AU2021266246A1 - Triterpene saponins, methods of synthesis, and uses thereof - Google Patents

Triterpene saponins, methods of synthesis, and uses thereof Download PDF

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AU2021266246A1
AU2021266246A1 AU2021266246A AU2021266246A AU2021266246A1 AU 2021266246 A1 AU2021266246 A1 AU 2021266246A1 AU 2021266246 A AU2021266246 A AU 2021266246A AU 2021266246 A AU2021266246 A AU 2021266246A AU 2021266246 A1 AU2021266246 A1 AU 2021266246A1
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group
bno
nitrogen
oxygen
sulfur
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AU2021266246B2 (en
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Michelle Adams
Kai DENG
David Gin
Philip Livingston
Nicholas Perl
Govind Ragupathi
Annie Won
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Sloan Kettering Institute for Cancer Research
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Sloan Kettering Institute for Cancer Research
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    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
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    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

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Abstract

The present invention relates to triterpene glycoside saponin-derived adjuvants, syntheses thereof, intermediates thereto, and uses thereof. QS-7 is a potent immuno-adjuvant that is significantly less toxic than QS-21, a related saponin that is currently the favored adjuvant in anticancer and antiviral vaccines. Tedious isolation and purification protocols have hindered the clinical development of QS-7. A novel semi-synthetic method is provided wherein a hydrolyzed prosapogenin mixture is used to synthesize QS-7, QS-21, and related analogs, greatly facilitating access to QS-7 and QS-21 analogs for preclinical and clinical evaluation.

Description

TRITERPENE SAPONINS, METHODS OF SYNTHESIS, AND USES THEREOF CROSS REFERENCE TO RELATED APPLICATIONS
[0001] The present application claims priority under 35 U.S.C. § 119(e) to U.S. provisional application U.S.S.N. 61/043,197, filed April 8, 2008, the contents of which are incorporated herein by reference.
FIELD OF THE INVENTION
[0003] The present invention relates to triterpene glycoside saponin-derived adjuvants, syntheses thereof, and intermediates thereto. The invention also provides pharmaceutical compositions comprising compounds of the present invention and methods of using said compounds or compositions in the treatment of infectious diseases and cancer.
BACKGROUND OF THE INVENTION
[0004] Saponins are glycosidic compounds that are produced as secondary metabolites of steroids and triterpenes. They are widely distributed among plant species and in some marine invertebrates. The chemical structure of saponins imparts a wide range of pharmacological and biological activities, including some potent and efficacious immunological activity. Semi purified saponin extracts from the bark of the South American Quillaja saponariaMolina tree (Quillajasaponins) exhibit remarkable immunoadjuvant activity. Because the Quillajasaponins are found as a mixture of at least one hundred structurally related saponin glycosides, their separation and isolation is often difficult if not prohibitive.
[0005] The most active fraction of these extracts, designated QS-21, has been found to include a mixture of two principal isomeric triterpene glycoside saponins, each incorporating a quillaic acid triterpene core, flanked on either side by complex oligosaccharides and a stereochemically rich glycosylated fatty acyl chain. The potency of QS-21 and its favorable toxicity profile in dozens of recent and ongoing vaccine clinical trials (melanoma, breast cancer, small cell lung cancer, prostate cancer, HIV-1, malaria) have established it as a promising new adjuvant for immune response potentiation and dose-sparing. However, the tolerated dose of QS-21 does not exceed 100 pg, above which significant local and systemic side effects arise.
[0006] Access to other potent Quillajasaponins has been hindered by difficulties in obtaining pure species from Quillajasaponin extracts. Futhermore, the structural identity of many Quillajasaponins remains only postulated. The discovery of new Quillajasaponins and related analogs with potent adjuvant activity and low toxicity presents a challenge to the fields of chemical synthesis and medicine.
SUMMARY OF THE INVENTION
[0007] The present invention encompasses the recognition that the clinical use of QS-21 as an adjuvant is limited due to toxicity at higher doses, and that QS-7, a related Quillajasaponin, is difficult to isolate in pure form. Moreover, synthetic access to QS-21, QS-7 and other triterpene glycoside saponins is hindered by their structural complexity. The present invention provides compounds that are analogs of QS-21 and QS-7.
[0008] In one aspect, the invention provides compounds of formula I: 0 Y-Z Me Me H RY(O)C Me H
0 W H Me V "Me O H H Me OR RxO NI ORx
RxO
or a pharmaceutically acceptable salt thereof, wherein: is a single or double bond; RX'O ORx' W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR,
Y is CH2 , -0-, -NR-, or -NH Z is hydrogen; a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, heterocyclyl, and heteroaryl; or a carbohydrate domain having the structure:
R- R IO 0 R3 10R R 10
R2 or OR'
wherein: each occurrence of R 1 is R or a carbohydrate domain having the structure:
Rc Rd
a c
Rab Ra - -d
wherein: each occurrence of a, b, and c is independently 0, 1, or 2; d is an integer from 1-5, wherein each d bracketed structure may be the same or different; with the proviso that the d bracketed structure represents a furanose or pyranose moiety, and the sum of b and c is 1 or 2; R° is hydrogen; an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1_10 aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R', and Rd is independently hydrogen, halogen, OH, OR, OR, NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R2 is hydrogen, halogen, OH, OR, OC(O)R4, OC(O)OR 4, OC(O)NHR 4, OC(O)NRR4, OC(O)SR 4, NHC(O)R 4 , NRC(O)R4 , NHC(O)OR4 , NHC(O)NHR 4 ,NHC(O)NRR4
, N(R 4) 2 , NHR 4, NRR 4 , N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic, C 1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R3 is hydrogen, halogen, CH 2OR', or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
x OR1 OR O OR Me Me R 4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C1 -26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR , -SR, -NR2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; Ry is -OH, -OR, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO
RXO RxO RxOO Rs is ORX or RxOMe
each occurrence of Rx' is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1_6 aliphatic, or C1_6 heteroaliphatic having 1
2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
[0009] According to another aspect, the invention provides compounds of formula IV: 0 Y' Me Me H RY(O)C Me ' H RxO 0 RsOW Me V "'Me OR O H H Me
RxO IV wherein:
-- is a single or double bond; Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RXO ORX W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; RY is -OH, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO
Rx RxO
Rs is ORX or RxOMe
each occurrence of Rx' is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1- 12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; and each occurrence of Rx is independently hydrogen or an oxygen protecting group.
[0010] According to another aspect, inventive compounds have been shown to be useful as adjuvants. Thus, in certain embodiments, vaccines are provided comprising one or more bacterial, viral, protozoal, or tumor-associated antigens, and one or more inventive compounds. In certain embodiments, one or more antigens are non-covalently associated with a pharmaceutically acceptable excipient. In some embodiments, one or more antigens are conjugated covalently to a pharmaceutically acceptable excipient.
[0011] In another aspect, the present invention provides a method of potentiating an immune response to an antigen, comprising administering to a subject a provided vaccine in an effective amount to potentiate the immune response of said subject to said antigen.
[0012] In another aspect, the present invention provides methods of vaccinating a subject, comprising administering a provided vaccine to said subject. In some embodiments, the subject is human. In some embodiments, the vaccine is administered orally. In other embodiments, the vaccine is administered intramuscularly. In other embodiments, the vaccine is administered subcutaneously. In certain embodiments, the amount of adjuvant compound administered is 10 1000 pg. In certain embodiments, the amount of adjuvant compound administered is 500-1000 pg. In certain embodiments, the amount of adjuvant compound administered is 100-500 pg. In certain embodiments, the amount of adjuvant compound administered is 50-250 pg. In certain embodiments, the amount of adjuvant compound administered is 50-500 pg. In certain embodiments, the amount of adjuvant compound administered is 250-500 pg. The antigen to which the subject is vaccinated may be a cancer, bacterial, viral, proatazoal, or self- antigen.
[0013] In another aspect, the invention provides pharmaceutical compositions comprising compounds of the invention and pharmaceutically acceptable excipients. In certain embodiments, the pharmaceutical composition is a vaccine comprising an antigen and an inventive adjuvant.
[0014] In another aspect, the invention provides kits comprising pharmaceutical compositions of inventive compounds. In some embodiments, the kits comprise prescribing information. In some embodiments, such kits include the combination of an inventive adjuvant compound and another immunotherapeutic agent (e.g.). The agents may be packaged separately or together. The kit optionally includes instructions for prescribing the medication. In certain embodiments, the kit includes multiple doses of each agent. The kit may include sufficient quantities of each component to treat a subject for a week, two weeks, three weeks, four weeks, or multiple months. In certain embodiments, the kit includes one cycle of immunotherapy. In certain embodiments, the kit includes a sufficient quantity of a pharmaceutical composition to immunize a subject against an antigen long term.
[0015] In another aspect, the invention provides a method of using protecting groups to isolate prosapogenins, the method comprising placing protecting groups on a mixture of prosapogenins and then separating the mixture by suitable means to isolate one or more prosapogenin compounds. In some embodiments, the method comprises the steps of: (a) providing a mixture of prosapogenins of formula IV-a:
0 Y' Me Me H RY(O)C Me H
R W H Me V "'Me H H Me O H HON.::r H
HO IV-a wherein:
-- is a single or double bond;
Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RXO ORX W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; Ry is -OH, or a carboxyl protecting group selected from the group consisting of esters,
amides, and hydrazides;
HO
HOX Q- HO HO ~~[ Rs is OH or HOMe
each occurrence of Rx is independently an optionally substituted group selected from 6-10
membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or:
two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2
heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
each occurrence of R is independently hydrogen, an optionally substituted group selected
from acyl, arylalkyl, 6-10-membered aryl, C1 -12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen,
and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; (b) treating said compound of formula IV-a under suitable conditions to form a mixture of prosapogenins of formula IV: 0 Y' Me Me H RY(O)C Me M H RxO 0 RsO 0 W H Me V "Me Rx O H H Me RXO'. oRx
RxO IV wherein each of RY, Y', V, and W is as defined for compounds of formula IV-a, RS is as defined for compounds of formula I, and each occurrence ofR is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; and (c) obtaining said compound IV by suitable physical means.
[0016] In some embodiments, the mixture of prosapogenins in step (a) is enriched one or more compounds of formula IV-a. In some embodiments, the mixture of prosapogenins in step (b) is enriched one or more compounds of formula IV.
[0017] The present invention provides novel semi-synthetic methods for synthesizing QS-7, QS 21, and related analogs, the method comprising coupling a triterpene compound with a compound comprising a saccharide to form a compound of formula I. In some embodiments, the method comprises the steps of: (a) providing a compound of formula IV:
0 Y' Me Me H RY(O)C Me H RxO 0 RW Me V "Me R)OR O H H Me
Rx0N_,:/_Rx RxO IV wherein:
-- is a single or double bond;
Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RXO ORX W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; Ry is -OH, or a carboxyl protecting group selected from the group consisting of ester,
amides, and hydrazides;
RxO
Rx RxO
Rs is ORX or RxOMe
each occurrence of Rx' is independently an optionally substituted group selected from 6-10
membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or:
two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2
heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
each occurrence of R is independently hydrogen, an optionally substituted group selected
from acyl, arylalkyl, 6-10-membered aryl, C1 -12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen,
and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; (b) treating said compound of formula IV under suitable conditions with a compound of formula V: LG-Z V wherein: Z is hydrogen; a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, and heteroaryl; or a carbohydrate domain having the structure:
R- R IO 0 R3 10R R 10
R2 or OR'
wherein: each occurrence of R 1 is Rx or a carbohydrate domain having the structure:
Rc Rd
RR
b R Ra - -d
wherein: each occurrence of a, b, and c is independently 0, 1, or 2; d is an integer from 1-5, wherein each d bracketed structure may be the same or different; with the proviso that the d bracketed structure represents a furanose or pyranose moiety, and the sum of b and c is 1 or 2; R° is hydrogen, an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R', and Rd is independently hydrogen, halogen, OH, OR, OR,
NR 2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4 4 , OC(O)NHR4 R 2 is hydrogen, halogen, OH, OR, OC(O)R4, OC(O)OR , OC(O)NRR 4
, OC(O)SR 4, NHC(O)R 4 , NRC(O)R 4, NHC(O)OR4 , NHC(O)NHR 4 ,NHC(O)NRR4
, N(R 4) 2 , NHR 4, NRR 4 , N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic, C 1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R 3 is hydrogen, halogen, CH 2 OR',or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
X OR1 OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C1 -26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR , -SR, -NR2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rxis as defined for compounds of formula IV; and LG is a suitable leaving group selected from the group consisting of halogen, imidate, alkoxy, sulphonyloxy, optionally substituted alkylsulphonyl, optionally substituted alkenylsulfonyl, optionally substituted arylsulfonyl, and diazonium moieties; to give a compound of formula I: 0 Y-Z Me Me H RY(O)C Me H
Rst o w Me v",Me W H H H Me RXOR OR
RxO I wherein each of - , RY, Z, V, and W is as defined for compounds of formula IV or V, and Y
is CH 2 , -0-, -NR-, or -NH-.
Definitions
[0018] As used herein, the following definitions shall apply unless otherwise indicated.
[0019] The term "aliphatic" or "aliphatic group," as used herein, means a straight-chain (i.e., unbranched) or branched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation, or a monocyclic hydrocarbon or bicyclic hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic (also referred to herein as "carbocycle," "cycloaliphatic" or "cycloalkyl"), that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-12 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-6 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-5 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-4 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-3 aliphatic carbon atoms, and in yet other embodiments, aliphatic groups contain 1-2 aliphatic carbon atoms. In some embodiments, "cycloaliphatic" (or "carbocycle" or "cycloalkyl") refers to a monocyclic C 3-C 6 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule. Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl groups and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.
[0020] The term "lower alkyl" refers to a C1_4 straight or branched alkyl group. Exemplary lower alkyl groups are methyl, ethyl, propyl, isopropyl, butyl, isobutyl, and tert-butyl.
[0021] The term "lower haloalkyl" refers to a C1_4 straight or branched alkyl group that is substituted with one or more halogen atoms.
[0022] The term "heteroatom" means one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, or silicon; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2H-pyrrolyl), NH (as in pyrrolidinyl) or NW (as in N-substituted pyrrolidinyl)).
[0023] The term "unsaturated," as used herein, means that a moiety has one or more units of unsaturation.
[0024] As used herein, the term "bivalent C -112 (or C1-26, C1_16, C1s) or saturated or unsaturated,
straight or branched, hydrocarbon chain," refers to bivalent alkylene, alkenylene, and alkynylene chains that are straight or branched as defined herein.
[0025] The term "alkylene" refers to a bivalent alkyl group. An "alkylene chain" is a polymethylene group, i.e., -(CH 2)n-, wherein n is a positive integer, preferably from 1 to 6, from
1 to 4, from 1 to 3, from 1 to 2, or from 2 to 3. A substituted alkylene chain is a polymethylene group in which one or more methylene hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
[0026] The term "alkenylene" refers to a bivalent alkenyl group. A substituted alkenylene chain is a polymethylene group containing at least one double bond in which one or more hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
[0027] The term "alkynylene" refers to a bivalent alkynyl group. A substituted alkynylene chain is a polymethylene group containing at least one double bond in which one or more hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
[0028] The term "acyl," used alone or a part of a larger moiety, refers to groups formed by removing a hydroxy group from a carboxylic acid.
[0029] The term "halogen" means F, Cl, Br, or I.
[0030] The terms "aralkyl" and "arylalkyl" are used interchangably and refer to alkyl groups in which a hydrogen atom has been replaced with an aryl group. Such groups include, without limitation, benzyl, cinnamyl, and dihyrocinnamyl.
[0031] The term "aryl" used alone or as part of a larger moiety as in "aralkyl," "aralkoxy," or "aryloxyalkyl," refers to monocyclic or bicyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members. The term "aryl" may be used interchangeably with the term "aryl ring."
[0032] In certain embodiments of the present invention, "aryl" refers to an aromatic ring system which includes, but not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which may bear one or more substituents. Also included within the scope of the term "aryl," as it is used herein, is a group in which an aromatic ring is fused to one or more non-aromatic rings, such as indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like.
[0033] The terms "heteroaryl" and "heteroar-," used alone or as part of a larger moiety, e.g., "heteroaralkyl," or "heteroaralkoxy," refer to groups having 5 to 10 ring atoms, preferably 5, 6, or 9 ring atoms; having 6, 10, or 14 Tc electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to five heteroatoms. The term "heteroatom" refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quaternized form of a basic nitrogen. Heteroaryl groups include, without limitation, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, indolizinyl, purinyl, naphthyridinyl, and pteridinyl. The terms "heteroaryl" and "heteroar-", as used herein, also include groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where the radical or point of attachment is on the heteroaromatic ring. Nonlimiting examples include indolyl, isoindolyl, benzothienyl, benzofuranyl, dibenzofuranyl, indazolyl, benzimidazolyl, benzthiazolyl, quinolyl, isoquinolyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, 4H-quinolizinyl, carbazolyl, acridinyl, phenazinyl, phenothiazinyl, phenoxazinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, and pyrido[2,3-b]-1,4-oxazin 3(4H)-one. A heteroaryl group may be mono- or bicyclic. The term "heteroaryl" may be used interchangeably with the terms "heteroaryl ring," "heteroaryl group," or "heteroaromatic," any of which terms include rings that are optionally substituted. The terms "heteroaralkyl" and "heteroarylalkyl" refer to an alkyl group substituted by a heteroaryl moiety, wherein the alkyl and heteroaryl portions independently are optionally substituted.
[0034] The term "heteroaliphatic," as used herein, means aliphatic groups wherein one or two carbon atoms are independently replaced by one or more of oxygen, sulfur, nitrogen, or phosphorus. Heteroaliphatic groups may be substituted or unsubstituted, branched or unbranched, cyclic or acyclic, and include "heterocycle," "hetercyclyl," "heterocycloaliphatic," or "heterocyclic" groups.
[0035] As used herein, the terms "heterocycle," "heterocyclyl," "heterocyclic radical," and "heterocyclic ring" are used interchangeably and refer to a stable 5- to 7-membered monocyclic or 7-10-membered bicyclic heterocyclic moiety that is either saturated or partially unsaturated, and having, in addition to carbon atoms, one or more, preferably one to four, heteroatoms, as defined above. When used in reference to a ring atom of a heterocycle, the term "nitrogen" includes a substituted nitrogen. As an example, in a saturated or partially unsaturated ring having -3 heteroatoms selected from oxygen, sulfur or nitrogen, the nitrogen may be N (as in 3,4 dihydro-2H-pyrrolyl), NH (as in pyrrolidinyl), or +NR (as in N-substituted pyrrolidinyl).
[0036] A heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure and any of the ring atoms can be optionally substituted. Examples of such saturated or partially unsaturated heterocyclic radicals include, without limitation, tetrahydrofuranyl, tetrahydrothiophenyl pyrrolidinyl, piperidinyl, pyrrolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, morpholinyl, and quinuclidinyl. The terms "heterocycle," "heterocyclyl," "heterocyclyl ring," "heterocyclic group," "heterocyclic moiety," and "heterocyclic radical," are used interchangeably herein, and also include groups in which a heterocyclyl ring is fused to one or more aryl, heteroaryl, or cycloaliphatic rings, such as indolinyl, 3H-indolyl, chromanyl, phenanthridinyl, or tetrahydroquinolinyl, where the radical or point of attachment is on the heterocyclyl ring. A heterocyclyl group may be mono- or bicyclic. The term "heterocyclylalkyl" refers to an alkyl group substituted by a heterocyclyl, wherein the alkyl and heterocyclyl portions independently are optionally substituted.
[0037] As used herein, the term "partially unsaturated" refers to a ring moiety that includes at least one double or triple bond. The term "partially unsaturated" is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aryl or heteroaryl moieties, as herein defined.
[0038] In another aspect, the present invention provides "pharmaceutically acceptable" compositions, which comprise a therapeutically effective amount of one or more of the compounds described herein, formulated together with one or more pharmaceutically acceptable carriers (additives) and/or diluents. As described in detail, the pharmaceutical compositions of the present invention may be specially formulated for administration in solid or liquid form, including those adapted for the following: oral administration, for example, drenches (aqueous or non-aqueous solutions or suspensions), tablets, e.g., those targeted for buccal, sublingual, and systemic absorption, boluses, powders, granules, pastes for application to the tongue; parenteral administration, for example, by subcutaneous, intramuscular, intravenous or epidural injection as, for example, a sterile solution or suspension, or sustained-release formulation; topical application, for example, as a cream, ointment, or a controlled-release patch or spray applied to the skin, lungs, or oral cavity; intravaginally or intrarectally, for example, as a pessary, cream or foam; sublingually; ocularly; transdermally; or nasally, pulmonary and to other mucosal surfaces.
[0039] The phrase "pharmaceutically acceptable" is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
[0040] The phrase "pharmaceutically acceptable carrier" as used herein means a pharmaceutically-acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, or solvent encapsulating material, involved in carrying or transporting the subject compound from one organ, or portion of the body, to another organ, or portion of the body. Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient. Some examples of materials which can serve as pharmaceutically-acceptable carriers include: sugars, such as lactose, glucose and sucrose; starches, such as corn starch and potato starch; cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients, such as cocoa butter and suppository waxes; oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; glycols, such as propylene glycol; polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; esters, such as ethyl oleate and ethyl laurate; agar; buffering agents, such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethyl alcohol; pH buffered solutions; polyesters, polycarbonates and/or polyanhydrides; and other non toxic compatible substances employed in pharmaceutical formulations.
[0041] As used herein, the term "pharmaceutically acceptable salt" refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. PharmaceuticalSciences, 1977, 66, 1-19, incorporated herein by reference. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like.
[0042] In other cases, the compounds of the present invention may contain one or more acidic functional groups and, thus, are capable of forming pharmaceutically-acceptable salts with pharmaceutically acceptable bases. The term "pharmaceutically acceptable salts" in these instances refers to the relatively non-toxic, inorganic and organic base addition salts of compounds of the present invention. These salts can likewise be prepared in situ in the administration vehicle or the dosage form manufacturing process, or by separately reacting the purified compound in its free acid form with a suitable base, such as the hydroxide, carbonate or bicarbonate of a pharmaceutically acceptable metal cation, with ammonia, or with a pharmaceutically acceptable organic primary, secondary, tertiary, or quaternary amine. Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N(C 4alkyl) 4 salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate. Representative organic amines useful for the formation of base addition salts include ethylamine, diethylamine, ethylenediamine, ethanolamine, diethanolamine, piperazine and the like. (See, for example, Berge et al., supra).
[0043] Unless otherwise stated, structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each stereocenter, Z and E double bond isomers, and Z and E conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
[0044] Provided compounds may comprise one or more saccharide moieties. Unless otherwise specified, both D- and L-configurations, and mixtures thereof, are within the scope of the invention. Unless otherwise specified, both a- and $-linked embodiments, and mixtures thereof, are contemplated by the present invention.
[0045] If, for instance, a particular enantiomer of a compound of the present invention is desired, it may be prepared by asymmetric synthesis, chiral chromatography, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers. Alternatively, where the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means well known in the art, and subsequent recovery of the pure enantiomers.
[0046] Additionally, unless otherwise stated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures including the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 3C- or "C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools, as probes in biological assays, or as therapeutic agents in accordance with the present invention.
[0047] One of ordinary skill in the art will appreciate that the synthetic methods, as described herein, utilize a variety of protecting groups. By the term "protecting group," as used herein, it is meant that a particular functional moiety, e.g., 0, S, or N, is masked or blocked, permitting, if desired, a reaction to be carried out selectively at another reactive site in a multifunctional compound. In preferred embodiments, a protecting group reacts selectively in good yield to give a protected substrate that is stable to the projected reactions; the protecting group is preferably selectively removable by readily available, preferably non-toxic reagents that do not attack the other functional groups; the protecting group forms a separable derivative (more preferably without the generation of new stereogenic centers); and the protecting group will preferably have a minimum of additional functionality to avoid further sites of reaction. As detailed herein, oxygen, sulfur, nitrogen, and carbon protecting groups may be utilized. By way of non-limiting example, hydroxyl protecting groups include methyl, methoxylmethyl (MOM), methylthiomethyl (MTM), t-butylthiomethyl, (phenyldimethylsilyl)methoxymethyl (SMOM), benzyloxymethyl (BOM), p-methoxybenzyloxymethyl (PMBM), (4-methoxyphenoxy)methyl (p AOM), guaiacolmethyl (GUM), t-butoxymethyl, 4-pentenyloxymethyl (POM), siloxymethyl, 2 methoxyethoxymethyl (MEM), 2,2,2-trichloroethoxymethyl, bis(2-chloroethoxy)methyl, 2 (trimethylsilyl)ethoxymethyl (SEMOR), tetrahydropyranyl (THP), 3-bromotetrahydropyranyl, tetrahydrothiopyranyl, 1-methoxycyclohexyl, 4-methoxytetrahydropyranyl (MTHP), 4 methoxytetrahydrothiopyranyl, 4-methoxytetrahydrothiopyranyl S,S-dioxide, 1-[(2-chloro-4 methyl)phenyl]-4-methoxypiperidin-4-yl (CTMP), 1,4-dioxan-2-yl, tetrahydrofuranyl, tetrahydrothiofuranyl, 2,3,3a,4,5,6,7,7a-octahydro-7,8,8-trimethyl-4,7-methanobenzofuran-2-yl, 1-ethoxyethyl, 1-(2-chloroethoxy)ethyl, 1-methyl-i-methoxyethyl, 1-methyl--benzyloxyethyl, 1-methyl-I-benzyloxy-2-fluoroethyl, 2,2,2-trichloroethyl, 2-trimethylsilylethyl, 2 (phenylselenyl)ethyl, t-butyl, allyl, p-chlorophenyl, p-methoxyphenyl, 2,4-dinitrophenyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, o-nitrobenzyl,p-nitrobenzyl,p-halobenzyl, 2,6 dichlorobenzyl, p-cyanobenzyl, p-phenylbenzyl, 2-picolyl, 4-picolyl, 3-methyl-2-picolyl N oxido, diphenylmethyl,p,p'-dinitrobenzhydryl, 5-dibenzosuberyl, triphenylmethyl, a naphthyldiphenylmethyl, p-methoxyphenyldiphenylmethyl, di(p-methoxyphenyl)phenylmethyl, tri(p-methoxyphenyl)methyl, 4-(4'-bromophenacyloxyphenyl)diphenylmethyl, 4,4',4"-tris(4,5 dichlorophthalimidophenyl)methyl, 4,4',4"-tris(levulinoyloxyphenyl)methyl, 4,4',4" tris(benzoyloxyphenyl)methyl, 3-(imidazol-1-yl)bis(4',4"-dimethoxyphenyl)methyl, 1,1-bis(4 methoxyphenyl)-l'-pyrenylmethyl, 9-anthryl, 9-(9-phenyl)xanthenyl, 9-(9-phenyl-10 oxo)anthryl, 1,3-benzodithiolan-2-yl, benzisothiazolyl S,S-dioxido, trimethylsilyl (TMS), triethylsilyl (TES), triisopropylsilyl (TIPS), dimethylisopropylsilyl (IPDMS), diethylisopropylsilyl (DEIPS), dimethylthexylsilyl, t-butyldimethylsilyl (TBDMS), t butyldiphenylsilyl (TBDPS), tribenzylsilyl, tri-p-xylylsilyl, triphenylsilyl, diphenylmethylsilyl (DPMS), t-butylmethoxyphenylsilyl (TBMPS), formate, benzoylformate, acetate, chloroacetate, dichloroacetate, trichloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, phenoxyacetate,p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate (levulinate), 4,4
(ethylenedithio)pentanoate (levulinoyldithioacetal), pivaloate, adamantoate, crotonate, 4 methoxycrotonate, benzoate,p-phenylbenzoate, 2,4,6-trimethylbenzoate (mesitoate), alkyl methyl carbonate, 9-fluorenylmethyl carbonate (Fmoc), alkyl ethyl carbonate, alkyl 2,2,2 trichloroethyl carbonate (Troc), 2-(trimethylsilyl)ethyl carbonate (TMSEC), 2-(phenylsulfonyl) ethyl carbonate (Psec), 2-(triphenylphosphonio) ethyl carbonate (Peoc), alkyl isobutyl carbonate, alkyl vinyl carbonate alkyl allyl carbonate, alkylp-nitrophenyl carbonate, alkyl benzyl carbonate, alkylp-methoxybenzyl carbonate, alkyl 3,4-dimethoxybenzyl carbonate, alkyl o-nitrobenzyl carbonate, alkyl p-nitrobenzyl carbonate, alkyl S-benzyl thiocarbonate, 4-ethoxy-1-napththyl carbonate, methyl dithiocarbonate, 2-iodobenzoate, 4-azidobutyrate, 4-nitro-4-methylpentanoate, o-(dibromomethyl)benzoate, 2-formylbenzenesulfonate, 2-(methylthiomethoxy)ethyl, 4 (methylthiomethoxy)butyrate, 2-(methylthiomethoxymethyl)benzoate, 2,6-dichloro-4 methylphenoxyacetate, 2,6-dichloro-4-(1,1,3,3-tetramethylbutyl)phenoxyacetate, 2,4-bis(1,1 dimethylpropyl)phenoxyacetate, chlorodiphenylacetate, isobutyrate, monosuccinoate, (E)-2 methyl-2-butenoate, o-(methoxycarbonyl)benzoate, a-naphthoate, nitrate, alkyl N,N,N',N' tetramethylphosphorodiamidate, alkyl N-phenylcarbamate, borate, dimethylphosphinothioyl, alkyl 2,4-dinitrophenylsulfenate, sulfate, methanesulfonate (mesylate), benzylsulfonate, and tosylate (Ts). For protecting 1,2- or 1,3-diols, the protecting groups include methylene acetal, ethylidene acetal, 1-t-butylethylidene ketal, 1-phenylethylidene ketal, (4 methoxyphenyl)ethylidene acetal, 2,2,2-trichloroethylidene acetal, acetonide, cyclopentylidene ketal, cyclohexylidene ketal, cycloheptylidene ketal, benzylidene acetal, p-methoxybenzylidene acetal, 2,4-dimethoxybenzylidene ketal, 3,4-dimethoxybenzylidene acetal, 2-nitrobenzylidene acetal, methoxymethylene acetal, ethoxymethylene acetal, dimethoxymethylene ortho ester, 1 methoxyethylidene ortho ester, 1-ethoxyethylidine ortho ester, 1,2-dimethoxyethylidene ortho ester, a-methoxybenzylidene ortho ester, 1-(NN-dimethylamino)ethylidene derivative, a-(NN' dimethylamino)benzylidene derivative, 2-oxacyclopentylidene ortho ester, di-t-butylsilylene group (DTBS), 1,3-(1,1,3,3-tetraisopropyldisiloxanylidene) derivative (TIPDS), tetra-t butoxydisiloxane-1,3-diylidene derivative (TBDS), cyclic carbonates, cyclic boronates, ethyl boronate, and phenyl boronate. Amino-protecting groups include methyl carbamate, ethyl carbamante, 9-fluorenylmethyl carbamate (Fmoc), 9-(2-sulfo)fluorenylmethyl carbamate, 9-(2,7 dibromo)fluoroenylmethyl carbamate, 2,7-di-t-butyl-[9-(10,10-dioxo-10,10,10,10 tetrahydrothioxanthyl)]methyl carbamate (DBD-Tmoc), 4-methoxyphenacyl carbamate (Phenoc), 2,2,2-trichloroethyl carbamate (Troc), 2-trimethylsilylethyl carbamate (Teoc), 2 phenylethyl carbamate (hZ), 1-(1-adamantyl)-1-methylethyl carbamate (Adpoc), 1,1-dimethyl-2 haloethyl carbamate, 1,1-dimethyl-2,2-dibromoethyl carbamate (DB-t-BOC), 1,1-dimethyl-2,2,2 trichloroethyl carbamate (TCBOC), 1-methyl-I-(4-biphenylyl)ethyl carbamate (Bpoc), 1-(3,5-di t-butylphenyl)-1-methylethyl carbamate (t-Bumeoc), 2-(2'- and 4'-pyridyl)ethyl carbamate (Pyoc), 2-(NN-dicyclohexylcarboxamido)ethyl carbamate, t-butyl carbamate (BOC), 1 adamantyl carbamate (Adoc), vinyl carbamate (Voc), allyl carbamate (Alloc), 1-isopropylallyl carbamate (Ipaoc), cinnamyl carbamate (Coc), 4-nitrocinnamyl carbamate (Noc), 8-quinolyl carbamate, N-hydroxypiperidinyl carbamate, alkyldithio carbamate, benzyl carbamate (Cbz), p methoxybenzyl carbamate (Moz), p-nitobenzyl carbamate, p-bromobenzyl carbamate, p chlorobenzyl carbamate, 2,4-dichlorobenzyl carbamate, 4-methylsulfinylbenzyl carbamate (Msz), 9-anthrylmethyl carbamate, diphenylmethyl carbamate, 2-methylthioethyl carbamate, 2 methylsulfonylethyl carbamate, 2-(p-toluenesulfonyl)ethyl carbamate, [2-(1,3-dithianyl)]methyl carbamate (Dmoc), 4-methylthiophenyl carbamate (Mtpc), 2,4-dimethylthiophenyl carbamate (Bmpc), 2-phosphonioethyl carbamate (Peoc), 2-triphenylphosphonioisopropyl carbamate (Ppoc), 1,1-dimethyl-2-cyanoethyl carbamate, m-chloro-p-acyloxybenzyl carbamate,p (dihydroxyboryl)benzyl carbamate, 5-benzisoxazolylmethyl carbamate, 2-(trifluoromethyl)-6 chromonylmethyl carbamate (Tcroc), m-nitrophenyl carbamate, 3,5-dimethoxybenzyl carbamate, o-nitrobenzyl carbamate, 3,4-dimethoxy-6-nitrobenzyl carbamate, phenyl(o-nitrophenyl)methyl carbamate, phenothiazinyl-(10)-carbonyl derivative, N'-p-toluenesulfonylaminocarbonyl derivative, N'-phenylaminothiocarbonyl derivative, t-amyl carbamate, S-benzyl thiocarbamate, p-cyanobenzyl carbamate, cyclobutyl carbamate, cyclohexyl carbamate, cyclopentyl carbamate, cyclopropylmethyl carbamate, p-decyloxybenzyl carbamate, 2,2-dimethoxycarbonylvinyl carbamate, o-(NN-dimethylcarboxamido)benzyl carbamate, 1,1-dimethyl-3-(NN dimethylcarboxamido)propyl carbamate, 1,1-dimethylpropynyl carbamate, di(2-pyridyl)methyl carbamate, 2-furanylmethyl carbamate, 2-iodoethyl carbamate, isoborynl carbamate, isobutyl carbamate, isonicotinyl carbamate, p-(p'-methoxyphenylazo)benzyl carbamate, 1 methylcyclobutyl carbamate, 1-methylcyclohexyl carbamate, 1-methyl-I-cyclopropylmethyl carbamate, 1-methyl-1-(3,5-dimethoxyphenyl)ethyl carbamate, 1-methyl-I-(p phenylazophenyl)ethyl carbamate, 1-methyl-I-phenylethyl carbamate, 1-methyl-1-(4 pyridyl)ethyl carbamate, phenyl carbamate, p-(phenylazo)benzyl carbamate, 2,4,6-tri-t butylphenyl carbamate, 4-(trimethylammonium)benzyl carbamate, 2,4,6-trimethylbenzyl carbamate, formamide, acetamide, chloroacetamide, trichloroacetamide, trifluoroacetamide, phenylacetamide, 3-phenylpropanamide, picolinamide, 3-pyridylcarboxamide, N benzoylphenylalanyl derivative, benzamide, p-phenylbenzamide, o-nitophenylacetamide, o nitrophenoxyacetamide, acetoacetamide, (N'-dithiobenzyloxycarbonylamino)acetamide, 3-(p hydroxyphenyl)propanamide, 3-(o-nitrophenyl)propanamide, 2-methyl-2-(o nitrophenoxy)propanamide, 2-methyl-2-(o-phenylazophenoxy)propanamide, 4 chlorobutanamide, 3-methyl-3-nitrobutanamide, o-nitrocinnamide, N-acetylmethionine derivative, o-nitrobenzamide, o-(benzoyloxymethyl)benzamide, 4,5-diphenyl-3-oxazolin-2-one, N-phthalimide, N-dithiasuccinimide (Dts), N-2,3-diphenylmaleimide, N-2,5-dimethylpyrrole, N 1,1,4,4-tetramethyldisilylazacyclopentane adduct (STABASE), 5-substituted 1,3-dimethyl-1,3,5 triazacyclohexan-2-one, 5-substituted 1,3-dibenzyl-1,3,5-triazacyclohexan-2-one, 1-substituted 3,5-dinitro-4-pyridone, N-methylamine, N-allylamine, N-[2-(trimethylsilyl)ethoxy]methylamine (SEM), N-3-acetoxypropylamine, N-(1-isopropyl-4-nitro-2-oxo-3-pyroolin-3-yl)amine, quaternary ammonium salts, N-benzylamine, N-di(4-methoxyphenyl)methylamine, N-5 dibenzosuberylamine, N-triphenylmethylamine (Tr), N-[(4 methoxyphenyl)diphenylmethyl]amine (MMTr), N-9-phenylfluorenylamine (PhF), N-2,7 dichloro-9-fluorenylmethyleneamine, N-ferrocenylmethylamino (Fcm), N-2-picolylamino N' oxide, N-1,1-dimethylthiomethyleneamine, N-benzylideneamine, N-p methoxybenzylideneamine, N-diphenylmethyleneamine, N-[(2-pyridyl)mesityl]methyleneamine, N-(N',N'-dimethylaminomethylene)amine, N,N'-isopropylidenediamine, N-p nitrobenzylideneamine, N-salicylideneamine, N-5-chlorosalicylideneamine, N-(5-chloro-2 hydroxyphenyl)phenylmethyleneamine, N-cyclohexylideneamine, N-(5,5-dimethyl-3-oxo-1 cyclohexenyl)amine, N-borane derivative, N-diphenylborinic acid derivative, N
[phenyl(pentacarbonylchromium- or tungsten)carbonyl]amine, N-copper chelate, N-zinc chelate, N-nitroamine, N-nitrosoamine, amine N-oxide, diphenylphosphinamide (Dpp), dimethylthiophosphinamide (Mpt), diphenylthiophosphinamide (Ppt), dialkyl phosphoramidates, dibenzyl phosphoramidate, diphenyl phosphoramidate, benzenesulfenamide, o nitrobenzenesulfenamide (Nps), 2,4-dinitrobenzenesulfenamide, pentachlorobenzenesulfenamide, 2-nitro-4-methoxybenzenesulfenamide, triphenylmethylsulfenamide, 3-nitropyridinesulfenamide (Npys),p-toluenesulfonamide (Ts), benzenesulfonamide, 2,3,6,-trimethyl-4-methoxybenzenesulfonamide (Mtr), 2,4,6 trimethoxybenzenesulfonamide (Mtb), 2,6-dimethyl-4-methoxybenzenesulfonamide (Pme), 2,3,5,6-tetramethyl-4-methoxybenzenesulfonamide (Mte), 4-methoxybenzenesulfonamide (Mbs), 2,4,6-trimethylbenzenesulfonamide (Mts), 2,6-dimethoxy-4-methylbenzenesulfonamide (iMds), 2,2,5,7,8-pentamethylchroman-6-sulfonamide (Pme), methanesulfonamide (Ms),3 trimethylsilylethanesulfonamide (SES), 9-anthracenesulfonamide, 4-(4',8' dimethoxynaphthylmethyl)benzenesulfonamide (DNMBS), benzylsulfonamide, trifluoromethylsulfonamide, and phenacylsulfonamide. Exemplary protecting groups are detailed herein, however, it will be appreciated that the present invention is not intended to be limited to these protecting groups; rather, a variety of additional equivalent protecting groups can be readily identified using the above criteria and utilized in the method of the present invention. Additionally, a variety of protecting groups are described by Greene and Wuts (supra).
