AU714492B2 - Stem cell proliferation factor - Google Patents

Description

1

AUSTRALIA

Patents Act 1990 COMPLETE SPECIFICATION FOR A STANDARD PATENT Name of Applicant: UNIVERSITY OF FLORIDA FOUNDATION INCORPORATED

RESEARCH

a Actual Inventors: Address for Service: Invention Title: Michael Lawman Charles Bagwell Patricia Lawman CULLEN CO., Patent Trade Mark Attorneys, 240 Queen Street, Brisbane, Qld. 4000, Australia.

STEM CELL PROLIFERATION FACTOR The following statement is a full description of this invention, including the best method of performing it known to us.

STEM CELL PROLIFERATION FACTOR 1. INTRODUCTION This application is a continuation-in-part application of U.S. Application Serial Number 07/863.889 filed 06 April 1992. The present invention is directed to an autocrine growth factor isolated from a human germ cell tumor line. In particular, it relates to the production, purification and uses of stem cell proliferation factor (SCPF). The protein of the invention exists in two forms, a soluble form and a membrane bound form which is detectable on the surface of a small percentage of human bone marrow cells and stimulates the proliferation of these cells.

Therefore, SCPF may have a wide range of applications including but not limited to augmenting the growth of hematopoietic stem cells. Further, removal of the protein by an antibody may be useful in controlling tumor cell growth.

2. BACKGROUND OF THE INVENTION Growth factors have been described that exert 20 their stimulatory effects on the cells that produce them in an autocrine fashion. The same factors may display similar activities on other target cells.

However, it has not been described in the literature that tumor cells obtained from the nervous system produce factors that regulate the growth of cells of the hematopoietic system.

2.1. GERM CELL TUMORS Germ cell tumors of the central nervous system are rare, comprising less than 3% of pediatric solid tumors. These tumors arise most commonly in the pineal gland and hypothalamus, though they have been described in the thalamus and basal ganglia.

Histologically, these tumors are most commonly found to be germinomas. Less common sub-types include choriocarcinoma, embryonal germ cell tumor, and mixed germ cell tumor. These types of tumor in general have a worse prognosis.

The treatment of these tumors is multimodal, with surgery and radiation theranyv enr, wi -th intensive platinum-based chemotherapy protocols and autologous bone marrow transplantation playing a significant role for patients with non-germinomatous germ cell tumors, metastatic disease, or recurrent disease. Metastatic spread via ventricular shunts has been reported and may occur anywhere along the tract of the shunt. Metastatic deposits in the neck and the lung have been reported, but most commonly these deposits are associated with ventricular peritoneal shunts and large peritoneal implants. Cell lines cultured from intracranial germ cell tumors are uncommonly reported, though several cell lines have been derived from germ cell tumors of extra-neural 1: 5 origin. Continuous in vitro cell lines have been derived from rat carcinomas. These cell lines have proven very valuable in the study of differentiation of primitive pluripotent cells.

2.2. HEMATOPOIETIC CELLS AND GROWTH FACTORS In human medicine, the ability to initiate and regulate hematopoiesis is of great importance (McCune et al., 1988, Science 241:1632). A variety of diseases and immune disorders, including malignancies,appear to be related to disruptions within the lympho-hematopoietic system. Many of these disorders could be alleviated and/or cured by repopulating the hematopoietic system with progenitor cells, which when triggered to differentiate would overcome the patient's deficiency. In humans, a current replacement therapy is bone marrow transplantation.

Apart from the use of bone marrow transplantation in the treatment of leukemia, it is now frequently being used in other neoplasia (Epstein and Slease, 1985, Surg. Ann. 17:125). This type of therapy, however, is 3 both painful (for donor and recipient) because of involvement of invasive procedures and can offer severe complications to the recipient, particularly when the graft is allogeneic and Graft Versus Host ie (-VED) resus.ThUreforeL k VL; restricts the use of bone marrow transplantation to patients with otherwise fatal diseases. A potentially more exciting alternative therapy for hematopoietic is the treatment of patients with any one or combination of colony stimulating factors (Dexter, 1987, J. Cell Sci. 88:1).

The process of blood cell formation, by which a small number of self-renewing stem cells give rise to lineage specific progenitor cells that subsequently undergo proliferation and differentiation to produce the mature circulating blood cells is under the control of specific hormones. These hormones are collectively known as colony stimulating factors (CSFs) (Metcalf, 1985, Science 229:16; Dexter, 1987, 5(C 15 J. Cell Sci. 88:1; Golde and Gasson, 1988, Scientific American, July:62; Tabbara and Robinson, 1991, Anti- Cancer Res. 11:81; Ogawa, 1989, Environ. Health Presp.

80:199; Dexter, 1989, Br. Med. Bull. 45:337). With the advent of recombinant DNA technology, a number of 20 these CSFs have now been cloned and expressed (Souza et al., 1986, Science 232:61; Gough et al., 1984, Nature 309:763.; Yokota et al., 1984, Proc. Natl. Acad.- .Sci. U.S.A. 81:1070; Kawasaki et al., 1985, Science 230:291). These recombinant CSFs are now available and extensive studies into their therapeutic potential have begun. Their potential uses in medicine are far-reaching and include such areas as blood transfusions, bone marrow transplantation, correcting 3 immunosuppressive disorders, cancer therapy, wound healing, and activation of the immune response.

(Golde and Gasson, 1988, Scientific American, July:62). Apart from inducing proliferation and differentiation of hematopoietic progenitor cells, CSFs have also been shown to activate a number of functions of mature blood cells (Stanley et al., 1976, J. Exp. Med. 143:631; Schrader et al., 1981, Proc.

Natl. Acad. Sci. U.S.A. 78:323; Moore et al., 1980, J.

Immunol. 125:n1302; iurland c al 197 9 P-oc .4atl.

Acad. Sci. U.S.A. 76:2326; Handman and Burgess, 1979, J. Immunol. 122:1134; Vadas et al., 1983, Blood 61:1232; Vadas et al., 1983, J. Immunol. 130:795), including influencing the migration of mature hematopoietic cells (Weibart et al., 1986, J. Immunol.

137:3584).

3. SUMMARY OF THE INVENTION The present invention relates to stem cell proliferation factor (SCPF), its use in stimulating growth of various stem cell populations including hematopoietic stem cells, and a method for identifying other growth factors or cytokines produced by germ cell tumors. SCPF is a novel autocrine growth factor which is expressed in a secreted form of 32,000 daltons and membrane bound form of 37,000 daltons molecular weight. SCPF stimulates proliferation and growth of a germ cell tumor line that produces it as well as CD34 human bone marrow stem cells.

The invention is based, in part, on the Applicants' discovery that germ cell tumor line 751 releases an autocrine growth factor into the culture medium. Polyclonal rabbit antibody (SAM.1) generated against the purified 32 kDa protein recognizes both a 32 kDa secreted product and a 37 kDa cell bound protein. This antibody is also capable of identifying a cell population in human bone marrow, reacting with less than 2.6% of normal (adherent-depleted) bone marrow cells. This SCPF bone marrow cell population 3 co-expresses the stem cell marker CD34. As shown in the working examples described herein, SCPF is distinct from any of the known bone marrow colony stimulating factors (CSF) since antibodies specific for GM-CSF, G-CSF, M-CSF and IL-3 do not inhibit the 3 biologic activities of SCPF. Further, SCPF is also distinct from the ligand for the c-kit oncogene product (SCF) as anti-SCPF antibody does not neutralize SCF fun ct ion.

According to a first embodiment of the invention, there is provided an isolated stem cell proliferation factor produced by cell line 751-NA-15 having ATCC accession No. CRL 10992 comprising a polypeptide having the following properties: stimulation of proliferation of human bone marrow stem cells; stimulation of proliferation of human bone marrow stem cells in the presence of antibodies that bind and neutralize IL-3, GM-CSF, G-CSF or M-CSF; and being a polypeptide selected from: i) a soluble polypeptide having a molecular weight of 31 kilodaltons as determined by SDSpolyacrylamide gel electrophoresis; or ii) a polypeptide containing a trans-membrane domain and having a molecular weight of 37 kilodaltons as determined by SDS-polacrylamide gel electrophoresis.

According to a second embodiment of the invention, there is provided an antibody produced in response to challenge by stem cell proliferation factor of the first embodiment and which S: immunospecifically binds to said stem cell proliferation factor.

According to a third embodiment of the invention, there is provided a method for producing the stem cell proliferation factor of the first embodiment, said method comprising: culturing a cell that contains a nucleotide sequence encoding the stem cell proliferation factor of the ::30 first embodiment under the operational control of a regulatory nucleotide sequence that directs gene expression so that biologically active stem cell proliferation factor is expressed by the cultured cell; and 35 recovering biologically active stem cell proliferation factor from the culture.

According to a fourth embodiment of the invention, there is provided a method for stimulating the proliferation of human bone marrow stem cells comprising contacting the bone marrow cells with the stem cell proliferation factor of the first Pmhn9 impnt According to a fifth embodiment of the invention, there is provided a method for inhibiting the proliferation of tumor cells that are stimulated by the stem cell proliferation factor of the first embodiment comprising contacting the tumor cells with an antibody or an antibody fragment that binds to and neutralizes the stem cell proliferation factor.

According to a sixth embodiment of the invention, there is provided a method for detecting a disorder associated with stem cell proliferation factor in a subject comprising contacting specimen of the subject suspected of having the stem cell proliferation factor-associated disorder with an antibody of the second embodiment and detecting binding of the antibody According to a seventh embodiment of the invention, there is provided a germ cell tumor line having ATCC accession number CRL 10092.

The invention is described by way of examples in which a germ cell tumor is isolated from a patient, SCPF is identified as an autocrine growth factor produced by the tumor cells, and the biochemical and biological properties of the factor are S characterized. A wide variety of uses for this novel protein are encompassed by the invention described herein.

4. BRIEF DESCRIPTION OF THE DRAWINGS FIG. 1. Phenotype characterization by Flow Cytometric Analysis. The 751-germ cell line was stained with antibodies directed against antigen markers specific for cytoskeletal structures for non-neuro-ectodermal 30 germ cells (anti-PAP, anti-HCG), and germ cells or neural origin (anti-cytokeratin, vimentin, NSE, GFAP, and NFP). Anti-HLA class I was used as a control.

*The pattern of staining, shown in the box, is indicative of this cell line being primitive 35 neuroectodermal cell capable of differentiation into cells of neuronal or glial lineages.

FIG. 2. Autoradiographs and Ambis scan of an SDS-PAGE gel of supernatants from the 751 germ cell tumor following 35

S]-

methionine metabolic labeling. The supernatants were collected at 24 hours after 35 S:-pulse -751- GC=original germ cell upon in vitro growth. 751-T2=nu/'nu itmurine passayyed cells ioliated from the primary subcutaneous tumor. 751-Met nu/nu murine passaged cells isolated from a liver metastasis. The Ambis scan was directed against the 32kDa protein and shows the quantitative difference in secretion, of the 32kDa protein, from the murine tumor, metastasizing tumor and original germ cell line passaged only in tissue culture.

&oo 6 0 ot a.

*go FIG. 3. Western blot analysis of the 37kDa gel purified protein (SCPF) using SAM 1 antibody. Coomassie blue stain of an SDS-PAGE gel showing the 37kDa protein. (B) Western blot of the gel in panel 3A.

FIG. 4. Antibody inhibition of tumor growth. The SAM.1 antibody (anti-SCPF) was used to inhibit tumor cell colony formation in soft agar (methyl cellulose). The bar graph shows the inhibition of colonies (absolute numbers) as a function of antibody concentration. NRS is normal rabbit serum at a dilution of 1:20. The lower panel shows the actual colonies which are stained with methylene blue.

FIG. 5. Antibody inhibition of tumor growth. This 15 figure shows the inhibition of tumor growth by the SAM.1 antibody as a function of tritiated thymidine incorporation to measure DNA replication. Cells were placed in 96- 20 well microplates at 10,000 cells/well and antiserum at varying dilutions was added to each well. Each dilution was repeated in triplicate. 48 hours after culture the *i cells were labeled with 3 H-thymidine (1U/well) and recultured for 12 hours after which time the cells were harvested and the incorporation of the radioisotope measured using a scintillation counter. The data shows that the proliferation of the germ cell 751 and a very primitive bone marrow cell line (BO-BM.1) was inhibited by the antibody, however, A251 neuroblastoma cell line was not.

FIG. 6, Flow cytometric analysis of human bone marrow blast cells isolated from clonogenic activity: CD34 expression.

activity: CD34 expression.

C

C

C C.

C.

FIG. 7. Replication of the CD34 cells in long term in vitro culture: the CD34- cells were induced using purified SCPF prior to in vitro culture.

FIG. 8. Proliferation of normal human bone marrow in response to SCPF: Tritiated thymidine incorporation assay.

FIG. 9. Flow cytometric analysis of adherent depleted human bone marrow (9A) and cord blood (9B) stained with SAM.1 (anti-SCPF) antibody. The black line represents the FITC goat-anti-rabbit control, the blue line represents the goat anti-mouse FITC control.

The HLA class I (green line) was used as a positive control.

FIG. 10. Analysis of the dual staining (SAM.1 and CD34) population of human cord blood.

FIG. 11. Single and two color flow cytometric analysis of SAM.1 binding to CD34 cell isolated by immunomagnetic beads. (la) goat-anti-rabbit FITC control, (Ib) CD34 cells stained with SAM.1 antibody, (Ic) CD34' cells stained with HLA class I mouse monoclonal antibody, (2a) goat-anti-mouse PE control, (2b) CD34' cells stained with anti- CD34 antibody, (2c) goat-anti-mouse FITC control, (3b) CD34 cells dual stained with SAM.1 (FITC) and anti-CD34 monoclonal antibody (PE).

FIG. 12. Comparison, by flow cytometric analysis, of the binding efficiency of SAM.1 and anti- CD34 alone and in combination.

