CA2335346A1 - Sara proteins - Google Patents

Abstract

A new family of proteins, the SARA proteins, has been identified. These proteins bind to receptor-regulated Smad proteins and modulate signal transduction by TGF.beta., activin and bone morphogenetic protein.

Description

SARA PROTEINS w Field of the Invention The invention relates to a family of proteins, the SARA proteins, which bind to receptor-regulated Smad proteins and are involved in appropriate localization of these Smad proteins for receptor activation.
Background of the Invention The Transforming Growth Factor-beta (TGF(3) superfamily, whose members include TGF~is, activins and bone morphogenetic proteins (BMPs), have wide ranging effects on cells of diverse origins (Attisano and Wrana, 1998;
Heldin et al., 1997; Kretzschmar and Massague, 1998). Signaling by these secreted factors is initiated upon interaction with a family of cell-surface transmembrane serine/threonine kinases, known as type I and type II receptors.
Ligand induces formation of a typel/typell heteromeric complex which permits the constitutively active type II receptor to phosphorylate, and thereby activate, the type I receptor (Wrana et al., 1994). This activated type I receptor then propagates the signal to a family of intracellular signaling mediators known as Smads (Attisano and Wrana, 1998; Heldin et al., 1997; Kretzschmar and Massague, 1998).
The first members of the Smad family identified in invertebrates were the Drosophila MAD and the C. elegans sma genes (sma-2, sma-3 and sma-4; Savage et al., 1996; Sekelsky et al., 1995). Currently, the family includes additional invertebrate Smads, as well as nine vertebrate members, Smad1 through 9 25 (Attisano and Wrana, 1998; Heldin et al., 1997; Kretzschmar and Massague, 1998). Smad proteins contain two conserved amino (MH1) and carboxy (MH2) terminal regions separated by a more divergent linker region. !n general, Smad proteins can be subdivided into three groups; the receptor-regulated Smads, which include Smad 1, 2, 3, 5 and 8, Mad, sma-2 and sma-3; the common Smads, Smad4 and Medea, and the antagonistic Smads, which include Smad6, 7 and 9, DAD and daf-3 (Heldin et al., 1997; Nakayama et al., 1998; Patterson et al., 1997).
Numerous studies with vertebrate Smad proteins have provided insights into the differential functions of these proteins in mediating signaling.
Receptor-regulated Smads are direct substrates of specific type I receptors and the proteins are phosphorylated on the last two serines at the carboxy-terminus within a highly conserved SSXS motif (Abdollah et al., 1997; Kretzschmar et al., 1997;
Liu et al., 19976; Macias-Silva et al., 1996; Souchelnytskyi et al., 1997).
Interestingly, Smad2 and Smad3 are substrates of TGF/3 or activin receptors and 10 mediate signaling by these ligands (Liu et al., 19976; Macias-Sifva et al., 1996;
Nakao et al., 1997a), whereas Smadl, S and 8 appear to be targets of BMP
receptors and thereby propagate BMP signals (Chen et al., 19976; Hoodless et al., 1995; Kretzschmar et al., 1997; Nishimura et al., 1998). Once phosphorylated, these Smads bind to the common Smad, Smad4, which lacks the carboxy-terminal phosphorylation site and is not a target for receptor phosphorylation (Lagna et al., 1996; Zhang et al., 1997). Heteromeric complexes of the receptor-regulated Smad and Smad4 translocate to the nucleus where they function to regulate the transcriptiona) activation of specific target genes. The antagonist Smads, Smad6, 7 and 9 appear to function by blocking 20 ligand-dependent signaling by preventing access of receptor-regulated Smads to the type I receptor or possibly by blocking formation of heteromeric complexes with Smad4 (reviewed in Heldin et al., 1997).
Analysis of the nuclear function of Smads has demonstrated that Smads can act as transcriptional activators and that some Smads, including Drosophila Mad, and the vertebrate Smad3 and Smad4, can bind directly to DNA, albeit at relatively low specificity and affinity (Dennler et al., 1998; Kim et al., 1997;
Labbe et al., 1998; Yingling et al., 1997; Zawel et al., 1998).
Localization of Smads is critical in controlling their activity and Smad phosphorylation by the type I receptor regulates Smad activity by inducing nuclear accumulation (Attisano and Wrana, 1998; Heldin et al., 1997;
Kretzschmar and Massague, 1998). However, little is known about how Smad WO 00/05360 PC'T/CA99/00656 localization is controlled prior to phosphorylation and how this might function in modulating receptor interactions with its Smad substrates.
Summary of the Invention S Smad proteins (Smads) transmit signals from transmembrane ser/thr kinase receptors to the nucleus. Mammalian and non-mammalian proteins have been identified which interact directly with Smads and are designated the Smad Anchor for Receptor Activation or SARA proteins.
The invention provides cDNA sequences encoding this previously 10 undescribed family of SARA proteins which bind to receptor-regulated Smad proteins and ensure appropriate localization of these Smad proteins for activation by a Type I receptor of a TGF~3, activin or BMP signaling pathway.
For example, TGF~3 signaling induces dissociation of Smad2 or Smad3 from a SARA protein with concomitant formation of Smad2/Smad4 or 15 Smad3/Smad4 complexes and nuclear translocation. In the absence of signaling, SARA functions to recruit a particular Smad (eg. Smad2 or Smad3) to distinct subcellufar sites in the cell and interacts with the TGF~i superfamily receptor complex in cooperation with the particular receptor regulated Smad. Mutations in hSARAI that cause mislocalization of Smad2, and interfere with receptor 20 association, inhibit receptor-dependent transcriptional responses, indicating that regulation of Smad localization is essential for TGF(i superfamily signaling.
The invention provides a novel component of the signal transduction pathway that functions to anchor Smads to specific subcellular sites for activation by the Type I receptor of the TGF~i, activin or BMP signaling pathways.
25 The SARA proteins are characterised by the presence of three domains, a double zinc finger or FYVE domain responsible for the subcellular localisation of the SARA protein or SARA-Smad complex, a Smad-binding domain which mediates the interaction or binding of one or more species of Smad protein and a carboxy terminal domain which mediates association with the TGF~3 30 superfamily receptor. The FYVE domain may bind phosphatidyl inositol-3-phosphate.

WO 00/05360 PC'T/CA99/00656 In accordance with one embodiment, the invention provides isolated polynucleotides comprising nucleotide sequences encoding SARA proteins.
fn accordance with a further series of embodiments, the invention provides an isolated pofynucleotide selected from the group consisting of (a) a nucleotide sequence encoding a human SARA protein;
(b) a nucleotide sequence encoding a mammalian SARA protein;
(c) a nucleotide sequence encoding a non-mammalian SARA
protein;
(d) a nucleotide sequence encoding the human SARA amino acid sequence of Table 2 (hSARAI: Sequence ID N0:2);
(e) a nucleotide sequence encoding the human SARA amino acid sequence of Table 4 (hSARA2: Sequence ID N0:4);
(f) a nucleotide sequence encoding the Xenopus SARA amino acid sequence of Table 6 (XSARA1: Sequence ID N0:6);
(g) a nucleotide sequence encoding the Xenopus SARA amino acid sequence of Table 8 (XSARA2: Sequence ID N0:8).
In accordance with a further embodiment, the invention provides the nucleotide sequences of Table 1 (human SARA1 or hSARAI), Table 3 (human SARA2 or hSARA2), Table 5 (Xenopus SARA1 or XSARA1 ) and Table 7 (Xenopus SARA2 or XSARA2).
In accordance with a further embodiment, the invention provides recombinant vectors including the polynucleotides disclosed herein and host cells transformed with these vectors.
The invention further provides a method for producing SARA proteins, comprising culturing such host cells to permit expression of a SARA protein-encoding polynucleotide and production of the protein.
The invention also includes polynucleotides which are complementary to the disclosed nucleotide sequences, polynucleotides which hybridize to these sequences under high stringency and degeneracy equivalents of these sequences.

WO 00/05360 PCTlCA99/00656 In accordance with a further embodiment, the invention provides antisense molecules which may be used to prevent expression of a SARA
protein. Such antisense molecules can be synthesised by methods known to those skilled in the art and include phosphorothioates and similar compounds.

5 The invention further includes polymorphisms and alternatively spliced versions of the disclosed SARA genes and proteins wherein nucleotide or amino acid substitutions or deletions do not substantially affect the functioning of the gene or its encoded protein.
The invention also enables the identification and isolation of allelic variants or homologues of the described SARA genes, and their corresponding proteins, using standard hybridisation screening or PCR techniques.
The invention provides a method for identifying allelic variants or homologues of the described SARA genes, comprising choosing a nucleic acid probe or primer capable of hybridizing to a SARA
7 5 gene sequence under stringent hybridisation conditions;
mixing the probe or primer with a sample of nucleic acids which may contain a nucleic acid corresponding to the variant or homologue; and detecting hybridisation of the probe or primer to the nucleic acid corresponding to the variant or homologue.
In accordance with a further embodiment, the invention provides fragments of the disclosed polynucieotides, such as polynucleotides of at least 10, preferably 15, more preferably 20 consecutive nucleotides of the disclosed polynucleotide sequences. These fragments are useful as probes and PCR
primers or for encoding fragments, functional domains or antigenic determinants of SARA proteins.
In accordance with a further embodiment, the invention provides substantially purified SARA proteins, including the proteins of Table 2 (hSARAI), Table 4 (hSARA2), Table 6 (XSARA1) and Table 8 (XSARA2).
in accordance with one embodiment, a SARA protein has a FYVE domain, a Smad binding domain (SBD) and an amino acid sequence having at least 50°/°
overall identity with the amino acid sequence of hSARAI (Sequence !D N0:2).

1~V0 00/05360 PCT/CA99/00656 In accordance with a preferred embodiment, a SARA protein has a FYVE
domain having at least 65% identity of amino acid sequence with the FYVE
domain of hSARAI and a C-terminal sequence of 550 consecutive amino acids which have at least 50% identity with the C-terminal 550 amino acid residues of hSARAI.
in accordance with a more preferred embodiment, a SARA protein has a FYVE domain having at least 65°/° identity of amino acid sequence with the FYVE domain of hSARAI and wherein the portion of the SBD corresponding to amino acid residues 721 to 740 of hSARAI has at least 80°l0 identity with that portion of hSARAI.
The invention further provides a method for producing antibodies which selectively bind to a SARA protein comprising the steps of administering an immunogenically effective amount of a SARA
immunogen to an animal;
allowing the animal to produce antibodies to the immunogen; and obtaining the antibodies from the animal or from a cell culture derived therefrom.
The invention further provides substantially pure antibodies which bind selectively to an antigenic determinant of a SARA protein. The antibodies of the invention include pofyclonal antibodies, monoclonal antibodies and single chain antibodies.
The invention includes analogues of the disclosed protein sequences, having conservative amino acid substitutions therein. The invention also includes fragments of the disclosed protein sequences, such as peptides of at least 6, preferably 10, more preferably 20 consecutive amino acids of the disclosed protein sequences.
The invention further provides polypeptides comprising at least one functional domain or at least an antigenic determinant of a SARA protein.
In accordance with a further embodiment, the invention provides peptides which comprise SARA protein Smad binding domains and polynucleotides which encode such peptides.

In accordance with a further embodiment, the invention provides a Smad binding domain peptide selected from the group consisting of (a) SASSQSPNPNNPAEYCST1PPLQQAQASGALSSPPPTVMVPVGV
LKHPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSS; and (b) amino acids 589 to 672 of the XSARA1 sequence of Table 9.
The invention includes fragments and variants of these Smad binding domain peptides which retain the ability to bind a Smad protein.
In accordance with a further embodiment, the invention provides peptides which comprise SARA protein FYVE domains and polynucleotides which encode such peptides.
In accordance with a further embodiment, the invention provides a FYVE
domain peptide selected from the group consisting of (a) amino acids 587 to 655 of the hSARAI sequence of Table 9;
(b) amino acids 510 to 578 of the XSARA1 sequence of Table 9; and (c) the consensus amino acid sequence of Table 10.
The invention includes fragments and variants of these FYVE domain peptides which retain the function of the parent peptide.
In accordance with a further embodiment, the invention provides peptides which comprise SARA protein TGF(3 receptor interacting domains and polynucleotides which encode such peptides.
fn accordance with a further embodiment, the invention provides a TGF~i receptor interacting domain peptide comprising amino acids 751 to 1323 of the hSARAI sequence of Table 9.
The invention includes fragments and variants of these TGF~3 receptor binding domain peptides which retain the binding ability of the parent peptide.
The invention further provides methods for modulating signaling by members of the TGF(3 superfamily which signal through pathways which involve a SARA protein.
Modulation of signaling by a TGF~i superfamily member through such a pathway may be effected, for example, by increasing or reducing the binding of the SARA protein involved in the pathway with its binding partner.

WO 00/05360 PC'T/CA99/00656 In accordance with a further embodiment, TGF(3 superfamily signaling, including TGF(3 signaling, by a pathway involving a SARA protein described herein may be modulated by modulating the binding of the SARA protein to a Smad binding partner, by modulating the binding of its FYVE domain to its binding partner or by modulating the binding of the SARA protein to a TGF~3 superfamily receptor, such as the TGF(3 receptor.
For example, the binding of a SARA protein to a Smad binding partner may be inhibited by a deletion mutant of the protein lacking either the SBD
domain or the FYVE domain or by the SARA protein Smad binding domain 10 peptides or FYVE domain peptides described herein, and effective fragments or variants thereof. The binding of a SARA protein to a TGF~3 superfamily receptor may be inhibited by a deletion mutant of the protein lacking a C terminal portion or by the SARA protein TGF~i receptor binding domain peptides described herein, and effective fragments and variants thereof.
15 In accordance with a further embodiment, TGF~3 superfamily signaling, including TGF(3 signaling, by a pathway involving a SARA protein may be modulated by modulating the binding of the SARA protein FYVE domain to phosphatidyl inositol-3-phosphate, by increasing or decreasing the availability of phosphatidyl inositol-3-phosphate or by administration of agonists or antagonists 20 of phosphatidyl inositol-3-phosphate kinase.
The invention also provides a method of modulating a TGF~i superfamily signaling pathway involving phosphatidyl inositol-3-phosphate, including a TGF(3 signaling pathway, by increasing or decreasing the availability of SARA
protein or by modulating the function of SARA protein.
25 The invention further provides methods for preventing or treating diseases characterised by an abnormality in a TGF(3 superfamily member signaling pathway which involves a SARA protein, by modulating signaling in the pathway, as described above.
TGF~3 signaling is important in wound healing, and excessive signaling is 30 associated with scarring, with arthritis and with fibrosis in numerous diseases, including fibrosis of the liver and kidney. TGF~i signaling is also involved in modulating inflammatory and immune responses and can contribute to tumour progression.
The invention thus provides methods for modulating TGF(3-dependent cell proliferation or fibrogenesis.
The BMP signaling pathways are important in tissue morphogenesis and in protecting tissues and restoring or regenerating tissues after tissue damage, for example in bone, kidney, liver and neuronal tissue (see, for example, (Reddy, A.H. (1998), Nature Biotechnology, v. 16, pp. 247-252).
The invention further provides methods for modulating BMP-dependent phenotypic marker expression by modulating the interactions of SARA proteins involved in these BMP signaling pathways.
In accordance with a further embodiment, modified versions of a SARA
protein may be provided as dominant-negatives that block TGF(3 superfamily signaling. These modified versions of SARA could, for example, lack the Smad binding domain and thereby prevent recruitment of Smad or could lack the FYVE
domain and thereby inhibit signaling by interfering with translocation.
These modified versions of SARA may be provided by gene therapy, for example using transducing viral vectors. Expression may be driven by inclusion in the vector of a promoter specific for a selected target cell type. Many examples of such specific promoters are known to those skilled in the art.
In a further embodiment, a normal version of a SARA protein such as hSARAI could be provided by gene therapy to restore function in a disease wherein SARA is mutated or non-functional.
In a further embodiment, the invention provides a pharmaceutical composition comprising a purified SARA protein as active ingredient.
In accordance with a further embodiment, the invention provides non-human transgenic animals and methods for the production of non-human transgenic animals which afford models for further study of the SARA system and tools for screening of candidate compounds as therapeutics. For example, knock out animals, such as mice, may be produced with deletion of a SARA gene.

These animals may be examined for phenotypic changes and used to screen candidate compounds for effectiveness to reverse these changes.
In a further example, transgenic animals may be produced expressing a dominant negative mutant of a SARA protein, as described above, either 5 generally or in specific targeted tissues.
The invention provides many targets for the development of small molecule drugs, including peptides and peptidomimetic drugs, to interfere with the interaction of the various binding partners described herein and thereby modulate signaling by members of the TGF~i superfamily, including TGF~ and 10 BMPs The invention further provides methods for screening candidate compounds to identify those able to modulate signaling by a member of the TGF~i superfamily through a pathway involving a SARA protein.
For example, the invention provides screening methods for compounds able to bind to a SARA protein which are therefore candidates for modifying the activity of the SARA protein. Various suitable screening methods are known to those in the art, including immobilization of a SARA protein on a substrate and exposure of the bound SARA protein to candidate compounds, followed by elution of compounds which have bound to the SARA protein. The methods used to characterise the binding interactions of the SARA proteins disclosed herein, as fully described in the examples herein, may also be used to screen for compounds which are agonists or antagonists of the binding of a SARA protein.
This invention also provides methods of screening for compounds which modulate TGF(3 superfamily signaling by detecting an alteration in the phosphorylation state of a SARA protein.
In accordance with a further embodiment, the invention provides a method for reducing or preventing TGF~3, activin or BMP signaling by inhibiting the activity of SARA. SARA activity may be inhibited by use of an antisense sequence to the SARA gene or by mutation of the SARA gene.