[0048] As described herein, compounds of the invention may contain "optionally substituted" moieties. In general, the term "substituted," whether preceded by the term "optionally" or not, means that one or more hydrogens of the designated moiety are replaced with a suitable substituent. Unless otherwise indicated, an "optionally substituted" group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds. The term "stable," as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.
[0049] Suitable monovalent substituents on a substitutable carbon atom of an "optionally substituted" group are independently halogen; -(CH 2)o- 4R°; -(CH 2)o-40R°; -O(CH 2)o 4R°, -0 (CH2)o- 4C(O)OR°; -(CH 2 )o-4 CH(OR°) 2 ; -(CH 2)o-4SR°; -(CH 2)o- 4Ph, which may be substituted with R°; -(CH 2 )o-40(CH 2 )o-Ph which may be substituted with R°; -CH=CHPh, which may be substituted with R°; -(CH 2)o-40(CH 2)o-1-pyridyl which may be substituted with R°; -NO 2 ; -CN; -N 3 ; -(CH 2)o- 4N(R°) 2; -(CH 2)o- 4N(R°)C(O)R°; -N(R°)C(S)R°; -(CH 2)o- 4N(R°)C(O)NR 2;
-N(R°)C(S)NR0 2; -(CH 2)o- 4N(R°)C(O)OR°; -N(R°)N(R°)C(O)R°; -N(R°)N(R°)C(O)NR 2; -N(R°)N(R°)C(O)OR°; -(CH 2)o- 4C(O)R°; -C(S)R°; -(CH 2 )o- 4 C(O)OR°; -(CH 2)- 4C(O)SR°; -(CH2 )o- 4 C(O)OSiR° 3 ; -(CH 2)o-40C(O)R°; -OC(O)(CH 2)0- 4SR-, SC(S)SR°; -(CH 2)- 4SC(O)R°;
-(CH 2 )o-4C(O)NR 0 2 ; -C(S)NR 0 2 ; -C(S)SR°; -SC(S)SR°, -(CH 2)-40C(O)NR 2;
-C(O)N(OR°)R°; -C(O)C(O)R°; -C(O)CH 2C(O)R°; -C(NOR°)R°; -(CH 2)o-4SSR°; -(CH 2 )
4 S(O) 2 R°; -(CH 2 )o- 4 S(O) 2 0R°; -(CH 2 )o-40S(O) 2 R°; -S(O) 2NR 2; -(CH 2)o-4 S(O)R°;
-N(R°)S(O)2NR 2 ; -N(R°)S(O) 2R°; -N(OR°)R°; -C(NH)NR 0 2; -P(O) 2 R°; -P(O)R° 2; -OP(O)R° 2 ; -OP(O)(OR°) 2; SiR° 3 ; -(CI-4 straight or branched alkylene)O-N(R°) 2; or -(CI-4 straight or
branched alkylene)C(O)O-N(R°) 2 , wherein each R° may be substituted as defined below and is independently hydrogen, C1-6 aliphatic, -CH 2Ph, -O(CH 2)o-1 Ph, -CH 2-(5-6-membered heteroaryl ring), or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R°, taken together with their intervening atom(s), form a 3-12-membered saturated, partially unsaturated, or aryl mono- or bicyclic ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, which may be substituted as defined below.
[0050] Suitable monovalent substituents on R° (or the ring formed by taking two independent occurrences of R° together with their intervening atoms), are independently halogen, -(CH 2)
2 R°, -(haloR'), -(CH 2) 0- 20H, -(CH 2) 0-20R*, -(CH 2 )o-2 CH(OR') 2 ; -O(haloR'), -CN, -N 3, (CH2) 0- 2 C(O)R*, -(CH 2) 0- 2 C(O)OH, -(CH 2 ) 0- 2 C(O)OR*, -(CH 2)0-2SR*, -(CH 2)- 2 SH, -(CH 2)
2 NH 2 , -(CH 2)o- 2NHR*, -(CH 2 )o- 2 NR*2 , -NO2 , -SiR° 3 , -OSiR° 3, -C(O)SR*, -(C 1 -4 straight or branched alkylene)C(O)OR*, or -SSR* wherein each R' is unsubstituted or where preceded by "halo" is substituted only with one or more halogens, and is independently selected from C1 4 aliphatic, -CH 2Ph, -O(CH 2)o- 1Ph, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suitable divalent substituents on a saturated carbon atom of R° include =0 and =S.
[0051] Suitable divalent substituents on a saturated carbon atom of an "optionally substituted" group include the following: =0, =S, =NNR* 2 , =NNHC(O)R*, =NNHC(O)OR*, =NNHS(O) 2R*, =NR*, =NOR*, -O(C(R 2 )) 2 -30-, or -S(C(R* 2))2-3S-, wherein each independent occurrence of
R* is selected from hydrogen, C 1 _ 6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suitable divalent substituents that are bound to vicinal substitutable carbons of an "optionally substituted" group include: -O(CR* 2) 2- 30-, wherein each independent occurrence of R* is selected from hydrogen,
C 1 _6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0052] Suitable substituents on the aliphatic group of R* include halogen, -R*, -(haloR*), -OH, OR', -O(haloR*), -CN, -C(O)OH, -C(O)OR, -NH 2 ,-NHR,-NR°2, or -NO 2 , wherein each R' is unsubstituted or where preceded by "halo" is substituted only with one or more halogens, and is independently C1 _4 aliphatic, -CH 2Ph, -O(CH 2)o- 1Ph, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0053] Suitable substituents on a substitutable nitrogen of an "optionally substituted" group include -Rt, -NR 2, -C(O)Rt, -C(O)OR, -C(O)C(O)R, -C(O)CH 2C(O)R, -S(O) 2 R, -S(O)2NR 2 , -C(S)NR 2, -C(NH)NR 2, or N(R)S(O) 2 R;wherein each Rt is independently hydrogen, C 1_ 6 aliphatic which may be substituted as defined below, unsubstituted -OPh, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R, taken together with their intervening atom(s) form an unsubstituted 3-12-membered saturated, partially unsaturated, or aryl mono- or bicyclic ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suitable substituents on the aliphatic group of Rt are independently halogen, -R*, -(haloR*), OH, -OR*, -O(haloR*), -CN, -C(O)OH, -C(O)OR, -NH 2 ,-NHR,-NR° 2, or -NO 2 , wherein each R' is unsubstituted or where preceded by "halo" is substituted only with one or more halogens, and is independently C 1 _4 aliphatic, -CH 2 Ph, -O(CH 2)o-1 Ph, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0054] The phrases "parenteral administration" and "administered parenterally" as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticulare, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
[0055] The phrases "systemic administration," "administered systemically," "peripheral administration" and "administered peripherally" as used herein mean the administration of a compound, drug or other material other than directly into the central nervous system, such that it enters the patient's system and, thus, is subject to metabolism and other like processes, for example, subcutaneous administration.
[0056] The term "enriched" as used herein refers to a mixture having an increased proportion of one or more species. In some embodiments, the mixture is "enriched" following a process that increases the proportion of one or more desired species in the mixture. In some embodiments, the desired species comprise(s) greater than 10% of the mixture. In some embodiments, the desired species comprise(s) greater than 25% of the mixture. In some embodiments, the desired species comprise(s) greater than 40% of the mixture. In some embodiments, the desired species comprise(s) greater than 60% of the mixture. In some embodiments, the desired species comprise(s) greater than 75% of the mixture. In some embodiments, the desired species comprise(s) greater than 85% of the mixture. In some embodiments, the desired species comprise(s) greater than 90% of the mixture. In some embodiments, the desired species comprise(s) greater than 95% of the mixture. Such proportions can be measured any number of ways, for example, as a molar ratio, volume to volume, or weight to weight.
[0057] The term "pure" refers to compounds that are substantially free of compounds of related non-target structure or chemical precursors (when chemically synthetized). This quality may be measured or expressed as "purity." In some embodiments, a target compound has less than about 30%, 20%, 10%, 5%, 2%, 1%, 0.5%, and 0.1% of non-target structures or chemical precursors. In certain embodiments, a pure compound of present invention is only one prosapogenin compound (i.e., separation of target prosapogenin from other prosapogenins).
[0058] The term "carbohydrate" refers to a sugar or polymer of sugars. The terms "saccharide", "polysaccharide", "carbohydrate", and "oligosaccharide", may be used interchangeably. Most carbohydrates are aldehydes or ketones with many hydroxyl groups, usually one on each carbon atom of the molecule. Carbohydrates generally have the molecular formula CnH2nOn. A carbohydrate may be a monosaccharide, a disaccharide, trisaccharide, oligosaccharide, or polysaccharide. The most basic carbohydrate is a monosaccharide, such as glucose, sucrose, galactose, mannose, ribose, arabinose, xylose, and fructose. Disaccharides are two joined monosaccharides. Exemplary disaccharides include sucrose, maltose, cellobiose, and lactose. Typically, an oligosaccharide includes between three and six monosaccharide units (e.g., raffinose, stachyose), and polysaccharides include six or more monosaccharide units. Exemplary polysaccharides include starch, glycogen, and cellulose. Carbohydrates may contain modified saccharide units such as 2'-deoxyribose wherein a hydroxyl group is removed, 2'-fluororibose wherein a hydroxyl group is replace with a fluorine, or N-acetylglucosamine, a nitrogen containing form of glucose. (e.g., 2'-fluororibose, deoxyribose, and hexose). Carbohydrates may exist in many different forms, for example, conformers, cyclic forms, acyclic forms, stereoisomers, tautomers, anomers, and isomers.
BRIEF DESCRIPTION OF THE DRAWINGS
[0059] Figure la depicts the chemical structure of QS-7-Api.
[0060] Figure lb depicts the chemical structures of QS-21-Api and QS-21-Xyl. Percentages correspond to the natural abundance of each isomer in isolated extracts of QS-21.
[0061] Figures 2a-c show Anti-GD3 and Anti-KLH antibody titers after vaccination with GD3 KLH conjugate (10 pg) with adjuvants NQS-21, SQS-21-Mix, SQS-21-Api, or SQS-21-Xyl each at 20 pg doses. Each value represents median value of five mice (sera tested 7 days after 3rd and 4th vaccination). NQS-21 = naturally derived QS-21; SQS-21-Mix = synthetic QS-21.
[0062] Figure 3 shows a comparison of cell surface reactivity against cell line SK-Mel-28 between vaccinations with various SQS-adjuvants at 20 pg doses.
[0063] Figure 4 depicts a toxicity study in C57BL/6J Female Mice injected with GD3-KLH (10 ptg) plus SQS-21-Mix, SQS-21-Api, or SQS-21-Xyl (20 pg each), compared to that with no adjuvant or natural NQS-21 (20 pg).
[0064] Figure 5 shows the results on adjuvant activity of synthetic SQS-analogues employing GD3-KLH antigen. Antibody-titers are median values of groups of five mice, wherein adjuvant dose is 10 pg. SQS-7 = synthetic QS-7-Api. SQS-0101 = compound 1-9; SQS-0102= compound I-10; SQS-0103 = compound 1-8.
[0065] Figures 6-14 show1 H-NMR spectra of compounds described herein.
[0066] Figures 15a-b are high-performance liquid chromatography traces of a 1:1 mixture of natural and semisynthetic QS-7-Api.
DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS
[0067] The clinical success of anticancer and antimicrobial vaccines critically depends on the identification of, and access to, novel potent adjuvants with attenuated toxicity. In this context, specific fractions from extracts of the bark of Quillajasaponaria(QS) have proven to be exceedingly powerful adjuvants in immunotherapy. The QS-21 fraction (Kensil, C. R.; Patel, U.; Lennick, M.; Marciani, D. J. Immunol. 1991, 146, 431-437), comprising isomeric forms of a complex triterpene glycoside saponin (Soltysik, S.; Wu, J. Y.; Recchia, J.; Wheeler, D. A.; Newman, M. J.; Coughlin, R. T.; Kensil, C. R. Vaccine 1995,13,1403-1410; Kensil, C. R. Crit. Rev. Ther. Drug CarrierSyst. 1996, 13, 1-55), is currently the most promising immuno potentiator (Kim, S. K.; Ragupathi, G.; Musselli, C.; Choi, S. J.; Park, Y. S.; Livingston, P. 0. Vaccine 2000, 18, 597-603) in several antitumor (melanoma, breast, small cell lung cancer, prostate) (Livingston, P. 0.; Ragupathi, G. Hum. Vaccines 2006, 2, 137-143) and infectious disease (HIV, malaria) vaccine therapies (Sasaki, S.; Sumino, K.; Hamajima, K.; Fukushima, J.; Ishii, N.; Kawamoto, S.; Mohri, H.; Kensil, C. R.; Okuda, K. J. Virol. 1998, 72, 4931-4939; Evans, T. G., et al. Vaccine 2001, 19, 2080-2091; Kashala, 0., et al. Vaccine 2002, 20, 2263 2277; Carcaboso, A. M.; Hernandez, R. M.; Igartua, M.; Rosas, J. E.; Patarroyo, M. E.; Pedraz, J. L. Vaccine 2004, 22, 1423-1432). However, the tolerated dose of QS-21 in cancer patients typically does not exceed 100 pg, above which significant local erythema and systemic flu-like symptoms arise. On the other hand, QS-7, another QS extract fraction, was found not only to possess significant stand-alone adjuvant activity (Kensil, 1991; Kensil, 1998, supra), but also to induce remarkable synergistic immune response augmentation (Kensil, C. A., U.S. Pat. No. 6,231,859) when co-administered with QS-21, allowing for the administration of less QS-21. Importantly, QS-7, unlike QS-21, exhibited negligible toxicity in mice. The present invention provides an efficient semi-synthetic method of synthesizing analogs of QS-7 and QS-21, thereby signficantly reducing the number of synthetic steps required to access this potent class of adjuvants.
Compounds
[0068] Compounds of this invention include those described generally above, and are further illustrated by the classes, subclasses, and species disclosed herein. In some embodiments, provided compounds are analogs of naturally occurring triterpene glycoside saponins and intermediates thereto. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 7 5 th Ed. Additionally, general principles of organic chemistry are described in Organic Chemistry, Thomas Sorrell, University Science Books, Sausalito: 1999, and March'sAdvanced Organic Chemistry, 5th Ed., Ed.: Smith, M.B. and March, J., John Wiley & Sons, New York: 2001, the entire contents of which are hereby incorporated by reference.
DescriptionofExemplarv Compounds
[0069] In some embodiments, provided compounds are analogs of Quillajasaponins. In some embodiments, provided compounds are prosapogenins. In certain embodiments, provided compounds are analogs of QS-7 and QS-21 and possess potent adjuvant activity.
[0070] In certain embodiments, the present invention provides a compound of formula I:
0 Y-Z Me Me H RY(O)C Me H RxO O L 0 W H Me V 'Me Me H H RxORXRYORx OX
RxO
or a pharmaceutically acceptable salt thereof, wherein:
is a single or double bond; RX'O ORX'
W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR, Y is CH2 , -0-, -NR-, or -NH Z is hydrogen; a cyclic or acyclic, optionally substituted moiety selected from the group
consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, and heteroaryl; or a carbohydrate
domain having the structure:
O 0 R3 101 R0 R or OR'
wherein:
each occurrence of R 1 is Rx or a carbohydrate domain having the structure:
R' Rd
RGR
Rb bR - -d
wherein:
each occurrence of a, b, and c is independently 0, 1, or 2; d is an integer from 1-5, wherein each d bracketed structure may be the same or different; with the proviso that the d bracketed structure represents a furanose or pyranose moiety, and the sum of b and c is 1 or 2; R° is hydrogen, an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1_10 aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R', and Rd is independently hydrogen, halogen, OH, OR, OR, NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R 2 is hydrogen, halogen, OH, OR, OR', OC(O)R 4, OC(O)OR 4, OC(O)NHR 4 , OC(O)NRR 4
, OC(O)SR 4, NHC(O)R 4 , NRC(O)R 4, NHC(O)OR4 , NHC(O)NHR 4 ,NHC(O)NRR4
, N(R 4) 2 , NHR 4, NRR 4 , N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic, C 1_ 6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R3 is hydrogen, halogen, CH 2OR', or an optionally substituted group selected from the group consisting of acyl, CI_1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
X OR1
OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C1 -26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR , -SR, -NR2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1 6_ aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates. Ry is -OH, or a carboxyl protecting group selected from the group consisting of esters, amides, and hydrazides;
RxO
RXO RxO
Rs is ORX or RxOMe
each occurrence of Rx is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur. Rx'O ORx'
[0071] As defined above, W is Me, -CHO, I , -CH2 OR, or -C(O)ORY. In certain embodiments, W is methyl. In other embodiments, W is -CHO. In certain embodiments, W is -CH2 OR. In other embodiments, W is -C(O)ORY. In some embodiments, W is -CH2 OH. In other embodiments, W is -CH 20Bn. In other embodiments, W is -CH 20SiEt 3 . In certain embodiments, W is -C(O)OH. In other embodiments, W is -C(O)OBn.
[0072] In certain embodiments, V is -OR. In some embodiments, V is -OH. In some embodiments, V is hydrogen.
[0073] As defined above, --- represents a single or double bond. It will be appreciated that compounds of formula I can be subjected to hydrogenation conditions (infra) that reduce the double bond to a single bond.
[0074] As defined above, Y is CH 2 , -0-, -NR-, or -NH-. In certain embodiments, Y is CH 2 . In certain embodiments, Y is -0-. In other embodiments, Y is -NR-. In some embodiments, Y is -NH-.
[0075] In certain embodiments, Z is hydrogen; a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, heterocyclyl, and heteroaryl.
[0076] In some embodiments, Z comprises a carbohydrate. In some embodiments, Z is not hydrogen. In other embodiments, Z is acyl.
[0077] In some embodiments, a Z comprises a linker group that separates a carbohydrate from Y. In some embodiments, the linker group is an optionally substituted, straight or branched C1-12 aliphatic or heteroaliphatic group. In some embodiments, the linker group is -(CH2)k-, wherein k is an integer between 1 and 10, inclusive.
[0078] In some embodiments, Z is an optionally substituted aliphatic group. In some embodiments, Z is an optionally substituted C 1_ 30 aliphatic group. In some embodiments, Z is an optionally substituted C 1-20 aliphatic group. In some embodiments, Z is an optionally substituted C 1_ 16 aliphatic group. In some embodiments, Z is an optionally substituted C1-12 aliphatic group. In some embodiments, Z is an optionally substituted C1_10 aliphatic group. In some embodiments, Z is an optionally substituted C 1 6 aliphatic group. In some embodiments, Z is an optionally substituted C 2-12 aliphatic group.
[0079] In some embodiments, Z is an optionally substituted heteroaliphatic group. In some embodiments, Z is an optionally substituted C1_30 heteroaliphatic group. In some embodiments, Z is an optionally substituted C1 -20 heteroaliphatic group. In some embodiments, Z is an optionally substituted C 1 16 heteroaliphatic group. In some embodiments, Z is an optionally substituted C 1- 12 heteroaliphatic group. In some embodiments, Z is an optionally substituted C1_ heteroaliphatic group. In some embodiments, Z is an optionally substituted C1_6 heteroaliphatic group. In some embodiments, Z is an optionally substituted C 2-12 heteroaliphatic group.
[0080] In certain embodiments, Z is an optionally substituted heteroaryl group having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. In certain embodiments, Z is is an optionally substituted 5-12-membered heteroaryl group. In certain embodiments, Z is is an optionally substituted 5-10-membered heteroaryl group. In certain embodiments, Z is is an optionally substituted 6-8-membered heteroaryl group.
[0081] In certain embodiments, Z is an optionally substituted aryl group. In certain embodiments, Z is is an optionally substituted 6-12-membered aryl group. In certain embodiments, Z is is an optionally substituted 6-10-membered aryl group. In certain embodiments, Z is is an optionally substituted 6-8-membered aryl group.
[0082] In some embodiments, Z is an optionally substituted heterocyclyl group. In certain embodiments, Z is an optionally substituted 4-7-membered heterocyclyl group having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
[0083] In some embodiments, Z is an optionally substituted arylalkyl group. In some embodiments, Z is an optionally substituted C7 - 12 arylalkyl group. In some embodiments, Z is an optionally substituted C 7 _ 10 arylalkyl group. In some embodiments, Z is an optionally substituted C7 _8 arylalkyl group.
[0084] In some embodiments, Z is a monosaccharide. In some embodiments, Z is an oligosaccharide. In certain embodiments, Z is a carbohydrate domain having the structure:
R- R IO 0 R3 10R R 10
R2 or OR'
wherein each of R , R 2, and R3 is defined as described in classes and subclasses above and herein.
[0085] In certain embodiments, Z has the structure:
R' Rd
b Ra Rb
0 a b c d wherein each of R°, Ra, Rb, R°, R , a, b, c, and d is defined as described in classes and
subclasses above and herein.
[0086] As described above, the Z moiety is linked to the triterpene core via Y. In some embodiments, Z is a monosaccharide and is D-fucosyl. In some embodiments, Z is a monosaccharide and is L-fucosyl. In some embodiments, Z is a monosaccharide and is not fucosyl. In some embodiments, Z is a monosaccharide and is not $-D-fucosyl.
[0087] In some embodiments, Z is an oligosaccharide, and the carbohydrate domain directly attached to Y is fucosyl. In some embodiments, Z is an oligosaccharide, and the carbohydrate domain directly attached to Y is not D-fucosyl. In some embodiments, Z is an oligosaccharide, and the carbohydrate domain directly attached to Y is not $-D-fucosyl. In some embodiments, Z is an oligosaccharide, and the carbohydrate domain directly attached to Y is not a-D-fucosyl. In some embodiments, Z is an oligosaccharide, and the carbohydrate domain directly attached to Y is not fucosyl.
[0088] In some embodiments, Z is an optionally substituted monosaccharide and is D-fucosyl. In some embodiments, Z is an optionally substituted monosaccharide and is L-fucosyl. In some embodiments, Z is an optionally substituted monosaccharide and is not $-D-fucosyl. In some embodiments, when a carbohydrate domain of Z is directly attached to Y, the carbohydrate domain directly attached to Y is not fucosyl. In certain embodiments, when Y-Z is -OH, -OMe, or -Oallyl, at least seven R groups are silyl ethers. In some embodiments, Z and Rx are not all simulataneously hydrogen or methyl. In some embodiments, Y-Z is not -OMe. In some embodiments, Y-Z is not -OH. In some embodiments, Y-Z is not -Oallyl. In some embodiments, Y-Z is not -OH or -OMe if all R groups are simultaneously hydrogen or if at least four Rx groups are simultaneously methyl.
[0089] In some embodiments, Ry is not a lipophilic group. In some embodiments, when a carbohydrate moiety of Z is non-acylated and all R are simulataneously hydrogen, the 3-0 glucuronic acid residue of the triterpene is not covalently attached, directly or indirectly, to a compound having a lipophilic domain, wherein the lipophilic domain is attached via the carboxylic acid carbon atom present on the 3-0-glucuronic acid residue.
[0090] In certain embodiments, each occurrence of Ry is independently -OH. In certain embodiments, each occurrence of Ry is independently -OR. In certain embodiments, each occurrence of Ry is independently a carboxyl protecting group. Suitable carboxyl protecting groups are well known in the art and include those described in detail in ProtectingGroups in OrganicSynthesis, T. W. Greene and P. G. M. Wuts, 3 rd edition, John Wiley & Sons, 1999, the entirety of which is incorporated herein by reference.
[0091] In some embodiments, each occurrence of RY, when taken with its attached carbonyl group, independently comprises an ester. In some embodiments, each occurrence of RY, when taken with its attached carbonyl group, independently comprises an amide. In some embodiments, each occurrence of RY, when taken with its attached carbonyl group, independently comprises a hydrazide.
[0092] In some embodiments, each occurrence of Ry is independently -OBn. In other embodiments, each occurrence of Ry is independently -OEt.
[0093] In certain embodiments, each occurrence of Rx is independently hydrogen. In certain embodiments, each occurrence of Rx is independently a suitable hydroxyl protecting group. Suitable hydroxyl protecting groups are well known in the art and include those described herein and by Greene (supra). In some embodiments, no more than fourR groups are simultaneously methyl.
RxO
RX RxO
[0094] In some embodiments, RS is ORX . In some embodiments, R is RxOMe
HO
HO HO HO- i [IT
[0095] In some embodiments, RS is OH . In some embodiments, R1 is HOMe
[0096] In some embodiments, each occurrence of R, when taken with its attached oxygen atom, independently comprises a methyl ether, ethyl ether, benzyl ether, silyl ether, ester, acetal, ketal, or carbonate. In some embodiments, Rx comprises a methyl ether. In some embodiments, R comprises a ethyl ether. In some embodiments, R comprises a benzyl ether. In some embodiments, R comprises a silyl ether. In some embodiments, Rx comprises an ester. In some embodiments, R comprises an acetal. In some embodiments, Rx comprises a ketal. In some embodiments, Rx comprises a carbonate.
[0097] In certain embodiments, R is methyl. In certain embodiments, Rx is ethyl. In certain embodiments, R is benzyl. In certain embodiments, Rx is SiR 3 . In certain embodiments, R is SiMe 3. In certain embodiments, Rx is TBS. 0 0
[0098] In certain embodiments, Ris ' R. In certain embodiments,R is'tOR. In certain 0
embodiments, Rx is NR
[0099] In some embodiments, two -OR' attached to adjacent carbon atoms on a saccharide ring are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur. In some embodiments, two -OR attached to adjacent carbon atoms on a saccharide ring are taken together to form a cyclic acetal protecting group. In some embodiments, two -OR attached to adjacent carbon atoms on a saccharide ring are taken together to form a cyclic ketal protecting group.
[00100] In certain embodiments, each R* is independently hydrogen. In certain embodiments, each R" is independently an optionally substituted 6-10-membered aryl group. In certain embodiments, each R'is independently an optionally substituted C1_6 aliphatic group. In certain embodiments, each R'is independently an optionally substituted C1_6 heteroaliphatic group having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur. In some embodiments, two Rx'are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
[00101] In some embodiments, all Rx are hydrogen.
[00102] In certain embodiments, R' is a carbohydrate domain having the structure:
R' Rd
ac
0 a d
wherein each of R°, Ra, Rb, R°, R, a, b, c, and d is defined as described in classes and
subclasses above and herein.
[001031 In some embodiments, a is 0. In some embodiments, a is 1.
[00104] In some embodiments, b is 0. In some embodiments, b is 1. In some embodiments, b is 2.
[00105] In some embodiments, c is 0. In some embodiments, c is 1. In some embodiments, c is 2.
[001061 In certain embodiments, the sum of b and c is 1. In certain embodiments, the sum of b and c is 2.
[00107] In certain embodiments, d is an integer from 1-7. In some embodiments, d is an integer from 1-5. In some embodiments, d is an integer from 1-4. In some embodiments, d is an integer from 1-2.
[001081 In certain embodiments, each d-bracketed structure is the same. In certain embodiments, each d-bracketed structure is different. In certain embodiments, two or more d bracketed structures are the same.
[00109] In some embodiments, one or more d-bracketed structures is a furanose moiety. In some embodiments, one or more d-bracketed structure is a pyranose moiety.
[00110] In some embodiments, R° is hydrogen. In some embodiments, R° is an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates. In other embodiments, R° is an optionally substituted moiety selected from the group consisting of acyl and C1 _ 10 aliphatic.
[00111] In some embodiments, each occurrence of Ra, R, R, and Rd is hydrogen. In some embodiments, each occurrence of Ra, R, R, and Rd is -OH. In some embodiments, each occurrence of Ra, Rb, R', and Rd is independently -OR. In some embodiments, each occurrence of Ra, R , R, and Rd is independently -OR. In some embodiments, each occurrence of Ra, e, R, and Rd is independently an optionally substituted C1_10 aliphatic group. In some embodiments, each occurrence of Ra, R , R', and Rd is independently an optionally substituted C1 _6 heteroaliphatic group.
[00112] In some embodiments, each occurrence of R, R , R, and Rd is -CH 2OH. In some embodiments, each occurrence of Ra, R , R', and Rd is methyl.
[001131 As generally described above, in certain embodiments, R' is a carbohydrate domain. In some embodiments, R' is a monosaccharide. In some embodiments, R is an oligosaccharide. In certain embodiments, each occurrence of R' is independently selected from the group consisting of: RXORxO ORx RxO ORx R ORx O ORx O O RxO R 5 RxO R5 OR0 0 OR0 RxO ORx RxO ORx OOx Rx ORX, RxoRxO 0ORx RxO ORx
RxO R 5 x{RxO R5 R xRx HfOH x
ORx , OH , Ior ORx
[00114] In certain embodiments, R 2 is hydrogen. In certain embodiments, R2 is halogen. In certain embodiments, R2 is -OH. In certain embodiments, R2 is OR. In certain embodiments,
R2 is -OC(O)R 4. In certain embodiments, R2 is -OC(O)OR4. In certain embodiments, R2 is OC(O)NHR 4 . In certain embodiments, R2 is-OC(O)NRR4. In certain embodiments, R2is OC(O)SR4. In certain embodiments, R2 is -NHC(O)R4. In certain embodiments, R2 is NRC(O)R 4 . In certain embodiments, R2 is -NHC(O)OR 4 . In certain embodiments, R2 is NHC(O)NHR 4. In certain embodiments, R2 is -NHC(O)NRR4. In certain embodiments, R2 is N(R4) 2 . In certain embodiments, R2 is -NHR4. In certain embodiments, R2 is -NRR4. In some
embodiments, R2 is N 3 .
[00115] In some embodiments, R2 is an optionally substituted group selected from C1 _ 30 aliphatic. In some embodiments, R2 is an optionally substituted group selected from C1-20
aliphatic. In some embodiments, R2 is an optionally substituted group selected from C 1_10 aliphatic.
[00116] In some embodiments, R2 is an optionally substituted group selected from C1 _ 30 heteroaliphatic. In some embodiments, R2 is an optionally substituted group selected from C1-20
heteroaliphatic. In some embodiments, R2 is an optionally substituted group selected from C1 _10 heteroaliphatic. In some embodiments, R2 is an optionally substituted group selected from C 1_6 heteroaliphatic.
[00117] In some embodiments, R 3 is hydrogen. In some embodiments, R3 is halogen. In some embodiments, R3 is -OH. In some embodiments, R3 is -OR. In some embodiments, R3 is OR. In some embodiments, R 3 is an optionally substituted C1 _1 0 aliphatic group. In some embodiments, R 3 is an optionally substituted C1_6 heteroaliphatic group. In some embodiments, R 3 is not hydrogen. In some embodiments, R 3 is not -OH.
[001181 In some embodiments, R 3 is -CH 2 OR. In some embodiments, R 3 is -CH 2OH. In some embodiments, R3 is methyl. In some embodiments, R 3 is not methyl. In some embodiments, R 3 is CH2OR'.
X OR'
OR 0 OR Me Me
[00119] In some embodiments, R4 is Me Me
[00120] In some embodiments, X is -0-. In some embodiments, X is -NR-.In some R OR1 N
OR 0 OR Me Me embodiments, R is 4 Me Me . In some embodiments, R 4
H H 2 OH N 0 OH
OH 0 OH Me Me is Me Me
H H OH N., ."0 OH
OH ,O OH -,, Me Me
[00121] In some embodiments, R 4 is Me Me 0
2 4s
[00122] In certain embodiments, R is-NHC(O)R4; and R4 is P , wherein p is 2 4 4 an integer from 0 to 12, inclusive. In certain embodiments, R'is -NHC(O)R;and R4 is 0
OH 2. P , wherein p is an integer from 0 to 12, inclusive. In certain embodiments, R is Me I +
4 NI-lMe NHC(O)R 4 ; and R4 is P , wherein p is an integer from 0 to 12, inclusive. In certain
Me 1
2 4s 4 is Me embodiments, Ris-NHC(O)R4; and Ris P , wherein p is an integer from 0 to 12,
inclusive. In certain embodiments, R 2 is -NHC(O)R4; and R 4 is OHwherein p
is an integer from 0 to 12, inclusive. In certain embodiments, R2 is -NHC(O)R 4; and R4 is
O Me2 -P , wherein p is an integer from 1 to 12, inclusive. In certain embodiments, R2 is
Me H Me Me 0 '"H
NHC(O)R 4; and R4 is Me Me
[00123] In certain embodiments, two R 4 on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
[00124] As described above, in certain embodiments, R4 is T-Rz. In some embodiments, T is a covalent bond or a bivalent C1 -26 saturated or unsaturated, straight or branched, hydrocarbon chain, wherein one or two methylene units of T are optionally and independently replaced by -0-, -S-, -N(R)-, -C(O)-, -C(O)O-, -OC(O)-, -N(R)C(O)-, -C(O)N(R)-, -S(O), -S(O) 2 -, N(R)S0 2-, or -SO 2N(R)-. In certain embodiments, T is a covalent bond or a bivalent C1_16
saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain. In certain embodiments, T is a covalent bond or a bivalent C1 -12 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain. In certain embodiments, T is a covalent bond or a bivalent C1g saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain.
[00125] In certain embodiments, -T- is selected from the group consisting of
[001261 In some embodiments, Rz is hydrogen. In some embodiments, Rz is halogen. In certain embodiments, Rz is -NC(O)OR. In some embodiments, Rzis -OR. In some embodiments, Rzis -OR. In some embodiments, Rz is -OR 1 . In some embodiments, Rz is -NR2 . In certain embodiments, Rz is an optionally substituted acyl group. In certain embodiments, Rz is an optionally substituted arylalkyl group. In certain embodiments, Rz is an optionally substituted heteroarylalkyl group. In certain embodiments, Rz is an optionally substituted C1_6 aliphatic group. In certain embodiments, Rz is an optionally substituted 6-10 membered aryl group. In certain embodiments, Rz is an optionally substituted 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur group. In certain embodiments, Rz is an optionally substituted 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur.
