AU686231B2 - In vitro assay to detect inhibitors of protein and/or MRNA biosynthesis - Google Patents

In vitro assay to detect inhibitors of protein and/or MRNA biosynthesis Download PDF

Info

Publication number
AU686231B2
AU686231B2 AU77023/94A AU7702394A AU686231B2 AU 686231 B2 AU686231 B2 AU 686231B2 AU 77023/94 A AU77023/94 A AU 77023/94A AU 7702394 A AU7702394 A AU 7702394A AU 686231 B2 AU686231 B2 AU 686231B2
Authority
AU
Australia
Prior art keywords
protein
document
reporter enzyme
mixture
synthesis
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
AU77023/94A
Other versions
AU7702394A (en
Inventor
Timothy Robert Hawkes
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Syngenta Ltd
Original Assignee
Zeneca Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Zeneca Ltd filed Critical Zeneca Ltd
Publication of AU7702394A publication Critical patent/AU7702394A/en
Application granted granted Critical
Publication of AU686231B2 publication Critical patent/AU686231B2/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6897Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids involving reporter genes operably linked to promoters
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/18Testing for antimicrobial activity of a material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/25Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving enzymes not classifiable in groups C12Q1/26 - C12Q1/66

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Toxicology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Agricultural Chemicals And Associated Chemicals (AREA)
  • Enzymes And Modification Thereof (AREA)

