AU708250B2 - Regeneration and transformation of cotton - Google Patents

Description

PATENT

P114:175op REGENERATION AND TRANSFORMATION OF COTTON BACKGROUND OF THE INVENTION This invention is directed to plant regeneration and transformation of cotton, particularly cotton of the.

species GossvyiUm hirsutum L.

In recent years many tissues of diverse origin from plants belonging to different taxonomic groups have been established as Invitrotssue culture. Some of the factors controlling growth and differentiation of such cultures 20 have also been determined. The establishment of subtle interactions among the different groups of plant hormones, and plant growth regulators operating either directly or indirectly, alone or in synergistic combination, have given to some degree an insight into certain e.

25 interrelationships that may exist among cells, tissues and organs. The information is however by no means complete.

For some time it has been known that plant cell cultures can be maintained in a nondifferentiating proliferative state indefinitely. It has, however, only been recently found that redifferentiation of tissues, organs or whole plant organisms can be experimentally induced. Since the demonstrations by Skoog et al "Chemical regulation of growth and organ formation in plant tissues cultured I vitro," Svm2. SOc. EXD. Biol. 12:18-130, -2- 1 1958, incorporated herein by reference, that the relative ratio of a cytokinin to an auxin determines the nature of organogenesis in tobacco pith tissue. Reorganization or regeneration from callus cultures includes the formation of shoot primordia or embryos, both of which ultimately lead to plantlet development n vitro.

The tendency for organogenesis vs. embryogenesis still depends upon the species involved and the presence of certain triggering factors which are chemical and/or physical in nature.

In 1902, Haberlandt "Kulturversuche mit isolierten pflanzenzellen," Ma*. KI. AJ1A, Akd, Eiss. Jaen 111:62, incorporated herein by reference, postulated that plant cells possessed the ability to produce entire plants and predicted that this would someday be demonstrable in cell cultures. In 1965, Reinert "Untersuchungen uber die morphogenese an Gewebekulturen," Be. it. Bot. ies.

71:15, and Steward et al, "Growth and organized development of cultured cells/II. Organization in cultures grown 20 from freely suspended cells," Am. Bot. 45:705-708, working independently, confirmed the occurrence of In vitro somatic embryogenesis. Both references are incorporated herein by reference. In experimentally manipulating somatic embryogenesis it is believed that two components of the culture media, an auxin and the nitrogen source, play crucial roles.

It has also been shown that the process of somatic embryogenesis takes place in two stages: first, the induction of cells with .embryogenic competence in the 30 presence of a high concentration of auxin; and second, the development of embryonic cell masses into embryos in the absence of or at a low concentration of auxin.

The induction of organogenesis or embryogenesis leads to distinct structural patterns in the callus.

Detailed study of several plant species has enabled -3- 1 certain generalizations to be made about the developmental pathways leading to shoot, bud or embryo development.

The application of tissue culture techniques to the regeneration of plants via organogenesis or embryogenesis remains perhaps the most important contribution of basic studies in morphogenesis to commercial application.

Beasley reported the formation of callus in ovule cultures of cotton in 1971, vitro culture of fertilized cotton ovules," Bioscen-cF 21:906:907, 1971,. incorporated herein by reference. Later, Hsu et al "Callus induction by (2-chlorethyl) phosphonic (CPA) acid in cultured cotton ovules," Phsiol. Plant 36:150-153', 1976, incorporated herein by reference, observed a stimulation of growth of calli obtained from ovules due to the addition of CPA and gibberellic acid to the medium.

Callus cultures from other explants such as leaf Davis et al., "In vto culture of callus tissues and cell suspensions from okra (HibisQU )sculentu) and cotton (2lypijR hi rwjni), In vitro 9:395-398, 1974, 20 both incorporated herein by reference; hypocotyl Schenk et al. "Medium and technique for induction and growth of monocotyledonous and dicotyledonous plant cell cultures," Can. o. 50:199-204, 1972, incorporated herein by reference; and cotyledons Rani et al.

25 "Establishment of Tissue Cultures of Cotton," Plant Sc.

Le t. 7:163-169, 1976, incorporated herein by reference) have been established for S Yp hJrAU and 2.

arboreum.

4 Katterman et al, "The influence of a strong reducing agent upon initiation of callus from the germinating seedlings of gosypu barbadense," Phsol. Plant 40:98- 101, 1977, incorporated herein by reference, observed that the compact callus from cotyledons of 2. barbadense formed roots, and in one instance regeneration of a complete plant was also obtained. Smith et al "Defined -4- 1 conditions for the initiation and growth of cotton callus in vitro, 2 1n.±mn Arboreum, In vitro 13:329-334, 1977, incorporated herein by reference, determined conditions for initiation and subculture of hypocotylderived callus of f. A. Subsequently, Price et al "Callus cultures of six species of cotton 22jypJU L) on defined media," £1 Scj. JLtt. 8:115-119, 1977, and "Tissue culture of 9QE2pi= species and its potential in cotton genetics and crop improvement," elide Cton Pxroeiaion .lsmzrb Conference Z pp. 51-55, 1977, of the National Cotton Council, Memphis, each incorporated herein by reference, defined conditions for the initiation and subculture of callus from five species of 2.

One of the common problems in establishing cultures of many plant species is the "browning" of the explant in the culture medium. In cotton, this leaching of polyphenols was overcome by replacing sucrose with glucose, and by transferring the cultures to a fresh medium every days. After 3 or 4 passages on glucose supplemented medium, the browning completely disappeared and the cultures could be transferred back to sucrose-supplemented media. Although difficulties with the induction, browning and maintenance of calli during subcultures have been overcome with certain Q species, all attempts to regenerate plants from callus cultures have been either unsuccessful or have involved several timeconsuming steps. Davidonis and Hamilton "Plant Regeneration from Callus Tissue of GossyDium hirsutum." L. P Scg. Lt. 32:89-93, 1983, incorporated herein by reference, reported the eventual formation of embryos two years after the initiation of culture.

SAlthough many growth substances, such as natural :phytohormones and synthetic growth regulating compounds have been utilized in tissue culture media to bring about plant regeneration in vt, no generalization, much less specifics, of the effects of different substances on plant regeneration has been arrived at. Indeed, the same substances, when applied to different plant species, may either inhibit growth, enhance growth, or have no effect whatsoever. Therefore, aside from certain standard procedures, it remains necessarily a difficult task to arrive at a working protocol for plant regeneration for any new species and by many orders of magnitude a more difficult task to achieve plant transformation.

The present invention provides a method for the rapid regeneration of cotton plants from segments exercised from seedlings. The method described offers a high degree of repeatability and reliability and it enables genetic transformation of cotton plants.

Summary of the Invention A method for transforming cotton which includes the steps of a) providing a cotton explant; b) culturing the cotton explant in a first solid 20 callus growth medium containing glucose as a carbon source from a period of time sufficient for phenolic secretion from the explant forming the callus to end and for undifferentiated callus to develop from the explant; c) transferring the callus at the end of phenolic secretions to a second solid callus growth medium *containing sucrose as the carbon source; d) culturing the callus in the second solid callus growth medium from a period of item sufficient to allow evelopment of embryogenetic callus providing at least one embryo; e) transferring the embryo to a plant germination medium; wherein the transformation involves exposing the explant during regeneration to an Agrobacterium vector containing an expressible gene sequence foreign to cotton for a time sufficient for the gene to transfer to the plant cells.

The present invention also provides a vector for conferring antibiotic resistance to a cotton plant which comprises two T-DNA right border sequences from A.

Tumefaciens capable of integration with the plant genome flanking a chimeric gene capable of expression in cotton and of conferring resistance to the antibiotics Kanamycin and G418.

The present invention also provides a vector for transforming cotton comprising: integration sequences for integrating into the genome of cotton plants; a cotton plant expressible promoter for promoting transcription in cotton plants; a DNA border sequence encoding a selectable marker wherein the selectable marker is a herbicide resistance gene; and a cotton plant expressible termination signal for 20 terminating transcription in cotton plants.

Seed is sterilised and grown in the dark to a seedling. The seedling is one source of an explant, usually the hypocotyl and the cotyledon. Another source are immature zygotic embryos of developing fruit. The explant is subdivided and cultured in a first callus growth medium (containing glucose) for a period of time to allow a callus to develop from the explant on a culture medium which copes with phenolic secretions and stimulates cells of the explant to divide and proliferate. The callus, after passing through the phenolic secretion stage, is transferred to a fresh callus growth medium (containing sucrose) which develops the callus to an embryogenetic callus. The embryo may then be subcultured to produce more embryogenetic callus or transferred to another growth medium (plant germination medium) and cultured for a period of time sufficient to develop a -6- 1 plantlet which after another period of growth is transferred to a greenhouse, then into the field and grown to a mature plant from which seeds can be harvested.

The embryos may also be cultured in suspension. In this procedure, after the period of growth, the embryo containing embryogenic clumps greater than about 600 microns, preferably greater than about 800 microns in size are isolated and utilized for plant production.

Smaller callus are recycled to the callus growth medium for growth to plant forming callus or maintained as an embryos source.

Transformation may occur at the explant, callus or suspension development stage. Transformation involves exposing the explant, callus and/or embryogenic callus to the action of an Agrobacterium vector containing an expressible gene sequence foreign to cotton for a time sufficient for the gene to transfer into the cells. The residual Agrobacterium is then killed off with an antibiotic which is toxic to the Agrobacterium. This is followed by selection of the transformed cells and/or embryogenic callus for development into transformed plantlets. In suspension culture, transformation and/or selection can occur prior to or following separation of embryogenic callus from cells and callus too immature to be embrydgenic.

Plants of unique phenotypic traits are obtainable, and there is provided new cotton plants which having resistance to antibotics normally inhibitory to plant cell growth; cotton plants which have increased resistance or tolerance to herbicides, fungal pathogens and cotton plants which exhibit better yield and improved fiber quality.

-7- 1 Brief DescriDtion of the Drawings FIG. I presents diagramatically preferred procedures for development of cotton plants from seed by tissue culture techniques with a showing of establishing zones of transformation.

FIG. 2 is a photo illustration of embryogenic callus of cotton with somatic embryos (12) at various stages of development including leaf (14) and root (16).

FIG. 3 is a photo illustration of a somatic cotton' embryo at a late globular stage isolated to form the embryogenic callus culture as depicted in FIG. 2.

FIG. 4, as with reference to FIG. 2, is a photo illustration of embryos and young plantlets (18) of cotton developing on an embryo germination medium.

FIG. 5 is a photo illustration of small clumps of embryogenic cells from suspension cultures of cotton.

FIG. 6 is a photo illustration of a globular stage .g embryo from a suspension culture.

FIG. 7 illustrates germinating embryos obtained .e 20 from suspension cultures showing emerging leaves (14) and roots (16).

FIG. 8 illustrates the development of plantlets of cotton growing on the embryo germination medium.

FIGS. 9 to 15 depict the genetic transformation of 25 cotton, with FG. 9 showing the development of cell colonies (20) from transformed cotton cells containing a gene for kanamycin resistance.

FI

G

10 shows somatic embryos developing from the selected antibiotic resistance cells of FIG. 9 on anp antibiotic-supplemented medium.

FIG. 11 shows germinating embryos of transformed somatic embryos containing a gene confering resistance to the herbicide glyphosate.

FIG. 12 shows cotton plantlets developed from the embryos of FIG. 11.

-8- 1 FIG. 13 shows germinating somatic embryos transformed to confer resistance to Lepidopterous insects with leaf 14 and root 16 development.

FIG. 14 shows plantlets developed from the embryos of FIG. 13.

FIG. 15 shows a plantlet of the variety Siokra developed from transformed embryos exhibiting a resistance to kanamycin.

FIG. 16 shows the construction of mp 19/bt, a plasmid containing the 5' end of the Bt protoxin gene.

FIG. 17 shows the construction of mp 19/bt ca/del, a plasmid containing the CaMV gene VI promotor fused to the 5' end of Bt protoxin coding sequence.

FIG. 18 shows the construction of p702/bt, a plasmid having the 3' coding region of the protoxin fused to the CaMV transcription termination signals.

FIG. 19 shows the construction of pBR322/bt 14, containing the complete protoxin coding sequence flanked by CaMV promotor and terminator sequences.

20 FIG. 20 shows the construction of pRK252/Tn903/BglII.

FIG. 21 shows the construction of PCIB FIGS. 22 23 shows the construction of pCIB 4.

FIG. 24 shows the construction of pCIB 2.

FIG. 25 shows the construction of pCIB 10, a broad host range plasmid containing T-DNA borders and gene for plant selection.

