AU8911101A - Combinatorial fluorescence energy transfer tags and uses thereof - Google Patents

Combinatorial fluorescence energy transfer tags and uses thereof

Info

Publication number
AU8911101A
AU8911101A AU8911101A AU8911101A AU8911101A AU 8911101 A AU8911101 A AU 8911101A AU 8911101 A AU8911101 A AU 8911101A AU 8911101 A AU8911101 A AU 8911101A AU 8911101 A AU8911101 A AU 8911101A
Authority
AU
Australia
Prior art keywords
energy transfer
fluorescence energy
combinatorial fluorescence
transfer tags
tags
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
AU8911101A
Inventor
Jingyue Ju
Zeng-Min Li
Anthony Tong
James J Russo
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Columbia University in the City of New York
Original Assignee
Columbia University in the City of New York
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/658,077 external-priority patent/US6627748B1/en
Application filed by Columbia University in the City of New York filed Critical Columbia University in the City of New York
Publication of AU8911101A publication Critical patent/AU8911101A/en
Pending legal-status Critical Current

Links

Classifications

    • BPERFORMING OPERATIONS; TRANSPORTING
    • B82NANOTECHNOLOGY
    • B82YSPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
    • B82Y20/00Nanooptics, e.g. quantum optics or photonic crystals
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B82NANOTECHNOLOGY
    • B82YSPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
    • B82Y10/00Nanotechnology for information processing, storage or transmission, e.g. quantum computing or single electron logic
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B82NANOTECHNOLOGY
    • B82YSPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
    • B82Y5/00Nanobiotechnology or nanomedicine, e.g. protein engineering or drug delivery
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • C12Q1/6818Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures

Landscapes

  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Nanotechnology (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Wood Science & Technology (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Medical Informatics (AREA)
  • Mathematical Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Optics & Photonics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
AU8911101A 2000-09-11 2001-09-11 Combinatorial fluorescence energy transfer tags and uses thereof Pending AU8911101A (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/658,077 US6627748B1 (en) 2000-09-11 2000-09-11 Combinatorial fluorescence energy transfer tags and their applications for multiplex genetic analyses
US30915601P 2001-07-31 2001-07-31
PCT/US2001/028967 WO2002022883A1 (en) 2000-09-11 2001-09-11 Combinatorial fluorescence energy transfer tags and uses thereof

Publications (1)

Publication Number Publication Date
AU8911101A true AU8911101A (en) 2002-03-26

Family

ID=26976642

Family Applications (1)

Application Number Title Priority Date Filing Date
AU8911101A Pending AU8911101A (en) 2000-09-11 2001-09-11 Combinatorial fluorescence energy transfer tags and uses thereof

Country Status (5)

Country Link
EP (1) EP1322785A4 (en)
JP (1) JP2004508838A (en)
AU (1) AU8911101A (en)
CA (1) CA2421582A1 (en)
WO (1) WO2002022883A1 (en)