Description

WO 95/09925 PCT/G 194/02088 IN VITRO ASSAY TO DETECT INHIBITORS OF PROTEIN AND/OR MRNA BIOSYNTHESIS The present invention relates to an in vitro assay for detecting inhibitors of protein and/or mRNA biosynthesis, to the use of this assay in the discovery of novel antibiotics and herbicides and in determining their mode of action and to biologically active inhibitors of protein, particularly bacterial protein, and/or mRNA biosynthesis and herbicides obtained thereby.
A non-radiochemical method for studying, in vitro, the transcription and translation of DNA was first described by G. Zubay in, for example, Ann. Rev. Genet., (1973), 2, 267-287. Modifications to this method were later described by J. Collins in Gene, (1979), 29-42.
These methoos were employed in research for study purposes.
Inhibition of protein and/or mRNA biosynthesis is an interesting biological effect which can have potential applications in, for example, the antibiotic and, as the applicants have found, the agrochemical and in particular the herbicidal fields. However screens employed for detecting inhibition of protein biosynthesis are low throughput and radiometric and hence unsuitable for the large scale screening of compounds necessary to discover useful biological activity or for detecting leads in these areas.
The applicants have developed a non-radiometric screen for the high throughput screening of inhibitors of protein and/or mRNA biosynthesis.
According to one aspect of the present invention there is provided^ method of detecting compounds having activity as inhibitors of pr in and/or mRNA biosynthesis, which method comprises incubatinga ixture of reagents suitable for the DNA-directed synthesis in vit of a functional reporter enzyme at a detectable rate, both alone a control and in the presence of a test compound, detecting the ctional reporter enzyme produced in the control and test mixt s and comparing the results.
The test is suitably carrie dut on a miicrotitre scale.
Conditions such as the incubation period for protein synthesis, time of assay, temperature d reagent concentrations etc., can be adapted to ensure that dete able quantities of reporter enzyme are generated in the control te within these time periods most convenient for high throughput scree g. For instance, an incubation period for protein synthesis is i dltably less than about 2 hours and preferably about 1 hour.
1a According to one aspect of the present invention there is provided a method of detecting compounds having activity as inhibitors of protein and/or mRNA biosynthesis which are potertially useful as herbicides, which method comprises incubating a mixture of reagents suitable for the synthesis of a functional reporter enzyme at a detectable rate in vitro, both alone as a control and in the presence of a test compound, said mixture comprising: 1) an amino acid mixture; 2) a plasmid DNA encoding the functional reporter enzyme; 3) an S30 extract from a prokaryotic organism lacking the functional reporter enzyme activity; and 4) a low molecular weight compound mix comprising the reagents required for protein synthesis in vitro and; 5) magnesium ion;
S
detecting the functional reporter enzyme produced in the control and test mixtures and comparing the results.
a further aspect the present invention provides a method of determining the mode of action of a herbicide compound, the method comprising incubating a mixture of reagents suitable for the synthesis of a functional reporter enzyme at a detectable rate in vitro, both alone as a control and in the presence of a test compound, said mixture ,omprising: 1) an amino acid rixture; 2) a plasmid DNA encoding the functional reporter enzyme; 3) an S30 extract from a prokaryotic organism lacking the functional reporter enzyme activity; and 4) a low molecular weight compound mix comprising the reagents required for protein synthesis in vitro and; magnesium ion; detecting the functional reporter enzyme produced in the control and test mixtures and comparing the results.
The test is suitably carried out on a microtitre scale.
C .NWO YLIE VARIOUS NOEL P77023 DOC CrWINWORDKYLIE ;VRIOUS NOO P772 DOC
I