FIG. 13. Long term in vitro growth of CD34 cells using SCPF.

FIG. 14. Flow cytometric analysis (3 color) of the CD34 cells expanded in long-term culture using SCPF: Gate C.

I

FIG. 15.

FIG. 16.

FIG. 17.

9 9* *9 9* 9 9 9 9 9* 99 9* *9e* Flow cytometric analysis (3 color) of the CD34' cells expandedpri in lnnr-terTm culture using SCPF: Gate B.

Bone marrow clonogenic activity of SCPF.

BFU activity of a mixture of CSF's (100u/ml GM-CSF, 100u/ml IL-3, lu/ml EPO) alone BFU activity of SCPF at varying concentrations. BFU activity of CSF mixed with 100ng/ml of SCPF. The data indicates that SCPF is capable of inducing BFU activity alone and also synergises with the CSF mixture Bone marrow clonogenic activity of SCPF.

CFU-GM activity of a mixture of (100u/ml GM-CSF, 100u/ml IL-3, lu/ml EPO) alone, (B) CFU-GM activity of SCPF at varying concentrations, CFU-GM activity of CSF mixed with 100ng/ml of SCPF. The data indicates that SCPF is capable of inducing CFU-GM activity alone and also synergises with the CSF mixture Bone marrow clonogenic activity of SCPF.

CFU-GEMM activity of a mixture of (100u/ml GM-CSF, 100u/ml IL-3, lu/ml EPO) alone, CFU-GEMM activity of SCPF at varying concentrations, CFU-GEMM activity of CSF mixed with 100ng/ml of SCPF.

The data indicates that SCPF is not capable of inducing CFU-GEMM activity alone but will synergise with the CSF mixture DETAILED DESCRIPTION OF THE IVENTION FIG. 18.

9*99 9 9 99 9 9 a.

*9 The present invention relates to stem cell proliferation factor (SCPF), to methods for the production of SCPF by conventional or recombinant DNA technology, to methods of using SCPF, and to methods of identifying and isolating other members of the SCPF family from similarly derived germ cell tumor lines.

SCPF, a novel autocrine growth factor, is expressed by a al-rm r-cll ti;mr 7in 7-1 1i membrane bound and secreted forms. The membrane form of SCPF is also expressed on the cell surface of a small fraction of CD34' human bone marrow cells.

SFurther, SCPF stimulates proliferation of CD34* bone marrow stem cells, indicating that it may be useful in conditions which require acceleration of hematopoietic cell growth, in the culture of stems cells for use in bone marrow transplantations, or treatment in vivo for regulating hematopoiesis. The removal of SCPF by an antibody in the 751 tumor cell cultures leads to a reduction of tumor cell colony formation, suggesting that SCPF is involved in supporting tumor cell proliferation and thus, inhibition of SCPF 15 activity may be useful in the treatment of certain tumors. This is further supported by in vivo experiments in which the co-injection of anti-SCPF antibody and 751 cells results in reduced tumorigenicity of the cell line. In addition, the 2"0* membrane form of SCPF may also be useful as a cell 20 surface marker for the identification and isolation of a small population of pluripotent bone marrow stem S* cells by use of an anti-SCPF antibody.

to** SCPF, or fragments and derivatives thereof, may Shave widespread potential applications in the 25 regulation of hematopoiesis as well as in the treatment of certain germ cell cancers.

Additional germ cell tumor lines may be generated in culture in the practice of invention. Such tumor cells may be a source of cytokines that possess growth potentiating activities on cells of the hematopoietic system in particular, and on germ/stem cells of a variety of tissue types in general.

The invention is discussed in more detail in the subsections below, solely for purposes of description and not by way of limitation. For clarity of discussion, the invention is described in terms of a particular SCPF and germ cell tumor line. However, the principles may be analooniius aplied to autocrine factors derived from other germ cell tumor lines.

5.1. NEURO-ECTODERMAL GERM CELL LINES Germ cell tumors of the central nervous system are believed to be products of primitive cells lodged in the neural crest during their migration to other tissue sites in embryogenesis. Such tumor cells may produce a variety of cytokines that act on tissues outside of the nervous system (Bhandar, 1988, Med.

Hypoth, 27:291). Therefore, cell lines generated from germ cell tumors may be a source of early acting growth factors that influence proliferation of a variety of cell types, including cells of the hematopoietic system.

The present invention illustrates one such longterm cell line 751 generated from a surgically removed germ cell tumor which was obtained from a patient diagnosed to have multiple subcutaneous masses along 2 the ventriculoperitoneal shunt. The cultured cells are non-adherent and display an extremely short doubling time of 7-8 hours in vitro. This rapid growth kinetic was also confirmed in vivo upon '....transfer of the cultured cells into BNX mice which 25 developed visible subcutaneous tumors from an inoculum of 103 cells in 7 days as opposed to 2-3 months for the majority of xenogeneic tumors in murine models.

Flow cytometry analysis using antibodies directed to specific cell determinants indicated that 751 cells represent a primitive brain neuro-ectodermal cell line which can further differentiate into neuronal or glial cell lineages upon appropriate stimulations.

Therefore, it is a primitive pluripotent cell line possessing both growth and differentiation potentials.

3 The 751 cells do not express any of the known leukocyte surface markers including CD34. In addition, mRNA's for the oncogenes c-myc and c-fms have been detected using molecular probes specific for a panel of oncogene sequences. As c-fms has been shown to be a receptor for macrophage-colony stimulating factor, 751 cells may be related in some manner to progenitor cells of the bone marrow.

5 5.2. STEM CELL PROLIFERATION FACTOR The stem cell proliferation factor produced by the 751 cell line as described in the examples herein, exists in two forms, a secreted form having a molecular weight of about 32 kDa, and a membrane bound form of 37 kDa in molecular weight. Multiple isoforms of the SCPF are identified having P.I.'s ranging from about 7.0 to The 32 kDa SCPF was used to generate a polyclonal antiserum in rabbits. A specific polyclonal antibody designated SAM.1 was used to facilitate further 15 biochemical characterization of the major secreted protein by 751 cells. The antibody was first shown to be specific for the SCPF protein, as it reacted with a protein species of 37 kDa in 751 whole cell lysates in Western immunoblotting experiments. This finding demonstrates that the protein of interest can exist in a secreted form of 32 kDa and a membrane form of 37 kDa molecular weight which may include a transmembrana component for anchoring. Thus, the same protein may 25 function as both a soluble molecule and a cell surface 25 protein between interacting cells.

In order to delineate the biologic activities of this protein (referred to hereafter as stem cell proliferation factor, SCPF), colony inhibition assays were performed in which 751 cell colony formation was assessed in the presence of various concentrations of the rabbit antiserum. The results clearly demonstrate that the antibody inhibited the tumor cell colony formation, indicating that the secreted protein is an 3 autocrine growth factor which promotes the growth of 751 cells. Furthermore, the proliferation inhibitory effect of the antibody is specific for germ or stem cell lines in that growth of a neuroblastoma cell line is not inhibited.

SCPF was purified and tested for its ability to stimulate the proliferation of human bone marrow cells. SCPF induced the growth of blast cells in assays, which were subsequently shown to express the CD34 marker and HLA Class I antigen by flow cytometric analysis. When the same cells were grown in long term Gordon cultures in the absence of SCPF and tested for replating efficiency in the presence of recombinant GM-CSF, the cells responded to give rise of colonies of granulocytes, monocytes and mixed phenotype. Therefore, SCPF is capable of inducing replication of a population of CD34* bone :marrow cells which retain ability to differentiate in 5 response to subsequent stimulation with colony stimulating factors.

When anti-SCPF antibody was reacted with human bone marrow cells, a small but detectable fraction of cells were shown to be positively stained. The same cells also express the CD34 protein which has been reported to be a marker expressed by hematopoietic stem cells. However, the finding that the SCPFproducing 751 germ cell tumor is negative for CD34 expression and that anti-SCPF and anti-CD34 antibodies 5 do not competitively inhibit each other in binding to purified CD34 cells, demonstrate that the SAM.1 antibody is not directed to the CD34 marker but to a membrane form of SCPF. SAM.1 antibody does not crossreact with any proteins of different non-human animal species, as it failed to react with cells obtained from murine, bovine and ovine bone marrow.

In order to further characterize the biological properties of SCPF, long-term cultures of CD34' cells were initiated in the presence of exogenous purified 3 SCPF. Unlike the cultures that expanded rapidly in response to recombinant IL-3 or IL-6, cultures receiving SCPF underwent an initial phase of cell death leading to a residual population of CD34' cells hich cul 2.therprAife11rate in L>UonS to 5CPF. The SCPF-treated cells appear more uniform in morphology, in contradistinction to the cultures grown in IL-3 or IL-6. However, the SCPF-treated cultures generated cell populations based on cell surface marker expression. While both populations expressed CD34, one population was negative for CD38 and HLA-DR expression and the other expressed low levels of both markers. Thus, taken collectively, SCPF is an autocrine growth factor that induces the proliferation of CD34 bone marrow cells without causing differentiation while the cells retain their capacity to respond to other differentiation signals. The factor does not induce malignant transformation of 15 cultured cells because the removal of SCPF led to a rapid decline in CD34 cell viability.

Additionally, SCPF is capable of augmenting the stimulatory effects on bone marrow cells when used in combination with other colony stimulating factors.

However, SCPF is not similar to any of the known hematopoietic growth factors because antibodies specific for human GM-CSF, G-CSF, M-CSF and IL-3 do not neutralize the biologic activities of SCPF.

Furthermore, anti-SCPF antibody does not inhibit the :25 function of a recently identified stem cell factor (SCF) which has been shown to be the ligand for a receptor encoded by the c-kit oncogene (Yokota et al., 1984, Proc. Natl. Acad. Sci. U.S.A. 81:1070; Williams et al., 1990, Cell 63:167; Zsebo et al., 1990, Cell 63:195).

5.3. ISOLATION OF THE SCPF CODING SEOUENCE Messenger RNA (mRNA) for the preparation of cDNA may be obtained from cell sources that produce SCPF, whereas genomic sequences for SCPF may be obtained from any cell source. For example, 751-NA, 751-LIV or 751-LN cells may be utilized either as the source of the coding sequences for SCPF and/or to prepare cDNA or genomic libraries. Genetically-engineered microorganisms or cell lines conta~.~,-g the A An.4&V U11: 0%_r coding sequence may be used as a convenient source of DNA for this purpose.

Either cDNA or genomic libraries may be prepared from the DNA fragments generated using techniques well known in the art. The fragments which encode SCPF may be identified by screening such libraries with a nucleotide probe homologous to a portion of the SCPF sequence which is based on amino acid sequence information obtained from the purified protein.

Alternatively, an antibody probe may be used to screen a library generated by expression cloning methods such as Xgtll (Young and Davis, Proc. Natl. Acad. Sci.

U.S.A. 80:1194-1198). Although portions of the coding 15 sequence may be utilized for cloning and expression, full length clones, ie, those containing the entire coding region for SCPF, may be preferable for expression. To these ends, techniques well known to those skilled in the art for the isolation of DNA, generation of appropriate restriction fragments, construction of clones and libraries, and screening recombinants may be used. See, for example, the techniques described in Maniatis et al., 1989, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory, N.Y.

Regardless of the method chosen to identify and clone the SCPF coding sequence, expression cloning methods may be utilized to substantially reduce the screening effort. Recently, a one step procedure for cloning and expressing antibody genes has been reported (McCafferty et al., 1990, Nature 348:552-554; Winter and Milstein, 1991, Nature 349:293-299). Based on this technology, the SCPF gene may likewise be cloned directly into a vector at a site adjacent to the coat protein gene of a bacteriophage such as X or fd. The phage carrying the SCPF gene expresses the fusion protein on its surface so that columns containing an SCPF-specific antibody can be used to select and isolate phage particles with binding activity. A commercially available expression cloning system utilizing Lambda-Zap-bluescript (Stratagene, La Jolla, CA) may also be used for the cloning and antibody screening of SCPF cDNA libraries. Transient gene expression systems may be utilized to identify the correct SCPF gene. For example, the COS cell system Gerard Gluzman, 1986, Mol. Cell. Biol.

6(12) 4570-4577) may be used.

Due to the degeneracy of the nucleotide coding sequences, other DNA sequences which encode analogous .amino acid sequences for any known SCPF gene may be used in the practice of the present invention for the Scloning and expression of SCPF. Such alterations 15 include deletions, additions or substitutions of 15 different nucleotide residues resulting in a sequence that encodes the same or a functionally equivalent gene product. The gene product may contain deletions, additions or substitutions of amino acid residues within the sequence, which result in a silent change thus producing a bioactive product. Such amino acid substitutions may be made on the basis of similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity and/or the amphipathic nature of the 2 residues involved. For example, negatively charged amino acids include aspartic acid and glutamic acid; positively charged amino acids include lysine and arginine; amino acids with uncharged polar head groups having similar hydrophilicity values include the following: leucine, isoleucine, valine; glycine, alanine; asparagine, glutamine; serine, threonine; phenylalanine, tyrosine. Oligonucleotide sequences can be used to increase the copy number of a unique gene sequence by the polymerase chain reaction. This would provide for more specific probes than that obtained using degenerate oligonucleotides.

In addition, other DNA sequences containing caton but without substantial alteration of the biologic activities of the encoded SCPF protein may also be used in the practice of the invention. Such modifications include but are limited Sto additions, deletions or substitutions of amino acid residues in SCPF to create additional processing sites and/or elimination of glycosylation sites. For example, the removal of N-linked glycosylation sites in certain proteins results in reduced glycosylation on the expressed products which are particularly useful in yeast expression systems.

