CA2210731A1 - Memorisation et analyse informatiques de donnees microbiologiques - Google Patents
Memorisation et analyse informatiques de donnees microbiologiquesInfo
- Publication number
- CA2210731A1 CA2210731A1 CA002210731A CA2210731A CA2210731A1 CA 2210731 A1 CA2210731 A1 CA 2210731A1 CA 002210731 A CA002210731 A CA 002210731A CA 2210731 A CA2210731 A CA 2210731A CA 2210731 A1 CA2210731 A1 CA 2210731A1
- Authority
- CA
- Canada
- Prior art keywords
- data
- database
- storing
- tables
- attribute
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/10—Ontologies; Annotations
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biophysics (AREA)
- Databases & Information Systems (AREA)
- Bioethics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Abstract
L'invention porte sur une base de données relationnelles (1) destinée à la mémorisation d'informations d'ordre microbiologique. La base de données contient des données de séquençage de l'ADN complémentaire (290, 300) et des répertoires correspondants (510, 515), indiquant une corrélation entre des séquences de l'ADNc en cours d'identification et des séquences déjà connues. On utilise, en outre, diverses tables constituant les bases de données pour mémoriser des données historiques relatives à l'identification d'une séquence particulière d'ADNc. Ces tables comportent des données sur des sources biologiques (130), des données sur la culture et le traitement de cellules (140), des données sur la production d'ARN messager (150), des données sur la construction de l'ADNc (170) ainsi que des données sur l'élaboration de clones. Celles-ci comportent, de surcroît, des tables contenant des données en rapport avec l'inoculation (200), l'élaboration (210), l'excision (190) et un fluorimètre (220, 230, 240). Les informations corrélées dans la base de données permettent d'utiliser différentes demandes pour l'extraction de données aux fins d'analyses scientifiques et pour d'autres applications. On peut, par exemple, procéder à une analyse d'abondance en faisant appel à la base de données selon le mode de réalisation préféré afin de déterminer à quelle fréquence spécifique apparaît un produit particulier de transcription de l'ARN dans une source tissulaire donnée.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
WOPCT/US95/01160 | 1995-01-27 | ||
PCT/US1995/001160 WO1995020681A1 (fr) | 1994-01-27 | 1995-01-27 | Analyse comparative de produits de transcription geniques |
Publications (1)
Publication Number | Publication Date |
---|---|
CA2210731A1 true CA2210731A1 (fr) | 1996-08-01 |
Family
ID=22248580
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA002210731A Abandoned CA2210731A1 (fr) | 1995-01-27 | 1995-09-06 | Memorisation et analyse informatiques de donnees microbiologiques |
Country Status (6)
Country | Link |
---|---|
EP (1) | EP0805874A4 (fr) |
JP (1) | JPH11501741A (fr) |
AU (1) | AU692626B2 (fr) |
CA (1) | CA2210731A1 (fr) |
NZ (1) | NZ294720A (fr) |
WO (1) | WO1996023078A1 (fr) |
Families Citing this family (35)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6189013B1 (en) | 1996-12-12 | 2001-02-13 | Incyte Genomics, Inc. | Project-based full length biomolecular sequence database |
US5970500A (en) * | 1996-12-12 | 1999-10-19 | Incyte Pharmaceuticals, Inc. | Database and system for determining, storing and displaying gene locus information |
US6519583B1 (en) | 1997-05-15 | 2003-02-11 | Incyte Pharmaceuticals, Inc. | Graphical viewer for biomolecular sequence data |
US5966712A (en) * | 1996-12-12 | 1999-10-12 | Incyte Pharmaceuticals, Inc. | Database and system for storing, comparing and displaying genomic information |
US6553317B1 (en) | 1997-03-05 | 2003-04-22 | Incyte Pharmaceuticals, Inc. | Relational database and system for storing information relating to biomolecular sequences and reagents |
US5966711A (en) * | 1997-04-15 | 1999-10-12 | Alpha Gene, Inc. | Autonomous intelligent agents for the annotation of genomic databases |
US6611828B1 (en) | 1997-05-15 | 2003-08-26 | Incyte Genomics, Inc. | Graphical viewer for biomolecular sequence data |
US7068830B2 (en) | 1997-07-25 | 2006-06-27 | Affymetrix, Inc. | Method and system for providing a probe array chip design database |
EP1396800A3 (fr) * | 1997-07-25 | 2006-05-03 | Affymetrix, Inc. | Procédé et appareil d'obtention d'une base de données bioinformatiques |
US6420108B2 (en) | 1998-02-09 | 2002-07-16 | Affymetrix, Inc. | Computer-aided display for comparative gene expression |
DE69823206T2 (de) | 1997-07-25 | 2004-08-19 | Affymetrix, Inc. (a Delaware Corp.), Santa Clara | Verfahren zur herstellung einer bio-informatik-datenbank |
US6826296B2 (en) | 1997-07-25 | 2004-11-30 | Affymetrix, Inc. | Method and system for providing a probe array chip design database |
SE520734C2 (sv) * | 1997-11-28 | 2003-08-19 | Cybergene Ab | Handhållen anordning för analys av nukleotidsekvenser |