FIG. 26 shows the construction of pCIB10/19Sbt.

FIG. 27 shows the construction of pCIB 710.

o: FIG. 28 shows the construction of pCIB10/710.

30 FIG. 29 shows the construction of pCIB10/35Sbt.

FIG. 30 shows the construction of pCIB10//35Sbt(KpnI).

FIG. 31 shows the construction of pCIB10/35Sbt(Bcll).

FIG. 32 shows the construction of pCIB10/35Sbt(607) 07/06 '99 15:29 FAX 61 3 9663 3099 FB RICE &CO. -*PATENT MATTERS 200o5 FIG. 33 depicts thie plasmid prom 1 containing a T-DNA right border sequence (rb) and a nopaline synthase, gene (nos) from the wild-type A.tumofacis strain C58, was digested with Hind Mi and Sal 1 The fragment containing the right border sequence was cloned into pBR322 to generate pProm 2. and this construction was digested with Cia 1 Plaswid pCon 1, containing a marker gene (nosfnpt II) that allows selection of plant transformants on medium containing kanamycin, was digested with Hind M11(4) and the restriction fragments generated from pCou 1 and pPromn 1 were treated with DNA polymerase I (Kienow fragment) and "blunt-end" ligated to obtain pbomcon 1 The last cloning steps (6 and 7) involved the Eco RI digestion and ligation of promcon I and pRK29O. The plaswid pRK29O contains a wide host replicon requied for replication in A. tumefaciens. The final binary vector construction (DEl) contains a unique Hind IM cloning suit and the selectable 0* marker gene between two T-DNA right border sequences. Restri tion sites. H 15 Hind III; S, Sal I; E, Eco RI; C, Cia 1; Co, Cla I (Kienow filled).

FIG. 34 is a photo showing a field trial made up of cotton regenerants planted in a Verlicilu infested field.

FIG, 35 is a photo showing progeny of a regenerated SJ4 plant in the field trial show in FIG, 33. A somaclonal variant with improved tolerance to Verticillium fungus is indicated by the snrow.

07/0 %J1 7/06'99 MON 15:25 [TX/RX NO 8099] Q~005 Detailed Descriition The present -invention is directed to the regeneration by tissue culture of cotton plants particularly plants of the genus Gossypium hirsutu from somatic cells for propagation in the field. Optionally, the cells may be transformed to include foreign genetic information.

The various growth medium useful in accordance with this invention are as follows: SEED GERMINATION GROWTH MEDIUM COMPOSITION OF MODIFIED WHITE'S STOCK SOLUTION (Phytomorphology 11:109-127, 1961 incorporated herein by reference) Concentration per 1000 ml.

ft.

S

S.

S

*4 S Component MgSO 4 .7 H 2 0 Na 2

SO

4 NaH 2

PO

4

.H

2 0 3.6 2.0 1.65 Ca(N0 3 2 .4 H 2 0

KNO

3 KCl 2.6 800 650 Dissolve and make up the final volume to 1000 ml. Label White's A Stock. Use 100 ml/l of final medium.

Dissolve and make up the final volume to 1000 ml. Label White's B Stock. Use 100 ml/1 of final medium.

Dissolve and make up the final volume to 100 ml. Label White's C Stock. Use 1.0 ml/1 of final medium.

Use 10 ml/l of MSFe

EDTA.

Use 10 ml/l of MS organic.

Na 2 MoO 4 .2H 2 0 COC12.6H 2 0 MnSO4.H 2 0 ZnSO 4 .7 H 2 0.

30 CUS04.5 H 2 0

H

3

BO

3 Fe EDTA Organic 2.5 2.5 300 50 2.5 -11- CALLUS GROWTH/MAINTENANCE

MEDIUM

COMPOSITION OF MURASHIGE SKOOG

(MS)

STOCK

SOLUTIONS

(Physiol. Plant 15:473-497, 1962 incorporated herein by reference) Concentration per 1000 ml.

-of Stock Comments

NH

4

NO

3

KNO

3 CaCl 2 .2 H 2 0 MgSO 4 .7 H 2 0 KH2PO 4

KI

H

3 BO3 MnSO 4

H

2 0 ZnSo 4 .7

H

2 0 Na 2 MoO 4 .2

H

2 0

CUSO

4 .5 H 2 0 CoC1 2 .6 H 2 0 41.26 47.50 11.00 9.25 4.25 Dissolve and make up the final volume to 1000 ml. Use 40 ml/i of final medium.

Dissolve and make up the final volume to 1000 ml. Label HS Kingr. Use 10 ml/1 of final medium.

4 *4 4 4. 4 83 620 1690 860 25 2.5 Nicotinic acid Pyridoxin HC1 Thiamine HC1 mg Dissolve and make up mg the final volume to mg 1000 ml. Label MS Organic. Freeze in ml aliquots. Use ml/1 of final medium.

44*.

-12- Fe EDTA Fe S04.7H 2 0 Na 2 EDTA.2

H

2 0 2.78 g 3.73 g Dissolve 2.78 g of FeSO 4 j7,H 2 0 in aboxit 200 ml of deionized water. Dissolve 3.73 g of Na 2 EDTA.2 H120 (disodium salt of ethylenediainotetraacetic acid dihydrate) in 200 =l of deionized water in another beaker.

Heat the Na 2

EDTA

solution on a hot Plate for about Io minutes. while constantly stirring, add FeSO 4 solution to Na 2 EDTA solution.

Cool the solution to room temperature and make up the volume to 1000 ml. Label IM ZM&. Cover bottle with foil and store in refrigerator. Use ml/l of final medium.

Dissolve and make up the volume to 500 ml..

LabelMs-hlaie Use 4.0 ml/l of final medium.

As if required.

Thiamine Hcl 50 Ing Inositol Glycine 10 g 0.2 g Dissolve and make up the final volume to 1000 ml. Label MS glvcine/inositol Use ml/l of final medium.

-13- PLANT GERMINATION MEDIUM COMPOSITION OF BEASLEY AND TING'S STOCK SOLUTIOWC (Am. J. Bot. 60:130-139, 1973 incorporated herein by reference) tration per1000 Componentfl

H

3 B0 3 Na 2 MoO4.2 H 2 0 2.72 61.83 2.42 CaCl 2 .2 H 2 0

KI

CoCl 2 .6 H20 MgSO 4 .7 H 2 0 MnSO 4

.H

2 0 ZnS0 4 .7 H 2 0

CUSO

4 .5 H 2 0 10N03 4.41 8.3 0.24 4.93 169.02 86.27 0.25 25.275 g Dissolve and make up the volume to 100 ml.

Label B&T A Stock.

Use 10 mi/i of final medium.

Dissolve and make up the volume to 100 ml.

Label B&T B Stock.

Use 10 m/l of final medium.

Dissolve and make up the volume to 100 ml.

Label B&T C Stock.

Use 10 mi/i of final medium.

Dissolve and make up the volume to 200 ml.

Label B&T D Stock.

Use 40 ml/l of final medium.

Dissolve and make up the final volume to 100 ml. Label E& Qrais Use 10 ml/l of final medium.

use 10 ml/1 of Ms Fe

EDTA.

100 mg/l of final medium.

1200.6 mg/i of final medium.

Nicotinic acid Pyridoxin HCL Thiamine HCL 4.92 8.22 13.49 Fe EDTA Inositol

NH

4

NO

3 (15 UM) -14- 1 With any of the above solutions, the following, procedure is used to prepare one liter of the medium.

There is provided as a base, 200 ml of deionized water and the various stock solutions are added in the amounts stated for 1 liter. For example, if there is to be employed 10 ml of a stock in the final medium, then ml of the stock are added to the 200 ml of the distilled water. To ensure the salts stay in solution, stock solutions are normally added in the order shown in the formulations above. After thoroughly mixing additional deionized water is added to the mixture to bring it to, as required 500 ml, and the mixture adjusted in pH to a value of from about 5.8 to 6.0. The final volume is brought to 1,000 ml and there is normally added tissue culture Agar, or its equivalent to a level of about 0.8% by weight. This is to provide some solidity to solution to reduce flow. The mixture is then autoclaved for about to 20 minutes at a pressure 15-21 lbs/in 2 to kill any contaminating organism, and suitably labeled and stored 20 as a sterile medium.

Briefly, cotton seeds are sterilized and germinated on a suitable seed germination medium such as a basal agar medium in the dark for a time sufficient to produce seedlings. The normal period of growth is up to about 4 25 weeks, typically 7 to 14 days.

Segments of explants are excised from the seedling.

It is preferred that the explant come from the hypocotyl or cotyledon. In the alternative, one can equally use ^immature embryos obtained from the developing fruits of 30 greenhouse or field grown cotton plants as the explant.

The explant segments are cultured on a suitable first callus growth medium, preferably a or full Murashige and Skoog (MS) nutrient medium containing glucose. Growth occurs by culturing at a temperature of from about 25 to about 35*C in a light/dark cycle of about 16 hours of 1 light and above 8 hours of dark. Culturing is the procedure whereby the medium is replaced at periodic intervals as the nutrients are consumed and continued for approximately about 3 to about 4 weeks, or until undifferentiated callus are formed. The callus are transferred to a second callus growth medium, preferably an MS medium supplemented with naphthaleneacetic acid (NAA) and sucrose as the carbon source and cultured for three to four months to produce embryos.

The embryos may then be maintained in the second callus growth medium to maintain an embryo supply or transferred to a plant germination medium such as Beasley and Ting's medium preferably containing casein hydrolysate and source of ammonuim cultured for 2 to 3 weeks to 15 produce plantlets.

The plantlets are transferred to soil under high humidity conditions, then transplanted to larger pots in a greenhouse and finally transferred to the field for growth to maturity.

20 The methods briefly described herein have been successfully employed to induce somatic embryo formation in cotton of the species jGossyluM hirsutum by tissue and suspension cultures and, ultimately, to obtain mature plants from hypocotyl and cotyledon derived callus cultures 25 of Acala varieties of Gossypium hirsutum including SJ2, SJ4, SJ5, B1644, B1810, B2724, GC510 and Cl and non Acala "picker" §IDX= and "stripper" variety FC 2017.

Cultures have been transformed to normal plants with novel traits or properties.

30 More particularly, the procedure involves first the sterilizing of the cotton seeds. Suitable sterilization may be achieved by immersing the seeds in 95% ethanol for 2 to 3 minutes, rinsing in sterile water one or more -16- 1 times, then soaking the seeds in a 15% solution of sodium hypochlorite for 15 to 20 minutes, and rinsing several times with sterile water.

The sterilized seeds are then transferred to a first, medium, termed a seed germination medium. A seed germination medium is one of normal salt content

A

suitable germination medium is a basal agar medium, including White's medium or half-strength MS medium.

(One-half ingredient strength). Germination normally occurs in the dark over an about 12 to about 14 day period.

Hypocotyl and/or cotyledons are preferably excised from the germinated seed, subdivided or cut into segments and cultured on a first callus growth medium such as an MS medium supplemented with growth substances. The S. presently preferred medium is the MS medium supplemented with about 0.4 mg/1 thiamine hydrochloride, about 30 g/l glucose, about 2 mg/l naphthaleneacetic acid, about 1 mg/l kinetin, a common growth regulator, and about 100 mg/l inositol and agar. Thiamine hydrochloride can generally range in concentration from 0.1 to about mg/l, glucose about 20 to about 30 g/l, about 1 to about mg/l naphthaleneacetic acid, about 1 to about 2 mg/1 kinetin and about 50 to about 100 mg/1 inositol.

The cultures are maintained at a temperature of about 25 to about 35*C, preferably about 30*C and with a light/dark cycle of about 16 hours of light and about 8 hours of dark. It is preferred to have a light intensity of about 2000 to 4000 lux, more preferably about 3000 to 30 4000 lux.

The calli formed are periodically subcultured at 3 to 4 week intervals and transferred to a fresh first callus growth medium. In the culturing of the explants, secretions of phenolic compounds from the explants can occur as evidenced by darkening of the cultured medium. In -17- 1 this instance, the medium is changed more regularly.

Darkening has been avoided by changing the culture medium every 10 days. Normally, after three to five medium changes, phenolic secretions will disappear. When this occurs, the first callus growth medium can be replaced by fresh callus growth medium containing sucrose or supplemented with sucrose as a carbon source.

