AU2450102A - Transgenic mammals having human IG LOCI including plural Vh and Vk regions and antibodies produced therefrom - Google Patents

Description

AUSTRALIA

Patents Act 1990 COMPLETE SPECIFICATION FOR A STANDARD PATENT Name of Applicant Actual Inventors Abgenix, Inc.

Larry GREEN, Aya JAKOBOVITS, KUCHERLAPATI, Sue KLAPHOLZ and

MENDEZ

Raju Michael Address for Service: Invention Title: CULLEN CO Patent Trade Mark Attorneys, 239 George Street Brisbane QId 4000 Australian Transgenic Mammals Having Human IG LOCI Including Plural VH and VR Regions and Antibodies Produced Therefrom Details of Associated Provisional Applications Australian 57022/98 Patent Application The following statement is a full description of this invention, including the best method of performing it, known to us: This invention has been divided from the specification of Australian Patent Application No. 57022/98.

FIELD OF THE INVENTION The present invention relates to transgenic non-human animals that are engineered to contain human immunoglobulin gene loci. In particular, animals in accordance with the invention possess human Ig loci that include plural variable (VH and VK) gene regions. Advantageously, the inclusion of plural variable region genes enhances the specificity and diversity of human antibodies produced 20 by the animal. Further, the inclusion of such regions enhances and reconstitutes B-cell development to the animals, such that the animals possess abundant mature B-cells secreting extremely high affinity antibodies.

BACKGROUND OF THE TECHNOLOGY The ability to clone and reconstruct megabase-sized human loci in YACs and to introduce them into the mouse germline provides a powerful approach to elucidating the functional components of very large or crudely mapped loci as well as generating useful models of human disease.

Furthermore, the utilization of such technology for substitution of mouse loci with their human equivalents could provide unique insights into the expression and regulation of human gene products during development, their communication with other systems, and their involvement in disease induction and progression.

An important practical application of such a strategy is the "humanization" of the mouse humoral immune system. Introd.ction of human immunoglobulin (Ig) loci into mice in which 'he endogenous Ig genes have been inactivated offers the opportunity to study of the mechanisms underlying programmed expression and assembly of antibodies as well as their role in B-cell developn.it. Furthermore, such a strategy could provide an ideal source for production of fully human monoclonal antibodies (Mabs) an important milestone towards fulfilling the promise of antibody therapy in human disease. Fully human antibodies are expected to minimize the immunogenic and allergic responses intrinsic to mouse or mouse-derivatized Mabs and thus to increase the efficacy and safety of the administered antibodies. The use of fully human antibodies can be expected to provide a substantial advantage in the treatment of chronic and recurring human diseases, such as inflammation, autoimmunity, and cancer, which require repeated antibody administrations.

One approach towards this goal was to engineer mouse strains deficient in mouse antibody production with large fragments of the human Ig loci in anticipation that such mice would produce 15 a large repertoire of human antibodies in the absence of mouse antibodies. Large human Ig fragments would preserve the large variable gene diversity as well as the proper regulation of antibody production and expression. By exploiting the mouse machinery for antibody diversification and selection and the lack of immunological tolerance to human proteins, the reproduced human antibody repertoire in these mouse strains should yield high affinity antibodies against any antigen of interest, including human antigens. Using the hybridoma technology, antigen-specific human Mabs with the desired specificity could be readily produced and selected.

This general strategy was demonstrated in connection with our generation of the first XenoMouse T M strains as published in 1994. See Green et al. Nature Genetics 7:13-21 (1994). The XenoMouse

T

M strains were engineered with 245 kb and 190 kb-sized germline configuration fragments of the human heavy chain loci and kappa light chain loci, respectively, which contained core variable and constant region sequences Id The human Ig containing yeast artificial chromosomes (YACs) proved to be compatible with the mouse system for both rearrangement and expression of antibodies, and were capable of substituting for the inactivated mouse Ig genes. This was demonstrated by their ability to induce B-cell development and to produce an adult-like human -2repertoire of fully human antibodies and to generate antigen-specific human Mabs. These results also suggested that introduction of larger portions of the human Ig loci containing greater numbers of V genes, additional regulatory elements, and human Ig constant regions might recapitulate substantially the full repertoire that is characteristic of the human humoral response to infection and immunization.

S Such approach is further discussed and delineated in U.S. Patent Application Serial Nos.

07/466,008, filed January 12, 1990, 07/610,515, filed November 8, 1990, 07/919,297, filed July 24, 1992, 07/922,649, filed July 30, 1992, filed 08/03 1,801, filed March 15,1993, 08/112,848, filed August 27, 1993, 08/234,145, filed April 28, 1994, 08/376,279, filed January 20, 1995, 08/430, 938, April 27, 1995, 08/46'i,584, filed June 5, 1995, 08/464,582, filed June 5, 1995, 08/463,19 1, filed June 5, 1995, 08/462,837, filed June 5, 1995, 08/486,853, filed June 5, 1995, 08/486,857, filed June 1995, 08/486,859, filed June 5, 1995, 08/462,5 13, filed June 5, 1995, and 08/724,752, filed October 2, 1996. See also European Patent No., EP 0 463 151 BI, grant published June 12. 1996, International Patent Application No., WO) 94/02602, published February 3, 1994, International Patent Application No., WO 96/34096, published October 31, 1996, and PCT Application No.

15 PCT/US96/05928, filed April 29, 1996. The disclosures of each of the above-cited patents and :applications are hereby incorporated by reference in their entirety.

In an alternative approach, others, including GenPharm International, Inc., have utilized a "minilocus" approach. In the minilocus approach, an exogenous Ig locus is mimicked through the .inclusion of pieces (individual genes) from the Ig locus. Thus, one or more V1, genes, one or more DH genes, one or morejH genes, a mu constant region, and a second constant region (preferably a gamma constant region) are formed into a construct for insertion into an animal. This approach is described in U.S. Patent No. 5,545,807 to Surani et al. and U.S. Patent Nos. 5,545,806 and 5,625,825, both to Lonberg and Kay, and GenPharm International U.S. Patent Application Serial Nos. 07/574,748, filed August 29, 1990, 07/575,962, filed August 31, 1990, 07/8 10,279, filed December 17, 1991, 07/853,408, filed March 18, 1992, 07/904,068, filed June 23, 1992, 07/990,860, filed December 16, 1992, 08/053,13 1, filed April 26, 1993, 08/096,762, filed July 22, 1993, 08/155,301, filed November 18, 1993, 08/161,739, filed December 3, 1993, 08/165,699, filed December 10, 1993, 08/209,741, filed March 9, 1094, the disclosures of which are hereby incorporated by reference. See also International Patent Application Nos. WO 94/25585, published -3.

November 10, 1994, WO 93/12227, published June 24, 1993, WO 92/22645, published December 23, 1992, WO 92/03918, published March 19, 1992, the disclosures of which are hereby incorporated by reference in their entirety. Seefurther Taylor et al., 1992, Chen et al., 1993, Tuaillon et al., 1993, 'Choi et al., 1993, Lonberg et al., (1994), Taylor et al., (1994), and Tuaillon et al., (1995), the disclosures of which are hereby incorporated by reference in their entirety.

The inventors ofSurani et al., cited above, and assigned to the Medical Research Counsel (the produced a transgenic mouse possessing an Ig locus through use of the minilocus approach.

The inventors on the GenPharm International work, cited above, Lonberg and Kay, following the lead of the present inventors, proposed inactivation of the endogenous mouse Ig locus coupled with substantial duplication of the Surani et al. work.

An advantage of the minilocus approach is the rapidity with which constructs including portions of the Ig locus can be generated and introduced into animals. Commensurately, however, a significant disadvantage of the minilocus approach is that, in theory, insufficient diversity is introduced through the inclusion of small numbers of V, D, and J genes. Indeed, the published work 15 appears to support this concern. B-cell development and antibody production of animals produced through use of the minilocus approach appear stunted. Therefore, the present inventors have consistently urged introduction of large portions of the Ig locus in order to achieve greater diversity and in an effort to reconstitute the immune repertoire of the animals.

Accordingly, it would be desirable to provide transgenic animals containing more complete germline sequences and configuration of the human Ig locus. It would be additionally desirable to provide such locus against a knockout background of endogenous Ig.

S

SUMMARY OF THE INVENTION Provided in accordance with the present invention are transgenic animals having a near complete human Ig locus, including both a human heavy chain locus and a human kappa light chain locus. Preferably, the heavy chain locus includes greater than about 20%, more preferably greater than about 40%, more preferably greater than about 50%, and even more preferably greater than about 60% of the human heavy chain variable region. In connection with the human kappa light chain, preferably, the locus includes greater than about 2 more preferably greater than about -4more preferably greater than about 50%, and even more preferably greater than about 60% of the human kappa light chain variable region. Such percentages preferably refer to percentages of functional variable region genes.

Further, preferably such animals include the entire DH region, the entire JH region, the human mu constant region, and can additionally be equipped with genes encoding other human constant regions for the generation of additional isotypes. Such isotypes can include genes encoding y 2 a, e, P, and other constant region encoding genes. Alternative constant regions can be included on the same transgene, downstream from the human mu constant region, or, alternatively, such other constant regions can be included on another chromosome. It will be appreciated that where such other constant regions are included on the same chromosome as the chromosome including the human mu constant region encoding transgene, cis-switching to the other isotype or isotypes can be accomplished. On the other hand, where such other constant region is included on a different chromosome from the chromosome containing the mu constant region encoding transgene, transswitching to the other isotype or isotypes can be accomplished. Such arrangement allows tremendous 15 flexibility in the design and construction of mice for the generation of antibodies to a wide array of antigens.

Preferably, such mice additionally do not produce functional endogenous immunoglobulins.

This is accomplished in a preferred embodiment through the inactivation (or knocking out) of endogenous heavy and light chain loci. For example, in a preferred embodiment, the mouse heavy chain J-region and mouse kappa light chain J-region and C,-region are inactivated through utilization of homologous recombination vectors that replace or delete the region. Such techniques are described in detail in our earlier applications and publications.

Unexpectedly, transgenic mice in accordance with the invention appear to possess an almost entirely reconstituted immune system repertoire. This is dramatically demonstrated when four separate mouse strains are compared: a first strain contains extensive human heavy chain variable regions and human kappa light chain variable regions and encodes only a mu isotype, a second strain contains extensive human heavy chain variable regions and human kappa light chain variable regions and encodes a mu and gamma-2 isotypes, a third strain contains significantly less human heavy and kappa light chain variable regions, and a fourth strain contains a double-inactivated mouse Ig locus.

The first and second strains undergo similar, if not identical, B-cell development, whereas the third strain has a reduced development and maturation of B-cells, and the fourth strain contains no mature B-cells. Further, it is interesting to note that production of human antibodies in preference to mouse antibodies is substantially elevated in mice having a knock-out background of endogenous Ig. That is to say that mice that contain a human Ig locus and a functionally inactivated endogenous Ig produce human antibodies at a rate of approximately 100 to 1000 fold as efficiently as mice that contain only a human Ig locus.

Thus, in accordance with a first aspect of the present invention there is provided a transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous immunoglobulin (Ig) locus, such that the mammal would not display normal B-cell development; an inserted human heavy chain Ig locus in substantially germline S configuration, the human heavy chain Ig locus comprising a human mu constant region and regulatory and switch sequences thereto, a plurality of human J, genes, a plurality of human DH genes, and a plurality of human VH genes; and an inserted human kappa light chain Ig locus in substantially 15 germline configuration, the human kappa light chain Ig locus comprising a human kappa constant region, a plurality of JK genes, and a plurality of VK genes, wherein the number of V, and VK genes inserted are selected to substantially restore normal B-cell development in the mammal. In a preferred embodiment, the heavy chain Ig locus comprises a second constant region selected from the group consisting of human gamma-1, human gamma-2, human gamma-3, human gamma-4, alpha, delta, and epsilon. In another preferred embodiment, the number of VH genes is greater than about 20. In Sanother preferred embodiment, the number of VK genes is greater than about 15. In another preferred embodiment, the number ofD, 1 genes is greater than about 25, the number of J, genes is greater than about 4, the number of VH genes is greater than about 20, the number of JK genes is greater than about 4, and the number of VK genes is greater than about 15. In another preferred embodiment, the number of genes, the number of J genes, the number of V 1 genes, the number of JK genes, and the number of VK genes are selected such that the Ig loci are capable of encoding greater than about 1 x 10' different functional antibody sequence combinations. In a preferred embodiment, in a population of mammals B-cell function is reconstituted on average to greater than about 50% as compared to wild type.

-6- In accordance with a second aspect of the present invention there is provided an improved transgenic non-human mammal having a genome thr.t comprises modifications, the "odifications rendering the mammal capable of producing human immunoglobulin molecules but substantially incapable of producing functional endogenous immunoglobulin molecules, the improvement comprising: insertion into the genome of the mammal of sufficient human VH, DH, JH, VK, and JK genes such that the mammal is capable encoding greater than about 1 x 106 different functional human immunoglobulin sequence combinations.

In accordance with a third aspect of the present invention, there is provided an improved transgenic non-human mammal having a genome that comprises modifications, the modifications rendering the mammal capable of producing human immunoglobulin molecules but substantially incapable of producing functional endogenous immunoglobulin molecules, which modifications, with respect to the mammal's incapacity to produce functional endogenous immunoglobulin molecules would not allow the mammal to display normal B-cell development, the improvement comprising: insertion into the genome of the mammal of sufficient human VH, DH, JH, VK, and Jr genes such that 15 the mammal is capable of encoding greater than about 1 x 106 different functional human immunoglobulin sequence combinations and sufficient V H and VK genes to substantially restore normal B-cell development in the mammal. In a preferred embodiment, in a population of mammals B-cell function is reconstituted on average to greater than about 50% as compared to wild type.

In accordance with a fourth aspect of the present invention, there is provided a transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprsing: an inactivated endogenous heavy chain immunoglobulin (Ig) locus; an inactivated endogenous kappa light chain Ig locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yH2; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2.

In accordance with a fifth aspect of the present invention there is provided a transgenic nonhuman mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglubulin (Ig) locus; an inserted human -7heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nur'otide sequence ofyH2; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence ofyK2.

In accordance with a sixth aspect of the present invention, there is provided a transgenic nonhuman mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglubulin (Ig) locus; an inactivated endogenous kappa light chain Ig locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence ofyH2 without the presence of a human gamma-2 constant region; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence S. substantially corresponding to the nucleotide sequence ofyK2.

I n accordance with a seventh aspect of the present invention, there is providedk transgenic non-human mammal having a genome, the genome comprising modifications, the 15 modifications comprising: an inactivated endogenous heavy chain immunoglubulin (Ig) locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yH2 without the presence of a human gamma-2 constant region; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2.

SIn accordance with an eighth aspect of the present invention, there is provided a method for the production of human antibodies, comprising: inoculating any of the mammals of the first through fifth aspects of the invention discussed above with an antigen; collecting and immoralizing lymphocytic cells to obtain an immortal cell population secreting human antibodies that specifically bind to the antigen with an affinity of greater than 10I and isolating the antibodies from the immortal cell populations.

In a preferred embodiment, the antigen is IL-8. In another preferred embodiment, the antigen is EGFR. In another preferred embodiment, the antigen is TNF-a.

In accordance with a ninth aspect of the present invention, there is provided an antibody -8produced by the method of the sixth aspect of the invention, including antibodies to IL-8, EGFR, and TNF-a.

In accordance with a tenth aspect of the present invention, there is provided an improved method for the production of transgenic mice, the transgenic mice having a genome, the genome comprising modifications, the modifications comprising insertion of a plurality of human variable regions, the improvement comprising: insertion of the human variable regions from a yeast artificial chromosome.

In accordance with an eleventh aspect of the present invention, there are provided transgenic mice and transgenic offspring therefrom produced through use of the improvement of the eighth aspect of the present invention.

In accordance with a twelfth aspect of the present invention, there is provided a transgenic mammal, the transgenic mammal comprising a genome, the genome comprising modifications, the modifications comprising an inserted human heavy chain immunoglobulin transgene, the improvement comprising: the transgene comprising selected sets of human variable region genes that enable human- 15 like junctional diversity and human-like complementarity determining region 3 (CDR3) lengths. In a preferred embodiment, the human-like junctional diversity comprises average N-addition lengths of 7.7 bases. In another preferred embodiment, the human-like CDR3 lengths comprise between about 2 through about 25 residues with an average of about 14 residues.