Summary of the Drawings Certain embodiments of the invention are described, reference being made to the accompanying drawings, wherein:
Figure 1 (top panel) shows interaction of full length hSARAI with bacterially expressed Smads. Full length SARA protein was produced in an in vitro transcription/translation system in the presence of [35S]methionine and was incubated with glutathione-sepharose beads coated with bacterially-expressed GST fusion proteins of the indicated Smads or Smad2 subdomains. Bound material was resolved by SDS-PAGE and visualized by autoradiography.
Migration of full length hSARAI, and a translation product that initiates from an internal methionine located upstream of the Smad binding domain (asterisk) are indicated. The presence of approximately equivalent amounts of GST fusion proteins was confirmed by SDS-PAGE and coomassie staining of a protein aliquot (bottom panel).
Figure 2 shows interaction of hSARA with Smads in mammalian cells.
COS cells were transfected with Flag-tagged hSARAI (Flag-SARA) either alone or together with the indicated Myc-tagged Smad constructs. For Smad6, an alternative version lacking the MH 1 domain was used (Topper et al., 1997).
Cell lysates were subjected to an anti-Flag immunoprecipitation and coprecipitating Smads detected by immunoblotting with anti-Myc antibodies. The migration of anti-Flag heavy and light chains (IgG) are marked. To confirm efficient expression of hSARAI and the Smads, aliquots of total cell lysates were immunoblotted with the anti-Flag and anti-Myc antibodies (bottom panel). The migrations of hSARAI and the Smads are indicated.
Figures 3-6 show immunoblots of lysates from COS cells transiently transfected with various combinations of Flag or Myc-tagged hSARAI, wild type (WT) or mutant (2SA) Myc or Flag-tagged Smad2, Smad4/HA and wild type (WT) or constitutively active (A) T(3R1/HA, cell lysates being subjected to immunoprecipitation with anti-Flag or anti-Myc antibodies, as indicated.
Confirmation of protein expression was performed by immunoblotting total cell lysates prepared in parallel for the indicated tagged protein (totals, bottom panels).
Figure 3: Transfected cells were metabolically labelled with [3zP]PO4 and cell lysates subjected to immunoprecipitation with anti-Flag antibodies for visualization of hSARAI phosphorylation (top panel) or with anti-Myc antibodies for Smad2 phosphorylation (middle panel). Immunoprecipitates were resolved by SDS-PAGE and visualized by autoradiography. The migrations of hSARAI
and Smad2 are indicated.
Figure 4: Lysates from transiently transfected COS cells were subjected to immunoprecipitation with anti-Flag antibodies and Smad2 bound to hSARAI
was analyzed by immunoblotting with anti-Myc antibodies (IP: a-flag; blot: a-Myc).
Figure 5: Lysates from transiently transfected COS cells were subjected to immunoprecipitation with anti-Flag antibodies and Smad2 bound to hSARAI
was analyzed by immunoblotting with anti-Myc antibodies (IP: a-flag, blot: a-Myc). Partial dissociation of hSARAI/Smad2 complexes induced by TGF(3 signaling was enhanced by expression of Smad4.
Figure 6: Cell lysates from transiently transfected COS cells were subjected to immunoprecipitation with anti-Fiag antibodies directed towards Smad2. Immunoprecipitates were then immunobfotted using anti-Myc or anti-HA antibodies which recognize hSARAI or Smad4, respectively.
Coprecipitating SARA (a-myc blot) and Smad4 (a-HA blot) are indicated.
Figure 7, panels A to E, shows photomicrographs of Mv1 Lu cells transiently transfected with various combinations of Flag-Smad2, Myc-hSARAI, and constitutively active T~iRI (T(3R1*) as indicated (Tx). hSARA was visualized with the polycfonal Myc A14 antibody and Texas-Red conjugated goat-anti-rabbit IgG (red) and Smad2 was detected with an anti-Ffag M2 monoclonal antibody followed by FITC-conjugated goat anti-mouse IgG (green). The subcellular localization of the expressed proteins was visualized by immunofiuorescence and confocal microscopy.

Panels A, B, C, Mv1 Lu cells singly transfected with hSARA1 (A) or Smad2 (B) are shown. Cotransfection of Smad2 with the constitutively active T~iRI
(T(3R1*) results in its accumulation in the nucleus (C).
Panel D, Mv1 Lu cells were transfected with hSARAI and Smad2 and the localization of hSARAI (red, left photo) and Smad2 (green, centre photo) is shown. Colocalization of SARA and Smad2 is shown (right photo) and appears as yellow.
Pane) E, Mv1 Lu cells were transfected with hSARAI, Smad2 and activated T~iRI (T(3R1*) and the localization of hSARA (red, left photo) and Smad2 (green, centre photo) is shown. Colocalization of SARA and Smad2 is indicated (right photo). Note the shift to an orangy-red colour in the punctate spots and an intensification of Smad2 nuclear staining, indicative of dissociation of Smad2 from SARA and nuclear translocation.
Figure 7, panel F, shows photomicrographs of Mv1 Lu cells stained with rabbit, polyclonal anti-SARA antibody (left photo, green), goat, polyclonal anti-Smad 2/3 antibody (centre photo, red) and with both antibodies (right photo, yellow), showing co-localization of hSARAI and Smad2.
Figure 8A shows photomicrographs of Mv1 Lu cells transfected with either hSARAI alone (panel i), T[3R11 alone (panel ii) or hSARAI and T(3R11 together (panel iii), then treated with TGF(3 and the localization of hSARAI (red) and T~iRll (green) determined by immunofluorescence and confocal microscopy. In cells coexpressing hSARAI and T~iRll, superimposing the staining revealed colocalization of the proteins as indicated by yellow staining in panel iii.
Figure 8B shows affinity labelling of COS cells transiently transfected with various combinations of Flag-hSARAI, Myc-Smad2, wild type (WT) T~iRll and either wild type or kinase-deficient (KR) versions of T~3R1. Cells were affinity-labelled with ['zSIJTGF~3 and lysates immunoprecipitated with anti-Flag antibodies. Coprecipitating receptor complexes were visualized by SDS-PAGE
and autoradiography. Equivalent receptor expression was confirmed by visualizing aliquots of total cell lysates (bottom panel).

Figure 9A shows COS cells transiently transfected with wild type T(3R11 and kinase-deficient T(3R1 and various combinations of wild type Flag-hSARAI
(WT), a mutant version lacking the Smad2 binding domain (~SBD) and Myc-Smad2. The amount of receptor bound to SARA was determined by anti-Flag immunoprecipitation followed by gamma counting. Data is plotted as the average of three experiments ~ S.D. Protein expression was analyzed by immunoblotting aliquots of total cell lysates and the results from a representative experiment are shown (bottom panel).
Figure 9B shows COS cells transiently transfected with wild type T~3R11 and kinase-deficient T~iRI and Flag-tagged wild type (WT) or mutant versions of hSARAI with (black bars) or without (open bars) Myc-Smad2. The amount of receptor bound to hSARAI was determined by anti-Flag immunoprecipitation followed by gamma counting. Protein expression was analyzed by immunoblotting aliquots of total cell lysates (bottom panel).
Figure 10 is a schematic representation of mutant versions of SARA. The FYVE domain (shaded bar) and the Smad binding domain, SBD (striped bar), are indicated. COS cells transiently transfected with Fiag-hSARAI and Myc-Smad2 were immunoprecipitated with anti-Flag antibodies followed by immunoblotting with anti-Myc antibodies. The presence (+) or absence (-) of a hSARAI/Smad2 interaction is indicated (Smad2 interaction). Mutants used for the subsequent localization study are marked on the left (i-vi).
Figure 11 A shows an immunoblot of lysates from COS cells expressing Flag-tagged Smad2 or Smad3 incubated with GST alone or with GST-hSARAI
(665-750), which corresponds to the SBD; bound proteins were immunoblotted using anti-Flag antibodies. The presence of Smad2 and Smad3 bound to GST-hSARAI (665-750) is indicated.
Figure 11 B shows an immunoblot of lysates, from COS cells expressing Flag-tagged Smad2 together with wild type (WT) or activated (A) type I
receptor, incubated with GST-hSARAI (665-750) (GST-SBD) and immunoblotted with anti-Flag antibodies. The expression levels of Smad2, each receptor and GST-WO 00/05360 PC1'/CA99/00656 hSARAI (665-750) were determined by immunoblotting aliquots of total cell lysates.
Figure 12 shows the subcellular localization of hSARAI mutants. Mv1 Lu cells were transiently transfected with wild type (panel i) or mutant versions of 5 Flag-hSARAI (panels ii-viii, as marked on the left in Figure 10). Proteins were visualized by immunofluorescence and confocal microscopy using a monoclonal anti-Fiag M2 monoclonal antibody followed by FITC-conjugated goat anti-mouse IgG.
Figure 13 shows photomicrographs of Mv1 Lu cells transiently transfected 10 with mutant versions of Myc-hSARAI and Flag-Smad2 (panel A) or with wild type Myc-hSARAI, HA-Smad2 and mutant versions of hSARAI (panel B).
Protein subcelfular localization was visualized by immunofluorescence and confocal microscopy. hSARAI was visualized with the polyclonal Myc A14 antibody and FITC-conjugated goat anti-rabbit IgG (green), while Smad2 was 15 detected with monoclonal antibodies followed by Texas Red-conjugated goat anti-mouse IgG (red). In B, overlaying the images reveals mislocalization of Smad2 as green speckles of SARA over red, diffuse Smad2 staining (panels ii and iii) and colocalization of hSARAI and Smad2 appears as yellow spots (panels i and iv).
Figure 14 shows luciferase activity of Mv1 Lu cells transfected with 3TP-lux alone or together with the indicated amounts of wild type (WT) or mutant (01-664 or D1-704) versions of hSARAI and incubated in the presence (black bars) or absence (open bars) of TGF~i. Luciferase activity was normalized to ~3-galactosidase activity and is plotted as the mean ~S.D. of triplicates from a representative experiment.
Figure 15 shows luciferase activity of HepG2 cells transfected with ARE-Lux alone (v), or ARE-Lux and FAST2 alone or together with the indicated amounts of wild type (WT) or mutant versions of hSARAI. Transfected cells were incubated in the presence (black bars) or absence (open bars) of TGF(3 and luciferase activity was normalized to (3-galactosidase activity and is plotted as the mean ~S.D. of triplicates from a representative experiment.

