
21) Genomic Sequences * Marker : bold with underbar, * Exon: Italics and bold, >SP (wild-type) genomic ATGGCTTCCAAAATGTGTGAACCCCTTGTGATTGGTAGAGTGATTGGTGAAGTTGTTGATTATTTCTG
TCCAAGTGTTAAGATGTCTGTTGTTTATAACAACAACAAACATGTCTATAATGGACATGAATTCTTTC
CTTCCTCAGTAACTTCTAAACCTAGGGTTGAAGTTCATGGTGGTGATCTCAGATCCTTCTTCACACTG
GTATATATTAATCTTCAACACTTCCAATTTACTCCGTCTGTCTGTCCTAATTTATGTCACACATTTTC
TATGATATATAGTTTTAGAAATTATTCAAGACCATAACTTTTTAAAGAAAAAATCATAGACTTTCTT
AGTCAACGTCAAATAAATTGAGACGGACAAGATGACATGATTAGTACATTTATCTTCTATTATTGA
CCTCTCATTTTCTTTTATACATTATTTGACAGATCATGATAGATCCAGATGTTCCTGGTCCTAGTGAT
CCATATCTCAGGGAACATCTACACTGGTATAGACAACATATGCCTTAAAACTAACTCAGTCAATTTT
ATCTTCAATTGTTTACTTTGGAAGGGGAAATGACATGATCATTATATCATAGTACAAATTATTATGT
AATTTCTGTTCGTCTAAAAAATGTCACTTTAGAAAAAACTGATAATCATATACAATACCACAATAA
AGATAGAAGAACATGTACTAATATTGAACTTAAATAATGAGTACTAGGAGTATTATTAATTAACTT
TAAAAATGCTAGTCAATATACCTATGTTTATATGTTAAAAAATCCTTTATATTTGGAAACATGAGT
ACTCCTATACCATACAATGTTGTCGTACAGTTGATTAGACGGGCAAATTAAACAAATGTCCAATAA
TTGTACTAATTAATAACTACTTGTTCTCTTCATCTATTATTAGTTATTACCAAAAAAAGAGGACTGC
AAAATGGTGATATTATTATGTGTAACGGAAAAAAACGTACTCTATTTAATATGATAGAATCAAAGT
GACATATTTTGTTCTAGTTAGACAAATAAGTAACTGAAAAGAGGATTTGACCATCTTTACAGGAT
TGTCA CA GA CA TTCCAGGCACTA CA GATTGCTCTTTTGGTATGTATCCTTAACCCATAAATCAAAAT
AATGTACTTTCTTTTTATTTGCCATTAATATCTCTAGTACAAAAAAGAAATATTATAAAAAAAATTA
ATTTCAATTTTTATATTATAGGTTTAAGATAATAATATTAAACGATATTTTAGTCTCTACCAAATAG

- 54 -ACGAGCAAATTAAAACTAAGAAAGCACTACATGTTTTCTTTATATTATTAGTATAAAAATATATTA
TAATTTGCCTGGTGGTAATAGGATCAAAGTATTGATTCTTAATTATTATTATATAATTAATAATAAT
GGTAAACAAAAAGATATAAAGTGCTTACCTCCTAATTCCCTATATGAAAAAATATACTTACTTAAT
TACTCTTTTTACACGTAAGCATGCATTTAAAAAAATATTAAAAAATTATTCCAGAGGTTATATATA
ATATGTATGGATAAAAAAAAAATTCACCTATATACATAATAATATAATTTTCGAGTGAATTGACCG
CCCTTCAGCATCATTATATAATGTTATCGATCTAGGTCTTTGTGTGAAATTAAAAGTTATTTATACG
GTTAGTACGATCGCGTAATAACGAAGGTAAAAATATTTCAGGAAGAGAAGTGGTTGGGTATGAAAT
GCCAAGGCCAAATATTGGAATCCACAGGTTTGTATTTTTGCTGTTTAAGCAGAAGAAAAGGCAAACA
ATATCGAGTGCACCAGTGTCCAGAGATCAATTTAGTAGTAGAAAATTTTCAGAAGAAAATGAACTTG
GCTCACCAGTTGCTGCTGTTTTCTTCAATTGTCAGAGGGAAACTGCCGCTAGAAGGCGTTGA (SEQ ID
NO: 22) >sp(mutant)genomic(mutation in brackets) ATGGCTTCCAAAATGTGTGAACCCCTTGTGATTGGTAGAGTGATTGGTGAAGTTGTTGATTATTTCTG
TCCAAGTGTTAAGATGTCTGTTGTTTATAACAACAACAAACATGTCTATAATGGACATGAATTCTTTC
CTTCCTCAGTAACTTCTAAACCTAGGGTTGAAGTTCATGGTGGTGATCTCAGATCCTTCTTCACACTG
GTATATATTAATCTTCAACACTTCCAATTTACTCCGTCTGTCTGTCCTAATTTATGTCACACATTTTC
TATGATATATAGTTTTAGAAATTATTCAAGACCATAACTTTTTAAAGAAAAAATCATAGACTTTCTT
AGTCAACGTCAAATAAATTGAGACGGACAAGATGACATGATTAGTACATTTATCTTCTATTATTGA
CCTCTCATTTTCTTTTATACATTATTTGACAGATCATGATAGATCCAGATGTTC[[T][TGGTCCTAGTG
ATCCATATCTCAGGGAACATCTACACTGGTATAGACAACATATGCCTTAAAACTAACTCAGTCAATT
TTATCTTCAATTGTTTACTTTGGAAGGGGAAATGACATGATCATTATATCATAGTACAAATTATTAT
GTAATTTCTGTTCGTCTAAAAAATGTCACTTTAGAAAAAACTGATAATCATATACAATACCACAAT
AAAGATAGAAGAACATGTACTAATATTGAACTTAAATAATGAGTACTAGGAGTATTATTAATTAA
CTTTAAAAATGCTAGTCAATATACCTATGTTTATATGTTAAAAAATCCTTTATATTTGGAAACATGA
GTACTCCTATACCATACAATGTTGTCGTACAGTTGATTAGACGGGCAAATTAAACAAATGTCCAAT
AATTGTACTAATTAATAACTACTTGTTCTCTTCATCTATTATTAGTTATTACCAAAAAAAGAGGACT
GCAAAATGGTGATATTATTATGTGTAACGGAAAAAAACGTACTCTATTTAATATGATAGAATCAAA
GTGACATATTTTGTTCTAGTTAGACAAATAAGTAACTGAAAAGAGGATTTGACCATCTTTACAGG
ATTGTCACAGACATTCCAGGCACTACAGA TTGCTCTTTTGGTATGTATCCTTAACCCATAAATCAAA
ATAATGTACTTTCTTTTTATTTGCCATTAATATCTCTAGTACAAAAAAGAAATATTATAAAAAAAAT
TAATTTCAATTTTTATATTATAGGTTTAAGATAATAATATTAAACGATATTTTAGTCTCTACCAAAT
AGACGAGCAAATTAAAACTAAGAAAGCACTACATGTTTTCTTTATATTATTAGTATAAAAATATAT
TATAATTTGCCTGGTGGTAATAGGATCAAAGTATTGATTCTTAATTATTATTATATAATTAATAATA
ATGGTAAACAAAAAGATATAAAGTGCTTACCTCCTAATTCCCTATATGAAAAAATATACTTACTTA
ATTACTCTTTTTACACGTAAGCATGCATTTAAAAAAATATTAAAAAATTATTCCAGAGGTTATATA
TAATATGTATGGATAAAAAAAAAATTCACCTATATACATAATAATATAATTTTCGAGTGAATTGAC
CGCCCTTCAGCATCATTATATAATGTTATCGATCTAGGTCTTTGTGTGAAATTAAAAGTTATTTATA
CGGTTAGTACGATCGCGTAATAACGAAGGTAAAAATATTTCAGGAAGAGAAGTGGTTGGGTATGAA
ATGCCAAGGCCAAATATTGGAATCCACAGGTTTGTATTTTTGCTGTTTAAGCAGAAGAAAAGGCAAA
CAATATCGAGTGCACCAGTGTCCAGAGATCAATTTAGTAGTAGAAAATTTTCAGAAGAAAATGAACTT
GGCTCACCAGTTGCTGCTGTTTTCTTCAATTGTCAGAGGGAAACTGCCGCTAGAAGGCGTTGA (SEQ
ID NO: 23) * Marker: bold with underbar, * Exon: Italics and bold, >S SP1 (wild-type) genomic ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCA
TTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTC
AAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAAT
TTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGC
AGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCAT
TTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAG
GGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAAC
AGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAGGTAAGTGACACTCAACTTTGTCTTAATCCT

