CA2210731A1 - Memorisation et analyse informatiques de donnees microbiologiques - Google Patents

Memorisation et analyse informatiques de donnees microbiologiques

Info

Publication number
CA2210731A1
CA2210731A1 CA002210731A CA2210731A CA2210731A1 CA 2210731 A1 CA2210731 A1 CA 2210731A1 CA 002210731 A CA002210731 A CA 002210731A CA 2210731 A CA2210731 A CA 2210731A CA 2210731 A1 CA2210731 A1 CA 2210731A1
Authority
CA
Canada
Prior art keywords
data
database
storing
tables
attribute
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002210731A
Other languages
English (en)
Inventor
Jeffrey J. Seilhamer
Angelo Delegeane
Randal W. Scott
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Incyte Corp
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from PCT/US1995/001160 external-priority patent/WO1995020681A1/fr
Application filed by Individual filed Critical Individual
Publication of CA2210731A1 publication Critical patent/CA2210731A1/fr
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Databases & Information Systems (AREA)
  • Bioethics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

L'invention porte sur une base de données relationnelles (1) destinée à la mémorisation d'informations d'ordre microbiologique. La base de données contient des données de séquençage de l'ADN complémentaire (290, 300) et des répertoires correspondants (510, 515), indiquant une corrélation entre des séquences de l'ADNc en cours d'identification et des séquences déjà connues. On utilise, en outre, diverses tables constituant les bases de données pour mémoriser des données historiques relatives à l'identification d'une séquence particulière d'ADNc. Ces tables comportent des données sur des sources biologiques (130), des données sur la culture et le traitement de cellules (140), des données sur la production d'ARN messager (150), des données sur la construction de l'ADNc (170) ainsi que des données sur l'élaboration de clones. Celles-ci comportent, de surcroît, des tables contenant des données en rapport avec l'inoculation (200), l'élaboration (210), l'excision (190) et un fluorimètre (220, 230, 240). Les informations corrélées dans la base de données permettent d'utiliser différentes demandes pour l'extraction de données aux fins d'analyses scientifiques et pour d'autres applications. On peut, par exemple, procéder à une analyse d'abondance en faisant appel à la base de données selon le mode de réalisation préféré afin de déterminer à quelle fréquence spécifique apparaît un produit particulier de transcription de l'ARN dans une source tissulaire donnée.
CA002210731A 1995-01-27 1995-09-06 Memorisation et analyse informatiques de donnees microbiologiques Abandoned CA2210731A1 (fr)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
WOPCT/US95/01160 1995-01-27
PCT/US1995/001160 WO1995020681A1 (fr) 1994-01-27 1995-01-27 Analyse comparative de produits de transcription geniques

Publications (1)

Publication Number Publication Date
CA2210731A1 true CA2210731A1 (fr) 1996-08-01

Family

ID=22248580

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002210731A Abandoned CA2210731A1 (fr) 1995-01-27 1995-09-06 Memorisation et analyse informatiques de donnees microbiologiques

Country Status (6)

Country Link
EP (1) EP0805874A4 (fr)
JP (1) JPH11501741A (fr)
AU (1) AU692626B2 (fr)
CA (1) CA2210731A1 (fr)
NZ (1) NZ294720A (fr)
WO (1) WO1996023078A1 (fr)

