AU3535000A - Purification of proteins - Google Patents

Description

PURIFICATION OF PROTEINS FIELD OF THE INVENTION The present invention relates to an improved process for purifying proteins.

BACKGROUND OF THE INVENTION Alpha-l-proteinase inhibitor or "alpha-l-PI" herein), also known as c-antitrypsin, is a serum glycoprotein with a molecular weight of 10 52,000. Alpha-l-PI is synthesized in the liver and is present in the serum at levels between 150 and 350 mg/dl (equivalent to 30-80 AM) when assayed with plasma standards.

Alpha-1-PI functions in the lungs to inhibit neutrophil elastase, a serine protease, which in large quantities can lead to the destruction of the 15 alveolar walls. In the normal lung, alpha-1-PI provides more than 90% of the anti-neutrophil elastase protection in the lower respiratory tract.

Alpha-l-PI deficiency is an autosomal, recessive hereditary disorder displayed by a large number of allelic variants and has been characterized into an allelic arrangement designated as the protease inhibitor (Pi) system.

These alleles have been grouped on the basis of the alpha-1-PI levels that occur in the serum of different individuals. Normal individuals have normal serum levels of alpha-l-PI (normal individuals have been designated as having a PiMM phenotype). Deficient individuals have serum alpha-l-PI levels of less than 35% of the average normal level (these individuals have been designated as having a PiZZ phenotype). Null individuals have undetectable alpha-1-PI protein in their serum (these individuals have been designated as having a Pi(null)(null) phenotype).

Alpha-l-PI deficiency is characterized by low serum (less than 35% of average normal levels) and lung levels of alpha-l-PI. These deficient individuals have a high risk of developing panacinar emphysema. This emphysema predominates in individuals who exhibit PiZZ, PiZ(null) and Pi(null)(null) phenotypes. Symptoms of the condition usually manifests in afflicted individuals in the third to fourth decades of life.

The emphysema associated with alpha-1-PI deficiency develops as a result of insufficient alpha-l-PI concentrations in the lower respiratory tract to inhibit neutrophil elastase, leading to destruction of the connective tissue framework of the lung parenchyma. Individuals with alpha-l-PI deficiency have little protection against the neutrophil elastase released by the neutrophils in their lower respiratory tract. This imbalance of protease:protease inhibitor in alpha-l-PI deficient individuals results in chronic damage to, and ultimately destruction of the lung parenchyma and alveolar walls.

Individuals with severe alpha-l-PI deficiency typically exhibit endogenous serum alpha-I-PI levels of less than 50 mg/dl, as determined by commercial standards. Individuals with these low serum alpha-l-PI levels 10 have greater than an 80% risk of developing emphysema over a lifetime. It is estimated that at least 40,000 patients in the United States, or 2% of all those with emphysema, have this disease resulting from a defect in the gene coding Sfor alpha-l-PI. A deficiency in alpha-l-PI represents one of the most common lethal hereditary disorders of Caucasians in the United States and Europe.

Therapy for patients with alpha-l-PI deficiency is directed towards replacement or augmentation of alpha-l-PI levels in the serum. If serum levels of alpha-1-PI are increased, this is expected to lead to higher concentrations in the lungs and thus correct the neutrophil elastase: alpha-l- PI imbalance in the lungs and prevent or slow destruction of lung tissue.

Studies of normal and alpha-l-PI deficient populations have suggested that the minimum protective serum alpha-l-PI levels are 80 mg/dl or 11 uM (about o 57 mg/dl; using pure standards). Consequently, most augmentation therapy in alpha-1-PI deficient patients is aimed toward providing the minimum protective serum level of alpha-l-PI, since serum alpha-1-PI is the source of alveolar alpha-l-PI.

Alpha-l-PI preparations have been available for therapeutic use since the mid 1980's. The major use has been augmentation (replacement) therapy for congenital alpha-I-PI deficiency. The half-life of human alpha-l-PI in vivo is 4.38 days with a standard deviation of 1.27 days. The currently recommended dosage of 60 mg alpha-1-PI/kg body weight weekly will restore low serum levels of alpha-1-PI to levels above the protective threshold level of 11 pM or 80 mg/dl.