After 3 to 4 weeks of culture, active calli develop on the cut surfaces of the explants. The calli are then transferred to a fresh second callus growth maintenance medium which is preferably an MS medium combined with about 1 to about 10 mg/l, preferably about 1 to about mg/l NAA. Cytokinin is employed at a concentration of from 0 to about 1 g/l. A callus growth medium is characterized as a high salt content medium containing.

as much as 10 times more salt than the seed germination medium. The essential difference between first and second callus growth medium is the carbon source. Glucose is used during 'period of phenolic secretions. Sucrose is used when secretion have stopped. The balance of the callus growth medium can remain the same or changed.

The calli are transferred in regular intervals to a fresh callus growth medium and, after generally about to 7 passages or until an anthocyanin pigmentation becomes 25 evident in a portion of the calli, which is followed by development of a yellowish-white embryogenic callus.

The embryogenic callus are then selectively subcultured and maintained by regular subculturing. The embryogenic callus contain somatic embryos at various S. 30 stages of development. Some may have reached the point of development that enables growth into small plantlets.

Most, however, require further development. Some may be advanced to germination. Other may be maintained as a source of embryos for future use.

-18- 1 With reference to FIG. 2, there is illustrated this stage of development showing calli of Acala cotton with somatic embryos 12 of differing size with some having emerging leaves 14 and roots 16. FIG. 3 illustrates a somatic embryo isolated at a late globular stage.

With reference to FIG. 4, further development may be achieved by transferring the somatic embryos to a third growth medium termed herein an embryo germination medium, a medium rich in nitrogen usually in the form of ammonia or its equivalent. Suitable media include Beasley and Ting's medium, preferably supplemented with up to about 500 mg/l casein hydrolysate.

Germination occurs from somatic embryos and, within 2 to 3 weeks, a well developed plantlet 18 of up to 6 leaves and good root system is generally formed.

*At this stage, the plantlets are transferred to soil in small clumps and grown in a standard incubator under conditions of high humidity. Temperature is normally maintained at about 25 to 300C (See Fig. 7).

20 After a period of growth, the small plants are transferred to larger pots in a greenhouse and thereafter transferred to field and grown to maturity. All the regenerated plants are preferably self-pollinated either while growing in the green house or in field conditions and the seeds collected. Seeds are then germinated and 4 to 5 week old seedlings transferred to the field for progeny row trials and other standard plant breeding procedures. Practicing the above procedure produces *viable cotton plants from about 35% of the explants in 30 the period of time from about 6 to about 8 months.

Proliferation of Embryogenic Cotton Cells In Susension Cultures As an alternative to allowing the growing embryogenic calli to be developed into a plant, the callus may be cut I I -19- 1 into smaller pieces and further developed using suspension culture techniques.

In this procedure, suspension concentration "is normally from about 750 to 1000 mg of callus parts to 8 ml. callus growth medium such as the second callus growth medium (MS medium supplemented with NAA), and allowed to grow in suspension. In a preferred embodiment, the suspension of -the callus is inserted in T-tubes and placed on a roller drum rotating at about 1.5 rpm under a light regime of about 16 hours of light and about 8 hours of dark. Growth is for about 3 to 4 weeks.

After about every 3 to 4 weeks, the suspension is filtered to remove large cell clumps of embryogenic callus depicted in groups in FIG. 5 and as isolated at late 15 globular stages as shown in FIG. 6. The filtrate is returned to a nutrient medium for a 3 to 4 week period of growth. This procedure is repeated over and over with harvesting of large clumps at about 3 to 4 week intervals, at which time the medium is supplanted in whole or in part with fresh callus growth medium. Preferably, about 4 volumes or more of the fresh medium are added to about one volume of residual suspension. It is presently P Preferred that the filter employed have a mesh size greater than about 600 microns, preferably greater than S* 25 800 microns, as it has been observed the cell masses of a particle size less than 600 microns will not develop into plants, whereas cell masses greater than 600 microns and preferably greater than 800 microns have undergone sufficient differentiation so as to become embryogenic and capable of developing into viable plants.

Suspension cultures can also be initiated by transferring of embryogenic calli to a flask, such as a DeLong or Erlenmeyer flask, containing the liquid embryo growth medium in an amount of about 20 ml of MS and NAA at a concentration of 2.0 mg/l. The flask is placed on a 1 gyrotory shaker and is shaken at about 100-110 strokes per minute. After 3 to 4 weeks the suspension is suitable for filtration as described above to remove the large cell clumps for plant development.

More typically, after the third or fourth subculture, the cell suspension from the tube or De Long or Erlenmeyer flask is plated onto agar-solidified

MS

medium containing NAA (2.0 mg/1) or Beasley Ting's medium containing casein hydrolysate (500 mg/1) media and a source of nitrogen. Within 3-4 weeks embryogenic calli with developing embryos become visible. Likewise, the larger cell clumps when plated on the above media give rise to embryogenic clumps with developing embryos.

In both suspension growth methods, the MS media is used to promote and/or sustain embryos whereas the germination medium is employed for rapid plant development.

The seedling explants, if desired, can be transformed.

In this procedure, cotyledon and/or hypocotyl segments of the sterilized seed can be used. Cotyledons are preferred.

20 The segments are placed in a medium containing an Agrobacterium vector containing a code (genetic marker) such as resistance to an antibiotic, such as for instance kanamycin for a time sufficient for the vector to transfer the gene to the cells of the explant. Generally, contact times ranging from 1 minute to 24 hours may be used and may be accompanied with intermittent or gentle agitation.

The explants are then removed and placed on agar-solidified callus growth medium such as a MS medium supplemented Sith NAA (2 g/1) and incubated about 15 to 200 hours at 30 25 to 359C, preferably 30*C, on a 16:8 hour light: dark regime.

After incubation, the explants are transferred to the same medium supplemented with the antibiotic cefotaxime preferably in a concentration of 200 mg/l. Cefotaxime is included to prevent any remaining Agrobacterium from -21- 1 proliferating and overgrowing the plant tissues.

Alternatively, the explants can be rinsed with MS medium supplemented with NAA (2mg/1) and incubated an additional 4 to 28 days before rinsing, then incubating the same medium containing cefotaxime. At the end of 4-5 weeks of culture on fresh medium, the developing callus, i.e., primary callus, is separated from the remainder of the primary explant tissue and transferred to MS medium containing NAA (2 mg/1), cefotaxime (200 mg/1) and an antibiotic such as kanamycin sulfate (50 mg/1).

Transformed primary callus, identified by virtue of its ability to grow in the presence of the antibiotic (kanamycin), is-selected and embryos developed, germinated and plants obtained following the procedure set forth above.

It is also feasible to achieve transformation of a cell suspension. Following a normal subculture growth cycle of 7 to 14 days, usually 7 to 10 days, cells are Sallowed to settle leaving a supernatant which is removed.

999. 20 The remaining concentrated suspended cells may be centrifuged at 4000Xg for 5 minutes and the excess medium is discarded. The concentrated suspension cultures are resuspended in the 8 ml of the same medium which contains the AQrobacterium. The suspension is transferred to "T" tubes and suitably agitated for incubation.

Following about 2 to 24 hours, preferably 3 to 9999 hours, of incubation to allow for bacterial attachment and DNA transfer, the suspension is removed and allowed to settle. The supernatant containing the bacteria is 30 discarded and the cells are washed with fresh medium.

The suspension may, if desired, be centrifuged for about minutes and the supernatant removed. In either event, the cells are resuspended in the same medium and transferred to a tube or flask and suspension subculture resumed. The object is to minimize the amount of unattached Agrobacterium vector left in the cell suspension.

-1 -22- 1 After about 15 to about 200 hours, typically 15 to about 72 hours, preferably 18 to 20 hours, the suspension is filtered to remove large clumps and washed with fresh liquid medium and allowed to settle. The suspension is resuspended in the fresh liquid medium containing cefotaxime (200 mg/1) plated on a solidified medium in Petri dishes.

Alternatively, the suspension may be resuspended in fresh medium containing cefotaxime and allowed to grow an additional 4 to 28 days prior plating on solidified medium in Petri dishes. Cell concentration is 1 vol. of suspension cells plus 3 vol. of medium with cefotaxime.

Kanamycin at 10 to 300 mg/1 preferably about 20 to 200 mg/1 more preferably about 40 to 80 mg/1 is included in the medium for selection of transformed cells expressing the neomycin phosphotransferase (NPT) gene. Cells and embryos proliferating in the selective concentration of kanamycin are further grown as set forth above to mature somatic embryos capable of germinating and regenerating 20 into whole plants according to the procedures described herein.

Using the above procedure and with reference t6 FIG. 9, there is shown variable cell colonies which is consequence of transformation. There exists cotton cells 20 exhibiting resistance to the antibiotic kanamycin.

With reference to FIG. 10, transformed calli are shown developing into somatic embryos on an antibiotic MS medium. FIG. 11 shows transformed somatic embryos established to have kanamycin resistance and transformed 30 to have resistance to the herbicide glyphosate. FIG. 12 shows plants from the embryos of FIG. 11. FIG. 13 shows cells transformed to have resistance to lepidopterous insects growing on an MS medium and in FIG. 14 transferred to a Beasley and Ting's medium whereas FIG. shows further development of the plantlets of FIG. 14 to more mature plantlets.

-23- 1 COTTON REGENERATION Example I Regeneration of plants starting from cotyledon exDlants Seeds of AslAa cotton variety SJ2 of Gossi2ypm hirsutum were sterilized by contact with 95% alcohol for three minutes, then twice rinsed with sterile water and immersed with a 15% solution of sodium hypochlorite for minutes, then rinsed in sterile water. Sterilized seeds were germinated on a basal agar medium in the dark for approximately 14 days to produce a seedling. The cotyledons of the seedlings were cut into segments of 2-4mm 2 which were transferred aseptically to a callus inducing medium consisting of Murashige and Skoog (MS) major and minor salts supplemented with 0.4 mg/1 thiamine- HCl, 30 g/1 glucose, 2.0 mg/1 naphtaleneacetic acid (NAA), I mg/1 kinetin, 100 mg/1 of m-inositol, and agar 20 The cultures were incubated at about 309C under conditions of 16 hours light and 8 hours darkness in a Percival incubator with fluorescent lights (cool daylight) providing a light intensity of about 2000-4000 lux.

Calli were formed on the cultured tissue segments 25 within 3 to 4 weeks and were white to gray-greenish in o. color. The calli formed were subcultured every three to four weeks onto a callus growth medium comprising

MS

medium containing 100 mg/1 m-inositol, 20 g/1 sucrose, 2 g/l naphthaleneacetic acid (NAA) and agar. Somatic embryos formed four to six months after first placing tissue explants on a callus inducing medium. The callus and embryos were maintained on a callus growth medium by subculturing onto fresh callus growth medium every three to four weeks.

-24- 1 Somatic embryos which formed on tissue pieces were explanted either to fresh callus growth medium, or to Beasley Ting's medium (embryo germination medium). The somatic plantlets which were formed from somatic embryos were transferred onto Beasley and Ting's medium which contained 1200 mg/1 ammonium nitrate and 500 mg/1 casein hydrolysate as an organic nitrogen source. The medium was solidified by a solidifying agent (Gelrite) and plantlets were placed in Magenta boxes.

The somatic embryos developed into plantlets within about three months. The plantlets were rooted with six to eight leaves and about three to four inches tall and were transferred to soil and maintained in an incubator under high humidity for three to four weeks and then transferred to a greenhouse. After hardening, plants were also transferred to open tilled soil.

Example 2 20 The procedure of Example 1 was repeated using instead half-strength MS medium in which all medium components have been reduced to one-half the specified concentration.

Essentially the same results were obtained.

25 Example 3 The procedures of Examples I and 2 were repeated except that the explant was the hypocotyl segments. The same results were obtained.

30 Example 4 The procedure of Examples 1 and 2 were repeated except that the explant was the immature zygotic embryo.

Essentially the same results were obtained.

1 Example The procedure of Examples 1 and 2 was repeated with Acala cotton varieties SJ4, SJ5, SJ2C-1, GC510, B1644, B 2724, B1810, the picker variety Siokra and the stripper variety FC2017. All were successfully regenerated.

Example..6 The procedure of Example 1 was repeated to the extent of obtaining callus capable of forming somatic embryos. Pieces of about 750-1000 mg of actively growing embryogenic callus was suspended in 8 ml units of liquid suspension culture medium comprised of MS major and minor salts, supplemented with 0.4 mg/1 thiamine HC1, g/1 sucrose, 100 mg/1 of inositol and naphthaleneacetic acid (2 mg/1) in T-tubes and placed on a roller drum rotating at 1.5 rpm under 16:8 light:dark regime. Light intensity of about 2000-4500 lux was again provided by fluorescent lights (cool daylight).

