CA2502479A1 - Laminin receptor binding molecule - Google Patents
Laminin receptor binding molecule Download PDFInfo
- Publication number
- CA2502479A1 CA2502479A1 CA002502479A CA2502479A CA2502479A1 CA 2502479 A1 CA2502479 A1 CA 2502479A1 CA 002502479 A CA002502479 A CA 002502479A CA 2502479 A CA2502479 A CA 2502479A CA 2502479 A1 CA2502479 A1 CA 2502479A1
- Authority
- CA
- Canada
- Prior art keywords
- cys
- thr
- seq
- glu
- lys
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
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- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/566—Immunoassay; Biospecific binding assay; Materials therefor using specific carrier or receptor proteins as ligand binding reagents where possible specific carrier or receptor proteins are classified with their target compounds
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Abstract
A laminin receptor binding molecule is provided herein which promotes laminin receptor signal transduction and/or mediated event in a mammal and which may be used for treating diseases associated with an inefficient activation of a laminin receptor or an inefficient activation of a laminin receptor downstream effector. This molecule may also be used to inhibit laminin and its receptor mediated signaling in a mammal in need thereof.
Description
TfTLE:
LAMININ RECEPTOR BINDING MOLECULE
FIELD OF THE INVENTION
This invention relates to a laminin receptor binding molecule. More particularly, the present invention relates to a laminin receptor binding molecule derived from and its use for promoting signal transduction, such as laminin receptor mediated signal transduction, in a mammalian cell and its use to inhibit laminin and its receptor mediated signaling.
BACKGROUND OF THE INVENTION
Laminins are a family of heterotrimeric protein that resides primarily in the basal lamina. They function via binding interactions with neighboring cell receptors, and are important signaling molecules that can strongly influence cellular function.
Laminins are composed of one each of the five known alpha, three known beta, and three known gamma chains. Laminins may be assembled into at least 15 isoforms made from combinations of the various alpha, beta and gamma chains. Laminin-1, for example, is composed of alpha-1, beta-1 and gamma-1 isoforms.
Four structurally-defined family groups of laminins have been identified. The first group of five identified laminin molecules all share the beta-1 and gamma-1 chains, and vary by their alpha-chain composition (alpha-1 to alpha-5 chain). The second group of five identified laminin molecules all share the beta-1 and gamma-1 chain, and again vary by their alpha-chain composition. The third group of identified laminin molecules has one identified member, laminin 5, with a chain composition of alpha-3, beta-3, gamma-2. The fourth group of identified laminin molecules has one identified member, laminin 12, with the gamma-3 chain (alpha-2, beta-1, gamma-3).
Laminins mediate the attachment of both epithelial and neoplastic cells to the basement membrane, a ubiquitous, specialized type of extracellular matrix.
Interaction of cells with this matrix is an important aspect of both normal and neoplastic cellular processes. Normal cells appear to require an extracellular matrix for survival, proliferation, and differentiation, while migratory cells, both normal and neoplastic, must traverse the basement membrane in moving from one tissue to another.
Laminins are therefore important in both maintaining celUtissue phenotype as well as promoting cell growth and differentiation in tissue repair and development.
The laminin molecule integrates various matrix and cell interactive functions into one molecule.
Laminin alpha chain may have specific as well as overlapping functions. Unique phenotypes have linked alpha-2 to a muscular dystrophy subset (Tome F.M., et al., C
R Acad Sci III 317:351, 1994). In fact, the absence of this laminin chain, in 13 patients seems to be associated with Fukuyama congenital muscular dystrophy. Impaired laminin alpha-3 chain expression seems to be involved in epidermolysis bullosa (Baudoin C., et al., J Invest Dermatol 104:597, 1995). The alpha-5 chain seems to contribute to vascular occlusion in sickle cell disease (Lee, S.P. et al.
Blood, Vol. 92 No. 8, 1998: pp. 2951-2958).
One class of laminin receptors is the integrins, which are cell surface receptors that mediate many cell-matrix and cell-cell interactions. Some integrins have only one or a few known ligands, whereas others appear to be very promiscuous. Integrins, activated through binding to their ligands, transduce signals via kinase activation cascades, such as focal adhesion and mitogen-activated kinases. Several different integrins may bind different laminin isoforms. (Aumailley et al., In The Laminins, Timpl and Ekblom, eds., Harwood Academic Publishers, Amsterdam. pp. 127-158 (1996)) Other laminin receptors have been identified and include, dystroglycan, heparan sulfate proteoglycans, sulfatides, HNK-1 (alpha-1 chain) and lutheran (alpha-5 chain).
Laminin receptor, by mediating the attachment of both epithelial and neoplastic cells to the basement membrane, plays a critical role in controlling, for example, the metastatic process. The relationship between lamin and MMP-9 regulation has been the subject of several papers (JBC, 1995, vo1270, p 10365-68; J. immunology, 2003, vol 171, p 398-406, Cancer Research, 2004, vol 64, p 4810-4816) PSP94 inhibits the growth of tumor cells (see U.S. Pat. No.: 5,428,011 to Seth et al., the entire content of which is incorporated herein by reference). Tumor growth inhibition by PSP94 fragment such as PCK3145, has also been observed in animal models (see International application No. PCT/CA01/01463 to Garde, S. et al., published under No.: W002/33090, the entire content of which is incorporated herein by reference). PSP94 also reduces the development of skeletal metastasis (see International application No.: PCT/CA02/01737 to Rabbani, S. et al., published under No.: W003/039576, the entire content of which is incorporated herein by reference).
This latter characteristic was observed by a reduction in calcium levels and hind limb paralysis following administration of PSP94 to animal modeling prostate cancer. It was also found that PCK3145 is able to reduce matrix metalloproteinases (MMP) plasma levels. These results were observed by administering the drug to patients characterized as having metastatic adenocarcinoma of the prostate, stage IV
prostatic cancer and as having a metastatic hormone resistant prostatic cancer as described in Canadian Patent application no. 2,441,695 published on March 26, 2005, the entire content of which is incorporated herein by reference.
SUMMARY OF THE INVENTION
This invention relates to molecule derived from PSP94 (PSP94 fragment) and its use to promote signal transduction in a mammalian cell, such as laminin receptor signal transduction.
This invention also relates to the use of a molecule derived from PSP94 (PSP94 fragment) to inhibit laminin and its receptor mediated signaling.
This invention also relates to targeting of cell surface laminin binding activities by a PSP94 fragment (PCK3145 (SEQ ID N0.:5, SEQ ID N0.:7 and derivatives).
This invention also relates to regulation of HuR expression by a PSP94 fragment (PCK3145 (SEQ ID N0.:5, SEQ ID N0.:7 and derivatives) and the use of PSP94 fragments in the treatment of diseases affected by (associated with, linked with) HuR
expression.
HuR regulation by a PSP94 fragment may be, for example, at the transcriptional level and/or at the level of protein expression.
The present invention also relates to a laminin receptor binding molecule derived from PSP94 (PSP94 fragment) and its use to trigger laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event.
LAMININ RECEPTOR BINDING MOLECULE
FIELD OF THE INVENTION
This invention relates to a laminin receptor binding molecule. More particularly, the present invention relates to a laminin receptor binding molecule derived from and its use for promoting signal transduction, such as laminin receptor mediated signal transduction, in a mammalian cell and its use to inhibit laminin and its receptor mediated signaling.
BACKGROUND OF THE INVENTION
Laminins are a family of heterotrimeric protein that resides primarily in the basal lamina. They function via binding interactions with neighboring cell receptors, and are important signaling molecules that can strongly influence cellular function.
Laminins are composed of one each of the five known alpha, three known beta, and three known gamma chains. Laminins may be assembled into at least 15 isoforms made from combinations of the various alpha, beta and gamma chains. Laminin-1, for example, is composed of alpha-1, beta-1 and gamma-1 isoforms.
Four structurally-defined family groups of laminins have been identified. The first group of five identified laminin molecules all share the beta-1 and gamma-1 chains, and vary by their alpha-chain composition (alpha-1 to alpha-5 chain). The second group of five identified laminin molecules all share the beta-1 and gamma-1 chain, and again vary by their alpha-chain composition. The third group of identified laminin molecules has one identified member, laminin 5, with a chain composition of alpha-3, beta-3, gamma-2. The fourth group of identified laminin molecules has one identified member, laminin 12, with the gamma-3 chain (alpha-2, beta-1, gamma-3).
Laminins mediate the attachment of both epithelial and neoplastic cells to the basement membrane, a ubiquitous, specialized type of extracellular matrix.
Interaction of cells with this matrix is an important aspect of both normal and neoplastic cellular processes. Normal cells appear to require an extracellular matrix for survival, proliferation, and differentiation, while migratory cells, both normal and neoplastic, must traverse the basement membrane in moving from one tissue to another.
Laminins are therefore important in both maintaining celUtissue phenotype as well as promoting cell growth and differentiation in tissue repair and development.
The laminin molecule integrates various matrix and cell interactive functions into one molecule.
Laminin alpha chain may have specific as well as overlapping functions. Unique phenotypes have linked alpha-2 to a muscular dystrophy subset (Tome F.M., et al., C
R Acad Sci III 317:351, 1994). In fact, the absence of this laminin chain, in 13 patients seems to be associated with Fukuyama congenital muscular dystrophy. Impaired laminin alpha-3 chain expression seems to be involved in epidermolysis bullosa (Baudoin C., et al., J Invest Dermatol 104:597, 1995). The alpha-5 chain seems to contribute to vascular occlusion in sickle cell disease (Lee, S.P. et al.
Blood, Vol. 92 No. 8, 1998: pp. 2951-2958).
One class of laminin receptors is the integrins, which are cell surface receptors that mediate many cell-matrix and cell-cell interactions. Some integrins have only one or a few known ligands, whereas others appear to be very promiscuous. Integrins, activated through binding to their ligands, transduce signals via kinase activation cascades, such as focal adhesion and mitogen-activated kinases. Several different integrins may bind different laminin isoforms. (Aumailley et al., In The Laminins, Timpl and Ekblom, eds., Harwood Academic Publishers, Amsterdam. pp. 127-158 (1996)) Other laminin receptors have been identified and include, dystroglycan, heparan sulfate proteoglycans, sulfatides, HNK-1 (alpha-1 chain) and lutheran (alpha-5 chain).
Laminin receptor, by mediating the attachment of both epithelial and neoplastic cells to the basement membrane, plays a critical role in controlling, for example, the metastatic process. The relationship between lamin and MMP-9 regulation has been the subject of several papers (JBC, 1995, vo1270, p 10365-68; J. immunology, 2003, vol 171, p 398-406, Cancer Research, 2004, vol 64, p 4810-4816) PSP94 inhibits the growth of tumor cells (see U.S. Pat. No.: 5,428,011 to Seth et al., the entire content of which is incorporated herein by reference). Tumor growth inhibition by PSP94 fragment such as PCK3145, has also been observed in animal models (see International application No. PCT/CA01/01463 to Garde, S. et al., published under No.: W002/33090, the entire content of which is incorporated herein by reference). PSP94 also reduces the development of skeletal metastasis (see International application No.: PCT/CA02/01737 to Rabbani, S. et al., published under No.: W003/039576, the entire content of which is incorporated herein by reference).
This latter characteristic was observed by a reduction in calcium levels and hind limb paralysis following administration of PSP94 to animal modeling prostate cancer. It was also found that PCK3145 is able to reduce matrix metalloproteinases (MMP) plasma levels. These results were observed by administering the drug to patients characterized as having metastatic adenocarcinoma of the prostate, stage IV
prostatic cancer and as having a metastatic hormone resistant prostatic cancer as described in Canadian Patent application no. 2,441,695 published on March 26, 2005, the entire content of which is incorporated herein by reference.
SUMMARY OF THE INVENTION
This invention relates to molecule derived from PSP94 (PSP94 fragment) and its use to promote signal transduction in a mammalian cell, such as laminin receptor signal transduction.
This invention also relates to the use of a molecule derived from PSP94 (PSP94 fragment) to inhibit laminin and its receptor mediated signaling.
This invention also relates to targeting of cell surface laminin binding activities by a PSP94 fragment (PCK3145 (SEQ ID N0.:5, SEQ ID N0.:7 and derivatives).
This invention also relates to regulation of HuR expression by a PSP94 fragment (PCK3145 (SEQ ID N0.:5, SEQ ID N0.:7 and derivatives) and the use of PSP94 fragments in the treatment of diseases affected by (associated with, linked with) HuR
expression.
HuR regulation by a PSP94 fragment may be, for example, at the transcriptional level and/or at the level of protein expression.
The present invention also relates to a laminin receptor binding molecule derived from PSP94 (PSP94 fragment) and its use to trigger laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event.
The present invention further relates to the use of a PSP94 fragment in the treatment of a condition or disease associated with an inefficient activation of a laminin receptor or an inefficient (insufficient) activation of a laminin receptor downstream effector (e.g., ERK, etc.).
The present invention also relates to a soluble laminin-like peptidic molecule which may be useful to promote activation of a laminin receptor.
The present invention also relates to the use of a laminin receptor binding molecule in the detection of a laminin receptor or a laminin receptor carrying cell.
The present invention further relates to the use of a PSP94 fragment in the treatment of leukemia and for treating diseases mediated by laminin binding activities (e.g., cancer).
The present invention provides, in one aspect thereof, a method of promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event in a mammal which may comprise the step of administering to the mammal, a compound (or pharmaceutical composition comprising a compound) selected from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other biologically active PSP94 derived molecule.
The present invention further provides, in another aspect, a method of promoting laminin signal transduction-mediated event in a mammal which may comprise the step of administering to the mammal, a compound (or pharmaceutical composition comprising a compound) selected from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule.
In an additional aspect the present invention relates to the use of a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ
ID
N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule for promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event in a mammal in need thereof.
In another aspect the present invention relates to the use of a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID
N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule in the manufacture of a pharmaceutical composition (or drug) for promoting laminin receptor signal transduction and laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event, for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal.
In another aspect, the present invention provides the use of a compound which may be selected from the group consisting of;
a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SE4 ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d), in the preparation of a pharmaceutical composition (drug) for treating leukemia or other cancers (prostate cancer).
In yet another aspect the present invention relates to pharmaceutical compositions comprising a pharmaceutically acceptable carrier and a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID
N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule for promoting laminin receptor signal transduction andlor laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event in a mammal, for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal and/or for treating cancer (leukemia) in a mammal in need thereof.
The present invention further provides a method for detecting a laminin receptor (in a cell (e.g., on a cell surface), in a tissue, in a mammal, etc.) or a laminin receptor expressing cell or tissue, the method may comprise contacting a cell or tissue with a laminin receptor binding molecule of the present invention.
In accordance with the present invention, the laminin receptor binding molecule may be peptidic. Also in accordance with the present invention, the laminin receptor binding molecule may be a PSP94 derived molecule. In addition, further in accordance with the present invention, the laminin receptor binding molecule may be selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ
ID
N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d).
A "molecule derived from PSP94" is to be understood herein as any polypeptide originating from PSP94. For example, a PSP94 fragment, a PSP94 derivative, a PSP94 analogue, PCK3145 (SEQ ID N0.:5), a PCK3145 fragment, a PCK3145 derivative, a PCK3145 analogue, etc.
Therefore, in accordance with the present invention, a "molecule derived from PSP94"
may be selected, for example, from the group consisting of a) a SEQ ID N0.:1 biologically active derivative, b) a SE4 ID N0.:1 biologically active fragment, c) SEQ
ID NO.:1 biologically active analogue, d) SEQ ID N0.:5, e) a SEQ ID N0.:5 biologically active derivative, f) a SEQ ID N0.:5 biologically active fragment, g) a SEQ ID
N0.:5 biologically active analogue, h) SEO ID N0.:7, and i) combination of any one of a) through h) thereof.
A "molecule derived from PSP94" may also include, for example, SEQ ID NO.: 3, SEQ
ID N0.:4, SEQ ID N0.:6, as well as SEQ ID NO.: 9 to 98.
In accordance with the present invention the SEQ ID NO.:1 fragment may be selected, for example, from the group consisting of SEQ ID N0.:4 and SEO ID N0.:6.
Also in accordance with the present invention the SEQ ID N0.:1 derivative may be selected, for example, from the group consisting of SEQ ID N0.:2 and SEQ ID
N0.:3.
A "fragment' is to be understood herein as a polypeptide originating from a portion of an original or parent sequence. Fragments encompass polypeptides having truncations of one or more amino acids, wherein the truncation may originate from the amino terminus (N-terminus), carboxy terminus (C-terminus), or from the interior of the protein. A fragment may comprise the same sequence as the corresponding portion of the original sequence. For example, SEQ ID NO.: 4, SE4 ID NO.: 5 and SEQ ID
NO.:
6 fall into the definition of "a PSP94 fragment"; when considering PSP94 (SEQ
ID
N0.:1 ) as an original sequence.
A "derivative" is to be understood herein as a polypeptide originating from an original sequence or from a portion of an original sequence and which may comprise one or more modification; for example, one or more modification in the amino acid sequence (e.g., an amino acid addition, deletion, insertion, substitution etc.), one or more modification in the backbone or side-chain of one or more amino acid, or an addition of a group or another molecule to one or more amino acids (side-chains or backbone).
For example, SEQ ID NO.: 2, SEQ ID NO.: 3 and SEQ ID NO.: 7 fall into the definition of "a PSP94 derivative"; when considering PSP94 (SEQ ID NO.:1) as an original sequence.
It is to be understood herein that SEQ ID NO.: 7 may fall into the definition of "a PCK3145 derivative" or "SEQ ID N0.:5 derivative when considering PCK3145 (SEQ
ID
N0.:5) as an original sequence. The addition of polyethylene glycol group (i.e., pegylation) to PCK3145 (SEQ ID N0.:5 or SEQ ID NO.: 7) also falls within the definition of "a PCK3145 derivative". It is to be understood that SEQ ID NO.:
5 and SEQ ID NO.: 7 are biologically equivalent as desmonstrated herein and may be interchanged.
An "analogue" is to be understood herein as a molecule having a biological activity and chemical structure similar to that of a polypeptide described herein. An "analogue"
may have sequence similarity with that of an original sequence or a portion of an original sequence and may also have a modification of its structure as discussed herein. For example, an "analogue" may have at least 90 % sequence similarity with an original sequence or a portion of an original sequence. An "analogue" may also have, for example; at least 70 % or even 50 % sequence similarity (or less, i.e., at least 40%) with an original sequence or a portion of an original sequence.
Also, an "analogue" may have, for example, 50 % sequence similarity to an original sequence with a combination of one or more modification in a backbone or side-chain of an amino acid, or an addition of a group or another molecule, etc.
The present invention also relates to a soluble laminin-like peptidic molecule which may be useful to promote activation of a laminin receptor.
The present invention also relates to the use of a laminin receptor binding molecule in the detection of a laminin receptor or a laminin receptor carrying cell.
The present invention further relates to the use of a PSP94 fragment in the treatment of leukemia and for treating diseases mediated by laminin binding activities (e.g., cancer).
The present invention provides, in one aspect thereof, a method of promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event in a mammal which may comprise the step of administering to the mammal, a compound (or pharmaceutical composition comprising a compound) selected from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other biologically active PSP94 derived molecule.
The present invention further provides, in another aspect, a method of promoting laminin signal transduction-mediated event in a mammal which may comprise the step of administering to the mammal, a compound (or pharmaceutical composition comprising a compound) selected from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule.
In an additional aspect the present invention relates to the use of a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ
ID
N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule for promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event in a mammal in need thereof.
In another aspect the present invention relates to the use of a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID
N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule in the manufacture of a pharmaceutical composition (or drug) for promoting laminin receptor signal transduction and laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event, for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal.
In another aspect, the present invention provides the use of a compound which may be selected from the group consisting of;
a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SE4 ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d), in the preparation of a pharmaceutical composition (drug) for treating leukemia or other cancers (prostate cancer).