Figure 16 shows a Northern blot of expression of hSARAI (upper panel) and Smad2 (lower panel) in the indicated tissues.
Figure i 7 shows an immunoblot of a HepG2 iysate immunoprecipitated (IP) with preimmune serum (PI), anti-hSARAI polyclonal antibody (SARA) with and without pretreatment with TGF~i (- and +), or N19 anti-Smad2/3 antibody (S2), followed by immunoblotting with an anti-Smad2 antibody. The migration position of Smad2 is indicated (Smad2).
Figure 18 shows a diagram of a model of the interaction of a SARA
protein with a receptor regulated Smad, as exemplified by the interaction of hSARAI.
Detailed Description of the Invention This invention provides a family of proteins that play key roles in TGF-(3, activin and bone morphogenetic protein (BMP) signal transduction pathways. In particular, the proteins of this family interact with specific Smad proteins to modulate signal transduction. These proteins are therefore designated as "Smad Anchor for Receptor Activation" or "SARA" proteins. SARA proteins are characterised by three distinct domains (1) a double zinc finger or FYVE
domain responsible for the subcellular localization of the SARA protein or SARA-Smad complex, possibly through its association with Ptdlns(3)P, (2) a Smad binding domain ("SBD") which mediates the interaction or binding of one or more species of Smad protein with the particular member of the SARA family and (3) a carboxy terminal domain which mediates interaction of SARA with members of the TGF(3 superfamily of receptors.
FYVE domains have been identified in a number of unrelated signaling molecules that include FGD1, a putative guanine exchange factor for Rho/Rac that is mutated in faciogential dysplasia, the HGF receptor substrate Hrs-1 and its homolog Hrs-2, EEA1, a protein involved in formation of the early endosome and the yeast proteins FAB1, VPS27 and VAC1 (reviewed in Wiedemann and Cockcroft, 1998). Recently, analysis of a number of FYVE domains from yeast and mammals has revealed that this motif binds phosphatidyl inositol-3 phosphate (Ptdins(3)P) with high specificity and thus represents a novel signaling module that can mediate protein interaction with membranes (Burd and Emr, 1998; Gaullier et al., 1998; Patki et al., 1998; Simonsen et al., 1998;
Wiedemann and Cockcroft, 1998). Comparison of the FYVE domains from the vertebrate proteins with that from SARA revealed extensive conservation of residues throughout the domain (Table 10). Thus, SARA contains a FYVE
domain that may function to bind Ptdlns(3)P, which has been implicated in intracellular vesicle transport.
For example, deletion of the FYVE domain in hSARAI causes mislocalization of Smad2 or Smad3, interferes with TGF(3 receptor interaction and inhibits TGF(3-dependent transcriptional responses.
Thus, the SARA proteins of the invention define a component of TGF~
superfamily signaling that fulfills an essential role in anchoring receptor regulated Smads to specific subcellular domains for activation by a TGF/3 superfamily receptor.
Cloned DNA coding sequences and corresponding amino acid sequences for representative human and Xenopus SARA protein family members are shown in the Tables, as follows:
Tables 1 and 2 - human SARA1 (hSARAI) cDNA (Sequence ID N0:1) and amino acid sequence (Sequence ID N0:2) respectively;
Tables 3 and 4 - human SARA2 (hSARA2) cDNA (Sequence ID N0:3) and amino acid sequence (Sequence ID N0:4) respectively;
Tables 5 and 6 - Xenopus SARA1 (XSARAi ) cDNA (Sequence ID NO:S) and amino acid sequence (Sequence ID N0:6) respectively; and Tables 7 and 8 - Xenopus SARA2 (XSARA2) cDNA (Sequence ID N0:7) and amino acid sequence (Sequence ID N0:8) respectively.
Table 9 shows a comparison of the amino acid sequences of XSARA1 and hSARAI . Identical residues (dark grey) and conservative changes (fight grey), the FYVE domain (solid underline) and the Smad binding domain (dashed underline) are indicated. The sequences in XSARA1 used to design degenerate PCR primers for identifying hSARAI are shown (arrows). The amino-terminal end of the partial Xenopus cDNA obtained in the expression screen is marked (asterisk).
The human SARA of Tables 1 and 2, identified as described in Example 2, regulates the subcellular localization of Smad2 and Smad3 and recruits these Smads into distinct subcellular domains. This SARA also interacts with TGF~i receptors and TGF(3 signaling induces dissociation of Smad2 or Smad3 from the SARA protein with concomitant formation of Smad2/Smad4 complexes and nuclear translocation.
Table 10 shows alignment of the amino acid sequences of the FYVE
domains from hSARAI, XSARA1, KIAA0305, FGD1, Hrs-1, Hrs-2 and EEA1.
Identical residues (dark grey) and conservative changes (light grey) are marked.
A consensus sequence (bottom) was derived from positions in which at least 6 out of 7 residues were conserved or when proteins contained one of only two alternate residues.
The regulation of the subcelluiar localization of components of signaling pathways can be key determinants in the effective initiation and maintenance of signaling cascades. Targeting of signal transduction proteins to specific subcellular regions is highly regulated, often through specific interactions with scaffolding or anchoring proteins (Faux and Scott, 1996; Pawson and Scott, 1997). Scaffolding proteins have been defined as proteins that bind to multiple kinases to coordinate the assembly of a cascade, while anchoring proteins are tethered to specific subcellular regions in the cell and can act to bring together components of a pathway. Regulating location of signaling components can thus coordinate the activity of a signaling network, maintain signaling specificity or facilitate activation of a pathway by localizing kinases together with their downstream substrates.
As described herein, a recombinantly produced human SARA protein bound directly and specifically to unphosphorylated Smad2 and Smad3. In addition, receptor-dependent phosphorylation induced Smad2 to dissociate from SARA, bind to Smad4 and translocate to the nucleus. Thus, the hSARAI protein functions in TGF(3 signaling upstream of Smad activation to recruit Smad2 to the WO 00/05360 PCTlCA99/00656 TGF~3 receptor by mediating the specific subcellular localization of Smad and by associating with the TGF~i receptor complex. Furthermore, inducing mislocalization of Smad2 by expressing a mutant of the hSARAI protein blocks TGF(3-dependent transcriptional responses, indicating an essential role for SARA-mediated localization of Smads in signaling. Together, these results identify the cloned hSARAI protein as a novel component of the TGF~i pathway that functions to anchor Smad2 to specific subcellular sites for activation by the TGF~i receptor kinase.
In vitro, receptor-regulated Smads are recognized by the receptor kinases and are phosphorylated on the C-terminal SSXS motif (Abdollah et al., 1997;
Kretzschmar et al., 1997; Macias-Silva et al., 1996; Souchelnytskyi et al., 1997).
This phosphorylation is similar to receptor-dependent phosphorylation in mammalian cells, suggesting that SARA is not absolutely required for recognition of Smads by the receptor complex. In intact cells, however, receptor-regulated Smads are cytosolic proteins that require activation by transmembrane serine/threonine kinase receptors. Consequently, Smads may require recruitment by SARA to interact with TGF~i superfamiiy receptors. Domains in which SARA is found correspond to regions where TGF~i receptors are also localised. TGF~i receptors display regionalized localization and hSARAI
recruits Smad2 to these domains. The identity of these intracellular domains is unclear.
However, they contain receptors and recent evidence has shown that FYVE
finger domains interact with membranes, so it is reasonable to suggest that these domains represent membrane vesicles. Thus, clustering of the TGF(3 receptor, as previously described by Henis et al. (1994), may function to direct the receptor to hSARAI and the Smad2 substrate. This activity may be most critical in vivo, where serlthr kinase receptors are often found in low numbers and only a small proportion need to be activated for biological responses (Dyson and Gurdoh, 1998). This activity is likely to be most critical in vivo, where ser/thr kinase receptors are often found in low numbers and only a small proportion need to be activated for biological responses (Dyson and Gurdon, 1998). This may impose on the pathway a stringent requirement for SARA to anchor Smads in these sites for receptor interaction.
The colocalization and association of hSARAI with the TGF~i receptor defines a role for hSARAI in recruiting Smad2 to the receptor kinase.
5 Furthermore, deletion of the FYVE domain interferes with receptor binding, prevents the correct localization of hSARAI/Smad2 and blocks TGF~i signaling _ (see Example 8 below), suggesting that this is an important function in the pathway. Interestingly, the binding of the hSARAI protein identified in Example 2 to the receptor was enhanced upon Smad2 expression and, on its own, SARA
10 may interact inefficiently with the receptor. However, within the hSARAI/Smad complex, Smad2 might help drive association with the receptor through its recognition of the catalytic region of the kinase domain. Consistent with this, cooperation requires a kinase deficient type I receptor which also traps the Smad2 substrate (Macias-Silva et al., 1996). Thus, Smad2 may bind to the 15 catalytic pocket of the type 1 kinase domain while hSARAI, which is not a substrate of the kinase, may interact with regions outside of the domain.
The human SARA protein identified in Example 2 did not interact with any of the other Smads tested, indicating that it functions specifically in Smad2 and Smad3 pathways (see Example 3). However, SmadS localization in 293 20 cells displayed a remarkably similar pattern to that of this SARA protein (Nishimura et al., 1998) and similar patterns were observed for endogenous Smad1 or 5 in the kidney epithelial cell line, IMCD-3. Thus, localization of BMP-regulated Smads (for example, Smadl, SmadS and SmadB) may also be regulated by a specific SARA family member.
The genes for two other SARA family member proteins were also identified and cloned. One of these, identified in Xenopus and designated XSARA2 (Tables 7 and 8), is related to XSARA 1, while the other one, hSARA2 (Tables 3 and 4), is a human clone, related to the hSARA 1 of Tables 1 and 2.
This second human clone has been identified in EST clone KIAA0305. A
comparison of the SBD from hSARAI with a similar region from the KIAA0305 sequence indicated that the amino terminal half of the region of the SBD was highly divergent from the amino acid sequence encoded by KIAA0305. This suggests that the protein encoded by KIAA0305 may mediate binding with other as yet unidentified proteins, eg. other Smads. In contrast to the SBD, the FYVE
domain of the KIAA0305 protein is more closely related to the hSARAI FYVE
5 domain (70% identity), suggesting that this protein may be an anchor for other Smad proteins that function either in the TGF(3 pathway or in other signaling cascades, such as the BMP signal transduction pathway.
SARA is not limiting in Smad activation and TGF~i superfamily signaling 10 It was observed that elevating Smad2 levels can saturate hSARAI and yield a diffuse distribution for Smad2. Thus, the level of the hSARAI protein is a key determinant in controlling Smad2 localization. As a consequence, endogenous Smad2 may or may not display a hSARAI-like distribution, depending on the relative expression of the two proteins. Indeed, in Mv1 Lu 15 cells, endogenous Smad2 displays a punctate pattern with some diffuse staining in the cytosol. While not meaning to limit the invention to a particular mechanism, the data are consistent with the view that once signaling has commenced, Smad2 dissociates from hSARAI, binds to Smad4 and translocates to the nucleus, freeing hSARAI to recruit additional Smad2 from the cytosolic 20 reservoir. This would provide a mechanism to allow quantitative activation of Smads in the presence of high levels of TGF~3 signaling.
By functioning to recruit Smad2 to the TGF(3 receptor, hSARAI is located in an important regulatory position in the pathway. Thus, control of hSARAI
localization or protein levels, or its interaction with Smad2, could modulate 25 TGF~i signaling. Further, disruption of normal hSARAI function could potentially be involved in loss of TGF~ responsiveness that is a common feature during tumour progression.
Modular Domains in SARA
30 The function of hSARAI in TGF~i signaling is mediated by three independent domains, the Smad binding domain (SBD) that mediates specific interaction with Smad2 and Smad3, the FYVE domain that targets hSARAI/Smad2 to specific subcellular sites and the carboxy terminus which mediates association with the TGF~i receptor. The Xenopus and mouse forkhead-containing DNA binding proteins, FAST1 and FAST2, bind specifically S to Smad2 and Smad3 and like hSARAI, interact with the MH2 domains (Chen et al., 1996; Chen et al., 1997a; Labbe et al., 1998; Liu et al., 1997a).
Comparison of the SBD from this SARA with the Smad Interaction Domain (SID) from these FAST proteins revealed no regions of obvious similarity. However, since hSARAI acts upstream and FAST downstream of Smad activation, these proteins may employ structurally unrelated domains to distinguish unactivated versus activated forms of Smad2. Thus, the SBD of this SARA protein preferentially binds unphosphorylated monomeric Smad2 while the SID from FAST must bind phosphoryiated Smad2 in heteromeric complexes with Smad4.
By analogy, the SBD of other SARA family members may bind the 15 unphosphorylated monomeric species of other Smads that mediate signal transduction in other pathways (eg. Smads 1, 5 or 8 in the BMP signal transduction pathway).
In hSARAI, the FYVE domain functions independently of the SBD, to mediate the subcellular targetting of the protein. The FYVE-finger motif has now been identified in at least 30 proteins from diverse species, such as FGD1, Hrs-1 and 2, and EEA1 (Gaullier et al., 1998; V~/iedemann and Cockcroft, 1998).
Recent advances have demonstrated that FYVE finger motifs from a variety of divergent proteins have a conserved function and bind phosphatidyl inositol-3-phosphate (Ptdlns(3)P) with high specificity (Burd et al., (1998); Patki (1998);
Gaullier (1998)). Through this interaction, the FYVE finger can mediate protein interactions with phospholipid bilayers. However, Ptdlns(3)P is present ubiquitously on cell membranes and in the case of EEA1, further protein-protein interactions with RabS-GTP are required in addition to the FYVE domain to target the protein to the correct membranes (Simonsen et al., 1998). Given that Ptdlns(3)P binding by FYVE fingers is conserved in yeast and mammals, it is likely that the FYVE finger of hSARAI similarly mediates interaction with the membrane. Furthermore, it is possible that additional protein-protein interactions may be required to direct hSARAI to regions that contain the TGF~3 receptors. The carboxy terminus of hSARAI, which is required for efficient interaction with the TGF(3 receptor, may function in this capacity.
Together, these data define discrete domains in SARA that fulfill specific aspects of SARA function in TGF~i superfamily signaling. ~Nithout being limited to any particular mechanism, a possible model of the interaction of SARA with a receptor regulated Smad in TGF~3 superfamily signaling, as exemplified by hSARAI and its interactions with Smad2 in TGF~3 signaling, is shown diagrammatically in Figure 18. The FYVE domain likely functions to direct SARA
to the membrane, perhaps through interactions with Ptlns(3)P. It thus fulfills an important role in recruiting hSARAI to specific subcellular domains that have been shown also to contain the TGF(3 receptor. The SBD in turn functions to bind unactivated Smad2, thus recruiting the receptor substrate to this subcellular 15 region. Once localized to this region, the C-terminal domain of hSARAI
functions with Smad2 bound to the SBD to promote interaction with the receptor complex. These three domains thus function cooperatively to recruit Smad2 to the TGF~3 receptor.
Additional Roles for SARA
Controlling the localization of kinases and their substrates may allow not only for efficient recognition and phosphorylation but may also function to maintain specificity and suppress crosstalk between signaling pathways. Thus, by controlling Smad localization, a SARA family member protein could additionally function to maintain the highly specific regulation of Smad phosphorylation by ser/thr kinase receptors that is observed in vivo and could prevent promiscuous phosphorylation by other kinases in the cell. Furthermore, through its interactions with a particular receptor, a SARA protein might function to control the activity or turnover of the receptor complex. Alternatively, SARA
may also fulfill scaffolding functions to coordinate the receptor-dependent activation of Smads with other as yet unidentified components of a signaling pathway.
Nucleic Acids 5 In accordance with one series of embodiments, the present invention provides isolated nucleic acids corresponding to, or related to, the human and Xenopus SARA nucleic acid sequences disclosed herein. In addition to the SARA nucleotide sequences disclosed herein, one of ordinary skill in the art is now enabled to identify and isolate homologues of the SARA genes described 10 herein. One of ordinary skill in the art may screen preparations of genomic or cDNA from other species using probes or PCR primers derived from nucleotide sequences disclosed herein. In accordance with a further embodiment, the invention provides isolated nucleic acids of at least 10 consecutive nucleotides, preferably 15 consecutive nucleotides, more preferably 20 consecutive 15 nucleotides of Sequences ID N0:1, Sequence ID N0:3, Sequence ID N0:5 and Sequence ID N0:7, up to the complete sequences. Short stretches of nucleotide sequence are useful as probes or primers useful for identification or amplification of the nucleic acids of the invention or for encoding fragments, functional domains or antigenic determinants of SARA proteins.
20 The invention also includes polynucleotides which are complementary to the disclosed sequences, poiynucleotides which hybridise to these sequences at high stringency and degeneracy equivalents of these sequences.
Proteins 25 SARA proteins may be produced by culturing a host cell transformed with a DNA sequence encoding a selected SARA protein. The DNA sequence is operatively linked to an expression control sequence in a recombinant vector so that the protein may be expressed.
Host cells which may be transfected with the vectors of the invention 30 may be selected from the group consisting of E. toll, Pseudomonas, Bacillus WO 00!05360 PCT/CA99/00656 subtillus, or other bacilli, yeasts, fungi, insect cells or mammalian cells including human cells.
For transformation of a mammalian cell for expression of a SARA protein, the vector may be delivered to the cells by a suitable vehicle. Such vehicles including vaccinia virus, adenovirus, retrovirus, Herpes simplex virus and other vector systems known to those of skill in the art.
A SARA protein may also be recombinantly expressed as a fusion protein.
For example, the SARA cDNA sequence is inserted into a vector which contains a nucleotide sequence encoding another peptide (e.g. GST-glutathione succinyl transferase). The fusion protein is expressed and recovered from prokaryotic (e.g. bacterial or baculovirus) or eukaryotic cells. The fusion protein can then be purified by affinity chromatography based upon the fusion vector sequence and the SARA protein obtained by enzymatic cleavage of the fusion protein.
The protein may also be produced by conventional chemical synthetic methods, as understood by those skilled in the art.
SARA proteins may also be isolated from cells or tissues, including mammalian cells or tissues, in which the protein is normally expressed.
The protein may be purified by conventional purification methods known to those in the art, such as chromatography methods, high performance liquid chromatography methods or precipitation.
For example, anti-SARA antibodies may be used to isolate SARA protein which is then purified by standard methods.
Antibodies The provision of the polynucleotide and amino acid sequences of SARA
proteins provides for the production of antibodies which bind selectively to a SARA protein or to fragments thereof. The term "antibodies" includes poiyclonal antibodies, monoclonal antibodies, single chain antibodies and fragments thereof such as Fab fragments.
30 In order to prepare polyclonal antibodies, fusion proteins containing defined portions or all of a SARA protein can be synthesized in bacteria by expression of the corresponding DNA sequences, as described above. Fusion proteins are commonly used as a source of antigen for producing antibodies.
Alternatively, the protein may be isolated and purified from the recombinant expression culture and used as source of antigen. Either the entire protein or fragments thereof can be used as a source of antigen to produce antibodies.
The purified protein is mixed with Freund's adjuvant and injected into rabbits or other appropriate laboratory animals. Following booster injections at weekly intervals, the animals are then bled and the serum isolated. The serum may be used directly or purified by various methods including affinity chromatography to give polyclonal antibodies.
Alternatively, synthetic peptides can be made corresponding to antigenic portions of a SARA protein and these may be used to inoculate the animals.
In a further embodiment, monoclonal anti-SARA antibodies may be produced by methods well known in the art. Briefly, the purified protein or fragment thereof is injected in Freund's adjuvant into mice over a suitable period of time, spleen cells are harvested and these are fused with a permanently growing myeloma partner and the resultant hybridomas are screened to identify cells producing the desired antibody. Suitable methods for antibody preparation may be found in standard texts such as Antibody Engineering, 2d. edition, Barreback, ED., Oxford University Press, (1995).
Trans~enic animals in accordance with a further embodiment, the invention provides for the production of transgenic non-human animals which afford models for further study of the SARA family of proteins and also provide tools for the screening of the candidate compounds as therapeutics.
Animal species which are suitable for use include rats, mice, hamsters, guinea pigs, rabbits, dogs, cats, goats, sheep, pigs and non-human primates.
in accordance with one embodiment, a transgenic animal may be prepared carrying a heterologous SARA gene by inserting the gene into a germ line or stem cell using standard technique of oocyte microinjection, or transfection or microinjection into embryonic stem cells. The techniques of generating transgenic animals are now well known and fully described in the literature. For example, a laboratory manual in the manipulation of the mouse embryo describes standard laboratory techniques for the production of transgenic mice (Hogan et al. (1986), Manipulating the Mouse Embryo, Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York).
In accordance with a further embodiment, the invention enables the inactivation or replacement of an endogenous SARA gene in an animal by homologous recombination. Such techniques are also fully described in the literature. Such techniques produce "knock-out" animals, with an inactivated gene, or "knock-in" animals, with a replaced gene.
EXAMPLES
The examples are described for the purposes of illustration and are not intended to Limit in any way the scope of the invention.
Methods of molecular genetics, protein and peptide biochemistry and immunology referred to but not explicitly described in this disclosure and examples are reported in the scientific literature and are well known to those ski I led i n the art.
Example 1: Methods Isolation of Xenopus and human SARA
To prepare a probe for library screening, the MH2 domain of Smad2 (amino acids 241-467) was subcloned into a modified pGEX4T-1 vector containing the protein kinase A recognition site derived from pGEX2TK
(Pharmacia). This bacterial fusion protein was purified, labelled with [3zP]YATP
and used as probe to screen a ,ZAP II Xenopus dorsal lip library as described (Chen and Sudol, 1995). A screen of 1 x 10~ plaques yielded four phage which represented repeated isolates of the same clone. This partial cDNA contained a 2.i kb open reading frame and 1 kb of 3' untranslated region (UTR). A full length clone was obtained by a combination of rescreening of the same dorsal lip library using a 670 base pair EcoRl/Hpal fragment at the 5' end of this clone and by 5' RACE (Gibco/BRU using stage 10 Xenopus RNA.
To obtain a human homolog of Xenopus SARA, cDNA was synthesized from randomly primed total RNA isolated from HepG2 cells. This cDNA was subjected to polymerase chain reaction (PCR) using degenerate primers as described previously (Attisano et al., 1992). The 5' and 3' primers, designed to encode the zinc-finger motif, correspond to GC(A/C/GITnCC(A/C/G/T)AA(CmTG(C/TATGAA(A/C/G/T)TG(C/T) and (A/G)CA(A/G)TA(C/T)TC(A/CJG/T)GC(A/C/G/T)GG(A/G)TT(A/G)TT, respectively.
A 150 base pair PCR product was sequenced and then used as probe for screening a 7LZAP human fetal brain cDNA library (Stratagene). Eight positive plaques were obtained, two of which contained an overlap of approximately 1 kb and covered the entire open reading frame. The sequence of the 5' UTR was confirmed by sequencing of an expressed sequence tag database clone (clone ID
260739).
Construction of Plasmids For mammalian expression constructs of SARA, the open reading frame of hSARA was amplified by PCR and was subcloned into pCMVS in frame with an amino-terminal Flag or Myc tag (Hoodless et al., 1996). The deletion mutants of pCMVS-Flag-hSara0893-1323, 0346-132, 0893-1323, and 0346-1323 were constructed by deletion of EcoRV-Hindlll, Xbal-Hindlll, Sall-EcoRV, and Sall-Xbal fragments, respectively. PCMVS-Flag-hSara01-594 and 01-686 were obtained by partial digestion with Asp718/Sall and for pCMVS-Flag-hSARA X665-1323 a Asp718/Hindlll partial digest was used. PCMVS-Flag-hSARA0596-704 was constructed by deleting Asp718 fragment. The other hSARA mutants were constructed by PCR using appropriate primers. PCMVSB-Myc-Smad3 and Myc-Smad6, pGEX4T-1-Smad2/MH1 (amino acids 1-181), pGEX4T-1-Smad2/linker (amino acids 186-273), pGEX4T-1-Smad2/MH2 (amino acids 241-467) and pGEX4T-1-h SARA (amino acids 665-750) were constructed by PCR.