lb Conditions such as the incubation period for protein synthesis, time of assay, temperature and reagent concentrations etc., can be adapted to ensure that detectable quantities of reporter enzyme are generated in the control test within these time periods most convenient for high throughput screening. For instance, an incubation period for protein synthesis is suitably less than about 2 hours and preferably about 1 hour.
J
*I*
o* C\ WINWORDiKYLUEVARIUUS'NODELP 77023 DOC I L II_ WO 95/09925 PC"I/GU 1194/02088 2 Suitable reporter enzymes are those which can be assayed for example by addition of chromogenic or fluorogenic substrates. These will include p-galactosidase and P-glucuronidase. Alternatively firefly luciferase could be used to generate light.
The mode of detection of the reporter enzyme will depend upon the particular enzyme chosen. For example colorimetric or light generation assay techniques can be employed depending upon the enzyme. Assay chemicals are added either intially to the reaction mixture and/or at suitable points during the method.
A preferred reaction for use in the method of the invention is based upon that described by G. Zubay supra and further modified by J. Collins supra. A mixture of reagents suitable for enzyme synthesis comprises the following components: 1) an amino acid mixture; 2) a plasmid DNA encoding the reporter enzyme; 3) an S30 extract from a prokaryotic organism lacking the said reporter enzyme activity; and 4) a low molecular weight compound mix comprising the reagents required for protein synthesis in vitro; and magnesium ion.
The amino acid mixture is suitably a mixture of the 20 protein L-amino acids in equivalent proportions. However, the concentrations of individual amino acids in the mixture can be varied (for example, to investigate whether an inhibitor is likely to act by inhibiting any of the aminoacyltRNA synthetases). In such experiments, the concentrations of individual amino acids are varied and it is observed whether there is any antidoting effect through increasing the concentration of a sa-)ific amino acid. This can be taken to indicate that the particular inhibitor is most likely to be acting as a competitive inhibitor of the corresponding aminoacyl-tRNA synthetase.
The concentration of amino acids is varied suitably from 0.01 to We have found that a reduction of the concentration of amino acid mixture relative to that described by G. Zubay supra is preferred in order to maximise the sensitivity of the test for the detection of protein biosynthesis inhibitors and, in particular, inhibitors of the aminoacyltRNA synthetases.
-I i I_ WO 95/09925 P'("'1/G1194/02088 The plasmid DNA is suitably any convenient plasmid DNA carrying the lac Z gene, such as that commercially available from Promega.
Suitable S30 extracts are similar to those described by G. Zubay supra, and may include commercially available extracts such as those sold by Promega. A method of preparing such an extract is exemplified hereinafter.
The low molecular weight compound mix can contain nucleosides, salts, buffers, solvents etc., as would be apparent to the biochemist. An example of a suitable low molecular weight compound mix is given hereinafter.
The optimum amount of magnesium ion for the protein synthesising reaction needs to be established and standardised for each new batch of E. coli or S30 extract and of low molecular weight compound mix which is prepared. (Having established the amount of magnesium ion necessary to produce the most P-D-galactosidase in initial controls, and which is used in a preferred embodiment of the present invention, then this amount is used for all subsequent inhibitor testing until either all of the extract or the low molecular weight component mix is used up). A convenient source of magnesium ion is magnesium acetate. In practice, the optimum amount is usually found somewhere between 5 and 30 mM of added magnesium acetate concentration added to the protein synthesising reaction).
In a preferred embodiment, the present invention provides a colorimetric in vitro method for detecting inhibitors of transcription (RNA polymerase) and translation (protein synthesis) in an E. coli extract, which method comprises supplementing the E. coli extract with tRNA and cofactors required for biosynthesis, priming the mixture with plasmid DNA carrying the lac Z gene, allowing the primed mixture to synthesize P-D-galactosidase, quantitatively Jetecting the amount of enzyme made, and determining whether the presence of a potential inhibitor has reduced the P-D-galactosidase activity relative to controls.
