AU3016900A - A novel haemopoietin receptor and genetic sequences encoding same - Google Patents

A novel haemopoietin receptor and genetic sequences encoding same Download PDF

Info

Publication number
AU3016900A
AU3016900A AU30169/00A AU3016900A AU3016900A AU 3016900 A AU3016900 A AU 3016900A AU 30169/00 A AU30169/00 A AU 30169/00A AU 3016900 A AU3016900 A AU 3016900A AU 3016900 A AU3016900 A AU 3016900A
Authority
AU
Australia
Prior art keywords
seq
receptor
nucleic acid
ser
leu
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
AU30169/00A
Other versions
AU767972B2 (en
Inventor
Warren S. Alexander
Timothy Gainsford
Douglas James Hilton
Donald Metcalf
Nicos A Nicola
Tracy Willson
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
CSL IP Investments Pty Ltd
Original Assignee
Amrad Operations Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from AU69805/96A external-priority patent/AU6980596A/en
Application filed by Amrad Operations Pty Ltd filed Critical Amrad Operations Pty Ltd
Priority to AU30169/00A priority Critical patent/AU767972B2/en
Publication of AU3016900A publication Critical patent/AU3016900A/en
Application granted granted Critical
Publication of AU767972B2 publication Critical patent/AU767972B2/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Landscapes

  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Peptides Or Proteins (AREA)