Previously alpha-l-PI has been purified by various techniques. One such process combined chromatography on an anion-exchange chromatography medium followed by PEG precipitation. Other purification procedures have used PEG precipitation followed by anion-exchange chromatography, or multiple PEG precipitation steps followed by anionexchange chromatography. Others have used combinations of PEG precipitation, one or more anion-exchange chromotography steps and metal chelate chromotography steps. Still other methods have used phase separation techniques to purify alpha-l-Pl. Specific activities of 1.26 units/mg have been reported for purified alpha-l-PI.

SUMMARY OF THE INVENTION In a first aspect, the present invention provides a process for increasing 10 a yield in units of alpha-1-PI in a solution containing alpha-1-PI which is subjected to viral inactivation by solvent-detergent treatment comprising adding to the alpha-1-PI solution prior to the solvent-detergent treatment a sugar in an amount sufficient to increase the yield of alpha-1-PI following said solvent-detergent treatments.

15 Preferably, the sugar is added to the protein solution in an amount from 10% to 20% wt/wt.

In a preferred embodiment of the first aspect, the sugar is sucrose.

In a second aspect, the present invention provides a process for removing apolipoprotein A and apolipoprotein B from a protein solution containing apolipoprotein A and apolipoprotein B, the process comprising the steps of: e adding bentonite to the protein solution; contacting the bentonite with the protein solution for a time sufficient for the bentonite to absorb apolipoprotein A and apolipoprotein B; and removing the bentonite from the protein solution.

Preferably, the bentonite contacts the protein solution for at least one hour.

It is further preferred that the amount of bentonite added to the protein solution is from 0.1 to 1% wt/wt. Preferably, the amount of each of apolipoprotein A and apolipoprotein B remaining in the protein solution after removal of the bentonite is less than about 0.01 mg/ml.

Throughout this specification the word "comprise", or variations such as "comprises" or "comprising", will be understood to imply the inclusion of a stated element, integer or step, or group of elements, integers or steps, but not the exclusion of any other element, integer or step, or group of elements, integers or steps.

DETAILED DESCRIPTION The process comprises a unique combination of purification steps to produce a high yield, high specific activity alpha-l-PI preparation.

Alpha-l-PI is purified from an impure protein fraction. The impure protein fraction may be plasma, alpha-l-PI produced by recombinant methods or any other source comprising alpha-l-PI protein. In a preferred embodiment, the impure protein fraction is Cohn Fraction IV 1

+IV

4 paste the preparation of which is well known in the art.

Initial Treatment of Fraction IV, IV 4 Paste The Fraction IV 1

IV

4 paste (or other impure protein fraction) is suspended in 5 2 parts water or saline solution, from about 0.05 to about 0.15 M NaCl per part of Fraction IV, IV 4 paste at less than about 15 and at a pH of about 6.0 0.2 for at least about one hour. Soluble proteins, including albumin, alpha-2-globulin and beta-globulin, are then separated from the insoluble proteins, including alpha-1-proteinase inhibitor by filter -"press, centrifugation or the like. The residue is washed, at less than with about 5 original paste volumes of water or saline solution at pH 6 0.2 to remove additional soluble protein physically trapped in the insoluble paste.

paste.

A

It has been found that in suspending the Fraction IV 1

IV

4 paste in water or saline solution at pH 6.0 0.2, and subsequent washes removes almost all of the albumin and most of the alpha-2- and beta proteins in the Fraction IV V 4 precipitate.

PEG Precipitation The insoluble protein residue is resuspended in about 5 2 volumes of water at pH of 0.5 per volume of residue at a temperature of about 15 °C 5 °C for preferably about 6 hours, although shorter or longer times may be used. Shorter times are not preferred as the yield improves as the period is increased. Six hours is presently preferred as the optimalcombination of process time and yield. Solid Tris is then added to a final concentration of 10 5 mM and solid NaCI is added to a final concentration of 150 20 mM and the pH is adjusted to Polyethylene glycol 3350 (PEG) is then added to a final concentration of 15 5% wt/wt and is mixed at about 15 5°C for about one hour. PEG is added to precipitate alpha-2-globulin.

15 The PEG precipitate which forms is removed by a filter press. The filter press is washed before and after filtering with a solution containing 150 25 mM NaCI and 15 5% wt/wt PEG at a pH 8.0 0.5. Alternatively, the precipitate may be removed by centrifugation.