The E. coli strain chosen for making the extract is one which lacks P-D-galactosidase the readily available lac deleted strain MC1061).
The cofactors include the amino acid mixture and the low molecular weight compound mix comprising the basic chemicals required for protein synthesis in vitro as described above.
The p-D-galactosidase is suitably detected and quantitated by adding a chromogenic substrate such as o-nitrophenyl p-D-galactoside. Inhibitors of L I II WO 95/09925 PC"1T/G(; 94/02088 4 protein synthesis are detected by measuring the reduction in yellow colour absorbin' 410 nm formed in microtitre wells which contain inhibitor.
Control experiments using p-D-galactosidase (commercially available from Sigma (UK) Ltd) are then necessary to distinguish between genuine inhibitors of mRNA or protein synthesis and molecules which are merely inhibitors of p-D-galactosidase itself.
Inhibitors of bacterial RNA polymerase and/or protein biosynthesis include many antibiotics and, because of the close similarity between the protein synthesis machinery of chloroplasts and of bacteria, also herbicides. TLe assay therefore provides a novel means of screening for compounds potentially useful as herbicides or antibiotics or as a means of providing in vitro active leads around which a programme of analogue synthesis could then lead to compounds useful as antibiotics or herbicides.
Thus, according to another aspect of the present invention, there is provided a method of screening for compounds potentially useful herbicides, which method comprises incubating a mixture of reagents suitable for the synthesis of a functional reporter enzyme at a detectable rate in vitro, both alone as a control, and in the presence of a test compound, detecting the reporter enzyme produced in the control and test mixtures and comparing the results.
The assay also useful as an indicator of herbicide and/or antibiotic mode of action. The test will indicate whether a lead with an unknown mode of action is or is not an inhibitor of bacterial protein biosynthesis. In many cases, it will be possible to use the test to further narrow down the site of action to a more specific site within transcription/translation.
In particular, it is possible to diagnose whether compounds act as specific inhibitors of any one of the aminoacyl-tRNA synthetases.
Inhibitors of these are particularly valuable having use as both antibiotics and herbicides such. as those described in copending International Patent Publication No. W093/19599. So, for example, competitive inhibitors of isoleucyl-tRNA synthetase can be readily identified through the specific ability of isoleucine to antagonise the inhibition observed in this test.
Further according to the present invention there is provided a biologically active inhibitor of bacterial protein and/or mRNA biosynthesis (the transcription and translation of a functional protein gene product) -p _I I II WO 95/09925 PCT/GB94/02088 5 identified using the method according to the present invention.
The invention also comprises herbicidal compounds consisting of, or derived from such inhibitors, but excluding those of International Patent Publication No. W093/19599 of general formula or (IA) or (IB) where Y 2 represents a group of sub-formula (IC) or (ID or (IE) and wherein R is a group CO-XR 3 wherein X is 0 or S and R 3 is hydrogen or an agrochemically acceptable ester-forming radical; or R is a group -R 4 wherein R is an optionally substituted aryl or heterocyclic group; or R 2 is a group
CO-NR
5
R
6 wherein R 5 and R 6 are the same or different and each represent an agrochemically acceptable amide-forming radical; stereoisomers of the compounds of formula (IA) and (IB) and salts of the compound of formula (IA) and (IB) wherein R 2 is COXR 3 X is 0 and R 3 is hydrogen.
The following Examples illustrate the method of the present invention.
EXAMPLE 1 The following were prepared: 1. Low molecular weight compo.id mix (reagents generally of the purest grades available)- Dissolve Tris (tris(hydroxymethyl)aminomethane) in H 2 0 and mix the following reagents in the order listed below.