Families Citing this family (76)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6627748B1 (en) 2000-09-11 2003-09-30 The Trustees Of Columbia University In The City Of New York Combinatorial fluorescence energy transfer tags and their applications for multiplex genetic analyses
US9708358B2 (en) 2000-10-06 2017-07-18 The Trustees Of Columbia University In The City Of New York Massive parallel method for decoding DNA and RNA
ATE356222T1 (en) 2000-10-06 2007-03-15 Univ Columbia MASSIVE PARALLEL METHOD FOR DECODING DNA AND RNA
US6942853B2 (en) * 2001-01-09 2005-09-13 Queen Mary And Westfield College Latent fusion protein
GB0129012D0 (en) 2001-12-04 2002-01-23 Solexa Ltd Labelled nucleotides
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
US7074597B2 (en) 2002-07-12 2006-07-11 The Trustees Of Columbia University In The City Of New York Multiplex genotyping using solid phase capturable dideoxynucleotides and mass spectrometry
US11008359B2 (en) 2002-08-23 2021-05-18 Illumina Cambridge Limited Labelled nucleotides
DK3363809T3 (en) 2002-08-23 2020-05-04 Illumina Cambridge Ltd MODIFIED NUCLEOTIDES FOR POLYNUCLEOTIDE SEQUENCE
US7414116B2 (en) 2002-08-23 2008-08-19 Illumina Cambridge Limited Labelled nucleotides
WO2005084367A2 (en) 2004-03-03 2005-09-15 The Trustees Of Columbia University In The City Of New York Photocleavable fluorescent nucleotides for dna sequencing on chip constructed by site-specific coupling chemistry
US8685711B2 (en) 2004-09-28 2014-04-01 Singulex, Inc. Methods and compositions for highly sensitive detection of molecules
US9040305B2 (en) 2004-09-28 2015-05-26 Singulex, Inc. Method of analysis for determining a specific protein in blood samples using fluorescence spectrometry
US7060955B1 (en) * 2005-01-31 2006-06-13 Chemimage Corporation Apparatus and method for defining illumination parameters of a sample
WO2007002204A2 (en) 2005-06-21 2007-01-04 The Trustees Of Columbia University In The City Of New York Pyrosequencing methods and related compostions
GB2446084B (en) 2005-10-31 2011-03-02 Univ Columbia Synthesis of four color 3-o-allyl modified photocleavable fluorescent nucleotides and related methods
WO2007053719A2 (en) 2005-10-31 2007-05-10 The Trustees Of Columbia University In The City Of New York Chemically cleavable 3'-o-allyl-dntp-allyl-fluorophore fluorescent nucleotide analogues and related methods
EP3495822B1 (en) * 2006-04-04 2023-12-20 Novilux, LLC Method for assessing acute myocardial infarction based on highly sensitive analysis of cardiac troponin
EP1860197A1 (en) * 2006-05-24 2007-11-28 Humboldt-Universität zu Berlin Method for detecting target nucleic acids using template catalyzed transfer reactions
US8889348B2 (en) 2006-06-07 2014-11-18 The Trustees Of Columbia University In The City Of New York DNA sequencing by nanopore using modified nucleotides
EP2071927A2 (en) 2006-09-28 2009-06-24 Illumina, Inc. Compositions and methods for nucleotide sequencing
GB2457402B (en) 2006-12-01 2011-10-19 Univ Columbia Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators
GB0700640D0 (en) * 2007-01-12 2007-02-21 Iti Scotland Ltd Detecting analytes
US20110014611A1 (en) 2007-10-19 2011-01-20 Jingyue Ju Design and synthesis of cleavable fluorescent nucleotides as reversible terminators for dna sequences by synthesis
EP3431615A3 (en) 2007-10-19 2019-02-20 The Trustees of Columbia University in the City of New York Dna sequencing with non-fluorescent nucleotide reversible terminators cleavable label modified nucleotide terminators
EP2232271B1 (en) 2007-12-19 2019-09-11 Singulex, Inc. Scanning analyzer for single molecule detection and methods of use
US8324914B2 (en) 2010-02-08 2012-12-04 Genia Technologies, Inc. Systems and methods for characterizing a molecule
US9678055B2 (en) 2010-02-08 2017-06-13 Genia Technologies, Inc. Methods for forming a nanopore in a lipid bilayer
US9605307B2 (en) 2010-02-08 2017-03-28 Genia Technologies, Inc. Systems and methods for forming a nanopore in a lipid bilayer
ES2641871T3 (en) 2010-12-17 2017-11-14 The Trustees Of Columbia University In The City Of New York DNA sequencing by synthesis using modified nucleotides and nanopore detection
WO2012088339A2 (en) 2010-12-22 2012-06-28 Genia Technologies, Inc. Nanopore-based single dna molecule characterization using speed bumps
US9581563B2 (en) 2011-01-24 2017-02-28 Genia Technologies, Inc. System for communicating information from an array of sensors
US9110478B2 (en) 2011-01-27 2015-08-18 Genia Technologies, Inc. Temperature regulation of measurement arrays
US9624539B2 (en) 2011-05-23 2017-04-18 The Trustees Of Columbia University In The City Of New York DNA sequencing by synthesis using Raman and infrared spectroscopy detection
US8986629B2 (en) 2012-02-27 2015-03-24 Genia Technologies, Inc. Sensor circuit for controlling, detecting, and measuring a molecular complex