- 55 -GTCAATTTTGTGCTTATACATCAACTATGTTCCATATTGTTACTCTTTTGCTGCTTCTATTCTTGATT
TGAACAATATGCCGAGTTACTCTGTTTGCAGGCTTA TATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGGTTCTCTTATCTTTCTTTATTTCTGT
CACTTTTAAAATTCAGTTTATAAAAAAAATGGATATAACTGATTCATAATAAATTGGTGTTTTCTTA
ATTTGTACAGTTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCA
ACTGCTCCATTTTGAGATCTTATTATAATTTGGTTTCCTAGTGCTACATTAGTATTAAGAACAATTTC
CCATTTGGCTGTATTTTGTTTGTAATATGCACCAACTGTTGTTTTGATGGTGGCCTTGTGGGGCGAT
GAATATTCGTATGACAAAATAAGAAGGGAAAAAATAGGTTGTGAATTAAGGAAAGTGTAGGCCAT
TATTAGTACTCTATCA (SEQ ID NO: 24) >ssp-2129 genomic (mutation in brackets) ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCA
TTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTC
AAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAAT
TTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGC
AGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCAT
TTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAG
GGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAAC
AGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAGGTAAGTGACACTCAACTTTGTCTTAATCCT
GTCAATTTTGTGCTTATACATCAACTATGTTCCATATTGTTACTCTTTTGCTGCTTCTATTCTTGATT
TGAACAATATGCCGAGTTACTCTGTTTGCAGGCTTA TATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGGTTCTCTTATCTTTCTTTATTTCTGT
CACTTTTAAAATTCAGTTTATAAAAAAAATGGATATAACTGATTCATAATAAATTGGTGTTTTCTTA
ATTTGTACAGTTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCA
ACTGCTC[[T][ATTTTGAGATCTTATTATAATTTGGTTTCCTAGTGCTACATTAGTATTAAGAACAATT
TCCCATTTGGCTGTATTTTGTTTGTAATATGCACCAACTGTTGTTTTGATGGTGGCCTTGTGGGGCG
ATGAATATTCGTATGACAAAATAAGAAGGGAAAAAATAGGTTGTGAATTAAGGAAAGTGTAGGCC
ATTATTAGTACTCTATCA (SEQ ID NO: 25) >ssp-610 genomic (mutation in brackets) ATGTGGTCATCAAGCAGTGATAACAGGGGACTCTCTGCTTCTTCTTCTTCATCTTCATCCTCATCTCA
TTCACCATTTTCTCCAAGACTCAAAACAATGGAAGAAGTGTGGAAAGATATTAATCTTTCTTCACTTC
AAGATCACACTACGAATTACTCTAGAGATCATCATCATCTTCATGATCATAATCATCAAGCTGCTAAT
TTTGGTGGAATGATTTTACAAGATTTTTTGGCAAGGCCTTTTGCTAATGAATCTTCACCAGCAGCAGC
AGCAGCAGCAGCCTCCCCTGTTTCAGCTACAACTATGCTGAATTTGAACTCTGTTCCTGAGCTTCAT
TTCTTTGATAACCCATTGAGGCAAAACTCAATCTTGCACCAACCAAATGCAAGTGGAAGAAAAAG
GGTTGTCCCTGAAACAGAAGACAATTCTACAGGGGATAGAAGAAATCAGAGGATGATCAAGAAC
AGAGAGTCTGCTGCTAGATCAAGAGCTAGAAAGCAGGTAAGTGACACTCAACTTTGTCTTAATCCT
GTCAATTTTGTGCTTATACATCAACTATGTTCCATATTGTTACTCTTTTGCTGCTTCTATTCTTGATT
TGAACAATATGCCGAGTTACTCTGTTTGCAGGCTTA TATGAACGAGTTGGAATCAGAAGTGGCACAT
TTAGTTGAAGAAAATGCAAGGCTCAAGAAGCAGCAGCAACAGGTTCTCTTATCTTTCTTTATTTCTGT
CACTTTTAAAATTCAGTTTATAAAAAAAATGGATATAACTGATTCATAATAAATTGGTGTTTTCTTA
ATTTGTACAGTTACGAGTAGATGCAGCTAATCAAGTTCCCAAAAAGAACACTCTTTATCGGACGTCA
A[[T][TGCTCCATTTTGAGATCTT ATT AT AATTTGGTTTCCT AGTGCT ACATT AGT ATT AAGAACAATT
TCCCATTTGGCTGTATTTTGTTTGTAATATGCACCAACTGTTGTTTTGATGGTGGCCTTGTGGGGCG
ATGAATATTCGTATGACAAAATAAGAAGGGAAAAAATAGGTTGTGAATTAAGGAAAGTGTAGGCC
ATTATTAGTACTCTATCA (SEQ ID NO: 26) * Marker : bold with underbar, * Exon: Italics and bold, * Deletion : :
>SFT (wild-type) genomic ATGCCTAGAGAACGTGATCCTCTTGTTGTTGGTCGTGTGGTAGGGGATGTATTGGACCCTTTCACAA
GAACTA TTGGCCTAA GAGTTA TA TA TA GA GA TA GA GAAGTTAA TAA TGGA TG
CGAGCTTAGGCCTTC
CCAAGTTATTAACCAGCCAAGGGTTGAAGTTGGAGGAGATGACCTACGTACCTTTTTCACTTTGGT A
ATATTTCTTATATTTTTTGTTTGGGAATATAGTTAAGTTGATTTTCATAAGCAAAGTAAAAAGTATT