440mM Tris buffer 13.7mM DL-dithiothreitol 9.50mM Adenosine 5'-triphosphate (disodium salt from Equine 5.50mM 5.50mM 5.50mM 0.21M 0.375ml/ml 0.lml of stock/ml 2.50 mM 6 2 4 41 of stock/ml muscle) Cytideine 5'-triphosphate (tris salt, type VI) Guanosine 5'-triphosphate (tris salt, type VI) Uridine 5'-triphosphate (tris salt, type VI) Phosphoenolpyruvate (mono(cyclohexylammonium)salt) 40% Polyethylene glycol 6000 Folinic acid (freshly prepared 2.7 mg/ml stock solution in water) Adenosine 3'-5'-cyclic monophosphate Transfer ribonucleic acid (type XXI from E. coli, strain W available from Sigma (UK) Ltd, lyophilized). Freshly made up as a 17.4mg/ml stock solution in water Ammonium acetate 0.28 M -I I I I WO 95/09925 B94/02088 -6- 0.56 M Potassiim acetate 19 mM Calcium acetate The solution was made up in the order above and finally adjusted to pH 8.2 with 5M potassium hydroxide.
2. Amino Acid Mixture This was a mixture of the 20 protein L-amino acids at 2.5mM of each.
3. Lac-Z plasmid DNA DNA pGem carrying the gene encoding p-D-galactosidase (commercially available from Promega) 4. Magnesium acetate Purest grade available (stock solution approximately S30 extract The preparation of this is similar to that described by G. Zubay supra and is described in greater detail below.
6. Growth of bacterial cells.
The bacterial strain E. coli MC1061 was grown in a rich medium (as described by G. Zubay supra) at 28 0 C in fermenters run at a working volume of 141. Samples were removed throughout the fermentation to measure the O.D. 550nm.
After 11.5 hours the cells were harvested. The culture temperature was reduced to 20 0 C and the first six litres harvested into pre-chilled centrifuge pots. The remaining culture was harvested into flasks and kept on ice. Centrifugation of both batches was carried out in a Sorvall GS3 6x500 rotor at 5000 rpm and 5°C for 20 minutes. Cell pellets were snap frozen in liquid nitrogen, weighed and stored at -80 0
C.
7. Preparation of broken cell (530) extract.
The chemicals used were generally of ANALAR (or supplier's equivalent) quality. The buffer used throughout the following preparation is 10mM Trisacetate pH 8.2 containing 14mM magnesium acetate, 60mM potassium acetate and 1mM DL-dithiothreitol.
of the E. coli cell pellets prepared above was resuspended in 500m1 of buffer also containing 7mM 2-mercaptoethanol. The cell suspension was centrifuged at 12000 rpm and 4 0 C for 5 minutes in a Sorvall GSA 6x250 rotor. The supernatant was discarded and the above resuspension and centrifugation steps repeated. The pellet was resuspended in 1.25ml of buffer per gram of cells. The cells were lysed by one pass through a French _I 1~_ WO 95/09925 P CT/GB94/02088 7 Pressure cell at 8000psi (5.5x104kPa). Immediately 10 of 0.1M DTT (dithiothreitol) was added per ml of extract. The extract was centrifuged at 18000 rpm and 4 0 C for 30 minutes in a Sorvall 8x50 rotor. 80% of the supernatant is carefully removed and the previous centrifugation and extract removal steps repeated.
A solution of 0.29M Tris buffer containing 9.2mM magnesium acetate, 13.4mM adenosine 5'-triphosphate (disodium salt from Equine muscle), phosphoenolpyruvate (mono(cyclohexylammonium)salt), 4.4mM DLdithiothreitol, 4.3 units of fresh pyruvate kinase (EC 2.7.1.40, Sigma type III from rabbit muscle) and 0.132 mM of each of the 20 protein L-amino acids was prepared. The solution was adjusted to pH 8.2 and then added to the above supernatant with 0.3 ml being added per ml of final supernatant.
This is then left to incubate in a slow shaking water bath for 80 minutes at 37 0 C in the dark.
Approximately 20m1 samples of the above extract are dialysed against four changes (each 11) of cold buffer at 4 0 C over the course of 4 hours.
The product is the S30 extract, which was then frozen and stored as beads in liquid nitrogen. Aliquots were then thawed and used as required.
8. Inhibitors Test Compounds 1-3 and some known antibiotics were dissolved in appropriate concentrations up to 100ppm in 4% DMSO (dimethyl sulfoxide) or H 2 0. Blank solutions were used as appropriate. Control experiments indicate that DMSO did not interfere at 4% in this solution 1% in the protein synthesis reaction).