In Vitro Protein Interactions In vitro transcription/translation reactions were performed using the TNT
coupled reticulocyte lysate system (Promega) following the manufacturer's instructions using T3 RNA poiymerase. Translation was carried out in the presence of [35S]-methionine and labelled proteins were incubated with purified GST fusion proteins in TNTE buffer with 10% glycerol for 2 hours at 4°C and then washed five times with the same buffer. Bound protein was separated by SDS-PAGE and visualized by autoradiography.
Immunoprecipitation and Immunoblotting COS-1 cells transfected with LipofectAMINE (GIBCO BRL) were lysed with lysis buffer (Wrana et al., 1994) and subjected to immunoprecipitation with either anti-Flag M2 (IBI, Eastern Kodak) or anti-Myc (9E10) monoclonal antibody followed by adsorption to protein-G sepharose. Precipitates were separated by SDS-PAGE, transferred to nitrocellulose membranes and immunoblotted as described previously (Hoodless et al., 1996).
Affinity-Labelling LipofectAMINE transfected COS-1 cells were incubated with 200 pM
['zSIJTGF(3 in media containing 0.2% bovine fetal serum at 37°C for 30 minutes and receptors were cross-linked to ligand with DSS as described previously (Macias-Silva et al., 1996). Cell fysates were immunoprecipitated with anti-Flag antibody and receptors visualized by SDS-PAGE and autoradiography. in some cases, cross-linked ['251]TGF(3 was determined by gamma counting.
Subcellular Localization by Immunofluorescent Confocal Microscopy Mv1 Lu cells, plated on gelatin-coated Permanox chamber slides (Nunc), were transfected by the calcium phosphate-DNA precipitation method. Fixation, permeabilisation and reaction with the primary and secondary antibodies were described previously (Hoodless et al., 1996). Monoclonal anti-Flag antibodies were visualized by FITC-conjugated goat anti-mouse IgG (Jackson Laboratories) yV0 00/05360 PCT/CA99/00656 and polyclonal Myc antibody (A14, Santa Cruz) was visualized with Texas-Red-conjugated goat anti-rabbit IgG (Jackson Laboratories). Immunofluorescence was analyzed on a Leica confocal microscope.
Transcriptional Response Assay Mv1 Lu cells were transiently transfected with the reporter plasmid, p3TP-lux (Wrana et al., 1992), CMV-(3gal and selected constructs using calcium phosphate transfection. Twenty-four hours after transfection, cells were incubated overnight with or without SO pM TGF[i. Luciferase activity was measured using the luciferase assay system (Promega) in a Berthold Lumat LB
9501 luminometer and was normalized to [i-galactosidase activity.
Examale 2 - Identification of SARA family members The MH2 domain of Smad2 was fused to glutathione-S-transferase (GST) that included a kinase recognition site for protein kinase A (PKA). The bacterially-expressed fusion protein was labelled to high specific activity using PKA (Chen and Sudol, 1995), and then used to screen a 7~ZAP11 expression library prepared from the dorsal blastopore iip of Xenopus. From this screen, four clones were identified, all of which presented a repeated isolate of a partial cDNA clone with no similarity to sequences in the GenBank database. To confirm that the product encoded by this clone interacted with Smad2, an in vitro transcription/transiation system was used to produce [35SJmethionine-labelled protein. Translation of the cDNA yielded a protein product of approximately 80 kDa which corresponded in size to the longest open reading 25 frame (ORF) identified in the sequence. Incubation of this product with bacterially-produced GST-Smad2(MH2) resulted in efficient binding of the translated product to the fusion protein (data not shown). Interaction with full length Smad2 was also observed, whereas binding to bacterially-expressed Smad 1 or Smad4 was not.
To isolate a full length cDNA, the partial clone identified in the interaction screen was used as a probe to rescreen the same blastopore lip library. Since the resulting clones lacked the 5' end, 5' RACE was conducted to obtain the entire coding sequence. Analysis of the complete cDNA sequence (Table 5) revealed a long open reading frame that was contiguous with that of the partial clone. The predicted protein, XSARA1, is 1235 amino acids long with 5 an estimated molecular mass of 135 kDa (Table 6). Analysis of the full length cDNA sequence (Table 9) revealed a region in the middle portion of the predicted protein that had similarity to a double zinc finger domain (recently renamed the FYVE domain; Mu et al., 1995). The FYVE domain has been identified in a number of unrelated signaling molecules that include FGD1, a 10 putative guanine exchange factor for Rho/Rac that is mutated in faciogenital dyspiasia (Pasteris et al., 1994), the HGF receptor substrate Hrs-1 and its homolog Hrs-2 (Bean et al., 1997; Komada and Kitamura, 1995), EEA1, a protein involved in formation of the early endosome (Mu et al., 1995) and the yeast proteins FAB1, VPS27 and VAC1 (Piper et al., 1995; Weisman and Wickner, 1 S 1992; Yamamoto et al., 1995). Comparison of the FYVE domains from the vertebrate proteins with that from SARA revealed extensive conservation of residues throughout the domain (Table 10). Thus, SARA contains a FYVE
domain that may fulfill important functions in diverse proteins.
To investigate the role of SARA in TGF~3 superfamily signaling in 20 mammalian cells, a human homologue was identified. Using a carboxy-terminal portion of XSARA1, a human library was screened and a protein was identified that was distantly related to Xenopus SARA (34°/° identity) and which was also sequenced as an EST (KIAA0305). However, no homologs closer to XSARA
were identified. Thus, degenerate oligonucleotide primers were designed 25 encoding amino acids in XSARA1 (Table 9) and HepG2 RNA was used as template for degenerate PCR. A related sequence was identified and this partial cDNA was used to screen a human brain cDNA library. Four overlapping clones, encoding a long open reading frame were identified and a search of the EST database with this sequence led to the identification of additional 30 overlapping cDNA clones from libraries derived from T cells, uterus, endothelial cells and melanocytes. Analysis of the contiguous sequence revealed a long open reading frame that had a consensus start codon preceded by stop codons in all three reading frames (Table 1). Comparison of the predicted protein hSARAI
(Table 2), from this cDNA with XSARA1 (Table 9) revealed an overall identity of 62%, with a divergent 558 residue amino terminal domain (35°/°
identity) followed by a closely related carboxy terminus (85% identity).
Example 3 - hSARA interacts specificaliy with Smad2 and Smad3 To characterize the interaction of hSARA with Smads, the full length protein was translated in vitro and tested for binding to bacterially-expressed 10 Smad fusion proteins. Similar to the Xenopus clone, hSARAI bound specifically to full length Smad2, but not Smad1 or Smad4 (Figure 1). In addition, full length Smad3, which is highly related to Smad2, also interacted with hSARAI. To define the domains of Smad2 that bound hSARA, in bacteria various fragments of Smad2 corresponding to the MH1 domain, linker region and MH2 domain were 15 expressed in bacteria. Similar to the Xenopus clone, hSARA interacted efficiently with fusion proteins that comprised the MH2 domain, while no association was detected between hSARA and either the MH1 or non-conserved linker domains (Figure 1 ). Thus, hSARAI specifically interacts with Smad2 through the MH2 domain.
20 To confirm that hSARA also bound to Smads in mammalian cells, a Flag epitope tag was introduced at the amino terminus of the protein to create Flag-SARA. Transient expression of Flag- SARA in COS cells yielded a protein of the predicted molecular weight for SARA (Figure 2) that was not present in untransfected cells (data not shown). To investigate the interaction of SARA
with 25 Smads, Flag- SARA was expressed in COS cells together with Myc-tagged versions of Smads 1, 2, 3, 4, 6 and 7. Cell lysates were subjected to anti-Flag immunoprecipitation followed by immunoblotting with anti-Myc antibodies. In other immunoprecipitates of cells expressing either Smad2 or Smad3, efficient coprecipitation of either Smad with Flag- hSARAI was observed (Figure 2). In 30 contrast, none of the other Smads coprecipitated with hSARAI. Specific binding of this SARA family member to both Smad2 and Smad3 is consistent with the observation that these two proteins possess very closely related MH2 domains (97°/° identity) and are both activated by TGF~i or activin type I receptors (Liu et a., 1997b; Macias-Silva et al., 1996; Nakao et al., 1997a). Together, these results demonstrate that this SARA family member is a specific partner for receptor-regulated Smads of the TGF~3/activin signaling pathway.
Example 4- Phosphorytation of Smad2 induces dissociation from SARA
Previous findings have shown that activation of TGF(3 signaling results in phosphorylation of Smad2 or Smad3 by type I receptors on C-terminal serine residues (Liu et al., 1997b; Macias-Silva et al., 1996). A constitutively active TGF~i type I receptor was prepared by substituting a threonine in the GS
domain with an aspartate residue (Wiener et al., 1995). This activated type I
receptor induces TGF(3 signaling in the absence of type II receptors and ligand and regulates the phosphorylation and activation of Smad proteins in a manner similar to ligand (Macias-Siiva et al., 1996; Wiener et al., 1995). COS cells were transfected with combinations of Smad2, hSARAI or both in the presence or absence of activated T~iRI. Cells were then metabolically labelled with [3~P]phosphate and phosphorylation of either hSARAI or Smad2 was assessed in immunoprecipitates. Analysis of SARA phosphorylation revealed that the protein was banally phosphorylated and the coexpression of the activated type I
receptor did not appreciably affect the overall phosphorylation (Figure 3). In contrast, analysis of Smad2 immunoprecipitated from total cell lysates showed that the activated type I receptor induced strong phosphorylation of the protein as described previously (Macias-Silva et al., 1996). These results suggest that SARA
is not phosphorylated in response to TGF(3 signaling.
The phosphorylation state of Smad2 that coprecipitated with hSARAI was examined. Interestingly, unlike the strong induction of Smad2 phosphorylation in the total cellular pool, phosphorylation of Smad2 associated with hSARAI
was not enhanced, but rather appeared to decrease in the presence of TGF~i signaling (Figure 3). This suggested that receptor-dependent phosphorylation of Smad2 might induce dissociation from hSARAI . To examine this directly, the interaction of hSARAI with wild type Smad 2 or a mutant version lacking the C-terminal phosphorylation sites (Smad2(2SA)) was analysed. in the absence of TGF~i signaling, association of hSARAI with either Smad2 or Smad2(2SA) was comparable (Figure 4). In contrast, in cells coexpressing the activated receptor, a significant decrease in the interaction of wild type Smad2 with hSARAI was observed. However, hSARAI/Smad2(2SA) complexes were not reduced by the activated receptor. Together, these results suggest that hSARAI is not phosphorylated in response to TGF~3 signaling and that it preferentially interacts with the unphosphorylated form of Smad2.
Example 5 - SARA and Smad4 form mutually exclusive complexes with Smad2 Phosphorylation of Smad2 induces its interaction with Smad4 (Lagna et al., 1996; Zhang et al., 1997). hSARAI/Smad2 complexes in COS cells coexpressing Smad4 were assessed. In unstimulated cells, the level of hSARAI/Smad2 complex formation was comparable either in the presence or absence of Smad4 (Figure 5, lanes 3 and 6). However, upon activation of TGF(3 signaling, dissociation of Smad2 from hSARAI was significantly enhanced by coexpression of Smad4 (Figure 5, lanes 4 and 7). These results indicated that phosphorylated Smad2 might preferentially interact with Smad4 rather than hSARAI and suggested that Smad2 might form mutually exclusive complexes with either Smad4 or hSARAI . The formation of Smad2/Smad4 and Smad2/hSARA4 complexes in the same transfectants was then examined. Cell lysates were subjected to immunoprecipitation with anti-Flag antibodies directed towards tagged Smad2 and then immunoblotted for the presence of Smad4 and hSARAI . Consistent with previous findings (Lagna et al., 1996; Zhang et al., 1997), interaction of Smad4 with Smad2 was strongly stimulated by the activated type I receptor (Figure 6, lane 3 and 4). Concomitant with the formation of Smad2/Smad4 complexes, the interaction of Smad2 with hSARAI was disrupted by activation of signaling (Figure 6, lanes 6 and 7). Thus, complexes of Smad2/hSARAI and Smad2/Smad4 are mutually exclusive, supporting the notion that Smad4 may compete for Smad2 to enhance dissociation of hSARAI/Smad2 complexes. Together these results demonstrate that during TGF~i signaling, hSARAI/Smad2 complexes are transient and phosphorylation of Smad2 induces dissociation and formation of heteromeric complexes with Smad4.
5 Example 6- hSARAI regulates the subcellular localization of Smad2 The studies described above suggest that SARA functions upstream in the pathway and might control the subcellular localization of Smad2. To test this, an investigation was done to determine whether coexpression of hSARAI might alter the localization of Smad2 in the TGF(3-responsive epithelial cell line, 10 Mv1 Lu, using confocal microscopy. Mv1 Lu cells were used rather than COS
since the Myc antibodies crossreacted with endogenous proteins in the COS and obscured nuclear staining of tagged proteins. In cells expressing hSARAI
alone, the protein displayed a punctate staining pattern that was present throughout the cytosolic compartment and was excluded from the nucleus (Figure 7A). This 15 localization of hSARAI was in contrast to the diffuse staining typically observed for Smad2 in cells overexpressing the protein (Figure 7B). Cells transiently transfected with both hSARAI and Smad2 were examined. In these cells, the distribution of hSARAI was indistinguishable from cells transfected with hSARAI
alone (Figure 7D, left photo). In contrast, the localization of Smad2 in the 20 presence of hSARAI displayed a dramatic shift to a punctate pattern (compare Figure 7B to 7D, centre photos). Moreover, analysis of these immunofluorescent staining patterns by confocal microscopy revealed that hSARAI and Smad2 precisely colocalized in the cytosol (yellow stain, Figure 7D, right photo).
Interestingly, expression of Smad2 at much higher levels than hSARAI reverted 25 the distribution of Smad2 to that observed in cells transfected with Smad2 alone (data not shown). This supports the notion that elevating the amount of Smad2 can saturate hSARAI and yield a diffuse distribution of Smad2 throughout the cell.
Studies were conducted to determine whether activation of TGF~i 30 signaling induces nuclear translocation of Smad2 in the presence of hSARAI
. As shown in Figure 7, the localization of hSARAI in the cytosolic compartment looked similar in the presence or absence of the constitutively active TGF~i type I
receptor (compare Figure 7D and E, left photos). However, TGFJ3 signaling caused a significant proportion of Smad2 to translocate to the nucleus (Figure 7E, centre photo) and this correlated with a shift to an orangy-red colour in the cytosolic colocalization stain (Figure 7E, right photo). Thus activation of TGF(3 signaling induces Smad2 to dissociate from hSARAI and translocate to the nucleus.
To confirm that the punctate localization of overexpressed SARA reflected that of the endogenous protein, the localization of endogenous SARA and Smad2 10 was examined in Mv1 Lu cells. Analysis of the distribution of endogenous hSARAI using affinity-purified rabbit anti-hSARAI antibodies revealed a punctate distribution that was similar to the pattern observed for transiently transfected, epitope-tagged hSARAI (Figure 7F, left photo). This staining was specific, since cells stained with preimmune antisera, or purified antibody 15 blocked with the hSARAI antigen, revealed no detectable staining in the cytosol, although some weak background staining was observed in the nucleus (data not shown). Examination of endogenous Smad2 distribution in the same cell using goat anti-Smad2 antibodies revealed a punctate distribution for Smad2 (Figure 7F, centre photo) as published previously (Janknecht et al., 1998).
Furthermore, 20 analysis of hSARAI and Smad2 together revealed extensive colocaiization of the two proteins (Figure 7F, right photo). Colocalization was not complete and may reflect differences in the stoichiometry of hSARAI versus Smad2 protein levels as suggested above, or the presence of additional regulatory mechanisms in the cell that control interaction of the endogenous proteins.
25 Taken together with the biochemical analysis, these results indicate that hSARAI functions to anchor or recruit Smad2 to specific subcellular regions prior to activation by TGFJ3 signaling.
Example 7 - hSARAI co-localises with TJ3R11 30 The positioning of hSARAI upstream of Smad2 activation suggested to us that hSARAI might recruit Smad2 to specific subcellular domains for phosphorylation and activation by the receptor. interestingly, previous studies on the TGF~i receptor demonstrated clustering of the receptor complex into punctate domains that resembled those displayed by hSARAI (Henis et al., 1994). To test whether hSARAI might colocalize with TGF~3 receptors, the subcellular localization of hSARA1 and TGF~i Mv1 Lu receptors was investigated in Mv1 Lu cells. Endogenous TGF(3 receptors could not be detected, likely due to the low numbers of TGF(3 receptors present on these cells and the even fewer number that are activated in the presence of ligand. The localization of hSARAI
in Mv1 Lu cells cotransfected with T~iRll and treated with TGFj3 was therefore 10 examined. In the absence of hSARAI, T(3R11 displayed a punctate staining pattern similar to the hSARAI pattern (Figure 8A, panels i and ii, respectively), as observed previously in COS cells. Furthermore, in cells coexpressing hSARAI
and TGF~3 receptors, extensive colocalization of hSARAI and T~3R11 was observed (Figure 8A, panel iii). This colocalization was not complete. This may 15 be due to a restricted distribution of hSARAI in only a subset of the intracellular compartments normally occupied by transmembrane receptors, which include the endoplasmic reticulum, Golgi and endocytic pathways. Thus, hSARAI and the TGF~3 receptors colocalize to common subcellufar domains.
The colocalization of hSARAI and the TGF~i receptors suggested the 20 possiblity that hSARAI may interact with the TGF(3 receptor. To test this, a strategy was utilised similar to that employed to characterize the interaction of Smad2 with the TGF(3 receptor (Macias-Silva et al., 1996). Briefly, COS cells were cotransfected with TGF~3 receptors in the presence of hSARAI and were affinity-labelled using ['zsl]TGF~i. hSARAI was then immunoprecipitated from 25 the cell lysates and coprecipitating receptor complexes were resolved by SDS-PAGE and visualized by autoradiography or were quantitated using a gamma counter. Analysis of cells expressing wild type receptors type II and type I;
revealed that receptor complexes coprecipitated with hSARAI (Figure SB, lane 3). Furthermore, in the presence of kinase deficient type I receptor, there was a 30 small increase in binding of hSARAI to the receptor (Figure 8B, lane 2).
This is in contrast to Smad2, which only interacts with TGF[3 receptor complexes that contain kinase deficient type I receptors (Macias-Silva et al., 1996). These data suggest that hSARAI associates with the TGF~ receptor.
Next examined was whether coexpression of Smad2 might enhance the interaction of hSARAI with TGF(3 receptors. In cells expressing wild type receptor I, no difference in the amount of receptor complexes that coprecipitated with hSARAI, either in the presence or absence of Smad2, was observed (Figure 8B, compare lanes 3 and 5). In contrast, the association of hSARAI with receptor complexes containing kinase-deficient type I receptors was enhanced by Smad2 (Figure 8B, lane 4). This finding was consistent with the previous demonstration that kinase-deficient type I receptors stabilize interactions of Smad2 with the receptors. To investigate further the requirement for Smad2 in the interaction of hSARAI with the receptor, a mutant of hSARAI, SARA(OSBD), that removes the Smad binding domain, was tested. Analysis of wild type hSARAI interaction with receptor complexes containing kinase-deficient T~3R1 showed that wild type hSARAI interacted with the receptor and this was enhanced approximately two-fold by Smad2 (Figure 9A). The OSBD mutant of hSARAI retained the capacity to associate with the receptor, although the efficiency of interaction was slightly reduced relative to wild type hSARAI .
Importantly, unlike wild type hSARAI, binding of mutant hSARAI to the receptor was not enhanced by coexpression of Smad2. Together, these data suggest that hSARAI interacts with the TGF(3 receptor independently of Smad2 binding and that Smad2 cooperates to enhance the association.
To further characterize the domains in SARA that mediate binding to the TGF(3 receptor, the interaction of a panel of SARA mutants with the TGF(3 receptor was tested. Interestingly, interaction with the TGF~3 receptor was strongly suppressed in three mutants in which the FYVE domain was disrupted (Figure 9B; 0594, 0664 and the internal deletion 0597-665). Since the FYVE
domain is required for the correct subcellular localization of SARA, it was postulated that, once bound to the membrane, other regions in SARA might contribute to the interaction with the receptor. To examine this possibility, several carboxy-terminal truncation mutants of hSARAI were tested.