Description

AUSTRALIA
PATENTS ACT 1990 DIVISIONAL APPLICATION NAME OF APPLICANT: AMRAD Operations Pty. Ltd.
ADDRESS FOR SERVICE: DAVIES COLLISON CAVE Patent Attorneys Level 3 303 Coronation Drive Milton, QLD, 4064 INVENTION TITLE: A novel haemopoeitin receptor and genetic sequences encoding same The following statement is a full description of this invention, including the best method of performing it known to us: Q:\OPER\EJH\2269364C. 118 27/4/2000 WO 97/12037 PCT/AU96/00 6 0 7 -1- A NOVEL HAEMOPOIETIN RECEPTOR
AND
GENETIC SEQUENCES ENCODING
SAME
The present invention is directed to a novel haemopoietin receptor or a derivative thereof and to genetic sequences encoding same. The receptor molecule and its derivatives and the genetic sequences encoding same of the present invention are useful in the development of a wide range of agonists, antagonists, therapeutics and diagnostic reagents based on ligand interaction with its receptor. The present invention particularly relates to a receptor for leptin.
Bibliographic details of the publications numerically referred to in this specification are collected at the end of the description. Sequence Identity Numbers (SEQ ID NOs.) for the S. nucleotide and amino acid sequences referred to in the specification are defined following the bibliography.
1 Throughout this specification and the claims which follow, unless the context requires otherwise, the word "comprise", or variations such as "comprises" or "comprising", will be .understood to imply the inclusion of a stated integer or group of integers but not the exclusion of any other integer or group of integers.
The preferred haemopoietin receptor of the present invention is referred to herein as "NR2".
The NR2 receptor interacts with leptin and is referred to as a "leptin receptor". The terms "haemopoietin receptor", "NR2" and "leptin receptor" are used interchangeably throughout the subject specification. The species from which a particular NR2is desired is given in single letter abbreviation in lower case before NR2. For example, muine NR2 is "mNR2" and human NR2 is "hNR2". A recombinant form may have the prefix The rapidly increasing sophistication of recombinant DNA techniques is greatly facilitating research into the medical and allied health fields. Cytokine research is of particular importance especially as these molecules regulate the proliferation, differentiation and function of a wide WO 97/12037 PCT/AU96/00607 -2variety of cells. Administration of recombinant cytokines or regulating cytokine function and/or synthesis is becoming increasingly the focus of medical research into the treatment of a range of disease conditions.
Despite the discovery of a range of cytokines and other secreted regulators of cell function, comparatively few cytokines are directly used or targeted in therapeutic regimums. One reason for this' is the pleiotropic nature of many cytokines. For: example, interleukin '(IL)-11 is a functionally pleiotropic molecule initially characterized by its ability to' stimulate proliferation of the IL-6-dependent plasmacytoma cell line, T11 65 Other biological actions of IL-11 include induction of mutltipotential haemopoietin progenitor cell proliferation enhancement of megakaryocyte and platelet formation stimulation of acute phase protein synthesis (11) and inhibition of adipocyte lipoprotein lipase activity (12, 13). The diverse and pleiotropic function'of IL-11 and other haemopoietin cytokines makes these molecules an important group to study, especially at the level of interaction of the cytokines with their receptors. Manipulation and control of cytokine receptors and of cytokine-receptor interaction is potentially very important in many therapeutic situations, especially where the target cytokine is functionally pleiotropic and it is desired to block certain functions of a target cytokine but not all functions.
Another important aspect of cytokine receptors is in the search for new cytokines. In this regard, the inventors have used a procedure for cloning haemopoietin receptors without prior knowledge of their ligands. Identification of receptors then provides a screening procedure for potentially new cytokines and for previously characterised cytokines. In addition, identification of new haemopoietin receptors allows for selective blocking of pleiotropic cytokine function.
In accordance with the present invention, the inventors identified a novel haempoietin receptor which interacts with leptin, a hormone which regulates adipose tissue mass.
Accordingly, one aspect of the present invention is directed to an isolated nucleic acid molecule comprising a sequence of nucleotides encoding or complementary to a sequence encoding a WO 97/12037 PCT/AU96/00607 -3haemopoietin receptor or a derivative thereof wherein said sequence of nucleotides or a complementary form thereof is capable of hybridising under medium stringent conditions to the oligonucleotide: '-(A!G)CTCCA(AIG)TC(AIG)CTCCA-3' [SEQ ID NO:1I].
In a preferred embodiment, the nucleic acid molecule comprises a nucleotide sequence or a complementary form thereof which hybridises under medium stringent conditions to the oligonucleotides: 5'-(AIG)CTCCA(AIG)TC(AIG)CTCCA-3' [SEQ ID NO: I] 5'-ACTAGCAGGGATGTAGCTGAG-3' [SEQ DD NO:4) 5'-C.TGCTCCTATGATACCT-3' [SEQ ID NO:6] 5'-CCTCTTCCATCTTATTGCTTGG-3' [SEQ ID NO:7] 5'-ATCGGTCGTGACATACAAGG-3' [SEQ ID NO:8].
In an even more preferred embodiment, the nucleic acid molecule comprises a nucleotide sequence or a complementary form thereof which hybridises under medium stringent conditions to one or more of the following oligonucleotides: 5'-(A/G)CTCCA(A/G)TC(A!G)CTCCA-3' SEQ ED NO:1)I I 5'-ACTAGCAGQGATGTAGCTGAG-3' [SEQ ID NO:4].
5'-CTCAGCTACATCCCTGCTAGT-3' [SEQ ID 5'-CTGCTCCTATGATACCT-3' [SEQ ID NO:6] 5'-CCTCTTCCATCTTATTGCTTGG-3' [SEQ ID NO:7] 5'-ATCGGTCGTGACATACAAGG-3' [SEQ ID NO: 8] 5'-AGCTAAGCTTTCTAGATATCCAATTACTCCTTGGAGA-3' [SEQ ID NO:9] 5'-AGCTTCTAGATCAATCACTCTGGTGTTTTTCAAT-3' [SEQ ID NO: 5'-AGCTTCTAGATCAAACTTTTATATCCATGACAAC-3' [SEQ ID NO:1 1].
In a still more preferred embodiment, the nucleic acid molecule comprises a nucleotide sequence or complementary form thereof which is capable of hybridising separately under medium stringent conditions to each of oligonucleotide SEQ ID NO: I and SEQ ID NO:4 to WO 97/12037 PCT/AU96/00607 -4- SEQ ID NO: 1.
In a most preferred embodiment, the present invention provides a nucleic acid molecule comprising a sequence of nucleotides or a complementary form thereof substantially as set forth in Figure 2 [SEQ ID NO: 12] or a sequence of nucleotides capable of hybridising to all or part thereof under medium stringent conditions.
Accordingly, a preferred embodiment of the present invention is also directed to a nucleic acid molecule encoding a haemopoietin receptor or a derivative thereof and comprising a nucleotide sequence as set forth in SEQ ID NO: 12 or is capable of hybridising to all or part thereof under medium stringent conditions.
The haemopoietin receptor of the present invention is referred to herein as "NR2". In accordance with the present invention, NR2 is capable of interacting with leptin and, hence, is 15 also referred to as a "leptin receptor".
The term "derivative" includes any or all parts, fragments, portions, homologues or analogues to the nucleotide sequence set forth in SEQ ID NO: 12 as well as hybrid molecules between the NR2 receptor and other receptors or other molecules. Derivatives include single or multiple nucleotide substitutions, deletions and/or additions to the nucleotide sequence set forth in SEQ ID NO: 12.
.Another aspect of the present invention contemplates a recombinant haemopoietin receptor encoded by the nucleic acid molecules as hereinbefore described.
According to one aspect of this embodiment, there is provided recombinant haemopoietin receptor encoded by a nucleic acid molecule which comprises a nucleotide sequence or a complementary form thereof which is capable of hybridising to SEQ ID NO: 1 under medium stringent conditions.
WO 97/12037 PCT/AU96/00607 In a preferred embodiment, the recombinant haemopoietin receptor is encoded by a nucleic acid molecule which comprises a nucleotide sequence or a complementary form thereof which is capable of hybridising to SEQ ID NO: 1, SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:7 and SEQ ID NO:8 under medium stringent conditions.
In an even more preferred embodiment, the recombinant haemopoietin receptor is encoded by a nucleic acid molecule which comprises a nucleotide sequence or complementary form thereof which hybridises under medium stringency conditions to one or more of SEQ ID NO:1 and SEQ ID NO:4 to SEQ ID NO:11.
In still an even more preferred embodiment, the recombinant haemopoietin receptor is encoded by a nucleic acid molecule which comprises a nucleotide sequence or a complementary form thereof which hybridises under medium stringent conditions to each of oligonucleotides SEQ ID NO:1 and SEQ ID NO:4 to SEQ ID NO:11.
e In a most preferred embodiment, the present invention is directed to a recombinant NR2 encoded by a nucleic acid molecule comprising a nucleotide sequence or complementary form thereof substantially as set forth in SEQ ID NO: 12 or a sequence capable of hybridising to all or part thereof under medium stringent conditions.
According to this latter aspect of the present invention, there is provided a recombinant NR2 having an amino acid sequence substantially as set forth in Figure 2 [SEQ ID NO: 13] or having at least about 60% similarity to all or part thereof, more preferably at least about 70%, still more preferably at least about 80% and still more preferably at least about 90-95% or above 96%, 97%, 98% or greater than or equal to 99%) similarly to all or part of the amino acid sequence set forth in SEQ ID NO: 13.
The recombinant NR2 or a genetic sequence encoding same is preferably in isolated form meaning that a composition of matter comprises at least about 10%, more preferably at least about 20%, still more preferably at least about 30-40%, even more preferably at least about WO 97/12037 PCT/AU96/00607 -6still even more preferably at least about 70-80% or greater 85%, 90% or 95%) of the recombinant receptor or genetic sequence encoding same relative to other components in the composition as determined by, for example, molecular weight, activity, nucleic acid content or composition or other convenient means.
Reference herein to "recombinant haemopoietin receptor", "NR2" or "leptin receptor" includes reference to derivatives thereof such as parts, fragments, portions, homologues, hybrids or analogues thereof. The derivatives may be functional or not or may be non-functional but immunologically interactive with antibodies to all or part of the receptor. Derivatives of the receptor also cover agonists or antagonists of receptor-ligand interaction. Function is conveniently defined by an ability of NR2 to interact with leptin or for soluble NR2 to compete with leptin-induced activities of certain cells.
For the purposes of defining the level of stringency, reference can conveniently be made to 15 Sambrook et al (14) which is herein incorporated by reference where the washing steps disclosed at pages 952-957 are considered high stringency. A low stringency is defined herein as being in 4-6X SSC/0.1-0.5% w/v SDS at 37-45"C for 2-3 hours. Depending on the source and concentration of nucleic acid involved in the hybridisation, alternative conditions of stringency may be employed such as medium stringent conditions which are considered herein to be 1-4X SSC/0.25-0.5% w/v SDS at 45"C for 2-3 hours or high stringent conditions considered herein to be 0.1-1X SSC/O.1% w/v SDS at >60"C for 1-3 hours.
S. The nucleic acid molecule is preferably derivable from the human genome but genomes and nucleotide sequences from non-human animals are also encompassed by the present invention.
Non-human animals contemplated by the present invention include livestock animals (e.g.
sheep, cows, pigs, goats, horses, donkeys), laboratory test animals mice, rats, guinea pigs, hamsters, rabbits), domestic companion animals dogs, cats), birds chickens, geese, ducks and other poultry birds, game birds, emus, ostriches) and captive wild or tamed animals foxes, kangaroos, dingoes).
WO 97/12037 PCT/AU96/00607 -7- Preferred human genetic sequences encoding NR2 include sequences from cells of bone marrow, brain, liver, kidney, heart, testis, stomach, lymph nodes, colon, spleen and ovary, neonatal tissue, embryonic tissue, cancer or tumour-derived tissues.
The nucleic acid molecule of the present invention may be single or double stranded, linear or closed circle DNA genomic DNA), cDNA or mRNA or combinations thereof such as in the form of DNA:RNA hybrids. The nucleic acid molecule may also include a vector such as an expression vector component to facilitate expression of the haemopoietin receptor or its components or parts.
As stated above, the present invention further contemplates a range of derivatives of NR2.
Derivatives include fragments, parts, portions, mutants, homologues and analogues of the NR2 polypeptide and corresponding genetic sequence. Derivatives also include single or multiple amino acid substitutions, deletions and/or additions to NR2 or single or multiple nucleotide S 15 substitutions, deletions and/or additions to the genetic sequence encoding NR2. "Additions" to amino acid sequences or nucleotide sequences include fusions with other peptides, polypeptides or proteins or fusions to nucleotide sequences. Reference herein to "NR2" includes reference to all derivatives thereof including functional derivatives or "NR2" immunologically interactive derivatives.
Analogues of NR2 contemplated herein include, but are not limited to, modification to side chains, incorporating of unnatural amino acids and/or their derivatives during peptide, polypeptide or protein synthesis and the use of crosslinkers and other methods which impose o* conformational constraints on the rroteinaceous molecule or their analogues.
Examples of side chain modifi:::tions contemplated by the present invention include modifications of amino groups such as by reductive alkylation by reaction with an aldehyde followed by reduction with NaBH 4 amidination with methylacetimidate; acylation with acetic anhydride; carbamoylation of amin groups with cyanate; trinitrobenzylation of amino groups with 2, 4, 6-trinitrobenzene sulphbnic acid (TNBS); acylation of amino groups with succinic WO 97/12037 PCT/AU96/00607 -8anhydride and tetrahydrophthalic anhydride; and pyridoxylation of lysine with phosphate followed by reduction with NaBH4.
The guanidine group of arginine residues may be modified by the formation of heterocyclic condensation products with reagents such as 2,3-butanedione, phenylglyoxal and glyoxal.
The carboxyl group may be modified by carbodiimide activation via O-acylisourea formation followed by subsequent derivitisation, for example, to a corresponding amide.
Sulphydryl groups may be modified by methods such as carboxymethylation with iodoacetic acid or iodoacetamide; performic acid oxidation to cysteic acid; formation of a mixed disulphides with other thiol compounds; reaction with maleimide, maleic anhydride or other substituted maleimide; formation of mercurial derivatives using 4-chloromercuribenzoate, 4chloromercuriphenylsulphonic acid, phenylmercury chloride, 2-chloromercuri-4-nitrophenol 15 and other mercurials; carbamoylation with cyanate at alkaline pH.
Tryptophan residues may be modified by, for example, oxidation with N-bromosuccinimide or alkylation of the indole ring with 2-hydroxy-5-nitrobenzyl bromide or sulphenyl halides.
Tyrosine residues on the other hand, may be altered by nitration with tetranitromethane to form a 3-nitrotyrosine derivative.
Modification of the imidazole ring of a histidine residue may be accomplished by alkylation with iodoacetic acid derivatives or N-carbethoxylation with diethylpyrocarbonate.
Examples of incorporating unnatural amino acids and derivatives during peptide synthesis include, but are not limited to, use of norleucine, 4-amino butyric acid, 4-amino-3-hydroxy-5phenylpentanoic acid, 6-aminohexanoic acid, t-butylglycine, norvaline, phenylglycine, omithine, sarcosine, 4 -amino- 3 -hydroxy-6-methylheptanoic acid, 2-thienyl alanine and/or Disomers of amino acids. A list of unnatural amino acid, contemplated herein is shown in Table 1.
WO 97/12037 PCT/AU96/00607 -9- Crosslinkers can be used, for example, to stabilise 3D conformations, using homo-bifunctional crosslinkers such as the bifunctional imido esters having (CH2)n spacer groups with n=l to n=6, glutaraldehyde, N-hydroxysuccinimide esters and hetero-bifunctional reagents which usually contain an amino-reactive moiety such as N-hydroxysuccinimide and another group specific-reactive moiety such as maleimido or dithio moiety (SH) or carbodiimide (COOH).
In addition, peptides can be conformationally constrained by, for example, incorporation of C.
and N,-methylamino acids, introduction of double bonds between C, and CA atoms of amino acids and the formation of cyclic peptides or analogues by introducing covalent bonds such as forming an amide bond between the N and C termini, between two side chains or between a side chain and the N or C terminus.
These types of modifications may be important to stabilise NR2 if administered to an individual or for use as a diagnostic reagent.
15 The present invention further contemplates chemical analogues of NR2 capable of acting as antagonists or agonists of NR2 or which can act as functional analogues of NR2. Chemical analogues may not necessarily be derived from NR2 but may share certain conformational similarities. Alternatively, chemical analogues may be specifically designed to mimic certain physiochemical properties of NR2. Chemical analogues may be chemically synthesised or may be detected following, for example, natural product screening.
The identification of NR2 permits the generation of a range of therapeutic molecules capable of modulating expression of NR2 or modulating the activity of NR2. Modulators contemplated by the present invention includes agonists and antagonists of NR2 expression. Antagonists of NR2 expression include antisense molecules, ribozymes and co-suppression molecules.
Agonists include molecules which increase promoter ability or interfere with negative regulatory mechanisms. Agonists of NR2 include molecules which overcome any negative regulatory mechanism. Antagonists of NR2 include antibodies and inhibitor peptide fragments.
WO 97/12037 WO 9712037PCT/AU96/00607 TABLE 1 Non-conventional amino acid Code Non-conventional amino acid Code 6b** t a-aminobutyric acid a-amino-a-methylbutyrate anunocyclopropanecarboxylate ammioisobutyric acid anmonorbornylcarboxylate cyclohexylalanine cyclopentylalanine 15 D-alanine D-arginine D-aspartic acid D-cysteine D-glutamine D-glutamnic acid D-bistidine D-isoleucine D-leucine D-lysine D-methionine D-ornithine D-phenylalanine D-proline D-serine D-threonine Abu Mgabu Cpro Aib Norb Cpen Dal Darg Dasp Dcys Dgln Dglu Dhis Dule bleu Dlys Dmet Dom Dphe Dpro Dser Dthr L-N-methylalanine L-N-methylarginine L-N-methylasparagine L-N-inethylaspartic aci L-N-methylcysteine L-N-methylglutamine L-N-methylglutami c ac Chexa L-N-methylhisti L-N-methylisolleuci tie L-N-methylleucine L-N-niethyllysine L-N-methylinethioznj nie L-N-methy~norleuci: ne L-N-methylnorvalin e.
L-N-methylornithinF- L-N-methylphenylaiani L-N-methylproline L-N-niethylserine L-N-nethylthreonii~e L-N-methyltryptop:. an L-N-methyltyrosinc, L-N-methylvaline L-N-methylethylglycinc L-N-methyl-t-buty1l ,yc L-norleucine Nmala Nmarg Nmasn d Nmasp Nmcys Nmgln id Nmglu dine Ninhis Nmile Nmnleu Nmnlys Nmnmet Nmnle Nmnva Nmorn ne Nmphe Nmnpro Nmser Nmnthr Nmtrp Nmtyr Nmval Nmetg ine Nmtbug NMe WO 97/12037 WO 9712037PCT/AU96/00607 -1I1I- *fl.
4 0e
S