BRIEF DESCRIPTION OF THE DRAWING FIGURES Figure IA-1B are a schematic representation of the reconstructed human heavy chain and human kappa light chain loci YACs introduced into preferred mice in accordance with the invention.

SYACs spanning the human heavy chain (1H, 2H, 3H, and 4H) and the human kappa light chain proximal (1K, 2K, and 3K) loci were cloned from human-YAC libraries. The locations of the different YACs with respect to the human Ig loci (adopted from Cook and Tomlinson, 1995, and Cox et al., 1994), their sizes, and non-Ig sequences are indicated (not shown to scale). The YACs were recombined into yeast in a two-step procedure (see Materials and Methods) to reconstruct the human heavy and kappa light chain YACS yH2, the human heavy chain containing YAC, was further retrofitted with a human y, gene sequence. yK2, was the human kappa light chain containing YAC. The YAC vector elements: telomere A, centromere 0, mammalian (HPRT, Neo) and yeast selectable markers (TRP1, ADE2, LYS2, LEU2, URA3, HIS3) on the YAC vector arms are indicated. VH segments are classified as genes with open reading frame 0, pseudogenes 0, and unsequenced genes 0. V, segments are classified as genes with open reading frames 0, and pseudogenes 0. The V genes that we have found to be utilized by the XenoMouse II are marked The VH gene region contained on yH2 is marked by arrows.

Figures 2A-2I show a series of Southern Blot analyses and characterizations of the human heavy chain YAC, yH2, integrated in ES cells and in XenoMouse strains. Figures 2A-2E show a series of Southern Blot analyses of EcoRI (Figs. 2A, 2C) and BamHI (Figs. 2B, 2D, 2E) digested DNA (2pg) prepared from the CGM1 immortalized B-lymphoblast cell line derived from the Washington University YAC library source (Brownstein et al., 1989), yH2 YAC (0.5 pg YAC added to 2 pg of 3B1 DNA), unmodified E14TG.3B1 (3B1), and yH2-containing ES cell lines: L10, J9.2, L18, L17, and J17. The probes used for blotting were human VH1 (Fig. 2A), DH (Fig. 2B) [18 kb fragment in CGMI lane represents D segments on chromosome 16], V, 3 (Fig. 2C), Cp (Fig. 2D) and JH (Fig. 2E).

%15 Figures 2F-2G show a series of Southern Blot analyses of EcoRI (Figs. 2F, 2G) and BamHI (Figs. 2H, 21) digested DNA (10 pg) that was prepared from the tails ofwildtype (WT, 129xB57BL/6J), XM2A- 1, and XM2A-2 (2 individual offspring) mice or from the parental yH2-containing ES cell lines (slightly underloaded relative to other samples), J9.2, and yK2-containing ES cell line J23.1. The probes used were human VHI (Fig. 2F), V, 4 (Fig. 2G), human y-2 (Fig. 2H), and mouse 3'-enhancer (Fig. 21, the 5kb band represents the endogenous mouse 3'-enhancer fragment). Fragment sizes of molecular weight markers (in kb) are indicated.

O. Figures 3A-I show a series of Southern Blot analyses characterizing the human kappa light chain YAC, yK2, integrated in ES cells and in XenoMouse 2A Strains. Figure 3A-E show a series of Southern Blot analyses of EcoRI (Figs. 3A, 3C, 3D) and BamHI (Figs. 3B, 3E digested DNA (2 pg) prepared from CGMI cell line (Brownstein et al., 1989, supra), yK2 YAC (0.5 lg YAC DNA added to 2 pg of3B1 DNA), unmodified E14TG.3BI (3B1), and yK2-containing ES cell lines: J23.1 and J23.7. The probes used were human Va (Fig 3A), Kde (Fig. 3B), VII (Fig. 3C), VIII (Fig. 3D), and C, (Fig. 3E). Figure 3F-3I show a series of Southern Blot analyses ofEcoRI-digested DNA (2 pg) that was prepared from the tails of wildtype (WT, 129xB6), XM2A-1, and XM2A-2 (2 individual offspring) mice or from the parental yH2-containing ES cell lines L10 (slightly underloaded relative to other samples), J9.2, and yK2-containing ES cell line J23.1. The probes that were used were human VI (Fig. 3F), VJV (Fig. 3G), V,VI (Fig. 3H) and 3'-enhancer (Fig. 31). Fragment sizes of molecular weight markers (in kb) are indicated.

Figures 4A-4T shows B-cell reconstitution and surface expression of human p, 8, and K chains on XenoMouse-derived B-cells and shows flow cytometry analysis of peripheral blood (Figs. 4A-4H) and spleen (Figs. 4I-4T) lymphocytes from wildtype mice double inactivated mice and XenoMouse strains 2A-1 and 2A-2 (XM2A-1, XM2A-2). Four-color flow cytometry analysis was carried out using antibodies to the B-cell-specific marker B220 in combination with anti-human 4, 8, K, or mouse p, 6, K, or The percentage of positively-stained cells is shown in each quadrant.

Isolation and staining of cells were performed as described in Materials and Methods. Populations of human K and mouse K. cells were determined after first gating for B220'p populations in the o indicated region. Populations of p and 6 cells were determined after first gating for B220' cells.

The percentage of positive cells within a region or quadrant is indicated. The FACS profiles shown 15 are representative of several experiments performed on each of the strains.

Figures 5A-5C show that XenoMouse-derived human antibodies block the binding of their specific antigens to cells. Figure 5A shows the inhibition of labeled [I' 2 ]IL-8 binding to human neutrophils by the mouse anti-human IL-8 antibody (R&D Systems) and the fully human Mabs D. 1 K2.2 K4.2 and K4.3 The background binding of labeled [Il 25 ]IL-8 in the 20 absence of antibody was 2657 cpm. Figure 5B shows the inhibition of labeled [I1 2 ']EGF to its receptors on A431 cells by mouse anti-human EGFR antibodies 225 and 528 respectively; Calbiochem) and the fully human antibodies El.1 E2.4 E2.5 and E2.11 The background binding of [I' 2 5 ]EGF in the absence of antibodies was 1060 cpm. Figure 5C shows inhibition of labeled [I12'] TNF-a binding to its receptors on U937 cells by the mouse anti-human TNF-a antibody (R&D Systems) and fully human Mabs T22.1 T22.4 T22.8 and T22.9 The background binding of [I 1 2 ]TNF-a in the absence of antibody was 4010 cpm.

Control human IgG 2 myeloma antibody Figures 6A-6D show repertoire and somatic hypermutation in XenoMouse-derived fully human Mabs. Predicted amino acid sequences of four anti-IL-8 (Figs. 6A, 6B) and four anti-EGFR 11-

I

(Figs. 6C, 6D) human IgG 2 K Mabs, divided into CDRI, CDR2 and CDR3 and the constant regions, Cy2 and The D and J genes of each antibody are indicated. The amino acid substitutions from the germline sequences are indicated in bold letters.

Figure 7 is a schematic diagram of the human heavy chain genome and the human kappa light chain genome.

Figure 8 is another schematic diagram showing the construction of the yH2 (human heavy chain) YAC.

Figure 9 is another schematic diagram showing the construction of the yK2 (human kappa light chain) YAC.

Figure 10 is another schematic diagram showing the construction of the yK2 (human kappa light chain) YAC.

Figures 11A-11I show a series of Southern Blot analyses demonstrating integration intact of S the yH2 (human heavy chain) YAC into ES cells and into the mouse genome. Detailed discussion is provided in connection with Figure 2.

Figures 12A-12I show a series of Southern Blot analyses demonstrating integration intact of the yK2 (human kappa light chain) YAC into ES cells and into the mouse genome. Detailed discussion S is provided in connection with Figure 3.

Figures 13A-13F show B-cell reconstitution and surface expression of human u, 6, and K chains and mouse X chains on XenoMouse-derived B-cells and shows flow cytometry analysis of peripheral blood. Further details are provided in connection with Figure 4.

Figure 14 shows production levels of human antibodies by XenoMouse II strains in comparison to murine antibody production by wild type mice.

Figure 15 is a repertoire analysis of human heavy chain transcripts expressed in XenoMouse II strains.

Figure 16 is a repertoire analysis of human kappa light chain transcripts expressed in XenoMouse II strains.

Figure 17 is another depiction of the diverse utilization of human VH and VK genes that have been observed as utilized in XenoMouse II strains.

Figure 18 shows the titers of human antibody production in XenoMouse II strains.

12- Figure 19 is a depiction of gene utilization of anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 20 shows heavy chain amino acid sequences of anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 21 shows kappa light chain amino acid sequences of anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 22 shows blockage of IL-8 binding to human neutrophils by human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 23 shows inhibition ofCD Ilb expression on human neutrophils by human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 24 shows inhibition of IL-8 induced calcium influx by human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 25 shows inhibition of IL-8 RB/293 chemotaxsis by human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 26 is a schematic diagram of a rabbit model of human IL-8 induced skin inflammation.

SFigure 27 shows the inhibition of human IL-8 induced skin inflammation in the rabbit model of Figure 26 with human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 28 shows inhibition of angiogenesis of endothelial cells on a rat corneal pocket model by human anti-IL-8 antibodies derived from XenoMouse II strains.

Figure 29 is a depiction of gene utilization of human anti-EGFR antibodies derived from XenoMouse II strains.

Figure 30 shows heavy chain amino acid sequences of human anti-EGFR antibodies derived from XenoMouse II strains.

Figure 31 shows blockage EGF binding to A431 cells by human anti-EGFR antibodies derived from XenoMouse II strains.

Figure 32 shows inhibition of EGF binding to SW948 cells by human anti-EGFR antibodies derived from XenoMouse II strains.

Figure 33 shows that human anti-EGFR antibodies derived from XenoMouse II strains inhibit growth of SW948 cells in vitro.

13 Figure 34 shows inhibition of TNF-a binding to U937 cells through use of human anti-TNF-a antibodies derived from XenoMouse II strains.

Figure 35 shows kappa light chain amino acid sequences of human anti-EGFR antibodies derived from XenoMouse II strains.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS Herein we describe the generation and characterization of several strains of mice containing substantially germline configuration megabase-sized human Ig loci. The present invention thus provides the first demonstration of reconstruction of the large and complex human Ig loci on YACs and the successful introduction of megabase-sized YACs into mice to functionally replace the corresponding mouse loci.

Mouse Strains The following mouse strains are described and/or utilized herein: ".15 Double Inactivated Strain: The DI strain of mice are mice that do not produce functional endogenous, mouse, Ig. In preferred embodiments, the DI mice possess an inactivated mouse JH region and an inactivated mouse CK region. The construction of this strain is discussed extensively elsewhere. For example, the techniques utilized for generation of the DI strains are described in detail in U.S. Patent Application Serial Nos. 07/466,008, filed January 12, 1990, 07/610,515, filed November 8, 1990, 07/919,297, filed July 24, 1992, 08/031,801, filed March 1993, 08/112,848, filed August 27, 1993, 08/234,145, filed April 28, 1994, 08/724,752, filed October 2, 1996. See also European Patent No., EP 0 463 151 Bl, grant published June 12, 1996, International Patent Application No., WO 94/02602, published February 3, 1994, International Patent Application No., WO 96/34096, published October 31, 1996, and PCT Application No.

PCT/US96/05928, filed April 29, 1996. The disclosures of each of the above-cited patent and patent applications are hereby incorporated by reference in their entirety. It has been observed and reported that DI mice possess a very immature B-cell development The mice do not produce mature B-cells, only pro-B-cells.

14- XenoMouse IStrain: The design, construction, and analysis of the XenoMouse I strain was discussed in detail in Green et al., Nature Genetics, 7:13-21 (1994). Such mice pro .jced IgMK antibodies against a DI background. The mice showed improved B-cell function when compared to the DI strain of mice which have little to no B-cell development. While XenoMouse I strains of mice were capable of mounting a sizeable immune response to antigenic challenge, there appeared to be inefficient in their production ofB-cells and possessed a limited response to different antigens which apparently was related to their limited V-gene repertoire.

L6 Strain: The L6 strain is a mouse producing IgMi antibodies against a DI background 10 of endogenous mouse Ig. L6 mice contain an inserted human heavy chain and an inserted human kappa light chain. The L6 strain is generated through breeding of a mouse containing a heavy chain insert against a double inactivated background (L6H) and a mouse having a kappa light chain insert *:ig against a double inactivated background (L6L). The heavy chain insert comprises an intact approximately 970 kb human DNA insert from a YAC containing approximately 66 V, segments, 15 starting at V, 6 -1 and ending at V,3-65, and including the major D gene clusters (approximately 32), JH genes the intronic enhancer Cu, and through about 25 kb past C6, in germline configuration. The light chain insert comprises an intact approximately 800 kb human DNA insert from a YAC which contains approximately 32 V, genes starting at and ending at The 800 kb insert contains a deletion of approximately 100 kb starting at V,.L,1 3 and ending at 20 However, the DNA is in germline configuration from 1 3 to 100 kb past and also contains the J, genes, the intronic and 3' enhancers, the constant C, gene, and Kde. The L6H and L6L mice have been shown to access the full spectrum of the variable genes incorporated into their genome.

It is expected that the L6 mice will similarly access the full spectrum of variable genes in their genome. Furthermore, L6 mice will exhibit predominant expression of human kappa light chain, a large population of mature B-cells, and normal levels of IgM, human antibodies. Such mice will mount a vigorous human antibody response to multiple immunogens, ultimately yielding antigen-specific fully human Mabs with subnanomolar affinities.

enoMouse a Strain: The XenoMouse fla mice represent our second generation XenoMouse T strains equipped with germline configuration megabase-sized human Ig loci, against a DI background, such th. the mice do not produce functional endogenous Ig. Essentially, the mice are equivalent in construction to the L6 strain, but additionally include the human y2 gene with its entire switch and regulatory sequences and the mouse 3' enhancer in cis. The mice contain an approximately 1020 kb heavy and an approximately 800 kb kappa light chain loci, reconstructed on YACs, which include the majority of the human variable region genes, including heavy chain genes (approximately 66 VH) and kappa light chain genes (approximately 32 VJ, human heavy constant region genes 6, and y) and kappa constant region genes and all of the major identified regulatory elements. These mice have been shown to access the full spectrum of the variable genes 10 incorporated into their genome. Furthermore, they exhibit efficient class switching and somatic hypermutation, predominant expression of human kappa light chain, a large population of mature Bcells, and normal levels of IgM and IgG, human antibodies. Such mice mount a vigorous human antibody response to multiple immunogens, including human IL-8, human EGF receptor (EGFR), and human tumor necrosis factor-a (TNF-a), ultimately yielding antigen-specific fully human Mabs with 15 subnanomolar affinities. This last result conclusively demonstrates XenoMousem as an excellent source for rapid isolation of high affinity, fully human therapeutic Mabs against a broad spectrum of antigens with any desired specificity.

:As will be appreciated from the above-introduction, the XenoMouse II strain appears to undergo mature B-cell development and mount powerful adult-human-like immune responses to 20 antigenic challenge. The L6 strain, as predicted from the data in connection with L6L and L6H mice, o also appear to undergo mature B-cell development and mount powerful adult-human-like immune responses to antigenic challenge. When DI mice are compared to XenoMouse I strains and DI and XenoMouse I strains are compared to L6 and XenoMouse II strains, a markedly different B-cell development profile is observed. Owing to this difference, it appears that the quantity and/or quality of variable region sequences introduced into the animals are essential to the induction B-cell maturation and development and the generation of an adult-human-like immune response. Thus, in addition to the strains' clear use in the generation of human antibodies, the strains provide a valuable tool for studying the nature of human antibodies in the normal immune response, as well as the abnormal response characteristic of autoimmune disease and other disorders.

16- Variable Region Quantitative Diversity It is predicted that *he specificity of antibodies the ability to generate antibodies to a wide spectrum of antigens and indeed to a wide spectrum of independent epitopes thereon) is dependent upon the variable region genes on the heavy chain and kappa light chain (Vj) genome. The human heavy chain genome includes approximately 95 functional genes which encode variable regions of the human heavy chain ofimmunoglobulin molecules. In addition, the human light chain genome includes approximately 40 genes on its proximal end which encode variable regions of the human kappa light chain of immunoglobulin molecules. We have demonstrated that the specificity of antibodies can be enhanced through the inclusion of a plurality of genes encoding variable light and heavy chains.