[00127] In certain embodiments, Rz is a monosaccharide. In certain embodiments, Rz is an oligosaccharide.
[001281 In certain embodiments, Rz is methyl. In certain embodiments, Rz is
Hg OH H OH
OH . In certain embodiments, Rzis
.
[00129] In some embodiments, each occurrence of R is independently hydrogen. In some embodiments, each occurrence of R is independently an optionally substituted acyl group. In some embodiments, each occurrence of R is independently an optionally substituted arylalkyl group. In some embodiments, each occurrence of R is independently an optionally substituted C7 -12 arylalkyl group. In some embodiments, each occurrence of R is independently an optionally substituted 6-10-membered aryl group. In some embodiments, each occurrence of R is independently an optionally substituted C 1-12 aliphatic group. In some embodiments, each occurrence of R is independently an optionally substituted C 1 _6 aliphatic group. In some embodiments, each occurrence of R is independently an optionally substituted C1 _6 heteroaliphatic group having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur. In some embodiments, two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
[001301 In certain embodiments, R 5 and R6 are independently hydrogen, an optionally substituted group selected from the group consisting of acyl, C1 1 0 aliphatic, C1 6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur. In certain embodiments, R5 and R6 are independently hydrogen. In some embodiments, R' and R 6 are independently -OH. In some embodiments, R' and R6 are independently -OR. In some embodiments, R5 and R6 are independently -OR. In some embodiments, R 5 and R 6 are independently an optionally substituted C1_10 aliphatic group. In some embodiments, R5 and R6 are independently an optionally substituted C1_6 heteroaliphatic group.
[001311 In some embodiments, R 5 and Ri are independently -CH2 OR. In some embodiments, R 5 and Ri are independently CH 2 OH. In some embodiments, R5 and R6 re independently methyl.
[00132] In some embodiments, each of R3 , R5 , and R6 is independently an optionally substituted C1I10 aliphatic group. In some embodiments, each of R, R5 , and R6 is independently
methyl. In some embodiments, each of R, R5 , and R6 is independently -CH 2OR. In some
embodiments, one or more of RI, R 5 , and Ri is -CH 2OH. In some embodiments, each of R3, R5, and R6 is -CH2 OH.
[001331 As described in further detail below, some materials used in the synthesis of compounds of formula I may be commerically available extracts derived from natural sources as mixtures of saponins. Such extracts may contain saccharide moieties attached to the C3-position of the triterpene that differ from those depicted in formula I. Examples of saponins and prosapogenins that may be used according to the present invention include those derived from Glycyrrhizic acid, Hederasaponin C, $-Aescin, Helianthoside 2, Ginsenoside Rd, and Saponinum album, to name but a few. All naturally-derived glycosylation variants of the C3 position of the triterpene core are contemplated by the present invention.
[00134] In some embodiments, RS of formula I is a xylose moiety, thereby providing a compound of formula VII-a: 0 Y-Z Me Me H RY(O)C Me H RxO O O L H RxO O O W H Me V Me ORx 0 H H Me RxO RxO0 R ROeRXOc~r~~ RXO
VII-a wherein each of R, RY, W, V, Y and Z is defined as described in classes and subclasses above and herein.
[00135] In some embodiments, R of formula I is a rhamnose moiety, thereby providing a compound of formula VII-b: 0 Y-Z Me Me H RY(O)C Me RxO ?\0 w Me V"'Me RxO W H V Me
RxR ORHx RxO VII-b wherein each of R, RY, W, V, Y and Z is defined as described in classes and subclasses above and herein.
[001361 In some embodiments, the triterpene core of formula I bears a monosaccharide at position C3. In some embodiments, a monosaccharide-substituted compound is of formula VIII: 0 Y-Z Me Me H RY(O)C Me H Rx0-%--q\L ORx W H Me V 'Me H H Me
VIII wherein each of R, RY, W, V, Y and Z is defined as described in classes and subclasses above and herein.
[00137] In some embodiments, the triterpene core of formula I bears an oligosaccharide at position C3. In some embodiments, oligosaccharide will contain rhamnose residues.
[001381 In certain embodiments, the triterpene core of formula I will bear disaccharides at position C3. In some embodiments, the disaccharide is galactose-glucuronic acid. In some embodiments, a disaccharide-substituted compound is of formula IX:
0 Y-Z Me Me H RY(O)C Me H RX0_ 00 V RHW H Me V 'Me 0Ru H H Me RxO0 ORx RxO
IX wherein each of R, RY, W, V, Y and Z is defined as described in classes and subclasses above and herein.
[001391 In some embodiments, the triterpene core of formula I bears no saccharide group at position C3, providing a compound of formula X: 0 Y-Z Me Me H Me '' H HO L W . Me V ''Me H H Me
X wherein each of W, V, Y and Z is defined as described in classes and subclasses above and herein.
[00140] Exemplary compounds of formula I are set forth in Table 1 below.
Table 1. Exemplary compounds of formula I
H Ph
BnO0 00
O OBn
BnO Me OBn O Bn
0 00 0 Me Me Me H O 0 Bn0 2C 0 Me H 0Ac Bn- Me20zo Bn0 BnO 0Bn OBnO0 ~ CHH H H Me 0',Me BnO- 0 Et3si' Me O O BnO OSiEt3 Me Me BnO
I-1
H Ph
BnO 00 n ,1'-0 0 OBn
Et3 S Mo OBn 0 0 EC8 O~n 00 Me Me Me H 0 BnO 2C Me c tS SO O H Me 0 Men0 Et 3SiO EtSiO O H Et 3S'i Me B O Et3Sio OSiEt3 Me'Me Et 3SiO
1-2
HO HO-- OH HO O OH
HO Me OH OH
0 0 0 OH HOOOOH Me Me H 0 H Me H HN HO~~\H I 00 0 O.N0I OHH OH 0 Hk e M ~ eM HOX;Io HO ~ ~ HOM0 ~M HTM0O Me Me ~ H OHH 0 6H
HO
1-3
HO O MH Me Me 49 0O0
HO Me H OH 00 o OH me Me H 0 H02C MeH 0 H HN Me 0 HO 0 HOHMe HO "Me0 0OHO-H 0 H- H Me MeI- 0 \ HO OH HO
1-4
HHO OH HOOM
HO meOH OH 0O 0__ OH O
H02 C Me MeM H 0H HO-- - O - L I 0 OH OHHo CHO H Me HO '/Me0 Me Me-10 Ho C H HHO OH HO
1-5
Me Me TBS, Me. TBS, Me 0 0 0 0
O ooOTBS H Ph o 0 .'.-Me S TBSO OTBS Me00 0M 00 BnO4 Me 01 " O' OBn Me ---. OBn TESO3 0 TESO TESO-- OTES 0 HCHO H TS' Me O~e_ TESO TE Me e
TESO TSM
1-6
Me Me TBS, Me) TBS,O Me 00 0 0
0n 0 TBS
Me0 H0 LZMe O~n TBS$K OTBS 0 Me Me H nO- Me H AO-j' Bn04 TESO TS 0 0 H_ BnO~-~B TESOX; OTES 0 0CO 0 Me ,0 y 0O 0 TESO CH M~~eSMMe 06O O?-e 0 TES 0 ~/ TESO\ / TES e 'Me TESO
1-7
H 1Me H
HM M M
HHMe HO H OHH HOO Me HH OH HO
Me MeHM M Me Me
OHO OCHO HO H OHH O OH H HO OOH
I-9
HO OH 0 HO
HN! HNN 1OH 05 OH HO HO H H H H oOH O 1-8 HO0 Me Me H OHHO0 O MeO HeOJ O HO OH 0 L HO e 0H H M HO""Me HOHO OH HCHOH H Me H~ HO OH HO
1-90
51O
HO 0
HN COH OH S jOH
0Me Me H HO Me HO COH% 00 H HHO O H Me HO "Me HO0 OH 0 . CH H Me HO OH HO
I-11
HO 0 0O OH HN-'Y? OH OH
0 MeMMe H OH 0HHO ,MeL H0 HO %SH O 0 O HHO O H Me HO "Me OH HO OH 0 H H H Me /
HO OH HO HO
1-12
HO 0
HN O 2o OH
4HOH OH 0
HOH OH O Me Me
HO OH HO
1-13
HO 0 HO OH M4H OH OH
Me Me Me HO OH H Oy\1!? Z HO HO Me OHC H Me HO "Me Me
1-14
HO HN O OH OH OH
0 Me Me H OH HO~ _ Me OHO HO OHO o L HO Me HO HOOH O O Me HO"'Me HO -OH OH Me
HO
I-15
HO OH
HO Me OH 0 O OH H O OHOH Me H OH
H0 2 C Me H N N,sO O
H O0O 0 HOH H MeHO e 0 0 6H 0 0 H O O H 0 H H Me Me~ Mee HO HOH eM me Me HO COH HO HO OH Me Me
HO
1-16
HO HOoOH O OH
HO MeO OH OH 0 0 o OH H2,-OH
HOO H0CMe Me OH MeHM HH H OH H OH O O OH 0 OH 0OH OH 00HO H H m Me 'me -Me HO COH Me Me HO
1-17 HO H O OO Me O MeIe O
HO Me OH OH OH 0 0 o OH H/OH
H0 2C Me i HO-:SO HNO- OH I L0 OH 0 H HO O Me HO Me O 0 OH HOH HH HMe me Me Ho\ / CH Me Me
HO
1-18
HO
HO Me 4OH OH 0 0 OH Me Me Me H 0 2 i Me 02 He HN Me O0 H 0 ICHOL eH 'H 0 HOOH O.H 0 H CH H MHOMe Me 03
HO OH HO OH HO
1-19
HO 0 OH
/O' -OH O HO Me OH OH 00 o OH
Me Me H HN Me HOC Me 0H HXO~HO HOI_0 00- CHOHMe HO "Me OH 0 0 OH OH H H Me HO OH HO
1-20 HO
OH OH
0 0 OH Me Me H 0 H0 2C Me HN Me 0 L OH HO O CH Me HO Me 0 OH OH 0 H H Me HOV OH
HO
1-21
0 0 HNW $OH
HOO H 0 OIlOH
HO Me Me H ' LHHOH
HO HOO OH HO H O HCHOH H Me HO'Me
HO OH HO 1-22
HN 0 Me FIOH HO OH
H 0 OH HOM M Me OH HoO OHO HOMe, Me HO .HH HOO
HN2O
HO..MVOH Me HOO O Me HO e HO H OM HO--j OHOHO 5 0 HO 0 0 HH 0 H j MeHOM MH"MeH OHeH He
1-23
HO ~~MMe O HOO OHO
HOI-2 Ho HOe HO
Me MM
0 HOMeH HHOH
HO H HO I-25
OH OO 0 -- l H HNI
0 Me Me H OH0 0 OH O HO -M e LH o MeHOM H O e H.OH 0 HMH Me
HO
1-26
N3 o ~~Bn BnO Me OBn
TESOM MTS\~ H 1 ~ OBn He CHO Me O~e 0"Me TESO O 0 H rH TE MeK Me TTSOO 0- Me S0M TESO CHTE'M
OS 0 MeH Me BOn
TESO TE 0ES HHHME'eM Me M 0H TESO 1 TES TESO 1-27
5N3
N3 H Ph 0 O OBn 00
OBn MMe HMe 0 H HSMe E TESO TESO OS Me
TESO 1-29
[00141] In certain embodiments, a compound of formula I is not selected from:
0 OH Me Me H BnO 2 C 0 MeH BnOo " OREt 3 S'iO(0 \Q OL H H0,J BnO 0_ ~ C HO H Me ,0 "Me BnO O~n 0 H H Et3Si Me
V CO4~s~ 0 OH BnO M4 Bn2CMe Me HH 0n 2 Me M H O0 HXHO H Me HO"Me BnO O~n 0 HHH Me BnO OH0 OalyI BnO Me Me H BnO 2 C MeH BnO- 0 COEt3SiO 0 0 RnO~ L o CHO H Me /0"'Me BnO O~n H H Et3Si Me Bn~OSEt 3 0 OaIlyI BnO Me Me H BnO 2 C MeH B 0 HO 0 . L H,r O CHO ;U , Me HO "Me BnO O~n 00 HOH H Me
0a~ 00 RnO Me Me H HO 2 C MeH , Hn-;O C L Bn O o0 CHO H Me HOMe RnOvO c H H Mely 0a~ 00 RnO M Me H MeO 2C Me MeHH
Bn0 HH Me HO"'Me RnO O~n 0H H Me
RnO
0 OMe 0 Me Me H MeO Me H Bn AcO L H B O HCHOH H Me HO ''Me BnO Bn 0 Hz Me Bn0 0BZ Bn0 0 OMe 0 Me Me H MeO -Me H Ac 0 0 L H BO HCHOH Me HO 'Me BzO OBn H Me BnO OBz Bn0
[00142] It will be appreciated that it is not an object of the present invention to claim compounds disclosed in the prior art that are the result of isolation or degradation studies on naturally-occurring prosapongenins or saponins.
[001431 As described above for compounds of formula I, in some embodiments, Y is -0-; Z is a carbohydrate domain having the structure:
10- R3
R2
wherein each occurrence of R1 is R' or a carbohydrate domain comprising furanose or pyranose
moieties; and R2 is -NHC(O)R4 .
[00144] Thus, according to one aspect, provided compounds are of formula II:
RxO
OR' O
RxO R5 ORX 0 0 OR' O-r0 -70 R3 O 00n Me Me H O RY(O)C Me ' R1 4 HN R4 W Me O)x 0 H H Me 0 R0ORX RXO OX RXO
II wherein each of R , R 4, R , R, R, Ry, V, and W is defined as described in classes and
subclasses above and herein.
[00145] In some embodiments, provided compounds are of formula II-a: 5 RxO R 0 O RR11 /
0 0 R Me Me H O RY(O)C Me '' R1 RxW~ LV H HN R4
HR0W H V Me VMe
RxO ORx RxO
II-a wherein each of R , R 4, R , R Rs, Ry, V, and W is defined as described in classes and
subclasses above and herein.
[001461 In some embodiments, provided compounds are of formula I-b:
Me Me H RIO RY(O)C Me ' R1 L H HN R4 RSO 4 0 HWr W e V"r w- 0 Me V Me 0 H H Me 0 RX 0X RxO ORX RxO
II-b wherein each of R , RR 4, R , R, Rxs, RY, V, and W is defined as described in classes and subclasses above and herein.
[00147] As described above for compounds of formula I, in some embodiments, Y is -0-;
and Z is a carbohydrate domain having the structure:
RR2 wherein each occurrence of R1 is Rx or a carbohydrate domain comprising furanose or pyranose moieties.
[001481 Thus, according to one aspect, provided compounds are of formulaIII, IT-a, III
b, ITT-c, III-d, III-e, IT-f, or III-g: RxO R5 0 OR 1 OR 1 0 O0 R3 Me Me H O RY(O)C Me 2 Rx0 0 0 L ORi 0 W H Me V Me O ORx H H Me RxO ORx
RxO
III
RxO
~OR'
RxO R 5 ORx 0 0 OR' 00 0 R Me Me H RY(0)C 0 eMe HH2 R - 0 WLV"r OR' 0 w Me V"'Me 0)RxH H Me
Rx0 R
RxO
111-a RxO R 5
0 OR ORx 3 0O 0 O R ORX Me Me H RY(O)C MeHR2 Rx07K o L_ H OR' R~0w ~ Me V ",Me~ ORx 0 H H Me Rx0 ORx
RxO 111-b RxO R 5 OR1 ORx 4O 0 0- R3 ORx Me Me H RY(O)C Me H2 RxO~LiOO L 0 Rso-~ Me V"M R61~ OR 0 H .Me 4
-OO~x RxO ITT-c
RxO
~OR'
RxO R 5 ORx 0 0 OR' 00 0 R MeMe H RY(0)C 0 eMe HH2
~s1~&0 0 w Me V "'Me L0 R6 RxO ORx Rx0 R M x~7 RxO
111-d RxO R 5
000
MeMe H RY(0)C Me MeH H 2~R RxO 00O_ L_ 0 0~ w Me V "Me R6 11 0Rx 0 H H me x! Rx0 ~ORx ROORx
RxO
III-e
RxO
OR' O RxO R 5 ORX 0 0 ORX Rx O3Rx 0 0 R3 ORX Me Me H O RY(O)C Me OR 2
RxW0 w i Me V "'Me ORX HR H Me RxO OR
RXO
III-f
RxO
OR' 0 RxO R 5 ORX 0 0 ORX
0 H 0 Me Me HO 0 RY(O)C On R Me2 ROOR RxOW H Me V'"Me R 6 1I0O HR OxH Me RXO RxO ORH
RXO
III-g
wherein each of R, R2, RS, RS, RS, R, Rs, RY,V, and Wis defined as described in classes and subclasses above and herein.
[001491 As described above for compounds of formula I,in certain embodiments, each occurrence of Rxis independently asuitable hydroxyl protecting group; Yis CH 2 , -0-, -NR-, or NH-; Zis hydrogen; acyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, and heteroaryl. Thus, according to another aspect, provided compounds are of formula IV: 0 Y' Me Me H RY(0)C Me H RxO_ 00 W RW H Me V "Me OR O H H Me
RxO IV wherein: -- is a single or double bond; Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RX'O ORx'
W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; Ry is -OH, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO
RxO RxO
Rs is ORx or RxOMe
each occurrence of Rx is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1- 12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group.
[00150] In some embodiments, at least one occurrence of R is an oxygen protecting group. In some embodiments, at least two occurrences of R is an oxygen protecting group. In some embodiments, at least three occurrences of R is an oxygen protecting group. In some embodiments, at least four occurrences of R is an oxygen protecting group. In some embodiments, all Rxare an oxygen protecting group. In some embodiments, each occurrence of R is independently an oxygen protecting group. In certain embodiments, all R oxygen
protecting groups are the same. In some embodiments, at least oneR oxygen protecting group is different from the other R oxygen protecting groups.
[00151] In some embodiments, Y'is not -OMe. In some embodiments, Y'is not -OH. In some embodiments, Y'is not -Oallyl. In some embodiments, Y'is not -OH or -OMe if allR groups are simultaneously hydrogen or if at least four R groups are simultaneously methyl.
[00152] In certain embodiments, at least one Rx group is not hydrogen. In certain embodiments, at least one Rx group is not methyl. In certain embodiments, at least oneR group is not hydrogen or methyl. In certain embodiments, no R groups are hydrogen. In certain embodiments, no Rx groups are methyl. In certain embodiments, no Rx groups are hydrogen or methyl.
[001531 In certain embodiments, provided compounds are of formula IV-b: 0 OH Me Me H RY(O)C Me H RxO 00 H RsO_ Me RXO'Me 0 CHO H Me RxO Me Me H RxOH
RxO
IV-b
[00154] Exemplary compounds of formula IV are set forth in Table la below.
Table la. Exemplary compounds of formula IV 0 OH Me Me H BnO 2C Me Bn ~-0 H Bno A Bno_ : e BnO E; e BnO EtsiOn HCH H Me Bno. CB
Ets BnO O_ OI O OH Me Me H HO 2C Me H EtSiO O , LH EtSiO 3 CH Me 0 Me O Et SiO H H Et3 Si Me Et 3SiO (-4Et Si3 0SEt 3 3
Et3 SOMe EtSiO O
0 OH Me Me H BnO2C Me Et3 SiO-~~ 0 H Et 3SiO S CH H Me O e 0 Et 3SiO H H Et3 Si Me
Et 3 SiO Et3SiO 0 OSiEt3 Me Et 3 SiO Et 3SiO
0 OH Me Me H Bn 2C Me H EtSO S Et SiOCH H M '0S' Me 0 'Me Et 3 SiO Et 3SiO 0 H H E 3SM
Et 3SiO or O OH Et3SiO Me Me H SiEt3 HO 2C MeH EtSO HSi H Me 0 'Me EtSOEt 3 SO 0 H EtSi M
Et3SiO
Synthesis of Compounds
[001551 Quil-A (Accurate Chemical and Scientific Corporation, Westbury, NY) is a commerically available semi-purified extract from Quillajasaonariawhich compries a mixture of at least 50 distinct saponin species (van Setten, D. C.; Vandewerken, G.; Zomer, G.; Kersten, G. F. A. Rapid Commun. Mass Spectrom. 1995, 9, 660-666). Many of said saponin species include a triterpene-trisaccharide substructure as found in immunologically-active Quillajasaponins such as QS-21 and QS-7: 0 0 H02 MeMe M eH HO2 C,_ MeA H
O- 0_ CHO Hme HO 'me S OH H H Me HO /"OH HO
[00156] It has been demonstrated (Guo, S.; Kenne, L.; Lundgren, L. N.; Rnnberg, B.; Sundquist, B. G. Phytochemistry, 1998, 48, 175-180) that exposure of saponin mixtures to base hydrolysis affords a mixure enriched with three prosapongenins A, B, and C: 0 OH 0 OH Me Me H Me Me H HO 2C Me H HO 2C Me H HO HO-> O - 0O~ CH Me HO 'Me HO H CH HMe HO 'Me OH OH H Me OH 0 H H Me HO OH H HO H O H HOWe HO HO
A B
0 OH Me Me H HO 2C Me H
HOCH H Me HO 'Me OH/ CHOH Me HO OH HO
C
[00157] However, further use of this semi-pure hydrolyzed mixture of prosapongenins is hindered by the fact that prosapongenins A and B, which differ only by an a-L-Rha vs. $-D-Xyl residue, are inseperable by silica gel chromatography.
[001581 Other work has described isolation of highly pure or semi-pure prosapogenins and saponins (WOOO/09075, U.S. Patent Nos. 6,231,859, 5,977,081, 6,080,725, 6,262,029; Higuchi, et al., Phytochemistry 1987, 26, 229-235; Brown, F., Haahein, LR (eds), Dev Biol Stand., vol. 92: Brown, F. and Haahein, LR., Karger, Basel:1998, pp 41-47; Kensil, 1991, supra; van Setten, supra). However, these procedures are not efficient in terms of cost and labor, often requiring several rounds of silica gel and/or HPLC purification in order to isolate the desired products. Furthermore, there is batch variability between commercially available QS samples such that some batches contain no saponins with rhamnose-containing branched trisaccharides. None of the previously described isolation or degradation studies provides efficient access to pure prosapogenins or sapogenins. For example, U.S. Patent No. 6,231,859 describes the isolation of 98% pure QS-21 following one silica gel chromatography and three or four additional rounds of HPLC run in sequence. The final yield of QS-21 was 59 mg from 20 g of Quillajasaponaria extract (see Examples 1 and 2). A similar procedure for the isolation of QS-7 yielded 7 mg of purified QS-7 (final purity not reported) from a 20 g Quillajasaponariaextract (see Examples 1 and 4). Such yields and purity are not sufficient for large scale production of pharmaceutical grade adjuvants.
[00159] In one aspect of the present invention, Applicant has unexpectedly found a strategy that allows for the facile separation of derivatized prosapogenins A and B via silica gel chromatography. In one aspect, the hydroxyl groups on prosapogenins A and B are derivatized with a suitable protecting group, as described herein, to afford derivatives that are separable by silica gel chromatography. In some embodiments, all hydroxyl groups are derivatized with the same protecting group. In other embodiments, different hydroxyl groups bear different protecting groups. In certain embodiments, the hydroxyl-protected prosapogenin A and B derivatives also have a protecting group on one or both of their carboxylic acid groups.
[001601 In certain embodiments, poly(silylation) of prosapogenins A and B, wherein all hydroxyl groups are converted to silyl ethers, gives a mixture of poly(silylated) diacid prosapogenins A and B that are easily separable via silica gel chromatography. In some embodiments, poly(silylation) is used to afford nonakis(trialkylsilyl) ethers of prosapogenins A and B. In some embodiments, poly(silylation) is used to afford nonakis(triethylsilyl) ethers of prosapogenins A and B. In some embodiments, poly(silylation) is used to afford nonakis(trimethylsilyl) ethers of prosapogenins A and B.
[001611 In other embodiments, the hydroxyl groups on prosapogenins A and B are derivatized as poly(benzyl) ethers to give a mixture of poly(benzyl) diacids of prosapogenins A and B that are easily seperable via silica gel chromatography. In some embodiments, poly(benzyl) etherification is used to afford nonakis(benzyl) ethers of prosapogenins A and B.
[00162] One of ordinary skill will appreciate that a number of suitable protecting groups may be used, and that one or both carboxylic acid groups may optionally be protected as well. In certain embodiments, the glucoronic acid group is selectively protected prior to derivitizing the hydroxyl groups of prosapogenins A and B. In some embodiments, the glucoronic acid group is selectively protected subsequent to derivitizing the hydroxyl groups of prosapogenins A and B.
[001631 Batch variability of commerically available Quillajasaponariaextracts may result in hydrolyzed saponin mixtures containing prosapogenins other than A, B, and C. In certain embodiments, the hydrolyzed saponin mixture subjected to the described protecting group strategy will be an enriched mixture of prosapogenins A and B. In some embodiments, the saponin mixture will contain one or more other prosapogenins such as prosapogenin C. In certain embodiments, a preliminary round of chromatography is used to render the saponin mixture enriched in prosapogenins A and B.
[00164] Other prosapongenins may be subjected to base hydrolysis and the protecting group strategies described above and herein. Examples of saponins that may be derivatized with protecting groups according to the present invention include Glycyrrhizic acid, Hederasaponin C, -Aescin, Helianthoside 2, Ginsenoside Rd, and Saponinum album, to name but a few.
[00165] In some embodiments, the mixture of prosapogenins will contain rhamnose residues. In some embodiments, the mixture of prosapogenins will not contain rhamnose residues. In some embodiments, the mixture of prosapogenins will be derived from Gypsoside A.
[001661 In certain embodiments, the mixture of prosapogenins will contain disaccharides. In some embodiments, the disaccharide is galactose-glucuronic acid.
[00167] As described herein, prosapogenins bearing protecting groups in accordance with the present invention may be separated and isolated from one another by suitable physical means. The term "separated by suitable physical means" refers to methods of separating mixtures of prosapogenins or saponins. Such methods are well known in the art and include preferential crystallization, chromatography, and trituration, among others. One of ordinary skill in the art will recognize that such methods may allow for the separation and isolation of both major and minor constituents.
[001681 In some embodiments, suitable protecting groups will render provided compounds crystalline. In certain embodiments, preferential crystallization is used to separate provided compounds.
[001691 It will be appreciated that chromatography steps aimed at separating derivatives of prosapogenins A and B may be carried out according to methods known in the art. In certain embodiments, chromatography is carried out on derivatives of prosapogenins A and B wherein all hydroxyl groups bear a suitable protecting group. In some embodiments, chromatography is carried out on poly(benzyl) diacids of prosapogenins A and B. In some embodiments, chromatography is carried out on poly(silyl) ether diacids of prosapogenins A and B. In some embodiments, chromatography is carried out on poly(benzyl) ethers of prosapogenins A and B wherein one or both carboxylic acid groups bears a protecting group. In some embodiments, chromatography is carried out on poly(silyl) ethers of prosapogenins A and B wherein one or both carboxylic acid groups bears a protecting group.
[00170] In certain embodiments, the chromatography is gravity silica gel chromatography. In certain embodiments, the chromatography is flash silica gel chromatography. In certain embodiments, the chromatography is gravity alumina gel chromatography. In certain embodiments, the chromatography is flash alumina gel chromatography. In certain embodiments, the chromatography is high pressure liquid chromatography (HPLC).
[00171] In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >70% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >80% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >90% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of>95% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >98% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >99% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >99.5% purity. In some embodiments, separation by suitable physical means yields provides prosapogenin compounds of >99.9% purity.
[00172] In certain embodiments, provided compounds of formula I have >80% purity. In some embodiments, provided compounds of formula I have >90% purity. In some embodiments, provided compounds of formula I have >95% purity. In some embodiments, provided compounds of formula I have >98% purity. In some embodiments, provided compounds of formula I have >99% purity. In some embodiments, provided compounds of formula I have >99.5% purity. In some embodiments, provided compounds of formula I have
>99.9% purity.
[001731 Thus, according to another aspect, the invention provides a method of using protecting groups to isolate prosapogenins, the method comprising the steps of: (a) providing a mixture of prosapogenins of formula IV-a: 0 Y' Me Me H RY(O)C Me H HO 00-0 W 11 Me V "Me O H H H Me
HO IV-a wherein: -- is a single or double bond; Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RX'O ORX' W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; RY is -OH, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
HO ~
HO-X - HO HO ~~[ Rs is OH or HOMe each occurrence of Rx is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1_6 aliphatic, or C1_6 heteroaliphatic having 1
2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; (b) treating said compound of formula IV-a under suitable conditions to form a mixture of prosapogenins of formula IV: 0 Y' Me Me H RY(O)C Me H RxO 00 Rs0 T W Me LO V "Me OR O H H Me
RxO IV wherein each of -- , RYY', V, and W is as defined for compounds of formula IV-a, Rs is as defined for compounds of formula I, and each occurrence ofR is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; and (c) obtaining said compound IV by suitable physical means.
[00174] As described above, the present invention provides methods of preparing compounds of formula I. In some embodiments, the R and RY groups of provided compounds are suitable protecting groups. Without wishing to be bound by any particular theory, it is believed that the presence of said protecting groups on provided compounds of formula IV is useful in the reaction of compounds of formula IV with a compound of formula V to form a compound of formula I. As depicted below in Scheme 1, a compound of formula IV may be reacted under suitable conditions with a compound of formula V to provide a compound of formula I.
Scheme 1 0 Y' Me Me H RY(O)C Me H LG-Z RxO RxOj9> 0 v Rx O K W H Me V "'Me LG H H M ORXORxo H Me RxO ORx IV
RXO 0 Y-Z Me Me H RY(O)C Me H RXO W H Me V "Me ORx ORxH H Me
RxO ORx RxO
wherein each of-, R,RV, and W is defined as described in classes and subclasses above and herein; Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; Z is hydrogen; a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, and heteroaryl; or a carbohydrate domain having the structure:
. R R1 0 0 R3 101 R0 R or OR' wherein: each occurrence of R 1 is Rx or a carbohydrate domain having the structure:
Rc Rd
a c
Rab Ra - -d
wherein:
each occurrence of a, b, and c is independently 0, 1, or 2;
d is an integer from 1-5, wherein each d bracketed structure may be the same or
different; with the proviso that the d bracketed structure represents a furanose or pyranose moiety, and the sum of b and c is 1 or 2;
R° is hydrogen, an oxygen protecting group selected from the group consisting of
alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and
carbonates; or an optionally substituted moiety selected from the group consisting
of acyl, C1_10 aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur;
each occurrence of Ra, Rb, R', and Rd is independently hydrogen, halogen, OH, OR, OR,
NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1 6_
heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4
heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered
heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of
nitrogen, oxygen, and sulfur.
[00175] One of ordinary skill in the art will appreciate that provided compounds can be
subjected to reductive conditions (i.e., LiAlH 4 , NaBH 4, AlH 3, NaBH 3 (OAc), Zn(BH 4) 2, Et 3SiH, and others described in March, supra) to transform the aldehyde moiety into an alcohol or
methyl group. Provided compounds can also be subjected to oxidative conditions (i.e., MnO 4-,
chromic acid, bromine, Oxone@, silver oxide, and others described in March, supra) to
transform the aldehyde moiety into a carboxyl group. Such hydroxyl or carboxyl groups can be
protected with suitable protecting groups as defined above and herein.
RX'O ORx'
[00176] Thus, in certain embodiments, W is Me, -CHO, I , -CH2 OR, or -C(O)ORY. In certain embodiments, W is methyl. In other embodiments, W is -CHO. In certain
embodiments, W is -CH2 OR. In other embodiments, W is -C(O)ORY. In some embodiments,
W is -CH 2OH. In other embodiments, W is -CH 20Bn. In other embodiments, W is -CH 20SiEt 3
. In certain embodiments, W is -C(O)OH. In other embodiments, W is -C(O)OBn.
[00177] In certain embodiments, V is -OR. In some embodiments, V is -OH. In some
embodiments, V is hydrogen.
[001781 As defined above, - represents a single or double bond. It will be appreciated
that compounds of formula IV can be subjected to hydrogenation conditions (i.e., Raney-Ni,
Pd/C, NaBH 4 , reduced nickel, Adams' catalyst, zinc oxide, Wilkinson's catalyst, and others
described in March, supra) that reduce the double bond to a single bond.
[00179] It will be appreciated that the C28 carboxyl group may be transformed into other carbonyl functional groups. In some embodiments, the carboxyl group is reduced to an
aldehyde. In other embodiments, the carboxyl group is converted into a Weinreb amide. In
other embodiments, the carboxyl group is converted into an amide. In other embodiments, the
carboxyl group is converted into an ester.
[001801 As defined above, Y is CH 2 , -0-, -NR-, or -NH-. In certain embodiments, Y is CH2 . In certain embodiments, Y is -0-. In other embodiments, Y is -NR-. In some
embodiments, Y is -NH-.
[001811 The present invention encompasses the recognition that judicious selection of protecting groups on provided compounds of formula IV allows for the derivation of the -C(O)Y'
group attached to C28. In certain embodiments, -C(O)Y'is a ketone. In other embodiments,
-C(O)Y'is an amide. In some embodiments, -C(O)Y'is an ester.
[00182] The LG group of formula V is a suitable leaving group. One of ordinary skill in the art will appreciate that a variety of suitable leaving groups LG can be used to facilitate the
reaction described in step S-1, and all such suitable leaving groups are contemplated by the
present invention. A suitable leaving group is a chemical group that is readily displaced by a
desired incoming chemical moiety. Suitable leaving groups are well known in the art, e.g., see, March, supra. Such leaving groups include, but are not limited to, halogen, alkoxy, sulphonyloxy, optionally substituted alkylsulphonyl, optionally substituted alkenylsulfonyl, optionally substituted arylsulfonyl, and diazonium moieties. Examples of some suitable leaving groups include chloro, iodo, bromo, fluoro, methanesulfonyl (mesyl), tosyl, triflate, nitro phenylsulfonyl (nosyl), and bromo-phenylsulfonyl (brosyl). Additional leaving groups are described herein.
[001831 In certain embodiments, a compound of formula V is a monosacchide or oligosaccharide that may act as a glycosylation donor. Thus, according to another aspect of the invention, provided compounds are of formulae VI or VI':
LG 1 LG 1 R10 R3 R1 R3
R2 OR 1 VI VI' 1 23 wherein each of R , R2, and R3 is defined as described in classes and subclasses above and herein; and LG 1 is a suitable leaving group.
[00184] As depicted in Scheme 2, a compound of formula IV may be reacted under suitable conditions with a compound of formula VI to give a compound of formula I-A: Scheme 2 LG1
R10 R3 Me Me H 2 RYO 2C Me H VI R
RsO we Me V"Me V 0Rx H H Me S-1 0 RxO .<ORx IV RXO 0 y 3 1 Me Me H R 0 RYO 2 C Me R 10 RxO 0 0 W M LV HrvR 0 W Me V "'Me ORx H H Me 0
RxO ORX I-A RXO
wherein each of -, R Y, R, V, W, Y', Y, R , R2, R , and LG is defined as described in classes and subclasses above and herein.
[001851 The LG' group of compounds of formulae VI and VI' is a glycoside donor leaving group, as defined and described herein. One of ordinary skill in the art will appreciate that a variety of suitable leaving groups LGI can be used to facilitate the reaction described, and all such suitable leaving groups are contemplated by the present invention.
[001861 In some embodiments, LG' is monovalent. In other embodiments, LGI is divalent. In certain embodiments, the LG group of formula V is halogen, thioalkyl, thioaryl, thioheteroaryl, thiocyano, 0-acyl, orthoester, 0-carbonate, S-carbonate, trichloroimidate, 4 pentenyl, phosphate, 0-sulfonyl, 0-silyl, hydroxyl, diazirine, or arylseleno.
[00187] As described above, in certain embodiments the LG' group is halogen. In some embodiments, LG' is Br. In some embodiments, LG' is Cl. In some embodiments, LGI is F.
[001881 In some embodiments, LG' is thioalkyl. In some embodiments, LG' is -SEt. In some embodiments, LG' is -SMe.
[001891 In some embodiments, LG' is thioaryl. In some embodiments, LG' is -SPh.