5.4. EXPRESSION OF SCPF BY RECOMBINANT DNA TECHNOLOGY In order to express a biologically active SCPF, the nucleotide sequence encoding SCPF, or a 51 S15 functionally equivalent nucleotide sequence, is inserted into an appropriate expression vector, ie., a vector which contains the necessary elements for the transcription and translation of the inserted coding sequence. Modified versions of the SCPF coding sequence could be engineered to enhance stability, production, purification or yield of the expressed product. For example, the expression of a fusion protein or a cleavable fusion protein comprising

SCPF

and a heterologous protein may be engineered. Such a fusion protein may be readily isolated by affinity chromatography; e.g by immobilization on a column specific for the heterologous protein. Where a cleavage site is engineered between the SCPF moiety and the heterologous protein, the SCPF protein can be released from the chromatographic column by treatment with an appropriate enzyme or agent that disrupts the cleavage site see Booth et al., 1988, Immunol.

Lett. 19:65-70; and Gardella et al., 1990, J. Biol.

Chem. 265:15854-15859).

Methods which are well known to those skilled in the art can be used to construct expression vectors containing the SCPF coding sequence and appropriate transcriptional/translational control signals. These methods include in vitro recombinant DNA techniques, synthetic techniques, and in vivo recombination/genetic techniques. See, for example, the techniques described in Maniatis et al., 1989 Molecular Cloning A Laboratory Manual, Cold Spring Harbor Laboratory, N.Y.

A variety of host-expression vector systems may be utilized to express the SCPF coding sequence.

1 These include but are not limited to microorganisms such as bacteria transformed with recombinant bacteriophage DNA, plasmid DNA or cosmid DNA expression vectors containing the SCPF coding sequence; yeast transformed with recombinant yeast expression vectors containing the SCPF coding 15 sequence; plant cell systems infected with recombinant virus expression vectors cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with recombinant plasmid expression vectors Ti plasmid) containing the SCPF coding sequence; insect cell systems infected with recombinant virus p expression vectors baculovirus) containing the SCPF coding sequence; or animal cell systems infectedwith recombinant virus expression vectors 25 retroviruses, adenovirus, vaccinia virus) containing the SCPF coding sequence, or transformed animal cell systems engineered for stable expression. Since SCPF has not been confirmed to contain carbohydrates, both bacterial expression systems as well as those that 3 provide for translational and post-translational modifications may be used; mammalian, insect, yeast or plant expression systems.

Depending on the host/vector system utilized, any of a number of suitable transcription and translation elements, including constitutive and inducible promoters, transcription enhancer elements, transcription terminators, etc. may be used in the expression vector (see Bitter et al., 1987, Methods in Enzymology 153:516-544). For examle when cloning in bacterial systems, inducible promoters such as pL of bacteriophage X, plac, ptrp, ptac (ptrp-lac hybrid promoter) and the like may be used. When cloning in mammalian cell systems, promoters derived from the genome of mammalian cells metallothionein promoter) or from mammalian viruses the retrovirus long terminal repeat; the adenovirus late promoter; the vaccinia virus promoter) may be used. Promoters produced by recombinant DNA or synthetic techniques may also be used to provide for transcription of the inserted SCPF coding sequence.

In bacterial systems a number of expression 15 vectors may be advantageously selected depending upon .15 the use intended for the SCPF expressed. For example, when large quantities of SCPF are to be produced, vectors which direct the expression of high levels of fusion protein products that are readily purified may be desirable. Those which are engineered to contain a cleavage site to aid in recovering SCPF are preferred.

i Such vectors include but are not limited to the E.

c21i expression vector pUR278 (Ruther et al., 1983, EMBO J. 2:1791), in which the SCPF coding sequence may 25 be ligated into the vector in frame with the lac Z coding region so that a hybrid SCPF-lac Z protein is produced; pIN vectors (Inouye Inouye, 1985, Nucleic acids Res. 13:3101-3109; Van Heeke Schuster, 1989, J. Biol. Chem. 264:5503-5509); and the like.

In yeast, a number of vectors containing constitutive or inducible promoters may be used. For a review see, Current Protocols in Molecular Biology, Vol. 2, 1988, Ed. Ausubel et al., Greene Publish.

Assoc. Wiley Interscience, Ch. 13; Grant et al., 1987, Expression and Secretion Vectors for Yeast, in Methods in Enzymology, Eds. Wu Grossman, 31987, Acad. Press, Vol. 153, pp.516-544; Glover, 1986, DNA Cloning, Vol. II, IRL Press, Wash., Ch. 3; and Bitter, 1987, Heterologous Gene Expressin in Yeast, Methods in Enzymology, Eds. Berger Kimmel, Acad. Press, Vol. 152, pp. 673-684; and The Molecular Biology of the Yeast Saccharomyces, 1982, Eds. Strathern et al., Cold Spring Harbor Press, Vols.

I and II. A constitutive yeast promoter such as ADH or LEU2 or an inducible promoter such as GAL may be used (Cloning in Yeast, Ch. 3, R. Rothstein In: DNA Cloning Vol.11, A Practical Approach, Ed. DM Glover, S1986, IRL Press, Wash., Alternatively, vectors may be used which promote integration of foreign

DNA

sequences into the yeast chromosome.

In cases where plant expression vectors are used, •the expression of the SCPF coding sequence may be Sdriven by any of a number of promoters. For example, :viral promoters such as the 35S RNA and 19S RNA promoters of CaMV (Brisson et al., 1984, Nature 310:511-514), or the coat protein promoter to TMV (Takamatsu et al., 1987, EMBO J. 6:307-311) may be used; alternatively, plant promoters such as the small subunit of RUBISCO (Coruzzi et al., 1984, EMBO J.

3:1671-1680; Broglie et al., 1984, Science 224:838- 843); or heat shock promoters, soybean or hspl7.3-B (Gurley et al., 1986, Mol. Cell. Biol.

25 6:559-565) may be used. These constructs can be introduced into plant cells using Ti plasmids, Ri plasmids, plant virus vectors, direct

DNA

transformation, microinjection, electroporation, etc.

For reviews of such techniques see, for example, Weissbach Weissbach, 1988, Methods for Plant Molecular Biology, Academic Press, NY, Section

VIII,

pp. 421-463; and Grierson Corey, 1988, Plant Molecular Biology, 2d Ed., Blackie, London, Ch. 7-9.

An alternative expression system which could be used to express SCPF is an insect system. In one such system, Autographa californica nuclear polyhedrosis virus (AcNPV) is used as a vector to express foreign genes. The virus grows in Spodontera frugiperda cells. The SCPF codina spemi, -1 j S ,isu into non-essential regions (for example the polyhedrin gene) of the virus and placed under control of an AcNPV promoter (for example the polyhedrin promoter).

Successful insertion of the SCPF coding sequence will result in inactivation of the polyhedrin gene and production of non-occluded recombinant virus virus lacking the proteinaceous coat coded for by the polyhedrin gene). These recombinant viruses are then used to infect Spodopter fruqiperda cells in which the inserted gene is expressed. see Smith et al., 1983, J. Viol. 46:584; Smith, U.S. Patent No.

4,215,051).

Eukaryotic systems, and preferably mammalian 15 expression systems, allow for proper posttranslational modifications of expressed mammalian proteins to occur. Eukaryotic cells which possess the cellular machinery for proper processing of the primary transcript, glycosylation, phosphorylation, and advantageously, secretion of the gene product may :be used as host cells for the expression of SCPF.

i Mammalian cell lines may be preferable. Such host cell lines may include but are not limited to CHO, VERO, BHK, HeLa, COS, MDCK, -293, and WI38.

25 Mammalian cell systems which utilize recombinant viruses or viral elements to direct expression may be engineered. For example, when using adenovirus expression vectors, the SCPF coding sequence may be ligated to an adenovirus transcription/translation control complex, the late promoter and tripartite leader sequence. This chimeric gene may then be inserted in the adenovirus genome by in vitro or in vivo recombination. Insertion in a nonessential region of the viral genome (e.g9, region El r E3) will result in a recombinant virus that is viable and capable of expressing the SCPF protein in infected hosts see Logan Shenk, 1984, Proc.

Natl. Acad. Sci. USA 81: 3655-3659). Alternatively, the vaccinia virus 7.5K promoter may be used. rf see, Mackett et al., 1982, Proc. Natl. Acad. Sci. USA 79: 7415-7419; Mackett et al., 1984, J. Virol. 49: 857-864; Panicali et al., 1982, Proc. Natl. Acad. Sci.

SUSA 79: 4927-4931). Of particular interest are vectors based on bovine papilloma virus which have the ability to replicate as extrachromosomal elements (Sarver, et al., 1981, Mol. Cell. Biol. 1: 486).

Shortly after entry of this DNA into mouse cells, the plasmid replicates to about 100 to 200 copies per cell. Transcription of the inserted cDNA does not require integration of the plasmid into the host's chromosome, thereby yielding a high level of Sexpression. These vectors can be used for stable 15 expression by including a selectable marker in the 1 5 plasmid, such as, for example, the fne gene.

Alternatively, the retroviral genome can be modified for use as a vector capable of introducing and directing the expression of the SCPF gene in host cells (Cone Mulligan, 1984, Proc. Natl. Acad. Sci.

USA 81:6349-6353). High level expression may also be achieved using inducible promoters, including, but not limited to, the metallothionine IIA promoter and heatshock promoters.

25 For long-term, high-yield production of recombinant proteins, stable expression is preferred.

Rather than using expression vectors which contain viral origins of replication, host cells can be transformed with the SCPF cDNA controlled by appropriate expression control elements promoter, enhancer, sequences, transcription terminators, polyadenylation sites, etc.), and a selectable marker. The selectable marker in the recombinant plasmid confers resistance to the selection and allows cells to stably integrate the plasmid into their chromosomes and grow to form foci which in turn can be cloned and expanded into cell lines. For example, following the introduction of foreign engiered c-ll may be allowed to grow for 1-2 days in an enriched media, and then are switched to a selective media. A number of selection systems may be used, including but not limited to the herpes simplex virus thymidine kinase (Wigler, et al., 1977, Cell 11: 223), hypoxanthine-guanine phosphoribosyltransferase (Szybalska Szybalski, 1962, Proc. Natl. Acad. Sci. USA 48: 2026), and adenine phosphoribosyltransferase (Lowy, et al., 1980, Cell 22: 817) genes can be employed in tk-, hgprt" or aprt" cells respectively. Also, antimetabolite resistance can be used as the basis of selection for dhfr, which confers resistance to methotrexate (Wigler, et al., 1980, Natl. Acad. Sci. USA 77: 3567; O'Hare, et al., 1981, Proc. Natl. Acad. Sci. USA 78: 1527); gpt, which confers resistance to mycophenolic acid (Mulligan Berg, 1981, Proc. Natl. Acad. Sci.

USA 78: 2072; neo, which confers resistance to the aminoglycoside G-418 (Colberre-Garapin, et al., 1981, J. Mol. Biol. 150: and hygro, which confers resistance to hygromycin (Santerre, et al., 1984, Gene 147) genes. Recently, additional selectable genes have been described, namely trpB, which allows cells to utilize indole in place of tryptophan; hisD, which 25 allows cells to utilize histinol in place of histidine (Hartman Mulligan, 1988, Proc. Natl. Acad. Sci. USA 8047); and ODC (ornithine decarboxylase) which confers resistance to the ornithine decarboxylase inhibitor, 2-(difluoromethyl)-DL-ornithine,

DFMO

(McConlogue 1987, In: Current Communications in Molecular Biology, Cold Spring Harbor Laboratory ed.).

PRODUCTION OF SCPF The present invention relates to SCPF of both membrane bound and secreted forms. SCPF is naturally 3 secreted by the human germ cell tumor line 751. SCPF can be isolated from the conditioned media of continuous cell lines and purified to homogeneity using a variety of protein purification procedures.

Alternatively, SCPF may be produced by recombinant

DNA

techniques, or by chemical synthesis methods.

5.5.1. PURIFICATION OF SCPF SCPF may be purified from culture supernatants of cells that secrete it; either the germ line tumor cell or genetically engineered recombinant host cell expression systems. In a specific embodiment, by way of examples infra, conditioned medium of 751 cell line is collected and SCPF purified by SDS-preparative gel electrophoresis. SCPF may also be purified by immunoaffinity methods using an anti-SCPF antibody.

In addition, SCPF may be purified using isoelectric :focusing methods.

Methods for purifying SCPF from crude culture media of cells may be adapted for purification of the 15 cloned, expressed product. In addition, where the SCPF coding sequence is engineered to encode a cleavable fusion protein, the purification of SCPF may be readily accomplished using affinity purification 2 techniques. For example, a protease factor Xa cleavage recognition sequence can be engineered abetween the carboxyl terminus of SCPF and a maltose •binding protein. The resulting fusion protein can be readily purified using a column conjugated with amylose to which the maltose binding protein binds.

The SCPF fusion protein is then eluted from the column with maltose containing buffer followed by treatment with Factor Xa. The cleaved SCPF is further purified by passage through a second amylose column to remove the maltose binding protein (New England Biolabs, Beverly, MA). Using this aspect of the invention, any cleavage site or enzyme cleavage substrate may be engineered between the SCPF sequence and a second peptide or protein that has a binding partner which could be used for purification, any antigen for which an immunoaffinity column can be prepared.

Procedures which may be used to isolate the SCPF of the i- incl..ude t commoniy used ror the separation of protein substances including, for example, treatment of a sample containing SCPF with common precipitants for proteins, followed by fractionation techniques such as ion exchange chromatography, affinity chromatography, ultrafiltration and various combinations thereof.

SCPF can be purified from a cell suspension by methods described in U.S. Patent Nos. 4,885,236 and 4,882,268, Sfor example. Other methods for purification of the polypeptide of the invention will be known to those of skill in the art (see, for example, Current Protocols in Immunology, Coligan, et al., eds. 1992, incorporated herein by reference).

15 The SCPF containing fractions can be subjected to SDS-PAGE under suitable conditions and the gel slice containing SCPF activity or corresponding to the molecular weight of SCPF is recovered. SDS-PAGE is performed according to the method of Laemmli, et al., (Nature, 227:680, 1970). Variations in conditions which are within a suitable range are understood to be encompassed within the purification procedure.