- 56 -TTTGTCTTTTTGTAAAGGTTATGGTGGACCCTGATGCTCCAAGTCCGAGTGATCCAAATCTGAGAGA
ATACCTTCACTGGTCCGTATTTTTTCCTTATTCTCTCTTCTTTTCATCTCTTTCTTTTTTGACCTTTTTA
CTTAATTATATTCTTTAGTAATAATATATGATGATATCCTTTTTAAAAATTGGAAATACGAAAAGG
AGAAATGAAGAGGAGATTTACATGTGAGGGAGCAGATGGTAGAAATATATAAATGTGAAGATAT
ATATTCTTGAACTTAAAAACAAGCTACTAAAATAAAAATGAATAAAATATTTACTCTGTCAATATT
CTGTACTATATTGGTCAATGAATATTTATATTATTCATGACTTTAAAAATAGTCAAACGAGACATA
ACGTAAAAGTCAAAATACGTTTAAGCTCATTCATATAAATGAATATTTTTAAAATTTGTTGCATCC
ATCAAAATATCTACTTTTTAAGGAATGATATTTATTTCATAATATTCATATTTGATTCGTTGATGGA
TAGATTTTATTCTTTAAAAAATTAAATAAAAAAAATAAAATTGGCCTAGTCATATCCATCTAAAAT
GGGTGAGATTCTGGTACGCTGACCGTCTTATAATTCCCAATAAAAACTTTTGGAGAAAAAAGGGA
ACACAAAAAAATGAAGTAGTGCACCAATAGAATCACTTCTCACCTCCTTATAGCTAGTACGGATTA
TTCCCTTCATGTGTGCCACAGTCATGCACAATCCATATTATAATTTCCAAAATAATTAGTTGTTCAC
GTTTGAATTGATCATAAATGATATTACCATTTATCCTTTTTACTTATTAAGTAGATAGATTAAAAAA
TTTAAGATTTTCAAAAAGTTCTACATTTTTAAAAATAATCAATTGAAGGTATAAAAAAGTTGTCCT
TCCTTAATTTCTCAAGATGGATAAGTAATTAAGAACAACTAAAAAAAAGCGAACAAATAATTAGA
GATCGAATGAATATTTATCAATCCTCATTTCACCAAGTCATTAAATTATTTTATGACCAAAATGTTT
ACTCATTTTGCTTAAATATCAAGAAAATTGTTGAATTATTTCTTATAGAAATATCACTCAACATCAG
TATCTAAGTAGTACTCATTTCGTTTCTATTTATATATCATTTTTATTAAATATAAATGTTTTCTTGAT
ATTTATTTATTTCACAAAATCAAAATTTGACTTATGATTACTAAATAATTAATTTAATTTAATTAAT
CAAAATAAATTAATTTATCTCTTTTGCAAAAGTTAACTTTAAGAGAACACTAATTAAGAATATAAT
AATAAATTTAGTTAATTTTTTTAAAAGATATAAAATCTAAATTAGTGACATATAAATAGAAAGAGG
GGAAAGTAGTAGTTTAACTCTTATGGTTTGATAAGGTGTGTGCTAAATGACAACATCTTTCTTGTCT
CGTAAAGTTAACATCTTTGTAGGTGGTGAGTAAGTGAGTGAATGCCATTGAATGAAGAGATTATTT
GTTTTTGTCACCTTTACCACTAAAGTTTTGTCTATTTTTATTCTTCGAATTCCTCCAGTACAAGATTT
TATTTTTGATATTCCTTTCTTTGGAATTCAGTGTTGGTATAAATAGGATCTATTTGGCTATCCACAT
ATATTTTTAAATAAAAATCAGTATTTAGTCATTTAAATTACATTTCATGGATTATACTCGTTAAAAA
AAATATATTTAAGCAATTAAATATTATTTGTTGAACATAGGAAAAATGATTTGAAATATATTCAAA
CTTTGATCACAATTGTGATAACAATTTCAAATTTTGGGAAGGACCTTTTACCCCTTGCACTATTTAT
AGTATATTTTAAATGTATATATATGTCAACATAAATATAATAAATATTGCATTATTATATATAGTAA
CTTGTTCACGTGGATACATATATACCTGTAAAATATACTATTAAATAATATAGGAGATAGTAGGTC
CTGCTCAAAGTTAGAGATTGTTATAGCAATTTCGATCAAAGATATATTTCAAACTATTTTTCCTAAA
AGATATAACCAAATACAATTTTATCTTTAATTTCAATATTTGCAAATAAAGTGAAAAAATATTTAT
ACCAAGTAGGATGAATTAAAAATTAAGGGTTTTTTTCCTCTTGTTATATATATAACTAATCGTCATT
TTTTTATTAATGAATCGTCGACAGGTTGGTCACCGATATTCCAGCTACCACAGGTTCAAGTTTTGGT
GAGAATCCTCTTTTTGTTAATTGTTTGTTTGTTGTCTTCCCATGTTTACATTTTTTTAAAAAAAAACA
AACTAATTTTAAAGGTAGAATTAAAAAAAAATCATTATCGTATTTAAAAATATATTTTTATAATAA
TATGGACGAATAATATGAAACTAACAGAGTAATGACAAAGGAATTTATACTGAGCGGGCAATGTT
GCGTTAAATCATGTTTGTCCTAAACTTTTAAAACCTAGGAAAGGGAATGAAATCTATTCTCAATTA
ACGTGATTAAATATTCTAAACAATTGATATCCTTTAATTATGTCCCACACTACGCCAAAAGTTCTTA
AGCATTACACTCTAAAATTTGTATGCATAACATTAAAAGATCATTACCTATTTGGCTAAAATTTTTA
CAATAAGTTTATTTTAAAAAGTGTTCCTTTTTTTCCCCTCTCAAAAACACACTTGTGTTACTCTTGAT
TTTTCTCTCAAAAGTTTAGTTAAATACTTAAGTTTTTTTAAAATAATTTTTTTATGAAAAAAGAAAA
AAAACATTTTTGGCTAACCAAACAGGTTTAGGAGACTTGCGCTCTGCCATAAGTATTTCCCCATTC
ACTTTTCTTCCATTTTTATTTATGATTTTTTTTAACATATTAAGAAAGCTATTTGTTTCATGCTCTTC
AATAATTTCTTATTCTCCAAATTAACATAGATATTGTGGTAAAACACCATAATAGTTATTGTATATT
TGTATACCTTTTCAAATATATATACTCTCTAATAAGATCACAAGATAAAAAAACATTTATTGGTGA
ATAAATTTGACATAACTTTAATTTAATTATAACACAAAATTCAAAAGTTTTATTTCTCAACTTAAAA
ATTTGGTGTCAAGTCAGAAGTAGATGTGATAATTTTTGTTTTTGAAATTGGAGGGAGTATCTTGT
TGAAAATATTGGATATGTACATAAGAAGTAGTCATTTGAAATGCATTGAAACTTGATAAAAACAT
AAGTAGCTAGCTAGTGCATGAAAGTTTGGTTGTTTATGTACTTTTAATATGTAGGGCAAGAAA TAGT
GAGCTATGAAAGTCCAAGACCATCAATGGGAATACATCGATTTGTATTTGTATTATTCAGACAATTAG
GTCGGCAAACAGTGTATGCTCCAGGATGGCGTCAGAATTTCAACACAAGAGATTTTGCAGAACTTTA
TAATCTTGGTTTACCTGTTGCTGCTGTCTATTTTAATTGTCAAAGAGAGAGTGGCAGTGGTGGACGTA
GAAGATCTGCTGATTGATCAACTCCATCTACTACAAAAAACAAAAAAACAATGATATTTTTAGCTA
ATAATAACCACCAATATCTACTACTTCTCTTACAACTTTAGTAGTATCTATAGTTATCTTTTTTAATC
TACTCTTTTACTTCTTTACTATATTGTCTTCCTCTCAATTTATTTGAATTAGTGACTTGATATCAAGT