Interestingly, deletion of the C-terminus downstream of position 750 suppressed receptor interaction, despite efficient expression of the truncated protein.
This suggests that regions in the carboxy-terminus of SARA contribute to receptor interaction. In these analyses, the question of whether overexpression of Smad2 could rescue some interaction of SARA mutants with the receptor was also explored. For both the FYVE domain mutants and the C-terminal truncation, Smad2 expression was able to restore some interaction with the TGF~3 receptor.
It is likely that the high levels of protein and receptor expression that are achieved in COS cells can drive some receptor interaction, even in the absence of appropriate localization signals.
Example 8 - A modular domain in SARA mediates association with Smads To investigate the functional importance of SARA in TGF(3 signaling, the domains in the protein that mediate both its localization to specific subcellular 15 regions and its interaction with Smad2 were defined. To this end, a series of deletion mutants of hSARAI were constructed and tested for their ability to interact with Smad2 in COS cells by immunoprecipitation followed by immunoblotting. As summarized in Figure 10, loss of the first 665 amino acids of hSARAI, which included the double zinc finger/FYVE domain, did not interfere with hSARAI binding to Smad2. However, further deletions (01-704) completely abolished the interaction of Smad2 with hSARAI . To map the carboxy-terminal boundary of the Smad binding domain, a number of C-terminal truncations were also analyzed. Deletion of all residues downstream of position 750 did not affect Smad2 interaction with hSARAI, while an additional loss of 85 amino acids (0665-1323) completely abrogated binding to Smad2. To determine whether the region defined by this deletiona) analysis was sufficient to bind Smad2, the 85 amino acids referred to as the Smad Binding Domain (SBD) were linked to GST and the fusion protein was expressed in bacteria (GST-h SARA(665-750)). Incubation of lysates prepared from cells expressing Smad2 or 30 Smad3 with GST-SBD resulted in efficient binding of both Smads to the fusion protein (Figure 11A). This interaction is likely direct, since bacterially expressed SBD associates efficiently with bacterially-produced Smad2 (data not shown).
These studies thus define a novel domain in SARA that mediates interaction with Smad2 and Smad3 and which is located downstream of the FYVE domain.
The above-described analysis in COS cells showed that phosphorylation of Smad2 by the TGF(3 receptor induced dissociation from SARA. To determine whether this reflects an alteration in the ability of the SBD to bind phosphorylated Smad2, the interaction of GST-SBD with Smad2 in lysates obtained from cells expressing Smad2 alone, or Smad2 together with either wild type or activated TGF~i type I receptor, was tested. As described previously, 10 coexpression of activated type I receptors with the appropriate receptor-regulated Smad yields efficient phosphorylation of Smad protein. In lysates from cells expressing Smad2 alone or Smad2 with wild type receptors, efficient binding of Smad2 to GST-SBD was observed. In contrast, in the presence of activated Tj3Rl, the interaction of Smad2 with GST-SBD was strongly reduced 15 (Figure 11 B). This reduction correlated with receptor-dependent phosphorylation, since the phosphorylation site mutant, Smad2(2SA), interacted efficiently with GST-SBD, even in the presence of activated T(3R1 (data not shown). These data strongly support a mechanism whereby SARA interacts with unphosphorylated Smad2 and receptor-dependent phosphorylation induces 20 dissociation by altering the affinity of Smad2 for the SBD.
Examine 9 - The FYVE domain controls the subcellular localization of SARA
The subcellular localization of a selection of the SARA mutants was analysed by immunofiuorescence and confocal microscopy. Analysis of 25 truncation mutants that removed the amino terminus upstream of the FYVE
domain (D1-531) yielded wild type patterns of staining (Figure 12, compare panels i and ii). However, a further deletion (D1-664) that disrupted the FYVE
domain but did not int=-~rfere with the Smad binding domain, abolished the wild type staining pattern (Figure 12, panel iii). Similar studies of the C-terminal 30 domains showed that residues downstream of the FYVE domain (0665-1323) did not alter the localization of the mutant protein (Figure 12, panel iv), while truncations within the FYVE domain (0596-1323) led to diffuse localization throughout the cell (Figure 12, panel v). Of note, the 0665-1323 mutant lacked the Smad binding domain, thereby indicating that interaction with Smad2 is not required for proper SARA localization. To confirm that FYVE domain function S was required for localization of SARA, a mutant with a small internal deletion that removes the FYVE domain 0597-664) was tested. Consistent with the other mutants, localization of this protein was clearly disrupted (Figure 12, panel vi).
Since none of these mutants interfered with Smad binding, the FYVE domain appears to be required to maintain the normal localization of SARA but is not involved in mediating interactions with Smads.
Examale 10 - SARA-mediated localization of Smad2 is necessary for TGFfi si~nalin;g The availability of mutants of hSARAI that interact with Smad2 but fail to target to the appropriate subcellular sites allowed the question of whether hSARAI-mediated localization of Smad2 was important to TGF~3 signaling to be addressed. Whether SARA(01-594) and SARA(01-664), which bind Smad but fail to distribute to the correct subcellular domains, would mislocalize Smad2 was examined. Coexpression of either mutant with Smad2 showed that they 20 were unable to recruit Smad2 to the normal SARA domains (Figure 13A, panels i and ii). As expected, SARA(01-704), which lacks a Smad binding domain, was unable to control Smad2 localization (Figure 13A, panel iii). Whether these mutants could cause mislocalization of Smad2 was also examined. For this, cells were cotransfected with wild type hSARAI and Smad2 either in the absence or presence of SARA(~1-594), SARA(01-664) or SARA(01-704). In control transfectants, performed in the absence of mutant hSARAI, hSARAI and Smad2 were colocalized in punctate domains as described above (Figure 13B, panel i). However, in the presence of either SARA(O1-594) or SARA(01-664), the localization of wild type hSARAI was normal, but the distribution of Smad2 30 was clearly disrupted and displayed a diffuse pattern (Figure 13B, panels ii and iii, respectively). Moreover, coexpression of SARA(~1-704), which does not bind Smad2, resulted in Smad2 distribution that was indistinguishable from that of the wild type pattern (Figure 13B, panel iv). Thus, SARA(~1-594) and SARA(~1-664) induce the mislocalization of Smad2.
Since SARA(~1-664) mislocalizes Smads and interferes with receptor association, we investigated whether this mutant would disrupt TGF~i signaling.
To test this, we transiently transfected the TGF(3-responsive reporter gene lux into Mv1 Lu cells in the presence and absence of wild type or mutant versions of hSARAI . Expression of wild type hSARAI had no effect on TGF~i signaling (Figure 14). In contrast, transfection of SARA(01-664) significantly inhibited TGF(3-dependent signaling at the lowest concentration of DNA tested, while transfection of higher doses completely abolished responsiveness of the cells. We also tested SARA(01-704) which Packs a functional Smad binding domain and does not alter Smad2 localization. Transfection of this mutant had no effect on TGF(3 signaling (Figure 14). In addition to analysis of the 3TP
promoter, we examined induction of the activin response element (ARE) from the Xenopus Mix.2 gene in HepG2 cells.
This ARE is stimulated by either TGF~i or activin signaling, which induces assembly of a DNA binding complex that is composed of Smad2, Smad4 and a member of the FAST family of forkhead DNA binding proteins. Since HepG2 cells do not possess endogenous FAST activity, wild type or mutants of hSARAI
were cotransfected with FAST2 and the ARE-lux reporter plasmid as described previously (Labbe et al., 1998). Expression of either SARA(1-0594) or SARA(1-0664), which interfere with or delete the FYVE domain, respectively, resulted in a strong suppression of TGF(3-dependent induction of the ARE (Figure 15).
However, none of the other mutants tested suppressed activation of this promoter. Since none of these latter mutants disturb the localization of hSARAI-Smad2 complexes, these data strongly suggest that recruitment of Smad2 to the receptor-containing subcellular domains is important for TGF/3 signaling.
Example 11 - Tissue distribution of hSARA exlaression The 3'UTR of hSARAI and a Smad2 cDNA fragment were used to probe a human multiple tissue Northern blot (Clontech). The results are shown in Figure 16 - hSARAI : upper panel and Smad2: lower panel. hSARAI and Smad2 were ubiquitously expressed in the tissues examined; relatively low levels of hSARAI were selected in liver. hSARAI and Smad2 showed a similar expression pattern except in placenta, where proportionally more Smad2 message was observed. A single transcript of 5.0 kb is seen, corresponding to the full length hSARAI cDNA.
SARA expression was examined in a variety of cell lines using RT-PCR
10 analysis and the gene was found to be expressed in every cell line tested.
These included HepG2 hepatoma cells, NBFL neuroblastoma cells, SW480 colorectal cancer cells, N 1 H 3T3 fibroblasts, P19 embryonic carcinoma cells, MC3T3 calvarial cells and Mv1 Lu lung epithelial cells (data not shown). hSARAI
appears to be a ubiquitously expressed partner for Smad2 and Smad3.
Example 12 - Interaction of endogenous hSARA1 and Smad2 in mammalian cells Lysates from HepG2 cells, either untreated or treated with InM TGF~i, were immunoprecipitated with an affinity-purified, anti-hSARAI rabbit polyclonal antibody and the immunoprecipitates were immunoblotted with a polyclonal, anti-Smad2 antibody (Macias-Silva et al., 1998). Controls were immunoprecipitated with pre-immune sera or N19 anti-Smad2/3 antibody. The results are shown in Figure 17. In immunoprecipitates prepared with preimmune antisera, no Smad2 was detectable. Anti-hSARAI
immunoprecipitates clearly showed Smad2 co-precipitating with hSARAI . TGF~3 treatment prior to lysis gave decreased association of Smad2 and SARA.
These results demonstrate that SARA is a specific partner of receptor-regulated Smads in the TGF(3/activin signaling pathway and further suggest that TGF(3 signaling induces dissociation of SARA/Smad complexes.

The present invention is not limited to the features of the embodiments described herein, but includes all variations and modifications within the scope of the claims.