Provided in accordance with the present invention are transgenic mice having a substantial portion of the human Ig locus, preferably including both a human heavy chain locus and a human kappa light chain locus. In preferred embodiments, therefore, greater than 10% of the human VH and V, genes are utilized. More preferably, greater than about 20%, 30%, 40%, 50%, 60%, or even or greater of VH and V, genes are utilized. In a preferred embodiment, constructs including 32 genes on the proximal region of the V, light chain genome are utilized and 66 genes on the V a portion of the genome are utilized. As will be appreciated, genes may be included either sequentially, in the order found in the human genome, or out of sequence, in an order other than that found in the human genome, or a combination thereof Thus, by way of example, an entirely sequential portion 20 of either the VH or V, genome can be utilized, or various V genes in either the VH or V, genome can be skipped while maintaining an overall sequential arrangement, or V genes within either the VH or V, genome can be reordered, and the like. In a preferred embodiment, the entire inserted locus is provided in substantially germline configuration as found in humans. In any case, it is expected and the results described herein demonstrate that the inclusion of a diverse array of genes from the and V, genome leads to enhanced antibody specificity and ultimately to enhanced antibody affinities.

Further, preferably such mice include the entire region, the entire JH region, the human mu constant region, and can additionally be equipped with other human constant regions for the coding and generation of additional isotypes of antibodies. Such isotypes can include genes encoding y 2

Y

3

Y

4 a, E, and 6 and other constant region encoding genes with appropriate switch and regulatory 17sequences. As will be appreciated, and as discussed in more detail below, a variety of switch and regulatory sequences can be appropriately utilized in connection with any particular constant region selection.

The following Table indicates the diversity of antibody combinations that are possible in humans, based strictly on random V-D-J joining and combination with kappa light chains, without consideration of N-addition or somatic mutation events. Based on these considerations, there are greater than 3.8 million possible antibody combinations in humans, of any particular isotype.

TABLE

15 Region Heavy Chain Kappa Light Chain Variable -95 Diversity 232 Joining 6 Combinations (VxDxJ) 18,240 200 Total Combinations (HC Combinations x LC 3.65 X 106 Combinations) a 20 In connection with a preferred embodiment of the invention, through the inclusion of about 66 genes and 32 V, genes in a mouse with a full complement of D H, J n, and J genes, the possible diversity of antibody production is on the order of 2.03 X 10 6 different antibodies. As before, such calculation does not take into account N-addition or somatic mutation events.

Therefore, it will be appreciated that mice in accordance with the invention, such as the L6 and the XenoMouse II strains, offer substantial antibody diversity. In preferred embodiments, mice are designed to have the capability of producing greater than 1 X 10' different heavy chain V-D-J combinations and kappa light chain V-J combinations, without accounting for N-additions or somatic mutation events.

18- Variable Region Oualitative Diversi In addition to quantitative diversity, quantitative selection of V-genes large and diverse numbers of V-genes) and/or qualitative selection of V-genes selection of particular V-genes) appears to play a role in what we refer to herein as "qualitative diversity." Qualitative diversity, as used herein, refers to diversity in V-D-J rearrangements wherein junctional diversity and/or somatic mutation events are introduced. During heavy chain rearrangement, certain enzymes (RAG-1, RAG- 2, and possibly others) are responsible for the cutting of the DNA representing the coding regions of the antibody genes. Terminal deoxynucleotidyl transferase (Tdt) activity is upregulated which is 10 responsible for N-terminal additions of nucleotides between the V-D and D-Jgene segments. Similar enzymes and others (SCID and other DNA repair enzymes) are responsible for the deletion that occurs at the junctions of these coding segments. With respect to junctional diversity, both Naddition events and formation of the complementarity determining region 3 (CDR2, are included within such term. As will be appreciated, CDR3 is located across the D region and includes the V-D 15 and D-Jjunctional events. Thus, N-additions and deletions during both D-J rearrangement and V-D rearrangement are responsible for CDR3 diversity.

It has been demonstrated that there are certain differences between murine and human junctional diversities. In particular, some researchers have reported that murine N-addition lengths and CDR3 lengths are generally shorter than typical human N-addition lengths and CDR3 lengths.

20 Such groups have reported that, in humans, N-additions of about 7.7 bases in length, on average, are typically observed. Yamada et al. (1991). Mouse-like N-additions are more often on the order of about 3 bases in length, on average. Feeney et al. (1990). Similarly, human-like CDR3 lengths are longer than mouse-like CDR3's. In man CDR3 lengths of between 2 and 25 residues, with an average of 14 residues, is common. In mice, some groups have reported shorter average CDR3 lengths.

The junctional diversity created by N-additions and CDR3 additions play a clear role developing antibody specificity.

In accordance with the invention, rearranged V-D-J gene sequences show N-addition lengths that are comparable to expected adult-human N-addition lengths. Further, amino acid sequences across the open reading frame (ORF) corresponding to CDR3 sequences show CDR3 lengths that -19are comparable to expected adult-human CDR3 lengths. Such data is indicative that quantitative variable region diversity and/or qualitative variable region diversity results in human-like junctional diversity. Such junctional diversity is expected to lead to a more human-like antibody specificity.

Variable Reion Affinities While we have not conclusively demonstrated a direct causal connection between the increased variable region inclusion and antibody specificity, it appears, and it is expected that through providing such diversity, the ability of the mouse to mount an immune response to a wide array of antigens is possible and enhanced. Additionally, such mice appear more equipped to mount immune S 10 responses to a wide array of epitopes upon individual antigens or immunogens. From our data it also appears that antibodies produced in accordance with the present invention possess enhanced affinities.

Such data includes comparisons between mice in accordance with the invention and the XenoMouse I strains, as well as consideration of the published results of GenPharm International and the MRC.

In connection with the XenoMouse I strains, as mentioned above, such mice possessed inefficient B- S 15 cell production and a limited response to different antigens. Such result appeared related in part to the limited V-gene repertoire. Similarly, results reported by GenPharm International and the MRC indicate a limited response to diverse antigens.

Without wishing to bound to any particular theory or mode of operation of the invention, it would appear that enhanced affinities appear to result from the provision of the large number of V 20 regions. From our data, the provision of greater numbers and/or selection of qualities of V-gene sequences, enhances junctional diversity (N-additions and formation of complementarity determining region 3 ("CDR3") diversity), which is typical of an adult-human-like immune response, and which play a substantial role in affinity maturation of antibodies. It may also be that such antibodies are more effective and efficient in somatic mutation events that lead to enhanced affinities. Each of junctional diversity and somatic mutation events are discussed in additional detail below.

With respect to affinities, antibody affinity rates and constants derived through utilization of plural VH and V, genes the use of 32 genes on the proximal region of the V, light chain genome and 66 genes on the VH portion of the genome) results in association rates (ka in of greater than about 0.50 X 10-, preferably greater than 2.00 X 10', and more preferably greater than about 20 4.00 X 106; dissociation rates (kd in of greater than about 1.00 X preferably greater than about 2.00 X 10 and more preferably greater than about 4.00 X 10- 4 and dissociation constant (in M) of greater than about 1.00 X 10-10, preferably greater than about 2.00 X 10-10, and more preferably greater than about 4.00 X 10-10.

Preferably, such mice additionally do not produce functional endogenous immunoglobulins.

This is accomplished in a preferred embodiment through the inactivation (or knocking out) of endogenous heavy and light chain loci. For example, in a preferred embodiment, the mouse heavy chain J-region and mouse kappa light chain J-region and C,-region are inactivated through utilization of homologous recombination vectors that replace or delete the region.

Variable Region B-cell Development B-cell development is reviewed in Klaus B Lymphocytes (IRL Press (1990)) and Chapters 1-3 of Immunoglobulin Genes (Academic Press Ltd. (1989)), the disclosures of which are hereby incorporated by reference. Generally, in mammals, blood cell development, including B- and T-cell lymphocytes, originate from a common pluripotent stem cell. The lymphocytes, then, evolve from a common lymphoid progenitor cell. Following an early gestational period, B-cell initiation shifts from the liver to the bone marrow where it remains throughout the life of the mammal.

In the life cycle of a B-cell, the first generally recognizable cell is a pro-pre-B-cell which is found in the bone marrow. Such a cell has begun heavy chain V-D-J rearrangement, but does not yet 20 make protein. The cell then evolves into a large, rapidly dividing, pre-B-cell I which is a cytoplasmically p' cell. This pre-B-cell I then stops dividing, shrinks, and undergoes light chain V-J rearrangement becoming a pre-B-cell II which expresses surface IgM, which leave the marrow as immature B-cells. Most of the emerging immature B-cells continue to develop and to produce surface IgD, indicative of their completion of differentiation and development as fully mature immunocompetent peripheral B-cells, which reside primarily in the spleen. However, it is possible to eliminate the delta constant region and still obtain immunocompetent cells.

B-cell differentiation and development can be monitored and/or tracked through the use of surface markers. For example, the B220 antigen is expressed in relative abundance on mature B-cells in comparison to pre-B-cells I or II. Thus, cells that are B220' and surface IgM' can be utilized -21 to determine the presence of mature B-cells. Additionally, cells can be screened for surface IgD expression Another antigen, heat stable antigen, is expressed by pre-B-cells II as they transition to the periphery as they become p" and/or TABLE n Bone Marrow Slee Marker pro-pre-B-cell pre-B-cell I re-B- immature B-cell mature B-cell emerging B-cell B220

-H+

S. HSA S" 15 Assuming the presence of a functional copy of the C6 gene on the transgene.

*Through use of B-cell markers, such as those mentioned above, development and differentiation of B-cells can be monitored and assessed.

20 We have previously demonstrated that DI mice (mice that do not undergo heavy chain V-D-J rearrangement or light chain V-J rearrangement) do not produce mature B-cells. In fact, such mice arrest at the production of pro-pre-B-cells and B-cells never move from the bone marrow to peripheral tissues, including the spleen. Thus, both B-cell development and antibody production are completely arrested. The same result is seen in mice that are only heavy chain inactivated; B-cell development and differentiation arrests in the bone marrow.

Our XenoMouse I strain produced functional, somewhat mature B-cells. However, the numbers of B-cells, in both the bone marrow and peripheral tissues, were significantly reduced relative to wild type mice.

In contrast, our XenoMouse II strains and L6 strains, unexpectedly possess almost complete B-cell reconstitution. Therefore, in accordance with the invention, we have demonstrated that -22through the quantitative inclusion or qualitative inclusion of variable region genes B-cell differentiation and development can be greatly reconstituted. Reconstitution of B-cell differentiation and development is indicative of immune system reconstitution. In general, B-cell reconstitution is compared to wild type controls. Thus, in preferred embodiments of the invention, populations of mice having inserted human variable regions possess greater than about 50% B-cell function when compared to populations of wild type mice.

Further, it is interesting to note that production of human antibodies in preference to mouse antibodies is substantially elevated in mice having a knock-out background of endogenous Ig. That is to say that mice that contain a human Ig locus and a functionally inactivated endogenous heavy chain Ig locus produce human antibodies at a rate of approximately 100 to 1000 fold as efficiently as mice that only contain a human Ig locus and are not inactivated for the endogenous locus.

Isotvpe Switching As is discussed in detail herein, as expected, XenoMouse II mice undergo efficient and effective isotype switching from the human transgene encoded mu isotype to the transgene encoded 0. gamma-2 isotype. We have also developed XenoMouse U strains that contain and encode the human gamma-4 constant region. As mentioned above, mice in accordance with the invention can additionally be equipped with other human constant regions for the generation of additional isotypes.

Such isotypes can include genes encoding y Y 3 a, c, 8, and other constant region encoding 20 genes. Alternative constant regions can be included on the same transgene, downstream from the human mu constant region, or, alternatively, such other constant regions can be included on another chromosome. It will be appreciated that where such other constant regions are included on the same chromosome as the chromosome including the human mu constant region encoding transgene, cis-switching to the other isotype or isotypes can be accomplished. On the other hand, where such other constant region is included on a different chromosome from the chromosome containing the mu constant region encoding transgene, trans-switching to the other isotype or isotypes can be accomplished. Such arrangement allows tremendous flexibility in the design and construction of mice for the generation of antibodies to a wide array of antigens.

It will be appreciated that constant regions have known switch and regulatory sequences that -23they are associated with. All of the murine and human constant region genes had been sequenced and published by 1989 See Honjo et al. "Constant Region Genes of the Immunoglobulin Heavy Chain and the Molecular Mechanism of Class Switching" in Immunoglobulin Genes (Honjo et al.

eds., Academic Press (1989)), the disclosure of which is hereby incorporated by reference. For example, in U.S. Patent Application Serial No. 07/574,748, the disclosure of which is hereby incorporated by reference, the cloning of the human gamma-1 constant region was prophesized based on known sequence information from the prior an. It was set forth that in the unrearranged, unswitched gene, the entire switch region was included in a sequence beginning less than 5 kb from the 5' end of the first y-1 constant exon. Therefore the switch region was also included in the 5' 5.3 kb HindIII fragment that was disclosed in Ellison et al. Nucleic Acids Res. 10:4071-4079 (1982).

Similarly, Takahashi et al. Cell 29:671-679 (1982) also reported that the fragment disclosed in Ellison contained the switch sequence, and this fragment together with the 7.7 kb HindIII to BamHI fragment must include all of the sequences necessary for the heavy chain isotype switching transgene construction.

Thus, it will be appreciated that any human constant region of choice can be readily incorporated into mice in accordance with the invention without undue experimentation. Such constant regions can be associated with their native switch sequences a human y, 2.3, constant region with a human switch, respectively) or can be associated with other switch sequences a human y, constant region with a human y, switch). Various 3' enhancer sequences can also 20 be utilized, such as mouse, human, or rat, to name a few. Similarly other regulatory sequences can also be included.

As an alternative to, and/or in addition to, isotype switching in vivo, B-cells can be screened for secretion of"chimeric" antibodies. For example, the L6 mice, in addition to producing fully human IgM antibodies, produce antibodies having fully human heavy chain V, D, J regions coupled to mouse constant regions, such as a variety of gammas mouse IgGI, 2, 3, 4) and the like. Such antibodies are highly useful in their own right. For example, human constant regions can be included on the antibodies through in vitro isotype switching techniques well known in the art. Alternatively, and/or in addition, fragments F(ab) and fragments) of such antibodies can be prepared which contain little or no mouse constant regions.

-24- As discussed above, the most critical factor to antibody production is specificity to a desired antigen or epitope on an -tigen. Class of the antibody, thereafter, becomes important accord;ng to the therapeutic need. In other words, will the therapeutic index of an antibody be enhanced by providing a particular isotype or class? Consideration of that question raises issues of complement fixation and the like, which then drives the selection of the particular class or isotype of antibody.

Gamma constant regions assist in affinity maturation of antibodies. However, the inclusion of a human gamma constant region on a transgene is not required to achieve such maturation. Rather, the process appears to proceed as well in connection with mouse gamma constant regions which are trans-switched onto the mu encoded transgene.

*o *MATERIALS AND METHODS The following Materials and Methods were utilized in connection with the generation and characterization of mice in accordance with the present invention. Such Materials and Methods are mmeant to be illustrative and are not limiting to the present invention.

Coning Human Il-derived YACs: The Washington University (Brownstein et al., 1989) and the CEPH (Abertsen et al., 1990) human-YAC libraries were screened for YACs containing sequences from the human heavy and kappa light chain loci as previously described (Mendez et al.

1995). Cloning and characterization of 1H and IK YACs was described by Mendez et al., (1995).

20 3H and 4H YACs were identified from the Washington University library using a V,,3 probe (0.55 kb Pstl/NcoI, Berman et al, 1988). The 17H YAC was cloned from the GM1416 YAC library and determined to contain 130 kb of heavy chain variable sequences and a 150 kb chimeric region at its 3' end Matsuda et. al., 1993. 2K and 3K YACs were recovered from the CHEF library using V,IIspecific primer (Albertsen et al., 1990).

YAC tarfering and recombination: Standard methods for yeast growth, mating, sporulation, and phenotype testing were employed (Sherman et al, 1986) Targeting of YAC's and YAC vector arms with yeast and mammalian selectable markers, to facilitate the screening of YAC recombinants in yeast of YAC integration into cells, was achieved by lithium acetate transformation (Scheistl and Geitz (1989). After every targeting or recombination step the modified YAC(s) was analyzed by pulsed field gel eletrophoresis an- standard Southern Blots to determine the integrity of all sequ-nces.