9. Substrate solution 1.82mM o-nitrophenyl P-D-galactopyranoside in 0.1M phosphate buffer (sodium salt) at pH 7.3 containing 0.1 M 2-mercaptoethanol.
8. Sodium carbonate M sodium carbonate Method Using the above solutions, assays were carried out as described below.
Protein synthesising reaction Potential inhibitors, the amino acid mixture, the S30 extract, plasmid DNA and the low molecular weight compound mix were mixed together in the well of a 96 well microtiter plate in the following proportions: l041 low molecular weight component mix
I--
WO 95/09925 PCT/GB94/02088 -8 2g1 amino acid mixture 1.5-3.0 gg lac Z plasmid DNA 17p1 S30 extract 10~1 of inhibitor (or, in controls, 10 il of water, or 4% DMSO in H 2 0, according to what the inhibitors are dissolved in).
Magnesium acetate appropriate amount determined as described above.
Protein synthesisin reaction Each well was made up to 42 j1 volume with H 2 0. A reaction was started by the final addition of the low molecular weight compound mix and mixing, or by pre-mixing all the components at ice temperature and starting the reaction by raising the temperature to 37 0 C. The mixture was allowed to react at room temperature for an hour.
Enzyme assay A solution containing 200 jl o-nitrophenyl-p-D-galactoside in buffer was then added to initiate the assay of the enzyme synthesised. After 1-3 hours, 100 l1 sodium carbonate solution was added and the absorbance measured, at 410 nm, referenced against 570 nm, using a Dynatech 7000 microtitre plate reader.
Results The results are shown in Table 1. In the Table:i) Concentrations of compounds refer to their final concentrations in the initial protein synthesis reaction mixture.
ii) Percent inhibition is calculated with reference to control values (absorbance obtained in assays containing no inhibitor) and to blank values (background absorbance obtained in assays containing no plasmid DNA).
Percent Inhibition 1 sample value-blank value x 100 control value-blank value TABLE I Inhibitor Concentration(p.M) Inhibition Chloramphenicol 48 100 Streptomycin 48 66 Compound 1 48 100 1 22 WO 95/09925 I'C/7I;9.1(/0208H 9- Compound 2 24 43 Compound 3 2.3 18 CONTROL EXAMPLE The purpose of the control experiments is to check that the inhibitors discovered really are inhibitors of protein biosynthesis and not simply inhibitors of p-D-galactosidase.
When testing potential inhibitors at a typical test rate of 20-40 ppm, most of the "hits" detected are likely to be inhibitors of transcription or translation. Occasionally, apparent hits result from compounds being direct inhibitors of p-D-galactosidase. Such inhibitors can easily be detected by running the test using p-D-galactosidase enzyme purchased from Sigma (UK) Ltd (Sigma grade VI from E. coli) in place of the initial mixture used in the protein synthesis reaction described above. (The appropriate amount of diluted enzyme can readily determined by experiment I: as that required to produce an absorbance change at 410nm of around 0.5-1.0 over the course of an hour).
EXAMPLE 2 The assay may also be used as a diagnostic test to determine the exact mode of action of such inhibitors as described above. In this example the inhibition of Compound No. 2 is shown to be reversed by L-isoleucine indicating isoleucyl-tRNA synthetase as the site of inhibition.
STABLLI
Sr 82 Inhibitor Concentration 5M) Inhibition Isoleucine Compound 2 24 43 0.119 24 4 1.16 Throughout the description and claims of this specification, the word "comprise" and variations of that word, such as "comprises" and "comprising", are not intended to exclude other additives or components or integers.
WO 95/09925 I'CIC CB9)-1/02088 CHEMICAL FORMULAE (IN DESCRIPTION)
OH
HO 7 C CH, -CH 0 CH C H H3C HC CNCH 4CPIC;6JHCMH ,O CM 3 C2 C 2
HO
H
H CH CCH CM H3I I I
H
3 C &C-1K CM /O Ci 3 C
CH
HO T HQN C CH 2 CH C 2 H3C 3 H NCH 2 C 02 H3', ,C 5CH CH
H
H CH CH CH, H.1
H
T H HQ ~NCH C CM Y CH CM 3
H
3 C C 2
CM
3
OH
MO A'CM CH, CH
CM
3
''C
H
3 C MHC CHCH CH O CM a I I I H CH f HC "CH C 11 0 2 2 0
(IA)
SUBSTITUTE SHEET (RULE 26)
I~
WO 95/09925I'"/19/2(H 11CIAN19-1/02088 11 CHEMI CAL FORMULAE (IN DESCRIPTION)
OH
CH CH CH, 0 CH CH 'H'C "CH; CH 2
C
3 HC H lic C "CH 2 2 OH 2 2R2 III I I I
H
3 CH iC< CH C (IB) C3
HO
-,CH "I CLH-
(IC)
~CH CH CH1CH 2 I4
(ID)
0 C H
(IC-
CH'ICE
'0 OHi SUBSTITUTE SHEET (RULE 26)