D-tryptophan D-tyrosine D-valine D-a-methylalanine D-a-methylarginine D-a-methylasparagine D-a-methylaspartate D-a-methylcysteine D-ez-methylglutamine D-a-methylhistidine D-a-methylisoleucine D-c-methylieucine D-a-methyllysine D-a-methylmethionine D-ea-methylornithine D-a-methylphenylalanine D-a-methylproline D-a-methylserine D-a-methylthreonine D-ea-methyltryptophan D-rz-methyltyrosine D-a-methylvaline D-N-methylalanine D-N-methylar ginine D-N-methylasparagine D-N-methylaspartate D-N-methylcysteine D-N-methylglutamine D-N-methylglutamate D-N-methylhistidine Dtrp Dtyr DvaI Dmala Dmarg Dmasn Dmasp Dmcys Dmgln Dmbhis Dmile Dmleu Dmlys Dinmet Dmorn Dmphe Dmpro Dmser Dmthr Dmtrp Dmty Dmval Dnmala Dnumarg Dnniasn Dnmasp Dnmcys Dnmgln Dnmglu Dnmhis L-norvaline ix-methyl-aminoisobutyrate ix-methyl-y-axninobutyrate ea-methylcyclohexylaianine ix-methylcylcopentylaianine a-methyl-a-napthylalanine rc-methylpeniciliamine N-(4-aminobutyl)glycine N-(2-aminoethyl)glycine N-(3-aminopropyl)glycine N-amino-a-methylbutyrate a-napthylalanine N-benzylglycine N-(2-carbamylethyl)glycine N-(carbamyhnethyl)glycine N-(2-carboxyethyl)glycine N-(carboxymethyl)glycine N-cyclobutylglycine N-cycloheptylglycine N-cyclohexylglycine N-cyclodecylglycine N-cylcododecylglycine N-cyclooctylglycine N-cyclopropylglycine N-cycloundecylglycie N-(2,2-diphenylethyl)glycine N-(3 ,3-diphenylpropyl)glycine N-(3-guanidinopropyl)glycine I-hydroxyethyl)glycine N-(hydroxyethyl))glycine Nva Maib Mgabu Mchexa Mcpen Manap Mpen Nglu Naeg Nomn Nmaabu Anap Nphe Ngtn Nasn Nglu Nasp Ncbut Nchep Nchex Ncdec Ncdod Ncoct Ncpro Ncund Nbhm Nbhe Narg Nthr Nser V9
S
Se 0* WO 97/12037 WO 97/ 2037PCT/AU96/00607 12 0 00 4 0 food 09 *0 *0.
a 0 D-N-methylisoleucie D-N-methylleucine D-N-methyllysine N-methylcyclohexylalanine D-N-methylomithine N-methylglycine N-methylamninoisobutyrate 1 -methylpropyl)glycine N-(2-methylpropyl)glycine D-N-methyltryptophan D-N-methyltyrosine D-N-methylvaline y-aminobutyric acid L-t-butylglycine 15 L-ethylglycine L-homophenylalanine L-a-methylarginine L-ix-methylaspartate L-a-methylcysteine L-a-methylglutamine L-a-methylliistidine L-a-methylisoleucine L-a-methylleucine L-ix-methylinethionine L-nz-methylnorvaline L-e-methylphenylalaniiie L-a-methylserine L-a-methyltryptophan Dnmile Dnmleu Dnmlys Nmchexa Dnmorn Nala Nmaib Nile Nleu Dnmtrp Dnmtyr Dnmval Gabu Thug Etg Hphe Marg Masp Mcys Mgln Mhis Mile Mleu Mmet Mnva Mphe Mser N-(imidazolylethyl))glycine N-(3 -indolylyethyl)glycine N-methyl-y-aminobutyrate D-N-methyhnethionine N-methylcyclopentylaianine D-N-methylphenylalanine D-N-methylproline D-N-methylserine D-N-methylthreonine I -methylethyl)glycine N-rnethyla-napthylalanine N-methylpenicillarnine N-(p-hydroxyphenyl)glycine N-(thiomethyl)glycine penicillamnine L-ot-methylalanine L-a-methylasparagine L-et-methyl-t-butylglycine L-methylethylglycine L-rz-methylglutamate L-ix-methylhomophenylalanine N-(2-methylthioethyl)glycmne L-ix-methyllysine L-ix-.methyinorleucine L-ix-methylornithine L-ix-methylproline L-iz-methylthreonine Nhis Nhtrp Nmgabu Dnmmet Nmcpen Dnmphe Dnmpro Dnmser Dnmthr Nval Nmanap Nmpen Nhtyr Ncys Pen Mala Masn Mtbug Metg Mglu Mhphe Nmet Mlys Mnle Morn Mpro Mthr Mtyr Mtrp L-ix-methyltyrosine WO 97/12037 PCT/AU96/00607 -13 L-a-methylvaline Mval L-N-methylhomophenylalanine Nmhphe N-(N-(2,2-diphenylethyl) Nnbhm N-(N-(3,3-diphenylpropyl) Nnbhe carbamylmethyl)glycine carbamylmethyl)glycine I-carboxy- 1-(2,2-diphenyl- Nmbc ethylamino)cyclopropane Other derivatives contemplated by the present invention include a range of glycosylation variants from a completely unglycosylated molecule to a modified glycosylated molecule.
Altered glycosylation patterns may result from expression of recombinant molecules in different host cells.
Another embodiment of the present invention contemplates a method for modulating expression of NR2 in a human, said method comprising contacting the NR2 gene encoding NR2 with an effective amount of a modulator of NR2 expression for a time and under conditions sufficient to up-regulate or down-regulate or otherwise modulate expression of NR2. For example, a nucleic acid molecule encoding NR2 or a derivative thereof may be introduced into a cell to enhance NR2 related activities of that cell. Conversely, NR2 antisense sequences (or sense sequences for co-suppression) such as oligonucleotides may be introduced to decrease NR2-related activies of any cell expressing the endogenous NR2 gene.
Ribozymes may also be used.
Another aspect of the present invention contemplates a method of modulating activity of NR2 in a human, said method comprising administering to said mammal a modulating effective amount of a molecule for a time and under conditions sufficient to increase or decrease NR2 activity. The molecule may be a proteinaceous molecule or a chemical entity and may also be a derivative of NR2 or its receptor or a chemical analogue or truncation mutant of NR2 or its receptor.
WO 97/12037 PCT/AU96/00607 -14- Accordingly, the present invention contemplates a pharmaceutical composition comprising NR2 or a derivative thereof or a modulator of NR2 expression or NR2 activity and one or more pharmaceutically acceptable carriers and/or diluents. These components are referred to as the "active ingredients".
In this regard there is provided a pharmaceutical composition comprising a recombinant haemopoietin receptor as hereinbefore described or a ligand leptin) binding portion thereof and one or more pharmaceutically acceptable carriers and/or diluents.
In another embodiment, there is provided a pharmaceutical composition comprising a ligand leptin) to the recombinant haemopoietin receptor as hereinbefore described and one or more pharmaceutically acceptable carriers and/or diluents.
Still a further aspect of the present invention contemplates a method of treatment of an animal comprising administering to said animal a treatment effective amount of a recombinant haemopoietin receptor as hereinbefore described or a ligand binding portion thereof or a ligand leptin) to said haempoietic receptor for a time and under conditions sufficient S: for said treatment to be substantially effected or the conditions to be substantially *ameliorated.
The pharmaceutical forms suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion or may be in the form of a cream or other form suitable for topical application. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, .i ethanol, polyol (for example, glycerol, propylene glycol and liquid polyethylene glycol, and the like), suitable mixtures thereof, and vegetable oils. The proper fluidity can be maintained, for example, by the use of a coating such as licithin, by the maintenance of the required particle size in the case of dispersion and by the use of superfactants. The preventions of the WO 97/12037 PCT/AU96/00607 15 action of microorganisms can be brought about by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thirmerosal and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars or sodium chloride.
Prolonged absorption of the injectable compositions can be brought about by the use in the compositions of agents delaying absorption, for example, aluminum monostearate and gelatin.
Sterile injectable solutions are prepared by incorporating the active compounds in the required amount in the appropriate solvent with various of the other ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the various sterilized active ingredient into a sterile vehicle which contains the basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and the freeze-drying technique which yield a powder of the active ingredient plus any additional desired ingredient from previously sterile-filtered solution thereof.
When the active ingredients are suitably protected they may be orally administered, for example, with an inert diluent or with an assimilable edible carrier, or it may be enclosed in hard or soft shell gelatin capsule, or it may be compressed into tablets, or it may be incorporated directly with the food of the diet. For oral therapeutic administration, the active compound may be incorporated with excipients and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like. Such compositions and preparations should contain at least 1% by weight of active compound. The Spercentage of the compositions and preparations may, of course, be varied and may conveniently be between about 5 to about 80% of the weight of the unit. The amount of active compound in such therapeutically useful compositions in such that a suitable dosage will be obtained. Preferred compositions or preparations according to the present invention are prepared so that an oral dosage unit form contains between about 0.1 ug and 2000 mg of active compound.
WO 97/12037 PCT/AU96/00607 -16- The tablets, troches, pills, capsules and the like may also contain the components as listed hereafter: A binder such as gum, acacia, corn starch or gelatin; excipients such as dicalcium phosphate; a disintegrating agent such as corn starch, potato starch, alginic acid and the like; a lubricant such as magnesium stearate; and a sweetening agent such a sucrose, lactose or saccharin may be added or a flavouring agent such as peppermnnint, oil of wintergreen, or cherry flavouring. When the dosage unit form is a capsule, it may contain, in addition to materials of the above type, a liquid carrier. Various other materials may be present as coatings or to otherwise modify the physical form of the dosage unit. For instance, tablets, pills, or capsules may be coated with shellac, sugar or both. A syrup or elixir may contain the active compound, sucrose as a sweetening agent, methyl and propylparabens as preservatives, a dye and flavouring such as cherry or orange flavour. Of course, any material used in preparing any dosage unit form should be pharmaceutically pure and substantially non-toxic in the amounts employed. In addition, the active compound(s) may be incorporated into sustained-release preparations and formulations.
The present invention also extends to forms suitable for topical application such as creams, o lotions and gels.
S "Pharmaceutically acceptable carriers and/or diluents include any and all solvents, dispersion *ee 20 media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like. The use of such media and agents for pharmaceutical active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active ingredient use thereof in the therapeutic compositions is contemplated. Supplementary active ingredients can also be incorporated into the compositions.
It is especially advantageous to formulate parenteral compositions in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the mammalian subjects to be treated; each unit containing a predetermined quantity of active material calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The WO 97/12037 PCT/AU96/00607 -17specification for the novel dosage unit forms of the invention are dictated by and directly dependent on the unique characteristics of the active material and the particular therapeutic effect to be achieved, and the limitations inherent in the art of compounding such an active material for the treatment of disease in living subjects having a diseased condition in which bodily health is impaired.
The principal active ingredient is compounded for convenient and effective administration in effective amounts with a suitable pharmaceutically acceptable carrier in dosage unit form as hereinbefore disclosed. A unit dosage form can, for example, contain the principal active compound in amounts ranging from 0.5 pg to about 2000 mg. Expressed in proportions, the active compound is generally present in from about 0.5 pg to about 2000 mg/ml of carrier.
In the case of compositions containing supplementary active ingredients, the dosages are determined by reference to the usual dose and manner of administration of the said ingredients.
The pharmaceutical composition may also comprise genetic molecules such as a vector capable of transfecting target cells where the vector carries a nucleic acid molecule capable of modulating NR2 expression or NR2 activity. The vector may, for example, be a viral vector.
S Still another aspect of the present invention is directed to antibodies to NR2 and its derivatives or its ligands leptin). Such antibodies may be monoclonal or polyclonal and may be selected from naturally occurring antibodies to NR2 or may be specifically raised to NR2 or derivatives thereof In the case of the-latter, NR2 or its derivatives may first need to be associated with a carrier molecule. The antibodies and/or recombinant NR2 or its derivatives of the present invention are particularly useful as therapeutic or diagnostic agents.
For example, NR2 and its derivatives can be used to screen for naturally occurring antibodies to NR2. These may occur, for example in some autoimmune diseases. Alternatively, specific antibodies can be used to screen for NR2. Techniques for such assays are well known in the WO 97/12037 PCT/AU96/00607 18art and include, for example, sandwich assays and ELISA. Knowledge of NR2 levels may be important for diagnosis of certain cancers or a predisposition to cancers or for monitoring certain therapeutic protocols.
Antibodies to NR2 of the present invention may be monoclonal or polyclonal. Alternatively, fragments of antibodies may be used such as Fab fragments. Furthermore, the present invention extends to recombinant and synthetic antibodies and to antibody hybrids. A "synthetic antibody" is considered herein to include fragments and hybrids of antibodies. The antibodies of this aspect of the present invention are particularly useful for immunotherapy and may also be used as a diagnostic tool for assessing the receptor or receptor-ligand interaction or monitoring the program of a therapeutic regimin.
For example, specific antibodies can be used to screen for NR2 proteins. The latter would be important, for example, as a means for screening for levels of NR2 in a cell extract or other biological fluid or purifying NR2 made by recombinant means from culture supernatant fluid.
Techniques for the assays contemplated herein are known in the art and include, for example, sandwich assays and ELISA.
It is within the scope of this invention to include any second antibodies (monoclonal, *o 20 polyclonal or fragments of antibodies or synthetic antibodies) directed to the first mentioned antibodies discussed above. Both the first and second antibodies may be used in detection assays or a first antibody may be used with a commercially available anti-immunoglobulin antibody. An antibody as contemplated herein includes any antibody specific to any region of NR2.
Both polyclonal and monoclonal antibodies are obtainable by immunization with the enzyme or protein and either type is utilizable for immunoassays. The methods of obtaining both types of sera are well known in the art. Polyclonal sera are less preferred but are relatively easily prepared by injection of a suitable laboratory animal with an effective amount of NR2, or antigenic parts thereof, collecting serum from the animal, and isolating specific sera by any WO 97/12037 PCT/AU96/00607 19of the known immunoadsorbent techniques. Although antibodies produced by this method are utilizable in virtually any type of immunoassay, they are generally less favoured because of the potential heterogeneity of the product.
The use of monoclonal antibodies in an immunoassay is particularly preferred because of the ability to produce them in large quantities and the homogeneity of the product. The preparation of hybridoma cell lines for monoclonal antibody production derived by fusing an immortal cell line and lymphocytes sensitized against the immunogenic preparation can be done by techniques which are well known to those who are skilled in the art.
Another aspect of the present invention contemplates a method for detecting NR2 in a biological sample from a subject said method comprising contacting said biological sample with an antibody specific for NR2 or its derivatives or homologues for a time and under conditions sufficient for an antibody-NR2 complex to form, and then detecting said complex.
The presence of NR2 may be accomplished in a number of ways such as by Western blotting and ELISA procedures. A wide range of immunoassay techniques are available as can be seen by reference to US Patent Nos. 4,016,043, 4, 424,279 and 4,018,653. These, of course, includes both single-site and two-site or "sandwich" assays of the non-competitive types, as 0 20 well as in the traditional competitive binding assays. These assays also include direct binding of a labelled antibody to a target.
Sandwich assays are among the most useful and commonly used assays and are favoured for use in the present invention. A number of variations of the sandwich assay technique exist, and all are intended to be encompassed by the present invention. Briefly, in a typical forward assay, an unlabelled antibody is immobilized on a solid substrate and the sample to be tested brought into contact with the bound molecule. After a suitable period of incubation, for a period of time sufficient to allow formation of an antibody-antigen complex, a second antibody specific to the antigen, labelled with a reporter molecule capable of producing a detectable signal is then added and incubated, allowing time sufficient for the formation of WO 97/12037 PCT/AU96/00607 another complex of antibody-antigen-labelled antibody. Any unreacted material is washed away, and the presence of the antigen is determined by observation of a signal produced by the reporter molecule. The results may either be qualitative, by simple observation of the visible signal, or may be quantitated by comparing with a control sample containing known amounts of hapten. Variations on the forward assay include a simultaneous assay, in which both sample and labelled antibody are added simultaneously to the bound antibody. These techniques are well known to those skilled in the art, including any minor variations as will be readily apparent. In accordance with the present invention the sample is one which might contain NR2 including cell extract, tissue biopsy or possibly serum, saliva, mucosal secretions, lymph, tissue fluid and respiratory fluid. The sample is, therefore, generally a biological sample comprising biological fluid, cell extract, bone marrow or lymph, tissue extract (e.g.
from kidney, liver, spleen, etc), fermentation fluid and supernatant fluid such as from a cell culture and cell conditioned medium.
In the typical forward sandwich assay, a first antibody having specificity for the NR2 or antigenic parts thereof, is either covalently or passively bound to a solid surface. The solid surface is typically glass or a polymer, the most commonly used polymers being cellulose, polyacrylamide, nylon, polystyrene, polyvinyl chloride or polypropylene. The solid supports may be in the form of tubes, beads, discs of microplates, or any other surface suitable for S 20 conducting an immunoassay. The binding processes are well-known in the art and generally consist of cross-linking covalently binding or physically adsorbing, the polymer-antibody complex is washed in preparation for the test sample. An aliquot of the sample to be tested is then added to the solid phase complex and incubated for a period of time sufficient 2- 40 minutes) and under suitable conditions 25"C) to allow binding of any subunit present in the antibody. Following the incubation period, the antibody subunit solid phase is washed and dried and incubated with a second antibody specific for a portion of the hapten. The second antibody is linked to a reporter molecule which is used to indicate the binding of the second antibody to the hapten.
WO 97/12037 PCT/AU96/00607 -21 An alternative method involves immobilizing the target molecules in the biological sample and then exposing the immobilized target to specific antibody which may or may not be labelled with a reporter molecule. Depending on the amount of target and the strength of the reporter molecule signal, a bound target may be detectable by direct labelling with the antibody.
Alternatively, a second labelled antibody, specific to the first antibody is exposed to the targetfirst antibody complex to form a target-first antibody-second antibody tertiary complex. The complex is detected by the signal emitted by the reporter molecule.
By "reporter molecule" as used in the present specification, is meant a molecule which, by its chemical nature, provides an analytically identifiable signal which allows the detection of antigen-bound antibody. Detection may be either qualitative or quantitative. The most commonly used reporter molecules in this type of assay are either enzymes, fluorophores or radionuclide containing molecules radioisotopes) and chemiluminescent molecules.