[00190] In some embodiments, LG' is thioheteroaryl. In some embodiments, LGI is N
thiopyridinyl (-SPy). In some embodiments, LG is In some embodiments, Ph N
LGI is N'N
[00191] In some embodiments, LG' is O-acyl. In some embodiments, LG' is -OAc. In some embodiments, LG' is -OC(O)CH 2Br. In some embodiments, LGI is -OBz. In some embodiments, LG' is -OC(O)C 6H4 -p-NO2 . In some embodiments, LGI is -OC(O)Py.
[00192] In some embodiments, the LGI group maybe taken together with another part of Z to form a cyclic moiety. In certain embodiments, the taking together of LGI with another part of Z forms an ortho ester or derivative thereof. In certain embodiments, the LGI group comprises a tert-butyl ortho ester. In some embodiments, the LGI group comprises a 1 cyanoethylidene. In some embodiments, the LG' group comprises a (p methylphenyl)thioethylidene. In some embodiments, the LGI group comprises an ethylthioethylidene. In some embodiments, the LG' group comprises an [N-(1 phenylethylidene)amino]oxyl-2,2-dimethylpropylidene. In some embodiments, the LG' group comprises a cyclic thiocarbonate. In some embodiments, the LGI group comprises a diazirine.
[001931 In some embodiments, LG' is O-carbonate. In some embodiments, LG' is 0 xanthate. In some embodiments, LG' is -OC(S)SMe. In some embodiments, LGI is O S -- 0 O N"l -1--O N" \:-N. In some embodiments, LGI is \::N. In some embodiments, LGI is S -+S 1ND SC(S)-OEt. In some embodiments, LG is
[00194] In certain embodiments, LG' is trichloroimidate. In some embodiments, LGI is -OC(NH)CCl 3 .
[00195] In certain embodiments, LG' is 4-pentenyl. In some embodiments, LGI is -O(CH 2) 3CHCH 2 .
[001961 In certain embodiments, LGI comprises a phosphate. In some embodiments, LG comprises a diphenyl phosphate. In some embodiments, LGI comprises a diphenylphosphineimidate. In some embodiments, LGI comprises a phosphoroamidate. In some embodiments, LG' comprises a phosphorodiamidimidothioate. In some embodiments, LGI comprises a dimethylphosphinothioate.
[00197] In certain embodiments, LG' is 0-sulfonyl. In some embodiments, LGI is -OTs. In some embodiments, LG' is -OMs. In some embodiments, LG' is -OTf.
[001981 In some embodiments, LG' is O-silyl. In some embodiments, LG' is -OTMS. In some embodiments, LG' is -OSiEt 3 . In some embodiments, LG' is -OTBS.
[00199] In certain embodiments, LG' is hydroxyl.
[00200] In certain embodiments, LG' is a-linked compound of formula VI. In certain embodiments, LG' is $-linked compound of formula VI.
[00201] In certain embodiments, LG' is n-alkenyl.
[00202] General methods and reagents for carrying out glycosylation reactions are described by Toshima, K. and Tatsuta, K., Chem. Rev. 1993, 93, 1503-1531, the entire contents of which is hereby incorporated by reference.
[002031 In certain embodiments, compounds of formula I are provided by conjugating an oligosaccharide of formulae VI or VI' with a compound of formula IV as described for step S-1.
In some embodiments, the entire oligosaccharide is prepared as a compound of formula VI prior to step S-1. In other embodiments, a monosaccharide of formula VI is conjugated in step S-1 to a compound of formula IV, and the resulting triterpene-saccharide conjugate is subjected to further glycosylation reactions to provide a compound of formula I. In some embodiments, protecting group strategies are employed that allow for selective glycosylation reactions to occur in the assembly of the final triterpene oligosaccharide compound of formula I.
[00204] Thus, in another aspect, the present invention provides compounds of formulae VI-1, VI-2, VI-3, VI-4, VI-5, VI-6, VI-7, VI-8, VI-9, VI-10, and VI-11:
RxO ORX RxORxO ORX R2ZOR OORX O O
RxO R5 x RxO R 5 1 Rx ORX 0 Rx ORX
~ LG' LG1 OXX~RX
O 2R3XOR OR2
VT-i 0: VI-2 0 OR 2\O2 RXORxO0-O-ORX RxO R5 O0/ ORX ORx 0 6 04 ~ Rx060 O O R LG 1 R ORx 5 RO O R3 ORx RxO R
LGiO, R3 R
RxOR2 RO ORx
VI-3 VI-4
RxO
R LG~R0 xO ORx
ORXx
HNOR ORx
00
0 OO~x 1 LG 4 LG{OR RXO~~ 7 R5 Rx 5
VI-7 VI-8
LG1 O~ OH 0 0
RxO R 5 RxO R 5 r 0 ORx 0 -- OO~x ORx 1 LG 0 LG 3
N3 N3
V-to V-li
R82
RIO R5 LG' R3 RxO R5 O OR R0 O ORx ORx 1 Rx ORx LG 1 0 LG RxO 2R3 ORX
R612 RIOLX0 0 R2 R ORX ORx VI-12 VI-13 VI-14
3 2 4 5 6 wherein each of R2, R3, R , R', R , R, and LG is defined as described in classes and subclasses
above and herein.
[00205] In certain embodiments, compounds of formula VI are monosaccharide and D
fucosyl. In some embodiments, compounds of formula VI are monosaccharide and L-fucosyl.
In some embodiments, compounds of formula VI are monosaccharide and are not fucosyl. In
some embodiments, compounds of formula VI are monosaccharide and are not D-fucosyl. In
some embodiments, compounds of formula VI are monosaccharide and are not $-D-fucosyl.
[002061 In some embodiments, compounds of formula VI are oligosaccharide, and the
carbohydrate domain directly attached to Y is fucosyl. In some embodiments, compounds of formula VI are oligosaccharide, and the carbohydrate domain directly attached to Y is not D
fucosyl. In some embodiments, compounds of formula VI are oligosaccharide, and the
carbohydrate domain directly attached to Y is not $-D-fucosyl. In some embodiments,
compounds of formula VI are oligosaccharide, and the carbohydrate domain directly attached to
Y is not a-D-fucosyl. In some embodiments, compounds of formula VI are oligosaccharide, and
the carbohydrate domain directly attached to Y is not fucosyl.
[00207] In some embodiments, compounds of formula VI are optionally substituted
monosaccharide and D-fucosyl. In some embodiments, compounds of formula VI are optionally substituted monosaccharide and L-fucosyl. In some embodiments, compounds of formula VI are
optionally substituted monosaccharide and not fucosyl. In some embodiments, compounds of
formula VI are optionally substituted monosaccharide and not $-D-fucosyl.
[002081 Exemplary compounds of formula VI are set forth in Table 2.
Table 2. Exemplary compounds of formula VI
C13C0l 0
NH TBSO 0 Me 0kcl 13C0 0 OAc 0130 0 Me on~M TBSAO 0M TBOOAc 0ME .Me
H Ph H Ph
BnO 000 BnO 00
0 OBn ,M==0OB n
BnO Me OnBnO Me HO 0 O0 NH [O~3 Si OBn NHO 0 ~On 013n[ OT U OBnn _40 e OBn 0 O-H OBn
OAc GAc
BnO !1: Bn !z4
MeeMe Me
H Ph
BnO 0 0 /tO'{-OBn N3 H Ph
NHO MeB~ CNHCI 0 I~ ~O~ n
0130OH 00M HBf1l--O~nF(N)
-O~ P84
Me Me TBS\ Me TBS\ Me 0 0 0 0
O O OTBS OBn O Me H Ph TBS0 OTBS
OC(NH)CCI 3 OC(NH)CCl 3 OBn O 0 Bn p OBn 0 BnO- OBn OBn
O e OMe
MeMe MeMe
Me Me TBS, Me TBS, Me 0 0 0 0
0 y 0 OTBS BnO 0 Me TBSO OTBS O~n OC(NH)CCl 3 Bn J OBn O BnOOBn
0Me Me Me
[00209] In certain embodiments, the present compounds are generally prepared according to Scheme 3 set forth below: Scheme 3
OH ORx
RxO i Ho M O S-2 O MeMe MMe
wherein each of R6 and R is defined as described in classes and subclasses above and herein.
[00210] In some embodiments, the present compounds are generally prepared according to Scheme 4 set forth below:
Scheme 4
ORx ORX
HO R3 S-3 RxO R3
OOH ORX
wherein each of R3 and R is defined as described in classes and subclasses above and herein.
[00211] In some embodiments, the present compounds are generally prepared according to Scheme 5 set forth below: Scheme 5 ORx
OH ORRxO H x R6T 7O0 ORx O~ 'OR r RxO R S-4 RO RX S-5 RO OR0
Me'Me ORx Me MMe Me Me
wherein each of R3, R6 , and R is defined as described in classes and subclasses above and herein.
[00212] In some embodiments, the present compounds are generally prepared according to Scheme 6 set forth below:
Scheme 6 RxO RxO ORx M OH Me OR' 0 0 H 5 - MMe
H + R O ORX SORX 0 OROR Mei:00 OH S-6 o- S-7 PJ47-- O x MeMe 7~ ORx ORX
S-8 RxO
OR1 RxO O OR' RxO R5 x 0 0 O R RxO R 5 R0 30 ORx
ORX R6 RxO O
Me'Me
wherein each of R, R, R, RLG, and R is defined as described in classes and subclasses above and herein.
[002131 In each of the synthetic steps depicted in Schemes 3-6, one of ordinary skill will recognize that a variety of suitable protecting groups may be used. Orthogonal protecting group strategies are well known in the art and may be used to selectively protect and deprotect saccharide hydroxyl groups. It will be appreciated that a variety of suitable leaving groups LGI may also be employed, as described above, to carry out glycosylation step S-9.
[00214] In certain embodiments, step S-1 involves the addition of a nucleophile to a compound of formula IV. In some embodiments, the reaction between a compound of formula IV and a nucleophile is carried out using suitable esterification conditions. The term "suitable esterification conditions," as used herein, refers to the catalyzed or uncatalyzed esterification or transesterification between an oxygen nucleophile and an ester or carboxylic acid. In some embodiments, the conditions comprise the addition or one or more bases. In some embodiments, the base is an amine. In some embodiments, an additional promoter of esterification may be used such as DMAP or EDC.
[00215] In some embodiments, the reaction between a compound of formula IV and a nucleophile is carried out using suitable peptide bond forming conditions. Suitable peptide coupling conditions are well known in the art and include those described in detail in Han et al., Tetrahedron, 60, 2447-67 (2004), the entirety of which is hereby incorporated by reference. In certain embodiments, the peptide coupling conditions include the addition of HOBt, DMAP, BOP, HBTU, HATU, BOMI, DCC, EDC, IBCF, or a combination thereof.
[002161 In some embodiments, the nucleophile is carbon-based, such as an alkyl metal species. In some embodiments, the nucleophile is a Grignard reagent. In some embodiments, the nucleophile is an organolithium. In some embodiments, the nucleophile is an organoborane. In some embodiments, the nucleophile is an organotin. In some embodiments, the nucleophile is an enol.
Uses
[00217] Compounds of formulae I,II, III, or IV may be used as adjuvants or to enhance the cellular uptake of toxins. The inventive compounds may be particularly useful in the treatment or prevention of neoplasms or other proliferative diseases in vivo. However, inventive compounds described above may also be used in vitro for research or clinical purposes.
Adjuvants
[002181 Most protein and glycoprotein antigens are poorly immunogenic or non immunogenic when administered alone. Strong adaptive immune responses to such antigens often requires the use of adjuvants. Immune adjuvants are substances that, when administered to a subject, increase the immune response to an antigen or enhance certain activities of cells from the immune system. An adjuvant may also allow the use of a lower dose of antigen to achieve a useful immune response in a subject.
[00219] Common adjuvants include alum, Freund's adjuvant (an oil-in-water emulsion with dead mycobacteria), Freund's adjuvant with MDP (an oil-in-water emulsion with muramyldipeptide, MDP, a constituent of mycobacteria), alum plus Bordetellapertussis (aluminum hydroxide gel with killed B. pertussis). Such adjuvants are thought to act by delaying the release of antigens and enhancing uptake by macrophages. Immune stimulatory complexes (ISCOMs) such as Quil-A (a Quillaja saponin extract) are open cage-like complexes typically with a diameter of about 40 nm that are built up by cholesterol, lipid, immunogen, and saponin. ISCOMs deliver antigen to the cytosol, and have been demonstrated to promote antibody response and induction of T helper cell as well as cytotoxic T lymphocyte responses in a variety of experimental animal models.
[00220] Various studies have raised the concern of potential toxicity associated with saponin-based adjuvants. Fractionation experiments testing the major components of Quil-A showed that QS-21 had low toxicity and QS-7 showed no lethality at the doses tested in CD-I mice intradermally. QS-7 showed no hemolytic activity at levels up to 200 pg/mL of saponin (Kensil et al., 1991, supra).
[00221] In humans, QS-21 has displayed both local and systemic toxicity. Maximum doses for healthy patients are typically ! 50 pg, and<! 100 pg for cancer patients. As mentioned above, QS-7 has been found not only to possess significant stand-alone adjuvant activity, but also to induce remarkable synergistic immune response augmentation. Unfortunately, QS-7 has proven difficult to isolate in clinically useful quantities.
[00222] The present invention encompasses the recognition that synthetic access to and structural modification of QS-7 and related Quillajasaponins may afford compounds with high adjuvant potency and low toxicity.
Enhanced uptake of toxins
[002231 Saponins have been shown to exhibit cell membrane-permeabilizing properties, and have been investigated for their therapeutic potential. In some cases, saponins have virtually no effect alone, but when used in combination with another drug will significantly amplify the effects of the other drug. One example of such a combination effect is with ginsenoside and cis diaminedichloroplatinum(II) (Nakata, H., et al., Jpn J CancerRes. 1998, 89, 733-40). Therefore, saponins have potential utility in combination therapies with antitumor drugs for cancer treatment. Saponinum album from GypsophilapaniculataL. has been described to enhance the cytotoxicity of a chimeric toxin in cell culture, even at nonpermeabilizing concentrations.
[00224] In certain embodiments, provided compounds may be used to enhance the uptake of other cytotoxic agents.
Vaccines
[00225] Compositions of the invention are useful as vaccines to induce active immunity towards antigens in subjects. Any animal that may experience the beneficial effects of the compositions of the present invention within the scope of subjects that may be treated. In some embodiments, the subjects are mammals. In some embodiments, the subjects are humans.
[002261 The vaccines of the present invention may be used to confer resistance to infection or cancer by either passive or active immunization. When the vaccines of the present invention are used to confer resistance through active immunization, a vaccine of the present invention is administered to an animal to elicit a protective immune response which either prevents or attenuates a proliferative or infectious disease. When the vaccines of the present invention are used to confer resistance to infection through passive immunization, the vaccine is provided to a host animal (e.g., human, dog, or mouse), and the antisera elicited by this vaccine is recovered and directly provided to a recipient suspected of having an infection or disease or exposed to a causative organism.
[00227] The present invention thus concerns and provides a means for preventing or attenuating a proliferative disease resulting from organisms or tumor cells which have antigens that are recognized and bound by antisera produced in response to the immunogenic polypeptides included in vaccines of the present invention. As used herein, a vaccine is said to prevent or attenuate a disease if its administration to an animal results either in the total or partial attenuation (i.e., suppression) of a symptom or condition of the disease, or in the total or partial immunity of the animal to the disease.
[002281 The administration of the vaccine (or the antisera which it elicits) may be for either a "prophylactic" or "therapeutic" purpose. When provided prophylactically, the vaccine(s) are provided in advance of any symptoms of proliferative disease. The prophylactic administration of the vaccine(s) serves to prevent or attenuate any subsequent presentation of the disease. When provided therapeutically, the vaccine(s) is provided upon or after the detection of symptoms which indicate that an animal may be infected with a pathogen or have a certain cancer. The therapeutic administration of the vaccine(s) serves to attenuate any actual disease presentation. Thus, the vaccines may be provided either prior to the onset of disease proliferation (so as to prevent or attenuate an anticipated infection or cancer) or after the initiation of an actual proliferation.
[00229] Thus, in one aspect the present invention provides vaccines comprising one or more bacterial, viral, protozoal, or tumor-related antigens in combination with one or more inventive compounds. In some embodiments, the vaccine comprises a single bacterial, viral, protozoal, or tumor-related antigen in combination with one inventive compound. In some embodiments, the vaccine comprises two or more bacterial, viral, protozoal, or tumor-related antigens in combination with a single inventive compound. In some embodiments, the vaccine comprises a two or more bacterial, viral, protozoal, or tumor-related antigens in combination with two or more inventive compounds. In some embodiments, the vaccine comprises a single bacterial, viral, protozoal, or tumor-related antigens in combination with two or more inventive compounds.
[002301 In some embodiments, one or more antigens of provided vaccines are bacterial antigens. In certain embodiments, the bacterial antigens are antigens associated with a bacterium selected from the group consisting of Helicobacterpylori, Chlamydia pneumoniae, Chlamydia trachomatis, Ureaplasmaurealyticum, Mycoplasmapneumoniae, Staphylococcus spp., Staphylococcus aureus, Streptococcus spp., Streptococcus pyogenes, Streptococcus pneumoniae, Streptococcus viridans, Enterococcusfaecalis,Neisseriameningitidis, Neisseriagonorrhoeae, Bacillus anthracis, Salmonella spp., Salmonella typhi, Vibrio cholera, Pasteurellapestis, Pseudomonas aeruginosa, Campylobacter spp., Campylobacterjejuni,Clostridium spp., Clostridium difficile, Mycobacterium spp., Mycobacterium tuberculosis, Treponema spp., Borrelia spp., Borreliaburgdorferi, Leptospria spp., Hemophilus ducreyi, Corynebacterium diphtheria, Bordetellapertussis,Bordetellaparapertussis,Bordetella bronchiseptica, hemophilus influenza, Escherichiacoli, Shigella spp., Erlichia spp., Rickettsia spp. and combinations thereof.
[00231] In certain embodiments, one or more antigens of provided vaccines are viral associated antigens. In certain embodiments, the viral-associated antigens are antigens associated with a virus selected from the group consisting of influenza viruses, parainfluenza viruses, mumps virus, adenoviruses, respiratory syncytial virus, Epstein-Barr virus, rhinoviruses, polioviruses, coxsackieviruses, echo viruses, rubeola virus, rubella virus, varicell-zoster virus, herpes viruses, herpes simplex virus, parvoviruses, cytomegalovirus, hepatitis viruses, human papillomavirus, alphaviruses, flaviviruses, bunyaviruses, rabies virus, arenaviruses, filoviruses, HIV 1, HIV 2, HTLV-1, HTLV-IT, FeLV, bovine LV, FeIV, canine distemper virus, canine contagious hepatitis virus, feline calicivirus, feline rhinotracheitis virus, TGE virus, foot and mouth disease virus, and combinations thereof.
[00232] In certain embodiments, one or more antigens of provided vaccines are tumor associated antigens. In some embodiments, the tumor-associated antigens are antigens selected from the group consisting of killed tumor cells and lysates thereof, MAGE-1, MAGE-3 and peptide fragments thereof; human chorionic gonadotropin and peptide fragments thereof; carcinoembryonic antigen and peptide fragments thereof, alpha fetoprotein and peptide fragments thereof; pancreatic oncofetal antigen and peptide fragments thereof; MUC-1 and peptide fragments thereof, CA 125, CA 15-3, CA 19-9, CA 549, CA 195 and peptide fragments thereof; prostate-specific antigens and peptide fragments thereof; prostate-specific membrane antigen and peptide fragments thereof; squamous cell carcinoma antigen and peptide fragments thereof; ovarian cancer antigen and peptide fragments thereof; pancreas cancer associated antigen and peptide fragments thereof; Herl/neu and peptide fragments thereof; gp-100 and peptide fragments thereof; mutant K-ras proteins and peptide fragments thereof; mutant p53 and peptide fragments thereof; truncated epidermal growth factor receptor, chimeric protein p21 0 BCR ABL, KH-1, N3, GM1, GM2, GD2, GD3, Gb3, Globo-H, STn, Tn, Lewis', Lewisy, TF; and mixtures thereof.
[002331 In certain embodiments, an antigen is covalently bound to a compound of formula I, II, III, or IV. In some embodiments, an antigen is not covalently bound to a compound of formula I,II, III, or IV.
[00234] One of ordinary skill in the art will appreciate that vaccines may optionally include a pharmaceutically acceptable excipient or carrier. Thus, according to another aspect, provided vaccines comprise one or more antigens that are optionally conjugated to a pharmaceutically acceptable excipient or carrier. In some embodiments, said one or more antigens are conjugated covalently to a pharmaceutically acceptable excipient. In other embodiments, said one or more antigens are non-covalently associated with a pharmaceutically acceptable excipient.
[00235] As described above, adjuvants may be used to increase the immune response to an antigen. According to the invention, provided vaccines may be used invoke an immune response when administered to a subject. In certain embodiments, an immune response to an antigen may be potentiated by administering to a subject a provided vaccine in an effect amount to potentiate the immune response of said subject to said antigen.
[002361 As described above, provided compounds may be used in cancer vaccines as adjuvants in combination with tumor-associated antigens. In certain embodiments, said vaccines may be used in the treatment or prevention of neoplasms. In certain embodiments, the neoplasm is a benign neoplasm. In other embodiments, the neoplasm is a malignant neoplasm. Any cancer may be treated using compounds of the invention with an antigen.
[00237] In certain embodiments, the malignancy is a hematological malignancy. Hematological malignancies are types of cancers that affect the blood, bone marrow, and/or lymph nodes. Examples of hematological malignancies that may be treated using compounds of formulae I,II, III, or IV include, but are not limited to, acute lymphoblastic leukemia (ALL), acute myelogenous leukemia (AML), chronic myelogenous leukemia (CML), chronic lymphocytic leukemia (CLL), hairy cell leukemia, Hodgkin's lymphoma, non-Hodgkin's lymphoma, cutaneous T-cell lymphoma (CTCL), peripheral T-cell lymphoma (PTCL), Mantle cell lymphoma, B-cell lymphoma, acute lymphoblastic T cell leukemia (T-ALL), acute promyelocytic leukemia, and multiple myeloma.
[002381 Other cancers besides hematological malignancies may also be treated using compounds of formulae I,II, III, or IV. In certain embodiments, the cancer is a solid tumor. Exemplary cancers that may be treated using compounds of formulae I,II, III, or IV include colon cancer, lung cancer, bone cancer, pancreatic cancer, stomach cancer, esophageal cancer, skin cancer, brain cancer, liver cancer, ovarian cancer, cervical cancer, uterine cancer, testicular cancer, prostate cancer, bladder cancer, kidney cancer, neuroendocrine cancer, breast cancer, gastric cancer, eye cancer, gallbladder cancer, laryngeal cancer, oral cancer, penile cancer, glandular tumors, rectal cancer, small intestine cancer, sarcoma, carcinoma, melanoma, urethral cancer, vaginal cancer, to name but a few.
[002391 In certain embodiments, compounds and pharmaceutical compositions of the present invention can be employed in combination therapies, that is, the compounds and pharmaceutical compositions can be administered concurrently with, prior to, or subsequent to, one or more other desired therapeutics or medical procedures. The particular combination of therapies (therapeutics or procedures) to employ in a combination regimen will take into account compatibility of the desired therapeutics and/or procedures and the desired therapeutic effect to be achieved. It will also be appreciated that the therapies employed may achieve a desired effect for the same disorder (for example, an inventive compound may be administered concurrently with another antiproliferative agent), or they may achieve different effects (e.g., control of any adverse effects).
[00240] For example, other therapies or anticancer agents that may be used in combination with the inventive anticancer agents of the present invention include surgery, radiotherapy (y radiation, neutron beam radiotherapy, electron beam radiotherapy, proton therapy, brachytherapy, and systemic radioactive isotopes, to name a few), endocrine therapy, biologic response modifiers (interferons, interleukins, and tumor necrosis factor (TNF) to name a few), hyperthermia and cryotherapy, agents to attenuate any adverse effects (e.g., antiemetics), and other approved chemotherapeutic drugs, including, but not limited to, alkylating drugs (mechlorethamine, chlorambucil, Cyclophosphamide, Melphalan, Ifosfamide), antimetabolites (Methotrexate), purine antagonists and pyrimidine antagonists (6-Mercaptopurine, 5 Fluorouracil, Cytarabile, Gemcitabine), spindle poisons (Vinblastine, Vincristine, Vinorelbine, Paclitaxel), podophyllotoxins (Etoposide, Irinotecan, Topotecan), antibiotics (Doxorubicin, Bleomycin, Mitomycin), nitrosoureas (Carmustine, Lomustine), inorganic ions (Cisplatin, Carboplatin), enzymes (Asparaginase), and hormones (Tamoxifen, Leuprolide, Flutamide, and Megestrol), to name a few. Additionally, the present invention also encompasses the use of certain cytotoxic or anticancer agents currently in clinical trials and which may ultimately be approved by the FDA (including, but not limited to, epothilones and analogues thereof and geldanamycins and analogues thereof). For a more comprehensive discussion of updated cancer therapies see, www.nci.nih.gov, a list of the FDA approved oncology drugs at www.fda.gov/cder/cancer/druglistframe.htm, and The Merck Manual, Seventeenth Ed. 1999, the entire contents of which are hereby incorporated by reference.
[00241] In another aspect, the invention provides a method of treating infectious disease in a subject comprising administering to the subject a therapeutically effective amount of a compound of formulae I,II, III, or IV. In some embodiments, the infection is bacterial. In some embodiments, the infection is viral. In some embodiments, the infection is protozoal. In some embodiments, the subject is human.
Formulations
[00242] Inventive compounds may be combined with a pharmaceutically acceptable excipient to form a pharmaceutical composition. In certain embodiments, the pharmceutical composition includes a pharmaceutically acceptable amount of an inventive compound. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, and the particular mode of administration. The amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, this amount will range from about 1% to about 99% of active ingredient, preferably from about 5% to about 70%, most preferably from about 10% to about %.
[002431 Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
[00244] Examples of pharmaceutically-acceptable antioxidants include: water soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabisulfite, sodium sulfite and the like; oil-soluble antioxidants, such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and metal chelating agents, such as citric acid, ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
[002451 Formulations of the present invention include those suitable for oral, nasal, topical (including buccal and sublingual), rectal, vaginal and/or parenteral administration. The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. In certain embodiments, a formulation of the present invention comprises an excipient selected from the group consisting of cyclodextrins, liposomes, micelle forming agents, e.g., bile acids, and polymeric carriers, e.g., polyesters and polyanhydrides; and a compound of the present invention. In certain embodiments, an aforementioned formulation renders orally bioavailable a compound of the present invention.
[002461 Methods of preparing these formulations or compositions include the step of bringing into association a compound of the present invention with the carrier and, optionally, one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
[00247] Formulations of the invention suitable for oral administration may be in the form of capsules, cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in-water or water-in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient. A compound of the present invention may also be administered as a bolus, electuary or paste.
[002481 In solid dosage forms of the invention for oral administration (capsules, tablets, pills, dragees, powders, granules and the like), the active ingredient is mixed with one or more pharmaceutically-acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; humectants, such as glycerol; disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; solution retarding agents, such as paraffin; absorption accelerators, such as quaternary ammonium compounds; wetting agents, such as, for example, cetyl alcohol, glycerol monostearate, and non-ionic surfactants; absorbents, such as kaolin and bentonite clay; lubricants, such as talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof; and coloring agents. In the case of capsules, tablets and pills, the pharmaceutical compositions may also comprise buffering agents. Solid compositions of a similar type may also be employed as fillers in soft and hard-shelled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
[00249] A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Molded tablets may be made in a suitable machine in which a mixture of the powdered compound is moistened with an inert liquid diluent.
[00250] The tablets, and other solid dosage forms of the pharmaceutical compositions of the present invention, such as dragees, capsules, pills and granules, may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres. They may be formulated for rapid release, e.g., freeze-dried. They may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use. These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. The active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
[00251] Liquid dosage forms for oral administration of the compounds of the invention include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active ingredient, the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
[00252] Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
[002531 Suspensions, in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
[00254] Formulations of the pharmaceutical compositions of the invention for rectal or vaginal administration may be presented as a suppository, which may be prepared by mixing one or more compounds of the invention with one or more suitable nonirritating excipients or carriers comprising, for example, cocoa butter, polyethylene glycol, a suppository wax or a salicylate, and which is solid at room temperature, but liquid at body temperature and, therefore, will melt in the rectum or vaginal cavity and release the active compound.
[00255] Formulations of the present invention which are suitable for vaginal administration also include pessaries, tampons, creams, gels, pastes, foams or spray formulations containing such carriers as are known in the art to be appropriate.
[002561 Dosage forms for the topical or transdermal administration of a compound of this invention include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. The active compound may be mixed under sterile conditions with a pharmaceutically-acceptable carrier, and with any preservatives, buffers, or propellants which may be required.
[00257] The ointments, pastes, creams and gels may contain, in addition to an active compound of this invention, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
[002581 Powders and sprays can contain, in addition to a compound of this invention, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
[00259] Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body. Dissolving or dispersing the compound in the proper medium can make such dosage forms. Absorption enhancers can also be used to increase the flux of the compound across the skin. Either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel can control the rate of such flux.
[002601 Ophthalmic formulations, eye ointments, powders, solutions and the like, are also contemplated as being within the scope of this invention.
[002611 Pharmaceutical compositions of this invention suitable for parenteral administration comprise one or more compounds of the invention in combination with one or more pharmaceutically-acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain sugars, alcohols, antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
[00262] Examples of suitable aqueous and nonaqueous carriers, which may be employed in the pharmaceutical compositions of the invention include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
[002631 These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms upon the subject compounds may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption such as aluminum monostearate and gelatin.
[00264] In some cases, in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally-administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
[00265] Injectable depot forms are made by forming microencapsule matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions, which are compatible with body tissue.
[002661 In certain embodiments, a compound or pharmaceutical preparation is administered orally. In other embodiments, the compound or pharmaceutical preparation is administered intravenously. Alternative routs of administration include sublingual, intramuscular, and transdermal administrations.
[00267] When the compounds of the present invention are administered as pharmaceuticals, to humans and animals, they can be given per se or as a pharmaceutical composition containing, for example, 0.1% to 99.5% (more preferably, 0.5% to 90%) of active
ingredient in combination with a pharmaceutically acceptable carrier.
[002681 The preparations of the present invention may be given orally, parenterally, topically, or rectally. They are of course given in forms suitable for each administration route. For example, they are administered in tablets or capsule form, by injection, inhalation, eye lotion, ointment, suppository, etc. administration by injection, infusion or inhalation; topical by lotion or ointment; and rectal by suppositories. Oral administrations are preferred.
[002691 These compounds may be administered to humans and other animals for therapy by any suitable route of administration, including orally, nasally, as by, for example, a spray, rectally, intravaginally, parenterally, intracisternally and topically, as by powders, ointments or drops, including buccally and sublingually.
[00270] Regardless of the route of administration selected, the compounds of the present invention, which may be used in a suitable hydrated form, and/or the pharmaceutical compositions of the present invention, are formulated into pharmaceutically-acceptable dosage forms by conventional methods known to those of skill in the art.
[00271] Actual dosage levels of the active ingredients in the pharmaceutical compositions of this invention may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
[00272] The selected dosage level will depend upon a variety of factors including the activity of the particular compound of the present invention employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion or metabolism of the particular compound being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
[002731 A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the compounds of the invention employed in the pharmaceutical composition at levels lower than that required to achieve the desired therapeutic effect and then gradually increasing the dosage until the desired effect is achieved.
[00274] In some embodiments, a compound or pharmaceutical composition of the invention is provided to a subject chronically. Chronic treatments include any form of repeated administration for an extended period of time, such as repeated administrations for one or more months, between a month and a year, one or more years, or longer. In many embodiments, a chronic treatment involves administering a compound or pharmaceutical composition of the invention repeatedly over the life of the subject. Preferred chronic treatments involve regular administrations, for example one or more times a day, one or more times a week, or one or more times a month. In general, a suitable dose such as a daily dose of a compound of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above. Generally doses of the compounds of this invention for a patient, when used for the indicated effects, will range from about 0.0001 to about 100 mg per kg of body weight per day. Preferably the daily dosage will range from 0.001 to 50 mg of compound per kg of body weight, and even more preferably from 0.01 to 10 mg of compound per kg of body weight. However, lower or higher doses can be used. In some embodiments, the dose administered to a subject may be modified as the physiology of the subject changes due to age, disease progression, weight, or other factors.
[00275] In some embodiments, provided adjuvant compounds are administered as pharmaceutical compositions or vaccines. In certain embodiments, the amount of adjuvant compound administered is 1-2000 pg. In certain embodiments, the amount of adjuvant compound administered is 1-1000 pg. In certain embodiments, the amount of adjuvant compound administered is 1-500 pg. In certain embodiments, the amount of adjuvant compound administered is 1-250 pg. In certain embodiments, the amount of adjuvant compound administered is 100-1000 pg. In certain embodiments, the amount of adjuvant compound administered is 100-500 pg. In certain embodiments, the amount of adjuvant compound administered is 100-200 pg. In certain embodiments, the amount of adjuvant compound administered is 250-500 pg. In certain embodiments, the amount of adjuvant compound administered is 10-1000 pg. In certain embodiments, the amount of adjuvant compound administered is 500-1000 pg. In certain embodiments, the amount of adjuvant compound administered is 50-250 pg. In certain embodiments, the amount of adjuvant compound administered is 50-500 pg.
[002761 If desired, the effective daily dose of the active compound may be administered as two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms.
[002771 While it is possible for a compound of the present invention to be administered alone, in certain embodiments the compound is administered as a pharmaceutical formulation (composition) as described above.
[00278] The compounds according to the invention may be formulated for administration in any convenient way for use in human or veterinary medicine, by analogy with other pharmaceuticals.
[00279] The invention provides kits comprising pharmaceutical compositions of an inventive compound. In certain embodiments, such kits including the combination of a compound of formulae I,II, III, or IV and an antigen. The agents may be packaged separately or together. The kit optionally includes instructions for prescribing the medication. In certain embodiments, the kit includes multiple doses of each agent. The kit may include sufficient quantities of each component to treat a subject for a week, two weeks, three weeks, four weeks, or multiple months. The kit may include a full cycle of immunotherapy. In some embodiments, the kit includes a vaccine comprising one or more bacterial, viral, protozoal, or tumor-associated antigens, and one or more provided compounds.
[002801 The entire contents of all references cited above and herein are hereby incorporated by reference.
[002811 The foregoing written specification is considered to be sufficient to enable one skilled in the art to practice the invention. The present invention is not to be limited in scope by examples provided, since the examples are intended as a single illustration of one aspect of the invention and other functionally equivalent embodiments are within the scope of the invention. Various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and fall within the scope of the appended claims. The advantages and objects of the invention are not necessarily encompassed by each embodiment of the invention.
EXAMPLES
Example 1
[00282] The synthesis of the hexasaccharide fragment within QS-7-Api (Figure 1) required initial preparation of the selectively protected monosaccharides 2-4, 6, and 8 (Scheme 7). While the xylo-, gluco- and apio-derived monosaccharides 2-4 (Scheme 7A) were obtained in multi-step sequences by previously reported procedures and modifications thereof (Kim, Y. J.; Wang, P.; Navarro-Villalobos, M.; Rohde, B. D.; Derryberry, J.; Gin, D. Y. J. Am. Chem. Soc. 2006,128,11906-11915; Nguyen, H. M.; Chen, Y. N.; Duron, S. G.; Gin, D. Y. J. Am. Chem. Soc. 2001, 123, 8766-8772) the novel sugars 6 and 8 were prepared from rhamnopyranose 5 and fucopyranoside 7, respectively. Silylation of the selectively-protected rhamnopyranose 5 (Scheme 7B) with TIPSOTf provided the a-TIPS glycoside (96%), which subsequently underwent C4-0-debenzylation to furnish the rhamnopyranoside 6 (98%). Synthesis of the fucosyl residue within QS-7 commenced with selective C3-0-alkylation of the allyl fucopyranoside 7 (Scheme 7C) with PMBCl (56%) via its transient stannylene acetal. This allowed for sequential selective silylation of the equatorial C2-OH (97%) and acetylation of the axial C4-OH (>99%). Finally, oxidative removal of the PMB ether with DDQ provided the selectively-protected fucopyranoside 8 (86%).