In yet another aspect the present invention relates to pharmaceutical compositions comprising a pharmaceutically acceptable carrier and a compound selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ ID N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID
N0.:5 biologically active analog, and e) combination of any one of a) through d) thereof or any other PSP94 derived molecule for promoting laminin receptor signal transduction andlor laminin receptor signal transduction-mediated event, or for promoting laminin signal transduction-mediated event in a mammal, for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal and/or for treating cancer (leukemia) in a mammal in need thereof.
The present invention further provides a method for detecting a laminin receptor (in a cell (e.g., on a cell surface), in a tissue, in a mammal, etc.) or a laminin receptor expressing cell or tissue, the method may comprise contacting a cell or tissue with a laminin receptor binding molecule of the present invention.
In accordance with the present invention, the laminin receptor binding molecule may be peptidic. Also in accordance with the present invention, the laminin receptor binding molecule may be a PSP94 derived molecule. In addition, further in accordance with the present invention, the laminin receptor binding molecule may be selected, for example, from the group consisting of a) SEQ ID N0.:5, b) a SEQ
ID
N0.:5 biologically active derivative, c) a SEQ ID N0.:5 biologically active fragment, d) a SEQ ID N0.:5 biologically active analog, and e) combination of any one of a) through d).
A "molecule derived from PSP94" is to be understood herein as any polypeptide originating from PSP94. For example, a PSP94 fragment, a PSP94 derivative, a PSP94 analogue, PCK3145 (SEQ ID N0.:5), a PCK3145 fragment, a PCK3145 derivative, a PCK3145 analogue, etc.
Therefore, in accordance with the present invention, a "molecule derived from PSP94"
may be selected, for example, from the group consisting of a) a SEQ ID N0.:1 biologically active derivative, b) a SE4 ID N0.:1 biologically active fragment, c) SEQ
ID NO.:1 biologically active analogue, d) SEQ ID N0.:5, e) a SEQ ID N0.:5 biologically active derivative, f) a SEQ ID N0.:5 biologically active fragment, g) a SEQ ID
N0.:5 biologically active analogue, h) SEO ID N0.:7, and i) combination of any one of a) through h) thereof.
A "molecule derived from PSP94" may also include, for example, SEQ ID NO.: 3, SEQ
ID N0.:4, SEQ ID N0.:6, as well as SEQ ID NO.: 9 to 98.
In accordance with the present invention the SEQ ID NO.:1 fragment may be selected, for example, from the group consisting of SEQ ID N0.:4 and SEO ID N0.:6.
Also in accordance with the present invention the SEQ ID N0.:1 derivative may be selected, for example, from the group consisting of SEQ ID N0.:2 and SEQ ID
N0.:3.
A "fragment' is to be understood herein as a polypeptide originating from a portion of an original or parent sequence. Fragments encompass polypeptides having truncations of one or more amino acids, wherein the truncation may originate from the amino terminus (N-terminus), carboxy terminus (C-terminus), or from the interior of the protein. A fragment may comprise the same sequence as the corresponding portion of the original sequence. For example, SEQ ID NO.: 4, SE4 ID NO.: 5 and SEQ ID
NO.:
6 fall into the definition of "a PSP94 fragment"; when considering PSP94 (SEQ
ID
N0.:1 ) as an original sequence.
A "derivative" is to be understood herein as a polypeptide originating from an original sequence or from a portion of an original sequence and which may comprise one or more modification; for example, one or more modification in the amino acid sequence (e.g., an amino acid addition, deletion, insertion, substitution etc.), one or more modification in the backbone or side-chain of one or more amino acid, or an addition of a group or another molecule to one or more amino acids (side-chains or backbone).
For example, SEQ ID NO.: 2, SEQ ID NO.: 3 and SEQ ID NO.: 7 fall into the definition of "a PSP94 derivative"; when considering PSP94 (SEQ ID NO.:1) as an original sequence.
It is to be understood herein that SEQ ID NO.: 7 may fall into the definition of "a PCK3145 derivative" or "SEQ ID N0.:5 derivative when considering PCK3145 (SEQ
ID
N0.:5) as an original sequence. The addition of polyethylene glycol group (i.e., pegylation) to PCK3145 (SEQ ID N0.:5 or SEQ ID NO.: 7) also falls within the definition of "a PCK3145 derivative". It is to be understood that SEQ ID NO.:
5 and SEQ ID NO.: 7 are biologically equivalent as desmonstrated herein and may be interchanged.
An "analogue" is to be understood herein as a molecule having a biological activity and chemical structure similar to that of a polypeptide described herein. An "analogue"
may have sequence similarity with that of an original sequence or a portion of an original sequence and may also have a modification of its structure as discussed herein. For example, an "analogue" may have at least 90 % sequence similarity with an original sequence or a portion of an original sequence. An "analogue" may also have, for example; at least 70 % or even 50 % sequence similarity (or less, i.e., at least 40%) with an original sequence or a portion of an original sequence.
Also, an "analogue" may have, for example, 50 % sequence similarity to an original sequence with a combination of one or more modification in a backbone or side-chain of an amino acid, or an addition of a group or another molecule, etc.
Thus, biologically active pofypeptides in the form of the original polypeptides, fragments (modified or not), analogues (modified or not), derivatives (modified or not), homologues, (modified or not) of PSP94 and PCK3145 are encompassed by the present invention.
Therefore, any polypeptide having a modification compared to an original polypeptide (e.g., PSP94, PCK3145) which does not destroy significantly a desired biological activity is encompassed herein. It is well known in the art, that a number of modifications may be made to the polypeptides of the present invention without deleteriously affecting their biological activity. These modifications may, on the other hand, keep or increase the biological activity of the original polypeptide or may optimize one or more of the particularity (e.g. stability, bioavailability, etc.) of the polypeptides of the present invention which, in some instance might be desirable.
Polypeptides of the present invention comprises for example, those containing amino acid sequences modified either by natural processes, such as posttranslational processing, or by chemical modification techniques which are known in the art.
Modifications may occur anywhere in a polypeptide including the polypeptide backbone, the amino acid side-chains and the amino- or carboxy-terminus. It will be appreciated that the same type of modification may be present in the same or varying degrees at several sites in a given polypeptide. Also, a given polypeptide may contain many types of modifications. Polypeptides may be branched as a result of ubiquitination, and they may be cyclic, with or without branching. Cyclic, branched and branched cyclic polypeptides may result from posttranslational natural processes or may be made by synthetic methods. Modifications comprise for example, without limitation, pegylation, acetylation, acylation, addition of acetomidomethyl (Acm) group, ADP-ribosylation, alkylation, amidation, biotinylation, carbamoylation, carboxyethylation, esterification, covalent attachment to fiavin, covalent attachment to a heme moiety, covalent attachment of a nucleotide or nucleotide derivative, covalent attachment of drug, covalent attachment of a marker (e.g., fluorescent, radioactive, etc.), covalent attachment of a lipid or lipid derivative, covalent attachment of phosphatidylinositol, cross-linking, cyclization, disulfide bond formation, demethylation, formation of covalent cross-links, formation of cystine, formation of pyroglutamate, formylation, gamma-carboxylation, glycosylation, GPI anchor formation, hydroxylation, iodination, methylation, myristoylation, oxidation, proteolytic processing, phosphorylation, prenylation, racemization, selenoylation, sulfation, transfer-RNA
mediated addition of amino acids to proteins such as arginylation and ubiquitination, etc. It is to be understood herein that more than one modification to the polypeptides described herein are encompassed by the present invention to the extent that the biological activity is similar to the original (parent) polypeptide.
As discussed above, polypeptide modification may comprise, for example, amino acid insertion (i.e., addition), deletion and substitution (i.e., replacement), either conservative or non-conservative (e.g., D-amino acids, desamino acids) in the polypeptide sequence where such changes do not substantially alter the overall biological activity of the polypeptide which is, for example, to reduce the level of expression of matrix metalloproteinases or pro-matrix metalloproteinases and/or to reduce their enzymatic activity.
Example of substitutions may be those, which are conservative (i.e., wherein a residue is replaced by another of the same general type or group) or when wanted, non-conservative (i.e., wherein a residue is replaced by an amino acid of another type). In addition, a non-naturally occurring amino acid may substitute for a naturally occurring amino acid (i.e., non-naturally occurring conservative amino acid substitution or a non-naturally occurring non-conservative amino acid substitution).
As is understood, naturally occurring amino acids may be sub-classified as acidic, basic, neutral and polar, or neutral and non-polar. Furthermore, three of the encoded amino acids are aromatic. It may be of use that encoded polypeptides differing from the determined polypeptide of the present invention contain substituted codons for amino acids, which are from the same type or group as that of the amino acid be replaced. Thus, in some cases, the basic amino acids Lys, Arg and His may be interchangeable; the acidic amino acids Asp and Glu may be interchangeable;
the neutral polar amino acids Ser, Thr, Cys, Gln, and Asn may be interchangeable;
the non-polar aliphatic amino acids Gly, Ala, Val, Ile, and Leu are interchangeable but because of size Gly and Ala are more closely related and Val, Ile and Leu are more closely related to each other, and the aromatic amino acids Phe, Trp and Tyr may be interchangeable.
It should be further noted that if the polypeptides are made synthetically, substitutions by amino acids, which are not naturally encoded by DNA (non-naturally occurring or unnatural amino acid) may also be made.
A non-naturally occurring amino acid is to be understood herein as an amino acid which is not naturally produced or found in a mammal. A non-naturally occurring amino acid comprises a D-amino acid, an amino acid having an acetylaminomethyl group attached to a sulfur atom of a cysteine, a pegylated amino acid, etc.
The inclusion of a non-naturally occurring amino acid in a defined polypeptide sequence will therefore generate a derivative of the original polypeptide. Non-naturally occurring amino acids (residues) include also the omega amino acids of the formula NH2(CH2)nCOOH wherein n is 2-6, neutral nonpolar amino acids, such as sarcosine, t butyl alanine, t-butyl glycine, N-methyl isoleucine, norleucine, etc.
Phenylglycine may substitute for Trp, Tyr or Phe; citrulline and methionine sulfoxide are neutral nonpolar, cysteic acid is acidic, and ornithine is basic. Proline may be substituted with hydroxyproline and retain the conformation conferring properties.
It is known in the art that analogues may be generated by substitutional mutagenesis and retain the biological activity of the polypeptides of the present invention. These analogues have at least one amino acid residue in the protein molecule removed and 1 S a different residue inserted in its place. For example, one site of interest for substitutional mutagenesis may include but are not restricted to sites identified as the active site(s), or immunological site(s). Other sites of interest may be those, for example, in which particular residues obtained from various species are identical.
These positions may be important for biological activity. Examples of substitutions identified as "conservative substitutions" are shown in table 1. If such substitutions result in a change not desired, then other type of substitutions, denominated "exemplary substitutions" in table 1, or as further described herein in reference to amino acid classes, are introduced and the products screened.
In some cases it may be of interest to modify the biological activity of a polypeptide by amino acid substitution, insertion, or deletion. For example, modification of a polypeptide may result in an increase in the polypeptide's biological activity, may modulate its toxicity, may result in changes in bioavailability or in stability, or may modulate its immunological activity or immunological identity. Substantial modifications in function or immunological identity are accomplished by selecting substitutions that differ significantly in their effect on maintaining (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation. (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain. Naturally occurring residues are divided into groups based on common side chain properties:
(1 ) hydrophobic: norleucine, methionine (Met), Alanine (Ala), Valine (Val), Leucine (Leu), Isoleucine (11e) (2) neutral hydrophilic: Cysteine (Cys), Serine (Ser), Threonine (Thr) (3) acidic: Aspartic acid (Asp), Glutamic acid (Glu) (4) basic: Asparagine (Asn), Glutamine (Gln), Histidine (His), Lysine (Lys), Arginine (Arg) (5) residues that influence chain orientation: Glycine (Gly), Proline (Pro);
and aromatic: Tryptophan (Trp), Tyrosine (Tyr), Phenylalanine (Phe) Non-conservative substitutions will entail exchanging a member of one of these classes for another.
TABLE 1, amino acid substitution Original residueExemplary substitutionConservative substitution ~
Ala (A) Val, Leu, Ile Val Arg (R) Lys, Gln, Asn Lys Asn (N) Gln, His, Lys, Arg Gln Asp (D) Glu Glu Cys (C) Ser Ser Gln (Q) Asn Asn Glu (E) Asp Asp Gly (G) Pro Pro His (H) Asn, Gln, Lys, Arg Arg Ile (I) Leu, Val, Met, Ala,Leu Phe, norleucine Leu (L) Norleucine, Ile, Ile Val, Met, Ala, Phe Lys (K) Arg, Gln, Asn Arg Met (M) Leu, Phe, Ile Leu Phe (F) Leu, Val, Ile, Ala Leu Pro (P) Gly Gly Ser (S) Thr Thr Thr (T) Ser Ser Trp (V1/) Tyr Tyr Tyr (Y) Trp, Phe, Thr, Ser Phe Val (V) Ile, Leu, Met, Phe,Leu Ala, norleucine Example of biologically active analogues of PCK3145 (SEQ ID NO: 5) exemplified by amino acid substitutions is illustrated below.
Position 1 5 10 15 (SEQ ID
X, W Q X2 D X, C X1 X2 C X2 C X3 X, X2 N0.:88) For example, X~ may be glutamic acid (i.e., glutamate) (Glu), aspartic acid (aspartate) (Asp), or asparagine (Asn), X2 may be threonine (Thr) or serine (Ser) and X3 may be tyrosine (Tyr) or phenylalanine (Phe). Any replacement of an original residue in SEQ
ID N0.:5 with a conserved amino acid (i.e. conservative substitution) is encompassed by the present invention. , Another example of a PCK3145 (SEQ ID NO: 5) analogue may include, for example, a polypeptide as exemplified in SEQ ID N0.:88 or any other polypeptide having at least one conservative amino acid substitution (illustrated in bold below) as defined in Table 1 S 1, such as, for example;
Glu Tyr Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:92) Glu Trp Asn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:93) Glu Trp Gln Thr Asp Gln Ser Glu Thr Cys Thr Cys Tyr Asp Thr (SEQ ID N0.:94) Examples of a PCK3145 (SEQ ID NO: 5) derivative may include, for example, a polypeptide having an addition in one or both of the terminal region (amino-terminal or carboxy-terminal) as illustrated in SEQ IDs No.: 9 to 87, a peptide having a stabilizing group such as exemplified in SEQ ID N0.:7, or a peptide having one or more repeats of SEQ ID No.:5 such as exemplified in SEQ ID NOs.: 89 to 91, a polypeptide having at least one D-amino acid as exemplified in SEQ ID No. 98 and combination thereof.
An example of a PCK3145 (SEQ ID NO: 5) fragment may include, for example, a polypeptide having a truncation in one or both of the terminal regions (amino-terminal or carboxy-terminal) as illustrated below.
Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:95) Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:96) Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys (SEQ ID N0.:97) Polypeptides may be either naturally occurring (that is to say, substantially purified or isolated from a natural source) or synthetic (for example, by performing site-directed mutagenesis on the encoding DNA or made by other synthetic methods such as chemical synthesis). It is thus apparent that the polypeptides of the invention can be either naturally occurring or recombinant (that is to say prepared from the recombinant DNA techniques) or made by chemical synthesis (e.g., organic synthesis).
As used herein, "pharmaceutical composition" means therapeutically effective amounts of the agent together with pharmaceutically acceptable diluents, preservatives, solubilizers, emulsifiers, adjuvant and/or carriers. A
"therapeutically effective amount" as used herein refers to that amount which provides a therapeutic effect for a given condition and administration regimen. Such compositions are liquids or lyophilized or otherwise dried formulations and include diluents of various buffer content (e.g., Tris-HCL, acetate, phosphate), pH and ionic strength, additives such as albumin or gelatin to prevent absorption to surfaces, detergents (e.g., Tween 20, Tween 80, Pluronic F68, bile acid salts). Solubilizing agents (e.g., glycerol, polyethylene glycerol), anti-oxidants (e.g., ascorbic acid, sodium metabisulfite), preservatives (e.g., thimerosal, benzyl alcohol, parabens), bulking substances or tonicity modifiers (e.g., lactose, mannitol), covalent attachment of polymers such as polyethylene glycol to the protein, complexation with metal ions, or incorporation of the material into or onto particulate preparations of polymeric compounds such as polylactic acid, polyglycolic acid, hydrogels, etc, or onto liposomes, microemulsions, micelles, unilamellar or multilamellar vesicles, erythrocyte ghosts, or spheroplasts.
Such compositions will influence the physical state, solubility, stability, rate of in vivo release, and rate of in vivo clearance. Controlled or sustained release compositions include formulation in lipophilic depots (e.g., fatty acids, waxes, oils).
Also comprehended by the invention are particulate compositions coated with polymers (e.g., poloxamers or poloxamines). Other embodiments of the compositions of the invention incorporate particulate forms protective coatings, protease inhibitors or permeation enhancers for various routes of administration, including parenteral, pulmonary, nasal, oral, vaginal, rectal routes. In one embodiment the pharmaceutical composition is administered parenterally, paracancerally, transmucosally, transdermally, intramuscularly, intravenously, intradermally, subcutaneously, intraperitonealy, intraventricularly, intracranially and intratumorally.
The formulations include those suitable for oral, rectal, ophthalmic, (including intravitreal or intracameral) nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous, intradermal, intratracheal, and epidural) administration. The formulations may conveniently be presented in unit dosage form and may be prepared by conventional pharmaceutical techniques. Such techniques include the step of bringing into association the active ingredient and the pharmaceutical carriers) or excipient(s). In general, the formulations are prepared by uniformly and intimately bringing into associate the active ingredient with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product.
Formulations of the present invention suitable for oral administration may be presented as discrete units such as capsules, cachets or tablets each containing a predetermined amount of the active ingredient; as a powder or granules; as a solution or a suspension in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water-in-oil emulsion and as a bolus, etc.
A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared by compressing, in a suitable machine, the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing agent. Molded tablets may be made by molding, in a suitable machine, a mixture of the powdered compound moistened with an inert liquid diluent.
The tablets may be optionally coated or scored and may be formulated so as to provide a slow or controlled release of the active ingredient therein.
Formulations suitable for topical administration in the mouth include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the ingredient to be administered in a suitable liquid carrier.
Formulations suitable for topical administration to the skin may be presented as ointments, creams, gels and pastes comprising the ingredient to be administered in a pharmaceutical acceptable carrier. An example of a topical delivery system is a transdermal patch containing the ingredient to be administered.
Formulations for rectal administration may be presented as a suppository with a suitable base comprising, for example, cocoa butter or a salicylate.
Formulations suitable for nasal administration, wherein the carrier is a solid, include a coarse powder having a particle size, for example, in the range of 20 to 500 microns which is administered in the manner in which snuff is administered, i.e., by rapid inhalation through the nasal passage from a container of the powder held close up to the nose. Suitable formulations, wherein the carrier is a liquid, for administration, as for example, a nasal spray or as nasal drops, include aqueous or oily solutions of the active ingredient.
Formulations suitable for vaginal administration may be presented as pessaries, tamports, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient;
and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze-dried (lyophilized) conditions requiring only the addition of the sterile liquid carrier, for example, water for injections, immediately prior to use.
Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets of the kind previously described.
Further, as used herein "pharmaceutically acceptable carrier" or "pharmaceutical carrier" are known in the art and include, but are not limited to, 0.01-0.1 M
or 0.05 M
phosphate buffer or 0.8 % saline. Additionally, such pharmaceutically acceptable carriers may be aqueous or non-aqueous solutions, suspensions, and emulsions.
Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate.
Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. Parenteral vehicles include sodium chloride solution, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's orfixed oils. Intravenous vehicles include fluid and nutrient replenishers, electrolyte replenishers such as those based on Ringer's dextrose, and the like.
Preservatives and other additives may also be present, such as, for example, antimicrobials, antioxidants, collating agents, inert gases and the like.
It is to be understood herein, that if a "range" or "group" of substances (e.g. amino acids), substituents" or the like is mentioned or if other types of a particular characteristic (e.g. temperature, pressure, chemical structure, time, etc.) is mentioned, the present invention relates to and explicitly incorporates herein each and every specific member and combination of sub-ranges or sub-groups therein whatsoever.