- 57 -TTCAATAAAGAAACAAAGACTGACTTTAGAATTTTGTGATTTACAATAAGTTGTACATATTTGTAT
GACTATCTTAAAAAGTTAAATCATTATTATTAAATATAAAAATATGATTAATTTAAAAGGAAGTAA
ATTATATAAAACGTTAATTTTTTTTTATAGTTTAGCTCTTAAAAAAAAATTATAACAATTAAAAGTA
TTGAATGAAAGAAGTTTGTAACTAGTCTCTGTTATTCCTCTATAAAACAGTATATTTTCTTGTTACT
TTTATAAATTTCTAAGATATGAACTTGAGT (SEQ ID NO: 16) >sft-1906 genomic(mutation in brackets) ATGCCTAGAGAACGTGATCCTCTTGTTGTTGGTCGTGTGGTAGGGGATGTATTGGACCCTTTCACA
AGAACTATTGGCCTAAGAGTTATATATAGAGATAGAGAAGTTAATAATGGATGCGAGCTTAGGCC
TTCCCAAGTTATTAACCAGCCAAGGGTTGAAGTTGGAGGAGATGACCTACGTACCTTTTTCACTTT
GGTAATATTTCTTATATTTTTTGTTTGGGAATATAGTTAAGTTGATTTTCATAAGCAAAGTAAAAAG
TATTTTTGTCTTTTTGTAAAGGTTATGGTGGACCCTGATGCTCCAAGTCCGAGTGATCCAAATCTGA
GAGAATACCTTCACTGGTCCGTATTTTTTCCTTATTCTCTCTTCTTTTCATCTCTTTCTTTTTTGACCT
TTTTACTTAATTATATTCTTTAGTAATAATATATGATGATATCCTTTTTAAAAATTGGAAATACGAA
AAGGAGAAATGAAGAGGAGATTTACATGTGAGGGAGCAGATGGTAGAAATATATAAATGTGAAG
ATATATATTCTTGAACTTAAAAACAAGCTACTAAAATAAAAATGAATAAAATATTTACTCTGTCAA
TATTCTGTACTATATTGGTCAATGAATATTTATATTATTCATGACTTTAAAAATAGTCAAACGAGAC
ATAACGTAAAAGTCAAAATACGTTTAAGCTCATTCATATAAATGAATATTTTTAAAATTTGTTGCA
TCCATCAAAATATCTACTTTTTAAGGAATGATATTTATTTCATAATATTCATATTTGATTCGTTGAT
GGATAGATTTTATTCTTTAAAAAATTAAATAAAAAAAATAAAATTGGCCTAGTCATATCCATCTAA
AATGGGTGAGATTCTGGTACGCTGACCGTCTTATAATTCCCAATAAAAACTTTTGGAGAAAAAAGG
GAACACAAAAAAATGAAGTAGTGCACCAATAGAATCACTTCTCACCTCCTTATAGCTAGTACGGA
TTATTCCCTTCATGTGTGCCACAGTCATGCACAATCCATATTATAATTTCCAAAATAATTAGTTGTT
CACGTTTGAATTGATCATAAATGATATTACCATTTATCCTTTTTACTTATTAAGTAGATAGATTAAA
AAATTTAAGATTTTCAAAAAGTTCTACATTTTTAAAAATAATCAATTGAAGGTATAAAAAAGTTGT
CCTTCCTTAATTTCTCAAGATGGATAAGTAATTAAGAACAACTAAAAAAAAGCGAACAAATAATT
AGAGATCGAATGAATATTTATCAATCCTCATTTCACCAAGTCATTAAATTATTTTATGACCAAAAT
GTTTACTCATTTTGCTTAAATATCAAGAAAATTGTTGAATTATTTCTTATAGAAATATCACTCAACA
TCAGTATCTAAGTAGTACTCATTTCGTTTCTATTTATATATCATTTTTATTAAATATAAATGTTTTCT
TGATATTTATTTATTTCACAAAATCAAAATTTGACTTATGATTACTAAATAATTAATTTAATTTAAT
TAATCAAAATAAATTAATTTATCTCTTTTGCAAAAGTTAACTTTAAGAGAACACTAATTAAGAATA
TAATAATAAATTTAGTTAATTTTTTTAAAAGATATAAAATCTAAATTAGTGACATATAAATAGAAA
GAGGGGAAAGTAGTAGTTTAACTCTTATGGTTTGATAAGGTGTGTGCTAAATGACAACATCTTTCT
TGTCTCGTAAAGTTAACATCTTTGTAGGTGGTGAGTAAGTGAGTGAATGCCATTGAATGAAGAGAT
TATTTGTTTTTGTCACCTTTACCACTAAAGTTTTGTCTATTTTTATTCTTCGAATTCCTCCAGTACAA
GATTTTATTTTTGATATTCCTTTCTTTGGAATTCAGTGTTGGTATAAATAGGATCTATTTGGCTATCC
ACATATATTTTTAAATAAAAATCAGTATTTAGTCATTTAAATTACATTTCATGGATTATACTCGTTA
AAAAAAATATATTTAAGCAATTAAATATTATTTGTTGAACATAGGAAAAATGATTTGAAATATATT
CAAACTTTGATCACAATTGTGATAACAATTTCAAATTTTGGGAAGGACCTTTTACCCCTTGCACTAT
TTATAGTATATTTTAAATGTATATATATGTCAACATAAATATAATAAATATTGCATTATTATATATA
GTAACTTGTTCACGTGGATACATATATACCTGTAAAATATACTATTAAATAATATAGGAGATAGTA
GGTCCTGCTCAAAGTTAGAGATTGTTATAGCAATTTCGATCAAAGATATATTTCAAACTATTTTTCC
TAAAAGATATAACCAAATACAATTTTATCTTTAATTTCAATATTTGCAAATAAAGTGAAAAAATAT
TTATACCAAGTAGGATGAATTAAAAATTAAGGGTTTTTTTCCTCTTGTTATATATATAACTAATCGT
CATTTTTTTATTAATGAATCGTCGACAGGTTGGTCACCGATATTCCAGCTACCACAGGTTCAAGTTT
TGGTGAGAATCCTCTTTTTGTTAATTGTTTGTTTGTTGTCTTCCCATGTTTACATTTTTTTAAAAAAA
AACAAACTAATTTTAAAGGTAGAATTAAAAAAAAATCATTATCGTATTTAAAAATATATTTTTATA
ATAATATGGACGAATAATATGAAACTAACAGAGTAATGACAAAGGAATTTATACTGAGCGGGCAA
TGTTGCGTTAAATCATGTTTGTCCTAAACTTTTAAAACCTAGGAAAGGGAATGAAATCTATTCTCA
ATTAACGTGATTAAATATTCTAAACAATTGATATCCTTTAATTATGTCCCACACTACGCCAAAAGTT
CTTAAGCATTACACTCTAAAATTTGTATGCATAACATTAAAAGATCATTACCTATTTGGCTAAAATT
TTTACAATAAGTTTATTTTAAAAAGTGTTCCTTTTTTTCCCCTCTCAAAAACACACTTGTGTTACTCT
TGATTTTTCTCTCAAAAGTTTAGTTAAATACTTAAGTTTTTTTAAAATAATTTTTTTATGAAAAAAG
AAAAAAAACATTTTTGGCTAACCAAACAGGTTTAGGAGACTTGCGCTCTGCCATAAGTATTTCCCC
ATTCACTTTTCTTCCATTTTTATTTATGATTTTTTTTAACATATTAAGAAAGCTATTTGTTTCATGCT
CTTCAATAATTTCTTATTCTCCAAATTAACATAGATATTGTGGTAAAACACCATAATAGTTATTGTA