Scheme 7" (A) HO, C 3C AcO OAc BnONI 4L3OBn HN B O Bn Ac O n 2 3 OBn 4
OR' f= (B) 5 R' H (C) OARy1 =H 2 R 0 , a,b R=B R1 \.M c-f 0 R10 0 -Me 6 RO=TIPS HR2 TBS 2 Me R =H R R A
"Reagents and conditions: (a) TIPSOTf, 2,6-lutidine, CH 2 Cl2 , 0->23 °C, 96%; (b) H2 , Pd-C, MeOH, 23 °C, 98%; (c) n-Bu 2 SnO, PhMe, reflux; CsF; PMBCl, DMF, 23 °C, 56%; (d) TBSCl, imidazole, DMAP, CH 2 Cl2 ,23 C, 97%; (e) Ac 2 0, Et3N, DMAP, CH 2Cl2,23 °C, >99%; (f) DDQ, MeOH, H2 0, 0->23 °C, 86%.
[002831 Convergent assembly of the branched hexasaccharide (Scheme 8) involved dehydrative glycosylation (Ph2 SO•Tf 2 ) (Garcia, B. A.; Gin, D. Y. J. Am. Chem. Soc. 2000,122, 4269-4279) of fucopyranoside 8 with rhamnopyranose 5 (84%). The resulting a-disaccharide 9 then underwent a series of protective group exchanges, including TBS removal (95%), a novel Et 2Zn/Pd(PPh 3) 4-mediated anomeric de-allylation (68%), (Chandrasekhar, S.; Reddy, C. R.; Rao, R. J. Tetrahedron 2001, 57, 3435-3438) and selective anomeric silylation (75%) to afford the disaccharide 10 as a suitable glycosyl acceptor. Its glycosyl donor coupling partner was prepared by chemo- and stereoselective dehydrative glycosylation of rhamnopyranoside 6 with xylopyranose 2 to afford the $-disaccharide 11 (75%), which directly underwent modified Helferich glycosylation (Roush, W. R.; Bennett, C. E. J. Am. Chem. Soc. 1999,121, 3541-3542) with the apiose-derived donor 4 to afford trisaccharide 12 (86%). The acetate esters in 12 were then exchanged for a benzylidene acetal protective group (94%), followed by selective acid hydrolysis of the rhamno-derived isopropylidene ketal to afford the corresponding vicinal diol (71%). Selective alkylation of the resulting axial rhamno-C2-OH with BnBr could then be accomplished (84%), allowing for Schmidt glycosylation (Schmidt, R. R.; Kinzy, W. Adv. Carbohydr. Chem. Biochem. 1994, 50, 21-123) of the C3-OH with the glucosyl imidate 3 to afford the tetrasaccharide 13 ( 8 6 %). Exchange of the benzoate ester for a TES ether ( 9 1%, 2
steps) and conversion of the anomeric TIPS group to its a-trichloroacetimidate counterpart 14 (92%, 2 steps) secured a suitable donor for glycosylation of disaccharide 10. This was accomplished by treating the two components with TMSOTf to afford hexasaccharide 15 (62%), whose fucosyl-TIPS-acetal was then transformed to the a-trichloroacetimidate 16 ( 8 4 %, 2 steps).
Scheme 8" 5+8 6+ 2
BnO OAIyI .OH TBSO k-Me MeMe QAc O e Bn Me 00 BnOO 11 0 O OTIPS o oT P 9 me BnO AcO Ac
b-d Me LO OBn TIPSO e ne HO Me 0MOffi, 12 OAc 0
BnO OTIPS H Ph
1M O gsk BnO 10 Md me 0 OBn
X SO On-ON
BnOO O'\ Me Me O ~13XOTPS nn 0- oOBn n I-rR=Bz O O r14 X = OC(NH)CC 3
0 Ac / 15 X = p3-OTPS Mn q~r( BnO 04 16 X= ct-OC(NH)CC1 3
Me' Me
"Reagents and conditions: (a) Ph 2SO, Tf2 O, TBP, CH 2Cl2,-78->23 °C, 84%; (b) TBAF, THF, ->23 °C, 95%; (c) Et2Zn, Pd(PPh 3) 4, Et20,23 °C; 68%; (d) TIPSCl, imidazole, DMAP, DMF, 23 °C, 75%; (e) Ph2SO, Tf2 O, TBP, CH 2Cl2 ,-78->23 °C, 75%; (f) 4, TBSOTf, CH 2Cl 2 , 0 C, 86%; (g) K 2 C03 , H2 0, MeOH, 23 °C; (h) PhCH(OMe) 2 ,p-TsOH, 23 °C, 94% (2 steps); (i)p TsOH, H2 0, MeOH, 23 °C, 710%; () BnBr, Bu4NBr, NaOH, H 2 0, CH 2Cl 2 , 23 °C, 84%; (k) 3, TMSOTf, Et20,-45 °C, 86%; (1) DIBAL-H, CH 2Cl 2 ,-78 °C, 92%; (m) TESOTf, 2,6-lutidine, CH2 Cl2 , 0->23 °C, 99%; (n) TBAF, THF, 0 °C, >99%; (o) CCl 3 CN, DBU, CH 2Cl 2 , 0 C, 92%; (p) TMSOTf, 4A ms, CH 2 Cl 2 ,-15 °C, 62%; (q) TBAF, THF, 0 °C; (r) CCl 3CN, DBU, CH 2Cl 2 ,
->23 °C, 84% (2 steps).
[00284] Late stage construction of the full QS-7-Api skeleton involved the elaborately protected triterpene-trisaccharide conjugate 18 (Scheme 9A), previously prepared from glucuronolactone 17 during the course of the synthesis of QS-21 (Kim, et al., supra). This C28 carboxylic acid glycosyl acceptor 18 responded well to glycosylation with trichloroacetimidate glycosyl donor 16 (BF 3•OEt 2) to afford fully protected QS-7-Api (71%), which underwent global deprotection under carefully managed conditions (TFA; H2 , Pd-C). The resulting product (71 %) was found to be identical to naturally derived QS-7-Api (1) (trace quantities of natural QS-7-Api (~70% purity, NMR) were obtained from exhaustive RP-HPLC purification of commercial Quil A ($90/g).
[00285] This synthesis of 1 (Scheme 9A) from de novo construction of all oligosaccharide fragments confirms the structure of QS-7-Api and provides significantly more dependable access to homogeneous samples of 1 than isolation from natural sources. This notwithstanding, the synthesis of 1 can be further augmented. Quil-A (19, Scheme 9B) is a commercially available semi-purified extract from Quillajasaponariaand contains variable quantities of >50 distinct saponins (Vansetten, supra), many of which incorporate the triterpene-trisaccharide substructure within QS-7 (and QS-21). This monodesmoside saponin 20 (Scheme 9B) can be isolated in semi pure form via direct base hydrolysis of the Quil-A mixture (Higuchi et al., supra). Subsequent poly(silylation) of 20 with excess TESOTf afforded the corresponding nonakis(triethylsilyl ether) (257 mg from 1.15 g of 19), whose glucuronic acid functionality could be selectively derivatized to the benzyl ester 21 (CbzCl, 68%). This triterpene-trisaccharide conjugate, obtained in only a 3-step protocol from Quil-A (19), was an effective donor in a C28-carboxylate glycosylation (80%) with hexasaccharide 16 to provide, after global deprotection, QS-7-Api (1) (77%). The evolution of the first synthesis of 1 to this semi-synthetic variant furnishes complex QS-saponin adjuvants (and likely non-natural analogues) with markedly enhanced facility, enabling heretofore untapped opportunities for novel adjuvant discovery in antitumor and antiviral vaccine development.
Scheme 9"
[18 steps; Ref. 13] 1 18 3 a, b - R , R =Bn - QS-7-Api (1) H 2 = SiEt 3 O (A) OH 0:. 0 OH R 3 me H OH R 02C MeMe2
1 RR R 20: OR2 C 0 d0 210~ R -O (B) Quil-A (19)
1 2 3 R1, R3 SiEt3 - QS-7-Api (1) R 3 =H2, R ,R R1,R H R Bn
"Reagents and conditions: (a) 16, BF 3•OEt 2,4A ins, CH 2 Cl2 ,-78->23 °C, 71%; (b) TFA, H2 0, CH2 Cl2 , 0°C; H 2,Pd-C, EtOH, THF, 23 °C, 71%; (c) KOH, EtOH, H20, 80 °C; (d) TESOTf, Py, 40 °C; (e) CbzCl, Py, TBP, CH 2Cl 2,23 C, 68%; (f) 16, BF 3 •OEt 2,4A ins, CH 2Cl 2 ,-78->23 °C, 80%; (g) H2 , Pd-C, EtOH, THF, 23 °C; TFA, H2 0, 0 °C, 77%.
Experimental Procedures General Procedures.
[00286] Reactions were performed in flame-dried sealed-tubes or modified Schlenk (Kjeldahl shape) flasks fitted with a glass stopper under a positive pressure of argon, unless otherwise noted. Air- and moisture-sensitive liquids and solutions were transferred via syringe. The appropriate carbohydrate and sulfoxide reagents were dried via azeotropic removal of water with toluene. Molecular sieves were activated at 350 °C and were crushed immediately prior to use, then flame-dried under vacuum. Organic solutions were concentrated by rotary evaporation below 30 °C. Flash column chromatography was performed employing 230-400 mesh silica gel. Thin-layer chromatography was performed using glass plates pre-coated to a depth of 0.25 mm with 230-400 mesh silica gel impregnated with a fluorescent indicator (254 nm).
Materials.
[00287] Lyophilized QS saponin Quil-A (batch L77-244) was obtained from Brenntag Biosector (Frederikssund, Denmark) via distribution by Accurate Chemical and Scientific Corporation (Westbury, NY). Dichloromethane, tetrahydrofuran, diethyl ether, hexane, toluene, and benzene were purified by passage through two packed columns of neutral alumina under an argon atmosphere. Methanol was distilled from magnesium at 760 Torr. Trifluoromethanesulfonic anhydride was distilled from phosphorus pentoxide at 760 Torr. Boron trifluoride diethyl etherate and pyridine were distilled from calcium hydride at 760 Torr. Dimethylformamide was dried over 4A molecular sieves. All other chemicals were obtained from commercial vendors and were used without further purification unless noted otherwise.
Instrumentation.
[002881 Infrared (IR) spectra were obtained using a Perkin Elmer Spectrum BX spectrophotometer or a Bruker Tensor 27. Data are presented as the frequency of absorption (cm-1). Proton and carbon-13 nuclear magnetic resonance ('H NMR and "C NMR) spectra were recorded on a Varian 400, a Varian 500, a Varian Inova 500, or a Bruker Avance III instrument; chemical shifts are expressed in parts per million (6 scale) downfield from tetramethylsilane and are referenced to the residual protium in the NMR solvent (CHC1 3 : 6 7.26 for IH NMR, 6 77.16 for 1C NMR). Data are presented as follows: chemical shift, multiplicity (s = singlet, bs = broad singlet, d = doublet, bd = broad doublet, t = triplet, q = quartet, m = multiplet and/or multiple
resonances), coupling constant in Hertz (Hz), integration, assignment. RP-HPLC purification and analyses were carried out on a Waters 2545 binary gradient HPLC system equipped with a Waters 2996 photodiode array detector, and absorbances were monitored at a wavelength of 214 nm. PREPARATION OF THE HEXASACCHARIDE
OH OTIPS
BnO BnO-04 5 YVM' 5Me O Me 0 S
[00289] O-Triisopropyl 4-0-benzyl-2,3-di-0-isopropylidene-a-L-rhamnopyranoside (Si). To a solution of rhamnopyranoside 5 (Nguyen, H. M.; Poole, J. L.; Gin, D. Y. Angew. Chem. Int. Ed. 2001, 40, 414-417) (6.00 g, 20.4 mmol, 1.00 equiv) in dichloromethane (100 mL) at 0 °C was added 2,6-lutidine (8.30 mL, 71.4 mmol, 3.50 equiv) and triisopropylsilyl trifluoromethanesulfonate (9.30 mL, 34.7 mmol, 1.70 equiv). The reaction was stirred at this temperature for 1 h and then at 23 °C for 3 h. Saturated aqueous NaHCO 3 (150 mL) was added, and the aqueous layer was extracted with dichloromethane (3 x 150 mL). The combined organic phase was washed with saturated aqueous NaCl (150 mL), dried (Na 2SO 4), filtered and
concentrated. Silica gel chromatography (hexane/ethyl acetate 20:1) afforded a-anomer S1 (8.8 g, 20 mmol, 96% yield) as a colorless liquid. 'H NMR (CDCl 3 , 500 MHz) 6 7.39-7.33 (in, 4H, aromatic), 7.30-7.26 (in, 1H, aromatic), 5.38 (s, 1H, H-1), 4.93 (d, J= 10.2 Hz, 1H, PhCH 2 -), 4.65 (d, J= 10.2 Hz, 1H, PhCHf-), 4.32 (dd, J= 7.0, 5.6 Hz, 1H, H-3), 4.13 (d, J= 5.6 Hz, 1H, H-2), 3.95 (qd, J= 9.9, 6.2 Hz, 1H, H-5), 3.25 (dd, J= 9.9, 7.0 Hz, 1H, H-4), 1.53 (s, 3H, Me), 1.40 (s, 3H, Me), 1.29 (d, J= 6.3 Hz, 3H, Me), 1.18-1.08 (in,21H, Si-i-Pr 3); 3 C NMR (125 MHz, CDCl3) 6 138.51, 128.41, 128.17, 127.76, 109.31, 91.80, 81.56, 78.80, 78.15, 73.25, 64.54, 28.23, 26.66, 17.89, 17.81, 12.04; FTIR (neat film) 3032, 2941, 2896, 2868, 1463, 1382, 1370, 1243, 1220, 1081, 1058, 1020, 995, 883 cm-f.
OTIPS OTIPS Mei-0 Me-0 BnO!7- HO
S1 Me 0 Me 0 6
[0001] O-Triisopropyl 2,3-di-0-isopropylidene-a-L-rhamnopyranoside (6). To a solution of S1 (5.90 g, 13.1 mmol, 1.00 equiv) in methanol (100 mL) was added 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (1.4 g, 0.65 mmol, 0.050 equiv). The reaction mixture was vigorously stirred under hydrogen pressure (110 psi) for 7.5 h and was then filtered through a Celite 545 plug, which was rinsed with dichloromethane. The filtrate and rinsings were concentrated, and the residue was subjected to silica gel chromatography (hexane/ethyl acetate 3:1) to afford 6 (4.6 g, 1.3 mmol, 98% yield) as a colorless oil. 1H NMR (CDC 3, 500 MHz) 6 5.34 (s, 1H, H-1), 4.16-4.10 (in, 2H, H-2 and H-3), 3.91 (qd, J= 8.8, 6.3
Hz, 1H,H-5),3.42 (ddd,J= 11.6,6.8,4.8 Hz, 1H,H-4),2.33 (d,J=4.8 Hz, 1H, -OH), 1.53 (s, 3H, Me), 1.37 (s, 3H, Me), 1.28 (d, J= 6.3 Hz, 3H, Me), 1.18-1.05 (in,21H, Si-i-Pr 3); 1C NMR (125 MHz, CDCl 3) 6 109.5, 91.9, 78.2, 77.6, 74.4, 66.0, 28.0, 26.2, 17.8, 17.68, 17.66, 11.9; FTIR (neat film) 3463 (br), 2942, 2868, 1464, 1383, 1244, 1220, 1051, 1015, 883, 852, 807 cm-.
OAllyl OAllyl
HO Me - HO Me HOOH PMBOOH 7 S2
[00290] Allyl 3-0-methoxybenzyl-a-D-fucopyranoside (S2). Allyl fucoside 7 (111 mg, 0.543 mmol, 1.00 equiv) and dibutyltin oxide (125 mg, 0.502 mmol equiv) in toluene (10 mL) were refluxed for 5 h in a Dean-Stark apparatus. After the reaction mixture cooled to 23 °C, CsF (152 mg, 1.0 mmol) was added, and the solvent was evaporated. Dimethylformamide (3.0 mL) andp-methoxybenzyl chloride (0.136 mL, 1.0 mmol, 2.0 equiv) were added, and the reaction mixture was stirred at 23 °C for 48 h. The solvent was evaporated, and residue taken up in dichloromethane and filtered. The filtrate and rinsings were concentrated, and silica gel chromatography (hexane/ethyl acetate 1:1) afforded S2 (98 mg, 0.30 mmol, 56%) as a colorless oil. 1H NMR (500 MHz, CDCl 3) 6 7.32-7.29 (in, 2H), 6.90-6.88 (in, 2H), 5.92 (in, 1H), 5.30 (dq, J= 17.2, 1.6 Hz, 1H), 5.21 (dq, J= 10.4,1.2 Hz, 1H), 4.93 (d, J= 4.0 Hz, 1H), 4.68 (d, J= 11.6 Hz, 1H, PhCH 2 -),4.64 (d, J= 11.6 Hz, 1H, PhCH 2-),4.20 (ddt, J= 12.8, 5.4,1.4 Hz, 1H), 4.05 (ddt, J= 12.8, 6.2,1.3 Hz, 1H), 4.00-3.89 (in, 2H), 3.81 (s, 3H, OMe), 3.80 (in, 1H), 3.64 (dd, J = 9.7, 3.2 Hz, 1H), 2.40 (s, 1H), 2.11 (d, J= 8.4 Hz, 1H), 1.30 (d, J= 6.6 Hz, 3H); 3C NMR (125 MHz, CDCl3) 6 159.5, 133.8, 130.0, 129.5, 117.7, 114.0, 97.7, 78.5, 71.8, 69.5, 68.5, 68.3, 65.7, 55.3, 16.2. FTIR (neat film) 3462 (br), 3077, 2979, 2907, 2838, 1612, 1514, 1249, 1088, 1037, 821 cm-.
OAllyl OAllyl
HO Me _ TBSO .4Me PMBOOH PMBOOH S2 S3
[00291] O-Allyl 2-0-t-butyldimethylsilyl-3-0-methoxybenzyl-a-D-fucopyranoside (S3). Fucopyranoside S2 (205 mg, 0.632 mmol, 1.00 equiv), t-butyldimethylsilyl chloride (190 mg, 1.26 mmol, 1.99 equiv), imidazole (129 mg, 1.89 mmol, 3.00 equiv) and 4-(dimethylamino) pyridine (6.2 mg, 0.051 mmol, 0.080 equiv) were dissolved in dichloromethane (8.0 mL) and stirred at 23 °C for 27 h. The reaction mixture was directly purified by silica gel chromatography (hexane/ethyl acetate 7:3) to afford S3 (270 mg, 0.62 mmol, 97% yield). IH NMR (400 MHz, CDCl3 ) 6 7.32-7.26 (in, 2H), 6.92-6.85 (in, 2H), 5.94 (in, 1H), 5.34 (dq, J= 17.4, 1.4 Hz, 1H), 5.22 (dq, J= 10.3, 1.3 Hz, 1H), 4.79 (d, J= 3.8 Hz, 1H), 4.69 (d, J= 11.3 Hz, 1H, PhC 2 -), 4.56 (d, J= 11.3 Hz, 1H, PhCH 2 -), 4.19 (ddt, J= 13.0, 5.4, 1.3 Hz, 1H), 4.05 (ddt, J= 13.2, 6.5, 1.2 Hz, 1H), 3.99 (in, 1H), 3.95 (q, J= 6.5 Hz, 1H), 3.82 (s, 3H, OMe), 3.76-3.70 (in, 2H), 2.50 (s, 1H), 1.28 (d, J= 6.6 Hz, 3H), 0.93 (s, 9H), 0.10 (s, 3H), 0.09 (s, 3H); 3 C NMR (125 MHz, CDCl3 ) 6 159.31, 134.16, 130.43, 129.42, 117.73, 113.83, 98.34, 78.27, 72.28, 70.11, 69.29, 68.48, 65.31, 55.21, 25.86, 18.19, 16.17, -4.43, -4.69; FTIR (neat film) 3507 (br), 2953, 2930, 2899, 2857, 1613, 1514, 1250, 1106, 1040, 875, 837, 778 cm-.
OAllyl OAllyl
TBSO Me _ TBSO Me PMBO' DMBO OH Oc QRABI S3 S4
[00292] O-Allyl 4-0-acetyl-2-0-t-butyldimethylsilyl-3-0-methoxybenzyl-a-D fucopyranoside (S4). To fucopyranoside S3 (264 mg, 0.602 mmol, 1.00 equiv) and 4 (dimethylamino)-pyridine (7.3 mg, 0.060 mmol, 0.10 equiv) in dichloromethane (10 mL) was added triethylamine (0.25 mL, 1.8 mmol, 3.0 equiv) and acetic anhydride (0.17 mL, 0.80 mmol, 3.0 equiv). The reaction mixture was stirred at 23 °C for 22.5 h and then was concentrated and purified by silica gel chromatography (hexanes/ethyl acetate 17:3) to afford S4 (288 mg, 0.599 mmol, >99% yield) as a colorless oil. 'H NMR (500 MHz, CDCl 3) 6 7.24-7.21 (in, 2H), 6.85 6.82 (in, 2H), 5.92 (in, 1H), 5.36 (dd, J= 3.2, 1.0 Hz, 1H), 5.32 (dq, J= 17.2, 1.6 Hz, 1H), 5.21 (dq, J= 10.4, 1.2 Hz, 1H), 4.81 (d, J= 3.8 Hz, 1H), 4.60 (d, J= 10.6 Hz, 1H, PhCW-), 4.40 (d, J = 10.6 Hz, 1H, PhCW-), 4.18 (ddt, J= 13.1, 5.2, 1.2 Hz, 1H), 4.12-4.02 (in, 2H), 3.97 (dd, J= 9.9, 3.8 Hz, 1H), 3.78 (s, 3H), 3.77 (in, 1H), 2.14 (s, 3H), 1.14 (d, J= 6.5 Hz, 3H), 0.89 (s, 9H),
0.04(s, 3H), 0.03 (s, 3H); "CNMR(125 MHz, CDCl 3) 6 170.84,159.06,134.07,130.50, 129.58, 118.00, 113.56, 98.48, 76.12, 71.61, 71.08, 69.56, 68.74, 64.85, 55.24, 25.91, 20.96, 18.30, 16.25, -4.35, -4.90; FTIR (neat film) 2983, 2954, 2930, 2902, 2857, 1742, 1614, 1515, 1249, 1104, 1055. 1040, 1019, 837, 779, 735 cm-1 ; HRMS (ESI) m/z: Caled for C2 H4 O 7 Si (M+Na+) 503.2441, found 503.2437.
OAllyl OAllyl
TBSO Me TBSO Me PMABIO' ~ HO c S4 8
[00293] O-Allyl 4-0-acetyl-2-0-t-butyldimethylsilyl-a-D-fucopyranoside (8). To fucopyranoside S4 (100 mg, 0.208 mmol, 1.00 equiv) in dichloromethane (4 mL) and H2 0 (0.4 mL) at 0 °C was added 2,3-dichloro-5,6-dicyano-1,4-quinone (71 mg, 0.31 mmol, 1.5 equiv). After stirring at 0 °C for 10 min and at 23 °C for 2.5 h, reaction mixture was filtered through Celite 435, concentrated, and purified by silica gel chromatography (hexane/ethyl acetate 4:1) to afford 8 (65 mg, 0.18 mmol, 86% yield) as a colorless oil. 1 H NMR (500 MHz, CDCl 3) 6 5.90 (in, 1H), 5.32 (dq, J= 17.1, 1.6 Hz, 1H), 5.25 (dd, J= 3.5, 1.1 Hz, 1H), 5.20 (dq, J 10.4, 1.3 Hz, 1H), 4.81 (d, J= 3.7 Hz, 1H), 4.18 (ddt, J= 13.1, 5.3, 1.5 Hz, 1H), 4.09 (qd, J= 6.7, 1.0 Hz, 1H), 4.06 (dt, J= 10.0, 3.2 Hz, 1H), 4.00 (qt, J= 6.3, 1.2 Hz, 1H), 3.89 (dd, J= 10.0, 3.7 Hz, 1H), 2.16 (s, 3H), 2.05 (d, J= 3.0 Hz, 1H), 1.13 (d, J= 6.6 Hz, 3H), 0.90 (s, 9H), 0.11 (s, 3H), 0.10 (s, 3H); 3C NMR (100.6 MHz, CDCl 3) 6 171.12, 133.87, 117.79, 98.26, 73.27, 70.66, 68.80, 68.77, 65.03, 25.80, 20.86, 18.22, 16.11, -4.51, -4.59; FTIR (neat film) 3503, 2927, 1737, 1372, 1242, 1170, 1136, 1087, 1038, 939, 878, 839, 778 cm-'; HRMS (ESI) m/z: Calcd for C1 7 H 3 2 0Si (M+Na+) 383.1866, found 383.1864.
OH OAllyl
B9oMe OAIIyI TBSO Me
M0o TBSO OMe HOBBnO ce Me'Me OAc Bor 7 5 8 0 9 M'Me
[00294] O-Allyl 4-0-acetyl-[4-0-benzyl-2,3-di-0-isopropylidene-a-L rhamnopyranose-(1-3)]-2-0-t-butyldimethylsilyl-a-D-fucopyranoside (9). Trifluoromethanesulfonic anhydride (0.39 mL, 2.3 mmol, 2.8 equiv) was added to a solution of rhamnopyranose 5 (245 mg, 0.832 mmol, 1.00 equiv), phenyl sulfoxide (982 mg, 4.85 mmol, 5.83 equiv) and 2,4,6-tri-t-butylpyridine (1.21 g, 4.89 mmol, 5.88 equiv) in dichloromethane (25 mL) at -78 °C. After the reaction was stirred at -78 °C for 30 min and at -45 °C for 1.5 h, a solution of fucopyranoside 8 (150 mg, 0.416 mmol, 0.500 equiv) in dichloromethane (5.0 mL) was added via cannula. The reaction mixture was stirred at -45 °C for 1h, at 0 °C for 1 h and at 23 °C for 14 h. Triethylamine (0.1 mL) was added to the reaction mixture, which was concentrated and purified by silica gel chromatography (hexanes/ethyl acetate 17:3) to afford 9 (222 mg, 0.349 mmol, 84% yield) as a colorless oil. 1 H NMR (CDC 3 , 400 MHz) 6 7.38-7.22 (in, 5H), 5.90 (in, 1H), 5.23-5.16 (in, 3H), 4.88 (d, J= 12.0 Hz, 1H, PhCH 2-), 4.70 (d, J= 3.6
Hz, 1H), 4.63 (d, J= 12.0 Hz, 1H, PhCH 2-), 4.21-4.05 (in, 5H), 4.02-3.94 (in, 2H), 3.72 (dd, J 10.0, 6.5 Hz, 1H), 3.15 (dd, J= 9.6, 6.0 Hz, 1H), 2.20 (s, 3H, Me), 1.46 (s, 3H, Me), 1.32 (s, 3H, Me), 1.26 (d, J= 6.0 Hz, 3H), 1.09 (d, J= 6.8 Hz, 3H), 0.90 (s, 9H), 0.09 (s, 3H), 0.08 (s, 3H); 3C NMR (100 MHz, CDC1 3) 6 170.6, 138.8, 134.1, 128.6, 128.4, 128.3, 128.2, 117.9, 108.9, 99.7, 98.7, 81.0, 78.7, 76.3, 75.1, 73.9, 73.1, 70.2, 68.9, 65.38, 65.35, 28.2, 26.4, 26.0, 21.1, 18.2, 17.8, 16.3, -4.2, -4.6; FTIR (neat film) 3066, 3033, 2985, 2934, 2857, 2905, 1747, 1455, 1382, 1373, 1236, 1138, 1096, 1057, 1012, 937, 864, 777, 736, 698 cm-1; HRMS (ESI) m/z: Calcd for C 3 3 H5 20O1 0Si (M+NH) 654.3674, found 654.3672.
OAllyl OAllyl
TBSO 0Me HO 0 Me 0QAc 0 Ac M 0 ~ Me 0~ BnO -) BnO
MeMe 9 Me S5
[002951 O-Allyl 4-0-acetyl-[4-0-benzyl-2,3-di-0-isopropylidene-a-L rhamnopyranose-(1-3)]-a-D-fucopyranoside (S5). To a solution of disaccharide 9 (190 mg, 0.298 mmol, 1.00 equiv) in tetrahydrofuran (10 mL) at 0 °C was added tetrabutylammonium fluoride solution (1.0 M in tetrahydrofuran, 0.33 mL, 0.33 mmol, 1.1 equiv). After 15 min, the reaction mixture was warmed to 23 °C and was stirred at this temperature for 4 h. Silica gel (1 g) was added, the solvent was removed, and the reaction material was purified by silica gel chromatography (hexane/ethyl acetate 3:2) to afford SS (148 mg, 0.283 mmol, 95% yield).1 H NMR (CDCl3,500 MHz) 6 7.37-7.24 (in, 5H), 5.91 (in, 1H), 5.30 (in, 1H), 5.28 (s, 1H), 5.23 (in, 1H), 5.17 (dd, J= 3.5, 1.0 Hz, 1H), 4.94 (d, J= 3.5 Hz, 1H), 4.86 (d, J= 11.5 Hz,1H, PhCW-), 4.64 (d, J= 11.5 Hz, 1H, PhCH-), 4.24-4.16 (in, 3H), 4.08-4.01 (in, 2H), 3.99-3.88 (in, 2H), 3.72 (in, 1H), 3.18 (dd, J= 9.5, 6.5 Hz, 1H), 2.13 (s, 3H), 2.01 (d, J= 10.0 Hz, 1H), 1.47 (s, 3H), 1.35 (s, 3H), 1.26 (d, J= 6.5 Hz, 3H), 1.11 (d, J= 6.5 Hz, 3H); 3 C NMR (125 MHz, CDC 3
) 6 170.6, 138.7, 133.7, 128.4, 128.2, 127.8, 118.4, 109.2, 99.5, 98.1, 80.9, 76.3, 75.5, 73.3, 73.1, 69.4, 69.0, 65.8, 65.5, 28.2, 26.6, 21.0, 17.9, 16.4; FTIR (neat film) 3470 (br), 3032, 2985, 2936, 1744, 1454, 1381, 1237, 1168, 1092, 933, 863, 816, 737, 698 cm- 1; HRMS (ESI) m/z: Calcd for C27 H38 0 10 (M+Na+) 545.2363, found 545.2355.
OAllyl OH
HO 0Me HO 0 Me 0 OAcc BnOtQO BnOe A
S5 MeMe MeMe S6
[00296] 4-0-acetyl-[4-0-benzyl-2,3-di-0-isopropylidene-aX-L-rhamnopyranose (1-+3)-D-fucopyranose (S6). To disaccharide SS (80 mg, 0.15 mmol, 1.0 equiv) and Pd(PPh 3) 4 (18 mg, 0.015 mmol, 0.10 equiv) in diethyl ether (9.0 mL) was added Et2Zn solution (1.0 M in hexane, 1.53 mL, 1.53 mmol, 10.0 equiv). The reaction mixture was stirred at 23 °C for 10 h and then another portion of Pd(PPh 3) 4 (18 mg, 0.015 mmol, 0.10 equiv) was added. After 11 h, the reaction was diluted with ethyl acetate, followed by the addition of saturated aqueous NaCl. The aqueous phase was extracted by ethyl acetate (2 x 50mL). The combined organic phase was dried (MgSO4), filtered, concentrated, and the residue was purified by silica gel chromatography (hexanes/ethyl acetate 1:4) to afford the hemiacetal S6 as a mixture of anomers (50 mg, 0.10 mmol, 68% yield). Characteristic peaks: 1H NMR (500 MHz, CDCl 3) 6 7.37-7.25 (in, 5H), 4.87
(d, J= 11.3 Hz, 1H, PhCH 2-), 4.64 (d, J= 11.3 Hz, 1H, PhCH 2-),1.47 (s, 3H), 1.36 (s, 3H). The hemiacetal mixture was used immediately in the next silylation reaction.
OH
HO Me TIPS O O Me 0Ac 0Ac
nOMe7 BnO~ O
e Me S6 Me0 10
[00297] O-Triisopropylsilyl 4-0-acetyl-[4-0-benzyl-2,3-di-0-isopropylidene-a-L rhamnopyranose-(1-3)]- P-D-fucopyranoside (10). To a solution of hemiacetal S6 (57 mg, 0.12 mmol, 1.0 equiv), imidazole (64 mg, 0.94 mmol, 8.0 equiv) and 4-(dimethylamino)-pyridine (3mg, 0.02 mmol, 0.2 equiv) in dimethylformamide (0.5 mL) was treated with triisopropylsilylchloride (150 pL, 0.70 mmol, 5.9 equiv). The reaction was stirred at 23 °C for 4 h, then directly purified by silica gel chromatography (hexanes/ethyl acetate 4:1) to afford 10 (56 mg, 0.088 mmol, 75%) as a white powder.1 H NMR (CDCl 3, 500 MHz) 6 7.38-7.25 (in, 5H), 5.32 (s, 1H), 5.12 (dd, J= 3.0, 1.3 Hz, 1H), 4.85 (d, J= 12.0 Hz, 1H, PhCH2-), 4.64 (d, J= 12.0 Hz, 1H, PhCH 2 -), 4.55 (d, J= 7.5 Hz,1H), 4.18 (in,2H), 3.82-3.64 (in, 4H), 3.18 (in,1H), 2.18 (d, J= 2.0 Hz, 1H), 2.12 (s, 3H), 1.48 (s, 3H), 1.36 (s, 3H), 1.26 (d, J= 6.5 Hz, 3H), 1.14 (d, J= 6.5 Hz, 3H), 1.10-1.02 (in, 21H, Si-i-Pr 3); C3 NMR (125 MHz, CDC 3)6 170.8, 138.7, 128.4, 128.2, 127.8, 109.2, 99.2, 97.9, 80.9, 78.6, 76.7, 76.4, 74.2, 73.1, 72.7, 70.0, 65.5, 28.2, 26.6, 21.0, 18.05, 18.00, 17.9, 16.5, 12.5; FTIR (neat film) 3496 (br), 3089, 3064, 3032, 2938, 2866, 1744,1455, 1381, 1237, 1076, 737 cm-1; HRMS (ESI) m/z: Calcd for C 33Hs 40 9Si (M+Na+) 645.3435, found 645.3421.
BnO OTIPS OH Me Me 0 HO 6BO ~me OBn 0M OBn 6 M ete 2 OH 44 1 OTIPS
[00298] O-Triisopropylsilyl [2,4-di-O-benzyl-p-D-xylopyranosyl-(1-+4)]-2,3-di-0 isopropylidene-a-L-rhamnopyranoside (11). To a solution of xylopyranose 2 (140 mg, 0.424 mmol, 1.00 equiv), phenylsulfoxide (500 mg, 2.47 mmol, 5.83 equiv) and 2,4,6-tri-t butylpyridine (604 mg, 2.44 mmol, 5.78 equiv) in dichloromethane (16 mL) at -78 °C was added trifluoromethanesulfonic anhydride (0.20 mL, 1.19 mmol, 2.80 equiv). After 15 min, a solution of rhamnopyranoside 6 (305 mg, 0.846 mmol, 2.00 equiv) in dichloromethane (5 mL) was added via cannula. The reaction mixture was stirred at -78 °C for 15 min, at -45 °C for 30 min, at 0 °C for 30 min, at 23 °C for 10 h, at 35 °C for 5 h, and finally at 23 °C for another 9 h. The reaction mixture was diluted with dichloromethane (100 mL) and washed with saturated aqueous NaHCO 3 (2 x 100 mL) and saturated aqueous NaCl (2 x 100 mL). The aqueous washings were extracted with dichloromethane (150 mL), and the combined organic phase was dried (MgSO 4), filtered, and concentrated to furnish a cream-colored amorphous solid. Silica gel chromatography (hexanes/ethyl acetate 7:3) afforded 11 (215 mg, 75% yield) as a white amorphoussolid. 'HNMR(CDCl 3,500 MHz) 6 7.40-7.27 (in, 1OH), 5.37 (s, 1H), 4.94 (d,J= 11.5Hz,1H,PhCH 2-),4.92(d,J=7.2Hz,1H),4.75(d,J=12.0Hz,1H,PhCH 2-),4.66(d,J= 11.5 Hz, 1H, PhCH 2-), 4.64 (d, J= 12.0 Hz, 1H, PhCH 2-), 4.22 (dd, J= 7.0, 5.0 Hz, 1H), 4.06 (dd, J= 5.0, 0.5 Hz, 1H), 3.96 (dd, J= 11.5, 5.5 Hz, 1H), 3.87 (in, 1H), 3.72 (t, J= 9.0 Hz, 1H), 3.64 (dd, J= 10.0, 7.5 Hz, 1H), 3.53 (in, 1H), 3.24 (d, J= 10.0 Hz, 1H), 3.21 (t, J= 9.5 Hz, 2 H), 3.18 (d, J= 9.0 Hz, 1H), 1.51 (s, 3H), 1.36 (s, 3H), 1.26 (d, J= 6.0 Hz, 3H), 1.18-1.05 (in, 21H, 13 Si-i-Pr 3); C NMR (125 MHz, CDC 3) 6 170.8, 138.7, 128.4, 128.2, 127.8, 109.2, 99.2, 97.9, 80.9, 78.6, 76.7, 76.4, 74.2, 73.1, 72.7, 70.0, 65.5, 28.2, 26.6, 21.0, 18.05, 18.00, 17.9, 16.5, 12.5; FTIR (neat film) 3483 (br), 3031, 2942, 2867, 1497, 1455, 1383, 1242, 1221, 1085, 1018, 883, 809, 735, 697 cm-1; HRMS (ESI) m/z: Calcd for C 37 H6 O 9 Si (M+Na+) 695.3591, found 695.3594.