After four weeks, the suspension was filtered through an 840 micron size nylon mesh to remove larger cell clumps. The. fraction smaller than 840 microns were allowed to settle, washed once with about 20-25 ml of 25 fresh suspension culture medium. This suspension was transferred to T-tubes (2 ml per tube) and each tube diluted with 6 ml of fresh suspension culture medium.

The cultures were maintained by repeating the above procedure at 10-12 day intervals. Namely, the suspension 30 was filtered and only the fraction containing cell aggregates smaller than 840 microns was transferred to fresh suspension culture medium. In all instances, the fraction containing cell clumps larger than 840 microns was placed onto the callus growth medium to obtain mature somatic embryos.

-26- 1 The somatic embryos that were formed on callus growth medium were removed and transferred to embryo germination medium and using the protocol of Example I were germinated, developed into plantlets and then field grown plants.

Examnle 7 The procedure of Example 6 was repeated except that suspension cultures were formed by transferring 750-1000 mg of embryogenic calli to a DeLong flask containing ml of the MS liquid medium containing 2 mg/l NAA.

The culture containing flask was placed on a gyrotory shaker and shaken at 100-110 strokes/minute. After three weeks the suspension was filtered through an 840 micron nylon mesh to remove the large cell clumps for plant growth, as in Example 4. The less than 840 micron suspension was allowed to settle, washed once in the MS liquid medium and resuspended in 2 to 5 ml of the MS liquid medium. The suspension was subcultured by transfer 20 to fresh medium in a DeLong flask containing 1-2 ml of suspension and 15 ml of fresh MS liquid medium. The cultures are maintained by repeating this procedure at seven to ten day intervals. At each subculture only the less than 840 micron' suspension was subcultured and the 25 large clumps (840 microns or greater) were used for plant growth.

Example 8 30 After three or four subcultures using the suspension growth procedure of Examples 6 and 7, 1.5 to 2.0 ml of cell suspension from the T-tube and DeLong flask were in each instance plated onto agar-solidified MS medium containing 2 mg/1 NAA and Beasley Ting medium containing 500 mg/l casein hydrolysate. Within three to four weeks -27embryogenic calli with developing embryos became visible.

Again, the 840 micron or greater cell clumps were plated on the callus growth medium giving rise to embryogenic clumps with developing embryos which ultimately grew into plants.

COTTON TRANSFORMATION Example 9 Transformation To Form Tumorous-Phenotvye With Aarobacteria LBA 4434 An Acala cotton suspension culture was subcultured for three to four months in T-tubes with the medium

(MS

medium containing 2 mg/1 NAA) being changed every seven to ten days. After any medium change thereafter the cells can be allowed to settle and harvested for transformation. The supernatant was removed by pipeting and cells transformed with the Agrobacterium strain LBA 20 4434. The Agrobacterium strain LBA 4434 is described in (Hoekema, A. et al. Nature 303: 179-180, 1983, incorporated herein by reference) contains a Ti plasmid-derived binary plant transformation system. In such binary systems, one plasmid contains the T-DNA of a Ti-plasmid, the second plasmid contains the yvr-region of a Ti-plasmid.

The two plasmids cooperate to effect plant transformation.

In the strain -LBA 4434, the T-DNA plasmid, pAL 1050, contains TL of pTiAch5, an octopine Ti-plasmid and the vir-plasmid in' strain LBA 4434, pAL4404, contains the 30 intact virulence regions of pTiAch 5 (Ooms, G. et al.

P" langid 7:15-29, 1982, incorporated herein by reference).

Strain LBA 4434 is available from Dr. Robert Schilperoort of the Department of Biochemistry, University of Leiden, The Netherlands.

-28- 1 The transforming Agrobacterium strain was taken from a glycerol stock, inoculated in a small overnight culture, from which a 50-ml culture was inoculated the following day. Agrobacteria was grown on YEB medium containing per liter in water adjusted to pH 7.2 with NaOH, 5 g beef extract, 1 g yeast extract, 5 g peptone, g sucrose. After autoclaving, 1 ml of 2 M MgCl 2 is added after which antibiotics, as required to kill other strains. The absorbance at 600 nm of the 50 ml overnight culture is read, the culture centrifuged and the formed pellet resuspended in the plant cell growth medium

(MS

medium plus NAA at 2 mg/1) to a final absorbance at 600 nm of Eight ml of this bacterial suspension of Agrobacterium 15 LBA 4434 was added to each T-tube containing the suspension plant cells after removal of the supernatant liquid.

The T-tube containing the plant and bacteria cells was agitated to resuspend the cells and returned to a roller drum for three hours to allow the Agrobacteria to attach to the plant cells. The cells were then allowed to e settle and the residual supernatant removed. A fresh aliquot of growth medium was added to the T-tube and the suspension allowed to incubate on a roller drum for a period of 18 to 20 hours in the presence of any residual Agrobacteria which remained. After this time, the cells were again allowed to settle, the supernatant removed and the cells washed twice with a solution of growth medium containing cefotaxime (200 ug/ml). After washing, the cells from each T-tube were resuspended in 10 ml growth medium containing cefotaxime (200 ug/ml in all cases) and 1 ml aliquots of the suspension plated on petri dishes.

Infected cells grew on the growth medium to which no phytohormones were added establishing the tissue had received the wild-type phytohormone genes in T-DNA. The -29- 1 cells developed tumors, further indicating transformation of the cultures.

Transfmtnof Cotton To Form a KanamVin-sitant Non-Tumorous Phenotvye The suspension culture as obtained in Example 9 was transformed using an Agrobacteria which contained the T- DNA containing binary vector pCIB 10. (Rothstein,

S.J.

et al. gfiA 53: 153-161, 1987, incorporated herein by reference) as well as the pAL 4404 YIr-plasmid. The T- DNA of pCIB 10 contains a chimeric gene composed of the promoter from nopaline synthase, the coding region from encoding the enzyme neomycin phosphotransferase, and the terminator from nopaline synthase. The Agrobacteria containing pCIB 10 were grown on YEB medium containing kanamycin (50 ug/ml). Transformation was accomplished in the same manner as in Example 10 except that the 1 ml aliquots resulting in cells and Agrobacteria were 20 immediately plated on selective media containing either kanamycin (50 ug/ml) or G418 (25 ug/ml). Expression of the nos/neo/nos chimeric gene in transformed plant tissue allows the selection of this tissue in the presence of both antibiotics. The existence in two to four weeks of transformed tissue became apparent on the selection plates. Uninfected tissue as well as added control tissue showed no signs of growth, turned brown and died.

Transformed tissue grew very well in the presence of both kanamycin and G418.

At this time, tissue pieces which were growing well were subcultured to fresh selection medium. Somatic embryos formed on these tissue pieces and were explanted to fresh non-selective growth media. When the embryos began to differentiate and germinate, at the point where they were beginning to form roots and had two or

M

1 three leaves, they were transferred to Magenta boxes containing growth medium described in Example 1. Growth was allowed to proceed until a plantlet had six to eight leaves, at which time it was removed from the agar medium.

The plantlets were now placed in potting soil, covered with a beaker to maintain humidity and placed in a Percival incubator for four to eight weeks. At this time, the plant was removed from the beaker and transferred to a greenhouse. The plants grew in the greenhouse, flowered and set seed.

The procedure of Example 10 was followed, except that the transforming Agrobacteria used contained the T- DNA vector DEI PEP10 as well as the pAL4404 yir plasmid.

DEI PEP10, shown in Figure 33, utilizes two T-DNA PstI cleaved right border sequences from A. Tumefaci. (strain C-58) which had been further subdivided with BamHI for integration in the plant genome, a passenger maize phosphoenolpyruvate carboxylase gene (Pepcase gene), and a chimeric gene (NOS/NPT/TK) capable of expression in plants and conferring resistance to the antibiotics kanamycin and G418. This chimeric gene utilizes a nopaline synthetase promoter, the neomycin phosphotransferase

II

coding region from Tn5, and the terminator from the herpes simplex virus thimidine kinase gene. Following transformation, embryogenic callus and embryos were obtained by selection on kanamycin (50 mg/l). No resistant callus was obtained from the control (non-transformed callus) plated on kanamycin at this level (50 mg/1).

Example 12, ransfrton of Cotton Susension Culture Cells To A CIvDhosate-Tolerant PhenotvDe The procedure of Example 10 was followed, except that the transforming Agrobacteria used contained the T- -31- 1 DNA vector pPMG85/587 (Fillatti, J. et al., Mol Gen.

Genet. 20j: 192-199, 1987, incorporated herein by reference) as well as the pAL4404 ylr plasmid. The plasmid pPMG85/587 carries three chimeric genes capable of expression in plants. Two genes code for neomycin phosphotransferase (NPT) which confers resistance to the antibiotics kanamycin and G418. The third chimeric gene, containing the coding sequence from a mutant aoA gene of S. typhimurium, confers tolerance to the herbicide glyphosate (Comai, et al., Science 221: 370-371, 1983, incorporated herein by reference). The Agrobacteria containing pPMG85/587 were grown on medium containing kanamycin (100 ug/ml). Transformation is accomplished as detailed in Example 10 except that the suspension is 15 allowed to grow for 28 days at which time 1 ml aliquots were plated on medium containing selective antibiotics.

Expression of the NPT chimeric gene in transformed plant tissue allowed selection of this tissue on both antibiotics. In this instance the selective antibiotic 20 was kanamycin (50 ug/ml).

In two to four weeks, transformed tissue became apparent on the selection plates. Plant tissue, individual embryos and callus were then placed on growth medium containing the herbicide glyphosate 1mM and transformed tissue continued to grow well. Extraction and analysis of the proteins of both callus and embryos confirmed the presence of the product of the glyphosate tolerance gene.

Example 13 Transformation of Cotton SusDension Culture Cells To a Hyaromvcin-Resistant Non-Tumorous PhenotvDe The transformation procedure of Example 10 was followed except there was used as the transforming Agrobacteria one containing the T-DNA binary vector pCIB -32- 1 715 (Rothstein, S. J. et al. 21Me 53: 153-161, 1987) as well as the jXr plasmid. The T-DNA of pCIB 715 contains a chimeric gene composed of the promoter and terminator from the cauliflower mosaic virus (CaMV) 35S transcript (Odell et al, Nature All: 810-812, 1985, incorporated herein by reference) and the coding sequence for hygromycin B phosphotransferase (Gritz, L. and J. Davies, Gene 179-188, incorporated herein by reference). Agrobacteria containing pCIB 715 was grown on YEB containing kanamycin (50 ug/mi).

Transformation was accomplished as detailed in Example 1 0 again with the change that the 1 ml aliquots were plated immediately on medium containing as the selective antibiotic 50 ug/ml hygromycin. Expression of 15 the chimeric hygromycin gene in transformed plant tissue allows the selection of this tissue on the medium containing hygromycin. Transformed tissue was grown in the manner described in Example 8 on the selection growth medium establishing transformation had occurred.

Example 14 Transformation of Cotton Susension Culture Cells To Confer Resistance To LeidoDteran Insects The procedure of Example 10 was followed except where changes are noted below. Different transforming Agrobacteria were used. Also, after plant tissue was selected on an antibiotic for the selection of transformed material, it was further selected for expression of the BT gene as defined herein.

The Agrobacteria used contained the T-DNA vector (Rothstein et al, Gene 53:153-161 (198) incorporated herein by reference into which had been inserted the following chimeric Bacillus thuriniaensis endotoxin genes ("BT Genes"): -33- 1 To prepare the Agrobacterium vector there was fused the CaMV gene VI promotor and protoxin coding sequences.

A derivative of phage vector mpl9 (Yanish-Perron et al., 1985) was first constructed. The steps are shown 'in FIGS. 16 and 17. First, a DNA fragment containing approximately 155 nucelotides 5' to the protoxin coding region and the adjacent approximately 1346 nucleotides of coding sequence are inserted into mpl9. Phage mpl9 ds rf (double-stranded replicative form) DNA was digested with restriction endonucleases SacI and Smal and the approximately 7.2-kbp vector fragment was purified after electrophoresis through low-gelling temperature agarose by standard procedures. Plasmid pKU25/4, containing approximately *10 kbP (kilobase pairs) of Bacillus 15 thuringiensis DNA, including the protoxin gene, was obtained from Dr. J. Nueesch, CIBA-Geigy Ltd., Basle, Switzerland. The nucleotide sequence of the protoxin gene present in plasmid pkU25/4 is shown in Formula 1 below. Plasmid pKU25/4 DNA was digested with endonucleases HpaI and Sa c I, and a 1503 bp fragment containing nucleotides 2 to 1505 of Formula 1 and purified. This fragment contains approximately 155 bp of bacteria promotor sequences and approximately 1346 bp of the start of the protoxin coding sequence. Approximately 100 ng of each fragment is then mixed, T4 DNA ligase added, and incubated at 150C overnight. The resulting mixture was transformed into E. coli strain HB 101, mixed with indicator bacteria E. coli JM 101 and plated. One phage (mpl9/bt) was used for further construction below.