CN104379761B (en) 2012-04-09 2017-03-01 纽约哥伦比亚大学理事会 The preparation method of nano-pore and its purposes
US9494554B2 (en) 2012-06-15 2016-11-15 Genia Technologies, Inc. Chip set-up and high-accuracy nucleic acid sequencing
ES2779699T3 (en) 2012-06-20 2020-08-18 Univ Columbia Nucleic Acid Sequencing by Nanopore Detection of Tag Molecules
US9605309B2 (en) 2012-11-09 2017-03-28 Genia Technologies, Inc. Nucleic acid sequencing using tags
US9759711B2 (en) 2013-02-05 2017-09-12 Genia Technologies, Inc. Nanopore arrays
CN105074007A (en) * 2013-03-12 2015-11-18 考希尔股份有限公司 Systems and methods for prenatal genetic analysis
EP2970356B1 (en) 2013-03-15 2018-05-30 Illumina Cambridge Limited Modified nucleosides or nucleotides
WO2014144883A1 (en) 2013-03-15 2014-09-18 The Trustees Of Columbia University In The City Of New York Raman cluster tagged molecules for biological imaging
CN105102627B (en) 2013-03-15 2018-10-19 纽约哥伦比亚大学理事会 Method for detecting a variety of predetermined compounds in sample
CN105377994B (en) 2013-08-22 2018-03-02 索尼公司 Water-soluble fluorescent dye or colored dyes and its application method
US9551697B2 (en) 2013-10-17 2017-01-24 Genia Technologies, Inc. Non-faradaic, capacitively coupled measurement in a nanopore cell array
US9322062B2 (en) 2013-10-23 2016-04-26 Genia Technologies, Inc. Process for biosensor well formation
CN105723222B (en) 2013-10-23 2019-01-22 吉尼亚科技公司 It is sensed using the high-velocity molecular of nano-pore
MA39774A (en) 2014-03-24 2021-05-12 Roche Sequencing Solutions Inc CHEMICAL PROCESSES TO PRODUCE LABEL NUCLEOTIDES
KR102646956B1 (en) 2015-02-26 2024-03-14 소니그룹주식회사 Phenylethynylnaphthalene dye and method of using the same
WO2016138461A1 (en) 2015-02-26 2016-09-01 Sony Corporation Water soluble fluorescent or colored dyes comprising conjugating groups
WO2016144973A1 (en) 2015-03-09 2016-09-15 The Trustees Of Columbia University In The City Of New York Pore-forming protein conjugate compositions and methods
JP6849599B2 (en) 2015-05-11 2021-03-24 ソニー株式会社 Super bright dimer or polymer dye
WO2017058953A1 (en) 2015-09-28 2017-04-06 The Trustees Of Columbia University In The City Of New York Design and synthesis of novel disulfide linker based nucleotides as reversible terminators for dna sequencing by synthesis
BR112018070164B1 (en) 2016-04-01 2022-09-27 Sony Corporation Of America ULTRABRIGHT DIMERIC OR POLYMERIC COLORINGS
JP7145079B2 (en) 2016-04-01 2022-09-30 ソニーグループ株式会社 Ultrabright dimer or polymer dyes with rigid spacing groups
KR20230066645A (en) 2016-04-06 2023-05-16 소니그룹주식회사 Ultra bright dimeric or polymeric dyes with spacing linker groups
WO2017197014A2 (en) 2016-05-10 2017-11-16 Sony Corporation Compositions comprising a polymeric dye and a cyclodextrin and uses thereof
JP7527537B2 (en) 2016-05-10 2024-08-05 ソニーグループ株式会社 Super-bright polymer dyes with peptide backbones
AU2017264861B2 (en) 2016-05-11 2021-09-23 Sony Group Corporation Ultra bright dimeric or polymeric dyes
CN116656795A (en) 2016-05-23 2023-08-29 纽约哥伦比亚大学董事会 Nucleotide derivatives and methods of use thereof
WO2017214165A1 (en) 2016-06-06 2017-12-14 Sony Corporation Ionic polymers comprising fluorescent or colored reporter groups
WO2018022925A1 (en) 2016-07-29 2018-02-01 Sony Corporation Ultra bright dimeric or polymeric dyes and methods for preparation of the same
US11591647B2 (en) 2017-03-06 2023-02-28 Singular Genomics Systems, Inc. Nucleic acid sequencing-by-synthesis (SBS) methods that combine SBS cycle steps
US12018325B2 (en) 2017-03-28 2024-06-25 The Trustees Of Columbia University In The City Of New York 3′-O-modified nucleotide analogues with different cleavable linkers for attaching fluorescent labels to the base for DNA sequencing by synthesis
EP3438649B1 (en) * 2017-07-31 2020-03-11 Vestel Elektronik Sanayi ve Ticaret A.S. Identification tag and method of identifying an object
JP7551056B2 (en) 2017-10-05 2024-09-17 ソニーグループ株式会社 Programmable polymer drugs
EP3710062A1 (en) 2017-11-16 2020-09-23 Sony Corporation Programmable polymeric drugs
JP2021510696A (en) 2018-01-12 2021-04-30 ソニー株式会社 Polymers with rigid spacing groups containing biologically active compounds
EP3769085B1 (en) 2018-03-19 2022-08-24 Sony Group Corporation Use of divalent metals for enhancement of fluorescent signals
KR20200133374A (en) 2018-03-21 2020-11-27 소니 주식회사 Polymeric tandem dyes with linker groups
EP3814366A1 (en) 2018-06-27 2021-05-05 Sony Corporation Polymeric dyes with linker groups comprising deoxyribose
US20230028359A1 (en) 2018-10-25 2023-01-26 Singular Genomics Systems, Inc. Nucleotide analogues
EP3908286A4 (en) 2019-01-08 2022-10-12 Singular Genomics Systems, Inc. Nucleotide cleavable linkers and uses thereof
CN113383043A (en) 2019-09-26 2021-09-10 索尼集团公司 Polymer tandem dyes with linker groups
EP4397672A1 (en) 2021-08-31 2024-07-10 FUJIFILM Corporation Compound and labeled biomaterial using same