Families Citing this family (35)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6189013B1 (en) 1996-12-12 2001-02-13 Incyte Genomics, Inc. Project-based full length biomolecular sequence database
US6519583B1 (en) 1997-05-15 2003-02-11 Incyte Pharmaceuticals, Inc. Graphical viewer for biomolecular sequence data
US5970500A (en) * 1996-12-12 1999-10-19 Incyte Pharmaceuticals, Inc. Database and system for determining, storing and displaying gene locus information
US5966712A (en) * 1996-12-12 1999-10-12 Incyte Pharmaceuticals, Inc. Database and system for storing, comparing and displaying genomic information
US6553317B1 (en) 1997-03-05 2003-04-22 Incyte Pharmaceuticals, Inc. Relational database and system for storing information relating to biomolecular sequences and reagents
US5966711A (en) * 1997-04-15 1999-10-12 Alpha Gene, Inc. Autonomous intelligent agents for the annotation of genomic databases
US6611828B1 (en) 1997-05-15 2003-08-26 Incyte Genomics, Inc. Graphical viewer for biomolecular sequence data
EP1396800A3 (fr) * 1997-07-25 2006-05-03 Affymetrix, Inc. Procédé et appareil d'obtention d'une base de données bioinformatiques
US6420108B2 (en) 1998-02-09 2002-07-16 Affymetrix, Inc. Computer-aided display for comparative gene expression
US6188783B1 (en) 1997-07-25 2001-02-13 Affymetrix, Inc. Method and system for providing a probe array chip design database
US6826296B2 (en) 1997-07-25 2004-11-30 Affymetrix, Inc. Method and system for providing a probe array chip design database
US7068830B2 (en) 1997-07-25 2006-06-27 Affymetrix, Inc. Method and system for providing a probe array chip design database
SE520734C2 (sv) * 1997-11-28 2003-08-19 Cybergene Ab Handhållen anordning för analys av nukleotidsekvenser
US6324479B1 (en) * 1998-05-08 2001-11-27 Rosetta Impharmatics, Inc. Methods of determining protein activity levels using gene expression profiles
US6606622B1 (en) * 1998-07-13 2003-08-12 James M. Sorace Software method for the conversion, storage and querying of the data of cellular biological assays on the basis of experimental design
US6185561B1 (en) 1998-09-17 2001-02-06 Affymetrix, Inc. Method and apparatus for providing and expression data mining database
US6489096B1 (en) 1998-10-15 2002-12-03 Princeton University Quantitative analysis of hybridization patterns and intensities in oligonucleotide arrays
US6507788B1 (en) * 1999-02-25 2003-01-14 Société de Conseils de Recherches et D'Applications Scientifiques (S.C.R.A.S.) Rational selection of putative peptides from identified nucleotide, or peptide sequences, of unknown function
GB9904585D0 (en) * 1999-02-26 1999-04-21 Gemini Research Limited Clinical and diagnostic database
WO2000070556A2 (fr) * 1999-05-19 2000-11-23 Whitehead Institute For Biomedical Research Procede et systeme de gestion de base de donnees relationnelle, permettant de memoriser, comparer et afficher les resultats produits par des analyses de donnees d'ensembles de genes
US6611833B1 (en) * 1999-06-23 2003-08-26 Tissueinformatics, Inc. Methods for profiling and classifying tissue using a database that includes indices representative of a tissue population
WO2001008036A2 (fr) * 1999-07-27 2001-02-01 Cellomics, Inc. Procede et systeme d'enregistrement dynamique et de validation de donnees de recherche
US6941317B1 (en) 1999-09-14 2005-09-06 Eragen Biosciences, Inc. Graphical user interface for display and analysis of biological sequence data
AU1367201A (en) * 1999-10-01 2001-05-10 Orchid Biosciences, Inc. Method and system for providing genotype clinical information over a computer network
US6640211B1 (en) 1999-10-22 2003-10-28 First Genetic Trust Inc. Genetic profiling and banking system and method
CA2400189A1 (fr) * 2000-02-11 2001-08-16 Pangene Corporation Services genomiques integres
AU2001278599A1 (en) * 2000-08-10 2002-02-18 Glaxo Group Limited A global electronic medicine response profile testing network
WO2002027035A2 (fr) * 2000-09-28 2002-04-04 Pangene Corporation Clonage de genes et criblage phenotypique a haut rendement
WO2002031704A1 (fr) 2000-10-12 2002-04-18 Iconix Pharmaceuticals, Inc. Correlation interactive de donnees de compose et de donnees genomiques
US20040073558A1 (en) * 2001-02-14 2004-04-15 Schrijvers Tom Amandus Jozef Method and apparatus for providing an automated information management for high throughput screening
CA2377213A1 (fr) * 2001-03-20 2002-09-20 Ortho-Clinical Diagnostics, Inc. Methode de prestation de services de diagnostic clinique
WO2003005236A2 (fr) * 2001-07-05 2003-01-16 Lion Bioscience Ag Procede et dispositif pour la creation, le maintien et l'utilisation d'une base de donnees de reference
WO2003085083A2 (fr) * 2002-04-01 2003-10-16 Phase-1 Molecular Toxicology, Inc. Genes predicteurs de necrose du foie
US7588892B2 (en) 2004-07-19 2009-09-15 Entelos, Inc. Reagent sets and gene signatures for renal tubule injury
US7467118B2 (en) 2006-01-12 2008-12-16 Entelos Inc. Adjusted sparse linear programming method for classifying multi-dimensional biological data

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5371671A (en) * 1990-03-13 1994-12-06 The Regents Of The University Of California DNA sequence autoradiogram digitizer and methodology implemented in the same
US5364759B2 (en) * 1991-01-31 1999-07-20 Baylor College Medicine Dna typing with short tandem repeat polymorphisms and identification of polymorphic short tandem repeats
DE69228158T2 (de) * 1991-08-27 1999-09-02 Zeneca Ltd. Verfahren zur Charakterisierung genomischer DNA
EP0582755A1 (fr) * 1992-08-02 1994-02-16 SOFT GENE, ENTWICKLGS. U. VERTRIEBSGES. F. MOLEKULARBIOLOGISCHE SOFTWARE mbH Procédé pour stocker des données dans des bases de données

Also Published As

Publication number Publication date
EP0805874A1 (fr) 1997-11-12
JPH11501741A (ja) 1999-02-09
WO1996023078A1 (fr) 1996-08-01
AU3759095A (en) 1996-08-14
AU692626B2 (en) 1998-06-11
EP0805874A4 (fr) 1998-05-20
NZ294720A (en) 1998-06-26

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Legal Events

Date Code Title Description
EEER Examination request
FZDE Discontinued