ZnCI 2 Precipitation ZnC1 2 (100 10 mM) is added to the PEG supernatant to a final concentration of6 20 mM and the solution is adjusted to pH 7.5 0.5. The solution is cooled to about 5 5°C and mixed for at least about one hour. The ZnC12 precipitates crude alpha-1-PI. The crude alpha-1- PI is concentrated by filtration, preferably by ProstakT M filtration, for example as described in "Prostak Open-Channel Modules" by Millipore Corporation, which is incorporated herein by reference, or by centrifugation and the filtrate is removed. The concentrated suspension or precipitate may be frozen for future processing.

Viral Inactivation by Solvent-Deferred Treatment The crude alpha-1-PI is re-solubilized in about 50 mM NaEDTA through Prostak by recirculating. A sugar, preferably sucrose, in an amount of about 15 5% wt/wt (or about 0.25 0.05 M Na 3 citrate) is added as a stabilizer during viral inactivation. The solution is mixed at 15 5* C until the sucrose is dissolved.

The alpha-l-PI-containing solution is virus inactivated by solvent-detergent treatment.

A solution of 10 1% wt/v polysorbital 80 and 3 0.3% wt/wt tri-n-butyl phosphate is added to the alpha-1-PI solution to a final concentration of 1.0 0.5% wt/v polysorbate-80 and 0.3 0.15% wt/wt tri-n-butyl phosphate. The solution is then incubated at 27" 3 C, pH 8 0.5 for not less than 6 hours to inactivate any viruses which may be present in the alpha-1-PI.

It has been found that the presence of sugar, sucrose, as a stabilizer during viral inactivation by solvent-detergent treatment increases the yield of alpha-1-PI in units as compared to a control, alpha-l-PI solution viral inactivated by solvent detergent without sugar as a stabilizer. The increase in yield is preferably at least 10%, more preferably at least 20% and even more preferably at least After the incubation, the treated alpha-1-PI solution is cooled to 0 0 -10°C and the pH is adjusted to 8.0 0.1.

Anion-Exchange Chromatoraphy The SD treated solution is then diluted with about 1 volume of water per volume of SD treated solution. The diluted solution is then applied to a preequilibrated QAE chromatography medium or other similar anion-exchange medium which binds alpha-1-PI, allowing other proteins to be separated from the alpha-l-PI. Either batch or column chromatography may be used. After alpha-1-PI has been absorbed onto the medium, it is washed with a buffer containing 20 10 mM NaCl and 20 10 mM sodium phosphate (NaH 2

PO

4 at a pH of 8 1 to remove unbound material, including beta-proteins. Alpha-l-PI is then eluted from the 15 anion-exchange chromatography medium with an elution wash containing 100 50 mM NaCl and 20 10 mM sodium phosphate, at a pH of 8 1. The eluate which includes alpha-I-PI is collected for further processing.

After the removal of alpha-1-PI, the anion-exchange medium is cleaned by washing with, in sequence: an aqueous solution containing 2 0.2 M NaC1, 20 10 mM sodium phosphate, 20 pH 8 1; then water for injection (WFI); then an aqueous solution containing 500 mM NaOH; and finally WFI. The chromatography medium is then stored in 2 0.2 M NaC1, 20 10 mM sodium phosphate, pH 8 1.

Treatment of Alpha-1-PI-Containing Eluate The eluate-containing alpha-i-PI is combined and treated with 0.1 to 1.0% (wt/wt) bentonite for about an hour or more to reduce the amount of apolipo protein preferably to less than about 0.01 mg/ml apolipo protein A and less than about 0.01 mg/ml apolipo protein B. The bentonite is removed by filtration, preferably by Cuno® filtration, for example, as described in "Zeta Plus® C Series Filter Medium" by Cuno Inc. which is incorporated herein by reference.

The resulting solution is concentrated by ultrafiltration membrane until the alpha-I-PI activity is at least 10 units/ml. The concentrated product is then filtered through a 0.45 micron filter to remove any particulate matter. The alpha-l-PI is then Planova filtered to remove virus, sterile filtered through a 0.22 micron filter to be dispensed into vials and lyophilized for storage.

Alpha-l-PI is stored at 2-8 C.

The lyophilized alpha-1-PI may be redissolved in sterile water for administration to patients.