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w0 00/05360 f~C.T; CA99/00656 SO
TABLE 1 - hSARAl - SoQUence ID NO~1 GCATACTGAATCAGCAGGACTGGCTGGTGGTGCAGCAGACATCATGAGTAAGCACCGA
GAAGTCTGTTCCTTATCACGTGTGTAAGGGGAAAAAGGIiTAAACAAGTCTCTTAAGT
GGTGTTTCCTCACCGATGGAGAATTACTTCCAAGCAGAAGCTTACAACCTGGGACAAG
GTGTTAGATGAATTTGAACAAAACGAAGATGAAACAGTTTCTTCTACTTTATTGGATA
CAAAGTGGAATAAGATTCTAGATCCCCCTTCTCACCGGCTGTCATTTAACCCTACTTT
GGCCAGTGTGAATGAATCTGCAGTTTCTAATGAGTCACAACCACAACTGAAAGTCTTC
TCCCTGGCTCATTCAGCTCCCCTGACCACAGAGGAAGAGGATCACTGTGCTAATGGAC
AGGACTGTAATCTAAATCCAGAGATTGCCACAATGTGGATTGATGAAAATGCTGTTGC
AGAAGACCAGTTAATTAAGAGAAACTATAGTTGGGATGATCAATGCAGTGCTGTTGAA
GTGGGAGAGAAGARATGTGGAAACCTGGCTTGTCTGCCAGATGAGAAGAATGTTCTTG
TTGTAGCCGTCATGCATAACTGTGATAAAAGGACATTACAAAACGATTTACAGGATTG
TAATAATTATAATAGTCAATCCCTTATGGATGCTTTTAGCTGTTCACTGGATAATGAA
AACAGACAAACTGATCAATTTAGTTTTAGTATAAATGAGTCCACTGAAAAAGATATGA
ATTCAGAGAAACAAATGGATCCATTGAATAGACCGAAAACAGAGGGGAGATCTGTTAA
CCATCTGTGTCCTACTTCATCTGATAGTCTAGCCAGTGTCTGTTCCCCTTCACAATTA
AAGGATGACGGAAGTATAGGTAGAGACCCCTCCATGTCTGCGATTACAAGTTTAACGG
TTGATTCAGTAATCTCATCCCAGGGAACAGATGGATGTCCTGCTGTTAAAAAGCAAGA
GAACTATATACCAGATGAGGACCTCACTGGCAAA,ATCAGCTCTCCTAGGACAGATCTA
GGGAGTCCAAATTCCTTTTCCCACATGAGTGAGGGGATTTTGATGAAA,A.AAGAGCCAG
CAGAGGAGAGCACCACTGAAGAATCCCTCCGGTCTGGTTTACCTTTGCTTCTCAAACC
AGACATGCCTAATGGGTCTGGAAGGAATAATGACTGTGAACGGTGTTCAGATTGCCTT
GTGCCTAATGAAGTTAGGGCTGATGAAAATGAAGGTTATGAACATGAAGAAACTCTTG
GCACTACAGAATTCCTTAATATGACAGAGCATTTCTCTGAATCTCAGGACATGACTAA
TTGGAAGTTGACTAAACTAAATGAGATGAATGATAGCCAAGTAAACGAAGAAAAGGAA
AAGTTTCTACAGATTAGTCAGCCTGAGGACACTAATGGTGATAGTGGAGGACAGTGTG
TTGGATTGGCAGATGCAGGTCTAGATTTAAAAGGAACTTGCATTAGTGAAAGTGAAGA
ATGTGATTTCTCCACTGTTATAGACACACCAGCAGCAAATTATCTATCTAATGGTTGT
GATTCCTATGGAATGCAAGACCCAGGTGTTTCTTTTGTTCCAAAGACTTTACCCTCCA
AAGAAGATTCAGTAACAGAAGAAAAAGAAATAGAGGAAAGCAAGTCAGAATGCTACTC
AAATATTTATGAACAGAGAGGAAATGAGGCCACAGAAGGGAGTGGACTACTTTTAAAC
AGCACTGGTGACCTAATGAAGAAAAATTATTTACATAATTTCTGTAGTCAAGTTCCAT
CAGTGCTTGGGCAATCTTCCCCCAAGGTAGTAGCAAGCCTGCCATCTATCAGTGTTCC
TTTTGGTGGTGCAAGACCCaAGCAACCTTCTAATCI'TAAACT'~CAAATTCCAAAGCCA
TTATCAGACCATTTACAAAATGACTTTCCTGCAAACAGTGGAAATAATACTAAAAATA
AAAATGATATTCTTGGGAAAGCAAAATTAGGGGAAAACTCAGCAACCAATGTATGCAG
TCCATCTTTGGGAAACATCTCTAATGTCGATACAAATGGGGAACATTTAGAAAGTTAT
GAGGCTGAGATCTCCACTAGACCATGCCTTGCATTAGCTCCAGATAGCCCAGATAATG
ATCTCAGAGCTGGTCAGTT'rGGAATTTCTGCCAGAAAGCCATTCACCACGCTGGGTGA
GGTGGCTCCAGTATGGGTACCGGATTCTCAGGCTCCAAATTGCATGAAATGTGAAGCC
AGGTTTACATTCACCAAAAGGAGGCATCACTGCAGAGCATGTGGGAAGGTTTTCTGTG
CTTCCTGCTGTAGCCTGAAATGTAAACTGTTATACATGGACAGAAAGGAAGCTAGAGT
GTGTGTAATCTGCCATTCAGTGCTAATGAATGCTCAAGCCTGGGAGAACATGATGAGT
GCCTCAAGCCAGAGCCCTAACCCTAACAATCCTGCTGAATACTGTTCTACTATCCCTC
CCTTGCAGCAAGCTCAGGCCTCAGGAGCTCTGAGCTCTCCACCTCCCACTGTGATGGT
ACCTGTGGGAGTTTTAAAGCACCCTGGAGCAGAAGTGGCTCAGCCCAGAGAGCAGAGG
CGAGTTTGGTTTGCTGATG.~GATCTTGCCCAATGGAGhAGTTGCTGATGCAGCCAAAT
TAACAATGAATGGAACTTCCTCTGCAGGAACCCTGGCTGTGTCACrICG.".sCCCAGTCAA
GCCAGTAACTACCAGTCC~'CTr.CCAGCAGAGACGGATATTTGTCTATTCTCTGGGAGT
ATAACTCAGGTTGGAAGTCCTGTTGGAAGTGCAATGAATCTTATTCC
TGAAGATGGCC
TTCCTCCCATTCTCATCTCCACTGGTGTAA.AAGGAGACTATGCTG:GGA~,GAGAAACC
ATCACAGATTTCAG T iiATG C:-.GC.~GTTGGAGGATGG i G:~ C. C C : ;~AC C
C.'~CTTGTATTT
GTTTTAAATGCAAATT:GTTGTCAATGGTTAAAATTGT'~.TTATGTG~CAGGAAGT
GCTGGTGTTTCACAACCAAGGGAATGCATGCAGTGGG T C:~G ~ ~':'~.=";.:,T:.~TCATTCT
TCTACAGTGTTTAC C;~G.:..TG:~.AAGTG T TTG C CAAAG V,~-, y:-~ T C =""'"n~ T CAC T
TTGTG
CAGCT':'TATCGGG.=.~ "C ~'~ ~-,.,.- ..,....., ..,.... ..- . .. ,....,_, ~"
.,..,C~rZ~CT
..aV't~VVV~TG1VVIGsaV~ru~'~T.aVVt~a\.rall~ i '='CAGTCAAAG""""'~~'""'~~~_~~-~.,ppGAACATG~'~G~,"' '- ..-._.."...,.._ ", li-'w-JV~Vl Vi VCflT T~it'SlVIVtILt~lCiAC
SUBSTITUTE SHEET (RULE 26) WO OOI05360 PCTlCA99/00656 ~1 TABLE 1 - hSARAl Continued CTACCAGTCACTGCAAGACCTAGTACTCCCAACCCCACCTTACTTGTT.VVVIfiTV.~T
ATCCAGAAATGGGAAACTCCTTGGGCTAAAGTATTTCCTATCCGTCT~~-.TGTTGAGAC
TTGGAGCTGRATATCGACTTTATCCATGCCCACTATTCAGTGTCAGATT:CGGAAGCC
ATTGTTTGGAGAGACGGGGCATACCATCATGAATCTTCTTGCAGACTTC AG'r.~,ATTr.C
CAGTATACCTTGCCAGTAGTTCAAGGTTTGGTGGT?GATATGGAAGTTCGG:~AAACTA
GCATCAAAATTCCCAGCAACAGATACAATGAGATGATGAAAGCCATGAACAAGTCCAA
TGAGCATGTCCTGGCAGGAGGTGCCTGCTTCAATGAAAAGGCAGACTC~CATCTTGTG
TGTGTACAGAATGATGATGGAAACTATCAGACCCAGGCTATCAGTATTCACAATCAGC
CCAGAAAAGTGACTGGTGCCAGTTTCTTTGTGTTCAGTGGCGCTCTGAAATCC:C'r'TC
TGGATACCTTGCCAAGTCCAGTATTGTGGAAGATGGTGTTATGGTCCAGr.TTACTGCA
GAGAACATGGATTCCTTGAGGCAGGCACTGCGAGAGATGAAGGACTTCACCATCACCT
GTGGGAAGGCGGACGCGGAGGAACCCCAGGAGCACATCCACATCCAGTGG.GTGGATGA
TGACAAGAACGTTAGCAAGGGTGTCGTAAGTCCTATAGATGGGAAGTCCATGGAGACT
ATAACAAATGTGAAGATATTCCATGGATCAGAATATAAAGCAAATGGAAAAGTAATCA
GATGGACAGAGGTGTTTTTCCTAGAAAACGATGACCAGCACAATTGCCTCAGTGATCC
TGCAGATCACAGTAGATTGACTGAGCATGTTGCCAAAGCTTTTTGCC~TGCTCTCTGT
CCTCACCTGAAACTTCTGAAGGAAGATGGAATGACCARACTGGGACTACGTGTG:,CAC
TTGACTCAGATCAGGTTGGCTATCAAGCAGGGAGCAATGGCCAGCCCCT':'CCCTCGCA
GTACATGAATGATCTGGATAGCGCCTTGGTGCCGGTGATCCATGGAGGGGCCTGCCAG
CTTAGTGAGGGCCCCGTTGTCATGGAACTCATCTTTTATATTCTGGAAAACATCGTAT
AAACAGAGAAGACTTCATTTTTTTCTGTTCAGACTTGTTGCAACAGCAGTCATACCCA
AATCATTTGCACTTTAAAACTGGAAGATTAAGCTTTTGTTAACACTATTAATGGGGTG
GGGAATAGGGTGGGAGTGGGGGTTTGGGAGACGGGTGGGAAAGGGTGGTTGGGGGGAC
CGATGTTCCATAATTCTAAGTCTTCTATGCATTGTCCACCAAGAAGATCTGGGCAGCT
TCTGTTCCTGCACAACAGTTATGCTATCCTTGCAGCTAATCCCCTTCTGTTACTGTTT
AGACAAGAATTCCGCTCCTCTCTCAAGATTTACTTATGGTCATGTGCTCAGAAATGCT
CAAATGGGTACAACCATCACCAAGGGTGGGATGGGAGGGCAGAGGGGAAATAAAATAT
AAAGCAT AAAA.AAA
SUBSTITUTE SHEET (RULE 26) TAHL$ 2 hSJIRA1 - SeQUence ID NO~2 TLQNDLQDCNNYNSQSLMDAFSCSLDNENRQTDQFSFSINESTEKDMNSEKQMDPLNR
PRTEGRSVNHLCPTSSDSLASVCSPSQLKDDGSIGRDPSMSAITSLTVDSVISSQGTD
GCPAVKRQENYIPDEDLTGICISSPRTDLGSPNSFSHMSEGILMKKEPAEESTTEESLR
SGLPLLLXPDMPNGSGRNNDCERCSDCLVPNEVRADENEGYEHEETLGTTEFLNMTEH
FSESQDMTNWKLTKLNEMNDSQVNEEKEKFLQISQP~DTNGDSGGQCVGLADAGLDLK
GTCISESEECDFSTVIDTPAANYLSNGCDSYGMQDPGVSFVPKTLPSKEDSVTEEKEI
EESRSECYSNIYEQRGNEATEGSGLLLNSTGDLMKIQSYLHNFCSQVPSVI~GQSSPKVV
ASLPSISVPFGGARPKQPSNLKLQIPFtPLSDHLQNDFPANSGNNTKNKNDILGKAKI,G
ENSATNVCSPSLGNISNVDTNGE$LESYEAEISTRPCLALAPDSPDNDLRAGQFGISA
RKPFTTLGEVAPVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLL
Y1~RKEARVCVICHSVLMNAQAW~NI~ZSASSQSPNPNNPAEYCSTIPPLQQAQASGAL
SSPPPTVMVPVGVLKIiPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSSAGT
LAVSHDPVKPVTTSPLPAETDICLFSGSITQVGSPVGSAMNLIPEDGLPPILISTGVK
GDYAVEEKPSQISVMQQLEDGGPDPLVFVLNANLLSMVKIV'NYVN'RKCWCFTTKGMHA
VGQSEIVILLQCLPDEKCLPRnIFNHFVQLYRDALAGNWSNLGHSFFSQSFLGSKEH
GGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKVFPIRLMLRLGAEYRLYPCP
LFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKIPSNRYNE
MMg:AMNKSNEHVLAGGe'~CFNERADSFILVCVQNDDGNYQTQAI S IHNQPRKVTGASFFV
FSGALKSSSGYLAKSSIVEDGVMVQITAENMDSLRQALREMKDFTITCGKADAEEPQE
HIFiIQWVDDDKNVSKGWSPIDGKSMETITNVKIFHGSEYKANGRVIRWTEVFFLEND
DQHNCLSDPADHSRLTEHVAKAFCLALCTQLKLLKGDGMTF~,LGLRVTLDSDQVGYQAG
SNGQHLPSQYMNDFDSDLVKMIHGGACQLSEGPVVMELIFYILENIV
SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCTlCA99/00656 TJ18LE 3 human SARA2 Seauence ID NO~3 ACTCCCGGCCGGGGTAGCTC':"-'CACTCC'r'CAGCGCGACGTCGTG T CGAG T T C C Ca,AA.A
AGCTCCGCAGGGGCTGTAGGGAGGTGATCTCATCCATTRACAGCTGT.~TGTTGCCAGT
TCCCAAATCTTTATCTATCTCAGACTTCTCTCCTGCATTCCAGATTC'-"W.T:.T TCAGC
TGCCTTTTGGATATCTCTCCCAGGATGTTCTCAAGGCATACAAGAATTAAATTCTGAA
TAAGTCTGCAGGTAGGATGGACAGTTATTTTAAAGCAGCTGTCAGTG~.C:TGGr.CAAA
CTCC:TGATGATTTTGAACAGAACCCAGATGAACAAGATTATCTC~uCAGATGTACAAA
ATGCATATGATTCTAACCACTGCTCAGTTTCTTCAGAGTTGGCTTCCTCACAGCGAAC
TTCATTGCTCCCAAAAGACCAAGAGTGCGTTAATAGTTGTGCCTCATCAGAAACAAGC
TATGGAACAAATGAGAGTTCCCTGAATGAAAAAACACTCAAGGGACTTr.CT'.'CTATAC
AAAATGAAAAAAATGTAACAGGACTTGATCTTCTTTCTTCTGTGGATGGTGGTACTTC
AGATGAAATCCAGCCGTTATATATGGGACGATGTAGTAAACCTATCTGTGATCTGATA
AGTGACATGGGTAACTTAGTTCATGCAACCAATAGTGAAGAAGATATT~,AAAAATTAT
TGCCAGATGATTTTAAGTCTAATGCAGATTCCTTGATTGGATTGGATTTATCTTCAGT
GTCAGATACTCCCTGTGTTTCTTCAACAGACCATGATAGTGATACTGTCAGAGAACAA
CAGAATGATATCAGTTCTGAATTACAAAATAGAGAAATCGGAGGAATCAAAGAATTGG
GTATAAAAGTAGATACAACACTTTCAGATTCCTATAATTACAGTGGAAC:-~Ga.AAATTT
AAAAGATAAAAAGATCTTTAATCAGTTAGAATCAATTGTTGATTTTAACATGTCATCT
GCTTTGACTCGACAAAGTTCCAAAATGTTTCATGCCAAAGACAAGCTACAACACAAGA
GCCAGCCATGTGGATTACTAAAAGATGTTGGCTTAGTAAAAGAGGAAGTAGATGTGGC
AGTCATAACTGCCGCAGAATGTTTAAAAGAAGAGGGCAAGACAAGTGCTTTGACCTGC
AGCCTTCCGAAAAATGAAGATTTATGCTTAAATGATTCAAATTCAAGAGATG~.A.A,ATT
TCAAATTACCTGACTTTTCCTTTCAGGAAGATAAGACTGTTATAAAACAATCTGCACA
AGAAGACTCAAAAAGTTTAGACCTTAAGGATAATGATGTAATCCAAGATTCCTCTTCA
GCTTTACATGTTTCCAGTAAAGATGTGCCGTCCTCATTGTCCTGTCTTCCTGCGTCTG
GGTCTATGTGTGGATCATTAATTGAAAGTAAAGCACGGGGTGATTTTTTACCTCAGCA
TGRACATAAAGATAATATACAAGATGCAGTGACTATACATGAAGAAATACAGAACAGT
GTTGTTCTAGGTGGGGAACCATTCAAAGAGAATGATCTTTTGAAACAGGAAAA.ATGTA
AAAGCATACTCCTTCAGTCATTAATTGAAGGGATGGAAGACAGAAAGATAG~.TCCTGA
CCAGACAGTAATCAGAGCTGAGTCTTTGGATGGTGGTGACACCAGTTCTACAGTTGTA
GAATCTCAAGAGGGGCTTTCTGGCACTCATGTCCCAGAGTCTTCTGATTGTTGTGAAG
GTTTTATTAATACTTTTTCAAGCAATGATATGGATGGGCAAGACT ~'AGasT T.=~;.'~"~'TAA
TATTGATGAAGGCGCAAAAAGTGGCCChCTAATTAGTGATGCTGAAC:'~G~TGCCTTT
CTGACAGAACAGTATCTTCAGACCnCT?.ACATAAAGTCTTTTGAAGAA.AATGTAAATG
ACTCTAAATCGCAAATGAATCAGATAGATATGAAAGGCTTAGATGATG:~~CATCAA
TAATATATATTTCAATGCAGAAGCAGGAGCTATTGGGGAAAGTCATGGTATTa.ATATA
ATTTGTGAAACAGTTGATAAACAAAATACAATAGAAAATGGCCTTTCTT"'AGGAGAAA
AAAGCACTATTCCAGTTCAACAAGGGTTACCTACCAGTAAGTCTGAGaTTA.:AAATCA
ATTATCAGTCTCTGATATTAACAGTCAATCTGTTGGAGGGGCCAGACCTAAGC.yATTG
TTTAGCCTTCCATCAAGAACAAGGAGTTCAAAGGACCTGAATAAGCCAGe'~.T.;TTCCAG
ATACAATAGRAAGTGAACCCAGCACAGCAGATACCGTTGTTCCAATCACTT~TGCTAT
AGATTCTACAGCTGATCCACAGGTTaGCT'~'CAACTCTAATTACATTGATAT~-.GAAAGT
AATTCTGAAGGTGGATCTAGTTTCGThACTGCAAATGAAGATTCTGTaCCTGAA.A.ACA
CTTGCAAAGAAGGCTTGGTTTTGGGC C:~GAAACAGCCTACTTGGG T T C C C',G:.~ T TCAGA
AGCTCCAAACTGTATGAACTGCCAAGTC«AATTTACTTTTACCAAACGGCG~CaCCAT
TGCCGAGCATGTGGGAAAGTAT T"'TG T GGTGTCTGTTGTAATAGG~.AG T G':'~ACTGC
AATATCTAGAAAAGGAAGCAAGAGT:~TGTGTAGTCTGCTATGAAACTATTyG:nAAGC
TCAGGCAT?TGAAAGGATGATG:..G : C ~~,CTGGTTCTAATCTTAAGT C':'~T CnT TC T
GATG~T G TACTACTGTCCAGCC ~' C C':" _AGGAGAACCAAACATC CnG T n T:~;. C'_ TCAC
CAGG"yACTT T GCCAGTCTCAGCr".CT ~'W~.AACCAGGTGTTGAAG~hC'~':~ T u'_"_'.~. CAA
AGi.~:yC.=.G:~Gr'1GAGTATGG T T .'~CW,.=.T~~s TATATTGCCCAATG" i.~:~i.."'-='.;Cr.GAT
ACAA "C.~AAATTATCATCTGGAhG T ~,~,G~,TG T T CTGAAGAC':"_'"'hG T C C'" C "' C~'CAC
CTGA T G T G C C =ATGACAG 1 wW/'f Vfl V 1 V V llT C!'~ l TC v. ~TT
CTII'T~'iL.tf V Z V V
GC Cra~u~CnATGe~GACAGGisv;si~ T:z i ~":W.i~iwe~ae~~ATGe"~aGATAATT 'raGi-~G'~' _ = =' ~~ T TAT
...._.~..,._ ~.GGTGGAi.~.'" .. ; _ v.AVV 1 w.~l ...~_ m1 I~ ~~~ n7~ ~_ .~.~.-.~ .. CTw.
1 ~3T.~~ly~ VMl..t1't'fVV~TV/9V V V V~~..~ ~ ~~
..TGVTTriaTTTACACTAG ~""'~"" ~~~~'~ T~w~~_~~---_ ,., lllGCilVtll'Twww '~V7~.l1V~C1VMV1u1\.v:.~.~~aGiL.
SUBSTITUTE SHEET (RULE 26) WO OOI05360 PCTlCA99100656 TAEZE 3 human SARA2 - Continued TACTGG T G T ~':"='~,GTTAACAGCAATTTACC~.=.T T G ~ T:,GTATTTCAGAT T A ~AGG T':
a, CTGTGTGATATTAACAAGTATGTCTGCAATAAGnTT~.GTCTTCTACCTAATGATGr.GG
ACAGT T T GC C C C CACTTCTGGTTGCATCTGGAGA~,AAGGGATCAGTGCC T G T AGT:~G.=.
AGAACATCCATCTCATGAGCAGATCATTTTGCT'~C-=GAAGGTGAAGGCT::'C:.TCC~' GTTACATTTGTCCTAAATGCTAATCTACTCGTGAATGTCAAATTCATATTTTATTCC:
CAGACAAATATTGGTACTTTTCAACCAATGGATTGCATGGCTTGGGACAGGCAGAAAT
TATTATTCTATTGTTATGTTTGCCAAATGAAGATACTATTCCTRAGGACATCTTCAGA
CTATTTATCACCATA?ATAAGGATGCTCTAAAAGG.=~AAATACATAGARAACTT~vGAC.~
ATATTACCy~ ACTGAGAGTTTTCTCAGTAGCAAGGATCACGGAGGATTCCTGTTTAT
TACACCTACTTTTCAGAAACTTGATGATCTCTCATTACCAAGTAATCCTTTTCTTTGT
GGAATTCTTATCCAGAAGCTTGAGATTCCCTGGGCAAAGGTTTTTCCTATGCGTTTAA
TGTTGAGATTGGGTGCAGAATATAAAGCATATCCTGCTCCTCTAACAAGCATCAGAGG
CCGAAAACCTCTTTTTGGAGRAATAGGACACACTATTATGAACTTACTTGTTGACCTT
CGAAATTACC.~GTATACCTTGCATAATATAGATCAACTGTTGATTCATATG~v.~.AATGG
GAAAAAGCTGCATA.AAAATACCACGGAAAAAGTACAGTGATGTAATGAAAGTACTAAA
TTCTTCCAATGAGCATGTCATTAGCATTGGAGCAAGTTTCAGTACAGAAGCAGATTCT
CATCTAGTCTGTATACAGAATGATGGAATTTATGAAACACAGGCCAACAGTGCCACTG
GCCATCCTAGAAAAGTGACAGGTGCAAGTTTTGTGGTATTCAATGGAGCTCTAAAAAC
ATCTTCAGGATTTCTTGCTAAGTCCAGCATAGTTG~,AGATGGCTTAATGGTACAAATA
ACTCCAGAGACCATGAATGGCTTGCGGCTAGCTT:ACGAGAACAGAAAGACTTTA.AA.A
TTACATGTGGG:.~AAGTTGATGCAGTAGACCTGAGAGAATACGTGGATATCTGCTGGGT
AGATGCTGAAGAAAAAGGAAACAAAGGAGTTATCAGTTCAGTGGATGGAATATCATTA
CAAGGATTTCCAAGTGAAAAAATAAAACTGGAAGCAGATTTTGAAACCGATGAGAAGA
TTGTAAAATGTACCGAGGTGTTCTACTTTCTAAAGGACCAGGATTTATCTATTTTATC
AACTTCTTATCAGTTTGCAAAAGAAATAGCCATGGCTTGTAGTGCTGCGCTGTGCCCT
CACCTGAAAACTCTAAAAAGTAATGGGATGAATAAA.ATTGGACTCAGAGTTTCCATTG
ACACTGATATGGTTGAATTTCAGGCAGGATCTGAAGGCCAACTTCTGCCTCAGCATTA
TCTAAATGr'1TCTTGATAGTGCTCTGATACCTGTGhTCCATGGTGGGACCTCCAACTCT
AGTTTACCATTAGAAATAGAATTAGTGTTTTTCATTATAGAACATCTTTTTTAGTGAA
AGAATGTGCCnTATTACATATTGCAACCTAATT';'GTTAAAACTAACTCCAGCACTAAA
GCTGAAATGCCACnA.ACACTAAAAGTATAAATATGTCr'GATTTTTGAAACACATAAGC
TTTGCTC':"_'TAGGCAGGAATGATCTTTTCAAATCAT T:-.GCACAATATTTAAATATCT.-.
AAAATTTAAGAGhTCCATACTTTCTGTAGCT'=' T ACAi..TTAATTTAAGTACTAAAA.AG.=.
CAAGGATTTCT'"TTAAGAAATTTATAGCATTTACTGTGTTATTTAA.ATGCTAAGCCAA
AGTATCTGCACTTAGGTATACCTCTTTATGCCAATt.ATGATTTTAATGAAGGCTCTTT
TCAGATGTAACCTTATGAAGGAAATATCTGCTTTGTGTATATGCCAGTTAGAATACTG
GTTTCTAAAGTCTGTCAAATTGTATTTCAGTGGCACe'~AAAACCAGTTTTGAGGTCTTA
GACTTATAATT C'T_'TTGAATAAAACTGATAACTTAT ~"~ GTATAATTGGAG T G GAGAC C'.' ACCTCCATAAT'~'AGATAAACTCTTTTTGGATTATAATCAGAATTTTGCCTTTTTTCT:' CTCAAATTATTACATATGTATGTATTATATATCCACATATATAGTTTTCCCTGATTAA
ATGGATATTAAAATAATTGCGGGTGCTTCAGGACT~'~'TTGCTTCTATATTTAAGTAT:y TTGTTTT':'ATAGCAAGAACATATTCTGAATGT T :':'ATAA.ATCTT TAATAATTTATATG
TAGGTAATe"~T'="_~ ~'TGTATCACAATGCATTAT T :."~'~'~'~'~CCTCCTTTCCT? ~~. CAAAC T
a, TACCACTG T A T TTACCACTTCTAAGAGTGAC T a:~C G~=.CGGGCCAGATGACCC':'TGAAG
TAGTCA T T AT G T T.G CAATAAATGAAG C CTGAAACAG G T : '-":'T'I'TACTT C CF.C T T
T AAT
CCTTAGAi~rIT =":' ~ :'~'GGCAACTTCG CATAT'~ -"" ~~., y "';,ew.~C'rlCT.iGTGTATAAG T ATi~A
ATTTAAATi~~-,'r.C .:...ATTACTTTTGCATAT T ~""A~ T "' C"' T TATATGGTAG T T AT
~'""~'"
TATAACAGG.-, T A T T AACF~TAAGTTAAATC C =~. T G T:~ T ~":'GAAAT T GTTACAG: ~G
C T =' ~' CCTCT:'TAC"'"'W":,ACAGCAAAA.AAGTGGGGGGCA:nT T G TAGTCCTGTCAT':'TAAG T
TATG T AAA, T ~' =':,ATCATTATTTTGATG C':":"~ ~C:-, T TC T CATG T GThATATA T G
TTTTTG T:~T CCAC T CATATATT':' C:~AGa.A~",~,T T ~=.TGT T ~ T:-.G C C C'_' GTTTTAAG~, T,=, T ~ATGAAG CAT C'. C~.,a,C':' ~' G;~,G~., T C:~AG T CAAAG T
.'.=, T ~,r.' TCAGG:-. T C "'.. _ ,...,......., w7~ ...., ,.,. .. _ .....,. _ .. _ _ ...
...,.. ,..,...............
VL'1VV1 V.w.~GCIlIVVAVP'lVl'1'_ VtIVM_TT~ty~lL.l1V11 _ VVVL.t'\~ 7.
T~T~~_ n w1 _ I1 111IW 1111 w I- w TTT~
AGl1 ~ VVtIW VM1 lf~ffl l.~ VTAGitIWnVy:~MVa~a'M1 ~ VVtIVVtIVMitIT~
AGC~.~..1._..,..__ _ .._w ..,...1_ .. ." T,.T T.. _ _ _ ....... ......w n _ _ ,..._ _ _ ~. w ~VVMVta'1V'.itlvl C'1VMCMiV~~'1C1C~V1V~~.VVt~VtfTtl~T,-Ml~yy~
SUB'TITUTE SHEET (RULE 26) w0 00/05360 PCTlCA99/00656 TABLE 3 human SARA2 Continued ATGGCAACCTGTTATAATTTGTGARAT:TATTGAAATGGTGTAAGATGAAA1CAATTG
CATATCAAACCCAATTTATGTTTTCTAAATATAGTGTATGTATTCTGCCATGSAAGTA
ATTGAACAGTCTTAAAATAACCAAATGGTAGAGGGCTGTTCCATGATGGGACAGCTTT
GGATTTGTTTTCATAAAATCTCTACATTCAATAAAAATTGGAATTATGTGCCTGAAGT
TTGGAGGCACATTTTGAAGT
SUBSTtTUTE SHEET (RULE 26) WO 00/OS360 PC.'tlCA99/00656 ~6 TABLB 4 human SARA2 - Seauence ID N0s4 I~SYFRAAVSDLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQRTCLLPK
DQECVNSCASSETSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGG~S~~IQP
LYMGRCSKPICDLISDMGNLVHATNSEEDIKKLLPDDFKSNADSLIGLDLSSVSDTPC
VSSTDHDSDTVREQQNDTSSELQNREIGGIitELGIKVDTTLSDSYNYSGTENLKDKKI
FNQLESIVDFNMSSALTRQSSKMFHAKDKLQHKSQPCGLLKDVGLVKEEVDVAVITAA
ECLKEEGKTSALTCSLPKNEDLCLNDSNSRDENFKLPDFSFQEDKTVIKQSAQEDSKS
LDLKDNDVIQDSSSALHVSSFmVPSSLSCLPASGSMCGSLIESKARGDFLPQHEHKDN
IQDAVTIHEEIQNSVVLGGEPFKENDLLKQEKCKSILLQSLIEGMEDRKIDPDQTVIR
AESLDGGDTSSTVVESQEGLSGTBVPESSDCCEGFINTFSSNDMDGQDLDYFNIDEGA
KSGPLISDAELDAFLTEQYLQTTNIKSFEENVNDSKSQMNQIDMKGLDDGNIh'NIYFN
AEAGAZGESHGINIICETVDRQNTIENGLSLGEKSTIPVQQGLPTSKSEiTNQLSVSD
INSQSVGGARPKQLFSLPSRTRSSRDLNKPDVPDTIESEPSTADTVVPITCAIDSTAD
PQVSFNSNYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQFTWVPDSEAPNCM
NCQVKFTFTRRRHFiCRACGKVFCGVCCNRKCKLQYLEKEARVCWCYETISKAQAFER
MMSPTGSNLKSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKBQKRV
WFADGILPNGEVADTTRLSSGSRRCSEDFSPLSPDVPMTVNTVDHSHSTTVEKPNNET
GDITRNEIIQSPISQVPSVEKLSMNTGNEGLC'~TSGSFTLDDDVFAETEEPSjPT,~'uLV
NSNLPIASISDY'RLLCDINKYVCNKISLLPNDEDSLPPLLVASGEKGSVPVVE=PSH
EQIILLLEGEGFHPVTFVINANLLVNVKFT__FYSSDKYWYFSTNGLHGLGQAEI=ILLL
CLPNEDTIPKDIFRLFITIYKDALKGKYIENLDNITFTESFLSSKDHGGFLFITPTFQ
KLDDLSLPSNPFLCGILIQKLEIPWAKVFPMRLMLRLGAEYKAYPAPLTS_TRGRKPLF
GEIGHTIMNLLVDLRNYQYTLHNIDQLLIHMEMGKSCIKIPRKKYSDVMKVLNSSNEH
VISIGASFSTEADSHLVCIQNDGIYETQANSATGHPRKVTGASFWFNGALKTSSGFL
AKSSIVEDGLMVQITPETMNGLRLALREQKDFKITCGKVDAVDLREYVDICWVDAEEK
GNKGVISSVDGISLQGFPSEKIKLEADFETDEKIVKCTEVFYFLKDQDLSILSTSYQF
AKEIAMACSAALCPHLKTLKSNGMNKIGLRVSIDTDMVEFQAGSEGQLLPQHYLNDLD
SALIPVIHGGTSNSSLPLEIELVFFIIEHLF
SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCTlCA99/00656 TAHL$ 5 aSxRAl - Seauence T_D NO~5 CTGTAAGTTTGACTATGTAGGAAAGCATTTCTGTTATC=':~TGAAGTATGTTTTAGAGT
CAGACCAATAAC TAAACGGTTTTCTT TTTTTTG T T'-',:, T :"~ C C C C T CAGATGAGAC T G
CTCTCCAAAGCTATTAGATGCTAAGTGGAATCAAATC:':'AGAACCGCATTCACATAAA
GTCGCTGATAACTCCGCCCTTGACAATGTCTGTAAATCAATCATTGCTATTGAAGCTC
ATCTCAAAGTCAGGTCACCCGGCTTGTCAGCCCTTGTG:~.GGTCCACATATGTGAATGG
AGAAGTAGGTATTGTGGCACCTGAAATGCCCAAAATGGTGATAGGAGACACCATTATG
GCAGAGGATTCACTTTTTAACAACACTGGTCCCTCTGAAATTGTATGCAACCCATCTA
CTGTGGAGAGTCAAAGTTTACAAGCTTTAGATGATCAATCAGTGAATATTCACAATGA
ARAAAGTGTTCTGCTCGCTGATGGCTTTTCACCATGCAGTAGCCCCAAAAGTATTATA
AACTTTGACTGCTTGACCATGGATAACGAAATGCCTTTGCACAGTCA.AATGAGTGTTG
ATGACAATGACAAAGAAACTGTAACAATTTCAGTCCTTCCAACAATCATACAGGATAC
TAGTRACGTAAGCACAGACCCAGCTATCAATAAACCTGGCACTAAAGAACCCCATAGA
GCATTAAAGGAAACCACATCAGTTATTCTGCCTGAAATAAAGCCTTACTCCACATGTG
CTGCCCTTTCGTTTGAAAATAACAATAAGGTTCCCAGTTATCAATTAAATAATACAGA
TCTACTCAGCGTTTCACCAGTGGTTGAAGCATGTAGTGAGCAGCAGCAAAAACATACA
TCTTCCTTGCATGAAGAA,AAACTTTTTGAAGGTGTTTCTGCAACGGAGTCCTTTGCAG
CCACTGCTGCGGAAACTGTACTGGATAATGAGGCTCTCC~TAGTGCTGAATTCTTTGA
CATTGTTGTAAAGAACT:'TTCTGACTCTTGTGTGATTAATGGCGACTTGACTAAAAGT
TGTGGCCTCTCTCAAGAAAGCAATGAAAAGTTTTGTGCAAGTAAAGAGTTTGAAGGAG
GGGTAGATGCTAATGTCTTGTTGGAAA,ATGCATGTGTAGCTTATAAAGAAGCAATAGA
TTTGCCTGAAGAAAATGGAACTAATGCACCAATGTCTCTGTACAATGGGTGTGATTCC
TATGGAATGAAAAACCCAGCCGTAGCTCAARACCCAR.AGAATTTACCTTCAAAAGAAG
ATTCTGTGACAGAAG:~AAAGAAATTGAAGAAAGCAAGTCAGAATACTATACTGGTGT
TTATGAACAACAAAGAGAAGATGATGTTACAGAGAGAGGTGGACTTCTGTTAAATGCT
AAGGCTGACCAAATGAAGAACAATTTGCATAGTCTTTGTAATCAGGTTCCATCCATGC
ATGGGCAAACATCACCAAAAAAGGGCAAGATTGTGCAATCTCTCAGTGTTCCATACGG
TGGAGCACGCACTAAGCAGCCAACTCATCTCAAACTCCATATTCCAAAGCCATTGTCT
GAAATGTTGCAGAGCGATCTCATTCCTCCAAATGCTGGCTGCAGCTCTAAATACAA.AA
ATGACATGTTAAACAAATCAAATCAGGGGGATAACCTGATTTCAGAATCACTGCGTGA
GGATTCTGCAGTGCGCAGCCCTGTTACTGATGCTAATGGTGATTTCCCTGGAGAATAC
AGGGGACCTGGCAGCTTGTGCCTTGCAGTGTCTCCAGACAGCCCAGACAACGATCTGC
TTGCCGGGCAGTTTGGGGTACCCATCTCTAAGCCATC"~'r.CTACTCTAGGGGAAGTGGC
TCCAGTCTGGGTGCC:'~GATTCCCAAGCACCAAACTGCATGAAGTGCGAGGCCAGATTT
ACATTTACCAAAAGGAGGCATCACTGCCGAGCTTGTGGAAAGGTGTTCTGTGCTGCTT
GTTGCAGTCTAAAATG"..AA.ACTACAGTACATGGATAAAAAGGAGGCTCGTGTGTGTGT
TATTTGTCATTCTGTGCTTATGAATGCTCAAGCATGGGAGAACATGTTAAGTGCATCG
GTCCAAAGCCCAAATCCAAATAATCCTGCTGAATACTGCTCAACTATCCCTCCGATGC
AGCAGGCACAAGCTTCAGGAGCACTGAGTTCCCCACCTCCCACTGTCATGGTGCCAGT
GGGTGTGTTAAAACATCCAGGAACTGAAGGGTCACAGTCAAAGGAACAGCGCCGTGTT
TGGTTTGCTGATGGAATATTACCCAACGGAGAGACTGCTG.=.CTCAGATAATGCAAACG
TAACTACAGTGGCTGGGACACTTACTGTGTCACATACCAACAATTCCACATCTTCAGA
GTCTGAGAACACCTCTGGATTCTGTGGAAGTATAACTCAGGTTGGCAGTGCAATGAAC
CTTATTCCAGAAGATGGGCTTCCTCCTATACTAATCTCTa.CTGGAGTAAAAGGAGATT
ACGCAGTTGAGGAACGCCC:'TCCCAGATGTCTGTGATGCAGCAACTAGAGGAAGGAGG
ACCAGATCCTT T GG T'_"=":' T G T TCTAAATGCAAATC':'""~"'GGC Ca T GG T TAAGATCGTG
AACTATGTTAACAGGAAATGCTGGTGCTTTACTAC"~AGGGAATGCATGCAGTGGGCC
AGGCTGAGATCG THAT CC T G TTGCAGTGCCTGCC'='u AT G:..,GAAG T GCCTGCCGAGGGA
CCTGTTTAGC CA T'="""';~ T TGAGC T GTATCAGGfsGGCAA T :',~ CAG;~ T AATG TAGTGGGG
AACCTGGGGC~-. T T C C""" C ~'~ CAGCCAGAGTTTCC'_' GuG T AG T AAGGAT CATGGTGGAT
TTCTTTATGTTGCACCAACCTACCAGTCCCTCCAGGAC:.:',J"T'_CTTCCTGCAGAGCC
GTACTTGTT i V Vt~.A 1 ~ _ _ _ ~..TT~AAAAGTGGG.:.aG:~ C'.' C CA T GGG C ,.
""' " ~AAAGTGTTCCCC
ATT C GGC T T AT G C T ~;. G T T':'AGGTG CAGAATACAGA T '=' ~ .."-.C C C:~T G T
C C.=.CT CTT CA
GTGTTCGATACAG:,:~..C C':'CTGTTTGGGGAAACC G W..CnC.:..C CATCAT TAATG T T C:' AGCCGAT~C.=.vevaAC.'~'nT C~,GTe,TACTCTGCCAV T G.; T G C~,GV.aCTTaG T GGTGG~aT
ATGGAAG ~, ... . . _ .. . ...........FTC~~~,. ,. ~_ _ ~.. ... .... ,.. ,. ..
,."
1'tfVtltZtW L-~i.T~VL.tlil ~.wtSVVSZtiita'..7tli~yL,tinTVt1Vt11Vl'lTVt1 AAGCAATGAA - -- _ _ ..".., ...." .., .......,..,.,.... ~ _ ..._ ,. _ _ _ .. _ .."...... _ ., 'tffl~'lip.~:il~lVtfV'111GiVlaVVI.V.a~illVVilV't'11VW ~.~~L,CAGt~l SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCT,'CA99/00656 ~8 TA9LE 5 - ZSARA1 Continued GGCAGACTCTCACCT TGTGTG T GTG ~~AAACGATGATGGCAATTaCCr.G.:.C C ~.=,GGCA
ATTAGTATCCACAAACAACCACGTAAAGTGACCGGGGCCAGCTTCTTTGTC'C=CAGTG
GTGCACTAAAGTCTTCTTCCGGATACCTGGCCAAATCCAGCATAGTAG~.G~:.TGGGGT
AATGGTTCAGATCACCGCAGAGAGCATGGATGCCCTCAGACAGTCCCT';'CGGGAGATG
AAGGATTTCACCATTACATGTGGAAAAGCTGATGCAGAGGAGTCACAGG:..aC~.TGTCT
ATGTCCAGTGGGTGGAGGATGACAAGAACTTTAACAAAGGAGTT':TTAGTCCAATCGA
TGGCAAATCAATGGAGTCTGTGACCAGCGTCAAGATTTTTCATGGCTCAGAATACAAA
GCTAGTGGAAAAATAATTCGCTGGATAGAGGTCTTCTTTCTGGACAATGAGGAGCAAC
AGAGTGGCCTGAGTGACCCTGCTGATCACAGCCGACTCACTGAAAATGTGG.:CAAAGC
ATTCTGTTTAGCGCTTTGCCCACACCTCAAGCTACTGAAGGAAGATGGAATGACCAGG
TTAGGTCTGCGGGTGTCACTGGACTCAGACCAGGTTGGATACCAAGCTGGGAGCAATG
GGCAACTCCTGCCTGCCCGATACACCAATGATTTGGATGGTGCTTTGGTACCAGTGAT
ACACGGGGGCACATGCCAGTTAAGTGAAGGGCCTGTCAGTATGGAGCTGATATTTTAT
ATCCTTGAGAACATCTCCTAGGAAAGACACATGTGTCTCCTCACAAACTGCCATCGCC
CAAACCATTTGCACTTTAACCGCAAAAGATTCATTTTTCTTTTCTTTTGCTAACACTA
GTATTAGGTCAGGGTGCGAGAGGCAGACACCTGAACTCTTAAACC:TCTATGCATTTT
CACAGTAAGGATCAAGCTGCAGCTGGGAATTTCCTGTTACTAATCCAATGTGGGACGT
TAGAAGTGATCGGTGGCACTGACTATCTAGCTGTTCAACCTTCTCTGGCTCCTCTAAG
GACTCTAGTGCCAGGGGGTGAGACATTCAAGTTTAAAACGAAAACTCTAAATACAATC
AGGAATCTCACTCTGACCTCATTTAAATCATCACTGCGACTTTTTTTCCTGCTCGCAT
TCTTTATTTTGCATCTTACTCAAGTTTACATTGTCAAGACCAGCCTAAGCCTTCAGTC
CTTTCTCAATTAAACTACTCGTGCATGGCAAGGAGACTTTCGTTGCACAGCCTGAAAT
ATACCAATCACTTCCCAAACCACAAGCATGAATCCAACGTTTTCCTGACTGGTTGGCT
CTGCTGTGAAAGGGACAGCAATATTATTTTTCTACAGTTGACAAAACTTTTGTCTATG
TCTGTGTCTCTCATGGGGGATTTGTTGCCTGATGGGCAGCCTCCGGAGAGAAGAATTC
CACCCGTGTGTAATATACAGTCTAAGTGTATGGTCTGCTATGTAACACCTGTTGCGCA
GTGCAAATGCACTGACTCTCTGGAAGGCTATAGAGTTTTAAAAACGGTTAGTCTTTTA
AT~~AA.A.AAAA
SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCT'1CA99100656 TABLB 6 ZS~1 - Seauence ID NO_s6 MPKMVIGDTIMAEDSLFNNTGPSEIVCNPSTVESQSLQALDDQSVNIHNEKSVLi~IDG
FSPCSSPKSiINFDCLTMDNEMPLHSQMSVDDNDKETVTISVLPTIIQDTSNVSTDPA
INRPGTKEPHRALKETTSVILPEIKPYSTCAALSFENNNKVPSYQLNNTDLLSVSPW
EACSEQQQKHTSSLHEEKLFEGVSATESFAATAAETVLDNEALRSAEFFDIVVKNFSD
SCVINGDLTKSCGLSQESNEKFCASKEFEGGVDANVLLENACVAYKEAIDLPEENGTN
APMSLYNGCDSYGMKNPAVAQNPKNLPSKEDSVTEEKEIEESKSEYYTGVYEQQREDD
VTERGGLLLNARADQMIQJNLBSLCNQVPSMHGQTSPRRGKIVQSLSVPYGGARTKQPT
~KI~iIPKPLSEMLQSDLIPPNAGCSSKYHI~TDMLNKSNQGDNLISESLREDSAVRS PV
TDANGDFPGEYRGPGSLCLAVSPDSPDNDLLAGQFGVPISKPFTTLGEVAPVWVPDSQ
APNCMKCEARFTFTKRRHBCRACGRVFCAACCSLKCKLQYMDKKEARVCVICHSVLMN
AQAWENMLSASVQSPNPNNPAEYCSTIPPMQQAQASGALSSPPPTVMVPVGVI,I~ipGT
EGSQSKEQRRVWFADGILPNGETADSDNANVTTVAGTLTVSHTNNSTSSESENTSGFC
GSITQVGSAMNLIPEDGLPPILISTGVKGDYAVEERPSQMSVMQQLEEGGPDPLVFVL
NANLLAMVKIVNYVNRKCWCFTTKGMHAVGQAEIVILLQCLPDEKCLPRDLFSHFVEL