SCPF-containing fractions from SDS-PAGE can be isolated and further subjected to two-dimensional gel 5 electrophoresis according to the method of O'Farrell Biol. Chem. 2,0:4007, 1975). First dimension isoelectric focusing gels are run by standard methods using broad range ampholytes to resolve proteins with pi values between about 3.8 to about 8.0. Ampholyte 3 solutions from pH 2-11 are added in varying amounts depending on the pi of the protein of interest. If broad increased resolution in a narrow pH is desired, narrow range ampholytes can be added to broad range ampholytes in a 2:1 ratio. Preferably, SCPF and its corresponding isoforms are resolved using ampholytes which separate proteins with pi of about 5 to about 9, and more specifically from about 7 to about 8. Second dimension gels are generally run as 10-20% acrylamide gels, however, any conventional slab gel can be used.

Proteins resolved by two-dimensional gel electrophoresis can be detected by standard methods such as Coomassie Blue and silver staining.

Alternatively, proteins in a gel may be electrophoretically transferred to a blot transfer membrane and detected by staining with India ink or colloidal gold, or by western blotting. Preferably, the SCPF of the invention is detected by western blotting using the antibody of the invention.

The SCPF containing fractions can also be subjected to reverse phase HPLC and eluted with acetonitrile for example. The SCPF which is obtained i: is substantially pure to permit N-terminal amino acid 15 sequencing. The solution is dried under vacuum and redissolved in a small volume of acetonitrile 95% TFA The concentrated sample is then introduced in a sequencer connected to a phenylthiohydantoine (PTH) analyzer.

The biological activity of a gel purified cytokine, such as the SCPF of the invention can be tested in bioassays for stimulation (and/or inhibition) of proliferation of an indicator cell line. For example, SCPF activity can be assayed in ML-1 or KG-la cells.

5.5.2. CHEMICAL SYNTHETIC

METHODS

The SCPF molecule may also be produced in whole or in part by solid phase chemical synthetic techniques based on its amino acid sequence. (See Creighton, 1983, Proteins Structures and Molecular Principles, W.H. Freeman and Co., N.Y. pp. 50-60; Stewart and Young, 1984, Peptide Synthesis, 2nd ed., Pierce Chemical This approach may be particularly useful in generating segments of SCPF corresponding to one or more of its biologically active regions.

5.6. ANTI-SCPF ANTIBODY PRODUCTION Als ithin the scope of the invention is the production of polyclonal and monoclonal antibodies which recognize SCPF or related proteins.

Various procedures known in the art may be used for the production of polyclonal antibodies to epitopes of SCPF. For the production of antibodies, various host animals can be immunized by injection with the SCPF protein, or an SCPF peptide, including but not limited to rabbits, hamsters, mice, rats, etc.

O0 Various adjuvants may be used to increase the immunological response, depending on the host species, including but not limited to Freund's (complete and incomplete), mineral gels such as aluminum hydroxide, surface active substances such as lysolecithin, pluronic polyols, polyanions, peotides, oil emulsions, keyhole limpet hemocyanin, dinitrophenol, and potentially useful human adjuvants such as BCG (bacille Calmette-Guerin) and Corvnebacterium parvum.

In a specific embodiment of the invention, gel 20 purified SCPF was used to immunize rabbits for the generation of SCPF-specific antibodies. One such antiserum (SAM.1) was demonstrated to contain antibodies that specifically reacted with SCPF and *thereby, inhibited its activity on stimulating the growth of 751 cells in an autocrine fashion. See Section infra.

A monoclonal antibody to an epitope of SCPF may be prepared by using any technique which provides for the production of antibody molecules by continuous cell lines in culture. These include but are not limited to the hybridoma technique originally described by Kohler and Milstein (1975, Nature 495-497), and the more recent human B-cell hybridoma technique (Kosbor et al., 1983, Immunology Today 4:72; Cote et al., 1983, Proc. Natl. Acad. Sci. 80:2026- 2030) and the EBV-hybridoma technique (Cole et al., 1985, Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96). Techniques developed for prO.ductin o ;liixmeric antibodies" by splicing the genes from a mouse antibody molecule of appropriate antigen specificity together with genes from a human antibody molecule can be used Morrison et al., 1984, Proc. Natl. Acad. Sci., 81:6851-6855; Neuberger et al., 1984, Nature, 312:604- 608; Takeda et al., 1985, Nature 314:452-454). In addition, techinques described for the production of single chain antibodies Patent 4,946,778) can be adapted to produce single chain antibodies.

Antibody fragments which contain the binding site Sof the molecule may be generated by known techniques.

For example, such fragments include but are not limited to: the F(ab') 2 fragments which can be produced by pepsin digestion of the antibody molecule and the Fab fragments which can be generated by reducing the disulfide bridges of the fragments.

Antibodies to SCPF may find use in the qualitative and quantitative detection of membrane 20 bound or secreted SCPF in mature, precursor and subcomponent forms, in the affinity purification of SCPF protein, in the elucidation of SCPF biosynthesis, metabolism and function, and in the screening of SCPF expression libraries for gene sequences that encode immunogenic epitopes. Antibodies to SCPF may also be useful as diagnostic and therapeutic agents for germ cell or other tumors.

5.7. USES OF SCPF The functional activities and target cell specificity of SCPF provide for a wide variety of uses in vitro and in vivo. Any compound which includes SCPF, or fragments and derivatives thereof which exhibit growth stimulatory activity, either alone or in conjunction with other biologically active growth factors, inhibitors, or immunomodulatory agents, may be employed in the practice and method of the invention. SCPF, SCPF-related molecules and compositions thereof may be especially useful in augm~ntjng the proliferation of germ/stem cells including but not limited to hematopoietic stem cells.

A major impediment in the current attempts to achieve stable integration of exogenous genes in stem cells is the inability of the known cytokines to stimulate such cells to proliferate without differentiation. SCPF has been shown to be capable of inducing purified CD34' cells to enter the cell cycle and proliferate in long term culture (Section infra). The SCPF may be used to facilitate genetic manipulation of stem cells for use i in gene therapy of hematologic disorders including but not limited to sickle cell anemia.

The findings that SCPF is an autocrine growth factor produced by a cell line of neuro-ectodermal origin and that it also acts on cells of the hematopoietic lineages imply that SCPF may be a cytokine specific for primitive germ/stem cells of o' different tissue origins. It has been shown that stem cell populations exist in a variety of organs and .tissues including the brain, liver and skin. Further, hair loss has also been linked to a defect in stem cell proliferation surrounding hair follicles.

Therefore, SCPF may be a useful agent for treatment of Sconditions that require the growth of stem cell populations irrespective of their tissue of origin including but not limited to hair loss.

In addition, cells expressing the SCPF receptor may be detected by using labeled-SCPF or SCPF-related molecules in a receptor binding assay, or by the use of antibodies directed to the SCPF receptor itself.

Cells may be distinguished in accordance with the presence and density of receptors for SCPF, thereby providing a means for predicting responsiveness of Ssuch cells to the biological activities of SCPF.

5.8. METHOD FOR IDENTIFICATION

OF

CYTOKINES FROM GERM CErrL The present invention illustrates a novel approach to the identification and isolation of growth factors or cytokines having biologic activities on a variety of germ/stem cells. Any germ cell tumors can be obtained from surgical materials and prepared for in vitro culture for the practice of the invention.

The cell lines may be selected based on expression of certain markers or responses to certain growth factors, and both adherent and non-adherent cell 1 populations may be maintained. Tissue lineage characterization of the established cell lines can be determined by flow cytometry analysis using antibodies to various cell surface and internal cytoskeletal elements including the leukocyte antigens and 1 5 intermediate filaments. Further, expression of oncogenes including c-myc, c-fms, c-ras, c-myb, c-fos, c-src, c-erb, c-neu, c-ros, and c-sis can be examined by the use of molecular probes.

In order to identify new cytokines produced by 20 the established cell lines, cells may be metabolically labeled and secreted proteins analyzed by SDS-PAGE.

Alternatively, culture supernatants may be directly analyzed by applying them to various cell types used as indicators which are known to respond to specific cytokines in bioassays. Having identified a major protein by SDS-PAGE and/or by biologic activity, the protein may be purified by SDS-preparative gels, ion exchange chromatography, and isoelectric focusing gels (See Section infra). Purity of the proteins can be verified by SDS-PAGE, quantified by protein assays, their activities confirmed in bioassays, and used as immunogens for the production of polyclonal and monoclonal antibodies.

The purified proteins can be further tested in bioassays to stimulate and/or inhibit proliferation of a variety of indicator cell lines of diverse tissue types. Radiolabeled proteins may also be used to identify Oi 1 .identif their cell surace receptors by methods such as affinity labelling. Specific antibodies to the cytokines may be used to identify and quantify membrane forms and secreted forms of the cytokines, to study their biosynthetic pathways, to affinity purify the proteins and to immunoscreen expression libraries for the molecular cloning of the coding sequences using, for example, the approaches and techniques described supra.

0 6. EXAMPLE: GENERATION OF 751 GERM CELL 1 TUMOR LINE THAT PRODUCES

SCPF

The sections below describe experiments indicating that the 751 tumor cell line represents an exceedingly Primitive neuro-ectodermal cell line that exhibits unusual characteristics in growth and cell :5 surface marker expression. The growth of this cell line is regulated by one or more growth factors heretofore undescribed.

6.1. MATERIALS AND METHODS 6.1.1. CELL CULTURES :20 The 751 cell lines were maintained in RPMI 1640 supplemented with 10% fetal bovine serum, Lglutamine, and antibiotics (penicillin/streptomycin). The viability and the cell concentration was assessed using trypan blue exclusion. The cell concentration was adjusted to give 1 x 105 cells/ml and seeded into cm tissue culture flasks, then incubated at 37*C in an atmosphere of 5% C0 2 in air.

6.1.2. ANIMALS The triple-immune-deficient by/mu/xid female mice 3 (BNX mice) were obtained from Harlan Sprague Dawley Inc., IN, and maintained in germ-free animal colonies.

The mice were fed sterile Rodent Blox and acidified water adlibtium, and used in experiments when 7-9 weeks old.

6.1.3. IN VITRO CELL GROWTH

KINETICS

The in vitro growth kinetics of the 751 cell I *1jeu out as roilows. The initial growth curve studies were set up to obtain optimal starting cell concentration. The initial growth curves, therefore, were run at 5x10 3 5x10 4 and 1xl05 cells/well. Cell counts were performed at 12-hour intervals for 7 days. All cell counts/sample were carried out in triplicate. These preliminary studies revealed that the optimum cell number for all the subsequent growth curves was 5x10 4 The 751 cells were then plated in 12 well plates to give a final concentration (in 2 ml volumes) of 5xl04/well. All counts were performed at 12-hour intervals for 7 days -and the percentage viability was also recorded All cell counts/sample were carried out in triplicate.

6.1.4. IN VIVO CELL GROWTH

KINETICS

The ability of this cell line to transplant into the BNX mice was tested. To determine the rate of tumor growth, Log 10 serial dilutions fo 751-NA cell S line was inoculated ml) subcutaneously over the hindquarters of the BNX mice. Eight mice per dilution were used. Inoculated mice were examined twice a week "for the appearance of tumors. Once tumors were evident, the tumor size was measured, every two days, using calipers. Tumor measurements were taken by measuring two perpendicular diameters and the tumor area estimated by multiplying the two values together.

6.1.5. FLOW CYTOMETRIC

ANALYSIS

751 cells were screened with monoclonal antibodies that were specific for leukocyte cell surface markers: CD2, CD3, CD4, CD8, CD5, CD7, CDI4, CD19, CD20, CD33, CD34, HLA Class I and Class II. These antibodies were made available by Becton Dickinson, CA. The flow cytometric analysis was performed as follows (Griebel et al., 1988). The 751 tumor cells were centifuged (1,000 rpm for 10 minutes) and resuspended at a concentration of 2x10 7 in 0.1 M PBS containing 0.2% gelatin, 1 mM sodium azide and 2%

I

normal rabbit serum. Fifty microliters of the cell suspension was added to 5041 or the appropriate monoclonal antibody in a 96-well flat-bottomed microtiter plate and incubated for 30 minutes at 4C.

The cells were then washed three times with ice-cold PBS-gelatin and incubated for a further 30 minutes at 4°C with 100 ~l of FITC-labelled F(ab)'2 goat antimouse immunoglobulin (heavy and light chain specific) (Cooper Biomedical, Malvern, PA) diluted 1/75 with PBS-gelatin. Cell aggregates were removed from all samples by prefilteration through a 2millimicron. Nylon monofilament mesh immediately prior to FACS analysis (Small Parts Inc., Miami, FL).

Appropriate controls were included to detect nonspecific labelling. In these controls, the bone marrow was reacted with either FITC labelled F(ab)'2 alone or with an isotype matched monoclonal antibody specific for an irrelevant antigen. The FITC-labelled 751 tumor cells were analyzed using a Becton Dickinson Fac-Scan flow cytometer. Data from 20,000 cells were collected to analyze the patterns of monoclonal antibody reactivity. Two parameter analysis of forward angle light scatter (FALS) versus 90% light scatter (LI90) was used to eliminate blots of FALS versus fluorescence and as histograms of fluorescence versus cell numbre. The data were also given as of cells positive for a given phenotype marker.

Antibodies to various antigens were purchased from commercial sources: anti-cytokeratin, anti-NF200, anti-NF160, anti-NF68 (Sigma, St. Louis, MO); anti- 3 vimentin (Boeringer Mannheim); anti-GFAP and anti-NSE (Dakopatts, Glostrup, Denmark). FITC-conjugated secondary antibody reagents were purchased from Sigma.