US6324479B1 (en) * | 1998-05-08 | 2001-11-27 | Rosetta Impharmatics, Inc. | Methods of determining protein activity levels using gene expression profiles |
US6606622B1 (en) * | 1998-07-13 | 2003-08-12 | James M. Sorace | Software method for the conversion, storage and querying of the data of cellular biological assays on the basis of experimental design |
US6185561B1 (en) | 1998-09-17 | 2001-02-06 | Affymetrix, Inc. | Method and apparatus for providing and expression data mining database |
US6489096B1 (en) | 1998-10-15 | 2002-12-03 | Princeton University | Quantitative analysis of hybridization patterns and intensities in oligonucleotide arrays |
US6507788B1 (en) * | 1999-02-25 | 2003-01-14 | Société de Conseils de Recherches et D'Applications Scientifiques (S.C.R.A.S.) | Rational selection of putative peptides from identified nucleotide, or peptide sequences, of unknown function |
GB9904585D0 (en) * | 1999-02-26 | 1999-04-21 | Gemini Research Limited | Clinical and diagnostic database |
AU5031500A (en) * | 1999-05-19 | 2000-12-05 | Whitehead Institute For Biomedical Research | A method and relational database management system for storing, comparing, and displaying results produced by analyses of gene array data |
US6611833B1 (en) * | 1999-06-23 | 2003-08-26 | Tissueinformatics, Inc. | Methods for profiling and classifying tissue using a database that includes indices representative of a tissue population |
WO2001008036A2 (fr) * | 1999-07-27 | 2001-02-01 | Cellomics, Inc. | Procede et systeme d'enregistrement dynamique et de validation de donnees de recherche |
US6941317B1 (en) | 1999-09-14 | 2005-09-06 | Eragen Biosciences, Inc. | Graphical user interface for display and analysis of biological sequence data |
AU1367201A (en) * | 1999-10-01 | 2001-05-10 | Orchid Biosciences, Inc. | Method and system for providing genotype clinical information over a computer network |
US6640211B1 (en) | 1999-10-22 | 2003-10-28 | First Genetic Trust Inc. | Genetic profiling and banking system and method |
US20020032530A1 (en) * | 2000-02-11 | 2002-03-14 | Sushma Pati | Integrated genomic services |
EP1356412A2 (fr) * | 2000-08-10 | 2003-10-29 | Glaxo Group Limited | Reseau servant a controler un profil de reponse medicale electronique globale |
AU2001296471A1 (en) * | 2000-09-28 | 2002-04-08 | Pangene Corporation | High-throughput gene cloning and phenotypic screening |
EP1328880A4 (fr) * | 2000-10-12 | 2004-12-15 | Iconix Pharm Inc | Correlation interactive de donnees de compose et de donnees genomiques |
CA2438347A1 (fr) * | 2001-02-14 | 2002-08-22 | Tibotec Bvba | Procede et appareil offrant une gestion d'information automatisee dans le cadre du criblage a haut debit |
CA2377213A1 (fr) * | 2001-03-20 | 2002-09-20 | Ortho-Clinical Diagnostics, Inc. | Methode de prestation de services de diagnostic clinique |
WO2003005236A2 (fr) * | 2001-07-05 | 2003-01-16 | Lion Bioscience Ag | Procede et dispositif pour la creation, le maintien et l'utilisation d'une base de donnees de reference |
WO2003085083A2 (fr) * | 2002-04-01 | 2003-10-16 | Phase-1 Molecular Toxicology, Inc. | Genes predicteurs de necrose du foie |
US7588892B2 (en) | 2004-07-19 | 2009-09-15 | Entelos, Inc. | Reagent sets and gene signatures for renal tubule injury |
US7467118B2 (en) | 2006-01-12 | 2008-12-16 | Entelos Inc. | Adjusted sparse linear programming method for classifying multi-dimensional biological data |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5371671A (en) * | 1990-03-13 | 1994-12-06 | The Regents Of The University Of California | DNA sequence autoradiogram digitizer and methodology implemented in the same |
US5364759B2 (en) * | 1991-01-31 | 1999-07-20 | Baylor College Medicine | Dna typing with short tandem repeat polymorphisms and identification of polymorphic short tandem repeats |
DE69228158T2 (de) * | 1991-08-27 | 1999-09-02 | Zeneca Ltd | Verfahren zur Charakterisierung genomischer DNA |
EP0582755A1 (fr) * | 1992-08-02 | 1994-02-16 | SOFT GENE, ENTWICKLGS. U. VERTRIEBSGES. F. MOLEKULARBIOLOGISCHE SOFTWARE mbH | Procédé pour stocker des données dans des bases de données |
-
1995
- 1995-09-06 CA CA002210731A patent/CA2210731A1/fr not_active Abandoned
- 1995-09-06 WO PCT/US1995/012429 patent/WO1996023078A1/fr not_active Application Discontinuation
- 1995-09-06 AU AU37590/95A patent/AU692626B2/en not_active Ceased
- 1995-09-06 EP EP95935663A patent/EP0805874A4/fr not_active Withdrawn
- 1995-09-06 NZ NZ294720A patent/NZ294720A/en unknown
- 1995-09-06 JP JP8522835A patent/JPH11501741A/ja not_active Ceased
Also Published As
Publication number | Publication date |
---|---|
EP0805874A4 (fr) | 1998-05-20 |
NZ294720A (en) | 1998-06-26 |
WO1996023078A1 (fr) | 1996-08-01 |
JPH11501741A (ja) | 1999-02-09 |
AU3759095A (en) | 1996-08-14 |
EP0805874A1 (fr) | 1997-11-12 |
AU692626B2 (en) | 1998-06-11 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
EEER | Examination request | ||
FZDE | Discontinued |