RWETPWAKVFPIRLMLRLGAEYRLYPCPLFSVRYRKPLFGETGHTIINVLADFRNYQY
TLPVVQGLVVDMEVRKTSIKIPSNRYNEMMKANBJKSNEHVLAIGACFNQMADSHLVCV
QNDDGNYQTQAISIHKQPRKVTGASFFVFSGALKSSSGYLARSSIVEDGVMVQITAES
MDALRQSLREMKDFTITCGRADAEESQEHVYVQWVEDDKNFNKGVFSPIDGKSMESVT
SVRIFHGSEYKASGKIIRWIEVFFLDNEEQQSGLSDPADHSRLTENVAKAFCLALCPH
LKLLKEDGMTP.LGLRVSLDSDQVGYQAGSNGQLLPARYTNDLDGALVPVIHGGTCQLS
EGPVSMELI:YILENIS*
SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCT; C.~99/00656 T71BLE ? aSARA2 Sentience ID NO~?
AGTTTTATTTTCAGAAGACG~~GCATCTTTATTTTAAACATTAAGTTTCACTATGTAG
TAAAACATTACTGTTGTATATACAGTATGTTGTAGACATATAACGTAACTGTTTGCTT
TGTGCTTTCTTTCCTCCTCAGATGAAACTGTCTTTCCAAAGCTGTTAGATGCTAAGTG
GAATCAATTCTTAGAACCACATTCGCATAAAGTCACTGATAAACCAGCTCTTGACAAT
GTCTGTAAATCAATCATTGCTATTGAAGCTCATCTCAAAGTCAGGTCACCCAGCTTGA
CAGCCCTTGCAAGGTCCACATATGTGAATGGAGAAGTAGGTATTGTGACTCCTGAAAT
GCCTAAAATGGTGATAGGAGACACCGATATGGCAGAGGATTCACTTTTTAACACTGGT
CCCTCTGRAATTGTATGCAACTCTATTGTGGAGAGTCAAAGTTTAGAAGTTTTAGATG
ATGTACCAGTGAGTATTAACAATGAA,A,AAAGTGTTCTTCTTGATGATGGATTTTCTCC
GTACAGTAGCCCCAAAAGTGTTCTAAACTCTGCTTGCTTGACCATGAATAACGGAAAG
CCCTCACACGGTCAAAAAATTGTTAATGACCAAGATAAAGAAGCTGTAACAATTTCAG
TCCTTCCAATGATCATACAGGATACTACTAACGTAAGCACAGACCCAGCTTTCAATAA
ATCTGGCACTGAAGAAGCTTATAGTGCATTAAAACAAACCACATCAGTTATTCTGCCT
GAAATAAAGCCTTATTCCATACAGGCTGCCCTTTCATGTGAAAATATCAACAAGATAC
CCAGATGTCAATTAAATAATACAGATCTACTCAGCATTTCACCAGTGGTT'GAAGCATG
TAGTGAGAAGCAGCAAAATCATACAACTTCCTTGCATG1~~AAAAAAACTTGCAGCTGTG
TCTGCAACTGCGTTCTTTCCAGTCACTGCTGCTGRAACTGTACTAGGTAATGAAGCTC
TCCATAGTGCTGATTTTTTTGACATTGTTGTAAAGAACGTTTCTGACTCGTGTGTGTT
TAATGGTGACCTAACTAGAACTAATGGACTCTCACAAGAAAACAATGAAATGTTTTAT
GCAAGTAAAGAGTTGGAAGGAGGGGTAGATGCTAATATCTTATTGGAAGATGCATGCA
TAGCTTATAAAGAAAGAATAGATTTGTCTGAAGAAAATGGAACTAATGCACCAATGTA
TCTGTACAATGGGTGTGATTCCTATGGAATGAAAAACCCTGCTGTACGTCAAAACCCA
AAGAATTTACCATCAAAAGAAGATTCTGTGACAGAAGAAA.AAGAAATTGAAGAAAGCA
AGTCAGAATACTATTCTGGTGTTTATGAACAACAGAAGGAAGATGACATAACTGAGAG
AGGTGGAGTCTTGTTAAATGCCAAGGTTGACCAAATGAAGAACAGTTTGCATAGTCTT
TATAATCCGGTTCCATCCATGCATGGGCAAACCTCACCAAAAAAGGGCAAGATTGTGC
AATCCCTCAGTGTTCCATATGGTGGAGCTCGCCCCAAGCAGCCAACTCATCTCAAACT
CAATATTCCACAGCCATTGTCTGAAATGTTACAGTGTGATCTCATTCCGCCAAATGCT
GGATGCAGCTCTAAA,A.ACAAA.AATGACATGTTAAACAAATCAAATCGGGGGGATAACC
TGATTTCAGAATCACTACGTGAGGAAGTGCACAGCCCTGTTACTGATACAAATGGTGA
AGTCCCTCGAGAAAACAGGGGACCTGGCAGCCTGTGCCTTGCAGTGTC':'CCAGACAGC
CCTGACAATGATCTGCTTGCTGGACAGTTTGGGGTACCCATCTCTAAGCCATTTACTA
CTCTAGGGGATGTGGCTCCAGTCTGGVGTGCCAGATTCCCAAGCr.CCAAACTGCATGAA
GTGCGAGGCCAGATTTACATTTACCAAAAGGAGGCATCACTGCCGAGCTTGTGGAAAG
GTATGTAAAGAAATGTGGTGTTTCATCAGGGCAACAGTAATCACGGCAAATTATTCAT
AACAAAATGTGTTCAGCAGATTCAGTTAAAGTAGACTTATAAGT~ACACAGTAACAAT
TCATCTGCTCAGCCTCATT':'TGAAGTAGATAAAATATATTTTATTAGGAAACTCTGGG
GAGATATAAGGGAAAGCTTGCCTAAAAGTAGATGTTCTGTATATTATTTGGTAGTCAA
AGATGATTTCATGAAAAAAGGTTATTTGTAAAAAGTACAAAATGGG~AGAGACTAGAC
AATAAAAAGTAAGGAGTAAAAAACTAGGTATGTAACGTATATTAAAATAATTTTATGA
TTTTAATATTTACTGCACATT.'TCTACAGTGCAGTGATTTGTATAACCATGCAATTAT
CAAATGCTTAGTGCCTTCACACAAAGTG CCTTTAATAAA.AAT T AT'r"""'ATAAATTATC
ATATTTTCTTTATATGTAGTCATCATCTTTTTTGTCTCATTTC':'~'GGAATCGTTCTAC
TTATGTTCTACTGATATGTT':":'TTACCCGAGACCTATCTTGTCC~'~=AAAGTAATTGG
CTTGTCAACTGGCTGTAGGG;~W,T T'ITCAGAGTTATAGC'~'=AGT:~C'~'GT I'AATGAGCC
ATAGGTTGAAATAGTGC T C'~AGATTTr,CATGTTGTACAACAG T T A:'='"CAATr.TGTGT
AGGGGGGGGG
SUBSTITUTE SHEET (RULE 26) WO OOI05360 PCTlCA99/00656 T~8LB 8 ZSARA2 Seauence ID N0:8 pYSSPRSVLNSACLTMNNGRPSHGQRIVNDQDREAVTISVLPMIIQDTTNVSTDPAFN
KSGTEEAYSALRQTTSVILPEIRPYSIQAALSCENINRIPRCQLNNTDLLSISPVVEA
CSERQQNHTTSI,HEKRLAAVSATAFFPVTAAETVLGrtEALHSADFFDIWF~TVSDSCV
FNGDLTRTNGLSQENNEMFYASRELEGGVDANILLEDACIAYRERIDLSEENGTNAPM
YLYNGCDSYGMRNPAVRQNPRNLPSREDSVTEEREIEESKSEYYSGVYEQQKEDDITE
RGGVLLNARVDQMRNSLHSLYNPVPSMHGQTSPKRGRIVQSLSVPYGGARPKQPTFiLK
LNIPQPLSEMLQCDLIpPNAGCSSRN~Q~TDMLNKSNRGDNLISESLREEVHSPVTDTNG
EVPRENRGPGSLCLAVSPDSPDNDLLAGQFGVPISRPFTTLGDVAPVWVPDSQAPNCM
KCEARFTFT~GtRHIiCRACGKVCREMWCFIRATVITANYS
SUBSTITUTE SHEET (RULE 26) WO 00/05360 PCTlCA99/00656 hSARA AE IKR'I~YS~O~AYE E CG NYlVYIYWMN OK11T~NOlODBNh~hS~lC .~
XSARA ~rK TI AED fNNfTIGPSE'IV~NPSTlI~B~-. p .....vh~yNlEKSVtJADGfSIe35r - fmn hSAfv1 ac L ENROTDOfBiSINES D NiE ,,l~ t KT v ITSI StASY(C7S S t~t00G51 K013~5 tS~
XSARA cO~ YO~...............1LN= Lf~N .. Tiy~~TLSNVS~ AI~N~tlr. ~Kfr~o ttt hSARA 1 St DI ItS TOGP.f v K(~~v~E~KISSIR~INSF~~ILA1KA NTS~LN~~FE'V6 111 XSApA t c E T~ Y I t~P E I ~I V 3 T~A~ F ELN~,~,~,,~, KL~'I 3 v NN - N p . v C