Next, a fragment of DNA containing the CaMV gene VI promoter, and some of the coding sequences for gene VI, was inserted into wpl9/bt. Phage mpl9/bt ds rf DNA is digested with BamHI, treated with the large fragment of DNA polymerase to create flush ends and recleaved with endocuclease PstI. The larger vector fragment was purified -34- 1 by electrophoresis as described above. Plasmid pABDI is described in Paszkowski et al., EMBO J. 3, 2717-2722, (1984) incporated herein by reference. Plasmid pABDl DNA is digested with PstI and HindIII. The fragment approximately 465 bp long containing the CaMV gene VI promotor and approximately 75 bp of gene VI coding sequende was purified. The two fragments were ligated and plated as described above. One of the resulting recombinant phages, mpl9/btca contained the CaMV gene VI promotor sequences, a portion of the gene VI coding sequence, approximately 155 bp of Bacillus thuringiensis DNA upstream of the protoxin coding sequence, and approximately 1346 bp of the protoxin coding sequence. To fuse the CaMV promotor sequences precisely to the protoxin coding sequenes, the intervening DNA was deleted using oligionicleotide-directed mutagensis of mpl9/btca

DNA.

A DNA oligonucleotide with the sequence TTCGGATTGTTATCCATGGTTGGAGGTCTGA was synthesized by routine procedures using an Applied Biosystems

DNA

20 Synthesizer. This oligonucleotide is complimentary to those sequences in phage mpl9/btca DNA at the 3' end of the CaMV promotor (nucleotides 5762 to 5778 in Hohn, Current Topics, in Microbiology and Immunology, 62, 193- 235 (1982) incorporate herein by reference and the beginning of the protoxin coding sequence (nucleotides 156 to 172 in formula I above). The general procedure for the mutagensis is that described in Zoller and Smith, Meth, Enzym., 100 468-500 (1983) incorporated herein by reference. Approximately five micrograms of single-standed phage mpl9/btca DNA was mixed with 0.3 mg of phosphorylated oligonucleotide in a volume of 40 ul. The mixture was heated to 65'C for 5 min, cooled to 50*C, and slowly cooled to 46C. Next, buffer, nucleotide triphosphates, ATP, T 4 DNA ligase and large fragment of DNA polymerase were added and incubated overnight at 150C as described 1 [Zoller and Smith Meth. Enzym., 100, 468-500 (1983)] incorporated herein by reference. After agarose gel electrophoresis, circular double-stranded DNA was purified and transfected into E. coli strain JM101. The resulting plaques are screened for sequences that hybridize with 32P-labeled oligonucleotide, and phage are analyzed by DNA restriction endonuclease analysis. Among the resulting phage clones were ones which have correctly deleted the unwanted sequences between the CaMV gene VI promotor ahd the protoxin coding sequence. This phage is called mpl9/btca/del (see FIG. 17).

Next, a plasmid was constructed in which the 3' coding region of the protoxin gene was fused to CaMV transcription termination signals. The steps are shown in FIG. 18.

15 First, plasmid pABDI DNA was digested with endonucleases BamHI and BglII and a 0.5 kbp fragment containing the CaMV transcription terminator sequences isolated. Next plasmid pUC19, Yanisch-Perron et al., Gene, 23, 103-119 (1985) incorporated herein by reference was digested with BamHI, mixed with the 0.5 kbp fragment and incubated with T 4 DNA ligase. After transformation of the DNA into E. coli strain HB101, one of the resulting clones, called plasmid p702, was obtained which has the structure shown in FIG. 18. Next, plasmid p702 DNA was cleaved with endonucleases SacI and SmaI, and the larger, approximately 3.2 kbp fragment isolated by gel electrophoresis. Plasmid pKU25/4 DNA was digested with endonucleases AhaII and SacI, and the 2.3-kbp fragment (nucleotides 1502 to 3773 of Formula 1) containing the 3' portion of the protoxin coding sequence (nt 1504 to 3773) was isolated after gel electrophoresis. These two DNA fragments are mixed, incubated with T 4 DNA ligase and transformed into E. coli strain HB101. The resulting plasmid was p702/bt (FIG. 18).

-36- 1 Finally, portions of phage mpl9/btca/del ds rf DNA and plasmid p702/bt were joined to create a plasmid containing the complete protoxin coding sequence flanked by CaMV promoter and terminator sequences (see FIG. 18).

Phage mpl9/btca/del DNA was digested with endonucleases SacI and SphI, and a fragment of approx. 1.75 kbp is purified following agarose gel electrophoresis. Similarly, plasmid p702/bt DNA is digested with endonucleases SacI and Sall and a fragment of approximately 2.5 kbp is isolated. Finally, plasmid pBR 322 DNA (Bolivar et al., Gene, 2, 95-113 (1977) incorporated herein by reference was digested with Sall and SphI and the larger 4.2-kbp fragment isolated. All three DNA fragments were mixed and incubated with T4 DNA ligase and transformed into E.

coli strain HB101. The resulting plasmid, PBR322/btl4 is a derivative of PBR322 containing the CaMV gene VI promoter and translation start signals fused to the Bacillus thuringiensis crystal protein coding sequence, followed by CaMV transcription termination signals (shown 20 in FIG. 19).

The vector pCIB10 is a Ti-plasmid-derived vector useful for transfer of the chimeric gene to plants via Agrobacterium tumefaciens. The vector is derived from the broad host range plasmid pRK 252, which may be obtained from Dr. W. Barnes, Washington University, St. Louis, Mo. The vector also contains a gene for kanamycin resistance in Agrobacterium, from Tn903, and left and right T-DNA border sequences from the Ti plasmid pTiT37.

Between the border sequences are the polylinker region from the plasmid pUC18 and a chimeric gene that confers kanamycin resistance in plants.

First, plasmid pRK252 was modified to replace the gene conferring tetracycline-resistance with one conferring resistance to kanamycin from the transposon Tn903 [Oka, et al., J. Mol. Biol., 147, 217-226 (1981) incorporated -37- 1 herein by reference], and was also modified by replacing the unique EcoRI site in pRK252 with a BglII site (see FIG. 20 for a summary of these modifications). Plasmid pRK252 was first digested with endonucleases Sall and SmaI, then treated with the large fragment of DNA polymerase I to create flush ends, and the large vector fragment purified by agarose gel electrophoresis. Next, plasmid p368 was digested with endonuclease BamHI, treated with the large fragment of DNA polymerase, and an approximately 1050-bp fragment isolated after agarose gel electrophoresis; this fragment containing the gene from, transposon Tn903 which confers resistance to the antibiotic kanamycin [Oka et al., J. Mol. Biol., 147, 217-226 (1981) incorporated herein by reference]. Both 15 fragments were then treated with the large fragment of DNA; polymerase to create flush ends. Both fragments are mixed and incubated with T4 DNA ligase overnight at 150C. After transformation into E. coli strain HB101 and selection for kanamycin resistant colonies, plasmid pRK252/Tn903 is obtained (see FIG. 19).

Plasmid pRK252/Tn903 was digested at its EcoRI site, followed by treatment with the large fragment of E. coli DNA polymerase to create flush ends. This fragment was added to synthetic BglII restriction site linkers, and incubated overnight with T 4 DNA ligase. The resulting DNA was digested with an excess of BglII restriction endonuclease and the larger vector fragment purified by agarose gel electrophoresis. The resulting fragment was again incubated with T4 DNA ligase to recircularize the fragment via its newly-added BglII cohesive ends.

Following transformation into E. coli strain HB101, plasmid pRK252/Tn903/BglII is obtained (see FIG. A derivative of plasmid pBR322 was constructed which contains the Ti plasmid T-DNA borders, the polylinker region of plasmid pUC19, and the selectable gene for -38- 1 kanamycin resistance in plants (see FIG. 21). Plasmid pBR325/Eco29 contains the 1.5-kbp EcoRI fragment from the nopaline Ti plasmid pTiT37. This fragment contains the T-DNA left border sequence; Yadav et al., Proc.

Natl. Acad. Sci. USA, 79, 6322-6326 (1982) incorporated herein by reference. To replace the EcoRI ends of this fragment with HindIII ends, plasmid pBR325/Eco29 DNA was digested with EcoRI, then incubated with nuclease Si, followed by incubation with the large fragment of DNA polymerase to create flush ends, then mixed with synthetic HindIII linkers and incubated with T4 DNA ligase. The resulting DNA was digested with endonucleases Clal and an excess of HindIII, and the resulting 1.1-kbp fragment containing the T-DNA left border purified by gel 15 electrophoresis. Next, the polylinker region of plasmid pUC19 was isolated by digestion of the plasmid DNA with endonucleases EcoRI and HindIII and the smaller fragment (approx. 53 bp) isolated by agarose gel electrophoresis.

Next, plasmid pBR322 was digested with endonucleases 20 EcoRI and Clal, mixed with the other two isolated fragments, incubated with T4 DNA ligase and transformed into E. coli strain HB101. The resulting plasmid, contains the polylinker and T-DNA left border in a derivative of plasmid pBR322 (see FIG. 21).

A plasmid containing the gene for expression of kanamycin resistance in plants was constructed (see FIGS. 22 and 23). Plasmid Bin6 obtained from Dr. M.

Bevan, Plant Breeding Institute, Cambridge, UK. This plasmid is described in the reference by Bevan, Nucl.

Acids Res., 12, 8711-8721 (1984) incorporate herein by reference. Plasmid Bin6 DNA was digested with EcoRI and HindIII and the fragment approximately 1.5 kbp in size containing the chimeric neomycin phosphotransferase

(NPT)

gene is isolated and purified following agarose gel electrophoresis. This fragment was then mixed with plasmid -39- 1 pUC18 DNA which had been cleaved with endonucleases EcoRI and HindIII. Following incubation with T4 DNA ligase, the resulting DNA was transformed into E. coli strain HB101. The resulting plasmid is called pUC18/neo.

This plasmid DNA containing an unwanted BamHI recognition sequence between the neomycin phosphotransferase gene and the terminator sequence for nopaline synthase; see Bevan, Nucl. Acids Res., 12, 8711-8721 (1984) incorporated herein by reference.. To remove this recognition sequence, plasmid pUC18/neo was digested with endonuclease BamHI, followed by treatment with the large fragment of DNA polymerase to create flush ends. The fragment was then incubated with T4 DNA ligase to recircularize the fragment, and transformed into E. coli strain HB101. The resulting 15 plasmid, pUCl8/neo(Bam) has lost the BamHI recognition sequence.

The T-DNA right border sequence was then added next to the chimeric NPT gene (see FIG. 24). Plasmid pBR325/Hind23 contains the 3.4-kbp HindIII fragment of 20 plasmid pTiT37. This fragment contains the right T-DNA border sequence; Bevan et al., Nucl, Acids Res., 21, 369-385 incorporated herein by reference. Plasmid S. pBR325/Hind23 DNA was cleaved with endonucleases SacII and HindIII, and a 1.0 kbp fragment containing the right border isolated and purified following agarose gel electrophoresis. Plasmid pUCl8/neo(Bam) DNA was digested with endonucleases SacII and HindIII and the 4.0 kbp vector fragment isolated by agarose gel electrophoresis.

The two fragments were mixed, incubated with T4 DNA ligase and transformed into E. coli strain HB101. The resulting plasmid, pCIB4 (shown in FIG. 23), contains the T-DNA right border and the plant-selectable marker for kanamycin resistance in a derivative of plasmid pUC18.

Next, a plasmid was constructed which contains both the T-DNA left and right borders, with the plant selectable 1 kanamycin-resistance gene and the polylinker of pUC18 between the borders (see FIG. 28). Plasmid pCIB4 DNA was digested with endonuclease HindIII, followed by treatment with the large fragment of DNA polymerase to create flush ends, followed by digestion with endonuclease EcoRI. The 2.6-kbp fragment containing the chimeric kanamycin-resistance gene and the right border ot T-DNA was isolated by agarose gel electrophoresis. Plasmid DNA was digested with endonuclease AatII, treated with T4 DNA polymerase to create flush ends, then cleaved with endonuclease EcoRI. The larger vector fragment was purified by agarose gel electrophoresis, mixed with the pCIB4 fragment, incubated with T4 DNA ligase, and 0006 transformed into E. coli strain HB101. The resulting plasmid, pCIB2 (shown in FIG. 24) is a derivative of "o plasmic pBR322 containing the desired sequences between the two T-DNA borders.