In the case of an enzyme immunoassay, an enzyme is conjugated to the second antibody, generally by means of glutaraldehyde or periodate. As will be readily recognized, however, a wide variety of different conjugation techniques exist, which are readily available to the skilled artisan. Commonly used enzymes include horseradish peroxidase, glucose oxidase, beta-galactosidase and alkaline phosphatase, amongst others. The substrates to be used with the specific enzymes are generally chosen for the production, upon hydrolysis by the corresponding enzyme, of a detectable colour change. Examples of suitable enzymes include alkaline phosphatase and peroxidase. It is also possible to employ fluorogenic substrates, which yield a fluorescent product rather than the chromogenic substrates noted above. In all cases, the enzyme-labelled antibody is added to the first antibody hapten complex, allowed to bind, and then the excess reagent is washed away. A solution containing the appropriate substrate is then added to the complex of antibody-antigen-antibody. The substrate will react with the enzyme linked to the second antibody, giving a qualitative visual signal, which may S* .i be further quantitated, usually spectrophotometrically, to give an indication of the amount of hapten which was present in the sample. "Reporter molecule" also extends to use of cell agglutination or inhibition of agglutination such as red blood cells on latex beads, and the like.
WO 97/12037 PCT/AU96/00607 -22- Alternately, fluorescent compounds, such as fluorescein and rhodamine, may be chemically coupled to antibodies without altering their binding capacity. When activated by illumination with light of a particular wavelength, the fluorochrome-labelled antibody adsorbs the light energy, inducing a state to excitability in the molecule, followed by emission of the light at a characteristic colour visually detectable with a light microscope. As in the EIA, the fluorescent labelled antibody is allowed to bind to the first antibody-hapten complex. After washing off the unbound reagent, the remaining tertiary complex is then exposed to the light of the appropriate wavelength the fluorescence observed indicates the presence of the hapten of interest. Immunofluorescene and EIA techniques are both very well established in the art and are particularly preferred for the present method. However, other reporter molecules, such as radioisotope, chemiluminescent or bioluminescent molecules, may also be employed.
The present invention also contemplates genetic assays such as involving PCR analysis to detect NR2 gene or its derivatives. Alternative methods or methods used in conjunction include direct nucleotide sequencing or mutation scanning such as single stranded conformation polymorphoms analysis (SSCP) as specific oligonucleotide hybridisation, as 9* methods such as direct protein truncation tests. Such genetic tests may be important, for example, in genetic screening of animals humans) for non-expression or substantial absence of expression or expression of mutant forms of NR2 leading to conditions such as 20 obesity or other effects of leptin-receptor interaction.
The nucleic acid molecules of the present invention may be DNA or RNA. When the nucleic acid molecule is in DNA form, it may be genomic DNA or cDNA. RNA forms of the nucleic acid molecules of the present invention are generally mRNA.
Although the nucleic acid molecules of the present invention are generally in isolated form, they may be integrated into or ligated to or otherwise fused or associated with other genetic molecules such as vector molecules and in particular expression vector molecules. Vectors and expression vectors are generally capable of replication and, if applicable, expression in one or both of a prokaryotic cell or a eukaryotic cell. Preferably, prokaryotic cells include E.
WO 97/12037 PCT/AU96/00607 -23 coli, Bacillus sp and Pseudomonas sp. Preferred eukaryotic cells include yeast, fungal, mammalian and insect cells.
Accordingly, another aspect of the present invention contemplates a genetic construct comprising a vector portion and a mammalian and more particularly a human NR2 gene portion, which NR2 gene portion is capable of encoding an NR2 polypeptide or a functional or immunologically interactive derivative thereof.
Preferably, the NR2 gene portion of the genetic construct is operably linked to a promoter on the vector such that said promoter is capable of directing expression of said NR2 gene portion in an appropriate cell.
In addition, the NR2 gene portion of the genetic construct may comprise all or part of the gene fused to another genetic sequence such as a nucleotide sequence encoding glutathione-Stransferase or part thereof or a cytokine or another haempoietic receptor. Hybrid receptor molecules are particularly useful in the development of multi functional therapeutic and .diagnostic agents.
The present invention extends to such genetic constructs and to prokaryotic or eukaryotic cells 20 comprising same.
The present invention also extends to any or all derivatives of NR2 including mutants, part, fragments, portions, homologues and analogues or their encoding genetic sequence including single or multiple nucleotide or amino acid substitutions, additions and/or deletions to the naturally occurring nucleotide or amino acid sequence.
The NR2 and its genetic sequence of the present invention will be useful in the generation of a range of therapeutic and diagnostic reagents and will be especially useful in the detection of a corresponding ligand. For example, recombinant NR2 may be bound or fused to a reporter molecule capable of producing an identifiable signal, contacted with a biological sample WO 97/12037 PCT/AU96/00607 -24putatively containing a ligand and screening for binding of the labelled NR2 to the ligand.
Alternatively, labelled NR2 may be used to screen expression libraries of putative ligand genes or functional parts thereof.
In another embodiment, the NR2 is first immobilised. According to this embodiment, there is provided a method comprising contacting a biological sample containing a putative ligand with said haempoietic receptor or a ligand binding portion thereof immobilised to a solid support for a time and under conditions sufficient for a complex to form between said receptor and said ligand if said ligand is present in said biological sample, eluting bound ligand and isolating same.
Soluble NR2 polypeptides are also contemplated to be useful in the treatment of disease, injury or abnormality in the nervous system, e.g. in relation to central or peripheral nervous system to treat Cerebral Palsy, trauma induced paralysis, vascular ischaemia associated with stroke, neuronal tumours, motoneurone disease, Parkinson's disease, Huntington's disease, Alzheimer's disease, Multiple Sclerosis, peripheral neuropathies associated with diabetes, heavy metal or alcohol toxicity, renal failure and infectious diseases such as herpes, rubella, measles, chicken pox, HIV or HTLV-1. The NR2 polypeptides may also be important for regulating cytokine activity such as leptin activity, modulating haempoiesis and/or regulating 20 or modulating adipose tissue.
S As stated above, the NR2 or its ligand of the present invention oi their functional derivatives may be provided in a pharmaceutical composition together with one or more pharmaceutically Sacceptable carriers and/or diluents. In addition, the present invention contemplates a method of treatment comprising the administration of an effective amount of NR2 of the present invention. The present invention also extends to antagonists and agonists of NR2 and/or its .i ligand and their use in therapeutic compositions and methodologies.
A further aspect of the present invention contemplates the use of NR2 or its functional derivatives in the manufacture of a medicament for the treatment of NR2 mediated conditions WO 97/12037 PCT/AU96/00607 defective or deficient.
The present invention is further described with reference to the following non-limiting Figures and/or Examples.
In the Figures: Figure 1 is a schematic representation showing size of NR2 cDNA clones isolated and schematic structure of the predicted NR2 protein.
Figure 2 is a representation of the nucleotide sequence and corresponding amino acid sequence of the haemopoietin receptor.
Figure 3 is a representation of a FACS analysis of NR2 expression by BA/F 3 cells.
Figure 4 is a photographic representation of a silver-stained gel of NR2 expression by BA/F 3 Scells.
Figure 5 is a graphical representation showing specific binding of 125 human leptin to Ba/F3 cells stably transfected to express hNR2 on their cell surface.
Saturation binding curve for '5I h leptin binding to Ba/F3/hNR2 cells at 23 C.
Scatchard transformation of the data in The slope of the curve indicates an equilibrium dissociation constant (KD) of 120 pM.
Figure 6 is a graphical representation showing specific binding of 12sI human leptin to COS-7 cells transiently transfected to express hNR2 on their cell surface or to purified soluble human NR2 Saturation binding curves at 23"C are shown.
Figure 7 is a photographic representation showing cross species conservation of the NR2 gene. Southern blot of genomic DNA probed with a specific cDNA probe for NR2.
WO 97/12037 PCT/AU96/00607 -26- Figure 8 is a diagrammatic representation of the NR2 locus. A map of the NR2 locus, showing positioning of the clones isolated from genomic libraries. The results of the restriction enzyme mapping using NcoI and the positioning of the exons on these fragments are also shown.
Figure 9 is a photographic representation showing expression of leptin receptor (NR2) in murine tissues.
*o WO 97/12037 WO 9712037PCT/AU96/00607 27 The following single and three letter abbreviations for amino acid residues are used in the specification: Amino Acid Three-letter One-letter Abbreviation Symbol Alanine Ala A Arginine Arg R Asparagine Asn N Aspartic, acid Asp D Cysteine Cys C Glutamine Gin
Q
Glutamic, acid Glu E Glycine Gly G Histidine His H :Isoleucine Ile I Leucine Leu L Lysine Lys
K
Methionine Met M Phenylalanine Phe
F
Proline Pro
P
Serine Ser
S
*.Threonine Thr
T
Tryptophan Trp
W
***Tyrosine Tyr
Y
.:Valine Val
V
Any residue Xaa
X
WO 97/12037 WO 9712037PCT/AU96/00607 28 TABLE 2 SEQUENCE OF OLIGONUCLEOTIDES OLIGONUCLEOTIDE SEQUENCE SEQ ID NOs HYB2 5 '-(AIG)CTCCA(AIG)TC(AIG)CTCCA-3'
I
T3 5'-TAATACGACTCACTATAGGGAGA-3' 2 T7 5 '-ATTAACCCTCACTAAAGGGA-3' 3 721 5'-ACTAGCAGGGATGTAGCTGAG-3' 4 722 5'-CTCAGCTACATCCCTGCTAGT-3' 761 5 '-CTGCTCCTATGATACCT-3' 6 875 5'-CCTCTTCCATCTTATTGCTTGG-3' 7 939 5'-ATCGGTCGTGACATACAAGG-3' 8 1056 5 'AGCTAAGCTTTCTAGATATCCAATTACTCCTTGGAGA..3' 9 *1092 5'-AGCTTCTAGATCAATCACTCTGGTGTTTTTCAAT..3' 1094 5'-AGCTTCTAGATCAAACTTTTATATCCATGACAAC..3' 11 EXAMPLE 1 CLONING OF A HUMAN N112 (HLAEMOPOLEETIN RECEPTOR) cDNA A cDNA library constructed from mRNA from a the bone marrow of a patient recovering from chemotherapy was constructed by C. G. Begley, Cancer Research Unit WEH in IZAP (Stratagene, CA, USA) were used to infect Fscherichia coli of the strain LE392. Infected bacteria were grown on twenty 150 mm. agar plates, to give approximately 50,000 plaques per .*:plate. Plaques were then transferred to duplicate 150 mm diameter nylon membranes (Colony/Plaque Screen~m, NEN Research Products, MA, USA), bacteria were lysed and the DNA was denatured fixed by autoclaving at I 00 0 C for I min with dry exhaust. The filters were rinsed twice in 0. 1%(wlv) sodium dodecyl sulfate (SDS), 0. 1 x SSC (S SC is 150 mM WO 97/12037 PCT/AU96/00607 -29sodium chloride, 15 mM sodium citrate dihydrate) at room temperature and pre-hybridised overnight at 42 0 C in 6 x SSC containing 2 mg/ml bovine serum albumin, 2 mg/ml Ficoll, 2 mg/ml polyvinylpyrrolidone, 100 mM ATP, 10 mg/ml tRNA, 2 mM sodium pyrophosphate, 2 mg/ml salmon sperm DNA, 0.1% SDS and 200 mg/ml sodium azide. The pre-hybridisation buffer was removed. 1.2 mg of the degenerate oligonucleotides for hybridisation (HYB2; Table 2 above) were phosphorylated with T4 polynucleotide kinase using 960 mCi of g 32 p ATP (Bresatec, Australia). Unincorporated ATP was separated from the labelled oligonucleotide using a pre-packed gel filtration column (NAP-5; Pharmacia, Uppsala, Sweden). Filters were hybridised overnight at 37 0 C in 80 ml of the prehybridisation buffer containing and 106 -107 cpm/ml of labelled oligonucleotide. Filters were briefly rinsed twice at room temperature in 6 x SSC, SDS, twice for 30 min at 45 0 C in a shaking waterbath containing 1.5 1 of the same buffer and then briefly in 6 x SSC at room temperature.
Filters were then blotted dry and exposed to autoradiographic film at -70 0 C using intensifying screens, for 7 14 days prior to development.
Plaques that appeared to hybridise to the probe on duplicate filters were picked and eluted for 2 days at 4°C in 0.5 ml of 100 mM NaCI, 10 mM MgCl 2 10 mM Tris.HC1 pH7.4 containing gelatin and 0.5% chloroform. 5 ml aliquots of each eluate was used as the substrate for two PCR reactions containing 5 ml of 10 x concentrated PCR buffer (Boehringer 20 Mannheim GmbH, Mannheim, Germany), 1 ml of 10 mM dATP, dCTP, dGTP and dTTP, ml of the oligonucleotides HYB2 and either T3 or T7 at a concentration of 100 mg/ml, 0.5 ml of Taq polymerase (Boehringer Mannheim GmbH) and water to a final volume of 50 ml. PCR was carried out in a Perkin-Elmer 9600 by heating the reactions to 96°C for 2 min and then for 25 cycles at 96 0 C for 30 sec, 55 0 C for 30 sec and 72°C for 2 min. The reactions were then 25 electrophoresed on a 1 low melting point agarose gel in TAE. Any positive products were excised, the gel slice was melted and 2 ml was used as the substrate for a second PCR reaction using conditions identical to the first. The product from the second reaction was purified using an ultrafree-MC centrifugal filtration unit (Millipore Corp.) by centrifugation for 15 min at 2000 g in an eppendorf centrifuge, adding 0.5 ml of 10 mM Tris.HC1, 1 mM EDTA pH8 and recentrifuging. This procedure was repeated three times and the DNA was WO 97/12037 PCT/AU96/00607 recovered in 50 ml of 10 mM Tris.HCl, 1 mM EDTA pH8.
Approximately 500 ng of DNA from each PCR reaction was sequenced using a fmol sequencing kit (Promega Corporation, WI, USA), according to the manufacturer's instructions with the 3 P-labelled oligonucleotide primer HYB2. The products were resolved on a 6% w/v polyacrylamide gel and the sequence of each clone was analysed using the Blast database comparison programs and the translation function of the Wisconsin suite of DNA programs.
The sequence of the PCR product derived from the primary plaque eluate number CF.32 appeared to be novel since it had no homologues in the databases of DNA sequences that were searched, and upon inspection of the sequence of the conceptually translated products appeared also to be a member of the haemopoietin receptor family. This clone was given the name of new receptor 2 or NR2.
The positively hybridising bacteriophage present in the eluate from the primary plug NR2-CF- 32-1 was purified using a second round of screening performed in a manner identical to the first, except that plaques were grown on smaller, 82 mm, plates of agar. Once purified DNA, the positive cDNA cloned into the plasmid pBluescript was excised from the X-ZAP II bacteriophage according to the manufacturer's instructions (Statagene). A CsCI purified preparation of the DNA was made and this was sequenced on both strands. Sequencing was 20 performed using an Applied Biosystems automated DNA sequencer, with fluorescent dideoxynucleotide analogues according to the manufacturer's instructions. The DNA sequence was analysed using software supplied by Applied Biosystems.
EXAMPLE 2 ISOLATION OF ADDITIONAL NR2 cDNAS NR2-CF.32 did not appear to contain the entire coding region of the novel receptor. In order to identify other cDNA libraries containing cDNA clones for NR2 we performed PCR upon 1 ml aliquots of 1-bacteriophage cDNA libraries made from mRNA from various human tissues and using oligonucleotides 722 and 761, designed from NR2-CF-32-1, as primers. The oligonucleotides are defined in Table 2, above. Reactions contained the same elements as WO 97/12037 PCT/AU96/00607 -31 described above and were performed in an identical manner. In addition to the original library, five other cDNA libraries appeared to contain NR2 cDNAs. These were screened using a 2 P-labelled oligonucleotide 721 and 761 designed from the 5'-end and the 3'end of the sequence derived from NR2-CF.32, using conditions identical to those described in section except that filters were washed at 55 0 C rather than 45 Again, as described in section positively hybridising plaques were purified, the cDNAs were recovered and cloned into plasmids pBluescript II or pUC19. Ten independent cDNA clones were sequenced on both strands. Further clones were isolated in a similar manner by screening libraries with oligonucleotide 875 and 939.
The extent of each clone is illustrated in Figure 1 and a composite sequence is shown in Figure 2. NR2 clearly has all the features of a member of the haemopoietin receptor family.
EXAMPLE 3 ANALYSIS OF THE EXPRESSION PATTERN OF NR2 mRNA Northern blots of mRNA from various human tissues and cell lines were hybridised with a random-primed human NR2 cDNA fragment from the internal EcoR I site to the Hpa I site (Figure Using the protocol described previously by Hilton et al. two human NR2 mRNA species were observed to be expressed at a low level in a range of adult tissues, and 20 at higher levels in foetal tissues such as the lung and liver. Figure 9 shows expression of NR2 in various mouse tissues using human NR2 cDNA as probe. Interestingly among a series of human haemopoietin cell lines the megakaryocytic cell line MEGO 1 expressed high levels of NR2 mRNA suggesting that NR2 and its cognate ligand may play a role in the regulation of the megakaryocyte proliferation, differentiation and/or function.
WO 97/12037 PCT/AU96/00607 -32- EXAMPLE 4 GENERATION OF PLASMIDS DIRECTING THE EXPRESSION OF FULL-LENGTH AND SECRETED FORMS HUMAN NR2 Since antibodies to NR2 were not available to monitor expression, constructs were engineered to express full length and two soluble versions of NR2 with an N-terminal "FLAG" epitope (International Biotechnologies/ Eastman Kodak, New Haven CT). First, a derivative of the mammalian expression vector pEF-BOS was generated so that it contained DNA encoding the signal sequence ofmurine IL-3 (MVLASSTTSIHTMLLLLMLFHLGLQASIS [SEQ ID NO.
14]) and the FLAG epitope (DYKDDDDK [SEQ ID NO. 15]) followed by a unique Xba I cloning site. This vector was named pEF/IL3SIG/FLAG.
The 5'end of the mature NR2 coding region was generated by PCR using primers 1056 and 721 on clone 60-58-7 (Figure The EcoR I/Hpa I fragment of clone 60-55-7-6 containing the 3' end of the NR2 coding region and a portion of the 3'-untranslated region was cloned into the EcoR I/Smal digested pBluescript (Figure This construct was digested with Hind III and EcoR I and into it was cloned the 5'-NR2 PCR product digested with the same enzymes. The resulting construct was digested with Xba I to yield a fragment which contained the coding region of human NR2 from Y26 to the natural last amino acid L897 (Figure 1) and a segment of 3'-untranslated region and was cloned into the Xba I site of pEF/IL3 SIG/FLAG S 20 to give pEF/IL3SIG/FLAG/NR2/897. A soluble derivative of human NR2 was also engineered. PCR was carried out either using primers 1056 and 1092 to amplify the predicted mature coding region of the extracellular portion of human NR2 (Y26 to D839; Figure 1).
The PCR products were digested with Xba I and subcloned into Xba I digested pEF/IL3SIG/FLAG to give pEF/IL3SIG/FLAG/NR2/839. The identity of each construct was confirmed by dideoxy sequencing.