Alpha-l-PI Activity Assays A chromogenic assay may be used to detect alpha-i-PI activity of the reconstituted alpha- 1-PI. The assay utilizes a trypsin sensitive chromogenic substrate which releases p-nitroaniline in the presence of trypsin (supplied by Sigma Chemical Co. of St Louis, Missouri). The p-nitroaniline released is detected at 405 nm. alpha-l-PI inhibits the release of p-nitroaniline from the substrate. The activity of alpha-1-PI in the product is determined by reference to a standard alpha-1-PI activity curve. Chromogenic assay of reconstituted lyophilized alpha-1-PI prepared according to the above process shows a specific activity of at least about unit/OD 280 Administration Alpha-1-PI may be infused into a patient at a rate of about 0.08 ml/kg body weight per minute for the first 10 minutes. If the patient does not experience any discomfort, the rate may be increased as tolerated. If tolerated, subsequent infusions to the same patient may be at the higher rate. If adverse events occur, the rate should be reduced or the infusion interrupted until the symptoms subside. The infusion may then be resumed at a rate which is tolerated by the 15 patient.

If large doses are to be administered, several reconstituted vials of alpha-i-PI may be pooled in an empty, sterile I.V. infusion container using aseptic technique.

Example 1 20 Fr. IV 1

IV

4 paste (600 g) from Cohn fractionation scheme was suspended in 1800 mL water at 5 °C at pH of 6.0 without any titration for one hour. Upon completion of suspension, the suspension was filtered through 10 CP filter (Cuno) by filter press. The filtrate was collected, assayed, and alpha-1-PI (A1PI) specific activity and optical density at 280 nm (OD 2 8 0 nm) were measured. The paste in the filter press was washed with 600 mL of water at 5 0 C and filtrate was collected. This procedure was repeated four more times and all filtrates were collected, assayed, and A1PI specific activity and OD 2 80 nm were measured. The 350 g of resulting paste was obtained. The A1PI activity and OD 28 0 nm of all the process samples is described in the following Table 1.

Table 1: A1PI activity and O.D. 280 nm of water washed fractions.

Sample Volume(mL) AIPI(u/mL) Total AlPI(u) O.D. 280nm S.A.(u/OD) wash 0 1450 0.06 87 22.2 0.003 wash 1 600 0.1 60 29.9 0.003 wash 2 600 0.08 48 25.5 0.003 wash 3 600 0.04 24 13.0 0.003 wash 4 600 0 0 4.8 0 wash 5 600 0 0 3.0 0 Example 2 The resulting 350 g of paste from example 1 was resuspended in 1050 mL of water at pH of at a temperature of 18 0 C for 6 hours. Solid Tris was added to a final concentration of 10 mM and solid NaCI was added to a final concentration of 150 mM and pH is adjusted to Polyethylene glycol (PEG 3350) was added to a final concentration of 15% (wt/wt) and was mixed at 18 C for one hour. The resulting precipitate was removed by filter press with 10 CP filter to recover the supematant. The paste in the filter press was postwashed with the solution containing 15% wt/wt PEG-3350, 10 mM Tris, and 150 mM NaCI. The filtrate And postwash filtrate were combined. The result is summarized in the following Table 2.

Table 2: PEG-3350 Precipitation S: S"aple Volume(mL) AlPI(u/mL) Total AIPI(u) O.D. 280 nm S.A.(u/OD) 15 recon. 1400 1.063 1488 13.32 0.0798 PEG 2465 0.513 1265 2.16 0.2375 filtrate Example 3 *20 To the recovered PEG-3350 filtrate from example 2, ZnCl 2 was added to a final concentration of 2 mM, the pH was adjusted to 7.5, and the temperature was cooled to 5 C to precipitate crude A1PI. After one hour's mixing, the crude AIPI was filtered through Prostak filtration for concentration and the resulting suspension was resolubilized with NaEDTA solution. The result is summarized in the following Table 3.

Table 3: ZnC12 precipitation Samle Volume (mLU AlPI(u/mLU Total A1PI(u) O.D. 280 nm S.A.(u/OD) Prostak filtrate 2200 0.0159 35 0.15 0.106 NaEDTA recon. 264 4.305 1065 13.72 0.3138 Example 4 Sucrose in an amount of 16.7% (wt/wt) was added to the NaEDTA resolubilized solution in example 3 and mixed at 18C until sucrose was completely dissolved. To this solution, in a final concentration of 1.0% and tri-n-butyl phosphate in a final concentration of 0.3% were added. This solution was incubated at 27.5 C for not less than 6 hours to inactivate any possible contaminating lipid-enveloped viruses. After incubation, the solution was cooled to 5 0 C and the pH is adjusted to 8.0. As a control, the above procedure was repeated except that no sucrose was added. The stability of A1PI during solvent detergent (SD) treatment in the presence of 16.7% sucrose (SD AIPI) and without sucrose (control) is presented in the following Table 4.