The following steps complete construction of the vectok pCIBl0, and are shown in FIG. 25. Plasmid pCIB2 20 DNA was digested with endonuclease EcoRV, and synthetic linkers containing BglII recognition sites are added as described above. After digestion with an excess of BglII endonuclease, the approximately 2.6-kbp fragment was isolated after agarose gel electrophoresis. Plasmid 25 pRK252/Tn903/BglII, described above (see FIG. 20) was digested with endonuclease BglII and then treated with phosphatase to prevent recircularization. These two DNA fragments are mixed, incubated with T4 DNA ligase and transformed into E. coli strain HB101. The resulting plasmid is the completed vector, pCIB1O.

Insertion of the chimeric protoxin gene into vector is by the steps shown in FIG. 26. Plasmid pBR322/btl4 DNA was digested with endonucleases Pvul and SalI, and then partially digested with endonuclease BamHI. A BamHI-SalI fragment approx. 4.2 kbp in size, -41- 1 containing the chimeric gene, was isolated following agarose gel electrophoresis, and mixed with plasmid DNA which had been digested with endonucleases BamHI and SalI. After incubation with T4 DNA ligase and transformation into E. Coli strain HB101, plasmid shown in FIG. 26 and contained the chimeric protoxin gene in the plasmid vector In order to transfer plasmid pCIB10/19Sbt from E.

coli HB101 to Agrobacterium, an intermediate E. coli host strain S17-1 was used. This strain, obtainable from Agrigenetics Research Corp., Boulder, Co. contains mobilization functions that transfer plasmid directly to Agrobacterium via conjugation, thus avoiding the necessity to transform naked plasmid DNA directly into Agrobacterium (reference for strain S17-1 is Simon et al., "Molecular Genetics of the Bacteria-Plant Interaction", A Puhler, ed, Springer Verlag, Berlin, pages 98-106, 1983, incorporated herein by reference).

First, plasmid pCIB10/19Sbt DNA is introduced into calcium chloride-treated S17-1 cells. Next, cultures of transformed S17-1 cells and Agrobacteriuam tumefaciens strain LBA4404 [Ooms et al., Gene, 14, 33-50 (1981) incorporated herein by reference] were mixed and mated on an N agar (Difco) plate overnight at room temperature.

A loopful of the resulting bacteria are streaked onto AB minimal media; Chilton et al., Proc. Natl. Acad. Sci.

USA, 77, 7347-7351 (1974), incorporated herein by reference, plated with 50ug/ml kanamycin and incubated at 28"C. Colonies were restreaked onto the same media, then restreaked onto NB agar plates. Slow-growing colonies were picked, restreaked onto AB minimal media with kanamycin and single colonies isolated. This procedure selects for .'Agrobacteria containing the pCIB10/19SBt plasmid.

-42- 1 Construction of a Bacillus thuringiensis protoxin chimeric gene with the CaMV 35S promoter was achieved by construction of a CaMV 35S Promoter Cassette Plasmid pCIB710 was constructed as shown in FIG. 27. This plasmid contained CaMV promoter and transcription termination sequences for the 35S RNA transcript [Covey, S.N., Lomonossoff, G.P. and Hull, Nucleic Acids Research vol. 9, 6735-6747 (1981) incorporated herein by reference].

A 1149-bp BglII restriction fragment of CaMV DNA in Hohn et al., Current Topics in Microbiology and Immunology, 9a, 194-220 and Appendices A to G (1982) incorporated herein by reference] was isolated from plasmid pLV11l (obtained from Dr. S. Howell Univ. California-San Diego; alternatively, the fragment can be isolated directly from CaMV DNA) by preparative agarose gel electrophoresis as described earlier and mixed with BamHI-cleaved plasmid pUC19 DNA, treated with T4 DNA ligase, and transformed into E. coli. The BamHI restriction site in the resulting plasmid has been destroyed by ligation of the BglII 0 cohesive ends to the BamHI cohesive ends. The resulting plasmid, called pUC19/35S, was then used in oligonucleotide-directed in-vitro mutagensis to insert the BamHI recognition sequence GGATCC immediately followingCaMV nucleotide 7483 in the Hohn reference.

The resulting plasmid, pCIB710, contains the CaMV promotor region and transcription termination region separated by a BamHI restriction site. DNA sequences inserted into this BamHI site will be expressed in plants by the CaMV transcription regulation sequences. pCIB710 30 does not contain any ATG translation initiation codons between the start of transcription and the BamHI site.

Insertion of the CaMV 35S promoter/Terminator Cassette into pCIB10 occurred by the steps outlined in FIG. 28.

Plasmids pCIB10 and pCIB710 DNAs were digested with EcoRI and SalIl, mixed and ligated. The resulting plasmid, 35 -43- 1 pCIB10/710 has the CaMV 35S promoter/terminator cassette inserted into the plant transformation vector The CaMV 35S sequences are between the T-DNA borders in pCIBlO, and thus will be inserted into the plant genome in plant transformation.

Insertion of the Bacillus thuringiensis protoxin gene into pCIB10/710 occurred by the steps outlined in FIG.

29. As a source of the protoxin gene, plasmid pCIB10/19Sbt was digested with BamHI and Ncol, and the 3.6-kb fragment containing the protoxin gene was isolated by preparative gel electrophoresis. The fragment was then mixed with synthetic NcoI-BamHI adapter with the sequence CATGGCCGGATCCGGC-3', then digested with BamHI. This step creates BamHI cohesive ends at both ends of the protoxin fragment. This fragment was then inserted into BamHI-cleaved pCIBO/710. The resulting plasmid, pCIB10/35Sbt, shown in FIG. 29, contains the protoxin gene between the CaMV 35S promoter and transcription termination sequences.

20 Transfer of the plasmid pCIB10/35Sbt into Agrobacterium tumefaciens strain LBA4404 was as described above.

Construction of a deleted Bacillus thuringiensis protoxin gene containing approximately 725 amino acids, 25 and construction of a chimeric gene containing this deleted gene with the CaMV .35S promoter was made by removing the COOH-terminal portion of the gene by cleaving at the KpnI restriction endonuclease site at position 2325 in the sequence shown in Formula 1. Plasmid pCIB10/35Sbt (FIG. 29) was digested with BamHI and KpnI, e and the approximately 2.2-kbp BamHI/KpnI fragment containing the deleted protoxin gene isolated by preparative agarose gel electrophoresis. To convert the KpnI site at the 3' end to a BamHI site, the fragment was mixed with a KpnI/BamHI adapter oligonucleotide and -44- 1 ligated. This fragment is then mixed with BamHI-cleaved pCIB10/710 (FIG. 28).

A deleted protoxin gene containing approximately 645 amino acids was made by removing the COOH-terminal portion of the gene by cleaving at the Bcll restriction endonuclese site at position 2090 in the sequence shown in Formula 1. Plasmid pCIB10/35Sbt (FIG. 29) was digested with BamHI and Bell, and the approximately 1.9-kbp BamHI/BcII fragment containing the deleted protoxin gene isolated by reprarative agarose gel electrophoresis.

Since BclI creates a cohesive end compatible with BamHI, no further manipulation is required prior to ligating this fragment 'into BamHI-cleaved pCIB10/710 (FIG. 28).

The resulting plasmid, which has the structure pCIB10/35Sbt(BclI) shown in FIG. 31 was selected on kanamycin.

The resulting transformants, designated pCIB10/35Sbt(KpnI) and shown in FIG. 30, contain the deleted protoxin gene of approximately 725 amino acids.

These transformants are selected on kanamycin.

A deleted protoxin gene was made by introducing a BamHI cleavage site (GGATCC). This is done by cloning the BamHI fragment containing the protoxin sequence from pCIB10/35Sbt into mpl8, and using standard oligonucleotide mutagensis procedures described above. After mutagensis, double-stranded replicative form DNA is prepared from the M13 clone, which is then digested with BamHI. The Capproximately 1.9-kbp fragment containing the deleted protoxin gene is inserted into BamHI-cleaved pCIB10/710.

30 The resulting plasmid, which the structure pCIB10/35Sbt(607) shown in FIG. 32 is selected for on kanamycin.

The pCIB10/Sbt 607 was used. Transformation was accomplished as detailed in Example 7 with the change that the 1 ml aliquots were plated immediately on medium 1 containing sel'ective antibiotics. This selection medium contained kanamycin (50 ug/ml) or G418 (25 ug/ml).

Expression of the NPT chimeric gene in both transformed plant'tissue allows the selection of this tissue on either antibiotic.

In 2-4 weeks, transformed tissue became apparent on the selection plates. Plant material was selected on kanamycin or G418. Plant tissue (either individual embryos or callus) was then extracted with buffer and assayed for expression of the BT gene product by ELISA assay. The conditions of extraction are as follows: per 100mg of tissue, homogenize in 0.1 ml of extraction buffer containing 50 mM NaCO0 3 (pH9.5), 0.05% Triton, 0.05% Tween, lOOnMNaCl, 10mM EDTA, ImM leupeptine, and ImM PMSF. The leupeptine and PMSF are added immediately prior to use from 100x stock solutions. The tissue was ground with a motor driven pestle. After extraction, 2M Tris pH7 was added to adjust pH to 8.0-8.5 then centrifuged at 12,000 RPM in a Beckman microfuge 12 (10 minutes at and the supernatant saved for enzyme linked immunosorbent assay ("ELISA").

ELISA techniques as a general tool is described by M. F. Clark et al in Methods in Enzvmologv 118:742-766 (1986), incorporated by reference.

An ELISA for the Bt toxin was developed using standard procedures and used to analyze transgenic plant material for expression of Bt sequences. For this procedure, an ELISA plate is pretreated with ethanol and affinitypurified rabbit anti-Bt antiserum (50 ul) at a 30 concentraction of 3 ug/ml in borate-buffered saline (see below) is added to the plate. This was allowed to incubate overnight at 40C. Antiserum was produced in response to.

immunizing rabbits with gradient-purified Bt crystals [Ang, B.J. Nickerson, Appl. Environ. Microbiol.

36: 625-626 (1978)], incorporated herein by reference, -46- 1 solubilized with sodium dodecyl sulfate and washed with ELISA Wash Buffer (see below). It was then treated for 1 hour at room temperature with Blocking Buffer (see below) washed with ELISA Wash Buffer. Plant extract was added in an amount to give 50 ug of protein (this is typically ca. 5 microliters of extract). Leaf extraction buffer as protein is determined by the Bradford method [Bradford, Anal. Biochem. 72:248 (1976) incorporated herein by reference] using a commercially available kit obtained from Bio-Rad, Richmond, California. If dilution of the leaf extract is necessary, ELISA Diluent (see below)] is used. Allow this to incubate overnight at 4C. After a wash with ELISA Wash Buffer, 50 ul affinitypurified goat anti-Bt antiserum is added at a concentration of 3 ug/ml protein in ELISA Diluent. This is allowed to incubate for 1 hour at 37'C, then washed with ELISA Wash Buffer. 50 ul rabbit anti-goat antibody bound to alkaline phosphatase [commercially available from Sigma Chemicals, St. Louis, Mo.] is diluted 1:500 in ELISA Diluent and allowed to incubate for 1 hour at 37*C, then washed with ELISA Wash Buffer. 50 microliters substrate [0.6 mg/ml p-nitrophenyl phosphate in ELISA Substrate Buffer (see below) are added and incubated for 30 minutes at room temperature. Reaction is terminated by adding microliters of 3 M NaOH. Absorbance is read at 405 nm in modified ELISA reader [Hewlett Packard, Stanford, Ca.].

Plant tissue transformed with the pCIBl0/35SBt(BclI) when assayed using this ELISA procedure showed a positive reaction, indicating expression of the Bt gene.

EPBS fELISA Phosphate Buffered Saline) mM NaPhosphate: Na 2

HPO

4 4.68 grams/4 liters NaH 2

PO

4 .H20 0.976 grams/4 liters 140 mM NaCl NaC1 32.7 grams/4 liters -47pH should be approximately 7.4 Baorate Buffered Saline 100 mM Boric acid mM Na Bor~te mM NaCi Adjust pH to 8.4 -8.5 with HMi or NaOH as needed.