Claims (10)

1. A method of detecting compounds having activity as inhibitors of protein and/or mRNA biosynthesis which are potentially useful as herbicides, which method comprises incubating a mixture of reagents suitable for the synthesis of a functional reporter enzyme at a detectable rate in vitro, both alone as a control and in the presence of a test compound, said mixture comprising: 1) an amino acid mixture; 2) a plasmid DNA encoding the functional reporter enzyme; 3) an S30 extract from a prokaryotic organism lacking the functional reporter enzyme activity; and 4) a low molecular weight compound mix comprising the reagents required for protein synthesis in vitro and; magnesium ion; detecting the functional reporter enzyme produced in the control and test mixtures and comparing the results.
2. A method of determining the mode of action of a herbicide compound, the method comprising incubating a mixture of reagents suitable for the synthesis of a functional reporter enzyme at a detectable rate in vitro, bolh alone as a control and in the presence of a test compound, said mixture comprising: 1) an amino acid mixture; 2) a plasmid DNA encoding the functional reporter enzyme; 3) an S30 extract from a prokaryotic organism lacking the functional reporter enzyme activity; and 4) a low molecular weight compound mix comprising the reagents required for protein synthesis in vitro and; magnesium ion; detecting the functional reporter enzyme produced in the control and test mixtures and comparing the results.
3. A method according to claim 1 or 2, wherein the plasmid DNA carries the lac Z gene, 1 and the S30 extract is from an E. coli strain which lacks P-D-galactosidase. A) 13
4. A method according to claim 3, wherein the E. coli strain is the lac deleted strain MC1061. A method according to any one of the preceding claims, wherein detection of the functional reporter enzyme is by a colorimetric or light gene;e ion assay technique.
6. A colorimetric in vitro method for detecting inhibitors of transcription (RNA polymerase) and/or translation (the synthesis of a functional protein gene product), which are potentially useful as herbicides, in an E. coli extract, the method comprising supplementing the E. coli extract with tRNA and cofactors required for biosynthesis, priming the mixture with plasmid DNA carrying the lac Z gene, allowing the primed mixture to synthesize 3-D-galactosidase, quantitatively detecting S. the amount of P-D-galactosidase produced, and determining whether the presence of a potential inhibitor has reduced the p-D-galactosidase activity relative to controls. *o* A method according to any one of the preceding claims, wherein the inhibitor is an inhibitor of an aminoacyl-t-RNA synthetase.
8. A novel biologically active inhibitor of bacterial protein and/or mRNA biosynthesis (transcription and translation) which has herbicidal activity, identified using the a method of any one of the preceding clains.
9. A method as defined in claim 1 of detecting compounds having activity as inhibitors of protein and/or mRNA biosynthesis substantially as herein described with reference to any example thereof. A method as defined in claim 2 of defining the mode of action of herbicides substantially as herein described with reference to any example thereof.
11. A colorimetric in vitro method as defined in claim 6 for detecting inhibitors of transcription (RNA polymerase) and/or translation (the synthesis of a functional tt/ 14 protein gene product) in an E. coli extract substantially as herein described with reference to any example thereof.
12. A biologically active inhibitor of bacterial protein and/or mRNA biosynthesis (transcription and translation) as defined in claim 8 substantially as herein described with reference to any example thereof. DATE: 29 October 1997 ZENECA LIMITED By their Patent Attorneys PHILLIPS ORMONDE FITZPATRICK 0* 0 "1 r B' L L~ II I qb~ IN'TERNATIO(NAL SEARCH REPORTI Intiler il Ap iHeAlltco No PC1/GB 94/02088 A. CLASSIFICATION OF SUBJECT MATTER IPC 6 C12Q1/18 //C12Q1/25 According to International Patent Cassfication (IPC) or to both national classificaton and IPC B. FIELDS SEARCHED Minimum documentation searched (classification system followed by classification symbols) IPC 6 C12Q Documentation searched other than minmum documentaton to the extent that such documents arc included in the fields searched Electronic data base consulted during the mternational search (name of data base and, where practical, search terms used) C. DOCUMENTS CONSIDERED TO BE RELEVANT Category' Citation of document, with indication, where appropnate, of the relevant passages Relevant to claim No. X ANNUAL REVIEW OF GENETICS, 1-10 vol.7, 1973, PALO ALTO, CA, US pages 267 287 G. ZUBAY 'In vitro synthesis of protein in microbial systems' cited in the application see page 278, paragraph 2 A MANIATIS ET AL. 'Molecular Cloning' 1989 COLD SPRING HARBOR LABORATORY PRESS see page 18.81 page 18.84 M Further documents are listed in the continuation of box C. Patent family members are lted in annex. Special categories of cited documents 'T later document published after the intemational filing date or prionty date and not in conflict with the application but "A document defining the general state of the art which is not cited to understand the principle or theory imderlying the considered to be of particular relevance inventon crlier document but published on or after the international "X document of particular relevance; the claimed invention filing date cannot be considered novel or cannot be considered to document which may throw doubts on pronty claim(s) or involve an inventive step when the document is taken alone which is cited to establish the publication date of another document of particular relevance; the claimed invention citation or other special reason (as specified) cannot be considered to involve an inventive step when the document referring to an oral disclosure, use, exhibition or document is combined with one or more other such docu- other means ments, such combination being obvious to a person skilled document published prior to the international filing date but in the art. later than the priority date claimed document member of the same patent family Date of the actual completion of the international search Date of mailing of the international search report 27 January 1995
16.02.95 Name and mailing address of the ISA Authorized officer European Patent Office, P.B. 5818 Patentlaan 2 NL 2280 HV Rijswijk Tel. (+31-70) 340-2040, Tx. 31 651 epo ni, Molina Galan E Fax 31-70) 340-3016 Form PCT/ISA/210 (second sheet) (July 1992) page 1 of 2 INTIEMNATrIONAI, SK'ARCH I KiPOwR lri nAl AJ111ICAlion No~ PC1/GB 94/02088 C.(Contlnuatirn) DOCUMEINTS CONSID1311.1I) TO HEl RELEIVANT Catellory Ctation of document. with indication, wheze approprialt, of the relevant pa=Sans Relevant to claim No. A GENE. vol.6, 1979, AMSTERDAM NL pages 29 42 J COLLINS 'Cell-free synthesis of proteins coding for mobilisation functions of ColEl and transposition functions of Tn3' cited in the application Form PCTflSAI2IO (continuation of second sheet) (July 1992) page 2 of 2
AU77023/94A 1993-10-06 1994-09-26 In vitro assay to detect inhibitors of protein and/or MRNA biosynthesis Ceased AU686231B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GB939320562A GB9320562D0 (en) 1993-10-06 1993-10-06 Novel assay and applications
GB9320562 1993-10-06
PCT/GB1994/002088 WO1995009925A1 (en) 1993-10-06 1994-09-26 IN VITRO ASSAY TO DETECT INHIBITORS OF PROTEIN AND/OR mRNA BIOSYNTHESIS