Thus, any specified range or group is to be understood as a shorthand way of referring to each and every member of a range or group individually as well as each and every possible sub-ranges or sub-groups encompassed therein; and similarly with respect to any sub-ranges or sub-groups therein. Thus, for example, with respect to a temperature greater than 100° C, this is to be understood as specifically incorporating herein each and every individual temperature state, as well as sub-range, above 100° C, such as for example 101 ° C, 105° C and up, 110° C and up, 115° C and up, 110 to 135° C, 115°
c to 135° C, 102° C to 150°
C, up to 210° C, etc.;
and similarly with respect to other parameters such as, concentrations, elements, etc...
It is in particular to be understood herein that the polypeptides of the present invention each include each and every individual polypeptide described thereby as well as each and every possible mutant, variant, homolog, analogue or else whether such mutant, variant, homolog, analogue or else is defined as positively including particular polypeptides, as excluding particular polypeptides or a combination thereof;
for example an exclusionary definition for a polypeptide analogue (e.g.
XiWQX2DX,CX1X2CX2CX3X,X2 (SEQ ID N0.88)) may read as follows: "provided that when one of X, is glutamic acid and X2 is threonine X3 may not be phenylalanine".
It is also to be understood herein that "g" or "gm" is a reference to the gram weight unit; that "C" is a reference to the Celsius temperature unit.
BRIEF DESCRIPTION OF THE DRAWINGS
In drawings which illustrates exemplary embodiments of the present invention;
Fig. 1A is a picture of a zymography gel showing the effect of the PCK3145 derivative (SEQ ID N0.:7) on MMP-9 levels and activity on collagen type 1- treated MatLyLu cells (first lane:marker; second lane:cells; third lane:cells and collagen;
fourth lane:cells, collagen and 500pg/ml of SEQ ID N0.:7; fifth lane:cells, collagen and 1 mg/ml of SEQ ID N0.:7), Fig.1 B is a picture of a western blot membrane showing the effect of the derivative (SEQ ID N0.:7) on MMP-9 expression level (fist lane: MMP9 standard;
second lane:cells; third lane:cells and collagen; fourth lane:cells, collagen and 100pg/ml of SEQ ID N0.:7; fifth lane: cells, collagen and 500p,g/ml of SEQ ID
N0.:7;
sixth lane: cells, collagen and 1 mg/ml of SEQ ID N0.:7), Fig. 1C is a picture of a time-course/dose-response experiment of a MMP-9 secretion (upper panel) and a graph (lower panel) expressing these results in a quantitative manner;
Fig. 2 is a picture of a MMP-9 zymography assay performed on cells induced with cytokines in the presence or absence of PCK3145;
Fig. 3A is the result of a sequence homology search performed on the PCK3145 amino acid sequence (SEQ ID N0.:5) with the Gene Bank Internet database, Fig. 3B is a picture of a westernblot illustrating the inhibitory effect of laminin on PCK3145 (PCK) induced ERK phosphorylation, Fig. 3C is a picture of a further westernblot illustrating the inhibitory effect of laminin on PCK3145 (PCK) induced ERK phosphorylation, Fig. 4A is a picture of a further westernblot illustrating expression of the laminin receptor in several cell lines, Fig. 4B represents pictures of western blots of PCK3145-induced ERK
phosphorylation in laminin receptor transfected U-87 cells or non-transfected cells (mock) and a graph illustrating the results in a quantitative manner, Fig. 5A is a picture of a westernblot performed with anti-laminin receptor or beta-actin antibody on various fractions collected from an affinity column coupled with (Affi-PCK) or not (Affi-Ctl), Fig. 5B is a histogram illustrating the results of Fig. 3A in a quantitative manner, Fig. 6A is a graph illustrating cell binding of labeled-PCK3145 at 4$C and intracellular uptake of labeled-PCK3145 at 37~C and the dilution effect of added unlabelled PCK3145 (cold), Fig. 6B is a histogram illustrating PCK3145 uptake competition experiments performed with scrambled polypeptides 1 (s1 ) and 2 (s2), native PSP94 (PSP), unlabelled PCK3145 (PCK) and laminin (LAM), Ctl=control, Fig. 6C is a histogram illustrating PCK3145 uptake competition experiments performed with green tea catechin (EGCg), green tea catechin lacking gallate moiety (EGC), unlabelled PCK3145 (cold PCK) and laminin (LAM), Ctl=control, Fig. 7A is dose-response of FITC-labeled PCK3145 binding to the cell surface measured by FACS analysis;
Fig. 7B is a graph obtained from FACS analysis of FITC-labeled PCK3145 binding to the cell surface in the absence (upper panel) and in the presence of laminin (lower panel);
Fig. 8A is a picture of a zymography gel showing the effect of the PCK3145 on levels in the presence or absence of laminin or the the laminin-derived SIKVAV
peptide;
Fig. 8B is a histogram quantifying the results obtained in Fig. 8A;
Fig. 9A is a picture illustrating the results of a time-course ERK
phosphorylation experiment determined by a Western blot performed on lyzates of cells incubated with various concentration of PCK3145 for;
Fig. 98 is a picture illustrating ERK-phophorylation determined by a Western blot performed on lyzates of cells incubated for 1 minute with various concentration of PCK3145 with or without the SIKVAV peptide;
Fig.10A are pictures of cells transfected with a laminin receptor or not (mock) adhering to PCK3145-coated dishes;
Fig. 10B is a graph of a time-course of cell (transfected with a laminin receptor or not) adhesion experiment performed on PCK3145-coated dish;
Fig. 10C-panel A. are pictures showing several cell density; panel B. shows expression of a laminin receptor in function of cell density by Western blot;
panel C. is a histogram of results of panel B. expressed in a quantitative manner; panel D. shows a time-course experiment of a laminin receptor expression in cells at a density of 105 by Western blot;
Fig. 11A are pictures of stained PVDF membranes obtained following electrophoresis and transfert of proteins eluted from a PCK3145 coupled affinity matrix;
Fig. 11 B represents the sequence of a first PCK3145 binding protein; serum albumin;
Fig. 11C represents the sequence of a first PCK3145 binding protein; enolase;
Fig.12A is a graph showing inhibition of cell adhesion to PCK3145-coated dishes by enolase or EGCg;
Fig.12B is a histogram showing results of competition of FITC-labeled PCK3145 binding to cells by enolase by FACS analysis;
Fig. 13A -panel A. represents graphs obtained from FACS analysis showing binding of biotinilated-laminin on cell surface (control; upper left panel) and inhibition of binding by excess unlabelled laminin (upper right panel), by PCK3145 (lower left panel) and by EGCg (lower right panel); panel B. is a histogram illustrating the results of panel A. in a quantitative manner;
Fig.13B are pictures of PVDF membranes obtained following electrophoresis of cell lyzates or enolase and transfer to membranes; detection was performed with biotinilated-laminin and streptavidin-HRP (horse radish peroxidase) or biotinilated-laminin and an anti-biotin antibody;
Fig.14 -panel A. is a picture of a gel loaded with RT-PCR-amplified HuR RNA
obtained from cells incubated with PCK3145 in the presence or absence of laminin (Lam) or the SIKVAV peptide; panel B. is a picture of a western blot performed on lyzates obtained from cells incubated with PCK3145 in the presence or absence of laminin (Lam) or the SIKVAV peptide where the level of HuR protein expression is detected with an anti-HuR antibody;
Fig.15 -panel A. represents graphs obtained from FACS analysis of cells incubated or not with PCK3145 and detected with either a labelled anti-CD44 antibody or a labelled anti-MMP-9 antibody; panel B. are histograms illustrating the results of panel A. in a quantitative manner, and;
Fig.16 is a schematic showing the biological effect of PCK3145.
DETAILED DESCRIPTION OF THE INVENTION
Test compounal. The wild type amino acid sequence of PCK3145 has been disclosed, for example, in international application No.: PCT/CA01/01463 and is defined herein in SE4 ID NO.: 5. A PCK3145 derivative has been generated by attaching an acetylaminomethyl group to the sulfur atom of each of the three cysteines of PCK3145. These groups stabilize the compound by preventing formation of peptide dimers or polymer by blocking the sulfhydryl group of cysteines. This PCK3145 derivative is defined in SEQ ID NO.: 7. The drug was manufactured by Multiple Peptide Systems (3550) (General Atomics Court, San Diego, Calif.) using standard solid-phase peptide chemistry and lyophilized into a powder. Other type of synthesis or manufacture method may however be performed to make a peptide or polypeptide of the invention. Other PCK3145 derivatives, analogs and fragments (e.g., SEQ
IDs NO: 88, 98, etc.) may be generated similarly.
Membrane protein labeling : Endothelial or cancer cell membrane proteins will be biotin labeled with EZ-Link Sulfo-NHS-Biotin (Pierce). Confluent dishes containing approximately 3x106 cells will be rinsed with cold PBS and incubated at 4°C with 4 mg of Sulfo-NHS-Biotin. The biotin reagent will be neutralized with Tris-buffer saline. Cells will then be scraped off the dish, pelleted by centrifugation, and lysed with 0.5%
Nonidet P-40 in PBS (NP/PBS). Soluble-labeled membrane proteins will be collected after centrifugation at 11,OOOg at 4°C and used for either BIAcore studies, immunoprecipitations or affinity gel chromatography approaches.
Affinity chromatography will be performed with PCK3145 or scrambled peptide linked to Affi-gel 10 or 15. Four mg of peptide will be coupled overnight to Affi-gel resin in 100 mmol/L sodium carbonate buffer, pH 8.5. Remaining active groups blocked with 100 mmol/L diethanolamine, and the resin equilibrated with NP/PBS. Beads blocked with diethanolamine or to which scrambled peptide or PCK3145 were coupled will be used as control. Biotin-labeled membrane proteins will be passed through the column and allowed to incubate for 30 min. After washing with 50 ml of NP/PBS, bound proteins will be eluted successively with either increasing concentrations of PCK3145, or with successively 5 mmol/L EDTA, 1 mol/L NaCI, and 4 mol/L urea. Fractions will be collected (500 p,1) and screened for the presence of biotin-labeled proteins.
Biotin containing fractions will be pooled and dialyzed against water. Aliquots from each fraction will be electrophoresed on 7-12% SDS-PAGE and transferred to nitrocellulose membranes, and biotin-labeled proteins detected with streptavidin-horseradish peroxidase and enhanced chemiluminescence (ECL). Differentially expressed proteins will then be sent for amino acid sequencing.
Materials. Cell culture media were obtained from Life Technologies (Burlington, Ontario, Canada) and serum was purchased from Hyclone Laboratories (Logan, UT).
Electrophoresis reagents were purchased from Bio-Rad (Mississauga, Ontario, Canada). The polyclonal (C-1158) and monoclonal (A3) antibodies, used for precipitation and detection, respectively, of VEGFR-2, and the anti-PDGFR pAb (958) were obtained from Santa Cruz Biotechnologies (Santa Cruz, CA).
Antiphosphotyrosine mAb PY99 was also purchased from Santa Cruz Biotechnologies.
Anti-phospho-ERK polyclonal antibodies were from Cell Signaling Technology (Beverly, MA). Antimouse and anti-rabbit horseradish peroxidase-linked secondary antibodies were purchased from Jackson ImmunoResearch Laboratories (West Grove, PA) and enhanced chemiluminescence (ECL) reagents were from Amersham Pharmacia Biotech (Baie d'Urf~, Quebec, Canada). Human recombinant PDGF was obtained from R&D Systems (Minneapolis, MN). Micro bicinchoninic acid protein assay reagents were from Pierce (Rockford, IL). All other reagents were from Sigma-Aldrich Canada.
Immunoprecipitation and immunoblotting procedures. After treatment with cytokines, cells were washed once with phosphate-buffered saline (PBS) containing 1 mM sodium orthovanadate and were incubated in the same medium for 1 h at 4°C.
The cells were solubilized on ice in lysis buffer (150 mM NaCI, 10 mM Tris-HCI, pH
7.4, 1 mM EDTA, 1 mM EGTA, 0.5% Nonidet P-40, 1 % Triton X-100) containing 1 mM
sodium orthovanadate. The cells were then scraped from the culture dishes and the resulting lysates were clarified by centrifugation at 10,OOOg for 10 min.
Protein concentrations were determined using the micro bicinchoninic acid method. For immunoprecipitation studies, lysates were clarified by a 1 h incubation at 4°C with a mixture of Protein A/Protein G Sepharose beads. After removal of the Sepharose beads by low-speed centrifugation, identical amounts of protein (200 ,ug) from each sample were transferred to fresh tubes and incubated in lysis buffer overnight at 4°C in the presence of 2 pg/ml of specific antibodies. Immunocomplexes were collected by incubating the mixture with 25 ,u1 (50% suspension) of Protein A- (rabbit primary antibody) or Protein G- (mouse primary antibody) Sepharose beads, for 2 h.
Nonspecifically-bound material was removed by washing the beads three times in 1 ml of lysis buffer containing 1 mM sodium orthovanadate, and bound material was solubilized in 25,u1 of two-fold concentrated Laemmli sample buffer, boiled 5 min, and resolved by SDS-PAGE. The proteins were transferred onto polyvinylidene difluoride (PVDF) membranes, blocked 1 h at room temperature with Tris-buffered salinelTween 20 (147 mM NaCI, 20 mM TrisJHCI, pH 7.5, and 0.1 % Tween 20) containing 2%
bovine serum albumin and incubated overnight at 4°C with primary antibody.
Immunoreactive bands were revealed after a 1 h incubation with horseradish peroxidase-conjugated anti-mouse or anti-rabbft antibodies, and the signals were visualized by enhanced chemiluminescence (Amersham Biosciences, Baie d'Urfee, QC).
Biologically active molecule; Fragments, derivatives and analogues may be prepared by techniques known in the art (recombinant technology, solid phase synthesis, etc.). The biological activity of derivatives, fragments and analogues may be determined by any of the techniques described herein (effect on ERK
phosphorylation) or known in the field to be relevant for any of the biological activity described herein.
Effect on MMP-9 extracellular levels Zymography assays and western blots were performed on cell lines incubated with a PCK3145 derivative (SEQ ID N0.:7).
In the experiment presented in Fig. 1 A, 2.5x105 MatLyLu tumor cells (American Type Culture Collection No.: JHU-5)) were seeded in T-25 flasks containing RPMI
with 10%
fetal bovine serum (FBS). After overnight incubation, the cells were washed once with serum free medium and treated with various concentrations of the PCK3145 derivative (500ug/ml and 1 mg/ml) in the presence of 50ug/ml collagen type-I in serum free RPMI
for 72 hrs. Control cells received 50ug/ml collagen or only serum free medium.
The media were collected after 72 hours of exposure to the PCK3145 derivative and subjected to gelatin zymography. Zymography for MMP-2 and MMP-9 was performed in SDS-polyacrylamide gel electrophoresis (SDS-PAGE) (10%) containing 0.1 gelatin (Invitrogen). Twenty-four microliters of culture media was mixed with non-reducing sample buffer and subjected to electrophoresis without boiling. After electrophoresis, gels were soaked for 30 minutes in 2.5% Triton X-100 solution with 2-3 washing steps. The gels were then incubated for 18 hours at 37gC in buffer containing 50 mM Tris/HCI, pH 7.6, 50 mM NaCI, lOmM CaCl2 and 0.05% Brij-35.
After incubation, the gels were stained with 0.2% Coomassie blue and de-stained until clear proteolytic bands appeared. Gels were scanned with Microtek flatbed scanner (Scanmaker 5 software; Microtek lab, Redondo Beach, CA). The band intensities were determined using the Image Quant software (version 5.0) from molecular Dynamics.
The MMP-9 and MMP-2 gelatinase zymography standard were purchased from Chemicon (catalogue no. CC073). One nanogram of purified human pro-MMP-2 and pro-MMP-9 standards were used in every gel run.
Results of this experiment are illustrated in Fig.lA and indicate that PCK3145 derivative treatment of MatLyLu cells resulted in a dose-dependent reduction of MMP-9 secreted in the cell culture media (a reduction in MMP-9 extracellula levels), as detected by zymography.
Western blot A separate western blot experiment was performed in which MatLyLu cells were treated with 1 OOug/ml, 500ug/ml and 1 mg/ml of the PCK3145 derivative for 72 hrs. At the end of the experiment, the media were collected and concentrated 5 times using Amicon centrifugal filter devices (3500 molecular weight cut-off).
Twenty five microliters samples were separated on SDS-PAGE gel under reducing conditions using pre-cast gels of 4-12% Bis-Tris (Invitrogen). Following electrophoresis, the proteins were transferred on nitrocellulose membrane. Non-specific binding sites were blocked using 5 % skimmed milk in lOmM phosphate buffer saline (PBS) containing 0.05% Tween-20 for 1 hour at room temperature. The membrane was later incubated with a primary antibody (monoclonal, RDI-MMP-9abm-2A5) at a concentration of 1 ug/ml (in 10 mM PBS, containing 0.5% bovine serum albumin (BSA) and 0.05% Tween-20) for 3 hours at room temperature.
The membranes were washed three times in PBS (5 minutes each wash) to remove non-specific binding and they were incubated with the secondary antibody (Rabbit anti-mouse IgG horseradish peroxidase-conjugated (Dako no. 0260)) at a dilution of 1:5000 for one hour.
Detection of specific MMP-9 protein was made by incubating the membrane in ECLTM
reagent (electro-chemoluminescence, Roche) and exposing to the X-ray film.
Results of this experiment are illustrated in Fig.1 B and again indicate that treatment of MatLyLu cells PCK3145 derivative resulted in a dose-dependent reduction of MMP-extracellular levels.
Effect on cytokine-induced MMP-9 extracellular levels PCK3145 has been shown herein to inhibit basal MMP-9 secretion from cells including HT-1080 cells, a human fibrosarcoma cell line provided by American Type Culture Collection (ATCC, Manassas, USA). As will be shown below, this inhibitory effect is also observed on phorbol ester (PMA)- and tumor necrosis factor (TNF)-induced MMP-9 secretion. These two agents trigger specific intracellular signaling that lead either to intracellular Ca*~ release and protein kinase C (PKC) activation, or to TNF-induced signaling that collectively result into strong MMP-9 production. PCK3145 can thus be considered as a potential inhibitor of intracellular signal transduction as it antagonizes both PMA- and TNF-induced MMP-9 secretion as observed by gelatin-zymography (Fig 2).
Sequence homology Using GeneBank Internet data base, a homology search was performed using the amino acid sequence of PCK3145. Homology was found with different chain precursors of laminin (Fig.3A). These included the alpha-2, alpha-5, and beta-I chains of laminin.
The unexpected observation that PCK3145 shares, to some extent, homology with different structural chains of laminin suggests that it may indeed also share the same cell surface receptor.
Competition assays Competitions experiments using several extra-cellular matrix (ECM) purified proteins (including laminin), on the potential of PCK3145 to induce ERK (Extraceliular-signal Regulated protein Kinases 1 or 2) phosphorylation in U-87 cells were then performed.
Indeed, laminin was able to inhibit PCK3145-induced ERK phosphorylation but not Fibrinogen (FN), hyaluronic acid (HA), or Fibrin (Fib) (Fig. 3B). The specific antagonistic effect of laminin on PCK3145 was further confirmed in Fig. 3C.
PCK3145 binding/uptake assays These results strongly suggest that the laminin receptor potentially triggers some of the PCK3145 effects and may potentially be involved in transducing the signaling of PCK3145 from the cell surface. As such, the expression of the 67-kDa laminin receptor (metastasis-associated 67-kDa laminin receptor) in several cell lines was observed using specific immunodetection on cell lysates (20 ug) (Fig. 4A).
In fact, transfection of U-87 cells with the cDNA expressing the recombinant 67-kDa laminin receptor resulted in a significantly sustained PCK-induced ERK
phosphorylation between 10 and 20 minutes (Fig. 4B).
Affinity chromatography was performed to analyze PCK3145 binding to laminin receptor. Briefly, native PCK3145 was cross-linked to Sepharose-activated gel beads, followed by the loading of from U-87 cell lysate and extensive washing of the gel.