ELIS Blcking Buffer ;M EPES,

BSA

0.02% Na azide ELISA Wash Buffer Tris-HCl pH 0.05% Tween 0.02% Na Azide -48- 1 ELISA Diluent In EPBS: 0.05% Tween 1% BSA 0.02% Na Azide ELISA Substrate Buffer In 500 mls, 48 ml Diethanolamine, 24.5 mg MgCl 2 adjust to pH 9.8 with HC1.

ELISA Substrate mg p-nitrophenyl phosphate in 25 ml Substrate Buffer.

For bioassays, cell suspensions from antibioticresistant cell cultures obtained from transformations with these Agrobacteria were initiated. Suspensions were grown in medium supplemented with G418 20 and subcultured into fresh antibiotic-containing medium on 7-10 day intervals. Samples of these cultures were then used in bioassays to test for toxicity to lepidopterous insects. Twenty ml aliquots of these cultures were allowed to settle (cell volume 3-4ml), 25 and resuspended in medium lacking antibiotics. Suspensions were then allowed to grow for an additional two days in this medium to deplete the cells of any residual antibiotic. Two circles of wet Whatman 2.3 cm filter paper were placed in the .bottom of a 3/4 oz portion cup.

A layer of transformed suspension culture cells 0.2 cm S* deep was placed onto the filter paper disk. A newlyhatched Manduca sexta or Heliothis virescens larva was placed into each portion cup. Controls were made up of larvae fed on non-transformed suspension culture cells.

Discs were replenished on 2-day intervals or as needed.

-49- 1 Manduca larvae generally require more plant material.

The growth rate and mortality of the larvae feeding on transformed cells compared with the growth rate of larvae feeding on untransformed cells was scored after 5 days, and clearly affirmed the toxicity of the BT gene product in transformed cotton cells.

EXAMPLE Heliothis virescenp eggs laid on sheets of cheesecloth are obtained from the Tobacco Insect Control Laboratory at North Carolina State University, Raleigh, North Carolina. The cheesecloth sheets are transferred to a large covered glass beaker and incubated at 29 degrees,C with wet paper towels to maintain humidity. The eggs hatched within three days. As soon as possible after hatching, the larvae (one larva per cup) are transferred to covered 3/4 oz. plastic cups. Each cup contains cotton leaf discs. Larvae are transferred using a fine 20 bristle paint brush.

Leaf discs one centimeter in diameter are punched from leaves of cotton plants and placed on a circle of wet filter paper in the cup with the larva. At least 6- 10 leaf discs, representing both young and old leaves, 25 are tested from each plant. Leaf discs are replaced at two-day intervals, or as necessary to feed the larvae.

Growth rates (size or combined weight of all replica worms] and mortality of larvae feeding on leaves of transformed plants are compared with those of larva 30 feeding on untransformed cotton leaves.

Larvae feeding on discs of cotton transformed with pCIBlO10/35SB5(Bcll) show a decrease in growth rate and increase in mortality compared with controls.

1 It was observed that a certain number of our regenerated plants appeared to have acquired genetically heritable phenotypic variations as a consequence of the process of regeneration. This variation is known as somaclonal variation. The following examples illustrate how somaclonal variation as a consequence of our regeneration procedure has been used to introduce commercially useful new traits into cotton varieties.

EXAMPLE-16 Cotton Reqenerants Tolerant to Fungal Pathoaens The procedure of Example 1 was followed, and regenerated cotton plants obtained of the variety and SJ4 were hardened and placed in the soil. These plants were self-pollinated and the seed, representing the Fl generation, collected.

To obtain regenerants (somaclonal variants) more tolerant to Verticil the Fl generation was planted 20 in a Veticiliu infested field for progeny row analysis.

Seed of the varieties SJ4 and SJ5 were planted in the field as controls. Somaclonal variants more tolerant than the parental varieties to the Verticilli fungus were identified in a few of the progeny rows by assessing overall plant vigor, yield, and the absence of foliar symtoms 'associated with the disease. FIG. 33 shows the progeny rows of regenerants planted in a Verticj ium infested field. FIG. 34 shows a Verticilliu tolerant somaclonal variant of variety SJ4. This 30 improvement in tolerance to the fungal pathogen was found to be genetically stable and passed on to subsequent generations.

-51- 1 EXAMPLE 17 Cotton Regenerants with altered arowth habits The procedure of Example 13 was followed except that, rather than planting in disease-infested soil, the Fl generation was planted in a cotton breeding nursery.

The overall growth habit of the F1 regenerated progeny was compared to that of the control varieties. Somaclonal variants were identified which were more uniform in growth habit and shorter in stature than the parental variety. One SJ5 regenerant, identified in our trials as Phy 6, was 20% shorter in stature than the parental variety. This kind of growth habit is desireable in cotton grown under narrow row (30" row spacing) cultural conditions. These traits were found to be genetically stable and passed on to subsequent generations.

EXAMPLE -18 2 0 Cotton recenerants with moroved fiber traits :The procedure of Example 13 was followed except that the F1 progeny of regenerants were planted in a cotton breeding nursery and allowed to set fruit. When the bolls were mature, the cotton was harvested and subjected to an analysis of several fiber quality traits including length, uniformity, tensile strength, elasticity, and micronaire. Somaclonal variants were identified which were improved significantly over the parental variety in one or more of these traits. Representative data from F2 progeny (cell pollination of the Fl) are included in the following Table 1. Values marked with an asterisk represent improvements in SJ5 regenerants which are statistically significant and have been found to breed true in subsequent generations.

-52- 1 Table I Fiber ronerties Variety Length Uniformity Tensile Elasticity Micronaire -r.xlf .index-, Stre.ngth_____ 1.13 48.7 24.7 6.8 4.27 3SP16 1.27* 51.2 24.6 8.0* 4.10* 3SP20 1.28* 53.1* 23.1 7.6* 4.13* 5SPlO 1.11 53.2* 25.7* 6.2 4.55 5SP17 1.18, 51.7 26.7* 7.1 4.43 Cotton-reoenerants with improved yield The procibdure of Example 13 was followed except that the Fl progeny of regenerants of the variety SJ4 were planted in replicated yield trials along with nonregdnerated controls. One variant, which exhibited a moeuniform growth habit and more vioosgrowth hbt yielded 4% more cotton than the parental variety in the sam trial. The data are given in Table 2 below.

Tal 2.

Variety or XYield per R Yield increase Corantrolt(l! b/A SJ4 Cnrl28.0 3049 Phy 4 29.1 3169 *This differencd was significant at the 95% confidence 9: level.

A 4% increase in yield would represent a return Of almost $20 per acre to the average cotton grower in -53- 1 California, where over one million acres of cotton are grown annually.

EXAMPLE Cotton Reenerants tolerant to a herbicide. (kanamycin) Suspension cultures of the cotton variety B1644 were developed according to the method of Example Suspension cultures were then plated onto an agar medium as described in Example 6, but supplemented, with the herbicide (antibiotic) kanamycin (25mg/1). Most of the cells in the population died, but a few (1 to were tolerant and survived. These were selectively subcultured onto agar-solidified media supplemented with increasing concentrations of kanamycin, until the final concentration reached 50mg/l. Embryos were then developed from this callus, and those resistant embryos were germinated into kanamycin resistant plants.

54- FORMULA I to 20 O 40 .50 drTAACA=C ToooTC.W ATTOATAYTTT wmmAATT OTTOCACMY OTOCATTTTT 70 so 90 1o0 ISO1 120 TCATAAO3ATO AOTCATATUT TTAAATTOT ACTAATOAAA AACACTATIf A TACATAATG4 1130 1 40 ISO 160 370 too AATTOOTATC ?TAATAAAAG AGATOGAOOIT AACrrATOA TAACAATCCO AACATCAATa Ito0 20 210 220 230 240 AATCSCATTCC TTATAATTUOT ??AAOTAAcC CTOAACTAO4 ACITATTAAOT GOAGAAAGAA 260 270 *230 290 200 ?AOAAACTOG TTACACCZ AYCOATAYIT CCTTGTtrCT AACOCAATTT CTTTTCGTG 310 320 320 340 3S0 360 AAflYTDnCC CGUTOCTOGA TTTOTOTTAG OACTACITTGA IATAATATOO aGAATTTTTO 370 380 390 400 410 420 OTCCCTCTCA ATO5OAcorA TTTCCTUTAC AAATTaAACA GTTAATTAAC. CAAAOAATAOI 430 440 430 460 470 As(, AAOAATTCOC TAGOAACCAA aCCATTTCTA GATTADAADD ACTAAZCAAT CTTTATCAAA S. *S *5 S

S

*5 *555 *5

S

S.

C

*5*5 S S S. S 5* *5S*

S.

S C

S

55 5 S S 5. 5* 20 490 TTTACOCA3A

AGATCCTAT

6 10

CAOTYCAAAA

&1/0

?ATCAOTTTT

730

TCAATAOTCO

7Y0

OCTOOTACAA

850

ATAATCAATT

910

ACTATOATAG

970

CAAACCCAOT

1030 OAAO TAT TAG 1c,90

CTCATAGAO

1130

CODCCAGA

320

CAATTDTTOC

t0o S10 Z:0 31.0 540 ATCTTTTADA OAOTOGGAAD CAMATCCTAC ?AATCCADCA TTAAGAGAAD 540 570 10 590t &CIO TCAATTCAAT OACAIGAACA OTOCCCTAC AACCOCTATT CCTCTrTTTO 620 &30 ;,g0 &SO 660 TTATCAAGTT CCTCTTTTAT CADTATATOT TCAAMATCA AAYTTACATT &90 690 700 710 GASAGATOTT TCACITGTTT OACAAAGOTO OOOATTTGAT OCCA=GAMT 740 70 760 770 780 TTATAATOAT TYAACTAGOC TTATTOCCAA CYATACACAT CATOCTOTAC 800 1110 620 330 340 TACCGATTA GAACOTOTAT OGGGACCOGA TTCTABABAT TGGATAAGAT 360. 070 Soo 390 to TAOAAOAGAA TTAACACTAA. CTOTATTAOIA TftTCOTTTCT CTATTTCCOA 920 930 940 950 96(1 TAGAACCOTAT CCAATYCOAA CADTTTCCCA ATTAACAAGA OAAATTTATA 980 990 1000 sol0 102 0 ATTAGAAAAT TTTOATOOTA GTTTTCGAGO CTCGBCTCAD DOCATAGAAa 1040 10Sos GAGTCCACAT TTGATGGATA 2100 1110 AGAATATTAT TOGICAGDOC 1160 1170 ATTCACYTTT CCOCTATATO 2220 1=0 TCAACTAOOT CADGCCGTGT 1060

TACTTAACAD

1330

ATCAAATAAT

1110 OAACTATC100 1240

ATAOAACATT

1070

TATAACCATC

5130

OCCYTCTCCT

2290

AAATACAOCT

1=20

ATCOTCCACT

SOO*S

TATACOSATO

1140

OTAGOC;TTTT

CCACAACAAC

3240

TTATATAGAA

IVY0 120 OA=TrrTM TATA'00ATA 1330 1340 CTAT0GLAAC CyCCAAT 1390 1400 CTOAYOA AATAC2CCA= 1450 14&0 OATTAAO=C

TOTTTCAATO

1530 1520 OLADCYeTAT 0TTCTCTTGU 1S70

ISO*

CACAAATTAC

ACAAATACCT

6:0 1&40 TTAAAGOACC

AGGATTTACA

CAACCTAA AC;AAATAT 17SO 37,60 *ACOCTTCYAC

CACAAATTTA

auto 1820 COAATTTTTC AGCAACTATO 1290 130Q 1380 1320 AATAACAAC AATATCTOT ?TTOAWMO ACAOATTTO 1350 1310 1370 1300 TTOCCATcC CTOTATACAG MAAADCOA AOCT04ATT 1410, 1420 1430 1440 CAGAATAACA ACOTC=Ac ?ACCCAA0OA ITTADCMATC 1470 1400 1490 1z00 TTCGTTC-AG OCTTTAOSTAA TACTACOTA AOTATAATAA 1530 1540 1550 1560 ATACAYCOTA *TOCTUAATT ?AATAATATA ATICCTTC-AT 15-90 1400 1410 1620 TTAACAAAAT CTACTtATCT TOOCTCTOCA ACTYCTGTCO 118-0 1640 8470 14690 OUAGGAOATA TTCTTCGAAGOAACTTCACCT GOCCAGATTT 1110 1720 1730 8740 ACTOCACCAT TATCACAAAD ATATCOOOTA AMAATTCGCT 17707 4 1700 1790 to(") CAATTCCAT.A CATCAATTGA COCAACIACOT ATTAATCAGO 19:0 1940 ADTAUTODA GTAATTTACA sees* '00:4 so *fee

C."

ad.