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4824775A (en) * 1985-01-03 1989-04-25 Molecular Diagnostics, Inc. Cells labeled with multiple Fluorophores bound to a nucleic acid carrier
US5654419A (en) * 1994-02-01 1997-08-05 The Regents Of The University Of California Fluorescent labels and their use in separations
IL124967A (en) * 1995-12-18 2000-07-26 Univ Washington Method for nucleic acid analysis using fluorescence resonance energy transfer
US5853992A (en) * 1996-10-04 1998-12-29 The Regents Of The University Of California Cyanine dyes with high-absorbance cross section as donor chromophores in energy transfer labels
US5804386A (en) * 1997-01-15 1998-09-08 Incyte Pharmaceuticals, Inc. Sets of labeled energy transfer fluorescent primers and their use in multi component analysis
US5834203A (en) * 1997-08-25 1998-11-10 Applied Spectral Imaging Method for classification of pixels into groups according to their spectra using a plurality of wide band filters and hardwire therefore
WO2001027625A1 (en) * 1999-10-08 2001-04-19 Leif Robert C Conjugated polymer tag complexes

Also Published As

Publication number Publication date
EP1322785A1 (en) 2003-07-02
WO2002022883A1 (en) 2002-03-21
JP2004508838A (en) 2004-03-25
EP1322785A4 (en) 2005-11-09
CA2421582A1 (en) 2002-03-21

Similar Documents

Publication Publication Date Title
AU8911101A (en) Combinatorial fluorescence energy transfer tags and uses thereof
EP1344205A4 (en) Tag marking
AU1415902A (en) Tag tracking
DE60000782D1 (en) INTELLIGENT MEDIA READER AND LABEL PRINTER
DE60130320D1 (en) CONTAINER TRANSFER AND PROCESSING SYSTEM
EP1441911A4 (en) Microcapsules having improved printing and efficiency
DE60044923D1 (en) Biochip reader
GB0124265D0 (en) Bag tag
AU8064501A (en) Non-aqueous heat transfer fluid and use thereof
GB0002814D0 (en) Nucleic acids and their uses
DE60141871D1 (en) Oligonucleotide labels and their use
EP1146338A4 (en) Biochip reader and labeling reagent
IL153573A0 (en) Clk-2, cek-7 and coq-4 genes, and uses thereof
AU2002357294A8 (en) Sequential data transfer detection
AU2003272704A8 (en) Energy transfer dyes, terminators and use thereof
AU2001289111A1 (en) Combinatorial fluorescence energy transfer tags and uses thereof
EP1453265A4 (en) Information transfer methods
GB2359962B (en) Magnetic tags
GB0029041D0 (en) Utility wallet
GB0015970D0 (en) Transfer
AU2003226829A1 (en) Nucleotide detection by fluorescence resonance energy transfer and methods thereof
AU2001232551A1 (en) A heat exchanger and use thereof
GB0005624D0 (en) Information transfer means
PL344701A1 (en) Versatile environmental energy exchanger
GB0006999D0 (en) Information tags