WO 97/12037 PCT/AU96/00607 -33 EXAMPLE TRANSIENT EXPRESSION OF FULL LENGTH AND SECRETED FORMS OF HUMAN NR2 IN COS CELLS In order to confirm that full length and soluble NR2 could be produced using the expression vectors pEF/IL3SIG/FLAG/NR2/897 and pEF/IL3SIG/FLAG/NR2/839, COS cells were transiently transfected with these constructs. Briefly, COS cells from a confluent 175 cm2 tissue culture flask were resuspended in PBS and electroporated (BioRad Gene pulser; 500 mF, 300 V) with 20 mg of uncut pEF/IL3SIG/FLAG/NR2/897 or pEF/IL3SIG/FLAG/NR2/839 in a 0.4 cm cuvette (BioRad). After 2 to 3 days at 37 0 C in a fully humidified incubator containing 10% v/v CO 2 in air cells were used for analyses of protein expression. Conditioned medium was collected by centrifugation and stored sterile at 4°C. Cells were also harvested and lysed for 5 min in 500 ml of 50 mM Tris.HCl pH7.4 containing 150 mM NaCI, 2 mM EDTA and 1% v/v Triton X-100. The intact nuclei were removed by centrifugation at 10,000g for 5 min. 500 ml of 50 mM Tris.HCl pH7.4 containing 150 mMNaCI, 2 mM EDTA, 1% v/v Triton X-100, 1% w/v sodium deoxycholate and 0.2% w/v SDS. 15 ml of anti-FLAG M2 affinity gel (International Biotechnologies/ Eastman Kodak, New Haven CT) was then added to the cell extract or to 1 ml of conditioned medium and precipitation was carried out overnight at 4°C. The affinity gel was then washed three times in cold PBS and the precipitated protein was eluted by resuspending the gel in 80 ml of 20 100 mM sodium phosphate pH7.2, 10 mM EDTA, 0.1% w/v SDS and 1% 2-mercaptoethanol and boiling for 5 min. The supernatant was removed and 8 ml of 10% b-octyl glucoside was .o added. One half of each sample was incubated for 16 hours with 0.6 U of N-Glycanase-F (Boehringer-Mannheim), while the remainder was left untreated. An equal volume of 2x SDS-PAGE sample buffer was added to the samples which were then boiled and 25 electrophoresed on pre-cast 4-15% w/v polyacrylamide gels (BioRad). The resolved proteins were then electroblotted onto Immobolon membranes, which were then blocked with 5% w/v skim milk, 0.1% v/v Tween 20 in PBS, rinsed and incubated with 5 ml of anti-FLAG M2 antibody in 2.5 ml of PBS containing 0.1% v/v Tween 20, rinsed and incubated with peroxidase-conjugated human anti-mouse Ig in 5% w/v skim milk, 0.1% v/v Tween 20 in PBS, rinsed and incubated with ECL reagent for 1 min. Filters were then blotted dry and WO 97/12037 PCT/AU96/00607 -34exposed to autoradiographic film for 1 min.
COS cells that were mock transfected contained no reactive protein, while COS cells transfected with pEF/IL3SIG/FLAG/NR2/897 expressed an immunoreactive protein of between 120,000 and 140,000 molecular weight. Deglycosylation with N-Glycanase-F resulted in a reduction in the apparent molecular weight to approximately 110,000 close to that predicted from the cDNA sequence of NR2. The immunoreactivity observed was completely inhibited by inclusion of an excess of the FLAG peptide during the immunoprecipitation step.
No specific immunoreactive proteins could be detected in the medium conditioned by COS cells transfected with pEF/IL3SIG/FLAG/NR2/897. In contrast immunoreactive proteins were found in the medium and the cell pellet of COS cells transfected with DNA encoding the secreted form of NR2 pEF/IL3SIG/FLAG/NR2/839. The secreted form of NR2, as predicted, exhibited a lower apparent molecular weight than full length NR2, 110,000 to 120,000. This again decreased upon deglycosylation, to approximately 100,000.
COS cells transfected with pEF/IL3SIG/FLAG/NR2/897 were also examined for cell surface expression ofNR2 by immunofluorescence staining. 5 x 105 COS cells were resuspended in 100 ml of PBS containing 5% fetal calf serum and incubated with FITC-conjugated anti- FLAG M2 antibody for 45 min on ice, the cells were fixed and examined using a fluorescence microscope. No positive cells were observed in mock transfected samples, while approximately 10% of COS cells transfected with pEF/IL3SIG/FLAG/NR2/897 stained brightly positive. This data was consistent with the expected transient transfection efficiency of COS cells using electroporation.
EXAMPLE 6 STABLE EXPRESSION OF FULL LENGTH HUMAN NR2 As described below certain routes to the identification of the NR2 ligand require stable expression of full-length NR2 in haemopoietin cell lines and the production and purification of large (mg) amounts of secreted NR2. Stable transfection of the pEF/IL3SIG/FLAG/NR2/897 and pEF/IL3SIG/FLAG/NR2/839 plasmids was achieved by WO 97/12037 PCT/AU96/00607 electroporation. Briefly, the plasmids were linearised by digestion with the restriction enzyme Aat II. 20 mg of the linearised pEF/IL3SIG/FLAG/NR2/897 plasmid and 2 mg of pPGKpuropA, pPGKneopA or pPGKhygropA (plasmids directing the expression of the puromycin, neomycin and hygromycin resistance genes) were electroporated into 4 x 10 6 parental Ba/F3 cells, Ba/F3 cells engineered to express human gpl30 with or without coexpression of the human LIF receptor, Ba/F3 cells expressing the human b-chain common to the IL-3, IL-5 and GM-CSF receptors, Ba/F3 cells expressing the human IL-2 receptor band g-chains, CTLL cells or CHO cells. Briefly, cells were washed twice in ice-cold PBS and resuspended in PBS at 5 x 106 per ml. 4 x 106 cells were aliquoted into 0.4 mm electoporation cuvettes with the DNA. DNA and cells were incubated for 10 min on ice and electroporated at 270 V and 960 mF in a Bio-Rad Gene-Pulser (Bio-Rad Laboratories, CA, USA). The cells were mixed with 1 ml of culture medium, centrifuged through 3 ml of FCS and resuspended in 100 ml of culture medium. Cells were then aliquoted into four 24 well dishes. After two days, selection was commenced by the addition puromycin to a concentration of 20 mg/ml, G418 to a concentration of 1.2 mg/ml or hygromycin to a concentration of 1 mg/ml. After 14 days, clones of proliferating cells were transferred to flasks and after expansion were o* tested for receptor expression.
*FACS analysis using the anti-FLAG M2 antibody (Figure 3) illustrates that Ba/F3 cells 20 transfected with the pEF/IL3SIG/FLAG/NR2/897 express NR2 on the cell surface. Similar results have been obtained with other cell lines. As with COS cells, CHO cells transfected *0 with pEF/IL3SIG/FLAG/NR2/839 secrete the NR2 extracellular domain. The extracellular domain of NR2 has been purified on an anti-FLAG M2 antibody affinity column using the FLAG peptide as the means of elution. This results in a high degree of purification of the 25 NR2 extracellular domain as seen in the silver-stained poly-acrylamide gel illustrated in Figure 4.
66 WO 97/12037 PCT/AU96/00607 -36- EXAMPLE 7 STRATEGIES FOR ISOLATION OF THE LIGAND FOR NR2 The stable expression of full-length and secreted NR2 enables steps to be taken to generate specific monoclonal antibodies to NR2 and allows a number of strategies to be employed to identify the cognate ligands of NR2.
Expression of NR2 in factor dependent cell lines; A variety of haemopoietin cell lines have been described which are dependent on the presence of exogenous growth factor for survival and proliferation in vitro. Among these are the murine cell lines Ba/F3, FDCP-1, 32D, CTLL, NFS-60, B6SutA, DA-1 and DA-3 and the human cell lines M07 and TF-1. FLAG-tagged murine and human NR2 may be stably expressed in each of these cell lines. The capacity of medium conditioned by a variety of murine and human cell lines and tissues to stimulate the survival and division of factor dependent cell lines expressing NR2 will be compared to the ability of the same medium to stimulate parental cell lines that do not express NR2. Medium that shows a greater ability to stimulate the proliferation cells expressing NR2 will be considered as a potential source of NR2.
o .e* NR2 has also been co-expressed in Ba/F3 cells with the LIF receptor a-chain and gpl30, with S 20 the IL-2 receptor b- and g-chains of the IL-2 receptor and with the common b-chain of the IL- 3, IL-5 and GM-CSF receptors. Again conditioned medium will be tested for their ability to stimulate the proliferation of these cell lines.
Identification of the NR2 ligand using the Cytosensor; 0.0 25 The haemopoietin cell lines expressing NR2 described above and additional non-haemopoietin cell lines engineered to express NR2 will be used in conjunction with the Cytosensor to screen conditioned medium for the presence of a ligand capable of altering cellular ion fluxes.
Positive conditioned medium will be considered as a potential source of NR2 ligands.
WO 97/12037 PCT/AU96/00607 -37- Selection of Ba/F3 cells expressing the NR2 ligand; Ba/F3 cells expressing NR2 with or without additional receptor components will be mutated with EMS or with a retrovirus. Mutants that are capable of proliferation in the absence of added growth factor will be selected. The medium from such clones will then be tested for their ability to stimulate the proliferation of Ba/F3 cells expressing NR2 with or without additional receptor components compared with the corresponding Ba/F3 cells that do not express NR2. Positive conditioned medium will be considered as a potential source of the NR2 ligand.
Expression of NR2 in cell lines that may be induced to differentiate; Similar experiments may be performed by expressing FLAF-tagged NR2 in cells that may be induced to differentiate by cytokines. Such cells include the murine lines Ml and WEHI- 3BD+ and the human lines HL-60 and U937. The capacity of medium conditioned by a variety of murine and human cell lines and tissues to induce the differentiation of such cell lines expressing NR2 will be compared to the ability of the same medium to stimulate parental cell lines that do not express NR2. Medium that shows a greater ability to stimulate the differentiation of cells expressing NR2 will be considered as a potential source of NR2 ligand.
Use of secreted NR2 extracellular domain as a probe on the Biosensor; 20 Purified extracellular domain of NR2 has been obtained and is being immobilized on the surface of a Biosensor chip. Medium conditioned by a variety of murine and human cell lines and tissues will be passed across the chip and specific changes in the surface plasmon resonance will be noted. Positive medium will be considered as a potential source of NR2 ligand.
Use of secreted NR2 extracellular domain as the basis of an affinity column; Purified extracellular domain of NR2 has been obtained and is being immobilized using a variety of chemistries. Affinity columns will be constructed and medium conditioned by a variety of murine and human cell lines and tissues will be passed through. Proteins that bind to the column will be considered to be candidate NR2 ligands and will be further WO 97/12037 PCT/AU96/00607 -38characterised.
EXAMPLE 8 HUMAN LEPTIN A human leptin cDNA (16) was cloned into the peFBOS expression vector (17) in frame with the interleukin-3 leader sequence followed by the FLAGT epitope sequence CHO cells were transfected with this vector by electroporation and supernatant harvested from exponentially growing cultures. The supernatant was concentrated over a YM-10 membrane and then applied to an affinity column containing immobilised anti-FLAG
T
antibody M2. The column was eluted with FLAG' M peptide according to the manufacturer's instructions (Eastman Kodak, Rochester, NY). The monomeric form of human leptin was purified by gel filtration chromatography on a Superose 12 column (Pharmacia, Uppsala, Sweden) and exchanged into 20 mM phosphate buffered (pH7.4) saline (0.15 M) containing 0.02% v/v Tween 20 and 0.02% w/v sodium azide (PBS) by gel filtration on Sephadex M (PD-10) columns (Pharmacia). Human leptin was iodinated with 125I using a modified iodine monochloride method (19) to a specific radioactivity of approximately 107 cpm/pmole and exchanged into PBS as above.
EXAMPLE 9 20 BINDING OF 125I HUMAN LEPTIN TO CELLS EXPRESSING NR2 OR TO SOLUBLE NR2 Cos-hNR2 are COS-7 cells electroporated with peFBOX-hNR2 and harvested at 31/2 days (5xl04 cells used per point).
25 Ba/F3-hNR2 are Ba/F3 cells stably transfected with peFBOS-hNR2 (9x10 5 cells used per point).
S
Solh NR2 is a soluble form of human NR2 purified by anti-FLAG affinity chromatography from the supernatant (48 hr) of COS cells transfected with peFBOS-solh NR2 (approx. 0.1 /jg/ml final concentration in binding assay).
WO 97/12037 PCT/AU96/00607 -39- For cells, the total reaction volume was 100 pl in RPMI-medium containing 10 mM Hepes pH7.4 and 10% v/v foetal calf serum (RHF). The reaction mixture also contained '25I h leptin 0-6x10' cpm as indicated with or without unlabelled h leptin (approx. 1 /g/ml).
The mixture was incubated for 1-1.5 hr at 23 *C and then layered over 200 1 A cold foetal calf serum in small, tapered centrifuge tubes (Elkay, Melbourne) and centrifuged at 12000 g for sec. The cell pellet was removed by cutting the tubes with a scalpel blade and the cell bound (pellet) radioactivity and the unbound radioactivity (the rest of the tube) were separately counted in a Packard y-counter. Specifically bound 125I h leptin was determined as the difference in counts between otherwise identical tubes that contained or did not contain the unlabelled excess h leptin. The data were plotted as saturation curves (specifically bound versus added 1'I h leptin) and as Scatchard transformations (specific bound/free radioactivity versus specific bound radioactivity to determine the equilibrium dissociation constants [Kds] For soluble receptors (sol hNR2) incubations were as above but after 1 hr at 23 20 p of convavalin A-sepharose 4B beads suspension in 0.1 M acetate pH5) were added and incubation continued for a further 30 min. Subsequently, the beads were centrifuged and processed as above. The results are shown in Figures 5 and 6. .Human leptin binds to S 20 Ba/F3/COS cells transfected with hNR2 cDNA and to soluble hNR2.
EXAMPLE 9 EXPRESSION OF NR2 IN ANIMAL SPECIES e" Genomic DNA from various sources was digested with EcoRI. This was then blotted onto a nylon membrane (GeneScreen Plus®, NEN Research Products, USA). The filter was then probed using a 1.1 kb cDNA fragment of NR2. The fragment covers the 3' half of the first haemopoietin domain and extends to cover the whole of the second haemopoietin domain, terminating the type III fibronectin domain. The filter was prehybridised and hybridised in sodium phosphate, 7% w/v SDS and ImM EDTA at 50"C overnight. The filter was then washed in 40 mM sodium phosphate and 1% w/v SDS at 50 0 C. The results are shown WO 97/12037 PCT/AU96/00607 in Figure 7.
EXAMPLE CLONING OF THE HUMAN NR2 LOCUS In order to obtain genomic clones of the human NR2 locus, various genomic libraries were screened. These libraries were screened with either oligonucleotide or cDNA probes.
Oligonucleotide screening conditions: x10 6 clones were fixed to nylon filters (Colony/Plaque Screen
M
NEN Research Products, USA). These filters were then prehybridised in a 6xSSC buffer containing 0.2% Ficoll, 0.2% w/v bovine serum albumin, 0.2% polyvinylpyrollidine, 0.1M ATP, 50 pzg/mL transfer RNA, 2 mM tetra-sodium pyrophophate, 50 /.g/mL herring sperm DNA and 0.1% w/v sodium azide at 37"C for at least 2 hours. They were hybridised overnight under the same conditions, with at least 2xl06 cpm/mL of P-labelled oligonucleotide probe. The filters were then washed in 6x SSC/0.1% w/v SDS at 50-55"C depending on the sequence of the specific oligonucleotide (Melting Temp -10 C).
cDNA screening conditions: lx10 6 clones were fixed to nylon filters. These filters were then prehybridised in a 2xSSC buffer containing 0.2% Ficoll, 0.2% w/v bovine serum albumin, 0.2% polyvinylpyrollidine, 0.1M ATP, 50 j/g/mL transfer RNA, 2mM tetra-sodium pyrophophate, 50 /g/mL herring sperm DNA and 0.1% w/v sodium azide at 37 0 C for at least S' 20 2 hours at 65"C. They were hybridised overnight under the same conditions, with at least 2x10 6 cpm/mL of 3 P-labelled cDNA fragment: The filters were then washed in 2xSSC/0.1% w/v SDS at EXAMPLE 11 RESTRICTION ENZYME MAPPING The clones obtained were characterised by mapping with partial endonuclease digestion (21).
In order to determine on which fragments the various exons were present, specific oligonucleotide probes were used. The various clones were digested with a range of restriction enzymes. These were then blotted to a nylon membrane (GeneScreen Plus®), NEN Research WO 97/12037 PCT/AU96/00607 -41 Products, USA). Oligonucleotides derived from the cDNA sequence (and known to be specific for a particular exon), were then hybridised to the digested fragments. These hybridisations were done under the same conditions as mentioned above for oligonucleotides.
Exons could then be mapped to specific fragments by a positive hybridisation after overnight exposure.
Intron/exon boundary sequences were determined by sequencing across the intron/exon boundaries. Primers specific for sequence on either side of the boundary were used in a sequencing PCR reaction. Sequencing was performed on an ABI 373 sequencer using the Taq cycle sequencing kit (Applied Biosystems). These sequences were then compared to the consensus intron/exon boundary sequence The results are shown in Figure 8 and in Table 3.
EXAMPLE 12 DETERMINATION OF AMINO ACID SEQUENCE OF hNR2 The N-terminal amino acid sequence of hNR2 was determined. The results are shown below.
The actual sequence starts at amino acid 16. The sequence is as follows: Asp Ser Ile Ser Ser Ser Asp Tyr Lys Asp Asp Asp Glu Ser Arg 20 5 10 Tyr Pro Ile Thr Pro Trp Arg Phe Lys Leu Ser Xaa Met Pro Pro 20 25 25 Xaa Ser Thr Tyr Asp [SEQ ID NO:31] Those skilled in the art will appreciate that the invention described herein is susceptible to variations and modifications other than those specifically described. It is to be understood that 30 the invention includes all such variations and modifications. The invention also includes all of the steps, features, compositions and compounds referred to or indicated in this specification, individually or collectively, and any and all combinations of any two or more of said steps or features.
S S S S
S
S *S S S S *S S *S S S S S S S S S S S S S* S S S *5 5 Table 3. lutron-Exon junctions of the human NR2 gene Exon Exon
DONOR
sizn (bp) ss o Ig 330 SD100A 124 SDI00A SDI00B SDIOOB 145 1g 291 SD100A' 118 SDIOOA' 200 SD100B' 149 SD100B' 160 FnMl 83 PnI 161 TM 106 Cyt (Box 1) 76 Cyt' (NR2.2) 212 3'UTR 1085 Consensus
ATTOG
AAATAG
TGTTCT
CACAAG
TGATI'G
AHOGAG
CTGTGG
TGGAAG
TAAAAG
TGGAGG
CAATTC
CCAAAG
CATAAG
gtaagMa gtaagcatta ggtacca gtaggttatg gtaagaaaca gtatcatag gtatgtcaag gtttla gtctgrcagag gt~ccaat aattggtgct gtatgt gttgcttmt Iiitron size [SEQ ID NO. 161 [SEQ ID NO. 171 (SEQ ID NO. 181
ACCEPTOR
ACCEPTOR
[SEQ ID NO. 19] [SEQ ID NO. 201 [SEQ ID NO. 211 [SEQ ID NO. 22) [SEQ ID) NO. 23] [SEQ ID) NO. 241 [SEQ ID NO. 251 [SEQ ID NO. 26] [SEQ ID NO. 271 [SEQ ID NO. 281 0.16 2.3 2.4 0.2 >7 kbp ccttttccag tcctaacag ttaaattcag ttacag ctcaftacag tttcaaatag tctttag aaatttctag tatttacag catttggcag ttactacag
GTGTAT
AATA
ATGCAA
GCTGAC
ATGTCA
ATGTGA
GAGCAG
TGAAGC
ATGTAT
TTCCTA
CCCCTG
ATGATA
AATGAA
AAAATG
AGAACG
G
[SEQ ID NO. 291 [SEQ ID NO. (SEQ ID NO. 311 [SEQ ID NO. 32] [SEQ MD NO. 331 [SEQ D) NO. 34] [SEQ ID NO. 351 [SEQ ED NO. 361 [SEQ ID~ NO. 37] [SEQ ID NO. 381 [SEQ D) NO. 39] 1.4 tctttttcag 3 ccctttgtag 3 ccttttccag 3 atctaaacag tc rich-cag [SEQ ID NO. [SEQ ID NO. 411 [SEQ ID NO. 42] [SEQ ID NO. 43] AG gr/gagt WO 97/12037 WO 9712037PCT/AU96/00607 43
REFERENCES:*
1 Du, X.X and Williams, D.A. (1994) Blood 83: 2023-2030.
2. Yang, Y.C. and Yin, T. (1992) Biofactors 4. 15-21.
3. Paul, Bennett, Calvetti, Kelleher, Wood, O'Hara, Leary, Sibley, Clark, Williams, D.A. and Yang, Y.-C.
(1990) Proc. Natl. Acad. Sci. USA 87.- 7512.
4. Musashi, Clark, Sudo, Urdal, and Ogawa, M. (1991) Blood 78: 1448-1451.
Schibler, Yang, Y.C. and Christensen, R.D. (1992) Blood 80.: 900-3.
6. Tsuji, Lyman, Sudo, Clark, and Ogawa, M. (1992) Blood 79: 2855-60.
7. Burstein, Mei, Henthorn, Friese, P. and turner, K. (1992) J. Cell.
Physiol. 153: 305-12.
8. Hangoc, Yin, Cooper, Schendel, Yang, Y.C. and Broxmeyer, H.E. (1993) Blood 81: 965-72.
Teramura, Kobayashi, Hoshino, Oshimi, K. and Mizoguchi, H. (1992) Blood 79: 327-31.
:i10. Yonemura, Kawakita, Masuda, Fujimoto, Kato, K. and Takatsuki, K. (1992) Exp. Hematol. 20: 1011-6.
*11. Baumann, H. and Schendel, P. (1991) J. Biol. Chem. 266: 20424-7.
12. Kawashina, Ohsumi, Mita-Honjo, Shimoda-Takano, Ishikawa, H., Sakakibara, Miyadai, K. and Takiguchi, Y. (1991) Febs. Lett. 283: 199-202.
13. Keller, Du, X.X, Srour, Hoffman, R. and Williams, D.A. (1993) Blood 82: 1428-35.
*14. Sambrook, Fritsch, E.F. and Maniatis, T. (1989) Molecular cloning: A Laboratory Manual Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
Hilton, et al (1994) EMBO Journal 13: 4765-4777.
16. Gong et al (1996) J. Biol. Chem. 271: 3971-3974.
WO 97/12037 PCT/AU96/00607 44 17. Mizushima and Nagata (1990) Nucleic Acids Research 18: 5322.
18. Nicola et al (1996) Growth Factors 13: 141-149.
19. Hilton and Nicola (1992) J. Biol. Chem. 267: 10238-10247.
Scatchard (1949) Ann. N.Y. A cad. Sciences 51: 660-672.
21. Unit 3.3.1 (1995) Current Protocols in Molecular Biology. Editors Ausubel, Brent, Kingston, Moore, Seidman, Smith, J.A. and Struhi, K.
22. Shapiro, M.B. and Senapathy, P. *(1987) Nucleic Acids Research 15: 7155-7174.
WO 97/12037 PCT/AU96/00607 SEQUENCE LISTING GENERAL INFORMATION: APPLICANT: (Countries other than US) AMRAD OPERATIONS PTY. LTD.
(US only) Hilton et al.