3670

TAOCTTTTAC

I 930

ATCTCTYCAA

199Cs

IAACCTTTGA

2C'50

CTTTTCCAA

CCAATTIAOT

2170

AGAAAGTCAA

TIAGASUGAT

AACGAGGCOA

GCTATCCAAC

2410

ACCAATTAAG

l9go 1090 1900 TACTCCZTTT AACTTTTCAA ATGGATCAAG 1940 19090 TTCA09CAAT OAACTTTATA TAGATCO&AT ft000 :010 2020 OOCAGAATAT SATTTAGAAA GAGCACAAAA 2060 2070 2030 TCAAATCGGG TTAAAAACAG A1TTACOOA Ito 2130 2140 TOACTOYTTA TCTGATDAAT TTTOTCT03A :390 2190 2200 ACATOCCAAG CGACTTAUTO ATCAUCOGAA 2240 22=:0 12260 CAATAGAGAA CTABACCOTO OCYGMAOAOG =ZOO 2=10 TGACCTATTC AAAGA13AATT ACGTTACOCT 2:60 1,2-70 2310 OTATTTATAT CAAAAAATAO ATCAUTCOAA 2420 2430 2440 ACOGIATAYC OAAOAAUTC AAGACTTAGA CTCCOGAAGC TYTAGCTO 8930 39:0 TOTATTTACG *TTAADTOCTC 8970 191i0 IOAATTTCTT CCOOCAGAAG GDUUGTGAAT GAGCTOYTTA 2090 21300 TTATCATATT GATCAAGTAT 21t0 216M 1GAAAAAAAA GAATTGTCCO 20 TTTACTTCAA GATCCAAACT AAGTACGGAT ATTACCAT~d ATTGOOTACC TTOATSAOT 2390 2.40cC ATTAAAACC TATACCCOTT 2450 2460 AATCTATTA ATICOCTACA 2470 2400 2490 2500 =10 2520 ATOCCAAACA CGAAACAGTA AATOTOCCAO OTACCOGTTC CYTATGOCCG CTTTCAGCCC -56- 2530 2540 25W &0 27 CATAT 03mW-TOT OGCATCATT CATCATTT CTCCTOWA AlTTAT13TTO 2590 2400 2410 2620 2630* 2640 ATISTACAOA CTyTyAA GACAAOTOy TATOGTOAT ATTCAAGTT

AAOACGCAAO

2450; 1260 2670. 2690 2690o 2700 01TOOCCATOC AAOACTAGGA AATCTAOAAr TTCTCOARGA SAAACATTA

OTAOQOAO

27Wc 2720 2730 2740 2750 2760 CACYAOCTCG TOTGAAAAGA OCODAGAAAA AATOGAGAGA CAAACOTOAA

AAATTOGAAT

2770 2Y30 2790 2300' 2310 -820 GO0AA.ACAAA TATTGTTTAT AAAGADOCAA MOAATCTOT AOATUCTTTA

TTTUTAAACT

2930 "2940 20010 2360 27 CTCAATATOA TAGATTACAA OCGGATACCA ACATCOCOAT aATTCATOCCO

CADATAAAC

2890 2?00 2920 2920 2930 :940 CCO.TTCATAG CATTCOAGAA DCTTATCTGC CTGADC70TC TOTGATC0 OOTGTCAATb Y0z 2VA0 2970 .2980 2990 *4o CGGCTATTTT TGAAGAATTA GAAGGDCGTA"TTTTCTOC ATTCTCCCTA

TATCATOCOA

30~10 30:0 :00 3CS4 30s0 3080 CAAAGTCAT TAAAAAT~GT OATTTTAATA ATOCTAYC CTUCTCAAC

OTGAAAOC

3070 3000 30,00 ZIOO 3110 31:0 ATOTAGATOT AOAASAACAA AACAACCACC GTTCGGTCCT TOT.TTTCC CAAYOO0.AAo 31Z0 3240 ZISCe 320 '70 .*=too CAGAAGTOTC ACAAGAAGTT COTOTCTOTC COGOTCOTOO CT4AACCTT

CGIGICACAS

3190 =00o 31,0 W~ .3=0 :aC COTACAAGOA OATATCOA GAADCTTG'CG TAACCATTCA TOAGATCGAG

AACAATACAG

3:60 Z270 328 29 32."00 ACOAACTGAA OTTTACCAAC..TGTGTAGAAG ADCAACTATA TCCAAACAC

ACCOTAACOT

*.330 3:20 3330 3340 1.34 DTAATGATTA TACTOCOACT CAAGAAGAAT ATOAOOUTAC OTACACTTCT

CTACA

ACCCTATGAA ACCAATTCYT C0TACDC CTATAG C CCCAiG *~340 3440 3470 3460 3470 CGAAAAAUT ATGATCT OACGAGASAA TCT TATCAAC GACAOCATA00 349 3S* AATATT2 0 31.13 340 303670 3620 369f0 3700 3710 3720 GATTACTOAC TTGTATT6AC ACATAAATAA OOAAATTTTT ATATCAATAA

AAAACGGUCA

3730 3740 3730 S740 3770 3790 ICACTCTTAA AAGAATGATO TCCGTTTTTT CTATGATTTA ACOAGTOATA

TTTAAATGTT

-37- 3790 zoo 361 3820 S3s0 i840 TYTOOA AMOCTTTACT TAACCUDOTA CCOCCACATO CDCA7CAACT TAAA yarI u. ;5 360 3870 31160 360 3900 CACTACCCC AACTOTCAAA AAACOTTATr cTTTCTAAM AOCTAUCTACO ARADATOAC.

3910 39I0 3930 3940 3950 3940 LTTTYTTATO AATCIITCAA TTCAAOATOA ATTACAACTA TTTTCTGAAO

AOCYCITATCO

3970 3960 3990 4000 4010 4020 TCArTTAACC CCTTCTCTTT TCIZAAGAACT COCTAAMOAA TTABOTTTTU TAAAAAtOAAA 4030 4040 40-00 4040 4070 4090 ACOAAACTTT TCAGGAAATG AATTAOCTAC CATATOTAYC TOCCOCADIC AACOTACADC *4090 4100 4110 4120 4130 4140 OAGTOATTCT CCCTTCOAC TATOCAUTCA ATTACACOCC OCeACASCAC

TCTTATGAGT

4 1 '0 4160 4170 4150 4190 CCAGAAGGAC TCAATAAACO CTTTGATAAA AAADCOOTTO AATTTTTGAA ATATATTTTT 420 42 43) '4240 4:20 4260m AT GGAAAAGTAA ACTTTOTAAA ACATCAOCCA TtTCAAOTOC AGCACTCACC 420 400 49 43Clo 4310 4-.O 4270TAA 4250CTA 4290AOC ACOATTTTCC AACTACCOAA

ACATTIADCA

4 Z.10 4-:40 4ZZO 4 :*CATOTATATC CT503TCADO TOGTTOTOCA

CAAACTOCAD

*525 THE CLAIMS DEFINING THE INVENTION ARE AS FOLLOWS: 1. A method for transforming cotton which includes the steps of: providing a cotton explant; culturing the cotton explant in a first solid callus growth medium containing glucose as a carbon source from a period of time sufficient for phenolic secretion from the explant forming the callus to end and for undifferentiated callus to develop from the explant; transferring the callus at the end of phenolic secretions to a second solid callus growth medium containing sucrose as the carbon source; culturing the callus in the second solid callus growth medium from a period of item sufficient to allow development of embryogenetic callus providing at least one embryo; transferring the embryo to a plant germination medium; 15 wherein the transformation involves exposing the explant during regeneration to an Agrobacterium vector containing an expressible gene sequence foreign to cotton for a time sufficient for the gene to transfer to the plant cells.

2. A method according to claim 1 which further includes the step of exposing 20 the transformed plant material to an antibiotic which is toxic to the agrobacterium for a time sufficient to kill the agrobacterium.

3. A method claimed in claim 1 in which the first and second solid callus ,growth medium comprises a Murashige and Skoog medium supplemented with 1 to 25 10 mg/l naphthaleneacetic acid.

4. A method as claimed in claim 2 in which the antibiotic toxic to the Agrobacterium is cefotaxime.

5. Cotton regenerants exhibiting improved fiber quality traits of at least greater fiber length, tensile strength, elasticity on lower micronaire as compared to the parental variety, wherein said regenerants are produced by a method according to any one of claims 1 to 4.

6. Cotton plants transformed to exhibit herbicide tolerance, wherein said plants are produced by a method according to any one of claims 1 to 4.

V'-ljI

Claims (9)

1. 7. Cotton regenerants transformed to exhibit herbicide tolerance, wherein said regenerants are produced by a method according to any one of claims 1 to 4.
2. 8. Cotton regenerants exhibiting increased tolerance to fungal pathogens, wherein said regenerants are produced by a method according to any one of claims 1 to 4.
3. 9. A vector for conferring antibiotic resistance to a cotton plant which comprises two T-DNA right border sequences from A. Tumefaciens capable of integration with the plant genome flanking a chimeric gene capable of expression in cotton and of conferring resistance to the antibiotics Kanamycin and G418. 15 10. A vector as claimed in claim 9 in which the chimeric gene includes in sequence a napoline synthetase promoter, a neomycin phosphotransferase II coding regions from Tn5 and the terminator from the herpes simplex virus thimidine kinase gene. 20 11. A cotton cell including a vector, said vector including: integration sequences derived from the T region of the Ti plasmid of ;Agrobacterium tumefaciens for integrating into the genome of cotton plants; a cotton plant expressible promoter for promoting transcription in cotton S. plants; 25 a DNA border sequence encoding a selectable marker wherein the selectable marker is a herbicide resistance gene; and a cotton plant expressible termination signal for terminating transcription in cotton plants.
4. 12. A cotton cell according to claim 11 herein the herbicide resistance is selected from the group consisting of resistance to glyphosate and resistance to hygromycin.
5. 13. A cotton cell according to claim 11 further including a DNA sequence for conferring pest resistance wherein the pest resistance is selected from the group consisting of resistance to Manduca sexta and resistance to Heliothis virescens. J I
6. 14. A cotton cell according to claim 13 wherein the DNA encodes a gene for protoxin.
7. 15. A process for transforming cotton including the steps of: introducing to the genome of a cotton cell a gene sequence foreign to the cotton cell from a vector including: an integration sequence including two right border sequences derived from the T region of the Ti plasmid of Agrobacterium tumefaciens for integrating into the genome of the cotton cell; a cotton plant expressible promoter for promoting transcription in the cotton cell; a DNA sequence encoding a selectable marker wherein the selectable marker contains a gene sequence foreign to the cotton cell; 15 a cotton plant expressible termination signal for terminating transcription in the cotton cell; and (ii) developing a transformed cotton plant from said cotton cell.
8. 16. A process for the transformation of cotton which includes the steps of: S: 20 introducing to the genome of a cotton cell a gene sequence foreign to the cotton cell from a vector including: integration sequence including the right border of the T region of the Ti plasmid of Agrobacterium tumefaciens; a cotton plant expressible promoter for promoting 25 transcription in the cotton cell; a DNA sequence encoding a selectable marker which is a herbicide resistance gene sequence foreign to the cotton cell; a cotton plant expressible termination signal for terminating transcription in the cotton cell; and (ii) developing a transformed cotton plant from the cotton cell.
9. 17. A process for the transformation of cotton which includes the steps of: introducing to the genome of a cotton cell a gene sequence foreign to the cotton cell from a vector including: integration sequence including two right border sequences of the T region of the Ti plasmid of Agrobacterium tumefaciens; II a cotton plant expressible promoter for promoting transcription in the cotton cell; a DNA sequence encoding a selectable marker which contains a protoxin gene from B. thuringiensis; a cotton plant expressible termination signal for terminating transcription in the cotton cell; and (ii) developing a transformed cotton plant from the cotton cell. Dated this twenty-sixth day of May 1999. MYCOGEN CORPORATION Patent Attorneys for the Applicant: F B RICE CO a a a. a a a a a.. a.* a.* a a a a.* a a a a a a a *a a. a a a. K' to There are provided methods for regenerating cotton by tissue and suspension culture starting with explants which are the hypocotyl, cotyledon or immature embryos. This also taught methods to transform cotton and improve cotton by selective growth. 0 1*.