6.2. RESULTS 6.2.1. CASE HISTORY In 1989, a 19-year old white female presented to her local physician complaints of headaches and double vision. She was diagnosed by CT scan as having a large suprasellar mass. The mass was surgically debulked and a ventricul nnp4 t-nna I VD\ in place. Postoperative local radiation was administered with a total dose of 5000 cGy. She was apparently in good health, with control of residual tumor, until one year later, when she again presented with complaints of headaches. She was also found to have multiple subcutaneous masses along, the VP shunt.

Physical examination revealed a mass on the right side of her skull near the VP shunt, and two masses on her chest wall along, the shunt tubing. CT scan of her head revealed local recurrence and a soft tissue mass near her shunt. Furthermore, metastatic deposits in her abdomen were also found. The lesion on the skull was aspirated; cytology of cells from this area was consistent with a germ cell tumor. In February of 1990, to further define the histology, one of the chest-wall masses was resected. Histological examination of the tumor revealed non-germinomatous mixed germ cell tumor similar to the original biopsy taken in 1989, with a prominent population of small primitive cells.

6.2.2. ORIGIN OF 751 CELL LINES At the time of surgery in February 1990, a small portion of tumor from the chest wall was sent to the "25 laboratory for cell isolation and in vitro growth in cell culture. The tumor was divided into approximately 3 mm portions. The minced tumor was subjected to limited digestion using versene-trypsin at 37 0 C for 10 minutes. After enzyme treatment, the non-digested tissue was removed by sedimentation, and the supernatant fluid collected, centrifuged, and the cell pellet harvested. The cell pellet was resuspended and cultured in growth medium.

Primary cultures were examined daily and media changed weekly. The original cell cultures contained cells which were both adherent and non-adherent to the plastic dishes. Over the next two months, the number of morphologically distinct cell types diminished to the point where there only appeared to be two defined populations replicating as a co-culture, one which grew as an adherent cell, the other as a non-adherent cell.

Approximately 16 weeks into the culture of this germ cell line, the non-adherent cell outgrew the adherent population and became a predominant cell type cloned by limiting dilution and designated 751-NA. Surprisingly, 751-NA was found to be a murine cell line as determined by karyotype analysis and its expression of murine isoforms of various cellular enzymes. The 751-NA has been maintained in in vitro culture in stable form using the aforementioned growth medium through multiple-cell-population passages. To develop the murine tumor model from the 751-NA cell line, cells were injected into the subcutaneous tissues of the

S.

15 beige, nude, x-linked immunodeficient (BNX) mouse and germ cell tumors allowed to develop, similar in histologic appearance to the original patient's tumor. Tumors from the BNX-mouse subcutaneous site were aseptically removed, treated with versene trypsin, supra, and a new non-adherent cell line reestablished in 20 in vitro culture; designated 751-MU. Two further cell lines which were taken from metastatic deposits in the liver and drainage lymph node were established designated, 751-LIV and 751i: LN, respectively.

6.2.3 CHARACTERIZATION OF THE 751 CELL LINES 25 The characterization of the established 751 cell lines examined both growth kinetics and phenotype. In vitro growth was examined using growth curve analysis and showed unique growth pattern with little or no lag phase, but logarithmic growth initially, a short stationary phase, then dramatic decline in viability. The rapidity of growth is illustrated by the calculated doubling time during the log phase of 7-to-8 hours.

The growth of the cell lines in vivo was assessed using a BNX murine model. To determine the rate of growth of the cells when injected into the mouse, serial log dilutions of the various 751 cell lines were inoculated into the subcutaneous tissue of the hindquarters. The mice were examined twice wekl-1 and tumor measured in two perpendicular diameters. It was found that tumors arose from inocula as small as 100 cells with tumor evident at 20 days post-inoculation. Inoculation of 1 x 103 cells gave rise to tumors in only seven days rather than 2-3 months, as most reported murine tumor models have found. In addition, most reported tumors do not grow with inocula of less than 5 x 105 cells.

0o To determine the origin of this cell population (751-NA, 751-LIV, 751-LN) in terms of cells were analyzed by flow cytometry using both polyclonal and monoclonal antibodies directed against specific cell .i determinants for neuro-ectodermal germ cells, neuronal 15 lineages, and glial cell lineages. The following antibodies were used to complete this study: Placental Alkaline Phosphatase (PAP) and Human Chorionic Gonadotropin (XCG) were used as markers to detect germ cells of non-neuronal cells; Cytokeratin and Vimentin were used as markers for germ cells of neuro-ectodermal origin; Glial Fibrally Acidic Protein (GFAP) as a marker for glial lineage; and Neural Specific Enolase (NSE), and Neural Filament Protein ~(NFP) 68,150,&200 as markers for cells of neuronal 25 lineage. Results indicate that the cell populations 25 (751-NA, 751-MU, 751-LN) represent a primitive brain germ cell which could, under the appropriate conditions, form cells of either neuronal or glial lineage (see, FIG. No other cell line of human origin that exhibits this phenotype has been cultured in vitro.

Studies were designed to ascertain whether the 751-cell line expressed any known leukocyte markers, including the HPCA-1 (CD34). FACS analysis of the 751 germ cell tumor for expression of CD45, CD19, CD3, CD4, CDS, CD2, CD5, CD7, CD10, CD14, CD71, and CD34 shows that this primitive cell line is devoid of all lukocyCte markers including the CD34 marker.

6.2.4. ONCOGENE EXPRESSION BY 751 CELL LINES The role of proto-oncogenes in the malignant phenotype expression of cells (both in vitro and in Svivo) has been investigated in many cell culture systems. Using DNA probes to a number of different oncogenes, Northern analysis was performed. These analyses showed that 751 cells contain abundant mRNA's for the oncogene c-myc as well as oncogene receptor c-fms. This is especially significant, as the c-fms oncogene serves as receptor for macrophage-colony stimulating factor (M-CSF). While the M-CSF receptor has been described on microglia in the brain, its presence on primitive cells of neural origin has not 5 been reported. It is, however, found on progenitor 5 cells in the bone marrow and is one of the growth factors involved in lineage-specific differentiation of monocyte/macrophage cells. The expression of this receptor indicates a role of M-CSF in the proliferation and differentiation of primitive germ cells.

7. EXAMPLE: STEM CELL PROLIFERATION FACTOR S* DERIVED FROM THE 751 CELL LINE The experiments described below demonstrate that SCPF is 32 kDa when secreted and 37 kDa when cell 25 bound. Two-dimensional gel electrophoresis of the purified protein indicates the existence of multiple isoforms of the protein with PIs ranging from about to 7.1. MATERIALS AND METHODS 7.1.1. RADIOLABELLING AND POLYACRYLAMIDE GEL ELECTROPHORESIS The 751-tumor cell line was grown in Dulbecco's Minimal Essential Medium (DMEM) supplemented with fetal bovine serum and antibiotics (Penicillin/Streptomycin) to a density of 106 cells/m.

in a 30 ml culture flask. Once the required density was reached, the cells were washed free of the growth medium and were recultured in 75% methionine-free

DMEM

suPPlemented with 5P nDMM ta4,...n et.ili.ne and_ 2% of ["S]-Methionine (Amersham, IL) and re-incubated.

At 24-hour intervals, the supernatants were harvested, configured to remove non-adherent cells, and stored at S-20 0 C. The "S-labelled supernatants were then added to sample buffer (Tris-HCl, 2-mercaptoethanol, glycerol, 2% SDS, and .001% bromophenol blue) and heated at 100 0 C for 5 minutes. The samples were then applied to SDS-PAGE and electrophoresed as previously described. Following electrophoresis, the gel was fixed in TCA glacial acetic acid (10% v/v) and methanol (30% After fixation the gels were soaked in Fluoro-hance" (Research Products Inc., Prospect IL) for a further 30 minutes. The gel was removed, placed upon fiber paper (pre-wet) and dried under a vacuum with heat (60 0 Following drying, the gel was exposed to high speed x-ray field (Kodak X-omat AR) and stored at -70 for 24-48 hours after which time the autoradiographs were developed and 0 analyzed.

Cell lysates, purified proteins and supernatants from the 751-cell lines were solubilized in electrophoresis buffer and analyzed on 12% SDSpolyacrylamide gels using the discontinuous buffer 25 system of Laemmeli (1970). Unless otherwise stated, the electrophoresis was performed under denaturing conditions. In each experiment, molecular weight markers (Bio Rad Laboratories,) were electrophoresed in parallel and visualized by staining with Coomassie Blue.

7.1.2. GEL PURIFICATION OF SCPF Serum-free supernatants were harvested from 751- NA cells 48 hours post culture. The supernatants were concentrated 20-fold using a Savant concentration and then dialyzed. The concentrated sample was then applied to a 12% preparative SDS-PAGE. Following the SDS gel electrophoresis, the gels were subjected to negative staining with 0.3M CuCI. The protein band of interest was removed from the gel, cut into small fragments, and placed in a dialysis bag (12-14,000 molecular weight cut-off) with 200 gl of elution buffer (g25mM Tris-Glycine, pH The sample was then electro-eluted at 100 V for 18 hours at 4°C.

Following electroelution the current was reversed for 30-40 seconds, the dialysis bag removed, and the sample harvested and dialyzed overnight. All elutriation preparations were checked for purity by SDS-PAGE prior to use as an immunogen or for use in cell proliferation assyas.

7.1.3. PREPARATION OF ANTI-SCPF ANTIBODY New Zealand white rabbits were bled prior to immunization and the pre-immune sera used to establish base lines. Rabbits were immunized subcutaneously with 7 Ag of purified SCPF polypeptide containing Ribi adjuvant. Two weeks following the initial injection, the rabbits were given a second injection containing polypeptide and Ribi adjuvant. The rabbits received a minimum of 5 subcutaneous inoculations with the immunogen plus Ribi adjuvant. The rabbits were bled at each of the innoculation time points and the serum tested by Western Blot for the presence of antibody reactive to the 32 kDa proteins. All sera containing 25 high concentrations of antibody specific for the 32 kDa protein were aliquoted and stored at -700C.

7.1.4. WESTERN IMMUNOBLOTTING Cell lysates from the 751-NA tumor cell line were prepared in electrophoresis buffer and the proteins resolved using SDS-polyacrylamide gel electrophoresis (Laemmeli, 1970). Proteins present in the gels were transferred to nitrocellulose based upon the technique described by Towbin et 1a., 1979, using the Bio-Rad Semi-Dry Transblot Apparatus. The gel was equilibrated in electroblot buffer (25 mM) Tris (192 mM) glycine and v/v) methanol at pH 8.3. The nitrocellulose membrane was also equilibrated in this buffer. Following equilibrium, the nitrocellulose membrane was positioned upon the filter paper on the platinum anode, and the gel was then layered on top and followed by presoaked filter paper. After positioning the cathode, the sample was blotted/electrophoresed at 25 volts for 35-40 minutes.

Following transfer, the membrane/blot was washed four times in phosphate buffered saline containing gelatin and Tween 20 (PBS-gel-tween). The blots were incubated overnight with the rabbit-polyclonal antibody, previously diluted in PBS-Tween. Following incubation, the blots were washed four times in PBS- Gel-Tween and then incubated with peroxidase labeled goat anti rabbit (Sigma, St. Louis, MO) for one hour and then washed twice in PBS-Tween and then twice in 15 PBS alone. Substrate (0.05% 4 chloro-l-naphthol and 30% H 2 0 2 was added and the blot incubated in the dark at room temperature for 60 minutes. Positive reactions were indicated by the appearance of dark blue bands.

20 7.1.5. CLONOGENIC ASSAYS 751-tumor line is capable of forming colonies than 128 cells/colony) in methyl cellulose containing DMEM supplemented with 10% FBS. 10' cells were added to 1.0 ml of methyl cellulose, to this was also added varying dilutions of the polyclonal rabbit antibody to the 32 kDa protein in a volume of 100 pl. The sample was well mixed and plated in 20 mm petri dishes and inoculated at 37°C in an atmosphere of 5% CO 2 in air.

At 48 hours post-culture, the number of colonies was enumerated using an inverted light microscope.

Antibodies specific for various colonystimulating factors were purchased from Genzyme (Boston, MA) 7.1.6. LONG-TERM CULTURES (GORDON-TYPE

CULTURES)

In order to grow human hematopoietic stem cells in long-term in vitro culture, adherent cell populations are required to provide soluble and cell contact-dependent factors. Human marrow aspirates were collected in medium containing preservative-free heparin and diluted in long-term culture medium to give a final volume of 8 ml containing 2 x 10 7 Snucleated cells in a 25 cm 2 tissue culture flask (Gordon et al., 1987, Exp. Hematol. 15:772). The growth medium consists of a-MEM supplemented with inositol (40 mg folic acid (10 mg ml-1), hydrocortisone (10 6 2-mercaptoethanol (2x 10 4 and a 1:1 mixtures of horse serum and FBS to give a final serum concentration of 25%. To facilitate attachment, the cultures were placed at 37°C. After 4 days, the medium and non-adherent cells were collected, centrifuged over Ficoll/Hypaque to remove granulocytes and red cells, and the light density fraction returned to the culture flask. Thereafter, half of the growth medium and non-adherent cells were replaced at weekly intervals with fresh medium until a confluent adherent monolayer forms.

Medium and non-adherent cells were removed from the long-term cultures and 2 ml of fresh medium added.

The flasks were then irradiated at 2000 rad to eliminate hematopoietic cells present within the adherent layer. Following irradiation, the medium was 25 removed and replaced with 8 ml fresh medium containing the purified cell populations to determine whether they would reconstitute and initiate myelopoiesis in the cultures. As controls, some long-term cultures were reconstituted with medium only to demonstrate that the irradiation was sufficient to eliminate all hemetopoietic progenitors (negative control). In addition, some long-term cultures were reconstituted with normal bone marrow cells (positive control).

Following reconstitution, half of the medium and nonadherent cells were collected weekly, counted, and plated in methylcellulose cultures containing growth factors. In addition, at certain time points, a culture flask was sacrificed and the adherent cells subjected to trvDsini 7~a- obt a, 1 a_ le cel a single ceil suspension for hematopoietic colony assay.