YAC targeting vectors were used for the interconversion of centric and acentric arms to reorient 17H and to retrofit its 5' arm with LEU2 and URA3 genes and its 3' arm with the HIS3 gene.

See Fig. la and Mendez et al, 1993. The 4H centric arm was retrofitted with the yeast ADE2 gene and the human HPRT selectable markers. For the first recombination step, a diploid yeast strain was created and selected in which all three YACs 17H, 3H, and 4H were present, intact, and stably maintained. A three-way homologous recombination between the YAC overlapping regions was induced by sporulation and the desired recombinant was found by the selection of the outer yeast selectable markers (ADE2 and HIS3) and negative selection (loss) of the internal marker URA3. The successful recombination created a 880 kb YAC containing 80% of the IgH variable region, starting at V.

2 -5 and extending 20 kb 5' of the VH 3 -65 gene. For the recombination of the 880 kb YAC to IH was retrofitted with pICL, which adds the LYS2 gene to the centric arm (Hermanson et al., 1991). Using standard yeast mating, a diploid strain was selected containing both 1H and the 880 kb YAC. Upon sporulation and by use of overlapping homology, YAC-yeast recombination was carried out. With positive selection for the outer yeast markers (ADE2 and URA3) and screening for the loss of the internal markers (TRP1, LYS2, HIS3), an intact 970 kb YAC consisting of approximately 66 VH segments, starting at V~6-1 and ending at V,3-65 was found. The YAC also contained the major D gene clusters, JH genes, the intronic enhancer Cp, up to 25 kb past C6, 20 in germline configuration. This 970 kb YAC was then retrofitted with a targeting vector including a 23 kb EcoRI genomic fragment of the human y-2 gene, including its switch and regulatory elements, a 7 kb XbaI fragment of the murine heavy chain 3' enhancer, neomycin gene driven by the metallothionine promoter (MMTNeo), and the yeast LYS2 gene. This vector, while bringing in these sequences on the 3' YAC arm, disrupts the URA3 gene.

As a first step toward creating yK2 YAC, by standard yeast mating a diploid yeast strain was selected in which retrofitted 1K and 3K YACs were both present, intact, and stably maintained.

Using the same process as described in connection with the IgH construction, YAC-yeast recombination was carried out. Through use of positive selection for the outer yeast markers (LYS2, TRPI) and the screening for the loss of internal markers (URA3, TRPI), an intact 800 kb -26recombinant product was found which contained 32 V, starting at and ending at The 800 kb YAC contains a deletion of approximately 100 kb starting at 3 and ending at However, the YAC is in germline configuration from to 100 kb past The YAC also contains the intronic and 3' enhancers, the constant and Kde.

YAC introduction into ES cells and mice: YAC-containing yeast spheroplasts were fused with E14.TG3B1 ES cells as described (Jakobovits et al., 1993a; Green et al., 1994). HAT-resistant colonies were expanded for analysis. YAC integrity was evaluated by Southern Blot analysis using protocols and prober described in Berman et al., (1988) and Mendez et al., (1994) and hybridization conditions as described in Gemmil et al., (1991). Chimeric mice were generated by microinjection ofES cells into C57BL/6 blastocysts. YAC-containing offspring were identified by PCR analysis of tail DNA as described (Green et al., 1994). YAC integrity was evaluated by Southern Blot analysis using probes and conditions previously described, except that the blot probed with human VH 3 was washed at 50 0

C.

Flow ctometrv analysi Peripheral blood and spleen lymphocytes obtained from 8-10 week old XenoMice and control mice were purified on Lympholyte M (Accurate) and treated with purified anti-mouse CD32/CD16 Fc receptor (Pharmingen, 01241D) to block non-specific binding to Fc receptors, stained with antibodies and analyzed on a FACStarL t Is (Becton Dickinson, CELLQuest 20 software). Antibodies used: allophycocyanin (APC) anti-B220 (Pharmingen, 01129A); biotin I anti-human IgM (Pharmingen, 08072D); biotin anti-mouse IgM (Pharmingen, 02202D); fluoroscein isothiocyanate (FITC) goat anti-human IgD (Southern Biotechnology, 2032-02);

FITC

anti-mouse IgD* (Pharmingen, 05064D); FITC anti-mIgDb (Pharmingen, 05074D); FITC anti-mouse (Pharmingen, 02174D); PE anti-human K (Pharmingen, 08175A); PE anti-mouse K (Pharmingen, 02155A.) RED613Th'-streptavidin (GibcoBRL, 19541-010) was used to detect biotinylated antibodies.

Immunization and hybridoma generation: XenoMice (8 to 10 weeks old) were immunized intraperitoneally with 25 pg of recombinant human IL-8 or with 5 pg TNF-a (Biosource -27- International) emulsified in complete Freund's adjuvant for the primary immunization and in incomplete Freund's adjuvant for the additional immunizations carried out at two week intervals. For EGFR immunization, XenoMice were immunized intraperitoneally with 2x107 A431 (ATCC CRL-7907) cells resuspended in phosphate buffered saline (PBS). This dose was repeated three times. Four days before fusion, the mice received a final injection of antigen or cells in PBS. Spleen and lymph node lymphocytes from immunized mice were fused with the non-secretory myeloma NSO-bcl2 line (Ray and Diamond, 1994), and were subjected to HAT selection as previously described (Galfre and Milstein, 1981).

ELISA aay: ELISA for determination of antigen-specific antibodies in mouse serum and in hybridoma supernatants were carried out as described (Coligan et al., 1994) using recombinant human IL-8 and TNF-a and affinity-purified EGFR from A431 cells (Sigma, E-3641) to capture the antibodies. The concentration of human and mouse immunoglobulins were determined using the following capture antibodies: rabbit anti-human IgG (Southern Biotechnology, 6145-01), goat anti-human IgK (Vector Laboratories, AI-3060), mouse anti-human IgM (CGI/ATCC, HB-57), for human y, K, and p Ig, respectively, and goat anti-mouse IgG (Caltag, M 30100), goat anti-mouse IgK (Southern Biotechnology, 1050-01), goat anti-mouse IgM (Southern Biotechnology, 1020-01), and goat anti-mouse A (Southern Biotechnology, 1060-01) to capture mouse y. K, p, and A Ig, respectively. The detection antibodies used in ELISA experiments were goat anti-mouse IgG-HRP 20 (Caltag, M-30107), goat anti-mouse IgK-HRP (Caltag, M 33007), mouse anti-human IgG2-HRP (Southern Biotechnology, 9070-05), mouse anti-human IgM-HRP (Southern Biotechnology, 9020-05), and goat anti-human kappa-biotin (Vector, BA-3060). Standards used for quantitation of human and mouse Ig were: human IgG, (Calbiochem, 400122), human IgMK (Cappel, 13000), human IgGK (Calbiochem, 400122), mouse IgGK (Cappel 55939), mouse IgMK (Sigma, M-3795), and mouse IgG 3 A (Sigma, M-9019).

Determination of affinit, constants of ully human Mabs by Icore Affinity measurement of purified human monoclonal antibodies, Fab fragments, or hybridoma supernatants by plasmon resonance was carried out using the BIAcore 2000 instrument, using general procedures -28outlined by the manufacturers.

Kinetic analysis of the antibodies was carried out using antigens immobilized onto the sensor surface at a low density: human IL-8 -81 RU, soluble EGFR purified from A431 cell membranes (Sigma, E-3641)- 303 RU, and TNF-a- 107 RU (1,000 RU correspond to about 1 ng/mm 2 of immobilized protein). The dissociation (kd) and association (ka) rates were determined using the software provided by the manufacturers, BIAevaluation 2.1.

Affinity measurement by radioimmunoassay: 'I-labeled human IL-8 (1.5 x 10*" M or 3 x 10'" M) was incubated with purified anti-IL-8 human antibodies at varying concentrations (5 x M to 4 x 10- 9 M) in 200 pl ofPBS with 0.5% BSA. After 15 hrs. incubation at room temperature, S" 20 pl ofProtein A Sepharose CL-4B in PBS v/v) was added to precipitate the antibody-antigen complex. After 2 hrs. incubation at 4 0 C, the antibody- 2 'I-IL-8 complex bound to Protein A Sepharose was separated from free 2sI-IL-8 by filtration using 96-well filtration plates (Millipore, Cat. No. MADVN65), collected into scintillation vials and counted. The concentration of bound and free antibodies was calculated and the binding affinity of the antibodies to the specific antigen was obtained using Scatchart analysis Receptor hinding assays: The IL-8 receptor binding assay was carried out with human *neutrophils prepared either from freshly drawn blood or from buffy coats as described (Lusti- 20 Marasimhan et al., 1995). Varying concentrations of antibodies were incubated with 0.23 nM 2 '1I]IL-8 (Amersham, IM-249) for 30 min at 4 t in 9 6-well Multiscreen filter plates (Millipore, MADV N6550) pretreated with PBS binding buffer containing 0.1% bovine serum albumin and 0.02% NaN at 250C for 2 hours. 4 X 10' neutrophils were added to each well, and the plates were incubated for 90 min at 4 0 C. Cells were washed 5 times with 200 pl of ice-cold PBS, which was removed by aspiration. The filters were air-dried, added to scintillation fluid, and counted in a scintillation counter. The percentage of specifically bound 2 "I]IL-8 was calculated as the mean cpm detected in the presence of antibody divided by cpm detected in the presence of buffer only.

Binding assays for TNF receptor were performed in a similar manner as the IL-8 assays described above. However, the human monocyte line U937 was utilized instead of the neutrophil line -29used in connection with the IL-8 assays. Antibodies were preincubated with 0.25 nM 2

]TNF

(Amersham, IM-206). 6 x 10' U937 cells were placed in each well.

The EGF receptor binding assay was carried out with A431 cells (0.4 x 106 cells per well) which were incubated with varying concentrations of antibodies in PBS binding buffer for 30 minutes at 4 0 C. 0.1 nM ['"I]EGF (Amersham, IM-196) was added to each well, and the plates were incubated for 90 min at 4 0 C. The plates were washed five times, air-dried and counted in a scintillation counter. Anti-EGFR mouse antibodies 225 and 528 (Calbiochem) were used as controls.

Repertoire analysis of human ly transcripts expressed in XenoMice and their derived human Mabs: Poly(A)' mRNA was isolated from spleen and lymph nodes of unimmunized and immunized XenoMice using a Fast-Track kit (Invitrogen). The generation of random primed cDNA was followed by PCR Human VH or human V, family specific variable region primers (Marks et. al., 1991) or a universal human primer, MG-30 (CAGGTGCAGCTGGAGCAGTCIGG) was used in conjunction with primers specific for the human Cp (hP2) or CK (hKP2) constant regions as previously described (Green et al., 1994), or the human y2 constant region 5'-GCTGAGGGAGTAGAGTCCTGAGGA-3'. PCR products were cloned into pCRII using a TA cloning kit (Invitrogen) and both strands were sequenced using Prism dye-terminator sequencing kits and an ABI 377 sequencing machine. Sequences of human Mabs-derived heavy and kappa chain transcripts were obtained by direct sequencing of PCR products generated from poly(A') RNA using 20 the primers described above. All sequences were analyzed by alignments to the "V BASE sequence directory" (Tomlinson et al., MRC Centre for Protein Engineering, Cambridge, UK) using MacVector and Geneworks software programs.

Preparation and purification of antibody Fh fragment: Antibody Fab fragments were produced by using immobilized papain (Pierce). The Fab fragments were purified with a two step chromatographic scheme: HiTrap (Bio-Rad) Protein A column to capture Fc fragments and any undigested antibody, followed by elution of the Fab fragments retained in the flow-through on strong cation exchange column (PerSeptive Biosystems), with a linear salt gradient to 0.5 M NaCl. Fab fragments were characterized by SDS-PAGE and MALDI-TOF MS under reducing and non-reducing conditions, demonstrating the expected -50 kD unreduced fragment and -25 kDa reduced doublet.

This result demonstrates the intact light chain and the cleaved heavy chain. MS u-,ter reducing conditions permitted the unambiguous identification of both the light and cleaved heavy chains since the light chain mass can be precisely determined by reducing the whole undigested antibody.

EXAMPLES

The following examples, including the experiments conducted and results achieved are provided for illustrative purposes only and are not to be construed as limiting upon the present invention.

Example 1: Reconstruction of human heavy chain loci on YACs In accordance with the present invention, the strategy that we utilized to reconstruct the human heavy chain and human kappa light chain variable regions was to, first, screen human-YAC libraries for YACs that spanned the large (megabase-sized) human Ig loci and, second, to recombine YACs spanning such regions into single YACs containing the desired loci predominantly in germline configuration.

The above, stepwise, YAC recombination scheme exploited the high frequency of meiotic-induced homologous recombination in yeast and the ability to select the desired recombinants by the yeast markers present on the vector arms of the recombined YACs (See Figure 1, and Green 20 et al., supra.; see also Silverman et al., 1990 and denDunnen et al., 1992).

In connection with our strategy, we identified four YACs, 1H (240 kb), 2H (270 kb), 3H (300 kb), and 4H (340 kb), which spanned about 830 kb, out of the about 1000 kb, of the human heavy chain variable region on chromosome 14q. YACs 1H, 2H, 3H, and 4H were used for reconstruction of the locus (See Figure 1A). Pulsed Field Gel Electrophoresis (PFGE) and Southern blot analysis confirmed the YACs to be in intact, germline configuration, with the exception of 150 kb at the 3' end of YAC 2H which contained certain non-IgH sequences (See Figure 1; Matsuda et al., 1990). YAC IH, the YAC that was previously introduced into our first generation XenoMouse™M (Green et al., supra.; Mendez et al., 1995), is comprised of the human C6, J, and DH regions and the first 5 V, genes in germline configuration. The other three YACs cover the majority of the VH region, from -31

VH

2 -5 to VH3-65, thus contributing approximately an additional 61 different genes. Prior to recombination, YAC 4H -as retrofitted with an HPRT selectable marker. Through utilization of the overlapping sequences contained on the YACs, the four YACs (1H, 2H, 3H, and 4H) were recombined in yeast by a stepwise recombination strategy (See Figure 1A). Such recombination strategy generated a 980 kb recombinant YAC (See Figure Analysis of the YAC by PFGE and Southern blot analysis confirmed the presence of the human heavy chain locus from the C, region to kb 5' of the VH3-65 gene in gernline configuration. No apparent deletions or rearrangements were observed.

The YAC acentric arm was targeted with a vector bearing the complete human y2 constant region, mouse 3' enhancer, and the neomycin resistance gene, to yield the final 1020 kb heavy chain YAC, yH2. YAC yH2 contained the majority of the human variable region 66 out of the 82 VH genes, complete DH (32 genes), and JH (6 genes) regions and three different constant regions (Cp, C6, and Cy) with their corresponding regulatory sequences (See Figure 1A). This was the heavy chain construct utilized for the production of our XenoMouse II strains.

Eample 2: Reconstruction of human kappa light chain loci on YACs A similar stepwise recombination strategy was utilized for reconstruction of the human kappa light chain locus. Three YACs were identified that spanned the human kappa loci. The YACs were designated 1K, 2K and 3K. YAC 1K, which had a length of approximately 180 kb, had previously 20 been introduced into our first generation XenoMouseTM. Such YAC contained the kappa deleting element, (Kde), the kappa 3' and intronic enhancers, J, and the three V, genes on the B cluster (Green et al., 1994; Mendez et al., 1995). YAC 2K (approximately 480 kb), and 3K (approximately 380 kb) together encompass most of the kappa chain proximal variable region on chromosome 2p.

A deletion of approximately 100 kb spans the L13-L5 region (Fig. IB; Huber et al., 1993). Inasmuch as the kappa distal region duplicates the proximal region, and as the proximal V, genes are the ones most commonly utilized humans (Weichold et al., 1993; Cox et al., 1994), the proximal region was the focus of our reconstruction strategy (Fig.. 1B). Through homologous recombination of the three YACS, an 800 kb recombinant YAC, yK2, was recovered. The size and integrity of the recombinant YAC was confirmed by PFGE and Southern blot analysis. Such analysis demonstrated that it covered -32the proximal part of the human kappa chain locus, with 32 VK genes in germline configuration except for the described deletion in the Lp region (Fig. 1B). yK2 centric and acentric arms were modified to contain the HPRT and neomycin selectable markers, respectively, as described (Materials and Methods). This was the kappa light chain construct utilized for the production of our XenoMouse II strains.

The YACs described herein, yH2 and yK2, represent the first megabase-sized reconstructed human Ig loci to contain the majority of the human antibody repertoire, predominantly in germline configuration. This accomplishment further confirmed homologous recombination in yeast as a powerful approach for successful reconstruction of large, complex, and unstable loci. The selection of stable YAC recombinants containing large portions of the Ig loci in yeast provided us with the human Ig fragments required to equip the mice with the human antibody repertoire, constant regions, and regulatory elements needed to reproduce human antibody response in mice.

Example 3: Introduction ofvH2 and vK2 YACs into ES cells In accordance with our strategy, we introduced the YACs, yH2 and yK2, into mouse S embryonic stem (ES) cells. Once ES cells containing the YAC DNA were isolated, such ES cells were utilized for the generation of mice through appropriate breeding.

In this experiment, therefore, YACs yH2 and yK2, were introduced into ES cells via fusion of YAC-containing yeast spheroplasts with HPRT-deficient E14.TG3B mouse ES cells as previously 2: 0 described (Jakobovits et al., 1993a; Green et al., 1994). HPRT-positive ES cell clones were selected at a frequency of 1 clone/15-20x 106 fused cells and were analyzed for YAC integrity by Southern and S CHEF blot analyses (Figs. 2A-2E).

Seven of thirty-five ES cell clones (referred to as L10, J9.2, L17, L18, J17, L22, L23) derived from ES cell fusion with yH2-containing yeast were found to contain all expected EcoRI and BamHI yH2 fragments detected by probes spanning the entire insert: mouse 3' enhancer, human intronic enhancer, human C 2, C 6 and C constant regions, DH, JH and all the different VH families: VH1, VH 2

VH

3

VH

4 V,5, and VH 6 (data shown for 5 clones in Figs. 2A-2E). CHEF analysis further confirmed that these clones, which represent 20% of all clones analyzed, contain the entire intact yH2 YAC with no apparent deletions or rearrangements (data not shown).

-33 ES cell clones derived from the fusion of yK2-containing yeast were similarly analyzed for YAC integrity, using probes specific for the human Kde, kappa 3' and intronic enhancers, CK, JH, and all of the different VK families: VKI, VKII, VKIII, VKIV, VKVI. Twenty clones of the sixty clones had intact and unaltered YAC, which represent 30% of total clones analyzed (data shown for two ES clones in Figs. 3A-3E). Varying amounts of yeast genomic sequences were detected in yH2 and yK2- ES cell clones (data not shown).

These results are the first demonstration of introduction of megabase-sized constructs encompassing reconstructed human loci, predominantly in germline configuration, into mammalian cells. The relatively high frequency of intact YACs integrated into the mouse genome further validated the ES cell-yeast spheroplast fusion methodology as an effective approach for faithful introduction of large human genomic fragments into ES cells.

Example 4: Generation ofXenoMouse II strains In order to generate mice from the YAC DNA containing ES cells, microinjection of 15 blastocysts was conducted, followed by breeding. Thus, yH2- and yK2-bearing ES cell clones were S expanded and microinjected into mouse C57BL/6J blastocysts (Green et al., 1994) and the chimeric males produced were evaluated for germline transmission. Offspring with transmitted YAC were identified by PCR analysis and the YAC integrity was confirmed by Southern blot analysis. In all transgenic mice analyzed the YAC was shown to be in intact form (Figs. 2F-2I, 3F-3I). All seven ":20 microinjected yH2-ES clones and two out of eight yK2-ES clones were transmitted through the mouse germline.

In order to generate mice that produced human antibodies to the exclusion of endogenous antibodies, yH2- or yK2-transgenic mice were bred with double-inactivated (DI) mouse strains. The DI mouse strains are homozygous for gene targeted-inactivated mouse heavy and kappa chain loci and thus are deficient in antibody production (Jakobovits et al., 1993b; Green et al., 1994). Two of the yH2- transgenic mouse strains L10 and J9.2, and one of the yK2-transgenic mouse strains, J23.1, were bred with DI mice to generate mice bearing YACs on an homozygous inactivated mouse heavy and kappa chain background (yH2;DI, and yK2;DI). Each of the yH2;DI transgenic strains were bred with the yK2;DI transgenic strain to generate two XenoMouse II strains, 2A-1 (L10; J23.1;DI) and -34- 2A-2 (J9.2;J23.1 respectively, containing both heavy and light chain YACs on homozygous

DI

background. L10 is fully homozygous and J9.2 and J23.1 are in the process of being successfully bred to homozygosity.

The integrity of the human heavy and kappa chain YACs in XenoMouse II strains was confirmed by Southern blot analysis. As shown in Fig. 2 and Fig. 3, in both XenoMouse strains analyzed, yH2 and yK2 were transmitted unaltered through multiple generations with no apparent deletions or rearrangements.

Example 5: -cell develoment and human antibody roduction by XenoMouse mice In order to further characterize the XenoMouse II strains, we studied their B-cell development and their production of human antibodies. Reconstitution of B-cell development and antibody S production in XenoMouse II strains by yH2 and yK2 YACs was evaluated by flow cytometry and ELISA. In contrast to DI mice, which completely lack mature B-cells, XenoMouse II manifested essentially normal B-cell development with the mature B-cell population in the blood totaling over 50% of the level seen in wild type race (Figs. 4A-4H). All B-cells were shown to express human IgM and high levels ofB220 (human IgM'/B220"), with 60% of this population also expressing human IgD. Similar results were obtained from analysis of XenoMouse spleen and lymph nodes (not shown).

These results correlate well with the characteristics of mature B-cells in wild type mice, indicating proper B-cell maturation in XenoMouse.

The majority of XenoMouse B-cells (75-80%) expressed exclusively human kappa (K)light chain, whereas only about 15% expressed mouse lambda light chain (Fig. This light chain S distribution ratio (hK/mrl 75:15) is comparable to that observed in wild type mice, indicating a mouse-like regulation of light chain utilization. In contrast, XenoMouse I, as described in Green et al., 1994, showed a ratio of hK/m 55:45 (data not shown). Similar observations were made for Bcells from spleen (Figs. 4I-4T) and lymph nodes (not shown), indicating that most of XenoMouse II's B-cells produced exclusively fully human antibodies. Levels of mA-expressing B-cells were reduced from 15% to 7% in XenoMouse II strains homozygous for yK2 (data not shown).

Example 6 Generation of L6 Strain The L6 strain of mice were generated identically to the process described above in connection with the generation of the XenoMouse II strains. However, owing to a deletion event during the generation of the L6 ES cell line, the ES cell line, and, subsequently, the L6 mouse evolved without a portion of the sequence distal to C8, thus, eliminating the Cy constant region and its regulatory sequences. Following completion of breeding, the L6 mice will contain the entire yK2 construct and the entire yH2 construct, except for the missing Cy constant region.

Example 7: Human Antibody Production Expression of human Cu, Cy2, and K light chains were detected in unimmunized XenoMouse II sera at maximal levels of 700, 600, and 800 gg/ml, respectively. To determine how these values compared to wild-type, we measured maximal levels of mouse CA, Cy2, and K light chains in C57BL/6J x 129 mice kept under similar pathogen-free conditions. The values for Cp, Cy2, and K light chain in wild-type mice were 400, 2000, and 2000 gg/ml, respectively. Upon immunization, the human y chain levels increased to approximately 2.5 mg/ml. The concentration of mouse A was only 70 pg/ml, further confirming the preferential use of human kappa chain.

These findings confirmed the ability of the introduced human Ig YACs to induce proper Ig gene rearrangement and class switching and to generate significant levels of fully human IgM and IgG antibodies before and after immunization.

FExample 8: A diverse human antibody repertoire in XenoMouse

II

In order to further understand the reconstitution of the antibody repertoire in XenoMouse

II

strains, we challenged mice with several antigens, and prepared hybridoma cell lines secreting such antibodies. As will be understood, recapitulation of the human antibody response in mice requires diverse utilization of the different human variable genes contained on yH2 and yK2 YACs. The diversity of the human antibodies generated by XenoMouse II strains was determined by cloning and sequencing human heavy chain (u and y) and kappa light chain transcripts from XenoMouse lymph nodes. Based upon our data to date, sequence analysis demonstrates that XenoMouse II utilizes at -36least 11 out of the 37 functional V, genes present on yH2, eight different DH segments and three J,, genes JH4, JH6) (Table III; JH, was also detected in connection with our sequencing antibodies from hybridomas). V-D-J sequences were linked to human p or y2 constant regions (not shown).

The VH genes utilized are widely distributed over the entire variable region and represent four out of the seven V, families (Table III). The predominant utilization of V genes from VH and VH, families is similar to the VH usage pattern in adult humans, which is proportional to family size (Yamada et al. 1991; Brezinshek et al., 1995). The predominant usage of J 1 is also reminiscent of that detected in human B-cells (Brezinshek et al., 1995). Addition of non-germline nucleotides (N-additions) at both V-D and D-J joinings, ranging from 1-12 bp, were also observed. Such Nadditions produced complementary determining regions 3 (CDR3s) with lengths of from 8 to about 19 amino acid residues, which is very comparable to that observed in adults human B-cells (Yamada et al. 1991; Brezinshek et al., 1995). Such CDR3 lengths observed in the XenoMouse II are much longer than CDR3 lengths ordinarily observed in mice (Feeny, 1990).

A highly diverse repertoire was also found in the ten kappa chain transcripts sequenced. In addition to displaying 8 out of the 25 VK functional open reading frames (ORFs) present on yK2, all of the JK genes were detectable (Table IV). The different VK genes utilized were widely dispersed throughout yK2, representing all four major VK gene families. All VKJK recombination products were linked properly to CK sequences. The paucity of N-additions in our transcripts is in agreement with the greatly reduced terminal deoxynucleotide transferase activity at the stage of kappa chain 20 rearrangement. The average CDR3 length of 9-10 amino acids that we observed in the kappa chain transcripts is identical to that observed in human B-cells (Marks et al., 1991) In Tables III and IV below, repertoire analyses of human heavy and kappa light chain transcripts expressed in XenoMouse II strains are presented. Human p, y, and K specific mRNAs were amplified by PCR, cloned and analyzed by sequencing as described in Materials and Methods.

Table III shows a series of nucleotide sequences of 12 unique human heavy chain clones, divided into VH, D, JH and N segments, as identified by homology with published germline sequences (Materials and Methods). Each D segment assignment is based on at least 8 bases of homology. Table IV shows a series of nucleotide sequences of V-J junctions of 8 independent human K clones. The sequences are divided into V, J, and N segments and identified based on homology to published

V,

-37- 6 6 s Otto

S

and sequences. in each of the Tables N-additions and deletions (indicated as _9 were determined by their lack of sequence homology to V, D, or J sequences.

TABLEJII

Repertoire Analysis of Human Heavv Chain Transcripts Clon V. N 3 3 A2.2.1 5-51 (DP73) 4 XP~rc 12 1114 GACTACTOGGC 7ACTOTGCOAGACA T (TAGG) AATCAT

(GGGAGCTACGGG)

B2.15 5 3-33 (DP-SO) 7 3rc 7 JH4 _C1TIGACTACTOGGGC TTACTGTGCGAGA (TCGGGGA) AATAGCA

(CTGGCCT)

84.2.4 3-15 (DP-38) IKR I I JH6__CTACTACTACTAC~GGT TTACTGTACCACAGA GGCTAC

(ACTAACTACCC)

84.2.5 4-59 (DP-7R1 2 4 6 iH6_A TCAT

CAC

TTACTUTGCGAOAGA (TOAGTGTr) UATCAGCTGCTAT

(CCA

D2.2.5 4-34 (PP-63) 2 NJ 4 31-14 _C7-ITGACTACTGGUGC rrACTGTGCGAGAG (GG) GCAGCAGCTG

(CCCT)

D2.1.3 3-49 (OP-SI1) 4 XPJ 2 3116__CTACTACTACTACGGT TrACTGTGCGAGAGA (TCr CATATmUATGGT

(CT)

D2.2.8 4.31 (DP-65) 2 A4 5 1114 _TTTGACTACTGUGGC TTACTOTGCGAGAGAJ (GA) GACTOCAG

(CGGTT)

A2.2.4 3.21 (DP-77) 2 1R3 3 JH6-TACTACTACTACTACGGCT TTACTOGCGAGAGA (17) GGUCTOG

(ACC)

D4.2.11 4"44.35 1 NJ 2 3114 __CTTTGACTACTGGC AT7ACTGTGCGA TATAGCAGTUOCTGGT

(GT)

C1.2.1 I' 19(DP- 14) 0 X7R1.17 0 3114 _____ACTACTGGGCC TATTACTGTGCGAG

GTTA

C3.1.2 4-.39 (DP-79) 3 2 6 3114 __CTTTGPCACTUC3GC TATTACTGTGCG (OCC) =TAATAGTGO

TGUC

2.2.7 55 (P73) 4 KR 9 H3 ATUCT rGATATGOGGG TTACTrGTfGCG-A (TOOC) .ATGc

(GGTACTCT

38 10 TABLE1 Repertoire Analysis of-Human Kappa Light Chain Trans-cript Coevi: N J1C F2.2.3 02 (DPK9) 0 R5 GATCACCTrCGOCCA

TTAAACGAACAGTACCCC_

F4.1. 8 L5 (DPKS) 0 I'd _GGACGTTCGGCCAA ACAGGCTA~cAofl7cc F4. 1.6 A20 (DPK4) 0 JO AITCAC7TTCGCCCT AAGTATAACAGTGcccc__ F2.2.5 08 0J4GTA~TGCO ACAGTATGATATcCCCGTA-TC3C F2 L4 AA2.1.5TAGTACC 0 3d5 GATCACCTFCGGCC,1 P224 C~AAGATAATAGTACCC 3 _ccI~cc- F2.1.3 B3 (DPK24)0k4GTArCGGA AATA7TATAGTACcjcCCTATCcA LF4 13 A27 (DPK22) I 3:2 __CACTIrGCCAG ICAGTATGOsTAGCTCACCc (0) These results, together with sequences of XenoMouse-derived hybridomas described later, demonstrate a highly diverse, adult human-like utilization of V, D, and J genes, which appears to demonstrate that the entire human heavy and kappa chain variable regions present on the yH2 and the yK2 YACs are accessible to the mouse system for antibody rearrangement and are being utilized in a non-position-biased manner. In addition, the average length of N-additions and CDR3s for both 20 the heavy and kappa chain transcripts, is very similar to that seen in adult human B-cells, indicating that the YAC DNA contained in the mice direct the mouse machinery to produce an adult human-like immune repertoire in mice.

In connection with the following Examples, we prepared high affinity antibodies to several antigens. In particular, antigens were prepared to human IL-8 and human EGFR. The rationale for the selection of IL-8 and EGFR is as follows.

EL-8 is a member of the C-X-C chemokine family. IL-8 acts as the primary chemoattractant for neutrophils implicated. in many diseases, including A.RDS, rheumatoid arthritis, inflammatory bowel disease, glomerulonephritis, psoriasis, alcoholic hepatitis, reperfizsion injury, to name a few.

39 Moreover, IL-8 is a potent angiogenic factor for endothelial cells. In Figures 22-28, we demonstrate that human anti-IL-8 ant" -dies derived from XenoMouse II strains are effective in a inhibiting IL-8's actions in a number of pathways. For example, Figure 22 shows blockage of IL-8 binding to human neutrophils by human anti-IL-8. Figure 23 shows inhibition of CDllb expression on human neutrophils by human anti-IL-8. Figure 24 shows inhibition of IL-8 induced calcium influx by human anti-IL-8 antibodies. Figure 25 shows inhibition of IL-8 RB/293 chemotaxsis by human anti-IL-8 antibodies. Figure 26 is a schematic diagram of a rabbit model of human IL-8 induced skin inflammation. Figure 27 shows the inhibition of human IL-8 induced skin inflammation in the rabbit model of Figure 26 with human anti-IL-8 antibodies. Figure 28 shows inhibition ofangiogenesis of endothelial cells on a rat corneal pocket model by human anti-IL-8 antibodies.

EGFR is viewed as an anti-cancer target. For example, EGFR is overexpressed, up to 100 fold, on a variety of cancer cells. Ligand (EGF and TNF) mediated growth stimulation plays a critical role in the initiation and progression of certain tumors. In this regard, EGFR antibodies inhibit ligand binding and lead to the arrest of tumor cell growth, and, in conjunction with chemotherapeutic agents, induces apoptosis. Indeed, it has been demonstrated that a combination of EGFR Mabs resulted in S* tumor eradication in murine xenogeneic tumor models. Imclone has conducted Phase I clinical utilizing a chimeric Mab (C225) that proved to be safe. In Figures 31-33, we demonstrate data related to our human anti-EGFR antibodies. Figure 30 shows heavy chain amino acid sequences of human anti-EGFR antibodies derived from XenoMouse II strains. Figure 31 shows blockage EGF 20 binding to A431 cells by human anti-EGFR antibodies. Figure 32 shows inhibition of EGF binding to SW948 cells by human anti-EGFR antibodies. Figure 33 shows that human anti-EGFR antibodies derived from XenoMouse II strains inhibit growth of SW948 cells in vitro.

Example 9: Hih affinity antien-speciic human Mabs nroduced by XenoMouse

II

We next asked whether the demonstrated utilization of the large human repertoire in XenoMouse II could be harnessed to generate human antibodies to multiple antigens, in particular, human antigens of significant clinical interest.

Accordingly, individual XenoMouse II pups were challenged each with one of three different antigen targets, human IL-8, human EGFR and human TNF-a. Antigens were administered in two different forms, either as soluble protein, in the case of IL-8 and TNF-a or expressed on the surface of cells (A431 cells), in ^e case of EGFR. For all three antigens, ELISAs performed on sera from immunized mice indicated a strong antigen-specific human antibody (IgG, IgK) response with titers as high as 1:3xl06. Negligible mouse A response was detected.

Hybridomas were derived from spleen or lymph node tissues by standard hybridoma technology and were screened for secretion of antigen-specific human Mabs by ELISA.

An IL-8 immunized XenoMouse II yielded a panel of 12 hybridomas, all secreting fully human (hlgG,K) Mabs specific to human IL-8. Antibodies from four of these hybridomas, D 1.1, K2.2, K4.2, and K4.3, were purified from ascitic fluid and evaluated for their affinity for human IL-8 and their potency in blocking binding of IL-8 to its receptors on human neutrophils.

Affinity measurements were performed by solid phase measurements of both whole antibody and Fab fragments using surface plasmon resonance in BIAcore and in solution by radioimmunoassay (Materials and Methods). As shown in Table V, affinity values measured for the four Mabs ranged from l.lxl09 to 4.8x10' 0 While there was some variation in the techniques employed, affinity values for all four antibodies were consistently higher than 109 M'.

ELISA analysis confirmed that these four antibodies were specific to human IL-8 and did not cross-react with the closely related chemokines MIP-la, GROa, P, and y, ENA-78, MCP-I, or RANTES (data not shown). Further, competition analysis on the BIAcore indicated that the antibodies recognize at least two different epitopes (data not shown). All antibodies inhibit IL-8 20 binding to human neutrophils as effectively as the murine anti-human IL-8 neutralizing antibody, whereas a control human IgGK antibody did not (Fig. Fusion experiments with EGFR-immunized Xenomouse II yielded a panel of 25 hybridomas, all secreting EGFR-specific human IgG,K Mabs. Of the thirteen human Mabs analyzed, four (E2.1, E2.4, E2.5, E2.11) were selected for their ability to compete with EGFR-specific mouse antibody 225, which has previously been shown to inhibit EGF-mediated cell proliferation and tumor formation in mice (Sato et al., 1983). These human antibodies, purified from ascitic fluid, were evaluated for their affinity for EGFR and neutralization of EGF binding to cells. The affinities of these antibodies for EGFR, as determined by BIAcore measurements, ranged from 2.9xl09 to 2.9x10'0 M (Table V).

All four anti-EGFR antibodies completely blocked EGF binding to A431 cells (Fig. -41 demonstrating their ability to neutralize its binding to both high and low affinity receptors on these cells (Kawamoto et al., 1983). Complete inhibition of EGF binding to EGFR expressed on h'-man SW948 human lung carcinoma cells by all four anti-EGFR human antibodies was also observed (data not shown). In both cases, the fully human antibodies were as effective in inhibition of EGF binding as the ar.: EGFR mouse antibody 225 and more potent than the 528 antibody (Gill et al., 1983). In both cell assays, a control human IgG,K antibody did not affect EGF binding (Fig. 5B and data not shown).

Fusion experiments with TNF-a immunized Xenomouse I yielded a panel of 12 human IgG 2

K

antibodies. Four out of the 12 were selected for their ability to block the binding of TNF-a to its receptors on U937 cells (Fig. 5C). The affinities of these antibodies were determined to be in the range of 1.

2 -3.9x]0 9 M4 (Table V).

The described Xenomouse-derived hybridomas produced antibodies at concentrations in the range of2-19 ug/ml in static culture conditions. Characterization of the purified antibodies on protein gels under non-reducing conditions revealed the expected apparent molecular weight of 150 kD for the IgGK antibody. Under reducing conditions the expected apparent molecular weights of 50 kD for the heavy and 25 kD for the light chain were detected (data not shown).

Table V, below, shows affinity constants ofXenoMouse-derived antigen-specific fully human Mabs. The affinity constants ofXenoMouse-derived human IgG,K Mabs specific to IL-8, EGFR, and TNF-a were determined by BIAcore or by radioimmunoassay as described in Materials and Methods.

S 20 The values shown for IL-8 and EGFR are representative of independent experiments carried out with purified antibodies, while the values shown for TNF-a are from experiments carried out with hybridoma supernatants.

42- TABLE V a a Human ISuxfacc Imuosa Mab Antigen ka K M' KDMenivM.

rRUl Solid Phase Measurements j Solution DI EL-8 2.7 x 10' 9.9 x I0' 2.7 x 10' 3.7 x 10*1 81 2.0 x 10'0 DI.I Fab IL-8 2.1 x 10' 2.1 x 10" 1. 1 x 10' 8.8 x 103 81 4.9 x 10"1 K2.2 IL-8 0.9 x 10' 2.3 x10' 4.0 x10' 2.5 x 10'1 81 l.0x 1030 K4.2 IL-8 2.5Sx 10' 4.1 x 10-' 6.3 x 10' 1.6 x 10"1 81 ND K4.3 EL-8 4.3 x 10' 9.4 x 10*4 4.5 x 10' 2.2 x 1030 81 2.1 x 1011 K4.3 Fab IL-8 6.0Ox 10' 2.1 x 10-1 2.9 x 10' 3.4 x 10' 81 ELISA (M) 15 El. I EGFR l.9 x 10' 6.xQ4 2.9 x 109 3.46 x 10'3 303 1.1 x 1030 EGFR 2.1 x 10' 1.8 x 10' 1.2 x 1010 8.44 x 10" 303 3.6 x E2.11I EGFR 1.7 x 10' 4.7 x 10' 3.7 x 10' 2.68 x 10'3 303 1.1 x 101 E2 4 EGFR 2.8 x 106 9.78 x 10'5 2.9 x 1010 3.5 x 10,1 818 1.1 x 103 20 T22.1 TNF-z 1.6 x 10 1.3 x 10"' 1.2 x 109 8.06 x 10.30 107 T22 4 TNF-cx 2 4 x 10' 4.6 x 10'd S.3 x 10' 1.89 x 1030 107 T22.8 TNF-a 1 7 x 10' 7.5 x 10' 2.3 x 10' 4.3 x 10*10 107 T22.9 TNF-a 2.3 x 10' 4.9 x 10~' 4 8 x 10' 2.11 x 1030 107 T22.1 I TNF-a 12.9 x 10' 7 .9 x 10-4 N/A 2 .76 x 103 107 ExaMple 10: Gene usag~e and somatc hye utt in monocloalntode The sequences of the heavy and kappa light chain transcripts from the described IL-8 and EGFR-human Mabs were determnined Figure 6 and Figures The four IL-8-specific antibodies consisted of at least three different VH genes (VH 4 34

/VH

4 2 1, VH3 30 and VHSS) four different D H segments (A1/A4, KI, ir3rc, and 21-10rc) and two Ji. (JH3 and JI 14 gene segments. Three different VK genes (012, 018, and B3) combined with 1K3 and JK4 genes. Such diverse utilization shows that 43 Xenomouse II is capable of producing a panel of anti-IL-8 neutralizing antibodies with diverse variable regions.

In contrast to the IL-8 antibody transcripts, the sequences of antibodies selected for their ability to compete with Mab 225 showed relatively restricted VH and VK gene usage, with three antibodies, El. 1, E2.4 and E2.5 sharing the same VH gene (4-3 1) and E2.11 containing which is highly homologous to VH.

31 Different D AI/A4, XP1) and Ja (JH3, J 1 4 J,5) segments were detected. Al l four antibodies were shown to share the same VK (018) gene. Three of them contained JK4, and one, E2.5, contained Jri2.

Most VH and VK hybridoma transcripts showed extensive nucleotide changes (7-17) from the corresponding germline segments, whereas no mutations were detected in the constant regions. Most of the mutations in V segments resulted in amino acid substitutions in the predicted antibody amino S. acid sequences (0-12 per V gene), many in CDRI and CDR2 regions (Figure J. Of note are the mutations which are shared by the heavy chain sequences of EGFR antibodies, such as the Gly-Asp substitution in CDRI, shared by all antibodies, or Ser-Asn substitution in CDR2 and Val-Leu in the framework region 3 shared by three antibodies. These results indicated that an extensive process of somatic hypermutation, leading to antibody maturation and selection, is occurring in Xenomouse

II.

Discussion This present application describes the first functional substitution of complex, megabase-sized mouse loci, with human DNA fragments equivalent in size and content reconstructed on YACs. With this approach, the mouse humoral immune system was "humanized" with megabase-sized human Ig loci to substantially reproduce the human antibody response in mice deficient in endogenous antibody production.

Our success in faithful reconstruction of a large portion of the human heavy and kappa light chain loci, nearly in germline configuration, establishes YAC recombination in yeast as a powerful technology to reconstitute large, complex and unstable fragments, such as the Ig loci (Mendez et al., 1995), and manipulate them for introduction into mammalian cells. Furthermore, the successful introduction of the two large heavy and kappa light chain segments into the mouse germline in intact form confirms the methodology ofES cell-yeast spheroplast fusion as a reliable and efficient approach -44to delivering xenogeneic loci into the mouse germline.

Characterization ofXenomouse II strains has shown that the large Ig loci were capable of restoring the antibody system, comparable in its diversity and functionality to that of wildtype mice, and much superior to the humoral response produced in mice bearing human Ig minigene constructs (Lonberg et al., 1994) or small human Ig YACs (Green et al., 1994). This difference was manifested in the levels of mature B-cells, human Ig production, class switching efficiency, diversity, preponderance of human IgK over murine Ig. production, and magnitude of the human antibody response, and success in the generation of high affinity, antigen-specific monoclonal antibodies to multiple antigens.

The levels of mature B-cells and human antibodies in Xenomouse II are the highest yet reported for Ig-transgenic mice, representing a several-fold increase over the levels shown for previous mice and approaching those of wildtype mice. In particular, the levels of the human IgG were more than 100 fold higher than those reported for mice bearing minilocus Ig transgenes with human y 1 gene (Lonberg et al., 1994). The more efficient class switching in Xenomouse II was likely the result of the inclusion of the entire switch regions, with all of their regulatory elements, as well as the additional control elements on yH2, which may be important to support and maintain proper class switching. The elevated levels of mature B-cells in Xenomouse II strains are likely to result from the higher rearrangement frequency and thus improved B-cell development in the bone marrow due to the increased V gene repertoire. B-cell reconstitution is expected to be even more pronounced 20 in XenoMouse II strains that are homozygous for the human heavy chain locus.

The ratio of human K to mouse A light chain expression by circulating B-cells provides a useful internal measure of the utilization of the transgenic kappa chain locus. Whereas in mice containing one allele of smaller Ig YACs, an approximately equal distribution of human K and mouse was observed, a significant preponderance of human K was detected in Xenomouse II strains.

Moreover, in animals homozygous for yK2 possessed a K:A ratio that is identical to wild type mice.

These observations together with the broad VK gene usage strongly suggest that the human proximal VK genes in the Xenomouse II are sufficient to support a diverse light chain response and are consistent with the bias toward proximal VK gene usage in humans (Cox et al., 1994).

Xenomouse II strains exhibited highly increased antibody diversity with V, D, and J genes across the entire span of the loci accessed by the recombination mechanism and incorporated into mature antibodies. Once triggered by antigen binding, extensive somatic hypermutation occurs, leading to affinity maturation of the antibodies.

The utilization pattern ofV, D, J genes in Xenomouse II also indicated they are available and utilized in a manner reminiscent of their utilization in humans, yielding an adult-like human antibody repertoire, which is different from the fetal-like, position-biased usage observed in Ig minigene-bearing mice (Taylor et al., 1992; Taylor et al., 1994; Tuaillon et al., 1993). The broad utilization of many of the functional V, and VK genes together with the multiplicity of antigens recognized by the mice underscores the importance of the large V gene repertoire to successfully reconstituting a functional antibody response.

The ultimate test for the extent of reconstitution of the human immune response in mice is the spectrum of antigens to which the mice will elicit an antibody response and the ease with which antigen-specific high affinity Mabs can be generated to different antigens. Unlike mice engineered with smaller human Ig YACs or minigenes, which yielded to date only a limited number of antigen-specific human Mabs (Lonberg et al., 1994; Green et al., 1994; Fishwild et al., 1996), Xenomouse II generated Mabs to all human antigens tested to date. Xenomouse II strains mounted a strong human antibody response to different human antigens, presented either as soluble proteins or expressed on the surfaces of cells. Immunization with each of the three human antigens tested yielded a panel of 10-25 antigen-specific human IgG,K Mabs. For each antigen, a set of antibodies 20 with affinities in the range of 109-10to M 4 was obtained. Several measures were taken to confirm that the affinity values represent univalent binding kinetics rather than avidity: BIAcore assays with intact antibodies were carried out with sensor chips coated at low antigen density to minimize the probability of bivalent binding; for two antibodies, the assay was repeated with monovalent Fab fragments; some of the antibodies were also tested by solution radioimmunoassay. From the results ofthese measurements, we conclude that antibodies with affinities in the range of 10'° M" are readily attainable with the XenoMouse. The affinity values obtained for XenoMouse-derived antibodies are the highest to be reported for human antibodies against human antigens produced from either engineered mice (Lonberg et al., Fishwild et al., 1996) or from combinatorial libraries (Vaughan et al., 1996). These high affinities combined with the extensive amino acid substitution as a result of -46somatic mutation in the V genes confirms that the mechanism of affinity maturation is intact in Xenomouse II and comparable to that in wildtype mice.

These results show that the large antibody repertoire on the human Ig YACs is being properly exploited by the mouse machinery for antibody diversification and selection, and, due to the lack of immunological tolerance to human proteins, can yield high affinity antibodies against any antigen of interest, including human antigens. The facility with which antibodies to human antigens can be generated by the human immunoglobulin genes in these mice provides further confirmation that self tolerance at the B-cell level is acquired and not inherited.

The ability to generate high affinity fully human antibodies to human antigens has obvious practical implications: Fully human antibodies are expected to minimize the immunogenic and allergic responses intrinsic to mouse or mouse-derivatized Mabs and thus to increase the efficacy and safety of the administered antibodies. Xenomouse II offers the opportunity of providing a substantial advantage in the treatment of chronic and recurring human diseases, such as inflammation, autoimmunity, and cancer, which require repeated antibody administrations. The rapidity and reproducibility with which XenoMouse II yields a panel of fully human high affinity antibodies indicates the potential advance it offers over other technologies for human antibody production. For example, in contrast to phage display, which requires intensive efforts to enhance the affinity of many Sof its derived antibodies and yields single chain Fvs or Fabs, Xenomouse II antibodies are high affinity fully intact immunoglobulins which can be produced from hybridomas without further engineering.

20 The strategy described here for creation of an authentic human humoral immune system in mice can be applied towards humanization of other multi-gene loci, such as the T cell receptor or the major histocompatibility complex, that govern other compartments of the mouse immune system (Jakobovits, 1994). Such mice would be valuable for elucidating the structure-function relationships of the human loci and their involvement in the evolution of the immune system.

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53 Page(s) i 1 iI L are claims pages They appear after the sequence listing(s) SEQUENCE LISTING GENERAL INFORMATION:

APPLICANT:

NAME: Abgenix, Inc.

STREET: 7601 Dumbarton Circle CITY: Freemont STATE: CA COUNTRY: USA ZIP: 94555 (ii) TITLE OF INVENTION: TRANSGENIC MAMMALS HAVING HUMAN IG LOCI INCLUDING PLURAL VH AND VK REGIONS AND ANTIBODIES PRODUCED

THEREFROM

(iii) NUMBER OF SEQUENCES: 51 (iv) COMPUTER READABLE FORM: MEDIUM TYPE: Floppy disk COMPUTER: IBM PC compatible OPERATING SYSTEM: PC-DOS/MS-DOS SOFTWARE: PatentIn Release Version #1.30 CURRENT APPLICATION DATA: APPLICATION NUMBER: PCT/US97/23091 FILING DATE: 03-DEC-1997

CLASSIFICATION:

INFORMATION FOR SEQ ID NO:1: SEQUENCE CHARACTERISTICS: LENGTH: 23 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: other nucleic acid DESCRIPTION: /desc "primer" (xi) SEQUENCE DESCRIPTION: SEQ ID NO:1: CAGGTGCAGC TGGAGCAGTC TGG 23 INFORMATION FOR SEQ ID NO:2: SEQUENCE CHARACTERISTICS: LENGTH: 24 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: other nucleic acid DESCRIPTION: /desc "primer" (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: GCTGAGGGAG TAGAGTCCTG AGGA 24 INFORMATION FOR SEQ ID NO:3: SEQUENCE CHARACTERISTICS: LENGTH: 49 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:3: TTACTGTGCG AGACATAGGA ATCATGGGAG CTACGGGGAC TACTGGGGC 49 INFORMATION FOR SEQ ID NO:4: SEQUENCE CHARACTERISTICS: LENGTH: 52 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:4: TTACTGTGCG AGAGATCGGG GAAATAGCAC TGGCCTCTTT GACTACTGGG GC 52 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 49 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID TTACTGTACC ACAGAGGGCT ACACTAACTA CCCCTACTAC TACTACGGT 49 INFORMATION FOR SEQ ID NO:6: SEQUENCE CHARACTERISTICS: LENGTH: 65 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:6: TTACTGTGCG AGAGATAGGA GTGTTGTAGT ACCAGCTGCT ATACCCAAAC TACTACTACT ACGGT INFORMATION FOR SEQ ID NO:7: SEQUENCE CHARACTERISTICS: LENGTH: 46 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear

S

(ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:7: TTACTGTGCG AGAGGGGCAG CAGCTGCCCT CTTTGACTAC TGGGGC 46 INFORMATION FOR SEQ ID NO:8: SEQUENCE CHARACTERISTICS: LENGTH: 52 base pairs S' TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear S

S

o.o: (ii) MOLECULE TYPE: DNA (genomic)

S

(xi) SEQUENCE DESCRIPTION: SEQ ID NO:8: TTACTGTGCG AGAGATCTTG ATATTTTGAC TGGTCTCTAC TACTACTACG GT 52 INFORMATION FOR SEQ ID NO:9: SEQUENCE CHARACTERISTICS: LENGTH: 45 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:9: TTACTGTGCG AGAGAGAGAC TGCAGCGGTT TTTGACTACT GGGGC INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 46 base pairs .TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE-DESCRIPTION: SEQ ID TTACTGTGCG AGAGATTGGG GCTGGACCTA CTACTACTAC TACGGT 46 INFORMATION FOR SEQ ID NO:11: SEQUENCE CHARACTERISTICS: LENGTH: 47 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:11: ATTACTGTGC GAATATAGCA GTGGCTGGTG TCTTTGACTA CTGGGGC 47 INFORMATION FOR SEQ ID NO:12: SEQUENCE CHARACTERISTICS: LENGTH: 30 base pairs TYPE: nucleic acid STRANDEDNESS: 'single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:12: TATTACTGTG CGAGGTTAGA CTACTGGGGC INFORMATION FOR SEQ ID NO:13: SEQUENCE CHARACTERISTICS: LENGTH: 51 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:13: TATTACTGTG CGGCCGGATA TAGTAGTGGT CGGGCCTTTG ACTACTGGGG C 51 INFORMATION FOR SEQ ID NO:14: SEQUENCE CHARACTERISTICS: LENGTH: 54 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) SEQUENCE DESCRIPTION: SEQ ID NO:14: TTACTGTGCG AGACATGGCA GTGGCTGGTA CTCTGATGCT TTTGATATCT GGGG 54 o INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID TTAAACGAAC AGTACCCCGA TCACCTTCGG CCAA 34 INFORMATION FOR SEQ ID NO:16: SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:16: ACAGGCTAAC AGTTTCCCTC GGACGTTCGG CCAA 34 58 INFORMATION FOR SEQ ID NO:17: SEQUENCE CHARACTERISTICS: LENGTH: 33 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:17: AAGTATAACA GTGCCCCATT CACTTTCGGC CCT 33 INFORMATION FOR SEQ ID NO:18: SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) e S* (xi) SEQUENCE DESCRIPTION: SEQ ID NO:18: ACAGTATGAT AATCTCCCGC TCACTTTCGG CGGA 34 INFORMATION FOR SEQ ID NO:19: SEQUENCE CHARACTERISTICS: LENGTH: 34 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:19: AAAGTATAAT AGTTACCCGA TCACCTTCGG CCAA 34 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 33 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID CAGCATAATA GTTACCCATT CACTTTCGGC CCT 33 INFORMATION FOR SEQ ID NO:21: SEQUENCE CHARACTERISTICS: LENGTH: 32 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:21: AATATTATAG TACTCCGCTC ACTTTCGGCG GA 32 INFORMATION FOR SEQ ID NO:22: SEQUENCE CHARACTERISTICS: LENGTH: 33 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) *.o (xi) SEQUENCE DESCRIPTION: SEQ ID NO:22: CAGTATGGTA GCTCACCTCG CACTTTTGGC CAG 33 INFORMATION FOR SEQ ID NO:23: SEQUENCE CHARACTERISTICS: LENGTH: 20 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Cys Ser Arg 1 5 10 Ser Thr Ser Thr INFORMATION FOR SEQ ID NO:24: SEQUENCE CHARACTERISTICS: LENGTH: 80 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:24: Leu Ser Leu Thr Cys Ala Val Tyr Gly Gly 1 5 10 Trp Ser Trp Ile Arg Gln Pro Pro Gly Lys 25 Glu Ile Asn His Ser Gly Ser Thr Asn Tyr 35 40 Arg Val Thr Ile Ser Val Asp Thr Ser Lys 55 Leu Ser Ser Val Thr Ala Ala Asp Thr Ala 65 70 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 119 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Ser Phe Ser Gly Tyr Gly Leu Glu Trp Ile Asn Pro Ser Leu Lys Asn Gln Phe Ser Leu Val Tyr Tyr Cys Ala 75 Tyr Gly Ser Lys Arg (xi) Leu 1 Trp Glu Arg Leu SEQUENCE DESCRIPTION: SEQ ID Ser Leu Thr Cys Ala Val Tyr Gly Gly 5 10 Ser Trp Ile Arg Gln Pro Pro Gly Lys 25 Ile Asn Gln Ser Gly Ser Thr Asn Tyr 40 Val Ile Ile Ser Ile Asp Thr Ser Lys 55 Ser Ser Val Thr Ala Ala Asp Thr Ala 70 61 Ser Gly Asn Thr Val 75 Phe Leu Pro Gin Tyr Ser Glu Ser Phe Tyr Gly Trp Leu Ser Cys Tyr Ile Lys Leu Ala Tyr Gly Ser Lys Arg Glu Thr Pro His Ala Phe Asp Ile Trp Gly Gin Gly Thr Met Val Thr 90 Val Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro 100 105 110 Cys Ser Arg Ser Thr Ser Thr 115 INFORMATION FOR SEQ ID NO:26: SEQUENCE CHARACTERISTICS: LENGTH: 120 amino-acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:26: Leu Ser Leu Thr Cys Ala Val Tyr Gly Gly Ser Phe Ser Gly Tyr Tyr 1 5 10 Trp Thr Trp Ile Arg Gln Pro Pro Gly Lys Gly Leu Glu Trp Ile Gly 20 25 Glu Ile Ile His His Gly Asn Thr Asn Tyr Asn Pro Ser Leu Lys Ser 35 40 Arg Val Ser Ile Ser Val Asp Thr Ser Lys Asn Gin Phe Ser Leu Thr 55 Leu Ser Ser Val Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg 70 75 SGly Gly Ala Val Ala Ala Phe Asp Tyr Trp Gly Gin Gly Thr Leu Val 85 90 Thr Val Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala 100 105 110 Pro Cys Ser Arg Ser Thr Ser Thr 115 120 INFORMATION FOR SEQ ID NO:27: SEQUENCE CHARACTERISTICS: LENGTH: 82 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:27: Ser Leu Lys Ile Ser Cys Lys Gly Ser Gly 1 5 10 Trp Ile Gly Trp Val Arg Gin Met Pro Gly 25 Gly Ile Ile Tyr Pro Gly Asp Ser Asp Thr 40 Gin Gly Gin Val Thr Ile Ser Ala Asp Lys 55 Leu Gin Trp Ser Ser Leu Lys Ala Ser Asp 70 Ala Arg INFORMATION FOR SEQ ID NO:28: SEQUENCE CHARACTERISTICS: LENGTH: 121 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Tyr Ser Phe Thr Ser Lys Gly Leu Glu Trp Arg Tyr Ser Pro Ser Ser Ile Ser Thr Ala Thr Ala Met Tyr Tyr 75 a Tyr Met Phe Tyr Cys Tyr Met Phe Tyr Cys Leu Leu (xi) Ser 1 Trp Gly Gin Leu Ala Val Ala SEQUENCE DESCRIPTION: SEQ ID NO:28: Leu Lys Ile Ser Cys Lys Gly Ser Gly 5 10 Ile Gly Trp Val Arg Gin Met Pro Gly 25 Ile Ile Tyr Pro Gly Asp Ser Asp Thr 40 Gly Gin Val Thr Ile Ser Ala Asp Lys 55 Gin Trp Ser Ser Leu Lys Ala Ser Asp 70 Arg Gin Asp Gly Asp Ser Phe Asp Tyr 90 Thr Val Ser Ser Ala Ser Thr Lys Gly 100 105 Pro Cys Ser Arg Ser Thr Ser Thr 115 120 Tyr Lys Arg Ser Thr 75 Trp Pro Ser Gly Tyr Ile Ala Gly Ser Phe Leu Ser Ser Met Gin Val Thr Glu Pro Thr Tyr Gly Phe 110 Ser Trp Ser Ala Tyr Thr Pro INFORMATION FOR SEQ ID NO:29: SEQUENCE CHARACTERISTICS: LENGTH: 83 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:29: Arg Ser Leu Arg Leu Ser Cys Ala Ala Ser 1 5 10 Tyr Gly Met His Trp Xaa Arg Gin Ala Pro 25 Val Ala Val Ile Ser Tyr Asp Gly Ser Asn 40 Val Lys Gly Arg Phe Thr Ile Ser Arg Asp 50 55 Tyr Leu Gin Met Asn Ser Leu Arg Ala Glu 70 Cys Ala Arg INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 122 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Gly Phe Thr Phe Ser Gly Lys Gly Leu Glu Lys Tyr Tyr Ala Asp Asn Ser Lys Asn Thr Asp Thr Ala Val Tyr 75 Gly Phe Thr Phe Ser Gly Lys Gly Leu Glu Lys Tyr Tyr Val Asp Asn Ser Lys Asn Thr Asp Thr Ala Val Tyr 75 Ser Trp Ser Leu Tyr Ser Trp Ser Leu Tyr (xi) Arg 1 Tyr Val Val Tyr SEQUENCE DESCRIPTION: SEQ ID Ser Leu Arg Leu Ser Cys Ala Ala Ser 5 10 Gly Met His Trp Xaa Arg Gin Ala Pro 25 Ala Glu Ile Ser Tyr Asp Gly Ser Asn 40 Lys Gly Arg Leu Thr Ile Ser Arg Asp 55 Leu Gin Met Asn Ser Leu Arg Ala Glu 70 Cys Ala Arg Asp Arg Leu Gly Ile Phe Asp Tyr Trp Gly Gin Gly Thr 90 Leu Val Thr Val Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro 100 105 110 Leu Ala Pro Cys Ser Arg Ser Thr Ser Thr 115 120 INFORMATION FOR SEQ ID NO:31: SEQUENCE CHARACTERISTICS: LENGTH: 17 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:31: Arg Thr Val Ala Ala Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu 1 5 10 Gin INFORMATION FOR SEQ ID NO:32: SEQUENCE CHARACTERISTICS: LENGTH: 75 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) Thr 1 Tyr Ser Gly Ala SEQUENCE DESCRIPTION: SEQ ID NO:32: Ile Thr Cys Gin Ala Ser Gin Asp Ile 5 10 Gin Gin Lys Pro Gly Lys Ala Pro Lys 25 Asn Leu Glu Thr Gly Val Pro Ser Arg 40 Thr Asp Phe Thr Phe Thr Ile Ser Ser 55 Thr Tyr Tyr Cys Gin Gin Asp Asn Leu 70 Ser Asn Tyr Leu Asn Trp Leu Leu Ile Tyr Asp Ala Phe Ser Gly Ser Gly Ser Leu Gin Pro Glu Asp Ile Pro INFORMATION FOR SEQ ID NO:33: SEQUENCE CHARACTERISTICS: LENGTH: 104 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:33: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Ser Lys Phe Leu Ser Trp 1 5 10 Phe Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile Tyr Gly Thr 25 Ser Tyr Leu Glu Thr Gly Val Pro Ser Ser Phe Ser Gly Ser Gly Ser 35 40 Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gin Pro Glu Asp Val 50 55 Ala Thr Tyr Phe Cys Gin Gin Asp Asp Leu Pro Tyr Thr Phe Gly Pro 65 70 75 Gly Thr Lys Val Asp Ile Lys Arg Thr Val Ala Ala Pro Ser Val Phe 85 90 Ile Phe Pro Pro Ser Asp Glu Gin 100 INFORMATION FOR SEQ ID NO:34: SEQUENCE CHARACTERISTICS: LENGTH: 104 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:34: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Ser Asn Tyr Leu Asn Trp 1 5 10 Tyr Gin Gin Lys Ala Gly Lys Ala Pro Lys Val Leu Ile Tyr Ala Ala 25 Ser Asn Leu Glu Ala Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser 40 Gly Thr Asp Phe Thr Phe Thr Ile Ser Ser Leu Gin Pro Glu Asp Ile 55 66 Ala Thr Tyr Tyr Cys Gin His Asp Asn Leu Pro Leu Thr Phe Gly Gly 70 75 Gly Thr Lys Val Glu Ile Lys Arg Thr Val Ala Ala Pro Ser Val Phe 90 Ile Phe Pro Pro Ser Asp Glu Gin 100 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 74 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein *st*: (xi) SEQUENCE DESCRIPTION: SEQ ID *0* Thr Cys Arg Ala Ser Gin Ser Ile Ser Ser Tyr Leu Asn Trp Tyr Gin 1 5 10 Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile Tyr Ala Ala Ser Ser 25 Leu Gln Ser Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr 40 Asp Phe Thr Leu Thr Ile Ser Ser Leu Gin Pro Glu Asp Phe Ala Thr 55 Tyr Tyr Cys Gin Gin Ser Tyr Ser Thr Pro 9 INFORMATION FOR SEQ ID NO:36: SEQUENCE CHARACTERISTICS: LENGTH: 103 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:36: Thr Cys Arg Ala Ser Gin Ser Ile Ser Asn Tyr Leu Asn Trp Tyr Gin 1 5 10 Gin Lys Pro Gly Lys Ala Pro Lys Phe Leu Ile Tyr Gly Ala Ser Ser 25 67 Leu Glu Ser Gly Val Pro Ser Asp Phe Thr Leu Thr Ile Ser 55 Tyr Tyr Cys Gin Gin Ser Tyr 70 Thr Xaa Val Glu Ile Lys Arg Phe Pro Pro Ser Asp Glu Gin 100 INFORMATION FOR SEQ ID NO:37: SEQUENCE CHARACTERISTICS LENGTH: 82 amino ac TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Arg Phe Ser Gly Ser Gly Ser Gly Thr 40 Ser Leu Gin Pro Glu Asp Phe Ala Thr Ser Asn Pro Leu Thr Phe Gly Gly Gly 75 Thr Val Ala Ala Pro Ser Val Phe Ile 90 a a@ S a te a a