(ii) TITLE OF INVENTION: A NOVEL HAEMOPOIETIN RECEPTOR AND GENETIC SEQUENCES ENCODING SAME (iii) NUMBER OF SEQUENCES: 43 (iv) CORRESPONDENCE ADDRESS: ADDRESSEE: DAVIES COLLISON CAVE STREET: 1 LITTLE COLLINS STREET CITY: MELBOURNE STATE: VICTORIA COUNTRY: AUSTRALIA ZIP: 3000 COMPUTER READABLE FORM: MEDIUM TYPE: Floppy disk COMPUTER: IBM PC compatible OPERATING SYSTEM: PC-DOS/MS-DOS SOFTWARE: Patentln Release Version #1.25 (vi) CURRENT APPLICATION DATA: APPLICATION NUMBER: PCT INTERNATIONAL FILING DATE: 26-SEP-1996 (vii) PRIOR APPLICATION DATA: .g APPLICATION NUMBER: PN5641/95 (AU) FILING DATE: 26-SEP-1995 (viii) ATTORNEY/AGENT INFORMATION: NAME: HUGHES DR, E JOHN L REFERENCE/DOCKET NUMBER: EJH/EK (ix) TELECOMMUNICATION
INFORMATION:
TELEPHONE: +61 3 9254 2777 TELEFAX: +61 3 9254 2770 WO 97/12037 PCT/AU96/00607 -46- INFORMATION FOR SEQ ID NO:1: SEQUENCE CHARACTERISTICS: LENGTH: 15 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:1: (A/G)CTCCA(A/G)TC(A/G) CTCCA INFORMATION FOR SEQ ID NO:2: SEQUENCE CHARACTERISTICS: LENGTH: 23 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear S(ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: :*'*TAATACGACT CACTATAGGG AGA 23 INFORMATION FOR SEQ ID NO:3: SEQUENCE CHARACTERISTICS: LENGTH: 19 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:3: ATTACCCTCA CTAAAGGGA WO 97/12037 PCT/AU96/00607 -47- INFORMATION FOR SEQ ID NO:4: SEQUENCE CHARACTERISTICS: LENGTH: 21 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:4: ACTAGCAGGG ATGTAGCTGA G 21 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 21 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID CTCAGCTACA TCCCTGCTAG T 21 INFORMATION FOR SEQ ID NO:6: SEQUENCE CHARACTERISTICS: LENGTH: 17 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:6: CTGCTCCTAT GATACCT 17 WO 97/12037 PCT/AU96/00607 -48- INFORMATION FOR SEQ ID NO:7: SEQUENCE CHARACTERISTICS: LENGTH: 22 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:7: CCTCTTCCAT CTTATTGCTT GG 22 INFORMATION FOR SEQ ID NO:8: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:8: ATCGGTCGTG ACATACAAGG INFORMATION FOR SEQ ID NO:9: SEQUENCE CHARACTERISTICS: LENGTH: 37 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:9: AGCTAAGCTT TCTAGATATC CAATTACTCC TTGGAGA 37 WO 97/12037 PCT/AU96/00607 49 INFORMATION FOR SEQ ID NO:lO: SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:lO: AGCTTCTAGA TCAATCACTC TGGTGTTTTT CAAT 34 INFORMATION FOR SEQ ID 140:11: SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear MOLECULE TYPE: DNA sees (xi) SEQUENCE DESCRIPTION: SEQ ID NO:11: *AGCTTCTAGA TCAAACTTTT ATATCCATGA CAAC 34 0*0 0 WO 97/12037 PCT/AU96/00607 INFORMATION FOR SEQ ID NO:12: SEQUENCE CHARACTERISTICS: LENGTH: 3909 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:12: CGAATTCGCG GGCGCGTCGA CCGCGGNCCC AGCTCGGGAG ACATGGGGGG CGTTAAAGCT CTCGTGGNAT TATCCTTCAG TGGGGSTATT GGACTGACTT TTCTTATGCT GGGATGTGCC TTAGAGGATT ATGGATTTGG CAGTTCACCC TGACCATCTT GAAAATAAGT TATCTCTGAT CTCTGTCTGT ATGTTACTTC TCTCCCCTCA CCAACGGAGA ACAAATGTGG GCAAAGTGTA CTTCTCTGAA GTAAG -195 -135 ATG ATT TGT CAA AAA TTC TGT GTG GTT TTG TTA CAT TGG GAA Met Ile Cys Gin Lys Phe Cys Val Val Leu Leu His Trp Glu TTT ATT Phe Ile TAT GTG ATA Tyr Val Ile TTT AAG TTG Phe Lys Leu GCG TTT AAC TTG TCA TAT CCA ATT ACT Ala Phe Asn Leu Ser Tyr Pro Ile Thr CCT TGG AGA Pro Trp Arg TCT TGC ATG CCA Ser Cys Met Pro AAT TCA ACC TAT GAC TAC TTC CTT Asn Ser Thr Tyr Asp Tyr Phe Leu TTG CCT Leu Pro GCT GGA CTC TCA Ala Gly Leu Ser
AAG
Lys AAT ACT TCA AAT Asn Thr Ser Asn AAT GGA CAT TAT Asn Gly His Tyr 192 240
GAG
Glu ACA GCT GTT GAA Thr Ala Val Glu AAG TTT AAT TCA Lys Phe Asn Ser GGT ACT CAC TTT TCT Gly Thr His Phe Ser AAC TTA TCC AAA ACA ACT TTC CAC TGT Asn Leu Ser Lys Thr Thr Phe His Cys TTT CGG AGT GAG Phe Arg Ser Glu CAA GAT Gin Asp a a a a a a a 288 336 AGA AAC TGC TCC TTA TGT GCA GAC AAC ATT GAA GGA AGG Arg Asn Cys Ser Leu Cys Ala Asp Asn Ile Giu Gly Arg ACA TTT GTT Thr Phe Val 110 AAC TGG AAC Asn Trp Asn TCA ACA GTA Ser Thr Val 115 AAT TCT TTA GTT TTT CAA CAA ATA GAT Asn Ser Leu Val Phe Gin Gin Ile Asp WO 97/12037 PCT/AU96/00607 -51 ATA CAG TGC TGG Ile Gin Cys Trp 130 CTA AAA GGA GAC TTA AAA TTA TTC ATC Leu Lys Gly Asp Leu Lys Leu 135 TGT TAT GTG Cys Tyr Val Phe Ile 140
GAG
Glu 145 TCA TTA TTT Ser Leu Phe AAG AAT Lys Asn 150 CTA TTC AGG AAT TAT AAC TAT AAG' GTC CAT Leu Phe Arg Asn Tyr Asn Tyr Lys Val His 155 160 CTT TTA TAT GTT Leu Leu Tyr Val CCT GAA GTG TTA Pro Giu Val Leu
GAA
Glu 170 GAT TCA CCT CTG Asp Ser Pro Leu GTT CCC Val Pro 175 CAA AAA GGC Gin Lys Gly TGT TGT GAA Cys Cys Glu 195 TTT CAG ATG GTT Phe Gin Met Val TGC AAT TGC AGT Cys Asn Cys Ser GTT CAT GAA Val His Glu 190 AAC GAC ACT Asn Asp Thr TGT CTT GTG CCT Cys Leu Vai Pro CCA ACA GCC AAA Pro Thr Ala Lys
CTC
Leu 205 CTC CTT Leu Leu 210 ATG TGT TTG AAA Met Cys Leu Lys ACA TCT GGT GGA Thr Ser Gly Gly
GTA
Va1 220 ATT TTC CRG TCA Ile Phe Xaa Ser CTA ATG TCA GTT Leu Met Ser Val CCC ATA AAT ATG Pro Ile Asn Met
GTG
Val 235 AAG CCT GAT CCA Lys Pro Asp Pro TTA GGT TTG CAT Leu Gly Leu His GAA ATC ACA GAT Glu Ile Thr Asp
GAT
Asp 250 GGT AAT TTA AAG Gly Asn Leu Lys ATT TCT Ile Ser 255 TGG TCC AGC Trp Ser Ser TAT TCA GAG Tyr Ser Glu 275 CCA TTG GTA CCA Pro Leu Val Pro CCA CTT CAA TAT Pro Leu Gin Tyr CAA GTG AAA Gin Val Lys 270 AAG ATT GTC Lys Ile Val AAT TCT ACA ACA Asn Ser Thr Thr
GTT
Val 280 ATC AGA GAA GCT Ile Arg Giu Ala
GAC
Asp 285 TCA GCT ACA TCC CTG CTA Ser Ala Thr Ser Leu Leu 290 GTA GAC AGT ATA Val Asp Ser Ile 295 AAG AGA CTG GAT Lys Arg Leu Asp CTT CCT Leu Pro 300 GGG TCT TCG TAT Gly Ser Ser Tyr GTT CAG GTG AGG Val Gin Val Arg
GGC
Gly 310
GGC
Gly 315 CCA GGA ATC TGG Pro Gly Ile Trp
AGT
Ser 320 912 960 1008 GAC TGG AGT ACT CCT CGT GTC TTT ACC Asp Trp Ser Thr Pro Arg Val Phe Thr 325
ACA
Thr 330 CAA GAT GTC ATA Gin Asp Val Ile TAC TTT Tyr Phe 335 CCA CCT AAA Pro Pro Lys
ATT
Ile 340 CTG ACA AGT GTT Leu Thr Ser Val
GGG
Gly 345 TCT AAT GTT TCT TTT CAC TGC Ser Asn Val Ser Phe His Cys 1056 WO 97/12037 WO 9712037PCT/AU96/00607 52 ATC TAT AAG AAG GAA AAC AAG ATT Ile Tyr Lys 355 Lys Giu Asn Lys GTT CCC TCA AAA Val Pro Ser Lys ATT GTT TGG Ile Val Trp 1104 TGG ATG Trp, Met 370 AAT TTA GCT GAG Asn Leu Ala Giu
AAA
Lys 375 ATT CCT CAA AGC Ile Pro Gin Ser
CAG
Gin 380 TAT GAT GTT GTG Tyr Asp Vai Val GAT CAT GTT AGC Asp His Val Ser
AAA
Lys 390 GTT ACT TTT TTC Val Thr Phe Phe
AAT
Asn 395 CTG AAT GAA ACC Leu Asn Giu Thr
AAA
Lys 400 1152 1200 1248 CCT CGA GGA AAG Pro Arg Gly Lys ACC TAT GAT Thr Tyr Asp *GCA GTG Ala Val 410 TAC TGC TGC AAT Tyr Cys Cys Asn GAA CAT Giu His 415 GAA TGC CAT Giu Cys His AAT ATC TCA Asn Ile Ser 435 CGC TAT GCT GAA Arg Tyr Ala Giu TAT GTG ATT GAT Tyr Val Ile Asp GTC AAT ATC Vai Asn Ile 430 ACT TGC AGA Thr Cys Arg 1296 1344 TGT GAA ACT GAT Cys Giu Thr Asp
GGG
Giy 440 TAC TTA ACT AAA Tyr Leu Thr Lys TGG TCA Trp Ser 450 ACC*AGT ACA ATC CAG TCA CTT GCG GAA Thr Ser Thr Ile Gin Ser Leu Ala Giu 455
AGC
Ser 460 ACT TTG CAA TTG Thr Leu Gin Leu 1392 a a a. a.
AGG TAT CAT AGG AGC Arg Tyr His Arg Ser
AGC
Ser 470 CTT TAC TGT TCT Leu Tyr Cys Ser ATT CCA TCT ATT Ile Pro Ser Ile
CAT
His 480 CCC ATA TCT GAG Pro Ile Ser Glu
CCC
Pro 485 AAA GAT TGC TAT Lys Asp Cys Tyr
TTG
Leu 490 CAG AGT GAT GGT GIn Ser Asp Gly TTT TAT Phe Tyr 495' 144 0 1488 1536 GAA TGC PiTT Giu Cys !le ATT AGG ATC Ile Arg Ile 515
TTC
Phe 500 CAG CCA ATC TTC CTA TTA TCT GGC TAC Gin Pro Ile Phe Leu Leu Ser Giy Tyr 505 ACA ATG.TGG Thr Met Trp, 510 CCA ACA TOT Pro Thr Cys AAT CAC TCT CTA Asn His Ser Leu TCA CTT GAC TCT Ser Leu Asp Ser 1584 a
GTC*CTT
Val Leu 530 CCT OAT TCT.GTG Pro Asp Ser Val AAG-CCA CTG CCT CCA TCC AGT GTG AAA Lys Pro Leu Pro Pro Ser Ser Val Lys 1632 1680
GCA
Al a 545 GAA ATT ACT ATA Giu Ile Thr Ile ATT GGA TTA TTG Ile Gly Leu Leu ATA TCT TGG GAA Ile Ser Trp Giu CCA GTC TTT CCA GAG AAT AAC CTT CAA Pro Vai Phe Pro Giu Asn Asn Leu Gin CAG ATT CGC TAT Gin Ile Arg Tyr GOT TTA Gly Leu 575 1728 WO 97/12037 PCT/AU96/00607 -53 AGT GGA AAA Ser Gly Lys CCA AAA TCT Pro Lys Ser 595 GTT CAG Val Gin 610
GTG
Val AGC AAT Ser Asn GAA GTA CAA TGG AAG ATG TAT GAG GTT TAT GAT CCA AAA Glu Val Gin Trp Lys Met Tyr Glu Val Tyr Asp Pro Lys 580 585 590 GTC AGT CTC CCA GTT CCA GAC TTG TGT GCA GTC TAT GCT Val Ser Leu Pro Val Pro Asp Leu Cys Ala Val Tyr Ala 600 605 CGC TTT AAG AGG CTA GAT GGA CTG GGA TAT TGG AGT AAT Arg Phe Lys Arg Leu Asp Gly Leu Gly Tyr Trp Ser Asn 615 620 CCA GCC TAC ACA GTT GTC ATG GAT ATA AAA GTT CCT ATG Pro Ala Tyr Thr Val Val Met Asp Ile Lys Val Pro Met 630 635 640 GAA TTT TGG AGA ATA ATT AAT GGA GAT ACT ATG AAA AAG Glu Phe Trp Arg Ile Ile Asn Gly Asp Thr Met Lys Lys 645 650 655 GTC ACT TTA CTT TGG AAG CCC CTG ATG AAA AAT GAC TCA Val Thr Leu Leu Trp Lys Pro Leu Met Lys Asn Asp Ser 660 665 670 GTT CAG AGA TAT GTG ATA AAC CAT CAT ACT TCC TSC AAT Val Gin Arg Tyr Val Ile Asn His His Thr Ser Xaa Asn 680 685 1824 1872 1920 1968 2016 2064 1776 AGA GGA CCT Arg Gly Pro GAG AAA AAT Glu Lys Asn TTG TGC AGT Leu Cys Ser 675 GGA ACA Gly Thr 690 TGG TCA GAA GAT Trp Ser Glu Asp
GTG
Val 695 GGA AAT CAC Gly Asn His ACG AAA Thr Lys .700 TTC ACT TTC CTG Phe Thr Phe Leu ACA GAG CAA GCA Thr Glu Gin Ala ACT GTT ACG GTT Thr Val Thr Val GCC ATC AAT TCA Ala Ile Asn Ser 2112 2160 2208 GGT GCT TCT GTT Gly Ala Ser Val
GCA
Ala 725 AAT TTT AAT TTA Asn Phe Asn Leu TTT TCA TGG CCT Phe Ser Trp Pro ATG AGC Met Ser 735 AAA GTA AAT Lys Val Asn TGT GTG ATT Cys Val Ile 755
ATC
Ile 740 GTG CAG TCA CTC Val Gln Ser Leu GCT TAT CCT TTA Ala Tyr Pro Leu AAC AGC AGT Asn Ser Ser 750 AAG CTA ATG Lys Leu Met GTT TCC TGG ATA Val Ser Trp Ile TCA CCC AGT GAT Ser Pro Ser Asp 2256 2304 2352 r TAT TTT Tyr Phe 770 TGG CTT Trp Leu 785 ATT ATT GAG TGG Ile Ile Glu Trp AAT CTT AAT GAA Asn Leu Asn Glu
GAT
Asp 780 GGT GAA ATA AAA Gly Glu Ile Lys AGA ATC TCT Arg Ile Ser TCA TCT GTT AAG AAG Ser Ser Val Lys Lys 790
TAT
Tyr 795 TAT ATC CAT GAT Tyr Ile His Asp 2400 WO 97/12037 WO 9712037PCT/AU96/00607 54 TTT ATC CCC ATT GAG AAG TAC CAG TTC AGT CTT TAC CCA ATA TTT ATG Phe Ile Pro Ile Giu Lys Tyr Gin Phe Ser Leu Tyr Pro Ile Phe Met GAA GGA GTG Giu Gly Vai ATT GAA AAA Ile Giu Lys 835 ATT ATT TCC Ile Ile Ser
GGA
Giy 820
CAC
His CCA AAG ATA Pro Lys Ile
ATT
Ile 825
GGT
Giy AAT AGT TTC ACT Asn Ser Phe Thr 815 CAA GAT GAT Gin Asp Asp 830 GTG CCA GTA Vai Pro Vai ATA TCA CAC Ile Ser His CAG AGT GAT Gin Ser Asp
GCA
Aila 840
TTG
Leu TTA TAT GTA Leu Tyr Vai
ATT
Ile 845
TTA
Leu 2448 2496 2544 2592 2640 2689 TCT TCC ATC Ser Ser Ile CTT GGA ACA Leu Giy Thr 850 CAA AGA Gin Arg
TTA
Leu 860
CCG
Pro ATG AAA AAG Met Lys Lys
CTA
Leu 870 TTT TGG GAA GAT GTT Phe Trp Giu Asp Vai 875 CTT AAT TTT CAG AAG Leu Asn Phe Gin Lys 890 AAC CCC AAG Asn Pro Lys
AAT
Asn 880 CTT T Leu TGT TCC TGG GCA CAA GGA Cys Ser Trp Aia Gin Giy 885 AGA ACG GAC ATT Arg Thr Asp Ile 0
GAAGTCTAAT
AGTATTAGAA
ACTTCTGAGA
TAA.ACCCAAG
GATTTCAAAT
TTTTGTAATT
TACATCATCT
AATTTTTATG
AGGTTTGAAA
CCCACAAGAA
AGTCAAAAGT
CGGGCTTCAA
TGGGATGTAT
GCGAAAGAAC
GACCGTCCGT
CATGATCACT
GATTTTTACA
GTTAACATAT
TTTTACATCT
TTTCATCATA
CTTTTAATAC
GTTAGGACAT
TTACTAATAT
AGGTAAAATC
AACTTATAGA
TATAGGAACT
CACAAACACG
GGGTCCAGTC
AAATTAATAC
CCCTTTACCC
ACAGATGAAC
TTTTGAAGAA
GGTGGATTAT
AAACTCAGGT
AGTACTAAAG
CGACAACGAC
TAATCCACTT
TCATACCTTA
TAAGGAAATA
GGACCGTAAA
TTTACCGAAT-
ACGGGTGTCC
TAACTGCCCT
TGGATTTAGA
GTCACTASGT
C CAATGTGC C
GGGGAGCAAA
GTTGATTTAG
CAAACCTACA
ACCGAAAACT
AGTAATGTAT
GAGATTTTGA
GTCACTTTTA
TCTGTGCAGT
AACATAGATT
TCACTATTGA
TGTCACCCTC
GGTCTTCCCT
TTAAATGAAG
TTTTTCCCTC
AACTTCCCAA
TCTAAAAAAA
AACTTAAAAT
CACTAATTAA
AAACAGTATA
AGATAATTTA
CGTTGTAGAC
TAAATCAAAC
CGGATTTTTA
GAAACAAGTT
AGGCAAAGTC
AATGTCAAGT
TGTAGCTGAA
GTGACTTGGT
TGAGAAACCT
CAGTCTATAG
ATTCAGTTGA
AGATGTCATT
AAGTTTAGTA
AGGACCAGTA
CAG~TAGTTTA
TGTTTATCGA
ATAAAAATAC
GTCGGATAAG
AGACCCTTAA
AATTTTCCTT
ATAGTCCTAC
GATTACAGGT
AGGTTCTGGA
CGAAAATACT
2749 2809 2869 2929 2989 3049 3109 3169 3229 3289 3349 3409 3469 3529 3589 .0 :O*o.
I.:
WO 97/12037 PCT/AU96/00607 TATCAAGTAC CACTCCTGTC TTGAAAAGAT GAAAGTCTGT CTGACGAACG ATCAAAATAC 3649 TTAAG 3654 INFORMATION FOR SEQ ID NO:13: SEQUENCE CHARACTERISTICS: LENGTH: 896 amino acids TYPE: amino acid TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:13: Met Ile Cys Gin Lys Phe Cys Val Val Leu Leu His Trp Glu Phe Ile 1 5 10 Tyr Val Ile Thr Ala Phe Asn Leu Ser Tyr Pro Ile Thr Pro Trp Arg 25 Phe Lys Leu Ser Cys Met Pro Pro Asn Ser Thr Tyr Asp Tyr Phe Leu 40 Leu Pro Ala Gly Leu Ser Lys Asn Thr Ser Asn Ser Asn Gly His Tyr 50 55 Glu Thr Ala Val Glu Pro Lys Phe Asn Ser Ser Gly Thr His Phe Ser 65 70 75 Asn Leu Ser Lys Thr Thr Phe His Cys Cys Phe Arg Ser Glu Gin Asp 85 90 Arg Asn Cys Ser Leu Cys Ala Asp Asn Ile Glu Gly Arg Thr Phe Val 100 105 110 Ser Thr Val Asn Ser Leu Val Phe Gin Gin Ile Asp Ala Asn Trp Asn 115 120 125 Ile Gin Cys Trp Leu Lys Gly Asp Leu Lys Leu Phe lie Cys Tyr Val 130 135 140 Glu Ser Leu Phe Lys Asn Leu Phe Arg Asn Tyr Asn Tyr Lys Val His 145 150 155 160 "Leu Leu Tyr Val Leu Pro Glu Val Leu Glu Asp Ser Pro Leu Val Pro 165 170 175 Gin Lys Gly Ser Phe Gin Met Val His Cys Asn Cys Ser Val His Glu 180 185 190 Cys Cys Glu Cys Leu Val Pro Val Pro Thr Ala Lys Leu Asn Asp Thr 195 200 205 WO 97/12037 WO 9712037PCT/AU96/00607 56 Leu Leu Met Cys Leu Lys Ile Thr Ser Gly Gly Val Ile Phe Xaa Ser 210 220 9*
S.
Pro 225 Leu Trp Tyr Ser Giu 305 Asp Pro Ile Trp Ser 385 Pro Giu Asn Trp Arg 465 Pro Leu Gly Ser Ser Al a 290 Val Trp Pro Tyr Met 370 Asp Arg Cys Ile Ser 450 Tyr Ile Met Leu Ser Glu 275 Thr Gin Ser Lys Lys 355 Asn His Gly His Ser 435 TV, r His Ser Ser Vai His Met 245 Pro Pro 260 Asn Ser Ser Leu Vai Arg Thr Pro 325 Ile Leu 340 Lys Giu Leu Aia Val Ser Lys Phe 405 His Arg 420 Cys Giu Ser Thr Arg Ser Giu Pro 485 Gin 230 Giu Leu Thr Leu Giy 310 Arg Thr Asn Glu Lys 390 Thr Tyr Thr Ile Ser 470 Lys Pro Ile Vali Thr Val 295 Lys Val Ser Lys Lys 375 Val Tyr Ala Asp Gin 455 Leu Asp Ile Thr Pro Val1 280 Asp Arg Phe Val Ile 360 Ile Thr Asp Giu Gly 440 Ser Tyr Cys Asn Asp Phe 265 Ile Ser Leu Thr Gly 345 Val Pro Phe Al a Leu 425 Tyr Leu Cys Tyr Met Asp 250 Pro Arg Ile Asp Thr 330 Ser Pro Gin Phe Val 410 Tyr Leu Al a Ser Leu 490 Val Lys 235 Gly Asn Leu Gin Giu Ala Leu Pro 300 Gly Pro 315 Gin Asp Asn Val Ser Lys Ser Gin 380 Asn Leu 395 Tyr.Cys.
Val Ilie Thr Lys Giu Ser 460 Asp Ile 475 Gin Ser Pro Leu Tyr Asp 285 Gly Gly Val Ser Glu 365 Tyr Asn Cys Asp Met 445 Thr Pro Asp Asp Lys Gin 270 Lys Ser Ile Ile Phe 350 Ile Asp Giu Asn Vai 430 Thr Leu Ser Gly Pro Ile 255 Val Ile Ser Trp Tyr 335 His Val1 Val1 Thr Giu 415 Asn Cys Gin Ile Phe 495 Pro 240 Ser Lys Val Tyr Ser 320 Phe Cys Trp Val Lys 400 His Ile Arg Leu His 480 Tyr WO 97/12037 WO 9712037PCT/AU96/00607 57 Giu Ile Vai Al a 545 Pro Ser Pro Vai Trp 625 Arg Giu Leu Gly Trp 705 Gly Lys Cys Cys Arg Leu 530 Giu Val Gly Lys Gin 610 Ser Gly Lys Cys Thr 690 Thr Al a Val Val Ile Ile 515 Pro Ile Phe Lys Ser 595 Val Asn Pro Asn Ser 675 Trp Giu Ser Asn Ile 755 Phe 500 Asn Asp Thr Pro Giu 580 Val Arg Pro Giu Vai 660 Val1 Ser Gin Vai Ile 740 Val Gin His Ser Ile Giu 565 Vai Ser Phe Al a Phe 645 Thr Gin Giu Al a Al a 725 Vai Ser Pro Ser Val1 Asn 550 Asn Gin Leu Lys Tyr 630 Trp Leu Arg Asp His1 710 Asn Gin Trp Ile Leu Vai 535 Ile Asn Trp Pro Arg 615 Thr Arg Leu Tyr Val 695 Thr Phe Ser Ile Phe Giy 520 Lys Gly Leu Lys Val 600 Leu Val, Ile Trp Vai 680 Giy Vai Asn Leu Leu 760 Leu 505 Ser Pro Leu Gin Met 585 Pro Asp Val Ile Lys 665 Ile Asn Thr Leu Ser 745 Ser Leu Leu Leu Leu Phe 570 Tyr Asp Gly Met Asn 650 Pro Asn His Val1 Thr 730 Al a Pro Ser Gly Tyr Thr Met Trp 510 Asp Pro Lys 555 Gin Giu Leu Leu Asp 635 Gly Leu His Thr Leu 715 Phe Tyr Ser Ser Pro 540 Ile Ile Val1 Cys Gly 620 Ile Asp Met His Lys 700 Al a Ser Pro Asp Pro 525 Ser Ser Arg Tyr Al a 605 Tyr Lys Thr Lys Thr 685 Phe Ile Trp Leu Tyr 765 Thr Val1 Giu Giy 575 Pro Tyr Ser Pro Lys 655 Asp Xaa Phe Ser Met 735 Ser Leu 9* Tyr Phe Ile Ile Giu Trp Lys Asn Leu Asn Giu Asp Gly Giu Ile Lys 770 775 780 WO 97/12037 WO 9712037PCT/AU96/00607 58 Trp 78S Phe Giu Ile Ile Gin 865 Cys Leu Arg Ile Pro Giy Val Giu Lys 835 Ile Ser 850 Arg Met Ser Trp, Ile Ile Gly 820 His Ser Lys Aila Ser Giu 805 Lys Gin Ser Lys Gin 885 Ser 790 Lys Pro Ser Ile Leu 870 Gly Ser Tyr Lys Asp Leu 855 Phe Leu Vai Gin Ile Aia 840 Leu Trp Asn Lye Lye Phe Ser 810 Ile Asn 825 Giy Leu Leu Gly Giu Asp Phe Gin 890 Tyr 795 Leu Ser Tyr Thr Val1 875 Lye Tyr Ile Tyr Pro Phe Thr Vai Ile 845 Leu Leu 860 Pro Aen Arg Thr His Ile Gin 830 Val Ile Pro Asp Asp His 800 Phe Met 815 Asp Asp Pro Vai Ser His Lye Aen 880 Ile Leu 895 9* .9 9**9 9 *99* 9**9 9.
9 .9 @9 9.
INFORMATION FOR SEQ ID NO:14: Ci) SEQUENCE CHARACTERISTICS: LENGTH: 30 amino acids TYPE: amino acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:i4: Met Val Leu Ala Ser Ser Thr Thr Ser Ilie His Thr Met Leu Leu Leu 1 510 Leu Leu Met Leu Phe His Leu Gly Leu Gin Ala Ser Ile Ser 20 25 WO 97/12037 PCT/AU96/00607 -59- INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 8 amino acids TYPE: amino acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID Asp Tyr Lys Asp Asp Asp Asp Lys 1 INFORMATION FOR SEQ ID NO:16: SEQUENCE CHARACTERISTICS: LENGTH: 6 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:16: ATTGGGGTAA GTTATT 16 INFORMATION FOR SEQ ID NO:17: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:17: *g AAATAGGTAA GCATTA 16 INFORMATION FOR SEQ ID NO:18: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA WO 97/12037 PCT/AU96/00607 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:18: TGTTCTGTAA GTACCA 16 INFORMATION FOR SEQ ID NO:19: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:19: CACAAGGTAG GTTATG 16 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID S TGATTGGTAA GAAACA 16
C
INFORMATION FOR SEQ ID NO:21: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) qEQUENCE DESCRIPTION: SEQ ID NO:21: S* ATTGAGGTAT CATAGG 16 INFORMATION FOR SEQ ID NO:22: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid WO 97/12037 PCT/AU96/00607 -61- STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:22: CTGTGGGTAT GTCAAG 16 INFORMATION FOR SEQ ID NO:23: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: TGGAAGGTAC CTTTTA 16 INFORMATION FOR SEQ ID NO:24: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA xi) SEQUENCE DESCRIPTION: SEQ ID NO:24: TAAAAGGTCT GCAGAG 16 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 17 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID TGGAGGGTAT NCCCAAT WO 97/12037 PCT/AU96/00607 -62- INFORMATION FOR SEQ ID NO:26: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:26: CAATTCAATT GGTGCT 16 INFORMATION FOR SEQ ID NO:27: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:27: CCAAAGGTAT TGTACT 16 INFORMATION FOR SEQ ID NO:28: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:28: CATAAGGTTG CTTTTT 16 INFORMATION FOR SEQ ID NO:29: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA WO 97/12037 PCT/AU96/00607 -63- (xi) SEQUENCE DESCRIPTION: SEQ ID NO:29: CCTTTTCCAG GTGTAT 16 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 15 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID TCCTAACAGA ATTTA INFORMATION FOR SEQ ID NO:31: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:31: TTAAATTCAG ATGCAA 16 INFORMATION FOR SEQ ID NO:32: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:32: TATTTAACAG GCTGAC 32 INFORMATION FOR SEQ ID NO:33: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid WO 97/12037 PCT/AU96/00607 -64- STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:33: CTCATTACAG ATGTCA 16 INFORMATION FOR SEQ ID NO:34: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:34: TTTCAAATAG ATGTGA 16 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID TCTTTTAAAG GAGCAG 16 INFORMATION FOR SEQ ID NO:36: SEQUENCE CHARACTERISTICS: LENGTH: base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:36: AAATTTCTAG TGAAGC WO 97/12037 PCT/AU96/00607 INFORMATION FOR SEQ ID NO:37: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:37: TATTTTACAG ATGTAT 16 INFORMATION FOR SEQ ID NO:38: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA SEQUENCE DESCRIPTION: SEQ ID NO:38: CATTTGGCAG TTCCTA 16 oo:e INFORMATION FOR SEQ ID NO:39: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA o. (xi) SEQUENCE DESCRIPTION: SEQ ID NO:39: TTTACTACAG CCCCTG 16 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA WO 97/12037 PCT/AU96/00607 -66- (xi) SEQUENCE DESCRIPTION: SEQ ID TCTTTTTCAG ATGATA 16 INFORMATION FOR SEQ ID NO:41: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:41: CCCTTTGTAG AATGAA 16 INFORMATION FOR SEQ ID NO:42: SEQUENCE CHARACTERISTICS: LENGTH: 42 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:42: CCTTTTCCAG AAAATG 16 INFORMATION FOR SEQ ID NO:43: SEQUENCE CHARACTERISTICS: LENGTH: 16 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO:43: ATCTAAACAG AGAACG 16 INFORMATION FOR SEQ ID NO:44: SEQUENCE CHARACTERISTICS: LENGTH: 35 amino acids TYPE: amino acid STRANDEDNESS: single WO 97/12037 PCT/AU96/00607 67 TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:44: Asp Ser Ile Ser Ser Ser Asp Tyr Lys Asp Asp Asp Glu Ser Arg Tyr 10 Pro Ile Thr Pro Trp Arg Phe Lys Leu Ser Xaa Met Pro Pro Xaa Ser 25 Thr Tyr Asp