BnO BnO AcO-O-OAc
Me OH 4O Me M 010 OBn O MMee0 AcO QAc v MeOBn Me 'OM n O O OnOBe OBn12
OTIPS
[00299] O-Triisopropylsilyl {[2,3-di-O-acetyl-5-0-benzyl-p-D-apiofuranosyl-(1+-3)] 2,4-di-O-benzyl-p-D-xylopyranosyl-(1-4)]}-2,3-di-0-isopropylidene-a-L rhamnopyranoside (12). To a solution of 1,2,3-tri-O-acetyl-5--benzyl- -D-apiofuranoside (4) (466 mg, 1.27 mmol, 1.89 equiv) and 11 (452 mg, 0.672 mmol, 1.00 equiv) in dichloromethane (19 mL) at 0 °C was added t-butyldimethylsilyl trifluoromethanesulfonate (7.7 pL, 0.034 mmol, 0.050 equiv). After 25 min triethylamine (0.1 mL) was added. The reaction mixture was concentrated, and the residue was purified by silica gel chromatography (hexanes/ethyl acetate 4:1 to 3:2) to afford 12 (567 mg, 0.579 mmol, 86% yield) as a colorless oil. Rf= 0.58 (hexanes/ethyl acetate 2:1); 1H NMR (CDC 3 , 500 MHz) 6 7.37-7.23 (in, 15H), 5.47 (s, 1H), 5.45 (s, 1H). 5.36 (s, 1H), 4.89 (d, J= 1.5 Hz, 1H), 4.86 (d, J= 2.0 Hz, 1H), 4.63 (d, J= 11.0 Hz, 1H), 4.56 (d, J= 12.0 Hz, 1H, PhCH2-), 4.50 (d, J= 11.5 Hz, 1H, PhCH 2-),4.42 (d, J= 12.0 Hz, 1H, PhCH 2-), 4.39 (d, J= 11.5 Hz, 1H, PhCH 2-), 4.21 (d, J= 10.5 Hz, 1H, PhCH 2-), 4.18 (dd, J= 7.0, 5.5 Hz, 1H), 4.10 (d, J= 10.5 Hz, 1H, PhCH 2-), 4.07 (d, J= 10.5 Hz, 1H), 4.03 (d, J= 5.5 Hz, 1H), 3.90-3.82 (in, 3H), 3.76 (t, J= 9.0 Hz, 1H), 3.62 (dd, J= 10.0, 7.5 Hz, 1H), 3.30 (in, 1H), 3.24 (dd, J= 9.5, 8.0 Hz, 1H), 3.14 (dd, J= 12.0, 10.0 Hz, 1H), 2.04 (s, 3H), 1.97 (s, 3H), 3 1.49 (s, 3H), 1.34 (s, 3H), 1.26 (d, J= 6.5 Hz, 3H), 1.20-1.04 (in,21H, Si-i-Pr3); C NMR (125 MHz, CDCl3) 6 170.3, 169.4, 138.7, 138.3, 138.1, 128.7, 128.6, 128.4, 128.2, 128.09, 128.04, 127.99, 109.6, 106.7, 101.8, 91.8, 85.9, 82.1, 78.9, 78.4, 78.3, 78.1, 77.5, 76.91, 76.85, 74.5, 73.6, 73.5, 73.2, 69.7, 64.3, 64.0, 28.1, 26.8, 21.6, 20.8, 18.03, 17.97, 17.94, 12.2; FTIR (neat film) 2943, 2868, 1747, 1455, 1370, 1247, 1084, 883, 809 cm-1; HRMS (ESI) m/z: Calcd for C53 H 7 4 O1 Si(M+Na+) 1001.4695, found 1001.4730.
H Ph
BnO AcO 0Ac BnO BnO 00 BnOA OBn
MeMe0j MMe 01 \ O_ OBn O Me0 OBn
OTIPS OTIPS
[003001 O-Triisopropylsilyl {[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl
(1-+3)]-2,4-di-O-benzyl-p-D-xylopyranosyl-(1+-4)]}-2,3-di-0-isopropylidene-a-L rhamnopyranoside (S7). Potassium carbonate (221 mg, 1.60 mmol, 6.99 equiv) was added to a solution of trisaccharide 12 (224 mg, 0.229 mmol, 1.00 equiv) in methanol (10 mL) and water (1 mL). The reaction was stirred at 23 °C for 1 h. The reaction was diluted with saturated aqueous NH 4Cl solution (100 mL) and extracted with dichloromethane (3 x 100 mL). The combined organic phase were dried (Na 2SO 4) and concentrated in vacuo.
[00301] The residue was treated with u,-dimethoxytoluene (25 mL) andp toluenesulfonic acid monohydrate (22 mg, 0.11 mmol, 0.51 equiv) and stirred at 23 °C for 2 h. The reaction mixture was then diluted with dichloromethane (150 mL), and washed with saturated aqueous NaHCO 3 (100 mL) and water (100 mL). The organic phase was dried (Na2SO 4), filtered and concentrated in vacuo with heating to remove the excess a,a
dimethoxytoluene. The residue was purified by silica gel chromatography (hexanes/ethyl acetate 82:18) to give trisaccharide S7 (211 mg, 0.215 mmol, 94% yield over two steps). IH NMR (CDC 3, 400 MHz) 6 7.53-7.23 (in, 20H), 5.98 (s, 1H), 5.74 (s, 1H), 5.36 (s, 1H), 4.90 (d, J= 7.6 Hz, 1H), 4.84 (d, J= 11.0 Hz, 1H, PhCH 2-), 4.69 (d, J= 11.0 Hz, 1H, PhCH2-), 4.60 (d, J= 1.4 Hz, 2H), 4.53 (d, J= 11.6 Hz, 1H, PhCH2-), 4.52 (s,1H), 4.46 (d, J= 11.7 Hz, 1H, PhCH2 -), 4.19 (dd, J= 5.4, 1.7 Hz, 1H), 4.04 (dd, J= 5.6, 0.7 Hz,1H), 3.90-3.79 (in, 3H), 3.65 (s, 3H), 3.61 (dd, J= 7.3, 2.7 Hz, 1H), 3.27 (dd, J= 7.8, 1.4 Hz, 1H), 3.16 (dd, J= 10.1, 1.4 Hz,1H), 3 1.48 (s, 3H), 1.33 (s, 3H), 1.25 (d, J= 6.5 Hz, 3H), 1.20-1.02 (in,21H, Si-i-Pr3); C NMR (100 MHz, CDCl3) 6 138.34, 138.28, 138.20, 137.0, 129.9, 128.9, 128.7, 128.6, 128.54, 128.52, 128.04, 127.96, 127.90, 127.7, 127.4, 109.6, 107.5, 106.6, 101.8, 91.9, 87.3, 81.7, 78.4, 78.3, 78.1, 77.8, 76.8, 74.5, 73.8, 73.5, 73.2, 71.3, 64.3, 64.0, 28.1, 26.'8, 18.04, 18.01, 17.95, 12.2; FTIR (neat film) 3090, 3066, 3033, 2943, 2895, 2867, 1497, 1455, 1383, 1370, 1241, 1221,
1086, 1055, 1019, 993, 883, 856, 808, 752, 735, 697 cm- ; HRMS (ESI) m/z: Caled for C5 6H7 4 0 1 3Si(M+Na+) 1005.4796, found 1005.4838.
H Ph H Ph
BnO 000 I BnO I O/'-OBn O'- OBn MeMe 0 0 Me ~ HO Me n 0 O OBn S78
OTIPS OTIPS
[00302] O-Triisopropylsilyl {[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl
(1-+3)]-2,4-di-O-benzyl-p-D-xylopyranosyl-(1-4)]}-a-L-rhamnopyranoside (S8). To a solution of trisaccharide S7 (133 mg, 0.135 mmol, 1.00 equiv) in a mixture of methanol (2.0 mL) and water (6 drops) was added p-toluenesulfonic acid monohydrate (13 mg, 0.068 mmol, 0.51 equiv). The reaction was stirred at 23 °C for 5 d and was then directly purified by silica gel chromatography (hexanes/ethyl acetate 1:4 to 1:1) to afford S8 (90 mg, 0.095 mmol 71% yield) and starting material S7 (10 mg, 0.010 mmol, 7.5% recovered). 'H NMR (CDC 3, 500 MHz) 6 7.52-7.50 (in, 2H), 7.40-7.33 (in, 9H), 7.32-7.24 (in, 9H), 5.99 (s, 1H), 5.70 (s, 1H), 5.12 (s, 1H), 4.83 (d, J= 10.5 Hz, 1H, PhCH2-),4.78 (d, J= 10.5 Hz, 1H, PhCW-), 4.61 (d, 1 H, J= 2.0 Hz), 4.63 (d, J= 12.5 Hz, 1H, PhCW-), 4.59 (d, J= 12.5 Hz, 1H, PhC 2 -), 4.56-4.54 (in,2H), 4.54 (d, J= 11.5 Hz, 1H, PhCW-), 4.46 (d, J= 11.5 Hz,1H, PhCH 2 -), 3.99 (s, 2H), 3.90-3.78 (in, 5H), 3.67 (in, 2H), 3.46 (t, J= 9.0 Hz, 1 H), 3.40-3.33 (in, 2H), 3.14 (dd, J= 11.5, 10.5 Hz, 3 1H), 2.26 (d, J= 3.0 Hz, 1H), 1.27 (d, J= 6.5 Hz, 3H), 1.16-1.04 (in,21H, Si-i-Pr 3); C NMR (125 MHz, CDCl 3) 6 138.2, 138.1, 137.0, 136.9, 129.9, 128.95, 128.86, 128.7, 128.62, 128.55, 128.2, 128.1, 128.0, 127.7, 127.4, 107.6, 106.7, 104.7, 93.9, 91.8, 87.3, 83.5, 82.8, 78.6, 76.6, 76.1, 73.8, 73.5, 73.4, 72.9, 71.6, 71.0, 66.1, 64.4, 17.97, 17.89, 17.7, 12.1; FTIR (neat film) 3468 (br), 3066, 3033, 2943, 2867, 1455, 1386, 1093, 1053, 986, 882, 861, 734, 696 cm-1; HRMS (ESI) m/z: Calcd for C 3 H 70 O1 3 Si (M+Na+) 965.4483, found 965.4470.
H Ph H Ph
BnO 0 0 BnO O n
HO Me BnO Me~ BriO Me O n S8 OBS9
OTIPS OTIPS
[003031 O-Triisopropylsilyl 2-0-benzyl-{[5-0-benzyl-2,3-di-O-benzylidene-p-D apiofuranosyl-(1+-3)]-2,4-di-O-benzyl-p-D-xylopyranosyl-(1-+4)]}-a-L-rhamnopyranoside (S9). To a mixture of trisaccharide S8 (87 mg, 0.092 mmol, 1.0 equiv), dichloromethane (2.0 mL) and 20% aqueous NaOH (1.0 mL) was added n-Bu 4NBr (6 mg, 0.02 mmol, 0.2 equiv) and benzyl bromide (0.11 mL, 0.92 mmol, 10 equiv). After 20 h at 23 °C, the reaction mixture was concentrated and the resulting residue was purified by silica gel chromatography (hexane/ethyl acetate 78:22) to afford S9 (80 mg, 84% yield). 'H NMR (CDCl3 , 500 MHz) 6 7.52-7.50 (m, 2 H), 7.40-7.24 (m, 23H), 6.00 (s, 1H), 5.71 (s, 1H), 5.10 (s, 1H), 4.85 (d, J= 11.0 Hz, 1H, PhCH 2 ), 4.77 (d, J= 11.0 Hz, 1H, PhCH2-), 4.71 (d, J= 12.0 Hz,1H, PhCH 2-), 4.70 (d, J= 8.0 Hz, 1H), 4.66 (d, J= 12.0 Hz, 1H, PhCH2-), 4.63 (d, J= 12.5 Hz, 1H, PhCH 2-), 4.60 (d, J= 12.5 Hz, 1H, PhCH 2-),4.54 (d, J= 12.0 Hz, 1H, PhCH 2-),4.53 (s, 1H), 4.46 (d, J= 12.0 Hz,1H, PhCH 2 -), 4.01-3.95 (m, 3H), 3.87-3.78 (m, 3H), 3.66 (s, 2H), 3.63 (dd, J= 3.0, 1.5 Hz, 1H), 3.57 (t, J= 9.0 Hz, 1H), 3.38 (m, 1H), 3.28 (dd, J= 9.5, 8.0 Hz, 1H), 3.16 (t, J= 11.5 Hz, 1H), 2.95 (d, J= 6.5 Hz, 1H), 1.28 (d, J= 6.0 Hz, 3H), 1.08-0.97 (m, 21H, Si-i-Pr 3); 3 C NMR (125 MHz, CDC 3
6 138.2,138.1, 138.0,137.2,136.8,129.7,128.8,128.51, 128.45,128.43,128.3,128.06,128.04, ) 127.85, 127.82, 127.75, 127.5, 127.2, 107.4, 106.5, 104.1, 92.3, 91.6, 87.1, 82.2, 82.1, 79.4, 78.1, 76.5, 75.2, 73.6, 73.24, 73.17, 73.0, 71.6, 71.0, 66.4, 64.0, 17.76, 17.74, 17.69, 11.9; FTIR (neat film) 3477 (br), 3068, 3033, 2943, 1465 cm-I; HRMS (ESI) m/z: Calcd for C 60H260 3 Si (M+Na+) 1055.4953, found 1055.5006.
H Ph
BnO0 00 H Ph
0 OBn BnO fl
O O~nn BnO Me On 9 BnO Me OBn OTIPS C1 3C O OBn O~n IBz~1~ OTIPS O n Bz-L HN HBzO ~ OBn OBn 3 OBn 13
[00304] O-Triisopropylsilyl [2-0-benzoyl-3,4,6-tri-O-benzyl-p-D-glucopyranosyl
(1-+3)]-2-0-benzyl-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1-3)]-2,4-di-0 benzyl-p-D-xylopyranosyl-(1-4)]}-a-L-rhamnopyranoside (13). To a solution of trisaccharide S9 (88 mg, 0.085 mmol, 1.0 equiv) and glucosyl imidate 3 (131 mg, 0.187 mmol, 2.20 equiv) in diethyl ether (5.0 mL) at -45 °C was added a solution of trimethylsilyl
trifluoromethanesulphonate (2.3 pL, 0.013 mmol, 0.15 equiv) in dichloromethane (115 pL).
After 30 min at this temperature, triethylamine (0.15 mL) was added to the reaction mixture, which was concentrated and purified by silica gel chromatography (benzene/ethyl acetate 19:1)
to afford 13 (115 mg, 0.0733 mmol, 86% yield). 'H NMR (500 MHz, CDC 3) 6 8.18 (d, J= 7.5 Hz, 2H), 7.64-7.14 (in, 43H), 6.06 (s, 1H), 5.91 (s, 1H), 5.34 (dd, J= 9.5, 8.0 Hz, 1H), 4.98-4.92 (in, 3H), 4.86-4.81 (in, 2H), 4.79 (s, 1H), 4.77 (d, J= 11.0 Hz, 1H, PhCH 2-), 4.75 (d, J= 12.0 Hz, 1H, PhCH 2 -),4.70-4.58 (in, 6H), 4.47 (d, J= 8.0 Hz, 1H), 4.42 (d, J= 11.5 Hz,1H, PhCH 2 ), 4.37 (d, J= 11.5 Hz, 1H, PhCH2-), 4.32 (d, J= 11.5 Hz, 1H), 4.20 (dd, J= 9.0, 3.0 Hz, 1H), 4.15 (d, J= 10.5 Hz, 1H, PhCH2-), 4.13 (d, J= 10.5 Hz,1H, PhCH 2-),3.88-3.70 (in,7H), 3.66 (dd, J= 11.5, 2.5 Hz, 1H), 3.59-3.53 (in, 2H), 3.44 (d, J= 10.0 Hz,1H), 3.29-3.23 (in, 1H), 3.20 (dd, J= 9.0, 8.0 Hz, 1H), 2.32 (in, 1H), 2.05 (t, J= 11.0 Hz, 1H), 1.28 (d, J= 6.0 Hz, 3H), 1.10 0.90 (in, 21H, Si-i-Pr3); 'C NMR (125 MHz, CDCl 3) 6 165.4, 139.2, 139.1, 138.71, 138.66, 138.64, 138.2, 138.1, 136.9, 133.5, 130.2, 130.1, 129.9, 129.4,128.94,128.85, 128.7, 128.60, 128.59, 128.57, 128.55, 128.45, 128.42, 128.1, 128.0, 127.95, 127.93, 127.8, 127.7, 127.6, 127.54, 127.50, 127.4, 107.4, 106.6, 102.7, 100.9, 94.0, 91.9, 87.4, 83.3, 81.8, 79.0, 78.3, 78.0, 77.5, 76.7, 75.3, 74.9, 74.67, 74.64, 74.5, 73.89, 73.87, 73.84, 73.57, 72.8, 71.4, 70.0, 67.3, 63.0, 18.10, 18.04, 18.02, 12.1; FTIR (neat film) 3030, 2938, 2862, 1734, 1452, 1264 cm-1; HRMS (ESI) m/z: Calcd for C94 H1 08 O19 Si (M+Na+) 1569.7332, found 1569.7397.
H Ph H Ph
BnO 0 BnO0 00
BOMe OBn Br O Bn 0 0Bn 0 0 Bn T O OBn13 F HO OBn S10 0Bn OTIPS 0Bn
[003051 O-Triisopropylsilyl 2-0-benzyl-[3,4,6-tri-O-benzyl-p-D-glucopyranosyl
(1+3)]-{[5-0-benzyl-2,3-di-0-benzylidene-p-D-apiofuranosyl-(1+-3)]-2,4-di-O-benzyl-p-D xylopyranosyl-(1-4)]}-a-L-rhamnopyranoside (S10). To a solution of tetrasaccharide 13 (110 mg, 0.0701 mmol, 1.00 equiv) in dichloromethane (15 mL) at -78 °C was added diisobutylaluminium hydride solution (1.0 M in hexane, 0.14 mL, 0.14 mmol, 2.0 equiv). After 0.5 h, additional diisobutylaluminium hydride solution (1.0 M in hexane, 0.20 mL, 0.20 mmol, 2.9 equiv) was added, and 0.5 h later, the reaction was quenched with methanol at -78 °C. The
reaction mixture was concentrated, and the residue was purified by silica gel chromatography
(hexanes/ethyl acetate 4:1) to afford S10 (95 mg, 0.065 mmol, 92% yield). 1 HNMR(500MHz, CDC 3 ) 6 7.50-7.42 (in, 2H), 7.46-7.14 (in, 38H), 6.02 (s, 1H), 5.86 (s, 1H), 5.06 (d, J= 8.0 Hz, 1H), 4.97-4.92 (in, 2H), 4.88-4.80 (in, 4H), 4.72 (d, J= 11.0 Hz, 1H), 4.68-4.60 (in, 4H), 4.59 4.48 (in, 4H), 4.38 (d, J= 12.0 Hz, 1H), 4.06-3.82 (in, 9H), 3.70 (s, 4H), 3.62 (dd, J= 11.0, 4.0 Hz, 1H), 3.54-3.40 (in, 4H), 3.36-3.26 (in, 2H), 3.22 (d, J= 7.5 Hz, 1H), 2.76 (in, 2H), 1.34 (d, J = 6.0 Hz, 3H), 1.10-0.90 (in, 21H, Si-i-Pr3); 1C NMR (125 MHz, CDCl 3) 6 139.3,139.0, 138.48, 138.45, 138.2, 137.4, 136.8, 129.8, 129.4, 129.1, 128.9, 128.71, 128.66, 128.59, 128.56, 128.48, 128.44, 128.37, 128.05, 127.99, 127.7, 127.59, 127.57, 127.4, 107.8, 106.8, 105.0, 103.1, 93.7, 91.9, 87.5, 85.1, 83.1, 82.8, 79.5, 78.2, 77.4, 77.2, 77.1, 76.1, 75.9, 75.1, 74.7, 74.5, 73.9, 73.7, 73.6, 73.2, 71.3, 69.3, 67.2, 64.2, 18.2, 18.00, 17.97, 12.1; FTIR (neat film) 3436 (br), 3059, 3032, 2930, 2863, 1497, 1455, 1362, 1094, 883 cm- 1; HRMS (ESI) m/z: Calcd for C87 H 104 01Si (M+NH 4+) 1482.7336, found 1482.7333.
HPh HPh
BnO O O BnO 0 00
S OBnOBn
BnO Me BnO Me
O HO OBn 0 On OnBn OTIPS OTIPS t3 Si \ Sill TISOBn OBn
[003061 O-Triisopropylsilyl 2-0-benzyl-[3,4,6-tri-O-benzyl-2-0-triisopropylsilyl-p-D glucopyranosyl-(1-3)]-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1-+3)]-2,4-di O-benzyl-p-D-xylopyranosyl-(1-+4)]}-a-L-rhamnopyranoside (S11). To a solution of tetrasaccharide S10 (90 mg, 0.061 mmol, 1.0 equiv) in dichloromethane (10 mL) at 0 °C was added 2,6-lutidine (0.21 mL, 1.8 mmol, 26 equiv) and triethylsilyl trifluoromethanesulfonate (0.21 mL, 0.92 mmol, 15 equiv). The reaction mixture was stirred at this temperature for 30 min and at 23 °C for 8 h. The reaction mixture was concentrated, and the residue was purified by silica gel chromatography (hexanes/ethyl acetate 23:2) to afford S11 (96 mg, 0.061 mmol, 99% yield). 1H NMR (500 MHz, CDCl3) 6 7.50-7.44 (in, 2H), 7.38-7.02 (in, 38H), 5.96 (s, 1H), 5.89 (s, 1H), 5.03 (d, J= 8.0 Hz, 1H), 4.95 (d, J= 11.5 Hz, 1H, PhCH 2-),4.89-4.82 (in, 3H), 4.80 (d, J= 12.5 Hz, 1H, PhCH2-), 4.75 (d, J= 11.1 Hz, 1H, PhCH 2-), 4.71 (d, J= 11.2 Hz, 1H, PhCH 2 -), 4.64 (d, J= 7.5 Hz, 1H), 4.63-4.48 (in, 7H), 4.46 (d, J= 11.3 Hz, PhCH 2-, 1H), 4.39 (d, J= 12.5 Hz, 1H, PhCH 2 -), 4.20 (dd, 2 H, 1H, J= 9.0, 3.5 Hz), 4.01 (t, J= 9.5 Hz, 1H), 3.98-3.78 (in, 5H), 3.65-3.54 (in, 4H), 3.50-3.38 (in, 3H), 3.36-3.24 (in, 3H), 3.22 (dd, J= 9.5, 8.0 Hz, 1H), 2.11 (d, 3 J= 9.5 Hz, 1H), 1.31 (d, J= 6.0 Hz, 3H), 1.06-0.89 (in,29H), 0.72 (in,6H), 0.56 (in,1H); C
NMR (125 MHz, CDC13) 6 139.4,139.3, 139.0, 138.8, 138.3, 138.2, 137.0, 129.8, 128.9, 128.7, 128.6, 128.50, 128.45, 128.43, 128.4, 128.3, 128.2, 127.93, 127.90, 127.8, 127.74, 127.70, 127.66, 127.6, 127.5, 127.3, 127.2, 107.5, 106.7, 102.7, 102.1, 93.7, 91.9, 87.4, 85.0, 82.9, 79.3, 78.2, 77.5, 77.35, 77.32, 76.1, 75.7, 75.2, 74.6, 74.5, 74.0, 73.80, 73.78, 73.4, 73.0, 71.3, 69.0, 66.9, 64.1, 18.1, 18.0, 12.1, 7.5, 6.9, 6.1, 5.8; FTIR (neat film) 3065, 3032, 2943, 2871, 1497, 1455, 1364, 1178, 1148, 1094, 1028, 884, 735, 697 cm- ;HRMS (ESI) m/z: Calcd for C93H11sOisSi 2 (M+Na+) 1601.7754, found 1601.7816.
H Ph H Ph
Bno0 000 Bn0 000
BntO OBn BnO O OBn 0 0
BnO Me nBnO Me O OBn S11 O 0 OBn S12
OBn OBn
[003071 2-0-benzyl-[3,4,6-tri-O-benzyl-2-0-triisopropylsilyl-p-D-glucopyranosyl
(1-+3)]-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1+-3)]-2,4-di-O-benzyl-p-D xylopyranosyl-(1-4)]}-L-rhamnopyranose (S12). To a solution of tetrasaccharide S11 (96 mg, 0.061 mmol, 1.0 equiv) in tetrahydrofuran (6 mL) at 0 °C was added tetrabutylammonium fluoride solution (1.0 M in tetrahydrofuran, 63 pL, 0.063 mmol, 1.0 equiv). After 3 min, silica gel (120 mg) was added to the reaction mixture, which was concentrated and purified by silica gel chromatography (hexanes/ethyl acetate 11:9) to afford hemiacetal S12 (88 mg, quantitative yield). 1H NMR (500 MHz, CDCl3) 6 7.49-7.45 (in, 2H), 7.36-7.09 (in, 38H), 5.94 (s, 1H), 5.80 (s, 1H), 5.01 (dd, J= 3.0,2.8 Hz,1H), 4.98-4.90 (in,2H), 4.88-4.76 (in, 3H), 4.76-4.70 (in,2H), 4.68-4.60 (in, 2H), 4.60-4.53 (in, 2H), 4.53-4.44 (in, 6H), 4.22 (dd, J= 8.5, 3.5 Hz, 1H), 4.00 3.76 (in, 7H), 3.74 (dd, J= 3.0, 2.0 Hz, 1 H), 3.64-3.56 (in,2H), 3.54-3.20 (in, 9 H), 2.68 (in, 1H), 2.37 (d, J= 3.5 Hz, 1H), 1.32 (d, J= 6.5 Hz, 3H), 0.98 (in,9H), 0.68-0.52 (in,6H);C NMR (125 MHz, CDCl 3) 6 139.3, 138.9, 138.8, 138.7, 138.1, 137.4, 137.0,128.8, 128.6, 128.54, 128.50, 128.45, 128.43, 128.40, 128.37, 128.3, 128.2, 127.9, 127.8, 127.71, 127.68, 127.64, 127.60, 127.57, 127.54, 127.4, 127.35, 127.30, 127.2, 107.4, 106.6, 102.0, 91.80, 91.78, 87.3, 82.4, 78.7, 78.4, 76.5, 75.9, 75.6, 74.9, 74.8, 74.6, 73.7, 73.5, 73.4, 72.9, 71.3, 69.1, 67.4, 18.2, 18.1, 17.9, 13.1, 12.5, 7.4, 5.7, 5.6; FTIR (neat film) 3401 (br), 3032, 2938, 2874, 1454, 1364, 1095, 1066, 734, 696 cm-1; HRMS (ESI) m/z: Calcd for Cs 4 H 9801sSi (M+Na+) 1445.6420, found 1445.6449.
H Ph H Ph
BnO0 00 BnO0 0
O4t OBn O OBn
BnO Me BnO Me O Bn OBn ~ S12 01C, -O ~ 0Bl OBn 14 OH Bn 0Bn
NH
[003081 O-Trichloroacetimidoyl 2-0-benzyl-[3,4,6-tri-O-benzyl-2-0-triisopropylsilyl p-D-glucopyranosyl-(1-+3)]-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1-+3)] 2,4-di-O-benzyl-p-D-xylopyranosyl-(1-4)]}-a-L-rhamnopyranoside (14). To a solution of hemiacetal S12 (64 mg, 0.045 mmol, 1.0 equiv) in dichloromethane (10 mL) at 0 °C was added trichloroacetonitrile (0.9 mL, 0.9 mmol, 200 equiv) and 1,8-diazabicyclo[5.4.0]undec-7-ene (62 ptL, 0.045 mmol, 10 equiv). After 3 h at 0 °C, triethylamine (100 pL) was added. The reaction mixture was concentrated, and the residue was purified by silica gel chromatography (hexanes/ethyl acetate 7:3) to afford 14 (65 mg, 92% yield). 'H NMR (500 MHz, CDCl 3 ) 6 8.52 (s, 1H), 7.53-7.49 (in, 2H), 7.41-7.09 (in, 38H), 6.17 (d, J= 2.0 Hz, 1H), 6.00 (s, 1H), 5.90 (s, 1H), 5.04 (d, J= 7.8 Hz, 1H), 4.97 (d, J= 11.8 Hz,1H, PhCH 2-), 4.89 (d, J= 11.8 Hz, 1H, PhCH 2-), 4.85 (d, J= 12.2 Hz, 1H, PhCH 2-), 4.84 (d, J= 11.1 Hz, 1H, PhCH 2-), 4.78 (d, J= 11.1 Hz, 1H, PhCH 2 -), 4.74 (d, J= 11.3 Hz, 1H, PhCH 2-), 4.71 (d, J= 11.3 Hz, 1H, PhCH 2-), 4.65 4.45 (in, 9H), 4.39 (d, J= 12.4 Hz, 1H, PhCH2-),4.05-3.87 (in, 6H), 3.67 (d, J= 10.5 Hz, 1H, PhCH 2-),3.64 (d, J= 10.5 Hz, 1H, PhCH2-),3.57 (t, J= 9.4 Hz,1H), 3.50-3.40 (in, 3H), 3.40 3.22 (in, 4H), 2.20 (d, J= 9.3 Hz, 1H), 1.41 (d, J= 6.2 Hz, 3H), 1.00-0.92 (in,9H), 0.80-0.68 (in, 6 H); "C NMR (125 MHz, CDC3) 6 160.1, 139.1, 138.9,138.5,138.35,138.30,138.0,137.9, 136.8, 129.6, 128.7, 128.4, 128.3, 128.24, 128.23, 128.13, 128.09, 128.0, 127.8, 127.75, 127.71, 127.6, 127.50, 127.48, 127.46, 127.34, 127.32, 127.29, 127.2, 127.1, 127.0, 107.3, 106.4, 102.4, 101.7, 96.4, 91.7, 91.4, 87.2, 84.8, 82.6, 78.0, 77.0, 76.9, 76.5, 76.1, 75.6, 75.4, 75.0, 74.31, 74.26, 73.6, 73.49, 73.46, 73.2, 72.8, 71.1, 70.1, 68.5, 18.0, 7.2, 5.5; FTIR (neat film) 3335, 1 3063,3030,2935,2876,1673,1454,1363,1176,1149,1095,1063,1028,796,734,697cm- .
H Ph
BnO0 0 0 H Ph O Bn
TIPSO Me BnO 0 0
OOc O Bn BnO Me O On 0 0 n 0OAc00 0 BnO-74 BnO Me On Me OBn M OO OBn O Me C1 3C 0 Et 3S IOX 10 cc14 BnO 15
Me e
[003091 O-Triisopropylsilyl (2-0-benzyl-[3,4,6-tri-O-benzyl-2-0-triisopropylsilyl-p-D glucopyranosyl-(1-3)]-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1-+3)]-2,4-di O-benzyl-p-D-xylopyranosyl-(1-+4)]}-a-L-rhamnopyranoside-[1-+2])-4-0-acetyl-[4-0 benzyl-2,3-di-0-isopropylidene-a-L-rhamnopyranose-(1-3)]-p-D-fucopyranoside (15). Dichloromethane (1.5 mL) was added to disaccharide 10 (18 mg, 0.028 mmol, 2.8 equiv), imidate 14 (16 mg, 0.010 mmol, 1.0 equiv), and 4 A molecular sieves (40 mg), and the resulting mixture was stirred for 30 min at 23 °C and was then cooled to -15 °C. A solution of trimethylsilyl trifluoromethanesulphonate (0.145 pL, 0.000799 mmol, 0.0783 equiv) in dichloromethane (20 pL) was added. After 40 min triethylamine (60 pL) was added, and the reaction mixture was filtered, concentrated, and purified by silica gel chromatography (benzene/ethyl acetate 97:3) to afford 15 (13 mg, 62% yield). 'H NMR (500 MHz, CDC 3 ) 6 7.46-7.42 (in, 2H), 7.37-7.07 (in, 43H), 5.90 (s, 1H), 5.72 (s, 1H), 5.26 (d, J= 2.0 Hz, 1H), 5.09 (s, 1H), 4.92-4.76 (in, 5H), 4.71 (d, J= 11.5 Hz, 1H, PhCH 2-),4.65 (d, J= 12.0 Hz, 1H, PhCH 2-), 4.62-4.36 (in, 11H), 4.18 (in, 1H), 4.08 (in, 2H), 3.96-3.82 (in, 5H), 3.73 (in, 1H), 3.67 (dd, J= 10.0, 6.5 Hz, 1H), 3.64-3.48 (in, 5H), 3.42-3.34 (in,2H), 3.34-3.26 (in, 3H), 3.24-3.16 (in, 2H), 3.12 (dd, J= 9.5, 7.0 Hz, 1H), 2.11 (s, 3H), 1.34-1.24 (in,9H), 1.18-1.02 (in,21H), 0.84-0.74 (in, 9H), 0.64-0.54 (in, 6H); 3C NMR (125 MHz, CDCl 3) 6 171.0,139.2,138.7, 138.2, 136.9, 129.8, 129.4, 128.8, 128.65, 128.55, 128.43, 128.38, 128.2, 128.04, 128.00, 127.84, 127.78, 127.75, 127.66, 127.61, 127.4, 127.3, 127.1, 109.3, 107.3, 106.4, 97.0, 91.7, 87.2, 80.4, 79.0, 78.7, 78.5, 77.1, 76.8, 76.4, 75.56, 75.4, 74.6, 74.0, 73.7, 73.4, 73.0, 72.8, 71.3, 65.7, 63.9, 41.6, 29.9, 28.0, 26.2, 21.1, 18.8, 18.4, 18.3, 17.8, 16.5, 12.87, 7.3, 5.5; FTIR (neat film) 2930,
2868, 1744, 1068 cm-1; LRMS (MALDI) m/z: Caled for C 7 H1 50 0 27 Si2 (M+Na) 2065.98, found 2066.60.
H Ph H Ph
BnO 0 0 000 BnO 000 O OBn O OBn
BnO Me BnO Me 00 OBn HN 0 0 OBn OBn 0 E0 I EtS-- 0CI 3Ct 0E 3 SI 0- TIPSO 0 Me OBn OBn 0 0 0 Me 0Ac Me 0 O~ 0 Ac BnO 15 Me 0 16 0' Y0 Bn0-7
Me Y0 Me
[003101 O-Trichloroacetimidoyl (2-0-benzyl-[3,4,6-tri-O-benzyl-2-0-triisopropylsilyl p-D-glucopyranosyl-(1-+3)]-{[5-0-benzyl-2,3-di-O-benzylidene-p-D-apiofuranosyl-(1-+3)] 2,4-di-O-benzyl-p-D-xylopyranosyl-(1-4)}-a-L-rhamnopyranoside-[1+-2])-4-0-acetyl-[4 O-benzyl-2,3-di-0-isopropylidene-a-L-rhamnopyranose-(1-3)]- a-D-fucopyranoside 17. To a solution of 15 (10.0 mg, 0.00489 mmol, 1.00 equiv) in tetrahydrofuran (1.50 mL) at 0 °C was added tetrabutylammonium fluoride solution (0.0245 M in tetrahydrofuran, 0.20 mL, 0.0049 mmol, 1.0 equiv). After 50 min, the solvent was removed in vacuo at 0 °C to give a pale yellow oil that was immediately subjected to further reaction. Rf = 0.42 (benzene/ethyl acetate 9:1). The hemiacetal residue was dried by azeotropic removal of water with toluene (3 x 1 mL) and was then dissolved in dichloromethane (4.0 mL) and cooled to 0 °C. Trichloroacetonitrile (74 ptL, 0.74 mmol, 150 equiv) and 1,8-diazabicyclo[5.4.0]undec-7-ene (2.7 pL, 0.020 mmol, 4.0 equiv) were added, and the solution was stirred at 0 °C for 13.5 h and 23 °C for 2 h. The solution was then concentrated and purified by silica gel chromatography (benzene/ethyl acetate 99:1 to 9:1) to afford 16 (8.3 mg, 0.0041 mmol, 84% yield). Rf= 0.53 (benzene/ethyl acetate 9:1);1 H NMR (500MHz, CDC 3) 6 8.54 (s, 1H, C=NH), 7.49-6.95 (in, 45H), 6.41 (d, J= 3.5 Hz, 1H), 5.90 (s, 1H), 5.68 (s, 1H), 5.28-5.20 (in, 2H), 5.04 (d, J= 11.9 Hz, 1H), 4.92 (d, J= 11.9 Hz, 1H), 4.87-4.64 (in, 3H), 4.84 (d, J= 11.7 Hz, 1H), 4.83 (d, J= 11.7 Hz, 1H), 4.68 (d, J= 10.9 Hz, 1H), 4.64-4.39 (in, 11H), 4.32 (s, 1H), 4.28-4.19 (in, 3H), 4.19-4.08 (in, 3H), 3.91-3.78 (in, 4H), 3.78-3.61 (in, 3H), 3.57-3.33 (in, 6H), 3.30 (in, 1H), 3.23-3.09 (in, 3H), 2.16 (s, 3H,
C(O)CH 3 ), 1.34 (s, 3H), 1.32-1.23 (in, 1OH), 1.14 (d, J= 6.5 Hz, 3H), 1.12 (s, 3H), 0.85 (t, J 7.8 Hz, 9H), 0.66-0.56 (in, 6H); FTIR (neat film) 2932, 2875, 1746, 1673, 1497, 1454, 1367, 1229, 1098, 1072, 990, 735, 698 cm-I; LRMS (MALDI) m/z: Caled for C 11 oH 13 oCl 3NO 2NCl 7 3 SiNa (M+Na) 2055.64, found 2055.73.