Publications (2)

Publication Number Publication Date
AU7702394A AU7702394A (en) 1995-05-01
AU686231B2 true AU686231B2 (en) 1998-02-05

Family

ID=10743067

Family Applications (1)

Application Number Title Priority Date Filing Date
AU77023/94A Ceased AU686231B2 (en) 1993-10-06 1994-09-26 In vitro assay to detect inhibitors of protein and/or MRNA biosynthesis

Country Status (8)

Country Link
EP (1) EP0722505A1 (en)
JP (1) JPH09503131A (en)
KR (1) KR960705056A (en)
AU (1) AU686231B2 (en)
GB (1) GB9320562D0 (en)
HU (1) HUT73691A (en)
NZ (1) NZ273643A (en)
WO (1) WO1995009925A1 (en)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5747338A (en) * 1996-08-15 1998-05-05 Chiron Corporation Method and construct for screening for inhibitors of transcriptional activation
US5858367A (en) * 1997-03-27 1999-01-12 Case Western Reserve University Methods for screening for antimicrobials utilizing AarC and compositions thereof
JP2002511744A (en) * 1997-04-22 2002-04-16 スミスクライン・ビーチャム・コーポレイション Homogeneous fluorescence assays and methods for measuring gene expression activation
FR2786787B1 (en) * 1998-12-08 2002-04-19 Proteus METHOD OF IN VITRO ANALYSIS OF A KNOWN PHENOTYPE FROM A SAMPLE OF NUCLEIC ACIDS
FR2786788B1 (en) * 1998-12-08 2002-04-19 Proteus METHOD FOR SCREENING SUBSTANCES CAPABLE OF ALTERING THE ACTIVITY OF ONE OR MORE TARGET PROTEINS OR OF A TARGET SET OF PROTEINS EXPRESSED IN VITRO
DE00920677T1 (en) * 1999-04-09 2005-06-23 Gpc Biotech Ag METHOD FOR IDENTIFYING ANTIBACTERIAL COMPOUNDS
EP1043403A1 (en) * 1999-04-09 2000-10-11 GPC AG, Genome Pharmaceuticals Corporation Novel method for identifying antibacterial compounds
US6818396B1 (en) 2000-11-28 2004-11-16 Proteus S.A. Process for determination of the activity of a substance using an in vitro functional test
GB0029539D0 (en) * 2000-12-04 2001-01-17 Isis Innovation Method for identifying modulatorss of transcription

Also Published As

Publication number Publication date
JPH09503131A (en) 1997-03-31
NZ273643A (en) 1997-12-19
HU9600859D0 (en) 1996-05-28
GB9320562D0 (en) 1993-11-24
AU7702394A (en) 1995-05-01
WO1995009925A1 (en) 1995-04-13
EP0722505A1 (en) 1996-07-24
KR960705056A (en) 1996-10-09
HUT73691A (en) 1996-09-30

Similar Documents

Publication Publication Date Title
CA2204120C (en) Medium for detecting enterococci in a sample
EP0610937B1 (en) Process for detecting luciferase
EP1049798B1 (en) Antibiotic sensitivity testing
AU686231B2 (en) In vitro assay to detect inhibitors of protein and/or MRNA biosynthesis
KR960705057A (en) ASSAY PROCEDURE AND APPLICATION IN IDENTIFICATION OF HERBICIDES
CA1290665C (en) Method for the selective detection of microbial nucleotides
CA1103050A (en) Method for detecting toxic substances in liquid
Leach et al. [6] Commercially available firefly luciferase reagents
WO1999038999A1 (en) Method and compositions for detecting luciferase in biological samples
EP1177315B1 (en) Cell assay, method and reagents
US6323186B1 (en) Phosphate-bound polyazaindacene derivatives of nucleotides
ES2305912T3 (en) MEANS TO DETECT MICROBES OBJECTIVE IN A SAMPLE.
NZ268405A (en) Atp-adp chemiluminescent testing for microorganisms including a source of a magnesium ion
US20060073537A1 (en) Reagent system and process for adenosine triphosphate monitoring
CA2356122A1 (en) Detection of cells using the luciferase/luciferin reaction
ES2298457T3 (en) MEANS TO DETECT MICROBES OBJECTIVE IN A SAMPLE.
Riss et al. Homogeneous Multiwell Assays for Measuring Cell Viabiltiy, Cytotoxicity, and Apoptosis
SU1582993A3 (en) Method of determining the content of creatinine, creatine and sarcosine in biological fluid
Lapierre et al. Developing a fluorometric urease activity microplate assay suitable for automated microbioreactor experiments
US20040038419A1 (en) Assays and kits for detecting the presence of nitriles and/or cyanide
Mandal et al. A cognate tRNA specific conformational change in glutaminyl‐tRNA synthetase and its implication for specificity
CA2483570C (en) Reagent system and process for adenosine triphosphate monitoring
EP1118618A1 (en) Monitor protein for measuring phosphorylation of protein
GB2342923A (en) Production of non-viable cells using antibiotics
Hornby Downstream processing effects on microbial viability

Legal Events

Date Code Title Description
MK14 Patent ceased section 143(a) (annual fees not paid) or expired