Claims (20)

1. An isolated nucleic acid molecule comprising a sequence of nucleotides encoding or complementary to a sequence encoding a haemopoietin receptor or a derivative thereof wherein said sequence of nucleotides or a complementary form thereof is capable of hybridising under medium stringent conditions to the oligonucleotide: 5'-(A/G)CTCCA(A/G)TC(A/G)CTCCA-3' [SEQ ID NO:1].
2. An isolated nucleic acid molecule according to claim 1 wherein said nucleic acid molecule comprises a nucleotide sequence or a complementary form thereof which hybridises under medium stringent conditions to the oligonucleotides: 5'-ACTAGCAGGGATGTAGCTGAG-3' [SEQ ID NO:4] 5'-CTGCTCCTATGATACCT-3' [SEQ ID NO:6] 5'-CCTCTTCCATCTTATTGCTTGG-3' [SEQ ID NO:7] 5'-ATCGGTCGTGACATACAAGG-3' [SEQ ID NO:8].
3. An isolated nucleic acid molecule according to claim 2 wherein said nucleic acid molecule comprises a nucleotide sequence or a complementary form thereof which hybridises under medium stringent conditions to one or more of the following oligonucleotides: 5'-CTCAGCTACATCCCTGCTAGT-3' [SEQ ID 5'-AGCTAAGCTTTCTAGATATCCAATTACTCCTTGGAGA-3' [SEQ ID NO:9] 5'-AGCTTCTAGATCAATCACTCTGGTGTTTTTCAAT-3' [SEQ ID 5'-AGCTTCTAGATCAAACTTTTATATCCATGACAAC-3' [SEQ ID NO:11].
4. An isolated nucleic acid molecule according to claim 3 wherein the haemopoietin receptor is capable of interaction with leptin. An isolated nucleic acid molecule according to claim 4 comprising a nucleotide sequence as set forth in SEQ ID NO: 12 or is capable of hybridising to all or part thereof under low stringent conditions. WO 97/12037 PCT/AU96/00607 -69-
6. A recombinant haemopoietin receptor or a derivative thereof encoded by a nucleic acid molecule which comprises a nucleotide sequence or a complementary form thereof which is capable of hybridising to SEQ ID NO: 1 under medium stringent conditions.
7. A recombinant haemopoietin receptor or its derivative according to claim 6 wherein said haemopoietin receptor is encoded by a nucleic acid molecule which comprises a nucleotide sequence or a complementary form thereof which is capable of hybridising to SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:7 and SEQ ID NO:8 under medium stringent conditions.
8. A recombinant haemopoietin receptor or its derivative according to claim 7 wherein said haempoietic receptor is encoded by a nucleic acid molecule which comprises a nucleotide sequence or complementary form thereof which hybridises under medium stringency conditions to one or more of SEQ ID NO:1 and SEQ ID NO:4 to SEQ ID NO:11. A recombinant haempoietin receptor or its derivative according to claim 8 wherein the haemopoietin receptor is capable of interaction with leptin.
10. A recombinant haemopoietin receptor or its derivative according to claim 9 encoded by a nucleic acid molecule comprising a nucleotide sequence or complementary form thereof substantially as set forth in SEQ ID NO: 12 or a sequence capable of hybridising to all or part thereof under medium stringent conditions.
11. A recombinant haemopoietin receptor or its derivative according to claim 10 wherein said haempoietin receptor has an amino acid sequence substantially as set forth in Figure 2 [SEQ ID NO:13] or having at least about 60% similarity to all or part thereof.
12. A nucleic acid molecule according to claim 1 or claim 6 wherein said haemopoietin receptor is of mammalian origin. WO 97/12037 PCT/AU96/00607
13. A nucleic acid molecule according to claim 12 wherein the haempoietin receptor is derived from a human, livestock animal, laboratory test animal, companion animal or captive wild animal.
14. A nucleic acid molecule according to claim 13 wherein the haempoietin receptor is derived from a human or murine species. An antibody to the recombinant haempoietin receptor according to any one of claims 6 to 11.
16. An antibody according to claim 15 wherein the antibody is a monoclonal antibody.
17. A ligand capable of binding to a haempoietic receptor according to any one of claims 6 to 11.
18. A ligand according to claim 17 wherein the ligand is leptin. o
19. A method of identifying a ligand capable of interacting with a haempoietic receptor as defined in any one of claims 6 to 11, said method comprising, contacting a biological sample containing a putative ligand with said haempoietic receptor or a ligand binding portion thereof immobilised to a solid support for a time and under conditions sufficient for a complex to form between said receptor and said ligand if said ligand is present in said biological sample, eluting bound ligand and isolating same.
20. A pharmaceutical composition comprising a recombinant haemopoietin receptor according to any one of claims 6 to 11 or a ligand binding portion thereof and one or more pharmaceutically acceptable carriers and/or diluents. WO 97/12037 PCT/AU96/00607 -71
21. A pharmaceutical composition comprising a ligand to the recombinant haemopoietin receptor according to any one of claims 6 to 11 and one or more pharmaceutically acceptable carriers and/or diluents.
22. A method of treatment in a mammal comprising administering to said mammal a treatment effective amount of a recombinant haemopoietin receptor according to any one of claims 6 to 11 or a ligand binding portion thereof or a ligand to said haempoietic receptor for a time and under conditions sufficient for said treatment to be substantially effected or substantially ameliorated.
23. An isolated nucleic acid molecule according to Claim 1 to or a recombinant haemopoietin receptor according to Claims 6 to 11 or a nucleic acid molecule according to Claims 12 to 14 or an antibody according to Claim 15 or 16 or a ligand according to Claim 17 or 18 or a method according to Claim 19 or a pharmaceutical composition according to Claim 20 or 21 or a method according to Claim 22 substantially as hereinbefore described with reference to the Examples and Figures. DATED this twenty-seventh day of April 2000. AMRAD Operations Pty Ltd by DAVIES COLLISON CAVE Patent Attorneys for the Applicant a. a a a a
AU30169/00A 1995-09-26 2000-04-28 A novel haemopoietin receptor and genetic sequences encoding same Ceased AU767972B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU30169/00A AU767972B2 (en) 1995-09-26 2000-04-28 A novel haemopoietin receptor and genetic sequences encoding same