- 58 -TATTTGTATACCTTTTCAAATATATATACTCTCTAATAAGATCACAAGATAAAAAAACATTTATTGG
TGAATAAATTTGACATAACTTTAATTTAATTATAACACAAAATTCAAAAGTTTTATTTCTCAACTTA
AAAATTTGGTGTCAAGTCAGAAGTAGATGTGATAATTTTTGTTTTTGAAATTGGAGGGAGTATCT
TGTTGAAAATATTGGATATGTACATAAGAAGTAGTCATTTGAAATGCATTGAAACTTGATAAAAAC
ATAAGTAGCTAGCTAGTGCATGAAAGTTTGGTTGTTTATGTACTTTTAATATGTAGGGCAAGAAAT
AGTGAGCTATGAAAGTCCAAGACCATCAATGGGAATACATCGATTTGTATTTGTATTATTCAGACA
ATTAGGTCGGCAAACA[[A]]TGTATGCTCCAGGATGGCGTCAGAATTTCAACACAAGAGATTTTGCA
GAACTTTATAATCTTGGTTTACCTGTTGCTGCTGTCTATTTTAATTGTCAAAGAGAGAGTGGCAGTG
GTGGACGTAGAAGATCTGCTGATTGATCAACTCCATCTACTACAAAAAACAAAAAAACAATGATA
TTTTTAGCTAATAATAACCACCAATATCTACTACTTCTCTTACAACTTTAGTAGTATCTATAGTTAT
CTTTTTTAATCTACTCTTTTACTTCTTTACTATATTGTCTTCCTCTCAATTTATTTGAATTAGTGACTT
GATATCAAGTTTCAATAAAGAAACAAAGACTGACTTTAGAATTTTGTGATTTACAATAAGTTGTAC
ATATTTGTATGACTATCTTAAAAAGTTAAATCATTATTATTAAATATAAAAATATGATTAATTTAAA
AGGAAGTAAATTATATAAAACGTTAATTTTTTTTTATAGTTTAGCTCTTAAAAAAAAATTATAACA
ATTAAAAGTATTGAATGAAAGAAGTTTGTAACTAGTCTCTGTTATTCCTCTATAAAACAGTATATTT
TCTTGTTACTTTTATAAATTTCTAAGATATGAACTTGAGT (SEQ ID NO: 17) Without further elaboration, it is believed that one skilled in the art can, based on the above description, utilize the present disclosure to its fullest extent. The specific embodiments are, therefore, to be construed as merely illustrative, and not limitative of the remainder of the disclosure in any way whatsoever. All publications cited herein are incorporated by reference for the purposes or subject matter referenced herein.
From the above description, one skilled in the art can easily ascertain the essential characteristics of the present disclosure, and without departing from the spirit and scope thereof, can make various changes and modifications of the disclosure to adapt it to various usages and conditions. Thus, other embodiments are also within the claims.