Immunodetection was then performed for laminin receptor in gels that have been either coupled or not to PCK3145. This experiment indicate that in fact the laminin receptor possesses affinity to PCK3145 (Fig. 5A) as shown by the increase in laminin receptor immunoreactivity.
Reprobing of that same membrane showed that a house keeping gene such as ~i-actin remained fairly constant and this was further quantified (Fig. 5B).
In order to shed some light into the kinetics of PCK3145 binding and uptake, was iodinated on its unique tyrosine and was used to perform binding assays at 4°C
and uptake at 37°C. PCK3145 is seen to be rapidly taken up into the U-87 cells within the first 20 minutes of incubation, and this uptake kinetic reached a plateau after about 1 hour of incubation (Fig. 6A). When the same kinetic was performed at 4°C, at which condition only binding to the cell surface is thought to happen with minimum intracellular uptake, a much lower saturable time-dependent binding of the radiolabeled PCK3145 was observed. Isotopic dilution is also observed in uptake experiments at 37°C when 10-times excess cold PCK3145 is co-incubated with radiolabeled-PCK3145, and this is reflected by a decreased uptake of PCK31145 to levels close to those found after 1 hr at 4°C. Competition experiments were also performed with different substrates and this was measured at 37gC after a one hour incubation. While Scrambled peptides 1 (s1 ) and 2 (s2) (e.g., SEQ ID N0.:99) had bearly no effect on radiolabeled PCK3145 uptake, laminin (lam) and cold (PCK) were both effective in decreasing that uptake (Fig. 6B). Intriguingly, the native PSP-94 protein (e.g., SEQ ID N0.:1; PSP) only partially inhibited the PCK3145 uptake.
This may potentially be due to incorrect or non-optimal folding of the native protein in solution.
Finally, a second set of competitors was also used to compete with the potential PCK3145 cell surface receptor.
Recent published evidence suggests that the laminin receptor binds the green tea catechin EGCg (Nat Struct Mol Biol. (2004) 11:380-381 ). EGCg was therefore used in uptake competition experiments. These uptake experiments were also performed at 37°C. Results of this experiment indicate that both laminin and EGCg, significantly S antagonized the PCK3145 uptake (Fig. 6C). EGC, which is a catechin found in green tea but that lacks the gallate moiety, failed to compete with PCK3145. As an inhibitory effect of EGCg adhesion of murine melanoma cells to laminin has been observed, a similar effect of PCK3145 is likely to occur (Nat. Struct. Mol. Biol. 2004, 11:380-381 ).
PCK3145 binds to the cell surtace of HT-1080 cells Binding (and internalisation) of iodinated-PCK3145 to the cell surface of cancer cells has been demonstrated herein. An assay has been designed to monitor such binding 1 S to the cell surface with the use of flow cytometry (FACS).
Fluoresceinisothiocyanate (FITC) is currently the most commonly-used fluorescent dye for FACS analysis and was conjugated to the N-terminus of PCK3145. This assay enables to visualize cell binding of FITC-PCK3145 through the shift in fluorescence associated with cells that bind to it. 80-90% confluente HT-1080 cells were trypsinized and counted.
Labeling 24 was performed on 10g cells for 1 hr at 4°C. FITC-PCK3145 effectively bound to the cell surface in a dose-dependent manner with a plateau reached around 10 ~g/ml (Fig 7A). More importantly, FITC-PCK3145 (10 ~g/ml) cell surface binding was substantially inhibited by the incubation of excess 30 p,g/ml laminin-1 (Fig 7B). This latter observation supports that a common cell surface receptor or that some laminin-2S binding activity is shared between PCK3145 and laminin and may trigger the subsequent signaling by PCK3145.
It is to be understood herein that any other markers may be attached to (e.g., biotin, etc.). When a FACS analysis is to be performed it is useful to use a 30 fluorescent marker.
2$
Laminin and laminin-derived peptide SIKVAV antagonize PCK3145 inhibitory action on MMP-9 secretion ' In order to confirm the molecular mechanism involved in PCK3145 inhibitory action on MMP-9 secretion, HT-1080 cells were incubated with either the native laminin-1 protein (Fig 8A, 8B), or with a laminin-1-derived peptide SIKVAV known for its capacity to induce MMP-9 secretion [Freitas et al., (2004) Oral Oncology 40:483-489].
Confluent serum-starved cells were treated with these agents in the presence or not of 300 wg/ml PCK3145 for 24 hours. Conditioned media was isolated and gelatin zymography performed to monitor the extent of MMP-9 extracellular levels.
Results show that PCK3145 is able to inhibit by 50% MMP-9 extracellular levels, while laminin antagonized PCK3145 inhibitory action. Interestingly, SIKVAV-induced MMP-9 secretion was also antagonized by PCK3145 (Fig 8A, 8B). This result also strongly support that laminin and laminin-derived peptides interfere with PCK3145 actions and therefore share common cell surface receptor(s).
PCK3145 triggers rapid intracellular ERK phosphorylation As illustrated in Fig. 9A and 9B, PCK3145 has the capacity to trigger ERK
(Extracellular-signal-Regulated protein Kinases) phosphorylation. A time-course/dose-response experiment was performed. Overnight serum-starved quiescent HT-1080 cells were incubated with vehicle (phosphate-buffered saline (PBS) pH 7.4) or PCK3145 (3-100 pg/ml) for 1, 2 or 5 minutes at 37°C. The cells were scraped from the culture dishes in PBS containing NaF/Na3V04 and incubated in the same medium buffer for 1 h at 4°C. The resulting lysates were further clarified by centrifugation.
Western blotting and immunodetection using anti-phosphoERK and anti-ERK
antibodies was then performed.
The results show that PCK3145 was able to promote ERK phosphorylation as soon as in 1 minute of incubation and maximally at a concentration of 3 pg/ml (Fig 9A) while total ERK levels remained unaffected. Determination of the capacity of laminin-derived peptide SIKVAV to inhibit PCK3145-induced ERK phosphorylation was evaluated. Cells were thus similarly as above treated with either PCK3145, SIKVAV, or an equimolar combination of both and ERK phosphorylation monitored at 1 minute of incubation. While SIKVAV had virtually no effect on ERK phosphorylation, it significantly antagonized that ERK phosphorylation triggered by PCK3145 at 1 and 3 p,g/ml (Fig 9B).
These results indicate that PCK3145 mediates cellular events in a manner which is faster than expected and also that the biological effect is observed at a low dose.
These results indicate that PCK1345 may be administered in humans at a lower dose than previously demonstrated and still it will be sufficient to cause a desired biological effect. These results have an impact in the administration scheme (dose, time of administration, etc.) of the drug (PCK3145).
HT-1080 cells adhere to PCK3145-coated dishes through the 67-kDa laminin receptor As shown above, the overexpression of the recombinant 67-kDa laminin receptor is able to sustain PCK-induced ERK phosphorylation. A cell adhesion assay was designed where increasing concentrations of PCK3145 were coated on dishes and cells subsequently incubated. This coating may be performed for either 1 hour at 37°C
or overnight at 4°C. Blocking with albumin was avoided due to a potential interaction between PCK3145 and albumin (see below). Confluent HT-1080 cells were trypsinised, seeded onto the PCK3145-coated dishes, and adhesion left to proceed for 1 hour at 37°C. Results show that cells adhered with more avidity to increasing doses of PCK3145 (Fig 10A). When the 67-kDa laminin receptor cDNA was transiently transfected into HT-1080 cells, adhesion to PCK3145 was then found increased in comparison to mock cells (Fig 10B).
These results further evidence laminin binding activities to PCK3145 actions.
Noteworthy is the fact that, in the setting of these experimental conditions, it was noticed that cell confluence regulates the laminin receptor protein expression (Fig 10C). Indeed, it was observed that the laminin receptor was expressed at very low levels in low (104 cells / well) density, while its expression drastically increased at high (106 cells / well). This effect was also observed when cells were harvested at different time of incubation (from 24 to 78 hours).
Potential PCK3145-binding proteins revealed by affinity-gel chromatography In order to identify potential PCK3145-binding proteins, an affinity chromatography assay was designed in which PCK3145 was coupled to activated Sepharose-beads.
Cell lysates were then overlaid onto the respective gels and columns washed extensively to minimize non-specific protein binding. Three independent coupling were performed. It was systematically observed that proteins at approximately MW of 58, 47, and 35 kDa were differentially bound to PCK3145-coupled gels (Fig 11A). The corresponding PVDF membranes were cut and sent for protein sequencing. The identity of two of these three PCK-binding candidates was found to be Albumin (Fig 11 B) and enolase (Fig 11 C). However, it is tempting to suggest that i) Albumin may interact with PCK3145 and act as a carrier protein (bovine serum albumin and human serum albumin share conserved regions) and that ii) PCK3145 may interact with a cell surface enolase which is known to possess both laminin and plasminogen binding activities.
Enolase inhibits cell adhesion to PCK3145 The identification of enolase as a potential PCK3145-binding protein is supported by its recently published ability to also bind to laminin [Carneiro et al. (2004) Microbes Infect. 6:604-608]. !n order to provide evidence of a potential role of enolase in PCK3145 effects, a test of cell adhesion to 10 ug/ml PCK3145-coated dished was performed. Cell adhesion was performed for 2 hours at 37°C in the presence or not of 30 ~g/ml enolase or with 30 pM EGCg, a green tea catechin that we have been shown herein to both inhibit MMP secretion and PCK3145 internalization. These results indicate that both enolase and EGCg inhibit cell adhesion to PCK3145-coated dishes (Fig 12A). Although, only very little inhibition (-12%) was observed when cell surface binding of FITC-PCK3145 was assessed by flow cytometry (Fig 12B).
Far-Western ligand binding assay Far-Western is a proteomic approach aimed at identifying potential protein-protein interactions using elctrotransferred proteins onto PVDF membranes. Cell lysates were run on a 7.5% or 12% SDS-gels and transferred to PVDF membranes. Membranes were then blocked with either BSA or powder milk. Binding was then performed with biotinilated-laminin-1 overnight at 4°C. Biotinilated-laminin was previously monitored for its ability to bind HT-1080 cell surface and to be functionally inhibited by excess unlabelled laminin, PCK3145, or EGCg (Fig 13A). We show that both laminin and PCK3145 were significantly able to inhibit the binding of biotinilated-Laminin (~20%
inhibition), while 30 ~M EGCg was extremely potent to inhibit biotinilated-laminin binding. Furthermore, biotinilated-laminin was able to bind to electrotransferred proteins as shown by the detection using either streptavidin-HRP or an anti-biotin antibody method (Fig 13B). Interestingly, when the 47 kDa commercially available enolase was run on the 12% SDS-gel it was also specifically recognized by the biotinilated-laminin.
PCK3145 inhibits HuR gene and protein expression Recent articles indicate that MMP-9 expression to be induced through a stabilizing nuclear factor HuR [Huwiler et al. (2003) J Biol Chem. 278:51748-69J, and that a3b1 integrin (an integrin known to bind laminin) regulates MMP-9 mRNA [Lyer et al., (2005) J Celi Science 118:1185-1195]. These published evidence link Hur, an mRNA
stabilizing factor that is ubiquitously expressed and that has the ability to bind and stabilize mRNA degradation to AU-rich elements (AREs). These elements are expressed in the 3'-untranslated region of several RNAs encoding, for instance, VEGF
and MMP-9. Whether PCK3145 may regulate HuR expression was therefore tested.
Serum-starved cells were treated or not with 300 ~,g/ml PCK3145 for 24 hours in the presence or not of laminin or SIKVAV, and cells harvested for either RNA
extraction or cell homogenates. RT-PCR with specific primers revealed that HuR gene expression was downregulated by PCK3145 and that both laminin and laminin-derived peptide SIKVAV antagonized PCK3145's inhibitory effect (Fig 14). This was further confirmed independently with specific anti-HuR antibody and immunodetection. This effect of PCK3145 on HuR may explain partly the inhibition of MMP-9 expression and subsequent diminished extracellular levels.
PCK3145 triggers CD44 cell surface shedding and inhibits MMP-9 docking at the cell surface Decreased cell migration and adhesion on HA was observed when cells were pretreated with PCK3145 (data not shown). It was shown that this was the results of an increased CD44 cell surface shedding as demonstrated by a strong immunoreactive band observed in the cells which had been pre-treated with PCK3145.
This effect was also shown to happen in parallel with MT1-MMP-transfected cells.
Interestingly, an increase in MT1-MMP expression in the PCK3145-treated cells was shown which may partially explain how PCK may lead to CD44 shedding. The potential implication of these observations on MMP-9 cell surface binding was investigated, since CD44 is also reported to be the docking receptor for MMP-9. HT-1080 cells were treated or not with 300 pg/ml PCK3145 for 24 hours, trypsinised and either labelled with anti-CD44 or anti-MMP-9 antibodies. Flow cytometry measurements clearly show a 25% downregulation in CD44 cell surface expression that is correlated to a 50% inhibition of cell surface-associated MMP-9 (Fig 15).
Altogether, these observations provide a rational for an additional regulation of MMP-9 functions (inhibition of secretion being the first one) by PCK3145 of diminished cell surface docking of MMP-9 to CD44 which may control both ECM degradation and cell migration by MMP-9.
PCK3145 inhibits extracellular matrix (ECM) degradation by MMP-9; a matrix metalloproteinase involved in prostate cancer progression and several other conditions such as, for example, angiogenesis, wound healing, etc. While PCK3145 did not affect MMP-9 enzymatic activity per se, it however significantly reduces its (type-I
collagen-induced) gene expression which, consequently, led to decreased extracellular MMP-9 secreted levels.
Although most published studies have focused on transcriptional control of MMP-9, there is increasing evidence that its expression can also be regulated at the steps of mRNA stability, translation and protein secretion. The ability to modulate MMP-expression at multiple steps through distinct signaling pathways may be particularly important during malignant conversion and metastasis, when tumor cells need to induce or maintain MMP-9 levels in response to changing environmental cues.
The therapeutic effect of PCK3145 on the inhibition of leukemia cell growth was evaluated. Human leukemia cells RPMI-8226 and SR (available at the National Cancer Institute (http://www.dtp.nci.nih.gov/branches/btb/services.html)) were incubated with PCK3145 and cell growth was monitored. Results are expressed in Table 2 below.
Log 10 concentration time Mean optical densities Percent Growth zero Ctrl -1.9 -0.9 0.1 1.1 2.1 -1.9 - 0.9 0.1 1.1 2.1 GI50 TGI LC50 Leukemia RPMI-8226 0.367 0.557 0.501 0.522 0.413 0.357 0.279 71 82 24 -3 -24 4.44 9.80 > 1.25 E2 SR 0.309 0.965 0.956 0.909 0.861 0.526 0.451 99 92 84 33 22 5.83 >1.25 > 1.25 Table 2.
Cell surface laminin binding activities as primary targets for PCK3145.
The novel mechanism of laminin receptor-mediated MMP-9 gene expression provides solid foundation to suggest that PCK3145 acts through receptor-mediated signalling. Several lines of evidence indeed show that PCK3145 targets laminin binding activities (including MMP-9 regulation);
1. FITC-labelled PCK3145 effectively binds to the cell surface, and that this binding is inhibited by either laminin-1 or a laminin-1-derived peptide (SIKVAV) 2. EGCg, a green tea catechin that inhibits MMP-9 secretion, is also a laminin receptor ligand that antagonized cell binding to PCK3145 3. Overexpression of the 67-kDa non-integrin laminin receptor in cells promotes binding/recognition to PCK3145 4. PCK3145-affinity chromatography as identified enolase, an enzyme recently thought to also possess laminin-binding properties, and which have been shown herein to inhibit cell binding to PCK3145.
Increased expression of the 67-kDa laminin receptor has been reported in a variety of human carcinomas (colon, breast, stomach, liver, and ovary) and directly correlates with a higher proliferation rate of malignant cells and tendency to metastasize. In addition, the 67-kDa laminin receptor is detectable in anaplastic large cell lymphomas and in small subsets of high-grade B-cell non-Hodgkin's or Hodgkin's lymphomas.
More recently, expression of the 67-kDa laminin receptor has been found to mediate acute myeloid leukemia cell adhesion to laminin and to be frequently associated with monocytic differentiation. In light of these documented expression of the 67-kDa laminin receptor and in light of the results presented herein, it is thus tempting to conclude that cancer (e,g., of lymphoid or monocytic origin, etc.) other than prostate cancer, or specific stage of development such as in monocytic-oriented acute myeloid leukemia may be targeted by PCK3145.
PCK3145 triggers intracellular signalling that regulates HuR expression.
The unexpected observation that PCK3145 shares, to some extent, homology with different structural chains of laminin suggests that it may indeed also share the same cell surface receptor. The results disclosed herein support this suggestion.
Indeed, laminin and PCK3145 competed for ERK phosphorylation as well as for the binding/uptake of PCK3145. It was shown herein that intracellular signalling leads to MMP-9 decreased secretion and that HuR, a MMP-9 mRNA stabilizing factor, is targeted by PCK3145. Indeed, both of HuR gene and protein expression were downregulated by PCK3145, and this dowregulation was reversed by laminin receptor ligands. PCK3145 is therefore a laminin receptor-mediated signal transduction inhibitor.
As HuR also binds to the AU-rich elements of RNAs encoding genes for cytokines, growth factors, tumor suppressor genes, proto-oncogene, and cell cycle regulators, one can envisioned that downregulation of HuR by PCK3145 inhibits several cellular processes and may therefore be used to treat several diseases associated with HuR
expression.
Fig. 16 is a schematic summarizing the effect of PCK on its target and the biological event and signaling event occuring thereafter.
$ The content of each publication, patent and patent application mentioned in the present application is incorporated herein by reference.
Although the present invention has been described in details herein and illustrated in the accompanying drawings, it is to be understood that the invention is not limited to the embodiments described herein and that various changes and modifications may be effected without departing from the scope or spirit of the present invention.
1$ sss ~scx=r~r=o~r: saQ =n wo: i Ser Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser 2$
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Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser S
Val Ser Glu Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID NO: 3:
Tyr Thr Cys Ser Val Ser Glu Pro Gly Ile SEQUENCE DESCRIPTION: SEQ ID NO: 4:
Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu SEQUENCE DESCRIPTION: 8EQ ID NO: 5:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SSQ ID NO: 6:
Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu 3S Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID NO: 7 (an acetylaminomethyl group may be attached to the sulfur atom of cysteine 7, of cysteine 10 and/or of cysteine 12) 4S Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SO SEQUENCE DESCRIPTION: SEQ ID NO: 8:
SS
SEQUENCE DESCRIPTIONS SEQ ID NO: 9:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu SEQUENCE DESCRIPTION: SEQ ID NO: 10:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile SEQUENCE DESCRIPTION: SEQ ID NO: 11:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser SEQUENCE DESCRIPTION: SEQ ID NO: 12:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys SEQUENCE DESCRIPTION: SEQ ID NO: 13:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys SEQUENCE DESCRIPTION: SEQ ID NO: 14:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr SEQUENCE DESCRIPTION: SEQ ID NO: 15:
$0 Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu SEQUENCE DESCRIPTION: SEQ ID NO: 16:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val SEQUENCE DESCRIPTION: SEQ ID NO: 17:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser SEQDENCE DESCRIPTION: SEQ ID NO: 18:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr sEQvBNCE DESCRIPTION: sEQ ID No: 1s:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro SEQ~BNCE DESCRIPTION: SEQ ID NO: Z0:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val SEQUENCE DESCRIPTION: SEQ ID N0: al:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly SBQUSNCS DSSCRIBTION: SEQ ID N0: Z2:
SO Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr SEQUENCE DESCRIBTION: SEQ ID NOs Z3:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp SEQUSNCE DESCRIBTION: SEQ ID NO: 24:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys SEQUENCE DESCRIPTION: SEQ ID NO: a5:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp SEQUENCE DESCRIPTION: SEQ ID NO: 26:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn sEQvENCE DESCRI~rxoN: sEQ ID No: a~:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys SEQUENCE DESCRIPTION: SEQ ID NO: 28:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln SEQUENCE DESCRIPTION: SEQ ID NO: 29:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg SEQUENCE DESCRIPTION: SEQ ID NO: 30:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile SEQUENCE DESCRIPTION: SEQ ID NOs 31:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe sEQvENCE DESCRIPTION: sEQ Ia No: 3a:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys SEQUENCE DESCRIPTION: SEQ ID NO: 33:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp 4S Asn Cys Gln Arg Ile Phe Lys Lys SEQUENCE DESCRIPTION: SEQ ID NO: 34:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu SEQUENCE DESCRIPTION: SEQ ID NO: 35:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu $
Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp SEQUENCE 36:
DESCRIPTION:
SEQ ID
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1$ Glu Trp GlnThrAsp Asn Glu ThrCys Thr Cys Tyr Glu Cys Thr Glu Ile Ser CysCysThr Leu Ser ThrPro Val Gly Tyr Asp Val Lys Asp Asn Cys GlnArgIle Phe Lys GluAsp Cys Lys 2$
SEQUENCE DESCRIPTION: SEQ ID NO: 39:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys 3$ 35 40 SEQUENCE DESCRIPTION: SEQ ID NOs 38:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu 4$ Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr $0 SEQDSNCE DESCRIPTION: 39:
SEQ ID NO:
Glu Trp Gln ThrAsp Asn Glu Thr Cys Cys Tyr Glu Thr Cys Thr Glu $$
Ile Ser Cys CysThr Leu Ser Thr Pro Gly Tyr Asp Lys Val Val Asp Asn Cys Gln ArgIle Phe Lys Glu Asp Lys Tyr Ile Lys Cys saQosNCS 40:
a$scRI~rIONs sEQ Ia No:
Glu Trp Gln Asp Asn Cys Thr Thr Cys Glu Thr Thr Glu Cys Tyr Glu S
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DESCRIPTION:
SEQ
ID
NO:
Glu Trp Gln Asp Asn Glu Thr Thr Cys Glu Thr Thr Cys Cys Tyr Glu Ile Ser Cys Thr Leu Ser Thr Val Gly Asp Lys Cys Val Pro Tyr Asp Asn Cys Gln Ile Phe Lys Glu Cys Lys Ile Val Arg Lys Asp Tyr Val SEQUENCE 42:
DBSCRIPTIONs SEQ
ID
NO:
ZS Glu Trp Thr Asp Asn Glu Thr Thr Cys Glu Thr Gln Cys Cys Tyr Glu Ile Ser Cys Thr Leu Ser Thr Val Gly Asp Lys Cys Val Pro Tyr Asp Asn Cys Arg Ile Phe Lys Glu Cys Lys Ile Val Gln Lys Asp Tyr Val Glu SEQDSNC3 DESCRIPTION: SEQ ID NO: d3:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys SO
SEQUENCE DESCRIPTION: SEQ ID NO: 44:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu SS
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Glu Trp GlnThrAsp Asn Glu ThrCysThr Cys Tyr Thr Cys Glu Glu Ile Ser CysCysThr Leu Ser ThrProVal Gly Tyr Lys Val Asp Asp Asn Cys GlnArgIle Phe Lys GluAspCys Lys Tyr Val Lys Ile Val Glu Lys LysAspPro s$Qv$NCE aasCRI~rION: saQ ID No: 4~:
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Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu $$ Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys SEQUENCE DESCRIpTIONs SEQ ID NOs 49:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr SEQDENCB DESCRIPTION: S8Q ID NO: 50:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val 30 Glu Lys Lys Asp Pro Lys Lys Thr Cys SEQUENCE DESCRIPTION: SEQ ID N0: 51:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val VaI
Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser SEQO'BNCE DESCRIPTION: S8Q ID NO: 52:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val SEQUENCE DESCRIPTION: SEQ ID N0: 53:
GIu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr GIu Thr Glu $ 1 5 10 15 Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser sEQvsNCE assCRIPTION: SEQ Ia NO: 54:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu 88QUENCE DESCRIPTION: SEQ ID NO: 55:
Glu Trp GlnThrAsp AsnCys GluThrCys ThrCysTyr Glu Thr Glu Ile Ser CysCysThr LeuVal SerThrPro ValGlyTyr Asp Lys Asp Asn Cys GlnArgIle PheLys LysGluAsp CysLysTyr Ile Val Val Glu Lys LysAspPro LysLys ThrCysSer ValSerGlu Trp SEQt~NCB DESCRIBTION: SEQ ID NO: 56:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp $S Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu Trp Ile SEQUENCE DESCRIPTION: SEQ ID NO: 57:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu S
Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID N0: 58:
Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SBQUSNC$ DESCRIPTION: $EQ ID N0: 59:
Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUBNCE DESCRIPTION: SEQ ID NO: 60:
Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 61:
Pro Ile Asn Ser Glu Trp GIn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 4S SEQUENCE DESCRIPTION: SEQ ID NO: 6Z:
His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr S0 Cys Tyr Glu Thr SS
SEQvsNCE DsscRI~rION: ssQ ID No: s3:
Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys S
Thr Cys Tyr Glu Thr SEQZJSNCE DESCRIPTION: SEQ ID NOs 64:
Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr IS SBQjJENCE DESCRIPTION: SEQ ID NOs 65:
Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu 20 Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 66:
Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQpENCE DESCRIPTION: SEQ ID NO: 67:
3S Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQTJENCE DESCRIPTION: SEQ ID NOs 68:
Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SO SEQV8NCE DESCRIPTION: SEQ ID NO: 69:
Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr SS Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NOs 70:
Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NO: 71:
Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp IS Gln Thr Asp A~On Cys Glu Thr Cys 25r Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 72:
Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 73:
Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser 3~ 1 5 10 15 Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 74:
Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 4S SEQUFNCE DESCRIPTION: SEQ ID NOs 75:
Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile S0 Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SS SEQZ1ENCE DESCRIPTION: SEQ ID NOs 76:
Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 77:
Pro Gly Asp Ser~Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQDENCE DESCRIPTION: SEQ ID NOs 78:
20 Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID N0: 79:
Gly Val ProGlyAsp SerThr ArgLys CysMetAspLeu LysGlyAsn Lys His ProIleAsn SerGlu TrpGln ThrAspAsnCys GluThrCys Thr Cys TyrGluThr SEQUENCE 80:
DESCRIB'1'ION:
ID
NO:
Glu Gly ValProGly AspSer ThrArg LysCysMetAsp LeuLysGly Asn Lys HisProIle AsnSer GluTrp GlnThrAspAsn CysGluThr Cys Thr CysTyrGlu Thr S~ SEQUENCE DESCRIhTION: SEQ ID NO: 81:
Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Sex Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 82:
$ Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 83:
Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 84:
Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NO: 85:
Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 86:
Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQvBNCS D$SCRIPTIOD1: SSQ ID NO: 89:
Ser Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro IIe Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr INirORI~ATION S8a ID L~s 88:
FOR
IS (i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 15 (B) TYPE: AMINO ACID
(C) STRANDEDNESS: SINGLE
(D) TOPOLOGY: LINEAR
ZO (ii) MOLECULE TYPE:
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 1 OTHER INFORMATION : The residue his position in t is 2S either glutamic acid, asparagine,aspartic acid.
or (ix) FEATURE
NAME/KEY : Modified site LOCATION : 4 (D)OTHER INFORMATION : The residuethis position in 30 is either threonine, or serine.
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 6 (D)OTHER INFORMATION : The residuethis position in 35 is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 8 4O (D)OTHER INFORMATION : The residuethis position in is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
NAME/KEY : Modified site 4S LOCATION : 9 (D)OTHER INFORMATION : The residuethis position in is either threonine, or serine.
(ix) FEATURE
NAME/KEY : Modified site SO (B)LOCATION : 11 (D)OTHER INFORMATION : The residuethis position in is either threonine, or serine.
(ix) FEATURE
(A)NAME/KEY : Modified site SS (B)LOCATION : 13 (D)OTHER INFORMATION : The residuethis position in is either tyrosine, or phenylalanine.
(ix) FEATURE
NAME/KEY : Modified site 6O (B)LOCATION : 14 (D)OTHER INFORMATION : The residuethis position in is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
fiS (A)NAME/KEY : Modified site (B)LOCATION : 15 (D)OTHER INFORMATION : The residue in this position is either threonine, or serine.
(vi)ORIGINAL SOURCE:
S (A) ORGANISM:
(xi) SEQUENCE DESCRIPTION: SEQ ID N0: 88:
Xaa Trp Gln Xaa Asp Xaa Cys Xaa Xaa Cys Xaa Cys Xaa Xaa Xaa SEQUENCE DESCRIPTION: SEQ ID N0: 89:
IS Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 90:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 91:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln ThrAspAsn Cys ThrCysThr Tyr Glu Thr Glu Glu Cys Trp Gln Thr AspAsnCys Glu CysThrCys Glu Thr Glu Trp Thr Tyr Gln Thr Asp AsnCysGlu Thr ThrCysTyr Thr Cys Glu SEQUENCE DESCRIPTION: SEQ ID NO: 92:
SO Glu Tyr Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr S
sBQt~Ca DESCRIPTION: SaQ ID NO: 93:
Glu Trp Asn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SaQvENCa DaSCRIPTION: SEQ ID NO: 94:
Glu Trp Gln Thr Asp Gln Ser GIu Thr Cys Thr Cys Tyr Asp Thr SaQtJBNCE DaSCRIPTION: 88Q ID NO: 95:
Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 1S S8QU8NC8 DaSCRIPTION: SaQ ID NO: 96:
Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr sEQvErrca DascRIPTION: saQ ID No: 9~:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys SEQDaNCa DESCRIPTIONS SEQ ID NO: 98:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys D-Tyr Glu Thr SEQVSNCB DESCRIPTION: SEQ ID NO: 99 (scarmbled neptids):
Thr-Cys(Acm)-Glu-Asn-Cys(Acm)-Thr-Glu-Thr-Gln-Trp-Cys(Acm)-Glu-Thr-Asp-Tyr
Therefore, any polypeptide having a modification compared to an original polypeptide (e.g., PSP94, PCK3145) which does not destroy significantly a desired biological activity is encompassed herein. It is well known in the art, that a number of modifications may be made to the polypeptides of the present invention without deleteriously affecting their biological activity. These modifications may, on the other hand, keep or increase the biological activity of the original polypeptide or may optimize one or more of the particularity (e.g. stability, bioavailability, etc.) of the polypeptides of the present invention which, in some instance might be desirable.
Polypeptides of the present invention comprises for example, those containing amino acid sequences modified either by natural processes, such as posttranslational processing, or by chemical modification techniques which are known in the art.
Modifications may occur anywhere in a polypeptide including the polypeptide backbone, the amino acid side-chains and the amino- or carboxy-terminus. It will be appreciated that the same type of modification may be present in the same or varying degrees at several sites in a given polypeptide. Also, a given polypeptide may contain many types of modifications. Polypeptides may be branched as a result of ubiquitination, and they may be cyclic, with or without branching. Cyclic, branched and branched cyclic polypeptides may result from posttranslational natural processes or may be made by synthetic methods. Modifications comprise for example, without limitation, pegylation, acetylation, acylation, addition of acetomidomethyl (Acm) group, ADP-ribosylation, alkylation, amidation, biotinylation, carbamoylation, carboxyethylation, esterification, covalent attachment to fiavin, covalent attachment to a heme moiety, covalent attachment of a nucleotide or nucleotide derivative, covalent attachment of drug, covalent attachment of a marker (e.g., fluorescent, radioactive, etc.), covalent attachment of a lipid or lipid derivative, covalent attachment of phosphatidylinositol, cross-linking, cyclization, disulfide bond formation, demethylation, formation of covalent cross-links, formation of cystine, formation of pyroglutamate, formylation, gamma-carboxylation, glycosylation, GPI anchor formation, hydroxylation, iodination, methylation, myristoylation, oxidation, proteolytic processing, phosphorylation, prenylation, racemization, selenoylation, sulfation, transfer-RNA
mediated addition of amino acids to proteins such as arginylation and ubiquitination, etc. It is to be understood herein that more than one modification to the polypeptides described herein are encompassed by the present invention to the extent that the biological activity is similar to the original (parent) polypeptide.
As discussed above, polypeptide modification may comprise, for example, amino acid insertion (i.e., addition), deletion and substitution (i.e., replacement), either conservative or non-conservative (e.g., D-amino acids, desamino acids) in the polypeptide sequence where such changes do not substantially alter the overall biological activity of the polypeptide which is, for example, to reduce the level of expression of matrix metalloproteinases or pro-matrix metalloproteinases and/or to reduce their enzymatic activity.
Example of substitutions may be those, which are conservative (i.e., wherein a residue is replaced by another of the same general type or group) or when wanted, non-conservative (i.e., wherein a residue is replaced by an amino acid of another type). In addition, a non-naturally occurring amino acid may substitute for a naturally occurring amino acid (i.e., non-naturally occurring conservative amino acid substitution or a non-naturally occurring non-conservative amino acid substitution).
As is understood, naturally occurring amino acids may be sub-classified as acidic, basic, neutral and polar, or neutral and non-polar. Furthermore, three of the encoded amino acids are aromatic. It may be of use that encoded polypeptides differing from the determined polypeptide of the present invention contain substituted codons for amino acids, which are from the same type or group as that of the amino acid be replaced. Thus, in some cases, the basic amino acids Lys, Arg and His may be interchangeable; the acidic amino acids Asp and Glu may be interchangeable;
the neutral polar amino acids Ser, Thr, Cys, Gln, and Asn may be interchangeable;
the non-polar aliphatic amino acids Gly, Ala, Val, Ile, and Leu are interchangeable but because of size Gly and Ala are more closely related and Val, Ile and Leu are more closely related to each other, and the aromatic amino acids Phe, Trp and Tyr may be interchangeable.
It should be further noted that if the polypeptides are made synthetically, substitutions by amino acids, which are not naturally encoded by DNA (non-naturally occurring or unnatural amino acid) may also be made.
A non-naturally occurring amino acid is to be understood herein as an amino acid which is not naturally produced or found in a mammal. A non-naturally occurring amino acid comprises a D-amino acid, an amino acid having an acetylaminomethyl group attached to a sulfur atom of a cysteine, a pegylated amino acid, etc.
The inclusion of a non-naturally occurring amino acid in a defined polypeptide sequence will therefore generate a derivative of the original polypeptide. Non-naturally occurring amino acids (residues) include also the omega amino acids of the formula NH2(CH2)nCOOH wherein n is 2-6, neutral nonpolar amino acids, such as sarcosine, t butyl alanine, t-butyl glycine, N-methyl isoleucine, norleucine, etc.
Phenylglycine may substitute for Trp, Tyr or Phe; citrulline and methionine sulfoxide are neutral nonpolar, cysteic acid is acidic, and ornithine is basic. Proline may be substituted with hydroxyproline and retain the conformation conferring properties.
It is known in the art that analogues may be generated by substitutional mutagenesis and retain the biological activity of the polypeptides of the present invention. These analogues have at least one amino acid residue in the protein molecule removed and 1 S a different residue inserted in its place. For example, one site of interest for substitutional mutagenesis may include but are not restricted to sites identified as the active site(s), or immunological site(s). Other sites of interest may be those, for example, in which particular residues obtained from various species are identical.
These positions may be important for biological activity. Examples of substitutions identified as "conservative substitutions" are shown in table 1. If such substitutions result in a change not desired, then other type of substitutions, denominated "exemplary substitutions" in table 1, or as further described herein in reference to amino acid classes, are introduced and the products screened.
In some cases it may be of interest to modify the biological activity of a polypeptide by amino acid substitution, insertion, or deletion. For example, modification of a polypeptide may result in an increase in the polypeptide's biological activity, may modulate its toxicity, may result in changes in bioavailability or in stability, or may modulate its immunological activity or immunological identity. Substantial modifications in function or immunological identity are accomplished by selecting substitutions that differ significantly in their effect on maintaining (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation. (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain. Naturally occurring residues are divided into groups based on common side chain properties:
(1 ) hydrophobic: norleucine, methionine (Met), Alanine (Ala), Valine (Val), Leucine (Leu), Isoleucine (11e) (2) neutral hydrophilic: Cysteine (Cys), Serine (Ser), Threonine (Thr) (3) acidic: Aspartic acid (Asp), Glutamic acid (Glu) (4) basic: Asparagine (Asn), Glutamine (Gln), Histidine (His), Lysine (Lys), Arginine (Arg) (5) residues that influence chain orientation: Glycine (Gly), Proline (Pro);
and aromatic: Tryptophan (Trp), Tyrosine (Tyr), Phenylalanine (Phe) Non-conservative substitutions will entail exchanging a member of one of these classes for another.
TABLE 1, amino acid substitution Original residueExemplary substitutionConservative substitution ~
Ala (A) Val, Leu, Ile Val Arg (R) Lys, Gln, Asn Lys Asn (N) Gln, His, Lys, Arg Gln Asp (D) Glu Glu Cys (C) Ser Ser Gln (Q) Asn Asn Glu (E) Asp Asp Gly (G) Pro Pro His (H) Asn, Gln, Lys, Arg Arg Ile (I) Leu, Val, Met, Ala,Leu Phe, norleucine Leu (L) Norleucine, Ile, Ile Val, Met, Ala, Phe Lys (K) Arg, Gln, Asn Arg Met (M) Leu, Phe, Ile Leu Phe (F) Leu, Val, Ile, Ala Leu Pro (P) Gly Gly Ser (S) Thr Thr Thr (T) Ser Ser Trp (V1/) Tyr Tyr Tyr (Y) Trp, Phe, Thr, Ser Phe Val (V) Ile, Leu, Met, Phe,Leu Ala, norleucine Example of biologically active analogues of PCK3145 (SEQ ID NO: 5) exemplified by amino acid substitutions is illustrated below.
Position 1 5 10 15 (SEQ ID
X, W Q X2 D X, C X1 X2 C X2 C X3 X, X2 N0.:88) For example, X~ may be glutamic acid (i.e., glutamate) (Glu), aspartic acid (aspartate) (Asp), or asparagine (Asn), X2 may be threonine (Thr) or serine (Ser) and X3 may be tyrosine (Tyr) or phenylalanine (Phe). Any replacement of an original residue in SEQ
ID N0.:5 with a conserved amino acid (i.e. conservative substitution) is encompassed by the present invention. , Another example of a PCK3145 (SEQ ID NO: 5) analogue may include, for example, a polypeptide as exemplified in SEQ ID N0.:88 or any other polypeptide having at least one conservative amino acid substitution (illustrated in bold below) as defined in Table 1 S 1, such as, for example;
Glu Tyr Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:92) Glu Trp Asn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:93) Glu Trp Gln Thr Asp Gln Ser Glu Thr Cys Thr Cys Tyr Asp Thr (SEQ ID N0.:94) Examples of a PCK3145 (SEQ ID NO: 5) derivative may include, for example, a polypeptide having an addition in one or both of the terminal region (amino-terminal or carboxy-terminal) as illustrated in SEQ IDs No.: 9 to 87, a peptide having a stabilizing group such as exemplified in SEQ ID N0.:7, or a peptide having one or more repeats of SEQ ID No.:5 such as exemplified in SEQ ID NOs.: 89 to 91, a polypeptide having at least one D-amino acid as exemplified in SEQ ID No. 98 and combination thereof.
An example of a PCK3145 (SEQ ID NO: 5) fragment may include, for example, a polypeptide having a truncation in one or both of the terminal regions (amino-terminal or carboxy-terminal) as illustrated below.
Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:95) Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr (SEQ ID N0.:96) Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys (SEQ ID N0.:97) Polypeptides may be either naturally occurring (that is to say, substantially purified or isolated from a natural source) or synthetic (for example, by performing site-directed mutagenesis on the encoding DNA or made by other synthetic methods such as chemical synthesis). It is thus apparent that the polypeptides of the invention can be either naturally occurring or recombinant (that is to say prepared from the recombinant DNA techniques) or made by chemical synthesis (e.g., organic synthesis).