7.1.7. IN VITRO PROGENITOR CELL ASSAYS The following assays were the standard protocols used to measure CFU activity of cells.

The pre-colony-forming unit (Pre-CFU) assay was designed to detect early hematopoietic progenitors in human marrow (Smith et al., 1991, Blood, 77:2122).

The isolated cells were incubated with rIL-la (100 U ml-) and rIL-3 (50 ng ML harvested and enumerated seven days post-culture. 1 x 10' cells plated with 1000 U ml- 1 of recombinant GM-CSF in 0.36% agarose and colonies 50 cells) were scored 14 days after incubation.

15 To detect the myelomonocytic/erythroid precursor cells (CFU-GEMM) and the progenitor cells for the erythroid series (BFU-E), a combined CFU-GEMM/BFU-E assay was used (Ash et al., 1981, Blood 58: 309).

S..Briefly, 1 x 10' purified stem cells were plated in mm diameter plates in a total volume of 1.0 ml of Iscove's modified Dulbecco's medium supplemented with x 10' M 2-mercaptoethanol, 30% FBS, 100 U ml of human rIL-3 and 1.0 U ml of Epo and 0.9% methyl cellulose. The cultures were incubated for 14 days at 370 C in a humidified atmosphere containing 5% CO 2 and 02 in air. Colonies 50 cells) were enumerated using an inverted microscope.

Early hematopoietic progenitors representative of CFU-GM were also detected (Iscove et al., 1971, Blood 37:1). Briefly, 1 x 105 purified stem cells were plated in 35 mm diameter petri dishes in a final volume of 1.0 ml a-MEM supplemented with 2% FBS, 0.6% L-glutamine, 0.9% methyl cellulose and 100 U ml1 of human recombinant rIL-3. The cultures were incubated as described for CFU-GEMM assays and colonies enumerated using an inverted microscope.

7.2. RESULTS 7.2.1. BIOCHEMICAL IDENTIFICATION OF SCPF To visualize proteins secreted by the 751 cell line, pulse chase experiments were performed using ["S]-methionine. Cells were labelled for 12 hours in methionine-free media, after which time they were placed in cold growth media containing methionine.

The "S-labelled supernatant was then subjected to SDS-PAGE. One major protein was found to be secreted from the 751 tumor cells, the calculated apparent molecular weight (by regression analysis) was shown to be 32 kDa. Furthermore, maximum secretion of this protein was found to occur at 24-36 hours post-culture :i (FIG. 2).

Isolation of this protein was achieved by 15 resolution of the secreted polypeptides by SDS-PAGE and identification of the 32 kDa polypeptide by migration relative to molecular weight markers. Once identified, proteins were transferred by electroblotting onto nitrocellulose and the region 20 corresponding to the 32 kDa protein cut out and dissolved in dimethyl sulfoxide (DMSO). This was "o inoculated into rabbits for the generation of a polyclonal antibody generated.

The specificity of the antibody was tested 25 against whole cell lysates from 751-LN using a western "immunoblotting technique. In this system, the proteins were transferred to nitrocellulose using the Bio-Rad semi-dry transfer apparatus and then subjected to a modified colorimetric ELISA. Positive band(s) reactions were indicated by the appearance of dark blue bands. These assays showed a polyclonal antibody that reacts specifically with a single protein of an apparent molecular weight (calculated by regression analysis) of 37 kDa (Fig. This, in conjunction with the molecular weight of the secreted protein (32 kDa) suggests that: a signal sequence exists to transport the secreted protein to the cell surface; a transmembrane component to the molecule anchors the protein to the membrane; and twn f t_ protein exist, one a membrane-bound species (37 kDa) and the other a soluble extracellular species of 32 kDa molecular weight. Both forms may act as a "growth factor" with the membrane-bound form additionally involved in cell-cell interactions during normal germ cell development.

7.2.2. AUTOCRINE GROWTH REGULATION

OF

GERM CELL TUMOR LINE BY SCPF Using the polyclonal antibody derived against the 32 kDa protein, colony inhibition assays in methyl cellulose were conducted. In previous experiments, 751 cells were shown to form colonies of 50 cells in 48 hours in methyl cellulose. If the 32 kDa protein b was an autocrine factor regulating the growth of tumor cells, blocking the binding of the protein to its cellular receptor should decrease cell replication and growth of the colonies. Using serial dilutions of the rabbit polyclonal anti-32 kDa antibody, 751-NA, 751-MU, and 751-LN tumor cells were mixed into methyl cellulose containing various serum dilutions, incubated at 370C for 48 hours, then newly-formed colonies counted. At a reciprocal dilution of, 1/20, the antibody inhibited 98% of colony formation. This inhibition was shown to be antibody concentration-dependant, with significant inhibition 25 occurring at serum dilutions of 1/120.

Normal rabbit serum at a 1/20 dilution did not block colony formation (FIG. Furthermore, the ability of the anti-37 kDa antibody to block cell proliferation was tested in 3 H-thymidine uptake assays (FIG. This figure shows t.Iat the antibody does in fact inhibit cell proliferation and that this inhibition is specific for germ/stem cells, since only the 751-Mu Met and the BO Bm.1 cells were inhibited.

3S The A251 neuroblastoma cell line was not inhibited.

44 7.2.3. INTERACTION OF SCPF WITH HUMAN BONE MARROW CELL POPULATIONS The experimental results described below indicate that the anti-SCpF antibody (SAM.1) specifically interacts with a small population of bone marrow cells and furthermore, this population appears to fall within the CD34* compartment. Finally, the anti-SCPF recognizes a marker distinct from the CD34 protein and may be important in the delineation of a stem cell population.

Due to the primitive nature of the 751 cell and that it appears to be regulated by an autocrine growth factor (SCPF), the following experiments were designed to determine whether the purified native protein would interact with bone marrow cells. This interaction was analyzed using bone marrow-methyl cellulose clonogenic assays; 3 H-thymidine incorporation assays; and flow cytometry. Figure 3 shows an SDS-PAGE-gel stained by Coomassie blue and a Western blot using SAM.1 polyclonal antibody of the purified native 37 kDa protein used in these assays. A single 20 band was present on the gel migrating at 37 kDa (FIG.

3A). A nitrocellulose blot of this gel when reacted with SAM.1, antibody revealed a band in the same position (FIG. 3B). When the purified SCPF was used in clonogenic assays at varying concentrations (Table no colonies of defined morphology were observed.

9 999 *99 .9 9* .99 9 9. 9 9 9*9 *9* 9 9 *9 9 9 9. 9 9 9 99999 99 99 9 9 9 99 999 9 9 9* 999 *9 9 9 99 999 9. 9 TABLE 1 Human Bone Marrow Clonogenic Activity of Stem Cell Proliferation Factor Stimulant

GM

G M BLAST

TOTAL

r human GM-CSF 50u/ml u/nl.

1 U/Ml.

26/31 14/20 5/3 70/59 52/41 6/1 11/15 6/5 1/0 107/ 105 72/66 12/4 751-conditioned media (x 10 Conc) 751-SCPF (native) 100 pig/rn.

751-SCPF (native) 10 p~g/ml 751-SCPF (native) 1 pig/mI Control Media alone 9/7 16/15/ 19 11/13/9 6/8 /7 Assay: -Clonogenic (methyl. cellulose) -In vitro 1 X 10' Non-adherent cells well -14-day assay However, blast-like cells in very loose clusters were observed in these assays. These blast-like cells were removed from the clonogenic assays placed in suspension culture with and without stromal feeder layers and expanded using SCPF. The suspension Swithout stromal feeder cells were harvested at 96 hours post-culture and subjected to flow cytometric analysis using the monoclonal antibody HPCA-1 (anti CD34) an isotype control was used as a negative control and W6/32 (anti-human HLA Class 1) monoclonal as a positive control. Figure 6 is a flow cytometric analysis of these cells. All the cells stained with the W6/32 anti-HLA class I, furthermore a high percentage of the cells also reacted with anti-CD34.

It was evident that not all the cells were CD34-.

SThis may have been due to removal of non CD34 cells from the clonogenic assay prior to the expansion in suspension culture or differentiation of cells while in the suspension culture. However, this was an indication that the SCPF protein interacted with cells of the CD34 phenotype. Cells placed in the long-term cultures with stromal feeder layers (FIG. 7) were analyzed for continuous growth under Gordon-culture conditions.

Figure 7 shows that these cells proliferated in 25 long term Gordon-culture in the absence of SCPF. It appears that stromal cells were important for both soluble factors and that cell-cell contact in order to maintain good growth and viability. Cells given stromal conditioned media only did not proliferate or survive. Cells were removed at 72 hours from the Gordon cultures and tested for replating efficiency in the presence of recombinant GM-CSF (Table 2).

*99 a *9 9*9 9 9 9* 9 4 .49 9** 99 4 9 9 4 9. 4 99* 9 9 9 4 99 0. 9 9 4. 94* 49 .4 99 9 TABLE 2 Replicating Efficiency of SCPF Stimulated Bone Marrow Cells: Response to Human Recombinant

GM-CSF

Colony Type (Morphology) Treatment/Culture Conc (u/ml) G GM M Total Gordon cultures human r-GM-CSF 100 .Medium alone 1 2I It appears that the cells induced in the colony assays, then expanded in Gordon- ,,lrr abe respond to GM-CSF and form colonies of granulocytes monocytes and mixed GM cells, indicating, therefore, their ability to undergo lineage differentiation into myeloid cells. Proliferation of bone marrow cells, as measured by 'H-thymidine incorporation, also indicated that SCPF induced cells of bone marrow origin to proliferate (FIG. 8).

From the foregoing experiments, it is evident that SCPF interacts with a population(s) of bone marrow cells. Since a polyclonal rabbit antibody (SAM.1) had been produced against SCPF, and that SCPF was cell bound, flow cytometric analysis of bone marrow cells was carried out to ascertain the phenotypic nature of the cells in bone marrow that Swere interacting with SCPF. The ability of SAM.1 to recognize human bone marrow cells was tested using both adherent depleted human bone marrow cells and human cord blood as a source of newly hematopoietic stem cells. Figure 9 shows that SAM.1 binds to a very small population,of cells within bone marrow and cord blood In an attempt to define this population, two-color FACS analysis was performed using an anti-CD34 phycoerythrin (PE) labelled 25 antibody and the SAM.1 fluorescein isothiocyanate (FITC) system (FIG. 10). From these experiments and the previous finding that 751 cells do not express CD34 so that SAM.1 is not directed to the CD34 marker itself, it is apparent that SAM.1 recognizes a population of cells that co-express both the CD34 marker and SCPF.

The population of cells that are both CD34* and SCPF* represents 1.65% of the total cell population examined (FIG. 10). The ability of SAM.1 to recognize cell populations in murine, bovine, and ovine bone marrow was also examined by flow cytometry. In all cases, SAM.1 failed to recognize any significant population of cells from the bone marrow of these nonhuman species.

Flow cytometry studies were conducted on purified CD34* cells using the anti-SCPF antibody. The CD34* population had been separated from normal human bone marrow using using immunomagnetic beads coupled to anti-CD34 monoclonal antibodies and stored in liquid nitrogen prior to their use in flow cytometry (Kessler et al., 1987, Blood 70:321). On both single and two-color analysis, SAM.1 recognizes the CD34-selected population (FIG. 11). Furthermore, there is no competition between SAM.1 and anti-CD34 (FIG. 12). In these experiments, the CD34* cells were either incubated with SAM.1 alone or a mixture of SAM.1/anti-CD34. As can be observed in FIG. 12, 15 anti-CD34 did not interfere with the ability of SAM.1 to bind to these cells. These experiments were repeated with the exception that the CD34 cells were incubated with anti-CD34 alone or with a mixture of SAM.1/anti-CD34. As shown in FIG. 12A, SAM.1 did not 20 interfere with the binding of anti-CD34 antibody.

This again indicates that SAM.1 antibody recognizes a distinct cell surface antigen.

7.2.4. LONG TERM CULTURE OF CD34 CELLS USING SCPF Long-term cultures of the CD34 cells were 25 S25 initiated in the presence of exogenously added purified native SCPF. Control cultures without any exogenously added growth factors, as well as cultures with 100 U/ml of interleukin 3 (IL-3) and 100 U/ml of interleukin 6 (IL-6) were included. Purified CD34 cells were seeded into wells of a 24-well plate at 200,000 cells/ml and appropriate growth factors added.

The purified SCPF was added at varying concentrations (1 ug/ml to 10ng/ml). Every three days the culture media were changed and exogenous growth factors added.

All cultures were examined daily to assess the viability and condition of the cells.

W

I

The results from these studies are summarized in FIG. 13. The cilet-1i-o -hA- ^v t. L-3 or ILexpanded rapidly with few non-viable cells present.

By day 7, the cultures needed to be passaged. The SCPF treated cultures, on the other hand, underwent a rapid decline in cell viability such that by day 7, only 10-15% of cells were viable. However, this residual population of CD34* cells are now SCPF responsive and have been proliferating in culture for twelve weeks. The control cultures (without growth factors) were maintained for 3 weeks before they eventually died out. The cells receiving the IL-3 or IL-6 are of mixed morphology and contain both adherent and nonadherent cells. Cytocentrifuged preparations show the cultures to contain many mature granulocytic 15 cells as well as mature blast-like cells. These IL-3 and IL-6 treated cells were maintained in continuous culture for up to 16 weeks. The SCPF-treated cells are more uniform in size, are all mononuclear and blast-like in appearance, and are nonadherent. From the dose response experiment, it appears that the optimal concentration of SCPF lies between 50 ng/ml and 10 ng/ml.

At 12 weeks post culture, the SCPF-treated CD34t cells were examined by flow cytometry for the presence 25 or absence of CD34, CD38, and DR/HLA Class II expression. The data shown in FIGS. 14 and illustrate that the SCPF-expanded CD34* cells consist of two morphological populations based upon size.