Table 4: Stability of A1PI during SD Treatment in the Presence of Sucrose Sample Volume(mL) AIPI(u/mL Total A1PI(u) %AIPI fronr NaEDTA SD A1PI 311 3.35 1042 97.8 Control 293 2.13 624 58.6 Example S. 15 To the resulting SD AIPI solution of example 4, 311 g of distilled water was added to lower ionic strength before loading onto a QAE column. This solution was loaded onto 300 mL of preequilibrated QAE ion exchange column with flowrate of 12 mL/minute. The column was washed with 6 L of saline phosphate buffer (20 mM NaCI, 20 mM NaH 2

PO

4 pH The A1PI was eluted with 1.8 L of saline phosphate buffer (100 mM NaC1, 20 mM NaH 2

PO

4 pH 20 The ion exchange medium was cleaned by washing with in sequence: 2M NaC1. 20 mM NaH 2

PO

4 pH 8.0, 500 mM NaOH, and Distilled water. The chromatography medium was :i stored in 2 M NaC1, 20 mM NaH 2

PO

4 pH 8.0. The pooled fractions containing AIPI was assayed and the result is presented in the following Table Table 5: QAE Ion Chromatography Sample Volume(mL) A1PI(umL) Total AIPI(ul O.D. 280nm S.A.(u/OD) Eluate 1500 0.62 930 0.58 1.058 Example 6 To the pooled eluate resulting from example 5, 3.0 g of depyrogenated bentonite was added and mixed at 20°C for one hour. The bentonite was removed by Cuno filtration. The filtrate was concentrated by ultrafiltration. The concentrate was Planova filtered and sterile filtered in series.

The filtrate was dispensed into vials and lyophilized for storage. All the process samples were assayed and the result is presented in the following Table 6.

Sample Cuno filt.

concentrate final bulk Volume(mL) 1710 75 92 AlPI(u/mL) 0.52 11.6 9.4 Total AlPI(u) 885 870 865 O.D. 280 nm 0.385 8.092 6.225 S.A.(u/OD) 1.351 1.434 1.510 .r

C.

C

C.

S

The present invention is not limited to the specific embodiments given. It will be obvious to one skilled in the art that variations in the materials, steps, and process parameters from those 10 described in the preferred embodiments herein may be used without departing fron the practice of the invention. Accordingly, the present invention is not intended to be limited to the working embodiments described above. Rather, the scope of the invention is defined in the following claims.

C..

C

Claims (7)

1. A process for increasing a yield in units of alpha-1-PI in a solution containing alpha-1-PI which is subjected to viral inactivation by solvent- detergent treatment comprising adding to the alpha-1-PI solution prior to the solvent-detergent treatment a sugar in an amount sufficient to increase the yield of alpha-1-PI following said solvent-detergent treatment.

2. A process as claimed in claim 1 wherein the sugar is added to the protein solution in an amount from 10% to 20% wt/wt.

3. A process as claimed in claim 1 or claim 2 wherein the sugar is sucrose. 15

4. A process for removing apolipoprotein A and apolipoprotein B from a protein solution containing apolipoprotein A and apolipoprotein B, the process comprising the steps of: adding bentonite to the protein solution; ~contacting the bentonite with the protein solution for a time sufficient for the bentonite to adsorb apolipoprotein A and apolipoprotein B; and removing the bentonite from the protein solution.

A process as claimed in claim 4 wherein the bentonite contacts the protein solution for at least one hour.

6. A process as claimed in claim 4 or claim 5 wherein the amount of bentonite added to the protein solution is from 0.1 to 1.0% wt/wt.

7. A process according to any one of claims 4 to 6 wherein the amount of each of apolipoprotein A and apolipoprotein B remaining in the protein solution after removal of the bentonite is less than about 0.01 mg/ml. Dated this sixteenth day of May 2000. ALPHA THERAPEUTIC CORPORATION Patent Attorneys for the Applicant: F B RICE CO 4 C **e