- 59 -

Claims

Claims What is claimed is:

1. A genetically-altered Solanaceae plant comprising a mutant suppressor of sp1 (ssp1) gene and a mutant self pruning (sp) gene.

2. The genetically-altered Solanaceae plant of claim 2, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

3. The genetically-altered Solanaceae plant of claim 3, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

4. The genetically-altered Solanaceae plant of any one of claims 1 to 3, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID
NO: 5 or SEQ ID NO: 6.

5. The genetically-altered Solanaceae plant of any one of claims 1 to 4, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1.

6. The genetically-altered Solanaceae plant of any one of claims 1 to 5, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3.

7. The genetically-altered Solanaceae plant of any one of claims 1 to 6, wherein the mutant sp gene encodes a mutant sp polypeptide comprising the sequence of SEQ
ID NO: 10.

8. The genetically-altered Solanaceae plant of any one of claims 1 to 7, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 8.

9. The genetically-altered Solanaceae plant of any one of claims 1-8, wherein the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant.

10. The genetically-altered Solanaceae plant of any one of claims 1-9, wherein the genetically-altered Solanaceae plant is isogenic.

11. The genetically-altered Solanaceae plant of any one of claims 1-10, wherein the genetically-altered Solanaceae plant is inbred.

12. The genetically-altered Solanaceae plant of any one of claims 1-11, wherein the genetically-altered Solanaceae plant is homozygous for the mutant ssp1 gene and homozygous for the mutant sp gene.

13. The genetically-altered Solanaceae plant of any one of claims 1-12, wherein the genetically-altered Solanaceae plant is semi-determinate.

14. A seed for producing a genetically-altered Solanaceae plant of any one of claims 1 to 13.

15. A method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant ssp1 gene into a Solanaceae plant containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant containing a mutant ssp1 gene and a mutant sp gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant ssp1 gene and heterozygous or homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant.

16. A method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant ssp1 gene into a Solanaceae plant part containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant ssp1 gene and the mutant sp gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant ssp1 and a mutant sp gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sp gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant heterozygous or homozygous for the mutant ssp1 gene and heterozygous or homozygous for the mutant sp gene, thereby producing a genetically-altered Solanaceae plant.

17. The method of 15 or 16, wherein the genetically-altered Solanaceae plant is homozygous for the mutant ssp1 gene and homozygous for the mutant sp gene.

18. The method of any one of claims 15 to 17, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

19. The method of claim 18, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

20. The method of any one of claims 15 to 19, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO:
6.

21. The method of any one of claims 15 to 20, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1.

22. The method of any one of claims 15 to 21, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO:
3.

23. The method of any one of claims 15 to 22, wherein the mutant sp gene encodes a mutant sp polypeptide comprising the sequence of SEQ ID NO: 10.

24. The method of any one of claims 15 to 23, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8.

25. The method of any one of claims 15 to 24, wherein in (a), the mutant ssp1 gene is introduced into a plant or a plant part by a method selected from the group consisting of:
Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation.

26. The method of claim 25, wherein in (a), the mutant ssp1 gene is introduced into a plant or a plant part by nuclease mediated recombination.

27. The method of any one of claims 15 to 26, wherein the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant.

28. The method of any one of claims 15 to 27, wherein the genetically-altered Solanaceae plant is inbred.

29. The method of any one of claims 15 to 28, wherein the genetically-altered Solanaceae plant is semi-determinate.

30. A genetically-altered Solanaceae plant produced by the method of any one of claims 15 to 29.

31. A genetically-altered Solanaceae plant comprising a mutant suppressor of sp1 (ssp1) gene and a mutant single flower truss (sft) gene.