FINAL ASSEMBLY OF SYNTHETIC QS-7-API H Ph
BnO 000
0 OH O OBn Me Me H Bnn C o Me , H HNBnO me RflO n En tSiOl: Bn 0~4~$I CH H Me 0 "Me HN 0 0 0O ?X~~ ~ O~n H0P BnO OBn H H 3Si Me C1 3C 0 Et3siO OBn H Ph BnO SiEt3 O Me OBn 0 RnO 000
BnO 18 OAc O OBn
BnO 16 RnO Me 0O 0 O~n On Me Et3 S OBn
B OSO On Me H 0 0 Me Me 0 Bn0 2C Me H OAc RnO 0-EtSiO X 0 &_ O4~T Me 0 BnO O n t H H3 Me 0 Rn~OSi~t Et 3 I M e Me BnO S13
[00311] Fully-protected synthetic QS-7-Api (S13). A solution of boron trifluoride diethyl etherate (0.40 pL, 0.0032 mmol, 1.0 equiv) in dichloromethane (20 pL) was injected to a solution of the imidate 16 (6.4 mg, 0.0031 mmol, 1.0 equiv), 18 (9.1 mg, 0.0047 mmol, 1.5 equiv) and 4A molecular sieves (20 mg) in dichloromethane (2.0 mL) at -78 °C. The reaction temperature was allowed to warm to 23 °C slowly, and triethylamine (20 pL) was added after 16.5 h. The reaction was concentrated and purified by silica gel chromatography (hexanes/ethyl acetate 4:1) to afford S13 (8.5 mg, 0.0022 mmol, 71% yield) and starting material 18 (3.0 mg, 0.0016 mmol, 33% recovered). Rf= 0.67 (benzene/ethyl acetate 7:3); characteristic resonances from IH NMR (500 MHz, CDC 3) 6 9.41 (s, 1H, -CHO), 5.94 (s, 1H), 5.83 (s, 1H), 5.30 (d, J 7.3 Hz, 1H), 5.23 (in, 1H), 5.23 (d, J= 12.4 Hz, 1H), 5.13 (d, J= 12.4 Hz, 1H), 5.08 (s,1H),
5.01 (in, 1H), 4.31 (t, J= 6.6 Hz, 1H), 4.22 (in, 1H), 4.17 (d, J= 7.1 Hz, 1H), 4.12 (q, J= 7.1 Hz, 1H), 2.96 (in, 1H), 2.83 (in, 1H), 2.72 (in, 1H), 2.50 (in, 1H), 2.09 (s, 3H, -C(O)CH 3 ),1.39 (s, 3H, Me), 1.30 (s, 3H, Me), 1.12 (s, 3H, Me); see proton NMR below; MS (MALDI) m/z: Caled for C222H 2 8404Si 4 Na (M+Na) 3821 (±2), found 3820 (±2).
H Ph
BnO 000
O OBn
S13 BnO Me OBn
0E 0 OBn OBn HO H H
BMOeS Me 0 Ot H MeBnO OAc OH BnO H H HHOMe0MeBnO Me HOM 0 H H t 3 Si Me A004L 0O H BnOH QS-7-Ap __ H-- O MM
( V SEt 3 BnO Me~ 0 0 O:0 Me O Me M HO 2C Me H0M Me _0 IIM HO- ' OH1_- OH t Me HO "MHO7 0 0 CH M He OH0 HO
HO/
[00312] Synthetic QS-7-Api (1). Two solutions of fully-protected QS-7-Api S13 (1.3 mg, 0.00034 mmol, 1.0 equiv) in dichloromethane (0.20 mL) were each transferred to a 10-mL round bottom flask and cooled to 0 °C. A pre-cooled (0 C) solution of trifluoroacetic acid (1.0 mL, TFA/water 4:1) was added to each flask. After vigorous stirring for 60 min, the reaction mixtures were concentrated in vacuo for 140 min at 0 °C to give a white solid residue. To both flasks were added tetrahydrofuran (1.0 mL), ethanol (2.0 mL), and 10% (dry basis) palladium on carbon, wet, Degussa type El01 NE/W (2.0 mg, 0.00094 mmol, 2.8 equiv). The two runs were stirred under hydrogen pressure (50 psi) for 44 h, and then the suspensions were combined and filtered through a 0.45 pm polyvinylidene fluoride filter disk, which was then washed with methanol (5 mL). The filtrate and rinsing were concentrated and purified by RP HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 32+37% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The fraction containing the major peak (tR = 14.85 min) was collected andlyophilized to dryness to afford synthetic QS-7-Api (1) (0.9 mg, 0.0005 mmol, 70% yield) as a white solid. H NMR (500 MHz, 7:3 D 2 0:CD3CN) 6 9.36 (s, 1H, -CHO), 5.39 (d, J= 8.0 Hz, 1H), 5.34 (in,
1H, R 2C=CHR), 5.22 (d, J= 3.1 Hz, 1H), 5.12 (d, J= 2.9 Hz, 1H), 5.03 (s, 1H), 4.86 (s, 1H), 4.67 (d, J= 7.7 Hz, 1H), 4.63 (d, J= 7.8 Hz, 1H), 4.55 (d, J= 7.7 Hz, 1H), 4.50 (d, J= 7.7 Hz, 1H), 4.33 (in, 1H), 4.05 (d, J= 10.1 Hz, 1H), 4.02 (in,1H), 3.99-3.94 (in, 2H), 3.92-3.57 (in, 22H), 3.55-3.45 (in, 7H), 4.33 (in, 1H), 3.42-3.15 (in, 12H), 2.86 (dd, J= 14.5, 3.6 Hz, 1H), 2.14 (s, 3H, -C(O)CH 3 ),1.89-1.30 (in, 14H), 1.28 (s, 3H, Me), 1.22 (d, J= 6.2 Hz, 3H, Me), 1.15 (d, J = 6.1 Hz, 3H, Me), 1.08 (s, 3H, Me), 1.05 (in, 1H), 1.02 (in, 1H), 0.99 (d, J= 6.3 Hz, 3H, Me), 0.93 (s, 3H, Me), 0.89 (s, 3H, Me), 0.84 (s, 3H, Me), 0.71 (s, 3H, Me).
[00313] Natural QS-7-Api (1). Brenntag Quil-A (205 mg, batch L77-244) was fractionated by RP-HPLC on an XBridge Prep C18 OBD column (5 pm, 19 x 150 mm) using a linear gradient of 30-40% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 15 mLmin. Crude natural QS-7-Api (1) (tR = 15.25 min) was collected and further purified on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 32-37% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The fraction containing QS-7-Api (1) (tR = 14.85 min) was collected and lyophilized to dryness to afford natural QS-7-Api (1) (2.0 mg) as a white solid (~70% pure by IH NMR).
Preparation of the Semisynthetic Triterpene-Trisaccharide
O OH
/0 eMe Me H HO QuilHA T TO E CHO H OM Me Me0M So NOTES 0 ICHH TESO S OTES S14 TESON OTES TESO I Quil TESO O X- TESAO
+ O OH 0Me Me H HEO ~~ Me H TESO--4 H Me 0'M a NOTES 0 H H TES N Me TESO? TESO 0fOTES S16 TESOe OTES
[003141 m -(16-o-triethylsilyl-quillaic acid) 4-a-triethylsilyl-[(2,3,4-tri--triethylsilyl c-D-Xylopyranosyl)-(-3)-[(2,3,4,6-tetra--triethylsilyl-p-D-galactopyranosyl-(-2)--D glucuronoside( 14) and -(16-triethylsilyl-quillaicacid) 4--triethylsilyl-[(2,3,4-tri- triethylSilyl-cx-L-rhamnopyranosyl)-(1-KI)1-[(2,3,4,6-tetra-O-triethylsilyl-3-D galactopyranosy-(-e2)o-m3-D-gLUcuronoside (16). mixture of Brenntag Quil A(1.15 g, batch L77-244) and potassium hydroxide (0.97 g)in ethanol (25 mL) and water (25 mE)was heated at 80'C for 7.25 h, then cooled to 0'C and neutralized with1IN aqueous NaGH. The reaction mixture was concentrated to one-half volume and purified by silica gel chromatography (chloroform/methanol/water/acetic acid 15:9:2: 1). The major product spot by TLC was isolated, concentrated, and dried by azeotropic removal of solvents with toluene (2 x20 mL) and lyophilization from water (4 x30 mE)to afford amixture of prosapogenins as alight tan foam (0.576 g). Rf= 0.44 (chloroform/methanol/water/acetic acid 15:9:2:1); characteristic resonances from IH NMR: (500 MHz, CD 30D) 6 9.44 (s, 1H, -CHO), 5.33 (in, 1H, R2C=CHR), 4.80 (d, J= 7.4 Hz, 1H), 4.63 (d, J= 7.7 Hz, 1H), 4.43 (s, 1H), 4.37 (d, J= 6.9 Hz, 1H); IH NMR (500 MHz, 7:3 D 20:CD 3CN) 6 9.36 (s, 1H, -CHO), 5.29 (in, 1H, R 2C=CHR), 4.68 (d, J= 7.7 Hz, 1H), 4.59 (d, J= 8.2 Hz, 1H).
[003151 Pyridine (8 mL) was added to the prosapogenin (0.560 g), and the suspension was concentrated. Additional pyridine (8.6 mL) was added, followed by triethylsilyl trifluoromethanesulfonate (1.98 mL, 8.76 mmol). Further triethylsilyl trifluoromethanesulfonate was added to the reaction after 66 h (0.33 mL, 1.5 mmol), 89 h (66 pL, 0.29 mmol), and 112 h
(0.13 mL, 0.54 mmol). After 5 d, the reaction mixture was concentrated and passed through a plug of silica gel (hexane/ethyl acetate 4:1 to 7:3) to give a light yellow oil that was then dissolved in methanol (10 mL) and tetrahydrofuran (10 mL). The solution was stirred for 3.5 d, and then it was concentrated and purified by silica gel chromatography (hexane/ethyl acetate 4:1 to 7:3) to afford diacid S14 (0.257 g) and diacid S16 (0.095 g) as white solids.
[003161 S14 Rf= 0.39 (benzene/ethyl acetate 4:1); 1H NMR (500 MHz, CDCl 3) 6 9.63 (s, 1H, -CHO), 5.33 (in, 1H, R 2C=CHR), 4.54 (in, 1H), 4.50 (d, J= 7.3 Hz, 1H), 4.44 (d, J= 5.9 Hz, 1H), 4.39 (d, J= 7.4 Hz, 1H), 3.95-3.87 (in, 4 H), 3.83-3.78 (in, 2H), 3.74 (t, J= 9.0 Hz, 1H), 3.65-3.58 (in, 3H), 3.48 (in, 1H), 3.43-3.31 (in, 3H), 3.25 (t, J= 7.9 Hz, 1H), 3.12 (t, J= 10.8 Hz, 1H), 2.95 (dd, J= 13.9, 3.7 Hz, 1H), 2.20 (t, J= 13.3 Hz, 1H), 1.91-1.04 (in, 23 H), 1.34 (s, 3H, Me), 1.23 (s, 3H, Me), 1.04-0.91 (in, 86H), 0.89 (s, 3H, Me), 0.80-0.54 (in,56H); 3 C NMR (125.77 MHz, CDCl 3) 6 212.12, 183.57, 174.57, 143.28, 122.32, 103.27, 101.72, 101.27, 86.07, 78.98, 78.88, 76.68, 76.45, 76.04, 75.99, 75.28, 74.99, 65.56, 60.44, 54.06, 49.52, 49.02, 46.47, 46.33, 41.56, 40.36, 39.76, 38.02, 36.29, 35.31, 34.85, 32.78, 32.43, 31.66, 30.61, 26.67, 25.14, 24.42, 23.42, 20.41, 17.05, 15.93, 12.15, 7.66, 7.55, 7.36, 7.25, 7.07, 6.98, 6.91, 6.04, 5.81, 5.59, 5.50, 5.42, 5.40, 5.15, 4.58; FTIR (neat film) 2953, 2912, 2877, 1722, 1460, 1414, 1378, 1239, 1163, 1103, 1007, 973, 825, 801, 738 cm-1; LRMS (ESI) m/z: Calcd for CioiH O 1 98 20SigNa
(M+Na+) 2006.2, found 2006.5.
[003171 S16 Rf= 0.74 (benzene/ethyl acetate 4:1); characteristic resonances from IH NMR (500 MHz, CDCl3) 69.39 (s, 1H), 5.33 (s, 1H), 5.02 (d, J= 2.2, 1H), 4.60 (s, 1H), 4.51 (s, 1H), 4.46 (in, 1H), 4.25 (d, J= 7.3, 1H), 4.15 (d, J= 6.7, 1H), 3.92 (s, 1H), 3.83 (d, J= 5.6, 1H), 3.77 (s, 1H), 3.55 (in, 1H), 3.37 (d, J= 8.7, 1H), 3.28 (in, 1H), 2.93 (dd, J= 14.0, 3.7, 1H), 2.20 (in, 1H), 1.36 (s, 3H), 1.17 (d, J= 6.2, 3H), 1.14 (s, 3H), 0.89 (s, 3H); 3 C NMR (126 MHz, CDCl3 ) 6 143.35, 122.24, 102.81, 99.43, 97.18, 82.71, 77.86, 76.28, 75.83, 74.84, 74.05, 73.68, 73.09, 71.62, 70.85, 70.49, 60.71, 54.47, 48.98, 48.43, 46.53, 41.54, 40.85, 39.83, 38.06, 36.82, 36.10, 35.31, 34.81, 32.83, 32.32, 31.34, 30.66, 26.64, 24.45, 23.60, 20.50, 18.42, 16.92, 16.12, 10.88, 7.42, 7.38, 7.30, 7.23, 7.20, 7.17, 7.11, 7.04, 6.95, 5.62, 5.57, 5.47, 5.45, 5.40, 5.23, 5.15, 5.11, 4.62; FTIR (neat film) 2953, 2913, 2876, 1724, 1459, 1414, 1379, 1240, 1108, 1006, 974, 909, 885, 856, 821, 779, 738 cm-1; LRMS (ESI) m/z: Calcd for C 2 H2 000 2 SigNa (M+Na+) 2020.3, found 2020.3.
0 OH 0 OH Me Me Me HBnOC MeMe Me H H02 C MeHn 2 Et SiO X-0 EtA Si- - 0 3 EtCt3 HO H Me 0 'Me EtSiO V0, EtASi- Et 3 O SO_ HO H Me 0 MeMe Et3SiO Et 3SiO O H EtSi' e Et 3SiO Et 3SiO O H Et 3Sim EtaSiO OSiEta Eta3SiO jSiEt3 O EtaSiO S14 Et 3SiO 21
[003181 O-(16-0-triethylsilyl-quillaicacid)4-0-triethylsilyl-[(2,3,4-tri-0-triethylsilyl $-D-xylopyranosyl)-(1-3)]-[(2,3,4,6-tetra-O-triethylsilyl-$-D-galactopyranosyl-(1+2)]-$-D glucuronoside benzyl ester (21). To a solution of S14 (81.3 mg, 0.0409 mmol, 1.00 equiv), tri-t butylpyridine (102 mg, 0.412 mmol, 10.1 equiv) and pyridine (30 pL, 0.37 mmol, 9.1 equiv) in dichloromethane (0.68 mL) was added benzyl chloroformate (15 pL, 0.11 mmol, 2.6 equiv). After 6 h, additional benzyl chloroformate (3.0 pL, 0.021 mmol, 0.51 equiv) was added to the reaction. After stirring for 20 h, the reaction was concentrated and purified by silica gel chromatography (benzene/ethyl acetate 1:0 to 24:1) to afford 21 (58.0 mg, 0.00279 mmol, 68% yield) as a white solid. Rf= 0.69 (benzene/ethyl acetate 9:1); (500 MHz, CDCl3) 6 9.70 (s, 1H, CHO), 7.40-7.27 (in, 5H, aromatic), 5.34 (in, 1H, R 2C=CHR), 5.28 (d, J= 12.5 Hz, 1H, PhCH 2 ), 5.09 (d, J= 12.3 Hz, 1H, PhCH 2-), 4.55 (d, J= 7.6 Hz, 1H), 4.53 (in, 1H), 4.42 (d, J= 7.3 Hz, 1H), 4.12 (d, J= 7.6 Hz, 1H), 3.97-3.71 (in, 8H), 3.64-3.53 (in, 3H), 3.48 (in, 1H), 3.39 (dd, J= 9.3, 2.5 Hz, 1H), 3.37-3.31 (in, 2H), 3.25 (t, J= 8.0 Hz, 1H), 3.12 (t, J= 10.9 Hz, 1H), 2.94 (dd, J= 14.0,3.7 Hz, 1H), 2.21 (t, J= 13.7 Hz,1H), 1.93-1.04 (m 20H), 1.35 (s, 3H, Me), 1.30 (s, 3H, Me), 1.04-0.84 (in, 90H), 0.84-0.53 (in, 56H), seeproton NMR below; 3C NMR (125.77 MHz, CDCl 3) 6 212.59, 182.49, 168.53, 143.44, 135.45, 128.62, 128.43, 128.29, 122.31, 103.63, 101.55, 101.01, 86.22, 79.02, 78.90, 76.61, 76.25, 76.02, 75.27, 75.12, 72.79, 72.67, 71.59, 71.22, 66.98, 65.51, 60.47, 54.05, 49.58, 48.90, 46.52, 46.31, 41.61, 40.35, 39.76, 38.07, 36.28, 35.31, 34.78, 32.81, 32.49, 31.68, 30.63, 26.68, 25.47, 24.45, 23.43, 20.40, 16.97, 15.86, 12.29, 7.69, 7.59, 7.38, 7.27, 7.12, 6.99, 6.92, 6.07, 5.81, 5.61, 5.53, 5.51, 5.43, 5.40, 5.16, 4.58; FTIR (neat film) 2954, 2914, 2877, 1754, 1723, 1705, 1459, 1414, 1379, 1240, 1170, 1103, 1073, 1007, 972, 825, 801, 739 cm-1; LRMS (ESI) m/z: Calcd for CsH 2 0 4 0 2 SigNa (M+Na+) 2096.3, found 2096.7.
FINAL ASSEMBLY OF SEMISYNTHETIC QS-7-API H Ph BnO 000 4O'__-O~n 0 OHO0 Me Me H Bn Me 1O Bn 2C Me HN0 0 BnO On H EO OBn H Ph EtESt3S Me 0 SOH MeMe H M nOM OAn 3EtSiO EtSiO 00 H H Et3 SiO Met3SiO OnH 00
Et3Et3SSiEt 3 21 OSAc Me11 EtSij::Me H O_'4 0 EtO Et3SjO Me0 16 B0~ ~ BnO Me 0eM 0 t0SOXn OBn
0 0 0 0 M 1 ( , Mm Bn02C Me Me Me tH H 0 O~ Ei0~E~ HO HMe M ~t SO~tSiO.> 3 1 O H0 tS e y 01 Me'M
Et 3SiO
[003191 Fully-protected semisynthetic QS-7-Api (S15). Asolution of boron trifluoride diethyl etherate (0.50 jaL, 0.0040 mmol, 1.0 equiv) in dichioromethane (20 jaL) was added to a solution of the imidate 16 (8.3 mg, 0.0041 mmol, 0.98 equiv) and 21 (12.7 mg, 0.00612 mmol, 1.50 equiv) in dichloromethane (0.50 mL) with 4A molecular sieves (86 mg) at -78 °C. The reaction temperature was allowed to warm to 23 °C slowly, and triethylamine (2.8 pL) was added after 14.5 h. The reaction was concentrated and purified by silica gel chromatography (silica pretreated with 0.1% triethylamine in benzene, then benzene/ethyl acetate 99:1 to 24:1) to afford S15 (8.5 mg, 0.0033 mmol, 80% yield). Rf= 0.52 (benzene/ethyl acetate 19:1); characteristic resonances from IH NMR: (500 MHz, CDCl3 ) 6 9.69 (s, 1H, -CHO), 7.49-7.04 (in, H, aromatic), 5.94 (s, 1H), 5.83 (s, 1H), 5.31 (d, J= 7.2 Hz, 1H), 5.29-5.23 (in,2H), 5.12-5.06 (in, 2H), 5.01 (s, 1H), 4.93 (d, J= 11.9 Hz, 1H), 4.91-4.44 (in, 19H), 4.42 (d, J= 7.3 Hz, 1H), 4.37 (d, J= 4.7 Hz, 1H), 4.35 (d, J= 3.9 Hz, 1H), 4.23 (dd, J= 2.5, 8.7 Hz, 1H), 4.19 (d, J= 7.3 Hz, 1H), 4.10-4.07 (in, 2H), 3.98-3.43 (in, 2H), 3.43-3.29 (in, 7H), 3.29-3.08 (in, 6H), 2.97 (dd, J = 13.8, 3.5 Hz, 1H), 2.83 (bs, 1H), 2.73 (bs, 1H), 2.10 (s, 3H, -C(O)CH 3), 1.54 (s, 3H, Me), 1.40 (s, 3H, Me), 1.30 (s, 3H, Me), 1.12 (s, 3H, Me); see proton NMR below; 1C NMR (125.77 MHz, CDCl3 ) 6 212.57, 176.57, 170.56, 168.54, 142.90, 139.36, 139.17, 138.90, 138.61, 138.14,
138.02, 136.90, 135.46, 128.82, 128.61, 128.54, 128.43, 128.36, 128.32, 128.27, 128.21, 128.07, 127.91, 127.80, 127.69, 127.62, 127.56, 127.43, 127.39, 127.24, 127.04, 109.06, 107.31, 106.46, 103.64, 101.91, 101.75, 101.56, 101.00, 99.70, 99.54, 93.81, 91.69, 87.28, 86.19, 84.99, 82.50, 80.58, 79.16, 79.02, 78.90, 78.51, 76.61, 76.35, 76.24, 76.00, 75.72, 75.44, 75.28, 74.82, 74.67, 74.41, 73.69, 73.34, 73.07, 72.96, 72.86, 72.79, 72.66, 72.52, 71.57, 71.23, 70.26, 68.92, 68.48, 66.96, 65.61, 63.99, 60.45, 54.05, 49.58, 48.92, 46.67, 46.26, 41.56, 40.14, 38.19, 36.20, 34.50, 33.07, 32.68, 30.79, 29.85, 28.23, 26.68, 26.50, 25.51, 24.74, 23.61, 22.85, 20.95, 20.44, 18.53, 17.83, 17.68, 16.67, 16.06, 14.27, 12.36, 7.76, 7.60, 7.39, 7.30, 7.27, 7.11, 6.99, 6.92, 6.07, 5.80, 5.60, 5.52, 5.43, 5.40, 5.17, 4.58; FTIR (neat film) 2953, 2935, 2914, 2877, 1747, 1456, 1377, 1239, 1239, 1172, 1100, 1008, 824, 735, 697 cm-.
H Ph
BnO 000 O OBn O BnO Me OBn S15 O OBn EtSION0. I Bn HH Me OBn 0 0 Me Me 0 BnO2C Me H A OAc 0 H MeO0 HH OH E StS 0Et 3 SiO H Me EO 0 E P- HMe H Me Et 3SiO Et 3SiO 0 CHOH Et 3Si Me 0
Et 3SO HO~Mel OH
00 0 Me OH
Me Me H 0 O0 0Me H 'fM HO HO 2C HH OOH HHHOH Me HO MeHO M 0HOH0H H Me HOOH HO\ O/ H QS-7-Api (1) HO
[00320] Semisynthetic QS-7-Api (1). A solution of fully-protected semisynthetic QS-7 Api S15 (1.1 mg, 0.00028 mmol, 1.0 equiv) in tetrahydrofuran (1.0 mL) and ethanol (1.0 mL) in a 10-mL round-bottom flask was charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (2.2 mg, 0.00094 mmol, 3.7 equiv). The reaction suspension was stirred under hydrogen pressure (50 psi) for 15 h and then was filtered through a 0.45 pm polyvinylidene fluoride filter disk. The filter was washed with methanol (4 mL), and the filtrate and rinsing were concentrated in a 25-mL round bottom flask to give a clear residue. The reaction flask was cooled to 0 °C and charged with a pre-cooled (0 °C) solution of trifluoroacetic acid (1.0 mL, TFA/water 1:1). After stirring for 95 min, the reaction mixture was concentrated in vacuo at 0 °C. The resulting white solid residue was purified by RP-HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 3237% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The fraction containing the major peak (tR = 14.85 min) was collected and lyophilized to dryness. A total of three deprotection runs were performed on S15 (3.3 mg, 0.00084 mmol) to afford semisynthetic QS-7-Api (1) (1.2 mg, 0.00064 mmol, 77% yield) as a white solid. 'H NMR (500 MHz, 7:3 D 2 0:CD3CN) 69.36 (s, 1H, -CHO), 5.39 (d, J= 8.0 Hz, 1H), 5.34 (in, 1H, R 2C=CHR), 5.22 (d, J= 3.1 Hz, 1H), 5.12 (d, J= 2.9 Hz, 1H), 5.03 (s, 1H), 4.86 (s, 1H), 4.67 (d, J= 7.7 Hz, 1H), 4.63 (d, J= 7.8 Hz, 1H), 4.55 (d, J= 7.7 Hz, 1H), 4.50 (d, J= 7.7 Hz, 1H), 4.33 (in, 1H), 4.05 (d, J= 10.1 Hz, 1H), 4.02 (in, 1H), 3.99-3.94 (in, 2H), 3.92-3.57 (in, 22H), 3.55-3.45 (in, 7H), 4.33 (in, 1H), 3.42-3.15 (in, 12H), 2.86 (dd, J= 14.5, 3.6 Hz, 1H), 2.14 (s, 3H, -C(O)CH3),1.89-1.30 (in, 14H), 1.28 (s, 3H, Me), 1.22 (d, J= 6.2 Hz, 3H, Me), 1.15 (d, J= 6.1 Hz, 3H, Me), 1.08 (s, 3H, Me), 1.05 (in, 1H), 1.02 (in, 1H), 0.99 (d, J= 6.3 Hz, 3H, Me), 0.93 (s, 3H, Me), 0.89 (s, 3H, Me), 0.84 (s, 3H, Me), 0.71 (s, 3H, Me).
Example 2
[00321] This Example demonstrates that certain methods described above for Example 1 are applicable to substrates that differ in chemical structure.
FINAL ASSEMBLY OF SEMISYNTHETIC QS-21-API Me Me TBS Me.r TBS, Me.,
0 OH O O OTBS BnO Bn eMe Me H 0 0h
eOMe O O TBS OTBS TES OTES 0 H CHO H Me 10 'Me OC(NH)CC 3 00 7TEo H TES' Me , U TESO\4 OTES 13O0BnO-'-- Bn 139 0 O TESO 0 Me Me23 Me Me
,Me Me 0 0 0 10 O O O OTBS
0 0 0 2~ M H Ph TBSOW TB OTBS 0 O .Me Me O Me Me BnO Me M OBn T SE O H TES HMe H
TS OS140 Me '
TESO
[00322] Fully protected QS-21-Api (140). A solution of boron trifluoride diethyl etherate (0.49 pL, 0.0039 mmol, 0.50 equiv) in dichloromethane (10 pL) was added to a solution of imidate 23 (17.6 mg, 0.00780 mmol, 1.00 equiv) and carboxylic acid 139 (24.3 mg, 0.0117 mmol, 1.50 equiv) in dichloromethane (0.260 mL) with 4A molecular sieves (50 mg) at -78 °C. The reaction temperature was allowed to warm to 23 °C slowly, and triethylamine (20 pL) was added after 16 h. The reaction was concentrated and purified by silica gel chromatography (silica pretreated with 0.2% triethylamine in benzene, then benzene/ethyl acetate 99:1 to 47:3) to afford 140 (13.8 mg, 0.0033 mmol, 42% yield) as a clear film. Rf= 0.42 (benzene/ethyl acetate 19:1); characteristic resonances from 1H NMR (500 MHz, CDC 3 ) 69.68 (s, 1H), 5.96 (s, 1H), 5.71 (s, 1H), 5.28 (d, J= 12.4, 1H), 5.09 (d, J= 12.4, 1H), 4.19 (d, J= 7.2, 2H), 2.92 (dd, J= 13.6, 3.7, 1H), 2.23 (t, J= 13.5, 1H), 1.42 (s, 3H), 1.34 (s, 3H), 1.29 (s, 3H), 1.26 (s, 3H), 1.22 (s, 3H);1 3 C NMR (126 MHz, CDCl 3 ) 6 171.03, 170.73, 168.51, 138.25, 138.12, 137.41, 136.92, 135.43, 129.75, 128.65, 128.62, 128.57, 128.54, 128.43, 128.40, 128.29, 128.26, 127.97, 127.93, 127.85, 127.81, 127.62, 127.32, 107.37, 106.52, 91.72, 87.23, 85.97, 84.24, 81.34, 79.22, 79.03, 78.38, 76.62, 76.20, 75.97, 75.28, 74.13, 73.72, 73.41, 73.10, 72.75, 71.92, 71.59, 71.20, 67.00, 63.87, 63.27, 60.43, 54.11, 49.01, 43.58, 41.68, 40.86, 40.04, 39.56, 36.98, 36.30, 32.96, 30.66, 29.88, 27.56, 26.55, 26.12, 26.06, 25.94, 25.90, 25.09, 24.59, 24.23, 18.53, 18.10, 18.04, 18.02, 17.87,
17.74, 17.28, 16.45, 14.66, 14.59, 12.35, 12.12, 7.70, 7.60, 7.53, 7.39, 7.32, 7.30, 7.27, 7.12, 7.04, 6.99, 6.93, 6.07, 5.80, 5.61, 5.53, 5.49, 5.42, 5.40, 5.18, 5.05, 4.58, -4.09, -4.29, -4.36, 4.38, -4.45, -4.57, -4.77, -5.07, -5.17; FTIR (neat film) 2954, 2935, 2877, 1735, 1458, 1380, 1250, 1163, 1096, 1005, 836, 777, 737, 698 cm-I; LRMS (ESI) m/z: Caled for
6 4Na 2 (M+2Na")2105.2, found 2106.2. C2 2 1H3 8 2 04 Sii Me Me TBS, me TBMe 0 0 0
0 O OTBS BnO0 ,BnOUjH Ph 0 0M Me O Me 0 TBSO OTBS 0 MMe H0 BnO Me TEO OTES O H H M OBn OBn TES TES OTES 10 Me Me OTES0 H TE 6 Me TESO\ 0 TESO1 TES140 Me M TESO Me Me Me Me
0 HO M0 HH OH OH HM HO HO HO O
H0CMe Me H ,OOH 2 MeMe H OH--O HO- 0 HO- [ L. "Me 0 , 0_ ~ HO 0 CH] Me HO HO Me HO H 0 HCHH Me
HO QS-21-Api (4)
[00323] QS-21-Api (4). Three solutions of fully protected second-generation QS-2-Api 140 (3 x 2.0 mg, 0.0014 mmol, 1.0 equiv) in tetrahydrofuran (3 x 1.0 mL) and ethanol (3 x 1.0 mL) in three 10-mL round-bottom flasks were charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (3 x 3.8 mg, 0.0054 mmol, 3.7 equiv). The reaction suspensions were stirred under hydrogen pressure (50 psi) for 23 h and then filtered through three 0.45 pm polyvinylidene fluoride filter disks. The filters were washed with methanol, and the filtrate and rinsing were concentrated in three 25-mL round bottom flasks to give the partially protected product as a clear residue.
[00324] The reaction flasks were cooled to 0 °C and charged with a pre-cooled (0 C) solution of trifluoroacetic acid (3 x 1.0 mL, TFA/water 3:1). After stirring for 75 min, the reaction mixtures were concentrated in vacuo at 0 °C. The resulting white solid residue was purified by RP-HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 35-45% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The fractions containing the major peak (tR= 27.6 min) were collected and lyophilized to afford synthetic QS-21-Api (4) (1.4 mg, 0.00070 mmol, 49% yield) as a white solid. LRMS (ESI) m/z: Calcd for C 92 H1 4 7 0 4 6 (M-H) 1987.92, found 1988.33. The IH NMR spectrum of QS-21-Api (4) was found to be in agreement with the previously reported characterization.
Me Me TBS, Me*r TBS, OMe 0 0 00
0 OH O 0 OTBS Me Me H BnO I TS VOTBS B (Me 0 Me M nOH M Me Me 8 H Bn OBn O TES 0 H H M TES' Me OBnI OBn Me TESO TES 139 Me 'M
TESO0 BnO Me "Me OZ O OTB TESOMe 126
Me Me TBS, Me., TBS, Me 0 0 0 0 OB BnO 00
TEO BnO M OOBn 'OTEOTES0 H0 O T0S MeO Me T ESO\O Me '
TESO\ CTS1 41 Me M TESO
[00325] Fully protected QS-21-Xyl (141). A solution of boron trifluoride diethyl etherate (0.33 pL, 0.0026 mmol, 0.50 equiv) in dichloromethane (10 pL) was added to a solution of imidate 126 (12.4 mg, 0.00529 mmol, 1.00 equiv) and carboxylic acid 139 (15.8 mg, 0.00761 mmol, 1.44 equiv) in dichloromethane (0.176 mL) with 4A molecular sieves (62 mg) at -78 °C. The reaction temperature was allowed to warm to 23 °C slowly, and triethylamine (20 pL) was added after 21 h. The reaction was concentrated and purified by silica gel chromatography (silica pretreated with 0.5% triethylamine in benzene, then benzene/ethyl acetate 99:1 to 97:3:3) to afford 141 in about 77% purity (14.2 mg, 0.0026 mmol, 49% yield) as a clear film. Rf = 0.49 (benzene/ethyl acetate 19:1); characteristic resonances from IH NMR (500 MHz, CDCl 3) 6 9.68 (s, 1H), 5.28 (d, J= 12.4, 1H), 5.20 (d, J= 1.6, 1H), 5.09 (d, J= 12.3, 1H), 4.97 (m, 1H), 4.94 (d,
J= 11.5, 1H), 4.92 (d, J= 7.8, 1H), 4.47 (d, J= 10.1, 1H), 4.42 (d, J= 7.2, 1H), 4.37 (d, J= 10.7, 1H), 4.18 (d, J= 7.1, 2H), 3.13 (t, J= 10.8, 1H), 3.04 (t, J= 10.9, 1H), 2.92 (dd, J= 14.6, 3.9, 1H), 2.22 (t, J= 13.8, 1H), 1.43 (s, 3H), 1.34 (s, 3H), 1.28 (s, 3H), 1.26 (s, 3H), 1.22 (s, 3H); 1C NMR (126 MHz, CDCl 3) 6 175.39, 171.03, 170.72, 168.51, 143.57, 138.90, 138.87, 138.67, 138.47, 138.38, 137.42, 135.43, 128.62, 128.60, 128.51, 128.48, 128.44, 128.42, 128.34, 128.29, 128.15, 128.12, 128.11, 127.97, 127.78, 127.73, 127.60, 109.74,107.38, 103.71, 103.28, 102.41, 101.56, 100.99, 93.65, 86.02, 84.20, 84.00, 82.82, 82.79, 79.87, 79.20, 79.03, 78.92, 78.52, 78.35, 76.66, 76.20, 76.00, 75.79, 75.73, 75.26, 75.15, 74.58, 74.45, 73.48, 73.26, 72.81, 72.66, 72.01, 71.58, 71.25, 67.14, 66.96, 66.32, 65.54, 64.03, 63.81, 63.28, 60.40, 54.10, 49.60, 48.99, 46.35, 43.65, 42.79, 41.69, 40.91, 40.02, 39.52, 38.67, 37.00, 36.29, 32.90, 32.71, 30.65, 29.89, 27.58, 26.61, 26.12, 26.06, 25.94, 25.90, 25.72, 25.03, 24.52, 24.23, 18.55, 18.10, 18.07, 18.04, 18.02, 17.62, 17.25, 16.40, 16.05, 14.65, 14.60, 12.35, 12.23, 12.08, 7.70, 7.60, 7.39, 7.32, 7.29, 7.27, 7.12, 6.99, 6.93, 6.07, 5.81, 5.61, 5.53, 5.48, 5.42, 5.18, 5.03, 4.58, -4.08, -4.11, -4.30, 4.36, -4.38, -4.44, -4.57, -4.74, -5.07, -5.17; FTIR (neat film) 2955, 2877, 1735, 1458, 1380, 1250, 1165, 1091, 1006, 837, 777, 735, 698 cm-1; LRMS (ESI) m/z: Caled for C2 2 8H 3 9 004Si 4Na 2 (M+2Na")2151.2, found 2151.6.