S

S.

a

S

a (xi) SEQUENCE DESCRIPTION: SEQ ID NO:37: Thr Ile Asn Cys Lys Ser Ser Gin Ser Val 1 5 10 Lys Asn Tyr Leu Ala Trp Tyr Gin Gin Lys 20 25 Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe 50 Leu Gin Ala Glu Asp Val Ala Val Tyr Tyr 70 Thr Pro INFORMATION FOR SEQ ID NO:38: SEQUENCE CHARACTERISTICS: LENGTH: 111 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Leu Pro Ser Thr Cys 75 Ser Pro Pro Ile Tyr Asn Pro Asp Ser Tyr Asn Lys Arg Ser Ser (xi) SEQUENCE DESCRIPTION: SEQ ID NO:38: Thr Ile Asn Cys Lys Ser Ser Gin Ser Val Leu Tyr Ile Ser Asn Asn 1 5 10 Lys Asn Tyr Leu Ala Trp Tyr Gin Gin Lys Pro Gly Gin Ser Pro Lys 25 Leu Leu Ile Tyr Trp Ala Ser Thr Arg Lys Ser Gly Val Pro Asp Arg 40 Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser 55 Leu Gin Ala Glu Asp Val Ala Val Tyr Tyr Cys Gin Gin Tyr Tyr Asp 70 75 Thr Pro Phe Thr Phe Gly Pro Gly Thr Lys Val Asp Ile Lys Arg Thr 90 Val Ala Ala Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu Gin 100 105 110 INFORMATION FOR SEQ ID NO:39: SEQUENCE CHARACTERISTICS: LENGTH: 20 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:39: Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Cys Ser Arg 1 5 10 Ser Thr Ser Thr INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 76 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID Val Ser Gly Gly Ser Ile Ser Ser Gly Gly Tyr Tyr Trp Ser Trp Ile 1 5 10 69 Arg Gin His Pro Gly Lys Gly Leu Glu Trp Ile Gly Tyr Ile Tyr Tyr 25 Ser Gly Ser Thr Tyr Tyr Asn Pro Ser Leu Lys Ser Arg Val Thr Ile 40 Ser Val Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys Leu Ser Ser Val 55 Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg 70 INFORMATION FOR SEQ ID NO:41: SEQUENCE CHARACTERISTICS: LENGTH: 118 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:41: Val Ser Gly Gly Ser Ile Asn Ser Gly Asp Tyr Tyr Trp Ser Trp Ile 1 5 10 Arg Gln His Pro Gly Lys Gly Leu Asp Cys Ile Gly Tyr Ile Tyr Tyr 25 Ser Gly Ser Thr Tyr Tyr Asn Pro Ser Leu Lys Ser Arg Val Thr Ile 35 40

S

Ser Val Asp Thr Ser Lys Asn Gin Phe Phe Leu Lys Leu Thr Ser Val 50 55 Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg Ser Thr Val Val 65 70 75 Asn Pro Gly Trp Phe Asp Pro Trp Gly Gin Gly Tyr Leu Val Thr Val 90 Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Cys 100 105 110 Ser Arg Ser Thr Ser Thr 115 INFORMATION FOR SEQ ID NO:42: SEQUENCE CHARACTERISTICS: LENGTH: 117 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:42: Val Ser Gly Gly Ser Ile Asn Ser Gly Asp 1 5 10 Arg Gin His Pro Gly Lys Gly Leu Glu Trp 25 Ser Gly Asn Thr Phe Tyr Asn Pro Ser Leu 40 Ser Leu Asp Thr Ser Lys Asn Gin Phe Ser 55 Thr Ala Ala Asp Thr Ala Val Cys Tyr Cys 70 Thr Gly Ala Phe Asp Ile Trp Gly Gin Gly 90 Ser Ala Ser Thr Lys Gly Pro Ser Val Phe 100 105 Arg Ser Thr Ser Thr 115 INFORMATION FOR SEQ ID NO:43: SEQUENCE CHARACTERISTICS: LENGTH: 116 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Tyr lie Lys Leu Ala 75 Thr Pro Tyr Gly Ser Lys Arg Met Leu Trp Ser Arg Leu Asn Val Ala Ser Ile Val Ser Ile Thr Pro 110 Trp Tyr Thr Ser Val Val Cys Ile Tyr Ile Val Thr Ser Ser (xi) Val 1 Arg Ser Ser Thr SEQUENCE DESCRIPTION: SEQ ID NO:43: Ser Gly Gly Ser Ile Ser Ser Gly Asp 5 10 Gin His Pro Gly Lys Gly Leu Glu Trp 25 Gly Asn Thr Tyr Tyr Asn Pro Ser Leu 40 Ile Asp Thr Ser Glu Asn Gin Phe Ser Ala Ala Asp Thr Ala Val Tyr Tyr Cys 70 Tyr Ile Lys Leu Ala 75 Trp Thr Trp Tyr Ile Tyr Arg Val Ser Leu Ser Ser Lys Pro Val Ile Tyr Met Val Thr Gly Gly Glu Asp .Tyr Trp Gly Gin Gly Thr Leu Val Thr Val Ser Ser 90 Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Cys Ser Arg 100 105 110 Ser Thr Ser Thr 115 INFORMATION FOR SEQ ID NO:44: SEQUENCE CHARACTERISTICS: LENGTH: 76 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:44: Val Ser Gly Gly Ser Val Ser Ser Gly Ser 1 5 10 Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp 25 Ser Gly Ser Thr Asn Tyr Asn Pro Ser Leu 40 Ser Val Asp Thr Ser Lys Asn Gin Phe Ser 50 55 Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys 65 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 117 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Tyr Trp Ser Trp Ile Gly Tyr Ile Tyr Tyr Ser Arg Val Thr Ile Lys Leu Ser Ser Val Arg (xi) SEQUENCE DESCRIPTION: SEQ ID Val Ser Gly Gly Ser Val Ser Ser Gly Asp Tyr Tyr Trp Ser Trp Ile 1 5 10 Arg Gin Pro Pro Gly Lys Gly Leu Glu Trp Ile Gly His Leu Tyr Tyr 25 Ser Gly Asn Thr Asn Tyr Asn Pro Ser Leu Lys Ser Arg Val Thr Ile 40 72 Ser Leu Asp Thr Ser Lys Asn Gin Phe Ser Leu Lys Leu Ser Ser Val 55 Thr Ala Ala Asp Thr Ala Val Tyr Tyr Cys Ala Arg Asp Phe Leu Thr 70 75 Gly Ser Phe Phe Asp Tyr Trp Gly Gin Gly Thr Leu Val Thr Val Ser 90 Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Cys Ser 100 105 110 Arg Ser Thr Ser Thr 1.15 INFORMATION FOR SEQ ID NO:46: SEQUENCE CHARACTERISTICS: LENGTH: 17 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:46: Arg Thr Val Ala Ala Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu 1 5 10 Gin INFORMATION FOR SEQ ID NO:47: SEQUENCE CHARACTERISTICS: LENGTH: 75 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:47: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Ser Asn Tyr Leu Asn Trp 1 5 10 Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile Tyr Asp Ala 25 Ser Asn Leu Glu Thr Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser 40 Gly Thr Cys Phe Thr Phe Thr Ile Ser Ser Leu Gin Pro Glu Asp Ile 55 Ala Thr Tyr Tyr Cys Gin Gin Asp Asn Leu Pro 70 INFORMATION FOR SEQ ID NO:48: SEQUENCE CHARACTERISTICS: LENGTH: 104 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:48: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Asn Asn Tyr Leu Asn Trp 1 5 10 Phe Gln Gin Lys Pro Gly Lys Ala Pro Lys Val Leu Ile His Asp Ala 20 25 Ser Asn Leu Glu Thr Gly Gly Pro Ser Arg Phe Ser Gly Ser Gly Ser 35 40 Gly Thr Cys Phe Thr Phe Thr Ile Ser Gly Leu Gin Pro Glu Asp Ile 50 55 Ala Thr Tyr Tyr Cys Gin Gin Glu Ser Leu Pro Leu Thr Phe Gly Gly 70 75 Gly Thr Lys Val Glu Ile Lys Arg Thr Val Ala Ala Pro Ser Val Phe 90 Ile Phe Pro Pro Ser Asp Glu Gin 100 INFORMATION FOR SEQ ID NO:49: SEQUENCE CHARACTERISTICS: LENGTH: 104 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:49: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Thr Ile Tyr Leu Asn Trp 1 5 10 Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile Asn Asp Ala 25 74 Ser Ser Leu Glu Thr Gly Val Gly Thr Cys Phe Thr Phe Thr 55 Ala Thr Tyr Tyr Cys Gin Gin 70 Gly Thr Lys Val Ala Ile Lys Ile Phe Pro Pro Ser Asp Glu 100 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS LENGTH: 104 amino a TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Pro Leu Arg Phe Ser Gly Ser Gly Ser 40 Ile Ser Ser Leu Gin Pro Glu Asp Ile Asp Asn His Pro Leu Thr Phe Gly Gly 75 Arg Thr Val Ala Ala Pro Ser Val Phe 90 Gin 0 0.

(xi) SEQUENCE DESCRIPTION: SEQ ID Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile 1 5 10 Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys 25 Ser Asn Leu Glu Thr Gly Val Pro Ser Arg Gly Thr Cys Phe Thr Phe Thr Ile Ser Ser Gly Thr Tyr Val Cys Gin Gin Glu Ser Leu 70 Cys Thr Lys Leu Glu Ile Lys Arg Thr Val 90 Ile Phe Pro Pro Ser Asp Glu Gin 100 INFORMATION FOR SEQ ID NO:51: SEQUENCE CHARACTERISTICS: LENGTH: 104 amino acids TYPE: amino acid

STRANDEDNESS:

TOPOLOGY: linear (ii) MOLECULE TYPE: protein Ser Leu Phe Leu Pro 75 Ala Leu Tyr Ser Glu Phe Ser Asn Asp Gly Asp Gly Val Trp Ala Ser Val Gin Phe (xi) SEQUENCE DESCRIPTION: SEQ ID NO:51: Thr Ile Thr Cys Gin Ala Ser Gin Asp Ile Ser Asn Tyr Leu Asn Trp 1 5 10 Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile Asn Asp Ala 25 Ser Asp Leu Giu Thr Gly Ile Pro Ser Arg Phe Ser Gly Ser Gly Ser 40 Gly Thr Cys Phe Thr Phe Thr Ile Ser Asn Leu Gin Pro Giu Asp Ile 55 Ala Thr Tyr Tyr Cys Gin Gin Asp Asn Ser Pro Leu Thr Phe Gly Gly 70 75 Gly Thr Lys Vai Giu Ile Arq Arg Thr Val Ala Ala Pro Ser Val Phe 90 Ile Phe Pro Pro Ser Asp Giu Gin .100

Claims (20)

1. A transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous immunoglobulin (Ig) locus, such that the mammal would not display normal B-cell development; an inserted human heavy chain Ig locus in substantially germline configuration, the human heavy chain Ig locus comprising a human mu constant region and regulatory and switch sequences thereto, a plurality of human JH genes, a plurality of human DH genes, and a plurality of human VH genes; and an inserted human kappa light chain Ig locus in substantially germline configuration, the human kappa light chain Ig locus comprising a human kappa constant region, a plurality of JK genes, and a plurality of VK genes, wherein the number of VH and VK genes inserted are selected to substantially restore normal B-cell development in the mammal.

2. The mammal of Claim 1, wherein the heavy chain Ig locus comprises a second constant region selected from the group consisting of human gamma-1, human gamma-2, human gamma-3, human gamma-4, alpha, epsilon, and delta. 20 3 The mammal of Claim 1, wherein the number of VH genes is greater than about 4 The mammal of Claim 1, wherein the number of VK genes is greater than about The mammal of Claim 1, wherein the number of DH genes is greater than about the number of genes is greater than about 4, the number of V, genes is greater than about 20, the number of JK genes is greater than about 4, and the number of VK genes is greater than about

6. The mammal of Claim 1, wherein the number of DH genes, the number of JH genes, the number of genes, the number of JK genes, and the number of VK genes are selected such that the Ig loci are capable of encoding greater than about 1 x 10' different functional antibody sequence combinations.

7. The mammal of Claim 1, wherein in a population of mammals B-cell function is reconstituted on average to greater than about 50% as compared to wild type.

8. In a transgenic non-human mammal having a genome that comprises modifications the modifications rendering the mammal capable of producing human immunoglobulin molecules but substantially incapable of producing functional endogenous antibody molecules, the improvement comprising: insertion into the genome of the mammal of sufficient human VH, DH, Ja, VK, and JK genes such that the mammal is capable encoding greater than about 1 x 106 different functional human immunoglobulin sequence combinations, without accounting for junctional diversity or somatic mutation events.

9. In a transgenic non-human mammal having a genome that comprises modifications, the modifications rendering the mammal capable of producing human immunoglobulin molecules but •substantially incapable of producing functional endogenous antibody molecules, which modifications, with respect to the mammal's incapacity to produce functional endogenous antibody molecules would not allow the mammal to display normal B-cell development, the improvement comprising: insertion into the genome of the mammal of sufficient human VH, DH, JH, VK, and JK genes such that the mammal is capable of encoding greater than about I x 10 6 different functional human immunoglobulin sequence combinations and sufficient VH and VK genes to substantially restore normal B-cell development in the mammal.

10. In the mammal of Claim 9, wherein in a population of mammals B-cell function is S 20 reconstituted on average to greater than about 50% as compared to wild type. I1. A transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglobulin (Ig) locus; an inactivated endogenous kappa light chain Ig locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yH2; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2.

12. A transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglobulin (Ig) locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence ofyH2; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2.

13. A transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglobulin (Ig) locus; an inactivated endogenous kappa light chain Ig locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence ofyH2 without the presence of a human gamma-2 constant region; and an insered human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2. 14 A transgenic non-human mammal having a genome, the genome comprising 20 modifications, the modifications comprising: an inactivated endogenous heavy chain immunoglobulin (Ig) locus; an inactivated endogenous kappa light chain Ig locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yH2 without the presence of a human gamma-2 constant region; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2. A transgenic non-human mammal having a genome, the genome comprising modifications, the modifications comprising: an inacti-ted endogenous heavy chain immunoglobulin (Ig) locus; an inserted human heavy chain Ig locus, the human heavy chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yH2 without the presence of a human gamma-2 constant region; and an inserted human kappa light chain Ig locus, the human kappa light chain Ig locus comprising a nucleotide sequence substantially corresponding to the nucleotide sequence of yK2.

16. A method for the production of human antibodies, comprising: inoculating a mammal of any one of Claims 1-10 with an antigen; i collecting and immortalizing lymphocytic cells to obtain immortal cell lines secreting human antibodies that specifically bind to the antigen with an affinity of greater than 109 M; and isolating the antibodies from the immortal cell lines.

17. The method of Claim 1, wherein the antigen is I-8.

18. The method of Claim 11, wherein the antigen is EGFR.

19. The method of Claim 11, wherein the antigen is TNF-a. An antibody produced by the method of Claim 11.

21. An anti-IL-8 antibody produced by the mc:hod of Claim 12. 20

22. An anti-EGFR antibody produced by the method of Claim 13.

23. An anti-TNF-a antibody produced by the method of Claim 14.

24. In a method for the production of transgenic mice, the transgenic mice having a genome, the genome comprising modifications, the modifications comprising insertion of a plurality of human variable regions, the improvement comprising: insertion of the human variable regions from a yeast artificial chromosome. Transgenic mice and transgenic offspring therefrom produced through use of the improvement of Claim 19.

26. In a transgenic mammal, the transgenic mammal comprising a genome, the genome comprising modifications, the modifications comprising an inserted human heavy chain immunoglobulin transgene, the improvement comprising: the transoene comprising selected sets of human variable region genes that ,nable human-like junctional diversity and human-like complementarity determining region 3 (CDR3) lengths.

27. In the improvement of Claim 26, wherein the human-like junctional diversity comprises average N-addition lengths of 7.7 bases.

28. In the improvement of Claim 26, wherein the human-like CDR3 lengths comprise between about 2 through about 25 residues with an average of about 14. DATED this 13 th Day of March 2002 Abgenix, Inc By their Patent Attorneys CULLEN CO 81 81