FIG. 14 (gated area C) shows small cells with the phenotype of CD34 CD38' and DR. The large population (FIG. 15 gated area B) is CD34 CD38"' and DR'

O

Therefore, it appears that SCPF can induce proliferation of CD34* cells in in vitro culture while maintaining their CD34' phenotype ie. the CD34* cells proliferate without differentiation. Replating efficiency of both the SCPF-expanded CD34* cells and the IL-3-expanded CDJ4' cells were tested at 8 weeks post culture (Table 3).

a. a a a a a a. a. *a.

TABLE 3 Replicating Efficiency of CD34+ Cells Responsive to Stem Cell Proliferation Factor and Human Recombinant IL-3 r-IL-3 Cellso r-GM-CSF Treatment loos Ion 1 flA CD34~' Expanded (8 wks) CD34 Expanded (8 wks) CD34 Expanded (8 wks) r-IL-3 12t SCPF 162 109 145 114 IL-6 tNumber of colonies scored.

0 101 cells/well.

S Units/mi.

The data again suggests that the cells proliferated in the presence of IL-3 are pocr in replating (usinc recombinant IL-3 and GM-CSF). On the other hand, the SCPF-treated CD34' cells had good replating efficiency in the presence of IL-3 and GM-CSF, again indicating Sthe primitive nature of the SCPF-expanded cells. SCPF does not confer any malignant phenotype on the CD34' cells since the CD34' cells died within 4-5 days after the SCPF was withdrawn.

The studies conducted on the ability of this growth factor to interact with bone marrow stem cells as a primary signal, indicate that SCPF is capable of inducing both BFU and CFU-GM colonies (FIGS. 16 and 17). SCPF does not appear to be able to induce CFU-GEMM. This factor, however, is capable of 15 enhancing the activity of a mixture of colony stimulating factors (GM-CSF, IL-3 and EPO), thereby significantly increasing the CSF activity for BFU (FIGS. 16A and CFU-GM (FIGS. 17A and and CFU-GEMM (FIGS. 18A and C) colonies.

7.2.5. INDUCTION OF CD34' CELLS INTO THE CELL CYCLE BY SCPF The following experiment analyzed the ability of SCPF and IL-3 to induce purified CD34* bone marrow cells to replicate. The results demonstrate that both SCPF and IL-3 when given alone were capable of 25 stimulating the cells to enter the cell cycle. When the two cytokines were added in combination to cultured cells, there is an additive effect on increasing the percentage of cells in the G2 phase (Table 4).

4..

44 4 4 4 4*4 .4* *4* 4 4 *4 4 4 4 4 .4 *4 4 444 4* 44 44 4 TABLE 4 Induction of CD34* Cells Into The Cell Cycle By SCPF As Measured By Flow Cytonietry And Propidium Iodine CD34+

CELLS

CELL CYCLE PHASE Gi 92.1% 1. 7t 93.6% 68.9% 81.2% 61.2% 1.0% 4.0% 3.6% 9.4% 27.1% 15.1% 29.8% 5.6% 100 U/nil of rHu-IL-3.

S 100 ng/ml. of SCPF.

7.2.6. ANTIBODY INHIBITION

TIE

The following studies examined the use of polycbona. antibodies specific for human GM-CSF, G-CSF, M-CSF, and IL-3 to neutralize the blast cell colony formation induced by SCPF in methylcellulose marrow colony assays (Table 0* S. S S S S S 55 5. S S .55 S *5 555 TABLE Colony Forming Activity of SCPF Inhibition by Specific Antibodies Cells Antibody Treatment 100 ng /ml SCPF/Blant Cell Colony Counts

BMS

N/A

BM

N/A

BM

N/A

BM

N/A

BM

N/A

anti-GM CSF anti-G CSF anti-H CSF anti-IL-3 SAM. 1 IL-3 (2Ong/ml) IL-3 (2Ong/ml) GM (2Ong/ml) GM (2Ong/ml: ALONE ALONE SC? (lO0ng/ml) SCF BM SAM. 1 24' 59 31 92

N/A

-22 63 33 86 Clonogenic assay using 1 X 104 cells.

Total colonies observed. The data shows that none of these polyclonal antibodies was capable of neutralizing the induction of blast cell colonies by SCPF whereas SAM.1 was able to neutralize their induction. However, SAM.1 antibody was unable to inhibit human stem cell factor (SCF) enhancement of GM-CSF and IL-3. This indicates that SCPF is not identical to the known CSF's and since SAM.1 antibody does not inhibit the function of SCF, SCPF appears to be functionally different to SCF.

7.2.7 TWO-DIMENSIONAL GEL ELECTROPHORESIS Chemicals. Acrylamide, N,N'methylenebisacrylamide, urea, ammonium persulfate, N,N,N,N-tetramethylethylenediamine and AG 501-X8 analytical grade mixed bed resin were purchased from Bio-Rad (Rockville Centre, NY). Pharmalyte pH 3-10 and Biolyte pH 3-10 ampholytes and molecular weight 15 standards 20,100, trypsin inhibitor, soybean; 24,000, trypsinogen; 29,000, carbonic anhydrase; 36,000, glyceraldehyde-3-phosphate dehydrogenase; 45,000, albumin, egg; 66,000, albumin, bovine; 97,400, phosphorylase B; 116,000, 6-galactosidase), were from the Sigma Chemical Co. (St. Louis, MO). The BCA S• Protein Assay Reagents were from Pierce (Rockford,IL).

All other chemicals were analytical grade and were from either Fisher Scientific or the Sigma Chemical 5 Co.

First Dimension. Isoelectric focusing gels (IEF)(O'Farrell, J. Biol. Chem., 12:4009, 1975) were made in 11 cm glass tubes with an inner diameter of 0.3 cm, which were sealed at the bottom with Parafilm.

The tube gels, which contained 4% acrylamide, 9 M urea, 2% Nonidet P-40 and 2% ampholytes, were prepared in two steps. First, the following components were mixed and gently agitated in the presence of AG 501-X8 resin (45 mg/ml mixture) for approximately 10 minutes: ml acrylamide stock solution (38% acrylamide and 2% N,N'-methylenebisacrylamide in HO) 5 0 ml 10% Nonidet P-40 in HO, 13.75 g urea and 3.75 ml H,0. The acrylamide mixture was then filtered through a glass wool plug to remove the resin.

Second, for each protein, gels were prepared by mixing 4.23 ml acrylamide mixture, 5% pH 3-10 ampholytes Pharmalytes and 50% Biolytes), an appropriate volume of solubilized protein sample and deionized water to give a total volume of 4.98 ml. After degassing for approximately 2 minutes, 5.0 gl freshly prepared ammonium persulfate and 3.5 Al N,N,N,Ntetramethylethylenediamine were added. Gels were quickly cast (0.76 ml gel mixture/tube), overlayed with deionized water and allowed to polymerize for 3 S. 15 hours. All protein samples were centrifuged for 3 5minutes at 13,000xg prior to being added to the gel mixtures.

The tubes were placed in a Bio-Rad Model 155 gel o electrophoresis cell containing 0.01 M phosphoric acid in the lower (anode) chamber and degassed 0.02 M sodium hydroxide in the upper (cathode) chamber.

Electrofocusing was carried out at room temperature for 18 hours using a constant voltage of 350 V. When electrofocusing was completed, the gels were gently 25 extruded from the glass tubes by attaching an airfilled syringe/rubber tubing assembly to the basic ends of the tubes and applying a small amount of pressure. The IEF pH gradient was determined using a surface electrode (Bio-Rad). Gels were then gently agitated in 5.0 ml equilibration buffer sodium dodecylsulfate, 5% 0-mercaptoethanol and 10% (v/v) glycerol in 0.062 M Tris-HCl, pH 6.8) for 10 minutes or were quickly frozen in an ethanol/dry ice bath and stored at -70oC until use.

Second Dimension. Samples were separated by slab SDS-PAGE on 10% gels (1.5 mm thickness, 14.5 cm length) with a 4% acrylamide stacking gel according to the method of Laemmli. The first-dimension IEF gels and molecular weight standards, which were embedded in 1% agarose in equilibration buffer, were attached to the stacking gel using 1% agarose in 0.125 M Tris-HCl, pH 6.8. Electrophoresis was carried out at room temperature (20-25C) using a constant current of 100 mA/gel until the dye had run to about 100% of the length of the gel.

Fixation and Staining. The separated proteins within the second-dimension slab gels were fixed overnight in methanol/acetic acid/water (40/10/50).

Fixed gels were stained with Coomassie blue by 15 standard techniques or silver stained according to the following modifications. Fixed gels were washed for a minimum of 1 hour in 3 changes of 20% ethanol prior to staining. Staining was done by standard methods (Merril, et al., Methods Enzymol., Q12:441, 1984).

Gels were allowed to stain for 30-45 minutes with constant gentle agitation. The stained gels were then a washed for a total of 20 minutes in two changes of oo. ethanol prior to developing the stain. Stain development was stopped by placing the gels in 25 ethanol/acetic acid/water (20/10/70). Background 25 staining was removed by placing the gels in Kodak Rapid Fixer (film strength) for 2-5 minutes. Gels were then washed for a total of 30 minutes in 3 changes of water followed by 5 minutes in Kodak hypo clearing agent to remove the fixative from the gel.

The hypo clearing agent was removed from the gels by washing for a minimum of 1 hour in 3 changes of ethanol. Finally, the stained gels were dried at room temperature by wrapping.each gel between two sheets of BioGelWrap (BioDesign, Inc., Carmel, NY).

Photography of stained gels. Direct prints of the silver-stained gels were made with Kodak Electrophoresis Duplicating Film according to the manufacturer's instructions. This film produces a permanent record of the proteins found in a gel and permits visual matching of protein patterns across several gels with the aid of a light box. In a few cases, gels were photographed using Kodak Ektapan inch sheet film and printed onto 16x20 inch Orthofilm.

The resulting prints showed the protein spots as large black dots on a clear film base. The large format of these prints was easy to examine and allowed accurate records of protein pattern differences to be noted directly on the print.

BIOASSAY FOR SCPF ACTIVITY 15 The presence or absence of SCPF in protein(s) eluted from SDS-page gels, either 1-D or 2-D, was measured in a proliferation assay using ['H]-methyl thymidine incorporation by a CD34* cell line (ML-1) (developed in our laboratory). Alternatively, 20 other CD34+ cells, such as KG-la CD34* cells (ATCC CCL 246.1), can be used in the assay to test o preparations for SCPF activity.

Briefly, 1x105 ML-1 cells were seeded into wells of a round bottom 96-well microtiter plate in a volume ""25 of 100 jl/well of Iscoves modified Dulbecco's medium .o 25 containing 10% FBS and L-glutamine. Serial two-fold dilutions of putative SCPF protein preparations were added (100 l/well) to triplicate wells. The cultures were then incubated for 48 hours at 370C in a humid atmosphere of 5% CO, in air. Following incubation, the cultures were labelled with 1 MCi of [(H]-Tdr/well for the last 16-18 hours of culture. The amount of radioisotope incorporation was quantitated by liquid scintillation counting. Tables 6 and 7 show tritiated thymidine incorporation for bioassays using KG-la and ML-1 cells, respectively. Two-fold dilutions of putative SCPF isolated from the 37kD protein from an SDS-PAGE (see section were tested and the results of tritiated thymidine incorporation showed that SCPF bioactivity was present in the preparation (compared with the control).

Using a preparation isolated from the 37 kD protein identified on SDS-PAGE, a 2-D gel was run.

After staining with Coomassie blue, multiple isoforms of SCPF were identified on the 2-D gel The gel was divided into sections and 8 slices containing protein were removed. Proteins were eluted from the 8 slices as described in 7.1.2. above. Bioassays were performed on the eluted proteins from each slice.

Incorporation of tritiated thymidine correlated with protein preparations made from the isoforms found in slice #4 (Table 8, data is shown in CPM). SCPF 15 isoforms identified in slice #4 represent proteins in the pH 7.0 to 8.0 range, as determined by surface electrode analysis. The bioactivity in this fraction demonstrated the classic dilution effect as seen by ~two-fold dilution of cytokines in bioassay.

The bioactivity data identified in Table 8 was further verified by western blot analysis using the SAM.1 antibody. Two-dimensional gels run as described above (pH gradient gels and subsequent molecular weight gels) were blotted onto nitrocellulose or PVDF "25 filters and hybridized using standard hybridization 25 techniques using SAM.1 as a primary antibody and Alkaline Phosphatase-conjugated Goat anti-Rabbit IgG (H L) as the secondary antibody (BioRad). The data revealed that the antibody strongly reacts with protein in the pH range of 7.0-8.0, consistent with the region which exhibited SCPF bioactivity.

SCPF can be further purified to homogeneity from discrete spots on a 2-D gel by standard immunoaffinity techniques using SAM.1 or other SCPF-specific 3 antibodies (Current Protocols in Immunology, Chapter 8, Coligen, et al., eds., 1992). SCPF is eluted from the immunoaffinity matrix and then subject to isoelectricfocusing, as described above, but in a narrower pH range of pH 6-8, preferably. The protein separated in the gel can then be screened for SCPF in the bioassay described above.

C

Gee C C

CC

eq Ge.