Me Me TBSO Mek TBS,O Me 00
OTBS BnOO 00 0 MeB
00 Me OBn TBSO OTBS 0 0 Me Me H n Bn O Bno° Me H HHe TTESO 0 OO OOOHBn OTEM 0 HOS(\T/ MTES Me Me O H4O O1 H H O Me Me Me Me TESO Me OM O MeOM OHO OHMe HHO OMO 0 0 OH HO0 0 0 00 Me OH HO OH me Me H O,/--H H0 Me H OHHO y.-4-OH HO- 0 ICHIMA 0O~ HO 0 H H MeHO "Me HO Me HO Y.H 0 H H me
HO QS-21-Xyl (5)
[003261 QS-21-Xyl (5). Three solutions of fully protected second-generation QS-2-Xyl 141 (3 x 2.0 mg, 0.0014 mmol, 1.0 equiv) in tetrahydrofuran (3 x 1.0 mL) and ethanol (3 x 1.0 mL) in three 10-mL round-bottom flasks were charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (3 x 3.8 mg, 0.0054 mmol, 3.7 equiv). The reaction suspensions were stirred under hydrogen pressure (50 psi) for 23 h and then filtered through three 0.45 pm polyvinylidene fluoride filter disks. The filters were washed with methanol, and the filtrate and rinsing were concentrated in three 25-mL round bottom flasks to give the partially protected product as a clear residue.
[00327] The reaction flasks were cooled to 0 °C and charged with a pre-cooled (0 C) solution of trifluoroacetic acid (3 x 1.0 mL, TFA/water 3:1). After stirring for 75 min, the reaction mixtures were concentrated in vacuo at 0 °C. The resulting white solid residue was purified by RP-HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 35-45% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mLmin. The fractions containing the major peak (tR= 27.7 min) were collected and lyophilized to afford synthetic QS-21-Xyl (5) (1.4 mg, 0.00070 mmol, 50% yield) as a white solid. LRMS (ESI) m/z: Calcd for C 92 H14 7 0 4 6 (M-H) 1987.92, found 1987.94. The IH NMR spectrum of QS-21-Xyl (5) was found to be in agreement with the previously reported characterization.
Example 3
N OBz N 3 OBn
BzO O BnO-fO
221 218
[003281 3,6-Di-O-benzyl-4-azido-4-deoxy-D-galactal (218). Sodium hydroxide (0.115 g, 2.89 mmol, 0.357 equiv) was added to a solution of glycal 221 (2.930 g, 8.063 mmol, 1.000 equiv) in methanol (40 mL) at 0 °C, and the reaction was stirred at 23 °C. After 14 h, the reaction was concentrated to a sticky tan solid, and trace solvent was removed by co-evaporation with toluene (7 mL).
[00329] Dimethylformamide (40 mL) was added to the residue, and the resulting brown suspension was cooled to 0 °C. Sodium hydride (60% dispersion in oil, 0.977 g, 24.4 mmol, 3.03 equiv) was added to the reaction, followed by benzyl bromide (4.80 mL, 40.3 mmol, 5.01 equiv). After 3 h, the orange suspension was stirred at 23 °C for 16 h. The reaction was quenched with methanol (20 mL), diluted with dichloromethane (100 mL), and washed with water (100 mL). The aqueous layer was extracted with dichloromethane (80 mL), and the combined organic layers were washed with water (100 mL), dried with magnesium sulfate, and purified by silica gel chromatography (hexane/ethyl acetate 9:1 to 4:1) to afford 218 (2.199 g, 6.258 mmol, 78% yield) as a yellow oil. Rf= 0.61 (hexane/ethyl acetate 3:1); IH NMR (400 MHz, CDCl3) 6 7.41 7.26 (in, 1OH), 6.37 (dd, J= 6.3, 1.9, 1H), 4.83 (dt, J= 6.4, 1.8, 1H), 4.70 (d, J= 12.0, 1H), 4.63 (d, J= 11.9, 1H), 4.61 (d, J= 11.8, 1H), 4.55 (d, J= 11.8, 1H), 4.41 (in, 1H), 4.08 (t, J= 6.6, 1H), 3.97 (in, 1H), 3.70 (dd, J= 6.6, 1.7, 2H; 'C NMR (126 MHz, CDCl 3) 6 144.69, 137.76, 137.69, 128.68, 128.67, 128.14, 128.09, 128.04, 127.76, 101.00, 74.66, 73.84, 71.57, 70.92, 68.84, 55.39; FTIR (neat film) 3031.5, 2868.5, 2109.9, 1650.9, 1496.5, 1454.2, 1333.0, 1277.3, 1230.7, 1097.1, 1052.8, 1028.2, 735.9, 697.6, 668.1 cm- ; HRMS (ESI) m/z: Calcd for C2 oH 2 IN 30 3Na (M+Na+) 374.1481, found 374.1479.
N (OBn N 3<OBn
BnO- 2 BnO OA OAc 218 222
[003301 O-Acetyl 2-0-acetyl-4-azido-4-deoxy-3,6-di-O-benzyl-p-D-galactopyranoside (222). Boron trifluoride diethyl etherate (74.0 pL, 0.636 mmol, 0.219 equiv) was added to a solution of glycal 218 (1.020 g, 2.904 mmol, 1.000 equiv) and iodobenzene diacetate (1.119 g, 3.474 mmol, 1.196 equiv) in dichloromethane (36 mL) in a cold bath at -50 °C. After 25 min, the yellow solution was transferred to a cold bath at -25 °C and stirred for an additional 30 min. Triethyl amine (2.0 mL) was added, and the resulting suspension was diluted with dichloromethane (20 mL) and washed with saturated aqueous sodium bicarbonate solution (30 mL). The aqueous layer was extracted with dichloromethane (30 mL), and the combined organic layers were dried with magnesium sulfate and purified by silica gel chromatography (hexane/ethyl acetate 4:1 to 3:1) to afford 222 (1.163 g, 2.477 mmol, 85% yield) as a yellow solid. Rf= 0.25 (hexane/ethyl acetate 3:1); 1 H NMR (400 MHz, CDCl 3) 6 7.41 - 7.28 (in, 1OH), 5.51 (d, J= 8.3, 1H), 5.30 (dd, J= 9.8, 8.4, 1H), 4.74 (d, J= 12.2, 1H), 4.56 (d, J= 12.3, 1H), 4.54 (s, 2H), 4.08 (dd, J= 3.6, 1.1, 1H), 3.74 (td, J= 6.7, 1.3, 1H), 3.69 (dd, J= 9.8, 3.6, 1H), 3.63 (d, J= 6.8, 2H), 2.06 (s, 3H), 2.00 (s, 3H); 'C NMR (126 MHz, CDCl 3) 6 169.50, 169.38, 137.51, 137.25, 128.73, 128.69, 128.32, 128.23, 128.20, 127.92, 92.47, 78.73, 73.86, 72.60, 72.23, 69.78, 67.82, 59.10, 20.96, 20.88; FTIR (neat film) 2920.8, 2107.7, 1755.9, 1454.8, 1 ; HRMS (ESI) m/z: Caled for C2 H N 0 Na 1368.4, 1232.5, 1214.6, 1059.1, 739.3, 698.4 cm- 4 27 3 7
(M+Na+) 492.1747, found 492.1755.
N 3 OBn N 3 OBn 4 BnO OOAc BnO O OAc HO OH
222 223
[00331] 4-azido-4-deoxy-3,6-di-O-benzyl-D-galactopyranose(223).Potassium carbonate (0.600 g, 4.34 mmol, 3.99 equiv) was added to a solution of diacetate 222 (0.511 g, 1.09 mmol, 1.00 equiv) in methanol (50 mL) and water (5 mL). After 1.5 h, the yellow solution was decanted from the undissolved potassium carbonate and concentrated to about 4 mL and then diluted with dichloromethane (50 mL) and washed with saturated aqueous sodium bicarbonate solution (10 mL). The aqueous layer was extracted with dichloromethane (2 x 10 mL) and the combined organic layers were dried with magnesium sulfate and purified by silica gel chromatography (ethyl acetate) to afford 223 (0.353 g, 0.917 mmol, 84% yield) as a yellow oil (1:1 ia:). Rf= 0.17, 014 (hexane/ethyl acetate 1:1); 1 H NMR (400 MHz, CDCl 3) 6 7.43 7.27 (in, 20H), 5.28 (d, J= 3.8, 1H), 4.78 (d, J= 11.5, 1H), 4.78 (d, J= 11.5, 1H), 4.67 (d, J= 11.5, 1H), 4.68 (d, J= 11.5, 1H), 4.58 (d, J= 11.9, 1H), 4.56 (d, J= 11.9, 1H), 4.52 (d, J= 11.9, 1H), 4.51 (d, J= 11.9, 1H), 4.51 (d, J= 7.7, 1H), 4.21 (td, J= 6.5, 1.1, 1H), 4.02 (dd, J= 3.4, 1.3, 1H), 3.99 (dd, J= 9.9, 3.8, 2H), 3.85 (dd, J= 9.7, 3.5, 1H), 3.73 (dd, J= 9.5, 7.7, 1H), 3.69 3.51 (in, 6H); 'C NMR (126 MHz, CDCl 3) 6 137.62,137.50,137.48,128.67,128.59,128.16, 128.13, 128.10, 128.09, 128.07, 128.02, 128.00, 97.08, 92.50, 80.85, 78.06, 73.64, 73.61, 72.63, 72.51, 72.14, 71.82, 69.25, 68.76, 68.68, 67.38, 60.27, 59.49; FTIR (neat film) 3401.3, 3032.4, 2921.6, 2105.6, 1454.4, 1367.2, 1279.3, 1095.8, 1028.3, 738.1, 698.0 cm-1; HRMS (ESI) m/z: Calcd for C 2 0H23N 3 0sNa (M+Na+) 408.1535, found 408.1535.
N 3 OBn N OBn
BnO O - BnO- OTIPS HO OH OH 223 224
[00332] O-triisopropylsilyl 4-azido-4-deoxy-3,6-di-O-benzyl-p-D-galactopyranoside (224). Triisopropylsilyl chloride (0.63 mL, 3.0 mmol, 1.2 equiv) was added to a solution of hemiacetal 223 (0.959 g, 2.49 mmol, 1.00 equiv), imidazole (0.409 g, 6.01 mmol, 2.41 equiv), and 4-dimethylaminopyridine (29 mg, 0.24 mmol, 0.096 equiv) in dimethylformamide (2.5 mL). After 19 h, the yellow solution was concentrated and purified by silica gel chromatography (hexane/ethyl acetate 19:1 to 9:1) to afford 224 (0.800 g, 1.48 mmol, 59% yield) as a colorless oil. Rf= 0.49 (hexane/ethyl acetate 4:1); 1H NMR (500 MHz, CDCl3) 6 7.43 - 7.24 (in, 10H), 4.78 (d, J= 11.8, 1H), 4.75 (d, J= 11.8, 1H), 4.55 (d, J= 11.6, 1H), 4.52 (d, J= 12.0, 1H), 4.51 (d, J= 7.3, 1H), 3.98 (d, J= 3.6, 1H), 3.72 (ddd, J= 9.5, 7.3, 2.1, 1H), 3.69 - 3.58 (in, 3H), 3.56 3 (dd, J= 9.6, 3.7, 1H), 2.26 (d, J= 2.2, 1H), 1.19 - 0.99 (in,21H); C NMR (126 MHz, CDC 3) 6 137.86, 137.84, 128.70, 128.63, 128.08, 128.05, 127.97, 127.93, 98.09, 80.69, 73.81, 73.78, 72.80, 72.01, 68.83, 59.83, 17.96, 17.90, 12.33; FTIR (neat film) 3463.8, 2943.4, 2866.2, 2108.6, 1455.3, 1366.1, 1280.0, 1185.4, 1099.0, 1028.7, 1014.6, 997.6, 883.5, 805.4, 736.3, 695.5, 669.0 cm- ; HRMS (ESI) m/z: Calcd for C2 9 H4 3 N 3 0 5 SiNa (M+Na+) 564.2870, found 564.2870.
H Ph N3 H Ph 3 T BnOOBn BnOO~
TIPS O OBn HO BnO O OBn OBnO OBn + OIS Me ~ 0 0f OBn O; 224 81 225 Me'Me Me'Me
[00333] Azido tetrasaccharide 225. Trifluoromethanesulfonic anhydride (70 pL, 0.42 mmol, 2.0 equiv) was added to a solution of trisaccharide 81 (0.168 mg, 0.203 mmol, 1.00 equiv), phenyl sulfoxide (173 mg, 0.855 mmol, 4.20 equiv) and 2,4,6-tri-tert-butylpyridine (262 mg, 1.06 mmol, 5.21 equiv) in dichloromethane (20 mL) at -78 °C. The reaction stirred in a cold bath at -78 °C for 8 min and then was transferred to a bath between -55 and -50 °C for 70 min. A solution of pyranoside 224 (137 mg, 0.253 mmol, 1.24 equiv) in dichloromethane (3.0 mL) at -78 °C was added via cannula, and the reaction was warmed slowly from -50 °C to 0 °C over 4 h and then stirred at 23 °C for 45 min. Triethylamine (1.0 mL) was added to the reaction mixture, which was concentrated and purified by silica gel chromatography (benzene/ethyl acetate 49:1 to 9:1) to afford tetrasaccharide 225 (185 mg, 0.137 mmol, 67% yield) as a clear film. Rf= 0.59 (benzene/ethyl acetate 9:1); 1H NMR (500 MHz, CDCl3) 6 7.53 - 7.18 (in, 30H), 5.95 (s, 1H), 5.67 (s, 2H), 4.89 (d, J= 7.6, 1H), 4.86 (d, J= 11.1, 1H), 4.72 (d, J= 11.6, 1H), 4.63 - 4.47 (in, 8H), 4.44 (d, J= 11.8, 1H), 4.41 (s, 1H), 4.13 (dd, J= 7.5, 5.7, 1H); 4.04 (d, J= 5.6, 1H), 4.01 (dd, J= 3.4, 0.8, 1H), 3.97 - 3.83 (in, 3H), 3.93 (s, 2H), 3.79 (t, J= 9.0, 1H), 3.69 - 3.53 (in, 7H), 3.36 (td, J= 9.6, 5.3, 1H), 3.24 (dd, J= 9.1, 7.6, 1H), 3.14 (dd, J= 11.6, 10.0, 1H), 1.48 (s, 3H), 1.34 (s, 3H), 1.23 (d, J= 6.2, 3H), 1.10 - 0.95 (in,21H); 'C NMR (126 MHz, CDCl3 ) 6 138.22, 138.12, 137.76, 137.01, 136.95, 129.72, 128.89, 128.79, 128.74, 128.63, 128.56, 128.52, 128.41, 128.38, 128.32, 128.32, 128.09, 128.01, 127.92, 127.83, 127.75, 127.59, 127.32, 109.15, 107.30, 106.46, 102.56, 97.27, 97.13, 91.65, 87.15, 82.33, 81.20, 78.43, 78.28, 78.49, 76.74, 76.26, 74.06, 73.99, 73.81, 73.66, 73.33, 72.97, 71.74, 71.67, 71.15, 68.68, 64.51, 63.78, 58.89, 27.95, 26.60, 18.07, 17.99, 17.93, 12.43; FTIR (neat film) 2927.8, 2866.8, 2108.8, 1455.1, 1367.0, 1184.5, 1092.1, 990.3, 735.7, 697.8 cm-1; HRMS (ESI) m/z: Calcd for C76H95N 301 7SiNa(M+Na+) 1372.6328, found 1382.6343.
N3 H Ph N3 H Ph BnO OBn O BnO OBn O 0 00 0 000 TIPS0 0 -0 0 00
OBnfl J Bn 0OBn 0 0nH0 0 Me 0 Me Me 225 OMe 226 Me Me
[00334] Azido tetrasaccharide hemiacetal 226. Tetrabutylammonium fluoride solution (1.0 M in tetrahydrofuran, 14 pL, 0.014 mmol, 1.0 equiv) was added to a solution of triisopropylsilyl acetal 225 (18.5 mg, 0.0137 mmol, 1.00 equiv) in tetrahydrofuran (1.8 mL) at 0 °C. After 17 min, methanol (1.0 mL) was added, and the solvent was removed in vacuo at 0 °C to give a pale yellow oil that was purified by silica gel chromatography (benzene/ethyl acetate 19:1 to 9:1) to afford 226 (15.2 mg, 0.0127 mmol, 93% yield). Rf= 0.61 (benzene/ethyl acetate 4:1); characteristic resonances from IH NMR (500 MHz, CDC 3) 6 7.54 - 7.20 (in, 30H), 5.96 (s, 1H), 5.69 (s, 1H), 4.87 (dd, J= 12.2, 7.5, 1H), 4.83 (d, J= 11.4, 1H), 4.72 (d, J= 11.7, 1H), 3.38 (in, 1H), 3.26 (in, 1H), 3.16 (in, 1H); FTIR (neat film) 3426.0,2933.1, 2107.1, 1454.6,1370.7,
1220.2, 1092.6, 1027.0, 992.4, 735.5, 698.3 cm- ; HRMS (ESI) m/z: Cald for C 7 H 7 N 3 01 7 Na (M+Na+) 1216.4994, found 1216.4939.
N3 H Ph BnN3 H Ph O OI O BnO OBn O 00OK O O0 O00O HO O OC(NH)CCl 3 Bn OBn OBn O BnO- POBn OBn
0 Me 0 Me 226 OMe 227 Me Me Me Me
[003351 Azido tetrasaccharide trichloroacetimidate 227. Trichloroacetonitrile (191 pL, 1.91 mmol, 150 equiv) and 1,8-diazabicyclo[5.4.0]undec-7-ene (7.6 pL, 0.051 mmol, 4.0 equiv) were added to a solution of hemiacetal 226 (15.2 mg, 0.0127 mmol, 1.00 equiv) at 0 °C. After 14 h at 0 °C and 45 min at 23 °C, the solution was concentrated and purified by silica gel chromatography (benzene/ethyl acetate 19:1 to 4:1) to afford 227 (16.2 mg, 0.0121 mmol, 95% yield) as a clear film. Rf= 0.50 (benzene/ethyl acetate 9:1); characteristic peaks from IH NMR (500 MHz, CDC 3)6 8.52 (s, 1H), 7.59 - 7.14 (in, 30H), 5.95 (s, 1H), 5.67 (s, 1H), 5.23 (s, 1H), 4.88 (d, J= 7.5, 1H), 4.79 (d, J= 10.8, 1H), 4.77 (d, J= 11.2, 1H), 4.67 (d, J= 11.7, 1H), 4.20 (dd, J= 10.0, 3.5, 1H), 3.83 (dd, J= 11.5, 5.5, 2H), 3.78 (t, J= 9.0, 1H), 3.33 (in, 1H), 3.21 (dd, J= 8.9, 7.8, 1H), 3.13 (dd, J= 11.7, 9.9, 1H), 1.21 (d, J= 6.0, 3H); C3NMR (126 MHz, CDC 3
) 6 161.14, 138.18, 138.09, 138.01, 137.63, 137.48, 136.89, 129.76, 128.70, 128.64, 128.56, 128.52, 128.46, 128.39, 128.21, 128.14, 128.11, 128.09, 127.95, 127.92, 127.84, 127.60, 127.31, 110.02, 109.41, 107.24, 106.55, 106.48, 101.83, 99.71, 95.88, 95.45, 91.73, 91.67, 91.19, 87.17, 80.69, 78.23, 77.26, 76.67, 76.60, 76.02, 74.68, 73.83, 73.81, 73.69, 73.36, 73.04, 72.68, 71.13, 69.97, 68.26, 64.96, 63.77, 60.35, 27.88, 26.55, 17.84, 17.60, 12.42; FTIR (neat film) 3031.0, 2932.9, 2110.8, 1671.8, 1454.8, 1368.6, 1280.7, 1242.2, 1220.8, 1095.6, 1020.2, 991.5, 912.4, 860.5, 795.0, 735.0, 698.1, 677.1 cm-1; HRMS (ESI) m/z: Calcd for C 9 H7 Cl 3N 4 01 7 Na (M+Na+) 1359.4091, found 1359.4127.
N3 H Ph 0O e H 0 X-; SBnOBn
BnO O 1(NH)CC 3
TSO- 0 S H Me eH0 03 H 0 eO P
TESO O OT E 2 Me TE oTES, 0 0 'M BnO-7---~ O~n TESO N3 H Ph BnoOBn 1% 000 0 000 0o TES B no- H 4 0 OBn2O-~-/IBn n
OTES-- 0 CHO H TMee M 0TS~~0 Me
TES0\? / MeE
TESO28
[003361 Azido saponin 228. Boron trifluoride diethyl etherate (2.0jaL, 0.016 mmol, 0.51 equiv) was added to a solution of imidate 227 (41.7 mg, 0.0311 mmol, 1.00 equiv) and carboxylic acid 139 (88.6 mg, 0.0427 mmol, 1.37 equiv) with 4A molecular sieves (147 mg) in dichloromethane (1.04 mL) at -78 °C. After 3 min, the reaction flask was transferred to a -43 °C cold bath (11:10 ethanol:water /C0 2), and the reaction temperature was allowed to warm slowly to 23 °C. Triethylamine (0.20 mL) was added after 14.5 h, and the reaction was concentrated and purified by silica gel chromatography (silica pretreated with 0.2% triethylamine in benzene, then benzene/ethyl acetate 49:1 to 9:1) to afford 228 (83.5 mg, 0.0257 mmol, 82% yield) as a white solid. Rf= 0.58 (benzene/ethyl acetate 9:1); characteristic resonances from IH NMR (500 MHz, CDC 3 ) 6 9.68 (s, 1H), 5.95 (s, 1H), 5.70 (s, 1H), 5.17 (d, J= 2.4, 1H), 5.08 (d, J= 12.4, 1H), 4.83 (d, J= 11.2, 1H), 4.79 (d, J= 7.6, 1H), 4.71 (d, J= 11.1, 1H), 4.61 (d, J= 11.1, 1H), 4.18 (d, J= 7.3, 1H), 4.11 (dd, J= 6.4, 2.7, 1H), 3.24 (m, 2H), 3.13 (m, 2H), 2.88 (dd, J= 14.1, 3.7, 1H), 2.20 (t, J= 13.5, 1H), 1.40 (s, 3H), 1.32 (s, 3H), 1.29 (s, 3H), 1.22 (s, 3H), 1.15 (d, J= 6.2, 3H), 0.85 (s, 3H); 3C NMR (126 MHz, CDC 3) 6 212.45,175.31, 168.49,143.39,138.22, 138.13, 138.09, 137.64, 137.11, 136.89, 135.42, 129.73, 128.70, 128.63, 128.60, 128.57, 128.55, 128.53, 128.43, 128.40, 128.38, 128.27, 128.12, 128.04, 127.98, 127.96, 127.91, 127.83, 127.78, 127.60, 127.30, 121.97, 109.70, 107.32, 106.50, 103.64, 102.30, 101.56, 100.99, 97.96, 93.89, 91.70, 87.20, 86.20, 81.33, 80.93, 78.97, 78.88, 78.77, 78.28, 76.77, 76.58, 75.99, 75.25, 74.12, 73.73, 73.70, 73.37, 73.08, 72.77, 72.68, 72.02, 71.57, 71.20, 71.15, 67.67, 67.60, 66.96, 65.49, 63.81, 60.42, 59.03, 54.06, 49.52, 49.04, 46.75, 46.29, 41.60, 40.83, 39.91, 38.12, 36.23, 35.32,
34.89, 32.87, 32.60, 30.88, 30.57, 29.87, 27.53, 26.50, 25.78, 25.48, 24.44, 23.44, 20.37, 17.73, 17.29, 15.97, 12.30, 7.68, 7.58, 7.47, 7.37, 7.31, 7.27, 7.25, 7.10, 6.97, 6.91, 6.05, 5.79, 5.59, 5.51, 5.48, 5.41, 5.38, 5.14, 5.03, 4.57; FTIR (neat film) 2952.9, 2912.2, 2876.4, 2106.7, 1752.4, 1497.1, 1456.5, 1379.5, 1240.2, 1165.7, 1098.7, 1006.1, 913.3, 863.1, 824.5, 736.4, 697.5 cm-'; LRMS (ESI) m/z: Caled for C176H 2 7 9N 3 0 3 sSigNa 2 (M+2Na) 1646.39, found 1648.64.
N3 H Ph BnO OBn X 0 0 0 00 00 00
M Me O Le OBn OBn SMe Me ~ H 0 Of~p~
TESO TES 228 Me
'O E TESO 0001 NH 2 H Ph BnO OBn Io-M TESOTES 2298M 0 MeMe e O M-e0Bnn S
TESO OTETES Me Me
TESO
[003371 Amino saponin 229. Ayellow solution of diphenyldiselenide (45.8 mg, 0.147 mmol, 1.00 equiv) and hypophosphorous acid, 500in water (0.16 mL, 1.6 mmol, 11 equiv) in tetrahydrofuran (2.0 mL) was heated at 40°C for 40min until it turned colorless. The solution was then removed from the heat, diluted with benzene (2.0 mL) and deionized water (2.0 m). The lower phase of the resulting biphasic suspension was removed by syringe (2.4 mL), and the remaining organic layer was dried with sodium sulphate.
[003381 This freshly prepared solution of phenylselenol (1.7mL, ~0.14 mmol, 30 equiv) was added to asolution of azido saponin 228 (15.0 mg, 0.00461 mmol, 1.00 equiv) in triethylamine(5.0mL)andwas heated at 30 Cfor15 h.
[003391 A second solution of phenylselenol was prepared by heating diphenyldiselenide (53.7 mg, 0.172 mmol, 1.00 equiv) and hypophosphorous acid, 50% in water (0.19 mL, 1.8 mmol, 11 equiv) in tetrahydrofuran (2.0 mL) was heated at 40°C for 30min until it turned colorless. This solution of phenylselenol was then removed from the heat, diluted with benzene (2.0 mL) and deionized water (2.0 mL). The lower phase of the resulting biphasic suspension was removed by syringe (2.4 mL), and the remaining organic layer was dried with sodium sulphate.
[00340] The second solution of phenylselenol (1.5 mL, ~0.14 mmol, 30 equiv) was added to the reaction flask containing azido saponin 228, which was heated at 40 °C for 8 h. Additional phenylselenol solution (0.6 mL, ~0.06 mmol, 12 equiv) was added, and the reaction was stirred at 40 °C for an additional 2 h. The reaction mixture was concentrated and purified by silica gel chromatography (benzene to 3:2 benzene/ethyl acetate) to afford 228 (13.6 mg, 0.00422 mmol, 91% yield) as a white solid film. Rf= 0.24 (benzene/ethyl acetate 9:1); characteristic resonances from 1H NMR (500 MHz, CDC 3) 69.69 (s, 1H), 5.96 (s, 1H), 5.71 (s, 1H), 5.37 (d, J= 7.8, 1H), 5.31 (in, 1H), 5.28 (d, J= 12.4, 1H), 5.19 (d, J= 1.7, 1H), 5.09 (d, J= 12.4, 1H), 4.83 (d, J= 11.1, 1H), 4.82 (d, J= 7.5, 1H), 4.64 (t, J= 10.9, 2H), 4.59 (d, J= 1.8, 2H), 4.18 (d, J= 7.3, 1H), 3.25 (t, J= 8.4, 2H), 3.14 (in, 2H), 2.89 (dd, J= 14.5, 4.0, 1H), 1.42 (s, 3H), 1.33 (s, 3H), 1.29 (s, 3H), 1.24 (s, 3H), 1.16 (d, J= 6.2, 3H); FTIR (neat film) 2952.7, 2912.3, 2876.2, 1753.9, 1453.9, 1097.9, 1006.5, 862.44, 824.6, 737.1, 697.1, 668.4 cm-.
Me Me TBS,O Me,., TBS, me 00 0
HO N 0 OTBS H 243 TBSO OTBS NH 2 H Ph + BnO OBn 00 0 000- T Me O Me O n OB OBn BnO 02 Me Me Me T TO 0 Me O Me B O2n TESO NOTES CHOH 80 Me Me TESS Me E TS 229 Me Me TESO es Me tB Me
H1 N 5 OTBS BnOOCBn H11Ph - OB
Bn-~ M 0 '~4B TBO~0B TES0 0TS 0~0 Me l0Bf0 OTS0 H MH e MeS Me 'M TES 0\ 24 Me4
TESO
[003411 Fully protected compound 1-9 (248).A solution of ethyl chloroformate (0.45 jaL, 0.0047 mmol, 1.2 equiv) in tetrahydrofuran (10 jaL) was added to asolution of carboxylic acid 243 (5.0 mg, 0.0047 mmol, 1.2 equiv) and triethylamine (0.82 pL, 0.0059 mmol, 1.5 equiv) in tetrahydrofuran (1.0 mL) at 0 °C. After 2.5 h, amino saponin 229 (12.7 mg, 0.00394 mmol, 1.00 equiv) was added in a solution of tetrahydrofuran (3.0 mL). The reaction was warmed slowly to 10 °C over 12 h and stirred at 10 °C for an additional 2 h. The reaction was concentrated and purified by silica gel chromatography (hexane/ethyl acetate 4:1) to afford 248 (15.6 mg, 0.00365 mmol, 93% yield) as a clear film. Rf= 0.30 (hexane/ethyl acetate 4:1); characteristic resonances from H NMR (500 MHz, CDC 3) 69.69 (s, 1H), 6.31 (d, J= 9.0, 1H), 6.25 (d, J= 9.9, 1H), 5.96 (s, 1H), 5.72 (s, 1H), 5.37 (d, J= 7.3, 1H), 5.34 (in, 1H), 5.28 (d, J= 12.4, 1H), 5.18 (s, 1H), 5.09 (in, 1H), 4.85 (d, J= 11.1, 1H), 4.82 (d, J= 10.6, 1H), 4.78 (d, J 7.6, 1H), 4.37 (d, J= 10.4, 1H), 4.23 (in, 1H), 4.18 (d, J= 7.2, 1H), 3.25 (in, 2H), 3.13 (td, J= 11.2, 3.8, 2H), 2.90 (dd, J= 14.3, 2.8, 1H), 2.22 (t, J= 13.3, 1H), 1.44 (s, 3H), 1.34 (s, 3H), 1.29 (s, 3H), 1.20 (s, 3H), 1.11 (d, J= 6.1, 3H); 3 C NMR (126 MHz, CDC 3)6 170.74, 170.67, 168.50, 138.25, 138.12, 138.10, 138.01, 137.76, 136.91, 135.44, 129.75, 128.65, 128.62, 128.57, 128.54, 128.48, 128.46, 128.43, 128.40, 128.29, 127.97, 127.92, 127.84, 127.66, 127.62, 127.31, 109.73, 107.38, 107.02, 106.52, 91.72, 87.22, 86.49, 86.21, 84.14, 81.41, 79.17, 76.02, 74.21, 73.72, 73.54, 73.39, 73.12, 71.22, 71.17, 67.74, 66.98, 63.90, 63.85, 63.41, 54.07, 50.12, 48.85, 41.61, 39.88, 38.68, 36.80, 36.26, 32.85, 30.57, 29.85, 27.52, 26.57, 25.67, 25.38, 24.40, 18.56, 18.21, 18.13, 18.06, 18.02, 17.69, 17.14, 15.98, 15.04, 14.35, 12.30, 12.07, 7.70, 7.60, 7.39, 7.33, 7.31, 7.27, 7.11, 6.99, 6.93, 6.07, 5.81, 5.60, 5.53, 5.49, 5.42, 5.40, 5.04, 4.59, -3.85, -3.99, 4.37, -4.42, -4.45, -4.57, -4.68, -5.10, -5.17; FTIR (neat film) 2954.1, 2933.4, 2877.0, 2858.3, 1752.3, 1675.5, 1458.6, 1379.5, 1251.0, 1099.8, 836.6, 777.8, 737.0, 697.0, 668.5 cm- ;LRMS (ESI) m/z: Calcd for C2 2 8 H3 9 0N 2 04Sii 4 Na 2 (M+2Na) 2157.24, found 2157.27.
Me Me TBS , Me'. TBS,O M~e 00 0D0
HN N O OTBS H BnO OBn H Ph TO O B 0 00 0 0 ~0 T VO
0n- Me Me HOnon OBn Me 0 TESO TES0-- TES 0 248E M 0 Me Me MM
TTESOTES / MeS H O Me248 Me Me H OH HN N TESO MeMe OH OHM HOHO O HO HN N 0 OH
0 0 0 HOOHOH HO VOH
H0CMe Me H 0 OH 0 OH HO 2 Me H0~O HO 0 H 0 HM O M 0 OM HO .H0 HH H Me HO / OH 1-9 HO
[00342] Compound 1-9. Three solutions of fully protected 1-9 248 (3 x 2.0 mg, 0.0014 mmol, 1.0 equiv) in tetrahydrofuran (3 x 1.0 mL) and ethanol (3 x 1.0 mL) in three 10-mL round bottom flasks were charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (3 x 3.8 mg, 0.0054 mmol, 3.8 equiv). The three parallel reactions were stirred under hydrogen pressure (50 psi) for 24 h, and then the suspensions were each filtered through a 0.45 pm polyvinylidene fluoride filter disk, washed with methanol (5 mL), and concentrated in a 25 mL round bottom flask.
[003431 A pre-cooled (0 C) solution of trifluoroacetic acid (1.0 mL, TFA/water 3:1) was added to each flask. After vigorous stirring for 75 min, the three parallel reactions were concentrated in vacuo for 1 h at 0 °C to give white solid residue. This crude product was purified by RP-HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of 30+50% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The fraction containing the major peak (tR = 12.15 min) was collected and lyophilized to dryness to afford compound 1-9 (2.4 mg, 85% yield) as a white solid. Characteristic resonances from IH NMR (500 MHz, 7:3 D 20:CD 3CN) 6 9.36 (s, 1H), 5.34 (in, 1H), 5.31 (d, J= 7.9, 1H), 5.19 (d, J= 3.1, 1H), 5.17 (d, J= 1.5, 1H), 4.98 (d, J= 2.1, 1H), 4.67 (d, J= 7.8, 1H), 4.56 (d, J= 7.8, 1H), 4.51 (d, J= 7.7, 1H), 4.28 (d, J= 4.6, 1H), 4.06 (d, J= 10.1, 1H), 2.87 (dd, J= 14.6, 3.3, 1H), 2.43 (d, J= 6.6, 1H), 2.39 (dd, J= 7.5, 13.8, 1H), 2.33
(dd,J= 14.0,5.3, 1H), 1.29 (s,3H), 1.24(d,J=6.0,3H), 1.08 (s,3H),0.94(s,3H), 0.90(s,3H), 0.68 (s, 3H); LRMS (ESI) m/z: Caled for C9 2 H1 49 N 2 0 4 5 (M-H) 2001.94, found 2002.12.
0 O OTBS HO HNH 2 H Ph 247 TBSO-OTBS BnO OBn 00 + n0 MeMe Me H 00o 0 0 n 0 n n
TETBOO TESO OTES 0 CHO H TBSO MeOMeB TBSO O TES-O H Me TES' 0'Me Me MMe TESO 1 OTES BnOOOnMe P TESO //C 229 0 TBSO
TBSO0 OB BnO 0OB1 H11Ph
0M Me H SI T 0 Me n' H IB OL TE i TESN O OTES o 0 HO H H M.0 ,ESMe 0 'mL) