CA2444604A1 - Procede de soustraction computationnelle - Google Patents

Procede de soustraction computationnelle Download PDF

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Publication number
CA2444604A1
CA2444604A1 CA002444604A CA2444604A CA2444604A1 CA 2444604 A1 CA2444604 A1 CA 2444604A1 CA 002444604 A CA002444604 A CA 002444604A CA 2444604 A CA2444604 A CA 2444604A CA 2444604 A1 CA2444604 A1 CA 2444604A1
Authority
CA
Canada
Prior art keywords
sequences
database
sequence
host organism
microbe
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002444604A
Other languages
English (en)
Inventor
Matthew L. Meyerson
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Dana Farber Cancer Institute Inc
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2444604A1 publication Critical patent/CA2444604A1/fr
Abandoned legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

L'invention concerne un procédé et un système permettant d'effectuer une soustraction computationnelle afin de détecter des microbes au sein d'un organisme hôte. Selon certains aspects, les microbes sont des agents pathogènes et le système est utilisé pour identifier des séquences appartenant à ces agents qui peuvent être utilisés dans des méthodes de diagnostic et de traitement. En outre, les microbes peuvent être des organismes symbiotiques, tels que des organismes parasitaires ou commensaux. De préférence, on utilise des séquences candidates identifiées comme appartenant à un microbe pour isoler et cloner des séquences supplémentaires provenant du microbe.
CA002444604A 2001-04-19 2001-04-19 Procede de soustraction computationnelle Abandoned CA2444604A1 (fr)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/US2001/012736 WO2001054557A2 (fr) 2001-04-19 2001-04-19 Procede de soustraction computationnelle

Publications (1)

Publication Number Publication Date
CA2444604A1 true CA2444604A1 (fr) 2002-08-02

Family

ID=21742516

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002444604A Abandoned CA2444604A1 (fr) 2001-04-19 2001-04-19 Procede de soustraction computationnelle

Country Status (4)

Country Link
EP (1) EP1390895A4 (fr)
AU (1) AU2001255485A1 (fr)
CA (1) CA2444604A1 (fr)
WO (1) WO2001054557A2 (fr)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6996477B2 (en) * 2001-04-19 2006-02-07 Dana Farber Cancer Institute, Inc. Computational subtraction method
WO2005079357A2 (fr) * 2004-02-17 2005-09-01 Dana Farber Cancer Institute Representations d'acides nucleiques mettant en oeuvre des produits de clivage d'endonucleases de restriction de type iib

Also Published As

Publication number Publication date
AU2001255485A1 (en) 2001-08-07
WO2001054557A2 (fr) 2001-08-02
EP1390895A4 (fr) 2008-04-02
EP1390895A2 (fr) 2004-02-25
WO2001054557A3 (fr) 2002-03-21

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Legal Events

Date Code Title Description
EEER Examination request
FZDE Discontinued