C

9 Ge Ge

C

e

C

G.e Gee 9*G

C

Ge 9 e Ge

C

C Gee e e C C C Ge..

eG eG C G C eG e e e. G.e e e e C C Ge *Ge *e e TABLE 6 BCPF BIOASSAY KG-la CELLS pg/mi BCPF (37kDa prep) Mean of Three Samples 1 CPM 120,196 36,890 0.5 118, 351 13,105 0.016 40,874 308 0.250 73,472 13,060 0.008 40,586 3,350 0.125 41,700 7,733 0.004 40,530 3,175 0.063 39,748 1,281

CPM

S.D.(1- 0.031 39,052 5,019 0. 002 41,852 2,392 Cointro l 44,884 7 ,499 4.* *9 a a a a a a a a S *5 ac S. a a a. a. TABLE 7 BCPF BIOABSY ML-l CELLS pg/al SCPF (37kDa prep) Mean of Three Samples 1 115, 151

CPM

S.D. 7,737 0.5 99,383 7,332 0,016 53, 180 0.250 90,586 2,702 0,008~ 50, 606 0.125 89,309 4,593 0.004 54, 161 0.063 49,462 1, 659 54 ,680

CPM

0.002 53,432 Con t rol 48,020 5,099 10? 1,101 1,799 1,076 4,120

S

C

S S

S

S. CS 9

CCC

C 5* C C

C

SC

S

S.C C 5 9 C C 5S** C 5 C C *C **C C C C S 5* *CC SC

S

TABLE 8 GEL FRACTIONB -_BCPF BIOABSAY ML-1 CELL LINE Dilutions of Recovered Protein Mean of Three Samples

CPM

Siice/1-CPM Si ice/2-CPM Si ice#3-CPM Slice/4-CPM Slicel6-CPM Slice17-CPM Silice18-CPM 1:3 4115 6853 229 13454 0 1302 0 5209 1:6 1501 3568 4358 9386 884 0 0 0 1: 12 6177 5837 3427 8631 6936 3251 0 0 1:24 4891 5216 4310 8214 0 1817 0 1209 1: 48 5934 5306 3625 8722 0 948 2606 0 1:96 4191 5976 5012 1600 0 636 4480 4650 1:192 4377 5493 1313 0 2353 Cantrol' 0 3587 2162 a control mean CPM 48,020 ?4,120

S.D.

66 7.2.9 ASSAY FOR SYNERGY WITH OTHER GROWTH

FACTORS

ML-1 CD34* cells were immunoselected from bone marrow isolated from human cadaveric vertebral bodies.

Immunoselected CD34* cells were stained with CD34-PE, CD38-FITC and Cr-PerCP prior to and subsequent to exposure to cytokines. CD34* cells 2x10 5 were cultured in 1.0 ml Dulbecco's medium plus or minus various cytokines alone or in combination (see Tables 9 and Cells were counted prior to culture and again after 6 days of culture. Cells were then stained with the SCPF antibody, SAM.1, and subjected to FACS analysis. CD34* cells were gated in list mode according to side scatter and PE fluorescence. Two distinct size populations of the CD34* cells, large and small, were identified based upon forward light 15 scatter. These cells were analyzed for CD38 and Dr expression. The data is given for the large and small CD34 cell population in Tables 9 and respectively. These results show that SCPF and IL-3, when given alone, were capable of 20 stimulating cells to enter the cell cycle. The combination of SCPF IL-3 has an additive and possibly synergistic effect in increasing the total number of large CD34* cells, as well as small CD34* cells.

:70.

a.

9 a a a 9 a a a a CY(okines Pre-culture Large CD34' 8,662 Tual No.

CCOW/~l Media 5,814 3,132 10.623 8,575 8.747 8,927 9.482 8,230 11,684 IL-3 IL-6 IL-3+SCF IL-3+SCPF IL-6 +SCF 2 .0 x 10 6.5 x 10' I.5 x 10, 2.6 x 10' 1.6 X 101 5.3 x 10' 4.3 x 10' 9.8 x 10' 8.3 x 10' 5.6 x 10' 1.5 x 1(' 8.0 x 10' 1.9 x 10 40,660 92,066 45.733 154,530 127,954 309,745 227.697 218.101 436,050 231,547 533.963 1,134 1,45 (17.9) 7.278 471 4,143 1,634 (19.1) 8,739 504 (5.8) 8,963 579 8,317 194 6.195 529 (6.4) 14,573 105 (0.9) 1.963 106 (1.2) 5.233 484 (5.6) 12,967 143 (1.7) 9,077 TABLE 9 CD34 LARGE CELLS 311 Dr Total Large (s) CD34* Cey 12al IL TOL 57,480 41 (9.3) 5.663 12,597 521 3R'Dr' 38 Dr (11) 1.651 (19.1) 10.979 3.076 (52.9) 6,664 4,177 (51.4) 20,399 4,640 (43.7) 40.233 4.270 (49.8) 22.775 4.344 (55.4) 15,610 5,143 (57.6) 73.701 3,643 (38.4) 118,942 4,510 (54.8) 124,773 4,481 (38.4) 33.751 3.223 (37.0) 161.338 4,900 (56.4) 130,592 3.226 (38.3) 204503 JA'Dr 3,352 (33.9) 22,360 1,164 (20.0) 2,19 1,602 (19.7) 8,010 1,285 (12.1) 11,140 1,397 (16.3) 7.454 719 (8.2) 12,671 742 (8.3) 10.620 1,723 (18.2) 56,374 679 (8.3) 11,899 1,471 (12.6) 217,481 1,479 (17.0) 74,123 705 (3.1) 18,755 1,172 (13.9) 74.221 2,773 (32.2) 18,503 1,053 (18.1) 2.280 898 (11.0) 4,472 4,220 (39.7) 36,550 1.274 (14.9) 6.114 2,630 (30.6) 47.286 2,463 (27.6) 35,.315 3,922 (41.4) 123,234 2,512 (30.5) 69.448 5,627 (48.2) 105,125 3,903 (44.1) 195,350 2,594 (29.9) 69,232 3,890 (46.1) 246.157 IL-3 1L-6 SCF IL-3 IL-6 SCPF IL-3 L-6 SCR SCPF 8,721 8,683 8,431 100 snmI rHu-IL-3; 100 nglml SCPF; 100 nglml SCF; 100 W/ml rHu-IL-6 0*

S

S. S S S S S. *5 5 5 *55 S S *5 0* S S* Pt -culture 4mall CI)34 15.149 Toal No.

2.0 x I(Y TABLE 10 CD34 SALL CELLS Total Smnal CD341 CtIs TOW pjmrAL J 100,993 10.604 13,195 1.301 (21.5) 2.37 13.190 371 3I)r 311)r' 39 Dr- Media 6.090 2.638 1.227 1.616

SCPF

IL-3+IL-6 IL-3 SCF IL-3 SCPF IL-6+SCF 6.5 x I0l 1.5 x 10, 2.6 x 101 1.6 X 10' 5.3 x W0' 4.3 x 101 9.3 x 10' 3.3 x 10' 5.6 x 10' 1.5 x 10' 1.0x 10' I.9 x 10' 1.197 1,335 1,555 1.022 10.634 8,619 16.695 10.908 39.102 30.101 24,920 77,750 27.253 (21.6) 2.949 116 1.010 331 (23.6) 2.034 136 (14.4) 2.404 (11.2) 1.222 19 (1.6) 626 94 (1.6) 2,539 31 (2.3) 573 20 (1.3) 1.011 94 (9.2) 2.507 22 (3.2) 1.392 2,11 (13.6) 18.73 2.141 (35.2) 4,645 693 (26.5) 3,495 333 (27.1) 2.132 307 (19.0) 1,638 147 (15.6) 2.604 146 (19.2) 2.094 221 (19.0) 7,429 256 (23.5) 7,074 258 (19.3) 4.309 320 (20.6) 16,016 177 (17.3) 4,715 190 (27.7) 12,052 6,512 (43.0) 43.426 2.063 (33.9) 4.473 1.037 (39.3) 5,134 45 (37.1) 3.945 757 (46.8) 4,034 407 (43.1) 7.196 377 (49.5) 5.399 360 (30.1) 11.770 404 (37.1) 11.167 450 (33.7) 3.398 373 (24.0) 18.660 463 (43.3) 12.346 283 (41.2) 17,296 4.233 (27.9) 23.177 373 1.254 332 (12.6) 1.662 323 (26.3) 2.797 171 (10.6) 913 255 (27.0) 4,503 153 (20.1) 2.192 590 (49.3) 19,277 334 (30.7) 9,241 596 (44.6) 11,114 842 (54.1) 42.063 283 (28.2) 7.685 192 (27.9) 12,139 IL.3 IL6 SCF IL-3+IL-6+SCPF ILJ +IL.6+

SCR*SCPF

43.510 100 j/mJ rHu-IL-3; 100 ng/nl SCPF; 100 ns/mi SCF; 100 pI rHu-IL-6 69 7.2.10. PARTIAL AMINO ACID SEQUENCE Crude SCPF protein, prepared as described above in section was analyzed and purified by HPLC chromatography (Waters, Novapak-C18) equilibrated in 0.1% TFA, pH 1.9 and eluted with a linear gradient of 0-20% acetonitrile in 0.1% TFA, pH 1.9 for 10 minutes followed by elution with 20%-60% acetonitrile in 0.1% TFA, pH 1.9 for one hour. Fractions were collected and small alloquts of each further purified by SDS PAGE. The band was cut out of the SDS gel and digested with an endopeptidase. The resulting fragments were fractionated on a reverse phase C8 column (Waters). The peptide was then sequenced using an automated amino acid sequencer (Hunkapeller, et al., in "Methods of Protein Microcharacterization, Gas-Phase Protein/Peptide Sequencer," D. E. Shirley, E. D. Clifton, N. J.

Humanipress, pp. 223-247, 1986). The partial amino acid sequence for the SCPF was determined to be KDRGPAGAL (Lys Asp Arg Gly Pro Ala Gly Ala Leu). The purified fragment showed a single peak representing 96.46% of peak area on a C8 Vydacrpc-8 column eluted with 10-90% acetonitrile over a period of minutes at 5 ml per minute. The peptide was stable under 0:,4 storage conditions of 4 0 C or long-term storage at 20 0

C.

8. DEPOSITS OF CELL LINE The 751 cell line which produces SCPF has been deposited .25 with the American Type Culture Collection Rockville, MD, United States of America. Details of deposits follow.

Cell Line Accession No. Date of Deposit 751-NA- Passage 15 CRL 10992 19 March 1992 751- NA-15 CRL-12160 30 July 1996 The present invention is not to be limited in scope by the ~specific embodiment described which are intended as single 30 illustrations of individual aspects of the invention, and any cell lines, DNA constructs or factors which are functionally equivalent are within the scope of this invention. Indeed, various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and the accompanying drawings. Such modifications are intended to fall within the //scope of the appended claims.

Such modifications are intended to fall within the scope of the appended claims.

n.e

C*

C

C. C C

Claims (24)

1. An isolated stem cell proliferation factor produced by cell line 751-NA-15 having ATCC accession No. CRL 10992 comprising a polypeptide having the following properties: stimulation of proliferation of human bone marrow stem cells; stimulation of proliferation of human bone marrow stem cells in the presence of antibodies that bind and neutralize IL-3, GM-CSF, G-CSF or M-CSF; and being a polypeptide selected from: i) a soluble polypeptide having a molecular weight of 31 kilodaltons as determined by SDS- polyacrylamide gel electrophoresis; or ii) a polypeptide containing a trans-membrane domain and having a molecular weight of 37 kilodaltons as determined by SDS-polacrylamide gel electrophoresis.

2. The stem cell proliferation factor of claim 1 or claim S 2 in which the human bone marrow stem cells express CD34. S

3. The stem cell proliferation factor of claim 1 or claim 2 wherein said polypeptide has the following partial amino acid .*25 sequence: KDRGPAGAL.

4. An antibody produced in response to challenge by the stem cell proliferation factor of any one of claims 1 to 3 and 30 which immuno-specifically binds to said stem cell proliferation factor.

5. The antibody of claim 4 which is a monoclonal antibody.

6. A method for producing the stem cell proliferation factor of any one of claims 1 to 3, said method comprising: culturing a cell that contains a nucleotide sequence encoding the stem cell proliferation factor of any one of claims 1 to 3 under the operational control of a regulatory nucleotide sequence that directs gene expression so that biologically active stem cell proliferation factor is expressed by the cultured cell; and recovering biologically active stem cell proliferation factor from the culture.

7. A method for stimulating the proliferation of human bone marrow stem cells comprising contacting the bone marrow cells with the stem cell proliferation factor of any one of claims 1 to 3.

8. The method of claim 7 in which the bone marrow stem cells are CD34'.

9. The method of claim 7 or claim 8 which is practiced in culture.

10. The method of claim 7 or claim 8 which is practiced in 0:60 vivo. Poe:

11. The method of any one of claims 7 to 10 wherein the bone marrow cells are further contacted with a cytokine.

12. The method of claim 11, wherein the cytokine is selected from IL-3, IL-6 or SCF.

13. A method for inhibiting the proliferation of tumor 0: 30 cells that are stimulated by the stem cell proliferation factor of any one of claims 1 to 3 comprising contacting the tumor cells with an antibody or an antibody fragment that binds to and neutralizes the stem cell proliferation factor.

14. The method of claim 13 which is practiced in culture.

The method of claim 13 which is practiced in vivo. 73

16. A method for detecting a disorder associated with a stem cell proliferation factor in a subject comprising contacting a specimen of the subject suspected of having the stem cell proliferation factor-associated disorder with an antibody of claim 4 of claim 5 and detecting binding of the antibody.

17. The method of claim 16, wherein the disorder is selected from leukemia, aplastic anemia, neuronal disorder, severe combined immunodeficiency, or hypersplenism.

18. The method of claim 16 or claim 17 wherein the detecting is in vivo.

19. The method of claim 16 or claim 17 wherein the detecting is in vitro.

The method of any one of claims 16 to 19 wherein the antibody is detectably labeled.

21. The method of claim 20 wherein the detectable label is 9** selected from a radioisotope, a fluorescent compound, a .5 bioluminescent compound, a chemiluminescent compound or an enzyme.

22. A germ cell tumor line having ATCC accession number CRL 10992. .o* 4*94

23. An isolated stem cell proliferation factor 30 substantially as hereinbefore described with reference to Example 7. *4e

24. A germ cell tumor line substantially as hereinbefore described with reference to Example 6. Dated this 1 4 th day of October 1999 UNIVERSITY OF FLORIDA RESEARCH FOUNDATION INCORPORATED By their Patent Attorneys A f7 CULLEN CO.