32. A genetically-altered Solanaceae plant comprising a mutant suppressor of sp1 (ssp1) gene and a mutant single flower truss (sft) gene, wherein the mutant genes are heterozygous.

33. The genetically-altered Solanaceae plant of claim 31 or 32, wherein the sft gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 20.

34. The genetically-altered Solanaceae plant of claim 31 or 32, wherein the sft gene comprises SEQ ID NO: 20.

35. The genetically-altered Solanaceae plant of any one of claims 31 to 34, wherein the mutant ssp1 gene comprises a coding sequence having a nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3 or encodes a mutant ssp1 protein that comprises SEQ ID
NO: 5 or SEQ ID NO: 6.

36. The genetically-altered Solanaceae plant of any one of claims 31 to 34, wherein the mutant ssp1 gene comprises a nucleic acid sequence that comprises SEQ ID NO: 2 or SEQ
ID NO: 3 or encodes a mutant ssp1 protein that comprises SEQ ID NO: 5 or SEQ
ID NO: 6.

37. The genetically-altered Solanaceae plant of any one of claims any one of claims 31 to 34, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

38. The genetically-altered Solanaceae plant of any one of claims 31 to 37, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T

mutation at position 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1.

39. The genetically-altered Solanaceae plant of any one of claims 31 to 38, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3.

40. The genetically-altered Solanaceae plant of any one of claims 31 to 38, wherein the mutant ssp1 gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID
NO: 3.

41. The genetically-altered Solanaceae plant of any one of claims 31 to 40, wherein the genetically-altered Solanaceae plant is semi-determinate.

42. The genetically-altered semi-determinate Solanaceae plant of claim 41, wherein the plant is a tomato (Solanum lycopersicum) plant.

43. The genetically-altered semi-determinate Solanaceae plant of claim 41 or 42, wherein the genetically-altered semi-determinate Solanaceae plant is inbred.

44. The genetically-altered semi-determinant Solanaceae plant of claim any one of claims 41 to 43, wherein the mutant sft gene is sft-1906.

45. A seed for producing a genetically-altered Solanaceae plant of any one of claims 31 to 44.

46. A genetically-altered Solanaceae plant comprising a mutant self-pruning (sp) gene that comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 8. and a mutant single flower truss (sft) gene that comprises SEQ ID NO: 20.

47. The genetically-altered Solanaceae plant of claim 46, wherein the mutant self-pruning (sp) gene is heterozygous and the mutant single flower truss (sft) gene is heterozygous.

48. A genetically-altered Solanaceae plant comprising a mutant self-pruning (sp) gene that comprises the nucleic acid sequence of SEQ ID NO: 8. and a mutant single flower truss (sft) gene that comprises SEQ ID NO: 20, wherein the mutant genes are heterozygous.

49. A method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant sft gene into a Solanaceae plant containing a mutant ssp1 gene, thereby producing a genetically-altered Solanaceae plant containing a mutant ssp1 gene and a mutant sft gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant ssp1 gene and the mutant sft gene, thereby producing a genetically-altered Solanaceae plant.

50. A method of producing a genetically-altered Solanaceae plant comprising:
(a) introducing a mutant sft gene into a Solanaceae plant part containing a mutant ssp1 gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant ssp1 gene and the mutant sft gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant ssp1 and a mutant sft gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sft gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sft gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant ssp1 gene and the mutant sft gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate.

51. A genetically-altered Solanaceae plant produced by the method of claim 49 or 50.

52. A genetically-altered Solanaceae plant heterozygous for a mutant suppressor of sp1 (ssp1) gene and homozygous for a mutant single flower truss (sft) gene, wherein the genetically-altered Solanaceae plant has an altered yield compared to the yield of a wild-type Solanaceae plant.

53. A seed for producing a genetically-altered Solanaceae plant of claim 51 or 52.

54. A genetically-altered semi-determinate Solanaceae plant homozygous for a mutant suppressor of sp1 (ssp1) gene and homozygous for a mutant self pruning (sp) gene.

55. The genetically-altered semi-determinate Solanaceae plant of claim 54, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

56. The genetically-altered semi-determinate Solanaceae plant of claim 55, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15

57. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 56, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO: 6.

58. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 57, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID
NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1.

59. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 58, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3.

60. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 59, wherein the mutant ssp1 gene comprises the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3.

61. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 60, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8.

62. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 61, wherein the mutant sp gene comprises the nucleic acid sequence of SEQ ID
NO: 8.

63. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54-62, wherein the genetically-altered semi-determinate Solanaceae plant is a tomato (Solanum lycopersicum) plant.

64. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54-63, wherein the genetically-altered semi-determinate Solanaceae plant is isogenic.

65. The genetically-altered semi-determinate Solanaceae plant of any one of claims 54-64, wherein the genetically-altered semi-determinate Solanaceae plant is inbred.

66. A seed for producing a genetically-altered semi-determinate Solanaceae plant of any one of claims 54 to 65.

67. A method of producing a genetically-altered semi-determinate Solanaceae plant comprising:
(a) introducing a mutant ssp1 gene into a Solanaceae plant containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant containing a mutant ssp1 gene and a mutant sp gene; and (b) self-crossing the genetically-altered Solanaceae plant produced in (a) or crossing two genetically-altered Solanaceae plants produced in (a) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant ssp1 gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate.

68. A method of producing a genetically-altered semi-determinate Solanaceae plant comprising:
(a) introducing a mutant ssp1 gene into a Solanaceae plant part containing a mutant sp gene, thereby producing a genetically-altered Solanaceae plant part containing the mutant ssp1 gene and the mutant sp gene;
(b) maintaining the genetically-altered Solanaceae plant part containing a mutant ssp1 and a mutant sp gene produced in (a) under conditions and for sufficient time for production of a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sp gene from the plant part, thereby producing a genetically-altered Solanaceae plant containing the mutant ssp1 gene and the mutant sp gene;
(c) self-crossing the genetically-altered Solanaceae plant produced in (b) or crossing two genetically-altered Solanaceae plants produced in (b) under conditions appropriate for producing a genetically-altered Solanaceae plant homozygous for the mutant ssp1 gene and the mutant sp gene, thereby producing a genetically-altered Solanaceae plant that is semi-determinate.