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
AUPN5641 1995-09-26
AU69805/96A AU6980596A (en) 1995-09-26 1996-09-26 A novel haemopoietin receptor and genetic sequences encoding same
AU30169/00A AU767972B2 (en) 1995-09-26 2000-04-28 A novel haemopoietin receptor and genetic sequences encoding same

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
AU69805/96A Division AU6980596A (en) 1995-09-26 1996-09-26 A novel haemopoietin receptor and genetic sequences encoding same

Publications (2)

Publication Number Publication Date
AU3016900A true AU3016900A (en) 2001-01-11
AU767972B2 AU767972B2 (en) 2003-11-27

Family

ID=29741463

Family Applications (1)

Application Number Title Priority Date Filing Date
AU30169/00A Ceased AU767972B2 (en) 1995-09-26 2000-04-28 A novel haemopoietin receptor and genetic sequences encoding same

Country Status (1)

Country Link
AU (1) AU767972B2 (en)

Also Published As

Publication number Publication date
AU767972B2 (en) 2003-11-27

Similar Documents

Publication Publication Date Title
CA2238080C (en) A novel haemopoietin receptor and genetic sequences encoding same
US6870031B2 (en) Haemopoietin receptor and genetic sequences encoding same
US6479274B1 (en) DNA molecules encoding human HELA2 or testisin serine proteinases
US20080009444A1 (en) Biologically active complex of NR6 and cardiotrophin-like-cytokine
CA2270171A1 (en) Therapeutic and diagnostic agents capable of modulating cellular responsiveness to cytokines
EP0931149B1 (en) A novel haemopoietin receptor and genetic sequences encoding same
WO1998011225A9 (en) A novel haemopoietin receptor and genetic sequences encoding same
US6911530B1 (en) Haemopoietin receptor and genetic sequences encoding same
US20080274973A1 (en) novel haemopoietin receptor and genetic sequences encoding same
CA2250207A1 (en) A novel mammalian gene, bcl-w, belongs to the bcl-2 family of apoptosis-controlling genes
AU781446B2 (en) Novel genes and their use in the modulation of obesity, diabetes and energy imbalance
CA2307839A1 (en) Gene involved in metabolic energy and obesity
AU767972B2 (en) A novel haemopoietin receptor and genetic sequences encoding same
CA2508632A1 (en) Dec-205 (ly 75) / dcl-1 intergenic splice variants associated with hodgkin's disease, and uses thereof
AU711646B2 (en) Novel receptor ligands and genetic sequences encoding same
AU731968B2 (en) A novel haemopoietin receptor and genetic sequences encoding same
AU728863B2 (en) A novel mammalian gene, bcl-w, belongs to the bcl-2 family of apoptosis-controlling genes
US7220828B2 (en) Haemopoietin receptor and genetic sequence encoding same
ZA200305965B (en) Nucleic acid expressed in the hypothalamus or muscle tissue in obese animals
AU774591B2 (en) Novel molecules
US20060294608A1 (en) Novel haemopoietin receptor and genetic sequences encoding same
US7192576B1 (en) Biologically active complex of NR6 and cardiotrophin-like-cytokine
AU774097B2 (en) A novel regulatory molecule and genetic sequences encoding same
AU741708B2 (en) A new cytokine family and uses thereof
WO2003031468A1 (en) Therapeutic and diagnostic molecules that are capable of interacting with socs proteins

Legal Events

Date Code Title Description
FGA Letters patent sealed or granted (standard patent)