As used herein, "pharmaceutical composition" means therapeutically effective amounts of the agent together with pharmaceutically acceptable diluents, preservatives, solubilizers, emulsifiers, adjuvant and/or carriers. A
"therapeutically effective amount" as used herein refers to that amount which provides a therapeutic effect for a given condition and administration regimen. Such compositions are liquids or lyophilized or otherwise dried formulations and include diluents of various buffer content (e.g., Tris-HCL, acetate, phosphate), pH and ionic strength, additives such as albumin or gelatin to prevent absorption to surfaces, detergents (e.g., Tween 20, Tween 80, Pluronic F68, bile acid salts). Solubilizing agents (e.g., glycerol, polyethylene glycerol), anti-oxidants (e.g., ascorbic acid, sodium metabisulfite), preservatives (e.g., thimerosal, benzyl alcohol, parabens), bulking substances or tonicity modifiers (e.g., lactose, mannitol), covalent attachment of polymers such as polyethylene glycol to the protein, complexation with metal ions, or incorporation of the material into or onto particulate preparations of polymeric compounds such as polylactic acid, polyglycolic acid, hydrogels, etc, or onto liposomes, microemulsions, micelles, unilamellar or multilamellar vesicles, erythrocyte ghosts, or spheroplasts.
Such compositions will influence the physical state, solubility, stability, rate of in vivo release, and rate of in vivo clearance. Controlled or sustained release compositions include formulation in lipophilic depots (e.g., fatty acids, waxes, oils).
Also comprehended by the invention are particulate compositions coated with polymers (e.g., poloxamers or poloxamines). Other embodiments of the compositions of the invention incorporate particulate forms protective coatings, protease inhibitors or permeation enhancers for various routes of administration, including parenteral, pulmonary, nasal, oral, vaginal, rectal routes. In one embodiment the pharmaceutical composition is administered parenterally, paracancerally, transmucosally, transdermally, intramuscularly, intravenously, intradermally, subcutaneously, intraperitonealy, intraventricularly, intracranially and intratumorally.
The formulations include those suitable for oral, rectal, ophthalmic, (including intravitreal or intracameral) nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous, intradermal, intratracheal, and epidural) administration. The formulations may conveniently be presented in unit dosage form and may be prepared by conventional pharmaceutical techniques. Such techniques include the step of bringing into association the active ingredient and the pharmaceutical carriers) or excipient(s). In general, the formulations are prepared by uniformly and intimately bringing into associate the active ingredient with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product.
Formulations of the present invention suitable for oral administration may be presented as discrete units such as capsules, cachets or tablets each containing a predetermined amount of the active ingredient; as a powder or granules; as a solution or a suspension in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water-in-oil emulsion and as a bolus, etc.
A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared by compressing, in a suitable machine, the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing agent. Molded tablets may be made by molding, in a suitable machine, a mixture of the powdered compound moistened with an inert liquid diluent.
The tablets may be optionally coated or scored and may be formulated so as to provide a slow or controlled release of the active ingredient therein.
Formulations suitable for topical administration in the mouth include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the ingredient to be administered in a suitable liquid carrier.
Formulations suitable for topical administration to the skin may be presented as ointments, creams, gels and pastes comprising the ingredient to be administered in a pharmaceutical acceptable carrier. An example of a topical delivery system is a transdermal patch containing the ingredient to be administered.
Formulations for rectal administration may be presented as a suppository with a suitable base comprising, for example, cocoa butter or a salicylate.
Formulations suitable for nasal administration, wherein the carrier is a solid, include a coarse powder having a particle size, for example, in the range of 20 to 500 microns which is administered in the manner in which snuff is administered, i.e., by rapid inhalation through the nasal passage from a container of the powder held close up to the nose. Suitable formulations, wherein the carrier is a liquid, for administration, as for example, a nasal spray or as nasal drops, include aqueous or oily solutions of the active ingredient.
Formulations suitable for vaginal administration may be presented as pessaries, tamports, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient;
and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze-dried (lyophilized) conditions requiring only the addition of the sterile liquid carrier, for example, water for injections, immediately prior to use.
Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets of the kind previously described.
Further, as used herein "pharmaceutically acceptable carrier" or "pharmaceutical carrier" are known in the art and include, but are not limited to, 0.01-0.1 M
or 0.05 M
phosphate buffer or 0.8 % saline. Additionally, such pharmaceutically acceptable carriers may be aqueous or non-aqueous solutions, suspensions, and emulsions.
Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate.
Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. Parenteral vehicles include sodium chloride solution, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's orfixed oils. Intravenous vehicles include fluid and nutrient replenishers, electrolyte replenishers such as those based on Ringer's dextrose, and the like.
Preservatives and other additives may also be present, such as, for example, antimicrobials, antioxidants, collating agents, inert gases and the like.
It is to be understood herein, that if a "range" or "group" of substances (e.g. amino acids), substituents" or the like is mentioned or if other types of a particular characteristic (e.g. temperature, pressure, chemical structure, time, etc.) is mentioned, the present invention relates to and explicitly incorporates herein each and every specific member and combination of sub-ranges or sub-groups therein whatsoever.
Thus, any specified range or group is to be understood as a shorthand way of referring to each and every member of a range or group individually as well as each and every possible sub-ranges or sub-groups encompassed therein; and similarly with respect to any sub-ranges or sub-groups therein. Thus, for example, with respect to a temperature greater than 100° C, this is to be understood as specifically incorporating herein each and every individual temperature state, as well as sub-range, above 100° C, such as for example 101 ° C, 105° C and up, 110° C and up, 115° C and up, 110 to 135° C, 115°
c to 135° C, 102° C to 150°
C, up to 210° C, etc.;
and similarly with respect to other parameters such as, concentrations, elements, etc...
It is in particular to be understood herein that the polypeptides of the present invention each include each and every individual polypeptide described thereby as well as each and every possible mutant, variant, homolog, analogue or else whether such mutant, variant, homolog, analogue or else is defined as positively including particular polypeptides, as excluding particular polypeptides or a combination thereof;
for example an exclusionary definition for a polypeptide analogue (e.g.
XiWQX2DX,CX1X2CX2CX3X,X2 (SEQ ID N0.88)) may read as follows: "provided that when one of X, is glutamic acid and X2 is threonine X3 may not be phenylalanine".
It is also to be understood herein that "g" or "gm" is a reference to the gram weight unit; that "C" is a reference to the Celsius temperature unit.
BRIEF DESCRIPTION OF THE DRAWINGS
In drawings which illustrates exemplary embodiments of the present invention;
Fig. 1A is a picture of a zymography gel showing the effect of the PCK3145 derivative (SEQ ID N0.:7) on MMP-9 levels and activity on collagen type 1- treated MatLyLu cells (first lane:marker; second lane:cells; third lane:cells and collagen;
fourth lane:cells, collagen and 500pg/ml of SEQ ID N0.:7; fifth lane:cells, collagen and 1 mg/ml of SEQ ID N0.:7), Fig.1 B is a picture of a western blot membrane showing the effect of the derivative (SEQ ID N0.:7) on MMP-9 expression level (fist lane: MMP9 standard;
second lane:cells; third lane:cells and collagen; fourth lane:cells, collagen and 100pg/ml of SEQ ID N0.:7; fifth lane: cells, collagen and 500p,g/ml of SEQ ID
N0.:7;
sixth lane: cells, collagen and 1 mg/ml of SEQ ID N0.:7), Fig. 1C is a picture of a time-course/dose-response experiment of a MMP-9 secretion (upper panel) and a graph (lower panel) expressing these results in a quantitative manner;
Fig. 2 is a picture of a MMP-9 zymography assay performed on cells induced with cytokines in the presence or absence of PCK3145;
Fig. 3A is the result of a sequence homology search performed on the PCK3145 amino acid sequence (SEQ ID N0.:5) with the Gene Bank Internet database, Fig. 3B is a picture of a westernblot illustrating the inhibitory effect of laminin on PCK3145 (PCK) induced ERK phosphorylation, Fig. 3C is a picture of a further westernblot illustrating the inhibitory effect of laminin on PCK3145 (PCK) induced ERK phosphorylation, Fig. 4A is a picture of a further westernblot illustrating expression of the laminin receptor in several cell lines, Fig. 4B represents pictures of western blots of PCK3145-induced ERK
phosphorylation in laminin receptor transfected U-87 cells or non-transfected cells (mock) and a graph illustrating the results in a quantitative manner, Fig. 5A is a picture of a westernblot performed with anti-laminin receptor or beta-actin antibody on various fractions collected from an affinity column coupled with (Affi-PCK) or not (Affi-Ctl), Fig. 5B is a histogram illustrating the results of Fig. 3A in a quantitative manner, Fig. 6A is a graph illustrating cell binding of labeled-PCK3145 at 4$C and intracellular uptake of labeled-PCK3145 at 37~C and the dilution effect of added unlabelled PCK3145 (cold), Fig. 6B is a histogram illustrating PCK3145 uptake competition experiments performed with scrambled polypeptides 1 (s1 ) and 2 (s2), native PSP94 (PSP), unlabelled PCK3145 (PCK) and laminin (LAM), Ctl=control, Fig. 6C is a histogram illustrating PCK3145 uptake competition experiments performed with green tea catechin (EGCg), green tea catechin lacking gallate moiety (EGC), unlabelled PCK3145 (cold PCK) and laminin (LAM), Ctl=control, Fig. 7A is dose-response of FITC-labeled PCK3145 binding to the cell surface measured by FACS analysis;
Fig. 7B is a graph obtained from FACS analysis of FITC-labeled PCK3145 binding to the cell surface in the absence (upper panel) and in the presence of laminin (lower panel);
Fig. 8A is a picture of a zymography gel showing the effect of the PCK3145 on levels in the presence or absence of laminin or the the laminin-derived SIKVAV
peptide;
Fig. 8B is a histogram quantifying the results obtained in Fig. 8A;
Fig. 9A is a picture illustrating the results of a time-course ERK
phosphorylation experiment determined by a Western blot performed on lyzates of cells incubated with various concentration of PCK3145 for;
Fig. 98 is a picture illustrating ERK-phophorylation determined by a Western blot performed on lyzates of cells incubated for 1 minute with various concentration of PCK3145 with or without the SIKVAV peptide;
Fig.10A are pictures of cells transfected with a laminin receptor or not (mock) adhering to PCK3145-coated dishes;
Fig. 10B is a graph of a time-course of cell (transfected with a laminin receptor or not) adhesion experiment performed on PCK3145-coated dish;
Fig. 10C-panel A. are pictures showing several cell density; panel B. shows expression of a laminin receptor in function of cell density by Western blot;
panel C. is a histogram of results of panel B. expressed in a quantitative manner; panel D. shows a time-course experiment of a laminin receptor expression in cells at a density of 105 by Western blot;
Fig. 11A are pictures of stained PVDF membranes obtained following electrophoresis and transfert of proteins eluted from a PCK3145 coupled affinity matrix;
Fig. 11 B represents the sequence of a first PCK3145 binding protein; serum albumin;
Fig. 11C represents the sequence of a first PCK3145 binding protein; enolase;
Fig.12A is a graph showing inhibition of cell adhesion to PCK3145-coated dishes by enolase or EGCg;
Fig.12B is a histogram showing results of competition of FITC-labeled PCK3145 binding to cells by enolase by FACS analysis;
Fig. 13A -panel A. represents graphs obtained from FACS analysis showing binding of biotinilated-laminin on cell surface (control; upper left panel) and inhibition of binding by excess unlabelled laminin (upper right panel), by PCK3145 (lower left panel) and by EGCg (lower right panel); panel B. is a histogram illustrating the results of panel A. in a quantitative manner;
Fig.13B are pictures of PVDF membranes obtained following electrophoresis of cell lyzates or enolase and transfer to membranes; detection was performed with biotinilated-laminin and streptavidin-HRP (horse radish peroxidase) or biotinilated-laminin and an anti-biotin antibody;
Fig.14 -panel A. is a picture of a gel loaded with RT-PCR-amplified HuR RNA
obtained from cells incubated with PCK3145 in the presence or absence of laminin (Lam) or the SIKVAV peptide; panel B. is a picture of a western blot performed on lyzates obtained from cells incubated with PCK3145 in the presence or absence of laminin (Lam) or the SIKVAV peptide where the level of HuR protein expression is detected with an anti-HuR antibody;
Fig.15 -panel A. represents graphs obtained from FACS analysis of cells incubated or not with PCK3145 and detected with either a labelled anti-CD44 antibody or a labelled anti-MMP-9 antibody; panel B. are histograms illustrating the results of panel A. in a quantitative manner, and;
Fig.16 is a schematic showing the biological effect of PCK3145.
DETAILED DESCRIPTION OF THE INVENTION
Test compounal. The wild type amino acid sequence of PCK3145 has been disclosed, for example, in international application No.: PCT/CA01/01463 and is defined herein in SE4 ID NO.: 5. A PCK3145 derivative has been generated by attaching an acetylaminomethyl group to the sulfur atom of each of the three cysteines of PCK3145. These groups stabilize the compound by preventing formation of peptide dimers or polymer by blocking the sulfhydryl group of cysteines. This PCK3145 derivative is defined in SEQ ID NO.: 7. The drug was manufactured by Multiple Peptide Systems (3550) (General Atomics Court, San Diego, Calif.) using standard solid-phase peptide chemistry and lyophilized into a powder. Other type of synthesis or manufacture method may however be performed to make a peptide or polypeptide of the invention. Other PCK3145 derivatives, analogs and fragments (e.g., SEQ
IDs NO: 88, 98, etc.) may be generated similarly.
Membrane protein labeling : Endothelial or cancer cell membrane proteins will be biotin labeled with EZ-Link Sulfo-NHS-Biotin (Pierce). Confluent dishes containing approximately 3x106 cells will be rinsed with cold PBS and incubated at 4°C with 4 mg of Sulfo-NHS-Biotin. The biotin reagent will be neutralized with Tris-buffer saline. Cells will then be scraped off the dish, pelleted by centrifugation, and lysed with 0.5%
Nonidet P-40 in PBS (NP/PBS). Soluble-labeled membrane proteins will be collected after centrifugation at 11,OOOg at 4°C and used for either BIAcore studies, immunoprecipitations or affinity gel chromatography approaches.
Affinity chromatography will be performed with PCK3145 or scrambled peptide linked to Affi-gel 10 or 15. Four mg of peptide will be coupled overnight to Affi-gel resin in 100 mmol/L sodium carbonate buffer, pH 8.5. Remaining active groups blocked with 100 mmol/L diethanolamine, and the resin equilibrated with NP/PBS. Beads blocked with diethanolamine or to which scrambled peptide or PCK3145 were coupled will be used as control. Biotin-labeled membrane proteins will be passed through the column and allowed to incubate for 30 min. After washing with 50 ml of NP/PBS, bound proteins will be eluted successively with either increasing concentrations of PCK3145, or with successively 5 mmol/L EDTA, 1 mol/L NaCI, and 4 mol/L urea. Fractions will be collected (500 p,1) and screened for the presence of biotin-labeled proteins.
Biotin containing fractions will be pooled and dialyzed against water. Aliquots from each fraction will be electrophoresed on 7-12% SDS-PAGE and transferred to nitrocellulose membranes, and biotin-labeled proteins detected with streptavidin-horseradish peroxidase and enhanced chemiluminescence (ECL). Differentially expressed proteins will then be sent for amino acid sequencing.
Materials. Cell culture media were obtained from Life Technologies (Burlington, Ontario, Canada) and serum was purchased from Hyclone Laboratories (Logan, UT).
Electrophoresis reagents were purchased from Bio-Rad (Mississauga, Ontario, Canada). The polyclonal (C-1158) and monoclonal (A3) antibodies, used for precipitation and detection, respectively, of VEGFR-2, and the anti-PDGFR pAb (958) were obtained from Santa Cruz Biotechnologies (Santa Cruz, CA).
Antiphosphotyrosine mAb PY99 was also purchased from Santa Cruz Biotechnologies.
Anti-phospho-ERK polyclonal antibodies were from Cell Signaling Technology (Beverly, MA). Antimouse and anti-rabbit horseradish peroxidase-linked secondary antibodies were purchased from Jackson ImmunoResearch Laboratories (West Grove, PA) and enhanced chemiluminescence (ECL) reagents were from Amersham Pharmacia Biotech (Baie d'Urf~, Quebec, Canada). Human recombinant PDGF was obtained from R&D Systems (Minneapolis, MN). Micro bicinchoninic acid protein assay reagents were from Pierce (Rockford, IL). All other reagents were from Sigma-Aldrich Canada.
Immunoprecipitation and immunoblotting procedures. After treatment with cytokines, cells were washed once with phosphate-buffered saline (PBS) containing 1 mM sodium orthovanadate and were incubated in the same medium for 1 h at 4°C.
The cells were solubilized on ice in lysis buffer (150 mM NaCI, 10 mM Tris-HCI, pH
7.4, 1 mM EDTA, 1 mM EGTA, 0.5% Nonidet P-40, 1 % Triton X-100) containing 1 mM
sodium orthovanadate. The cells were then scraped from the culture dishes and the resulting lysates were clarified by centrifugation at 10,OOOg for 10 min.
Protein concentrations were determined using the micro bicinchoninic acid method. For immunoprecipitation studies, lysates were clarified by a 1 h incubation at 4°C with a mixture of Protein A/Protein G Sepharose beads. After removal of the Sepharose beads by low-speed centrifugation, identical amounts of protein (200 ,ug) from each sample were transferred to fresh tubes and incubated in lysis buffer overnight at 4°C in the presence of 2 pg/ml of specific antibodies. Immunocomplexes were collected by incubating the mixture with 25 ,u1 (50% suspension) of Protein A- (rabbit primary antibody) or Protein G- (mouse primary antibody) Sepharose beads, for 2 h.
Nonspecifically-bound material was removed by washing the beads three times in 1 ml of lysis buffer containing 1 mM sodium orthovanadate, and bound material was solubilized in 25,u1 of two-fold concentrated Laemmli sample buffer, boiled 5 min, and resolved by SDS-PAGE. The proteins were transferred onto polyvinylidene difluoride (PVDF) membranes, blocked 1 h at room temperature with Tris-buffered salinelTween 20 (147 mM NaCI, 20 mM TrisJHCI, pH 7.5, and 0.1 % Tween 20) containing 2%
bovine serum albumin and incubated overnight at 4°C with primary antibody.
Immunoreactive bands were revealed after a 1 h incubation with horseradish peroxidase-conjugated anti-mouse or anti-rabbft antibodies, and the signals were visualized by enhanced chemiluminescence (Amersham Biosciences, Baie d'Urfee, QC).
Biologically active molecule; Fragments, derivatives and analogues may be prepared by techniques known in the art (recombinant technology, solid phase synthesis, etc.). The biological activity of derivatives, fragments and analogues may be determined by any of the techniques described herein (effect on ERK
phosphorylation) or known in the field to be relevant for any of the biological activity described herein.
Effect on MMP-9 extracellular levels Zymography assays and western blots were performed on cell lines incubated with a PCK3145 derivative (SEQ ID N0.:7).
In the experiment presented in Fig. 1 A, 2.5x105 MatLyLu tumor cells (American Type Culture Collection No.: JHU-5)) were seeded in T-25 flasks containing RPMI
with 10%
fetal bovine serum (FBS). After overnight incubation, the cells were washed once with serum free medium and treated with various concentrations of the PCK3145 derivative (500ug/ml and 1 mg/ml) in the presence of 50ug/ml collagen type-I in serum free RPMI
for 72 hrs. Control cells received 50ug/ml collagen or only serum free medium.
The media were collected after 72 hours of exposure to the PCK3145 derivative and subjected to gelatin zymography. Zymography for MMP-2 and MMP-9 was performed in SDS-polyacrylamide gel electrophoresis (SDS-PAGE) (10%) containing 0.1 gelatin (Invitrogen). Twenty-four microliters of culture media was mixed with non-reducing sample buffer and subjected to electrophoresis without boiling. After electrophoresis, gels were soaked for 30 minutes in 2.5% Triton X-100 solution with 2-3 washing steps. The gels were then incubated for 18 hours at 37gC in buffer containing 50 mM Tris/HCI, pH 7.6, 50 mM NaCI, lOmM CaCl2 and 0.05% Brij-35.
After incubation, the gels were stained with 0.2% Coomassie blue and de-stained until clear proteolytic bands appeared. Gels were scanned with Microtek flatbed scanner (Scanmaker 5 software; Microtek lab, Redondo Beach, CA). The band intensities were determined using the Image Quant software (version 5.0) from molecular Dynamics.
The MMP-9 and MMP-2 gelatinase zymography standard were purchased from Chemicon (catalogue no. CC073). One nanogram of purified human pro-MMP-2 and pro-MMP-9 standards were used in every gel run.
Results of this experiment are illustrated in Fig.lA and indicate that PCK3145 derivative treatment of MatLyLu cells resulted in a dose-dependent reduction of MMP-9 secreted in the cell culture media (a reduction in MMP-9 extracellula levels), as detected by zymography.
Western blot A separate western blot experiment was performed in which MatLyLu cells were treated with 1 OOug/ml, 500ug/ml and 1 mg/ml of the PCK3145 derivative for 72 hrs. At the end of the experiment, the media were collected and concentrated 5 times using Amicon centrifugal filter devices (3500 molecular weight cut-off).
Twenty five microliters samples were separated on SDS-PAGE gel under reducing conditions using pre-cast gels of 4-12% Bis-Tris (Invitrogen). Following electrophoresis, the proteins were transferred on nitrocellulose membrane. Non-specific binding sites were blocked using 5 % skimmed milk in lOmM phosphate buffer saline (PBS) containing 0.05% Tween-20 for 1 hour at room temperature. The membrane was later incubated with a primary antibody (monoclonal, RDI-MMP-9abm-2A5) at a concentration of 1 ug/ml (in 10 mM PBS, containing 0.5% bovine serum albumin (BSA) and 0.05% Tween-20) for 3 hours at room temperature.
The membranes were washed three times in PBS (5 minutes each wash) to remove non-specific binding and they were incubated with the secondary antibody (Rabbit anti-mouse IgG horseradish peroxidase-conjugated (Dako no. 0260)) at a dilution of 1:5000 for one hour.
Detection of specific MMP-9 protein was made by incubating the membrane in ECLTM
reagent (electro-chemoluminescence, Roche) and exposing to the X-ray film.
Results of this experiment are illustrated in Fig.1 B and again indicate that treatment of MatLyLu cells PCK3145 derivative resulted in a dose-dependent reduction of MMP-extracellular levels.
Effect on cytokine-induced MMP-9 extracellular levels PCK3145 has been shown herein to inhibit basal MMP-9 secretion from cells including HT-1080 cells, a human fibrosarcoma cell line provided by American Type Culture Collection (ATCC, Manassas, USA). As will be shown below, this inhibitory effect is also observed on phorbol ester (PMA)- and tumor necrosis factor (TNF)-induced MMP-9 secretion. These two agents trigger specific intracellular signaling that lead either to intracellular Ca*~ release and protein kinase C (PKC) activation, or to TNF-induced signaling that collectively result into strong MMP-9 production. PCK3145 can thus be considered as a potential inhibitor of intracellular signal transduction as it antagonizes both PMA- and TNF-induced MMP-9 secretion as observed by gelatin-zymography (Fig 2).
Sequence homology Using GeneBank Internet data base, a homology search was performed using the amino acid sequence of PCK3145. Homology was found with different chain precursors of laminin (Fig.3A). These included the alpha-2, alpha-5, and beta-I chains of laminin.
The unexpected observation that PCK3145 shares, to some extent, homology with different structural chains of laminin suggests that it may indeed also share the same cell surface receptor.
Competition assays Competitions experiments using several extra-cellular matrix (ECM) purified proteins (including laminin), on the potential of PCK3145 to induce ERK (Extraceliular-signal Regulated protein Kinases 1 or 2) phosphorylation in U-87 cells were then performed.
Indeed, laminin was able to inhibit PCK3145-induced ERK phosphorylation but not Fibrinogen (FN), hyaluronic acid (HA), or Fibrin (Fib) (Fig. 3B). The specific antagonistic effect of laminin on PCK3145 was further confirmed in Fig. 3C.
PCK3145 binding/uptake assays These results strongly suggest that the laminin receptor potentially triggers some of the PCK3145 effects and may potentially be involved in transducing the signaling of PCK3145 from the cell surface. As such, the expression of the 67-kDa laminin receptor (metastasis-associated 67-kDa laminin receptor) in several cell lines was observed using specific immunodetection on cell lysates (20 ug) (Fig. 4A).
In fact, transfection of U-87 cells with the cDNA expressing the recombinant 67-kDa laminin receptor resulted in a significantly sustained PCK-induced ERK
phosphorylation between 10 and 20 minutes (Fig. 4B).
Affinity chromatography was performed to analyze PCK3145 binding to laminin receptor. Briefly, native PCK3145 was cross-linked to Sepharose-activated gel beads, followed by the loading of from U-87 cell lysate and extensive washing of the gel.
Immunodetection was then performed for laminin receptor in gels that have been either coupled or not to PCK3145. This experiment indicate that in fact the laminin receptor possesses affinity to PCK3145 (Fig. 5A) as shown by the increase in laminin receptor immunoreactivity.
Reprobing of that same membrane showed that a house keeping gene such as ~i-actin remained fairly constant and this was further quantified (Fig. 5B).
In order to shed some light into the kinetics of PCK3145 binding and uptake, was iodinated on its unique tyrosine and was used to perform binding assays at 4°C
and uptake at 37°C. PCK3145 is seen to be rapidly taken up into the U-87 cells within the first 20 minutes of incubation, and this uptake kinetic reached a plateau after about 1 hour of incubation (Fig. 6A). When the same kinetic was performed at 4°C, at which condition only binding to the cell surface is thought to happen with minimum intracellular uptake, a much lower saturable time-dependent binding of the radiolabeled PCK3145 was observed. Isotopic dilution is also observed in uptake experiments at 37°C when 10-times excess cold PCK3145 is co-incubated with radiolabeled-PCK3145, and this is reflected by a decreased uptake of PCK31145 to levels close to those found after 1 hr at 4°C. Competition experiments were also performed with different substrates and this was measured at 37gC after a one hour incubation. While Scrambled peptides 1 (s1 ) and 2 (s2) (e.g., SEQ ID N0.:99) had bearly no effect on radiolabeled PCK3145 uptake, laminin (lam) and cold (PCK) were both effective in decreasing that uptake (Fig. 6B). Intriguingly, the native PSP-94 protein (e.g., SEQ ID N0.:1; PSP) only partially inhibited the PCK3145 uptake.
This may potentially be due to incorrect or non-optimal folding of the native protein in solution.
Finally, a second set of competitors was also used to compete with the potential PCK3145 cell surface receptor.
Recent published evidence suggests that the laminin receptor binds the green tea catechin EGCg (Nat Struct Mol Biol. (2004) 11:380-381 ). EGCg was therefore used in uptake competition experiments. These uptake experiments were also performed at 37°C. Results of this experiment indicate that both laminin and EGCg, significantly S antagonized the PCK3145 uptake (Fig. 6C). EGC, which is a catechin found in green tea but that lacks the gallate moiety, failed to compete with PCK3145. As an inhibitory effect of EGCg adhesion of murine melanoma cells to laminin has been observed, a similar effect of PCK3145 is likely to occur (Nat. Struct. Mol. Biol. 2004, 11:380-381 ).
PCK3145 binds to the cell surtace of HT-1080 cells Binding (and internalisation) of iodinated-PCK3145 to the cell surface of cancer cells has been demonstrated herein. An assay has been designed to monitor such binding 1 S to the cell surface with the use of flow cytometry (FACS).
Fluoresceinisothiocyanate (FITC) is currently the most commonly-used fluorescent dye for FACS analysis and was conjugated to the N-terminus of PCK3145. This assay enables to visualize cell binding of FITC-PCK3145 through the shift in fluorescence associated with cells that bind to it. 80-90% confluente HT-1080 cells were trypsinized and counted.
Labeling 24 was performed on 10g cells for 1 hr at 4°C. FITC-PCK3145 effectively bound to the cell surface in a dose-dependent manner with a plateau reached around 10 ~g/ml (Fig 7A). More importantly, FITC-PCK3145 (10 ~g/ml) cell surface binding was substantially inhibited by the incubation of excess 30 p,g/ml laminin-1 (Fig 7B). This latter observation supports that a common cell surface receptor or that some laminin-2S binding activity is shared between PCK3145 and laminin and may trigger the subsequent signaling by PCK3145.
It is to be understood herein that any other markers may be attached to (e.g., biotin, etc.). When a FACS analysis is to be performed it is useful to use a 30 fluorescent marker.
2$
Laminin and laminin-derived peptide SIKVAV antagonize PCK3145 inhibitory action on MMP-9 secretion ' In order to confirm the molecular mechanism involved in PCK3145 inhibitory action on MMP-9 secretion, HT-1080 cells were incubated with either the native laminin-1 protein (Fig 8A, 8B), or with a laminin-1-derived peptide SIKVAV known for its capacity to induce MMP-9 secretion [Freitas et al., (2004) Oral Oncology 40:483-489].
Confluent serum-starved cells were treated with these agents in the presence or not of 300 wg/ml PCK3145 for 24 hours. Conditioned media was isolated and gelatin zymography performed to monitor the extent of MMP-9 extracellular levels.
Results show that PCK3145 is able to inhibit by 50% MMP-9 extracellular levels, while laminin antagonized PCK3145 inhibitory action. Interestingly, SIKVAV-induced MMP-9 secretion was also antagonized by PCK3145 (Fig 8A, 8B). This result also strongly support that laminin and laminin-derived peptides interfere with PCK3145 actions and therefore share common cell surface receptor(s).
PCK3145 triggers rapid intracellular ERK phosphorylation As illustrated in Fig. 9A and 9B, PCK3145 has the capacity to trigger ERK
(Extracellular-signal-Regulated protein Kinases) phosphorylation. A time-course/dose-response experiment was performed. Overnight serum-starved quiescent HT-1080 cells were incubated with vehicle (phosphate-buffered saline (PBS) pH 7.4) or PCK3145 (3-100 pg/ml) for 1, 2 or 5 minutes at 37°C. The cells were scraped from the culture dishes in PBS containing NaF/Na3V04 and incubated in the same medium buffer for 1 h at 4°C. The resulting lysates were further clarified by centrifugation.
Western blotting and immunodetection using anti-phosphoERK and anti-ERK
antibodies was then performed.
The results show that PCK3145 was able to promote ERK phosphorylation as soon as in 1 minute of incubation and maximally at a concentration of 3 pg/ml (Fig 9A) while total ERK levels remained unaffected. Determination of the capacity of laminin-derived peptide SIKVAV to inhibit PCK3145-induced ERK phosphorylation was evaluated. Cells were thus similarly as above treated with either PCK3145, SIKVAV, or an equimolar combination of both and ERK phosphorylation monitored at 1 minute of incubation. While SIKVAV had virtually no effect on ERK phosphorylation, it significantly antagonized that ERK phosphorylation triggered by PCK3145 at 1 and 3 p,g/ml (Fig 9B).
These results indicate that PCK3145 mediates cellular events in a manner which is faster than expected and also that the biological effect is observed at a low dose.
These results indicate that PCK1345 may be administered in humans at a lower dose than previously demonstrated and still it will be sufficient to cause a desired biological effect. These results have an impact in the administration scheme (dose, time of administration, etc.) of the drug (PCK3145).
HT-1080 cells adhere to PCK3145-coated dishes through the 67-kDa laminin receptor As shown above, the overexpression of the recombinant 67-kDa laminin receptor is able to sustain PCK-induced ERK phosphorylation. A cell adhesion assay was designed where increasing concentrations of PCK3145 were coated on dishes and cells subsequently incubated. This coating may be performed for either 1 hour at 37°C
or overnight at 4°C. Blocking with albumin was avoided due to a potential interaction between PCK3145 and albumin (see below). Confluent HT-1080 cells were trypsinised, seeded onto the PCK3145-coated dishes, and adhesion left to proceed for 1 hour at 37°C. Results show that cells adhered with more avidity to increasing doses of PCK3145 (Fig 10A). When the 67-kDa laminin receptor cDNA was transiently transfected into HT-1080 cells, adhesion to PCK3145 was then found increased in comparison to mock cells (Fig 10B).
These results further evidence laminin binding activities to PCK3145 actions.
Noteworthy is the fact that, in the setting of these experimental conditions, it was noticed that cell confluence regulates the laminin receptor protein expression (Fig 10C). Indeed, it was observed that the laminin receptor was expressed at very low levels in low (104 cells / well) density, while its expression drastically increased at high (106 cells / well). This effect was also observed when cells were harvested at different time of incubation (from 24 to 78 hours).
Potential PCK3145-binding proteins revealed by affinity-gel chromatography In order to identify potential PCK3145-binding proteins, an affinity chromatography assay was designed in which PCK3145 was coupled to activated Sepharose-beads.
Cell lysates were then overlaid onto the respective gels and columns washed extensively to minimize non-specific protein binding. Three independent coupling were performed. It was systematically observed that proteins at approximately MW of 58, 47, and 35 kDa were differentially bound to PCK3145-coupled gels (Fig 11A). The corresponding PVDF membranes were cut and sent for protein sequencing. The identity of two of these three PCK-binding candidates was found to be Albumin (Fig 11 B) and enolase (Fig 11 C). However, it is tempting to suggest that i) Albumin may interact with PCK3145 and act as a carrier protein (bovine serum albumin and human serum albumin share conserved regions) and that ii) PCK3145 may interact with a cell surface enolase which is known to possess both laminin and plasminogen binding activities.
Enolase inhibits cell adhesion to PCK3145 The identification of enolase as a potential PCK3145-binding protein is supported by its recently published ability to also bind to laminin [Carneiro et al. (2004) Microbes Infect. 6:604-608]. !n order to provide evidence of a potential role of enolase in PCK3145 effects, a test of cell adhesion to 10 ug/ml PCK3145-coated dished was performed. Cell adhesion was performed for 2 hours at 37°C in the presence or not of 30 ~g/ml enolase or with 30 pM EGCg, a green tea catechin that we have been shown herein to both inhibit MMP secretion and PCK3145 internalization. These results indicate that both enolase and EGCg inhibit cell adhesion to PCK3145-coated dishes (Fig 12A). Although, only very little inhibition (-12%) was observed when cell surface binding of FITC-PCK3145 was assessed by flow cytometry (Fig 12B).
Far-Western ligand binding assay Far-Western is a proteomic approach aimed at identifying potential protein-protein interactions using elctrotransferred proteins onto PVDF membranes. Cell lysates were run on a 7.5% or 12% SDS-gels and transferred to PVDF membranes. Membranes were then blocked with either BSA or powder milk. Binding was then performed with biotinilated-laminin-1 overnight at 4°C. Biotinilated-laminin was previously monitored for its ability to bind HT-1080 cell surface and to be functionally inhibited by excess unlabelled laminin, PCK3145, or EGCg (Fig 13A). We show that both laminin and PCK3145 were significantly able to inhibit the binding of biotinilated-Laminin (~20%
inhibition), while 30 ~M EGCg was extremely potent to inhibit biotinilated-laminin binding. Furthermore, biotinilated-laminin was able to bind to electrotransferred proteins as shown by the detection using either streptavidin-HRP or an anti-biotin antibody method (Fig 13B). Interestingly, when the 47 kDa commercially available enolase was run on the 12% SDS-gel it was also specifically recognized by the biotinilated-laminin.
PCK3145 inhibits HuR gene and protein expression Recent articles indicate that MMP-9 expression to be induced through a stabilizing nuclear factor HuR [Huwiler et al. (2003) J Biol Chem. 278:51748-69J, and that a3b1 integrin (an integrin known to bind laminin) regulates MMP-9 mRNA [Lyer et al., (2005) J Celi Science 118:1185-1195]. These published evidence link Hur, an mRNA
stabilizing factor that is ubiquitously expressed and that has the ability to bind and stabilize mRNA degradation to AU-rich elements (AREs). These elements are expressed in the 3'-untranslated region of several RNAs encoding, for instance, VEGF
and MMP-9. Whether PCK3145 may regulate HuR expression was therefore tested.
Serum-starved cells were treated or not with 300 ~,g/ml PCK3145 for 24 hours in the presence or not of laminin or SIKVAV, and cells harvested for either RNA
extraction or cell homogenates. RT-PCR with specific primers revealed that HuR gene expression was downregulated by PCK3145 and that both laminin and laminin-derived peptide SIKVAV antagonized PCK3145's inhibitory effect (Fig 14). This was further confirmed independently with specific anti-HuR antibody and immunodetection. This effect of PCK3145 on HuR may explain partly the inhibition of MMP-9 expression and subsequent diminished extracellular levels.
PCK3145 triggers CD44 cell surface shedding and inhibits MMP-9 docking at the cell surface Decreased cell migration and adhesion on HA was observed when cells were pretreated with PCK3145 (data not shown). It was shown that this was the results of an increased CD44 cell surface shedding as demonstrated by a strong immunoreactive band observed in the cells which had been pre-treated with PCK3145.
This effect was also shown to happen in parallel with MT1-MMP-transfected cells.
Interestingly, an increase in MT1-MMP expression in the PCK3145-treated cells was shown which may partially explain how PCK may lead to CD44 shedding. The potential implication of these observations on MMP-9 cell surface binding was investigated, since CD44 is also reported to be the docking receptor for MMP-9. HT-1080 cells were treated or not with 300 pg/ml PCK3145 for 24 hours, trypsinised and either labelled with anti-CD44 or anti-MMP-9 antibodies. Flow cytometry measurements clearly show a 25% downregulation in CD44 cell surface expression that is correlated to a 50% inhibition of cell surface-associated MMP-9 (Fig 15).
Altogether, these observations provide a rational for an additional regulation of MMP-9 functions (inhibition of secretion being the first one) by PCK3145 of diminished cell surface docking of MMP-9 to CD44 which may control both ECM degradation and cell migration by MMP-9.
PCK3145 inhibits extracellular matrix (ECM) degradation by MMP-9; a matrix metalloproteinase involved in prostate cancer progression and several other conditions such as, for example, angiogenesis, wound healing, etc. While PCK3145 did not affect MMP-9 enzymatic activity per se, it however significantly reduces its (type-I
collagen-induced) gene expression which, consequently, led to decreased extracellular MMP-9 secreted levels.
Although most published studies have focused on transcriptional control of MMP-9, there is increasing evidence that its expression can also be regulated at the steps of mRNA stability, translation and protein secretion. The ability to modulate MMP-expression at multiple steps through distinct signaling pathways may be particularly important during malignant conversion and metastasis, when tumor cells need to induce or maintain MMP-9 levels in response to changing environmental cues.
The therapeutic effect of PCK3145 on the inhibition of leukemia cell growth was evaluated. Human leukemia cells RPMI-8226 and SR (available at the National Cancer Institute (http://www.dtp.nci.nih.gov/branches/btb/services.html)) were incubated with PCK3145 and cell growth was monitored. Results are expressed in Table 2 below.
Log 10 concentration time Mean optical densities Percent Growth zero Ctrl -1.9 -0.9 0.1 1.1 2.1 -1.9 - 0.9 0.1 1.1 2.1 GI50 TGI LC50 Leukemia RPMI-8226 0.367 0.557 0.501 0.522 0.413 0.357 0.279 71 82 24 -3 -24 4.44 9.80 > 1.25 E2 SR 0.309 0.965 0.956 0.909 0.861 0.526 0.451 99 92 84 33 22 5.83 >1.25 > 1.25 Table 2.
Cell surface laminin binding activities as primary targets for PCK3145.
The novel mechanism of laminin receptor-mediated MMP-9 gene expression provides solid foundation to suggest that PCK3145 acts through receptor-mediated signalling. Several lines of evidence indeed show that PCK3145 targets laminin binding activities (including MMP-9 regulation);
1. FITC-labelled PCK3145 effectively binds to the cell surface, and that this binding is inhibited by either laminin-1 or a laminin-1-derived peptide (SIKVAV) 2. EGCg, a green tea catechin that inhibits MMP-9 secretion, is also a laminin receptor ligand that antagonized cell binding to PCK3145 3. Overexpression of the 67-kDa non-integrin laminin receptor in cells promotes binding/recognition to PCK3145 4. PCK3145-affinity chromatography as identified enolase, an enzyme recently thought to also possess laminin-binding properties, and which have been shown herein to inhibit cell binding to PCK3145.
Increased expression of the 67-kDa laminin receptor has been reported in a variety of human carcinomas (colon, breast, stomach, liver, and ovary) and directly correlates with a higher proliferation rate of malignant cells and tendency to metastasize. In addition, the 67-kDa laminin receptor is detectable in anaplastic large cell lymphomas and in small subsets of high-grade B-cell non-Hodgkin's or Hodgkin's lymphomas.
More recently, expression of the 67-kDa laminin receptor has been found to mediate acute myeloid leukemia cell adhesion to laminin and to be frequently associated with monocytic differentiation. In light of these documented expression of the 67-kDa laminin receptor and in light of the results presented herein, it is thus tempting to conclude that cancer (e,g., of lymphoid or monocytic origin, etc.) other than prostate cancer, or specific stage of development such as in monocytic-oriented acute myeloid leukemia may be targeted by PCK3145.
PCK3145 triggers intracellular signalling that regulates HuR expression.
The unexpected observation that PCK3145 shares, to some extent, homology with different structural chains of laminin suggests that it may indeed also share the same cell surface receptor. The results disclosed herein support this suggestion.
Indeed, laminin and PCK3145 competed for ERK phosphorylation as well as for the binding/uptake of PCK3145. It was shown herein that intracellular signalling leads to MMP-9 decreased secretion and that HuR, a MMP-9 mRNA stabilizing factor, is targeted by PCK3145. Indeed, both of HuR gene and protein expression were downregulated by PCK3145, and this dowregulation was reversed by laminin receptor ligands. PCK3145 is therefore a laminin receptor-mediated signal transduction inhibitor.
As HuR also binds to the AU-rich elements of RNAs encoding genes for cytokines, growth factors, tumor suppressor genes, proto-oncogene, and cell cycle regulators, one can envisioned that downregulation of HuR by PCK3145 inhibits several cellular processes and may therefore be used to treat several diseases associated with HuR
expression.
Fig. 16 is a schematic summarizing the effect of PCK on its target and the biological event and signaling event occuring thereafter.
$ The content of each publication, patent and patent application mentioned in the present application is incorporated herein by reference.
Although the present invention has been described in details herein and illustrated in the accompanying drawings, it is to be understood that the invention is not limited to the embodiments described herein and that various changes and modifications may be effected without departing from the scope or spirit of the present invention.
1$ sss ~scx=r~r=o~r: saQ =n wo: i Ser Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser 2$
Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu Trp Ile Ile 3$
ssQus~cs nests=pz=o~r: saQ =n r~o: a:
Glu Ala Glu Ala Tyr Val Glu Phe Ser Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn 4$ 20 25 30 Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys $0 Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp $$
Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser S
Val Ser Glu Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID NO: 3:
Tyr Thr Cys Ser Val Ser Glu Pro Gly Ile SEQUENCE DESCRIPTION: SEQ ID NO: 4:
Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu SEQUENCE DESCRIPTION: 8EQ ID NO: 5:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SSQ ID NO: 6:
Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu 3S Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID NO: 7 (an acetylaminomethyl group may be attached to the sulfur atom of cysteine 7, of cysteine 10 and/or of cysteine 12) 4S Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SO SEQUENCE DESCRIPTION: SEQ ID NO: 8:
SS
SEQUENCE DESCRIPTIONS SEQ ID NO: 9:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu SEQUENCE DESCRIPTION: SEQ ID NO: 10:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile SEQUENCE DESCRIPTION: SEQ ID NO: 11:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser SEQUENCE DESCRIPTION: SEQ ID NO: 12:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys SEQUENCE DESCRIPTION: SEQ ID NO: 13:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys SEQUENCE DESCRIPTION: SEQ ID NO: 14:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr SEQUENCE DESCRIPTION: SEQ ID NO: 15:
$0 Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu SEQUENCE DESCRIPTION: SEQ ID NO: 16:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val SEQUENCE DESCRIPTION: SEQ ID NO: 17:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser SEQDENCE DESCRIPTION: SEQ ID NO: 18:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr sEQvBNCE DESCRIPTION: sEQ ID No: 1s:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro SEQ~BNCE DESCRIPTION: SEQ ID NO: Z0:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val SEQUENCE DESCRIPTION: SEQ ID N0: al:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly SBQUSNCS DSSCRIBTION: SEQ ID N0: Z2:
SO Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr SEQUENCE DESCRIBTION: SEQ ID NOs Z3:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp SEQUSNCE DESCRIBTION: SEQ ID NO: 24:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys SEQUENCE DESCRIPTION: SEQ ID NO: a5:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp SEQUENCE DESCRIPTION: SEQ ID NO: 26:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn sEQvENCE DESCRI~rxoN: sEQ ID No: a~:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys SEQUENCE DESCRIPTION: SEQ ID NO: 28:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln SEQUENCE DESCRIPTION: SEQ ID NO: 29:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg SEQUENCE DESCRIPTION: SEQ ID NO: 30:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile SEQUENCE DESCRIPTION: SEQ ID NOs 31:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe sEQvENCE DESCRIPTION: sEQ Ia No: 3a:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys SEQUENCE DESCRIPTION: SEQ ID NO: 33:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp 4S Asn Cys Gln Arg Ile Phe Lys Lys SEQUENCE DESCRIPTION: SEQ ID NO: 34:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu SEQUENCE DESCRIPTION: SEQ ID NO: 35:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu $
Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp SEQUENCE 36:
DESCRIPTION:
SEQ ID
NO:
1$ Glu Trp GlnThrAsp Asn Glu ThrCys Thr Cys Tyr Glu Cys Thr Glu Ile Ser CysCysThr Leu Ser ThrPro Val Gly Tyr Asp Val Lys Asp Asn Cys GlnArgIle Phe Lys GluAsp Cys Lys 2$
SEQUENCE DESCRIPTION: SEQ ID NO: 39:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys 3$ 35 40 SEQUENCE DESCRIPTION: SEQ ID NOs 38:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu 4$ Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr $0 SEQDSNCE DESCRIPTION: 39:
SEQ ID NO:
Glu Trp Gln ThrAsp Asn Glu Thr Cys Cys Tyr Glu Thr Cys Thr Glu $$
Ile Ser Cys CysThr Leu Ser Thr Pro Gly Tyr Asp Lys Val Val Asp Asn Cys Gln ArgIle Phe Lys Glu Asp Lys Tyr Ile Lys Cys saQosNCS 40:
a$scRI~rIONs sEQ Ia No:
Glu Trp Gln Asp Asn Cys Thr Thr Cys Glu Thr Thr Glu Cys Tyr Glu S
Ile Ser Cys Thr Leu Val Thr Val Gly Asp Lys Cys Ser Pro Tyr Asp Asn Cys Gln Ile Phe Lys Glu Cys Lys Ile Val Arg Lys Asp Tyr SEQUENCE 41:
DESCRIPTION:
SEQ
ID
NO:
Glu Trp Gln Asp Asn Glu Thr Thr Cys Glu Thr Thr Cys Cys Tyr Glu Ile Ser Cys Thr Leu Ser Thr Val Gly Asp Lys Cys Val Pro Tyr Asp Asn Cys Gln Ile Phe Lys Glu Cys Lys Ile Val Arg Lys Asp Tyr Val SEQUENCE 42:
DBSCRIPTIONs SEQ
ID
NO:
ZS Glu Trp Thr Asp Asn Glu Thr Thr Cys Glu Thr Gln Cys Cys Tyr Glu Ile Ser Cys Thr Leu Ser Thr Val Gly Asp Lys Cys Val Pro Tyr Asp Asn Cys Arg Ile Phe Lys Glu Cys Lys Ile Val Gln Lys Asp Tyr Val Glu SEQDSNC3 DESCRIPTION: SEQ ID NO: d3:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys SO
SEQUENCE DESCRIPTION: SEQ ID NO: 44:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu SS
Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys S$QU$NCE D$SCRIPTION: S$Q ID NO: 45:
$ Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp SEQ'V$NCE DESCRIPTION: S$Q ID NO: 46:
Glu Trp GlnThrAsp Asn Glu ThrCysThr Cys Tyr Thr Cys Glu Glu Ile Ser CysCysThr Leu Ser ThrProVal Gly Tyr Lys Val Asp Asp Asn Cys GlnArgIle Phe Lys GluAspCys Lys Tyr Val Lys Ile Val Glu Lys LysAspPro s$Qv$NCE aasCRI~rION: saQ ID No: 4~:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys 50 S$QZJSNCE DESCRIPTION: S$Q ID NO: 48:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu $$ Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys SEQUENCE DESCRIpTIONs SEQ ID NOs 49:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr SEQDENCB DESCRIPTION: S8Q ID NO: 50:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val 30 Glu Lys Lys Asp Pro Lys Lys Thr Cys SEQUENCE DESCRIPTION: SEQ ID N0: 51:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val VaI
Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser SEQO'BNCE DESCRIPTION: S8Q ID NO: 52:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val SEQUENCE DESCRIPTION: SEQ ID N0: 53:
GIu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr GIu Thr Glu $ 1 5 10 15 Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser sEQvsNCE assCRIPTION: SEQ Ia NO: 54:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu 88QUENCE DESCRIPTION: SEQ ID NO: 55:
Glu Trp GlnThrAsp AsnCys GluThrCys ThrCysTyr Glu Thr Glu Ile Ser CysCysThr LeuVal SerThrPro ValGlyTyr Asp Lys Asp Asn Cys GlnArgIle PheLys LysGluAsp CysLysTyr Ile Val Val Glu Lys LysAspPro LysLys ThrCysSer ValSerGlu Trp SEQt~NCB DESCRIBTION: SEQ ID NO: 56:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp $S Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu Trp Ile SEQUENCE DESCRIPTION: SEQ ID NO: 57:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu S
Ile Ser Cys Cys Thr Leu Val Ser Thr Pro Val Gly Tyr Asp Lys Asp Asn Cys Gln Arg Ile Phe Lys Lys Glu Asp Cys Lys Tyr Ile Val Val Glu Lys Lys Asp Pro Lys Lys Thr Cys Ser Val Ser Glu Trp Ile Ile SEQUENCE DESCRIPTION: SEQ ID N0: 58:
Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SBQUSNC$ DESCRIPTION: $EQ ID N0: 59:
Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUBNCE DESCRIPTION: SEQ ID NO: 60:
Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 61:
Pro Ile Asn Ser Glu Trp GIn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 4S SEQUENCE DESCRIPTION: SEQ ID NO: 6Z:
His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr S0 Cys Tyr Glu Thr SS
SEQvsNCE DsscRI~rION: ssQ ID No: s3:
Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys S
Thr Cys Tyr Glu Thr SEQZJSNCE DESCRIPTION: SEQ ID NOs 64:
Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr IS SBQjJENCE DESCRIPTION: SEQ ID NOs 65:
Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu 20 Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 66:
Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQpENCE DESCRIPTION: SEQ ID NO: 67:
3S Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQTJENCE DESCRIPTION: SEQ ID NOs 68:
Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SO SEQV8NCE DESCRIPTION: SEQ ID NO: 69:
Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr SS Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NOs 70:
Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NO: 71:
Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp IS Gln Thr Asp A~On Cys Glu Thr Cys 25r Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 72:
Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 73:
Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser 3~ 1 5 10 15 Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 74:
Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 4S SEQUFNCE DESCRIPTION: SEQ ID NOs 75:
Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile S0 Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SS SEQZ1ENCE DESCRIPTION: SEQ ID NOs 76:
Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 77:
Pro Gly Asp Ser~Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQDENCE DESCRIPTION: SEQ ID NOs 78:
20 Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID N0: 79:
Gly Val ProGlyAsp SerThr ArgLys CysMetAspLeu LysGlyAsn Lys His ProIleAsn SerGlu TrpGln ThrAspAsnCys GluThrCys Thr Cys TyrGluThr SEQUENCE 80:
DESCRIB'1'ION:
ID
NO:
Glu Gly ValProGly AspSer ThrArg LysCysMetAsp LeuLysGly Asn Lys HisProIle AsnSer GluTrp GlnThrAspAsn CysGluThr Cys Thr CysTyrGlu Thr S~ SEQUENCE DESCRIhTION: SEQ ID NO: 81:
Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Sex Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 82:
$ Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 83:
Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 84:
Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIBTION: SEQ ID NO: 85:
Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 86:
Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro Ile Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQvBNCS D$SCRIPTIOD1: SSQ ID NO: 89:
Ser Cys Tyr Phe Ile Pro Asn Glu Gly Val Pro Gly Asp Ser Thr Arg Lys Cys Met Asp Leu Lys Gly Asn Lys His Pro IIe Asn Ser Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr INirORI~ATION S8a ID L~s 88:
FOR
IS (i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 15 (B) TYPE: AMINO ACID
(C) STRANDEDNESS: SINGLE
(D) TOPOLOGY: LINEAR
ZO (ii) MOLECULE TYPE:
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 1 OTHER INFORMATION : The residue his position in t is 2S either glutamic acid, asparagine,aspartic acid.
or (ix) FEATURE
NAME/KEY : Modified site LOCATION : 4 (D)OTHER INFORMATION : The residuethis position in 30 is either threonine, or serine.
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 6 (D)OTHER INFORMATION : The residuethis position in 35 is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
NAME/KEY : Modified site LOCATION : 8 4O (D)OTHER INFORMATION : The residuethis position in is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
NAME/KEY : Modified site 4S LOCATION : 9 (D)OTHER INFORMATION : The residuethis position in is either threonine, or serine.
(ix) FEATURE
NAME/KEY : Modified site SO (B)LOCATION : 11 (D)OTHER INFORMATION : The residuethis position in is either threonine, or serine.
(ix) FEATURE
(A)NAME/KEY : Modified site SS (B)LOCATION : 13 (D)OTHER INFORMATION : The residuethis position in is either tyrosine, or phenylalanine.
(ix) FEATURE
NAME/KEY : Modified site 6O (B)LOCATION : 14 (D)OTHER INFORMATION : The residuethis position in is either glutamic acid, asparagine,or aspartic acid.
(ix) FEATURE
fiS (A)NAME/KEY : Modified site (B)LOCATION : 15 (D)OTHER INFORMATION : The residue in this position is either threonine, or serine.
(vi)ORIGINAL SOURCE:
S (A) ORGANISM:
(xi) SEQUENCE DESCRIPTION: SEQ ID N0: 88:
Xaa Trp Gln Xaa Asp Xaa Cys Xaa Xaa Cys Xaa Cys Xaa Xaa Xaa SEQUENCE DESCRIPTION: SEQ ID N0: 89:
IS Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 90:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SEQUENCE DESCRIPTION: SEQ ID NO: 91:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr Glu Trp Gln ThrAspAsn Cys ThrCysThr Tyr Glu Thr Glu Glu Cys Trp Gln Thr AspAsnCys Glu CysThrCys Glu Thr Glu Trp Thr Tyr Gln Thr Asp AsnCysGlu Thr ThrCysTyr Thr Cys Glu SEQUENCE DESCRIPTION: SEQ ID NO: 92:
SO Glu Tyr Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr S
sBQt~Ca DESCRIPTION: SaQ ID NO: 93:
Glu Trp Asn Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr SaQvENCa DaSCRIPTION: SEQ ID NO: 94:
Glu Trp Gln Thr Asp Gln Ser GIu Thr Cys Thr Cys Tyr Asp Thr SaQtJBNCE DaSCRIPTION: 88Q ID NO: 95:
Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr 1S S8QU8NC8 DaSCRIPTION: SaQ ID NO: 96:
Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys Tyr Glu Thr sEQvErrca DascRIPTION: saQ ID No: 9~:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys SEQDaNCa DESCRIPTIONS SEQ ID NO: 98:
Glu Trp Gln Thr Asp Asn Cys Glu Thr Cys Thr Cys D-Tyr Glu Thr SEQVSNCB DESCRIPTION: SEQ ID NO: 99 (scarmbled neptids):
Thr-Cys(Acm)-Glu-Asn-Cys(Acm)-Thr-Glu-Thr-Gln-Trp-Cys(Acm)-Glu-Thr-Asp-Tyr
Claims (5)
1. The use of a compound selected from the group consisting of:
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for promoting signal transduction and/or signal transduction-mediated event in a mammal.
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for promoting signal transduction and/or signal transduction-mediated event in a mammal.
2. The use of a compound selected from the group consisting of;
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event in a mammal.
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for promoting laminin receptor signal transduction and/or laminin receptor signal transduction-mediated event in a mammal.
3. The use of a compound selected from the group consisting of;
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for detecting a laminin receptor in a cell, tissue or in a mammal thereof.
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for detecting a laminin receptor in a cell, tissue or in a mammal thereof.
4. The use of a compound selected from the group consisting of;
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal.
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for inhibiting laminin and laminin-induced laminin receptor mediated signal transduction in a mammal.
5. The use of a compound selected from the group consisting of;
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for the preparation of a pharmaceutical composition for treating leukemia.
a) SEQ ID NO.:5, b) a SEQ ID NO.:5 biologically active derivative, c) a SEQ ID NO.:5 biologically active fragment, d) a SEQ ID NO.:5 biologically active analog, and e) combination of any one of a) through d), for the preparation of a pharmaceutical composition for treating leukemia.
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA002502479A CA2502479A1 (en) | 2004-12-01 | 2005-04-15 | Laminin receptor binding molecule |
EP05815992A EP1833501A4 (en) | 2004-12-01 | 2005-12-01 | Laminin receptor binding molecule |
PCT/CA2005/001831 WO2006058431A1 (en) | 2004-12-01 | 2005-12-01 | Laminin receptor binding molecule |
CA002591301A CA2591301A1 (en) | 2004-12-01 | 2005-12-01 | Laminin receptor binding molecule |
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA2,488,777 | 2004-12-01 | ||
CA 2488777 CA2488777A1 (en) | 2004-12-01 | 2004-12-01 | Laminin receptor binding molecule |
CA002502479A CA2502479A1 (en) | 2004-12-01 | 2005-04-15 | Laminin receptor binding molecule |
Publications (1)
Publication Number | Publication Date |
---|---|
CA2502479A1 true CA2502479A1 (en) | 2006-06-01 |
Family
ID=36564723
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA002502479A Abandoned CA2502479A1 (en) | 2004-12-01 | 2005-04-15 | Laminin receptor binding molecule |
Country Status (3)
Country | Link |
---|---|
EP (1) | EP1833501A4 (en) |
CA (1) | CA2502479A1 (en) |
WO (1) | WO2006058431A1 (en) |
Family Cites Families (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4861710A (en) * | 1986-09-26 | 1989-08-29 | The United States Of America As Represented By The Department Of Health And Human Services | Recombinant DNA clone encoding laminin receptor |
US5556609A (en) * | 1992-02-20 | 1996-09-17 | Rhomed Incorporated | YIGSR peptide radiopharmaceutical applications |
US5428011A (en) * | 1992-06-16 | 1995-06-27 | Procyon Biopharma, Inc. | Pharmaceutical preparations for inhibiting tumours associated with prostate adenocarcinoma |
CN1286697A (en) * | 1998-12-10 | 2001-03-07 | 上海第二医科大学 | NPCAHH01: human transmembrane protein E3-16 gene |
CA2355334A1 (en) * | 2000-10-16 | 2002-04-16 | Procyon Biopharma Inc. | Pharmaceutical preparations and methods for inhibiting tumors |
CA2361736A1 (en) * | 2001-11-08 | 2003-05-08 | Unknown | Psp 94: use for treatment of hypercalcemia and bone metastasis |
-
2005
- 2005-04-15 CA CA002502479A patent/CA2502479A1/en not_active Abandoned
- 2005-12-01 EP EP05815992A patent/EP1833501A4/en not_active Withdrawn
- 2005-12-01 WO PCT/CA2005/001831 patent/WO2006058431A1/en active Application Filing
Also Published As
Publication number | Publication date |
---|---|
EP1833501A4 (en) | 2009-09-16 |
EP1833501A1 (en) | 2007-09-19 |
WO2006058431A1 (en) | 2006-06-08 |
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Legal Events
Date | Code | Title | Description |
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FZDE | Dead |