69. The method of claim 67 or 68, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

70. The method of claim 69, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

71. The method of any one of claims 67 to 70, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID NO: 5 or SEQ ID NO:
6.

72. The method of any one of claims 67 to 71, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID NO: 1.

73. The method of any one of claims 67 to 72, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO:
3.

74. The method of any one of claims 67 to 73, wherein the mutant ssp1 gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID NO: 3.

75. The method of any one of claims 67 to 74, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID NO: 8.

76. The method of any one of claims 67 to 75, wherein the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8.

77. The method of any one of claims 67 to 76, wherein in (a), the mutant ssp1 gene is introduced into a plant or a plant part by a method selected from the group consisting of:
Agrobacterium-mediated recombination, viral-vector mediated recombination, microinjection, gene gun bombardment/biolistic particle delivery, nuclease mediated recombination, and electroporation.

78. The method of any one of claims 67 to 77, wherein the Solanaceae plant is a tomato (Solanum lycopersicum) plant.

79. The method of any one of claims 67 to 78, wherein the Solanaceae plant is inbred.

80. An isolated polynucleotide encoding a mutant ssp1 protein having the amino acid sequence of SEQ ID NO: 5 or SEQ ID NO: 6.

81. An isolated polynucleotide comprising the nucleic acid sequence of SEQ
ID NO: 2 or SEQ ID NO: 3.

82. A genetically-altered semi-determinate Solanaceae plant produced by the method of any one of claims 67 to 79.

83. A genetically-altered Solanaceae plant heterozygous for a mutant suppressor of sp1 (ssp1) gene and homozygous for a mutant self pruning (sp) gene, wherein the genetically-altered Solanaceae plant has an altered flowering time and shoot architecture compared to a wild-type Solanaceae plant.

84. The genetically-altered Solanaceae plant of claim 83, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

85. The genetically-altered Solanaceae plant of claim 84, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

86. The genetically-altered Solanaceae plant of any one of claims 83 to 85, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID
NO: 5 or SEQ ID NO: 6.

87. The genetically-altered Solanaceae plant of any one of claims 83 to 86, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1.

88. The genetically-altered Solanaceae plant of any one of claims 83 to 87, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3.

89. The genetically-altered Solanaceae plant of any one of claims 83 to 88, wherein the mutant ssp1 gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID
NO: 3.

90. The genetically-altered Solanaceae plant of any one of claims 83 to 89, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 8.

91. The genetically-altered Solanaceae plant of any one of claims 83 to 89, wherein the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8.

92. The genetically-altered Solanaceae plant of any one of claims 83 to 91, wherein the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant.

93. The genetically-altered Solanaceae plant of any one of claims 83 to 92, wherein the genetically-altered Solanaceae plant is isogenic.

94. The genetically-altered Solanaceae plant of any one of claims 83 to 93, wherein the genetically-altered Solanaceae plant is inbred.

95. The genetically-altered Solanaceae plant of any one of claims 83 to 94, wherein the genetically-altered Solanaceae plant is semi-determinate.

96. A seed for producing a genetically-altered Solanaceae plant of any one of claims 83 to 95.

97. A genetically-altered Solanaceae plant homozygous for a mutant suppressor of sp1 (ssp1) gene, wherein the genetically-altered Solanaceae plant has an altered flowering time compared to a wild-type Solanaceae plant.

98. The genetically-altered Solanaceae plant of claim 97, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif.

99. The genetically-altered Solanaceae plant of claim 98, wherein the mutant ssp1 gene comprises a nucleic acid sequence that encodes a mutant ssp1 protein that comprises a mutant SAP motif with a sequence of SEQ ID NO: 14 or SEQ ID NO: 15.

100. The genetically-altered Solanaceae plant of any one of claims 97 to 99, wherein the mutant ssp1 gene encodes a mutant ssp1 polypeptide comprising the sequence of SEQ ID
NO: 5 or SEQ ID NO: 6.

101. The genetically-altered Solanaceae plant of any one of claims 97 to 100, wherein the mutant ssp1 gene comprises a C to T mutation at position 641 of SEQ ID NO: 1, a C to T
mutation at 647 of SEQ ID NO: 1, or a C to T mutation at position 641 and 647 of SEQ ID
NO: 1.

102. The genetically-altered Solanaceae plant of any one of claims 97 to 101, wherein the mutant ssp1 gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 2 or SEQ ID NO: 3.

103. The genetically-altered Solanaceae plant of any one of claims 97 to 101, wherein the mutant ssp1 gene comprises the nucleic acid sequence of SEQ ID NO: 2 or SEQ ID
NO: 3.

104. The genetically-altered Solanaceae plant of any one of claims 97 to 103, wherein the mutant sp gene comprises a coding sequence having the nucleic acid sequence of SEQ ID
NO: 8.

105. The genetically-altered Solanaceae plant of any one of claims 97 to 103, wherein the mutant sp gene comprises the nucleic acid sequence of SEQ ID NO: 8.

106. The genetically-altered Solanaceae plant of any one of claims 97 to 104, wherein the genetically-altered Solanaceae plant is a tomato (Solanum lycopersicum) plant.

107. The genetically-altered Solanaceae plant of any one of claims 97 to 105, wherein the genetically-altered Solanaceae plant is isogenic.

108. The genetically-altered Solanaceae plant of any one of claims 97 to 106, wherein the genetically-altered Solanaceae plant is inbred.

109. The genetically-altered Solanaceae plant of any one of claims 97 to 108, wherein the genetically-altered Solanaceae plant is homozygous for a wild-type SELF
PRUNING (SP) gene.

110. A seed for producing a genetically-altered Solanaceae plant of any one of claims 97 to 109.