hSARA tttKP011PNGIGRNNOCERCSOCtviHEVp~ENrEwE~tN~ESE30D~t~K~KtN~DSOV C
XSARA aTES-~-~~-~---..............cA AA VtON IL AE
FDI~VCLSL'.iSOSC~UItI~~L'.'O~TKIS ~C
hSARA KOIS~~TNGOS~CVGLA, AGt ~~f~~FSTVI~~NV~ GCDSVGII ~~cv K LPS 791 XSARA NEK aSKEfC4J1---.. .vpANVt~E ACVA K 1 LPEEN~~SL~~C~6w3LGL~
OCDfYDItKIrL6JIAl.~AON KNLPf107t1 XSARA ~DfVTEIKIIEEfKf ITGV~E 0~ O~Y EIS LLLNATII~p~l~1''NSL~S
VIStINKtOIfIKIKGKSV tSVPV~711 hSARA A OPSNLIL0,1~KPLiD~ ~L N~ f A S N~,. N011GKA L E SA1 YCSP.~tGNISNV NGE

XSARA ~~ O~TN~KLN71K~LSE~S~t I~r-AD)ct~ 81D11LNK! ONLI~ESLRE061AVR3VVT
ANOOIFPGEQIIGI a71 ~fw111f 1 hSARA ~RP LAtAPDiPOND_R GOfGI AR
~._LGEYAPVWVPDi0A1NC11_KCEARFTFTKRRNNCRACOKYFGASGGi 117 XSARA '~'6Ct) - l tAVSIDfIDNO L GOFOVP t S'CP.F:TT-LOEVA~VWV1DlOA~NCitKG~~RF:TFTKIIRNNCRACOKVFCAACCSLI SSE
t hSARA C YOR YCYJLN VlIWAOAWENYYiA _NPNN1A
.~_.ifl.~lLpaAOAG_GALSSPIPTVIIV~YOYiKN 117 XSARA CK iIOKKEARVCVtCNi iNAOAwENtlli~f f~N1NN~~.CfTTPP400A0Ai0ALiiIPPTVYVIVOVIKN i7t ~ P~2 ___-hSARA -OppVWPA OtLPf~GE DAAKITLA ._ IVKIV~T~LPAETOI SGiI-TOV SIY~T87 XSARA T - LOpRVWFADGfLTNOE DSD-- QTLT f TNNSTS -ENT CGfTTOV -~~ TQS
hSARA NLJPEOGLIII.LIf OV~KOD_Y;AVEEK1f01iY110OLE0a010V,LVFV,LNANLLSWKI.VNVVNRKCWCFTTKGIINqYG 877 ><SARA NL~IPED01PPIC'IfTOVKGDYAVEE11~f01tfV1100LEE00IDPLVPVLNANLfLAWKI-VN1'VNRKCWCF7TKOIINAVG T85 hSARA SELVI:LLOCL10EKCLPK01 N iVOLT.RD LAONYYS LGNfF OSFLOiKENGGf.LYVT
vOSLODLYLP.T ELF fi3 :SARA aEIVICLOCLPDEKCLIRDtilS ' "~FVEL'fOE~IIAONVVIG LONf Of FL GSKONGGFITVaP
YOSLDDLVLPA ~Yli 88f hSARA li'IOKriE.TPWAKVfPIRLYLRLGAEVRLT CPLFSVpFRKPL O
aNTt:AtNtLADfRNVOVTLPVVOOLVVD11EYRK 1017 '.-_.
XSARA '7lCtCKWET~WAKVFPStI~yLR~'GAEY!L'YPCPLFSV11y11K1L~FOETONT~
IGIV~AOFRN110YTL1VVOGL:VVDHEVRKTIItf hSARA IKIPiNp~NEIIYK~YWKiNENVL ACfNE DSNLVCYONOOGNVOTOA15.1. N
P_RKVTGAiFFVFSGALKSSiO 1117 XSARA I KIPfNp~NEAIYItAINKfNENVLAIWACPNOa DSNLVCVDNDDONItOTOAISt NKGPRKVTOAfFFVFSOALKSSiOY~ tD25 hSARA AKfi_1 VE_DOV11V01 TAE N S ROALREWLDFTI TGGKADAEE EN t I~ DWV ODD_K S
OY,Y P i OGK511ET l 1197 XSARA -AKfl7VEDGVYVO(TAES~DA~ROSLREtucDFTITCOKADAEE EHV ~bwyEDDKNicNKGVIF
PIOGKSAESV ~1 Ittlf hSARA IfJtGiEYK KYIIR T V _LENODON~NC
iDPAONSRI:TENYAK~fGLALCPNLKLLKEOGN1TKLGLR1ITLOSDOV.G 1177 XSARA IfNafEYK KIlR I YFFI:DNEE001SG-fDPAONSRLTENVAKAiCLALC1-NLKLLKEOGAtTRLGLRV3LDSOOVO ttlS
hSARA AGtN ILPSOY OLDS ~/~L~.V~~(~ KtliGOAGOLiEOPYV ELI_fYILENI . tJZ7 XSARA b~OfN L 11R.~ DLO Ia=r/t'VIiNGGT=OLSEOPVS ELI FYILENI . t37S
_ TABLE 10 hSARA Sf7~ ~~~~ ~ 5~. w .~.tD./'nl. -E~y I~SV 655 XSARA St0 GE ~ ~P PNG11KCEIAR ~ KRpNNCRAGOKVFC A~ SiLkCKLCIIYaDKK.EhRVCI'lI~SV
K1AA0305 777~'- GO~~~T-T~~ APNG11f7tONK IIrr~
KRRNNCRACOKVFCCLfiC(:FKCKLDKl:EKF E~ VCNV TI 800 FGD7 nO~OR~1~~T I ~(~rrT~IAT~C01E ~~K11RNNCKACGNV GkCS~~AALNkhJNNR.~~V,C%'0 A

lin -tS~I'~iiA1 ~. -'.~E Rp~'VG~F ~',NiTTRKNNG1ACG01~GKC55R17~t'~. p'fG ~
EK~JPVCEP Y 0 ytg Hrs-2 t53AAERAP~ D. . ~AEE~HPCtavOFE GNP tRKHNCRACGOIFCGkCS5Kn6Gl! PK ~G ~

EEA~13t1TOAtN K E~T~IEF~OFTC~KuIF4~-=T?.rpRNNCR~GG11FC~EtSAKNN~'~=SSK~-r.-.'v~VCDA FND~t408 GTLS~.6.....rD.W...... -.C..C...a=.....~~~.~~.~........-..-..
SUBSTITUTE SHEET (RULE 26)

Claims (44)

WE CLAIM:

1. An isolated polynucleotide comprising a nucleotide sequence encoding a SARA protein or a splice variant thereof.

2. The isolated polynucleotide of claim 1, wherein the SARA protein is a mammalian SARA protein.

3. The isolated polynucleotide of claim 1, wherein the SARA protein is a non-mammalian SARA protein.

4. The isolated polynucleotide of claim 2, wherein the SARA protein is a human SARA protein.

5. The isolated polynucleotide of claim 3, wherein the SARA protein is a Xenopus SARA protein.

6. The isolated polynucleotide of claim 1, wherein the nucleotide sequence is selected from the group consisting of (a) a nucleotide sequence encoding the amino acid sequence of Sequence ID NO:2;
(b) a nucleotide sequence encoding the amino acid sequence of Sequence ID NO:4;
(c) a nucleotide sequence encoding the amino acid sequence of Sequence ID NO:6;
(d) a nucleotide sequence encoding the amino acid sequence of Sequence ID NO:8; and (e) a nucleotide sequence encoding a SARA protein and capable of hybridising to a sequence complementary to the nucleotide sequence of any of (a) to (d) under stringent hybridisation conditions.

7. The isolated polynucleotide of claim 4 comprising the nucleotide sequence of Sequence ID NO:1 or a degeneracy equivalent thereof.

8. The isolated polynucleotide of claim 4 comprising the nucleotide sequence of Sequence ID NO:3 or a degeneracy equivalent thereof.

9. The isolated polynucleotide of claim 3 comprising the nucleotide sequence of Sequence ID NO:5 or a degeneracy equivalent thereof.

10. The isolated polynucleotide of claim 3 comprising the nucleotide sequence of Sequence ID NO:7 or a degeneracy equivalent thereof.

11. An isolated polynucleotide comprising a nucleotide sequence of at least 10 up to the total number of consecutive nucleotides of a sequence selected from the group consisting of Sequence ID NO:1, Sequence ID NO:3, Sequence ID NO:5 and Sequence ID NO:7 or a nucleotide sequence complementary to any one of said sequences.

12. An isolated polynucleotide comprising a nucleotide sequence encoding at least one functional domain of a SARA protein.

13. The isolated polynucleotide of any one of the preceding claims wherein the polynucleotide is a polydeoxyribonucleotide.

14. The isolated polynucleotide of any one of claims 1 to 11 wherein the polynucleotide is a polyribonucleotide.

15. An isolated polynucleotide encoding a SARA protein FYVE domain.

16. A recombinant vector comprising the isolated polynucleotide of any one of claims 1 to 15.

17. A host cell comprising the recombinant vector of claim 16.

18. A process for recombinantly producing a SARA protein or a fragment thereof comprising culturing the host cell of claim 17 under conditions whereby the SARA protein or fragment thereof is expressed and isolating the expressed SARA protein or fragment thereof.

19. A substantially pure SARA protein.

20. The protein of claim 19 which is a mammalian SARA protein.

21. The protein of claim 19 which is a non-mammalian SARA protein.

22. The protein of claim 20 which is a human SARA protein.

23. The protein of claim 22 comprising the amino acid sequence of Sequence ID NO:2 or Sequence ID NO:4.

24. The protein of claim 21 comprising the amino acid sequence of Sequence ID NO:6 or Sequence ID NO:8.

25. A SARA protein that is at least 50 percent identical in amino acid sequence to the sequence of Sequence ID NO:2 or Sequence ID NO:4.

26. The protein of claim 25 wherein the SARA protein has a FYVE domain having at least 65 percent identity in amino acid sequence to the FYVE domain of hSARA1 (Sequence ID NO:2) and a C-terminal sequence of 550 consecutive amino acids which have at least 50 percent identity to the C-terminal 550 amino acid residues of hSARA1.

27. The protein of claim 25 wherein the SARA protein has an FYVE domain having at least 65 percent identity in amino acid sequence to the FYVE domain of hSARA1 (Sequence ID NO:2) and wherein the portion of the SBD
corresponding to amino acid residues 721 to 740 of hSARA1 has at least 80 percent identity with that portion of hSARA1.

28. A substantially pure polypeptide comprising an amino acid sequence of at least 4 up to the total number of consecutive amino acids of a sequence selected from the group consisting of Sequence ID NO:2, Sequence ID NO:4, Sequence ID NO:6 and Sequence ID NO:8.

29. A substantially pure polypeptide comprising at least one functional domain of a SARA protein.

30. A substantially pure polypeptide selected from the group consisting of (a) SASSQSPNPNNPAEYCSTIPPLQQAQASGALSSPPPTVMVPV
GVLKHPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSS; and (b) amino acids 589 to 672 of the XSARA1 sequence of Table 9.

31. A substantially pure polypeptide comprising a SARA protein FYVE
domain.

32. The polypeptide of claim 31 comprising a polypeptide selected from the group consisting of (a) amino acids 587 to 655 of the hSARA1 sequence of Table 9;
(b) amino acids 510 to 578 of the XSARA1 sequence of Table 9;
(c) the consensus amino acid sequence of Table 10; and (d) a functional fragment of a polypeptide of any of (a) to (c).

33. A substantially pure polypeptide comprising a SARA protein TGF.beta.
receptor interacting domain.

67~

34. The polypeptide of claim 33 selected from the group consisting of (a) amino acids 751 to 1323 of the hSARA1 sequence of Table 9; and (b) a functional fragment of polypeptide of (a).

35. A substantially pure antibody which selectively binds to an an antigenic determinant of a SARA protein.

36. A cell line producing the antibody of claim 35.

37. A method for identifying an allelic variant or homologue of a human SARA gene comprising choosing a nucleic acid probe or primer capable of hybridising to a human SARA gene sequence under stringent hybridisation conditions;
mixing the probe or primer with a sample of nucleic acids which may contain a nucleic acid corresponding to the homologue variant or homologue;
and detecting hybridisation of the probe or primer to the nucleic acid corresponding to the variant or homologue.

38. A method for modulating signal transduction by a TGF.beta. superfamily member through a SARA protein-dependent pathway, the method comprising modulating the binding of the SARA protein with its binding partner.

39. The method of claim 38 comprising a method selected from the group consisting of (a) modulating the binding of the SARA protein to a Smad binding partner;
(b) modulating the binding of the SARA protein FYVE domain to its binding partner; and (c) modulating the binding of the SARA protein to the TGF.beta. receptor.

40. A method for preventing or treating a disorder characterised by an abnormality in a TGF.beta. superfamily member signaling pathway which involves a SARA protein, the method comprising modulating the binding of the SARA
protein involved in the pathway with its binding partner.

41. A method for screening a candidate compound for its potential as a modulator of SARA protein-dependent signaling by a TGF.beta. superfamily member comprising (a) determining the ability of the compound to bind to a SARA
protein; and (b) determining the ability of the compound to alter the phosphorylation state of a SARA protein.

42. A non-human transgenic animal comprising a polynucleotide encoding a heterologous SARA protein or a portion thereof.

43. The transgenic animal of claim L01 wherein the polynucleotide encodes a human SARA protein or a portion thereof.

44. A non-human animal having a genome from which the SARA gene has been deleted.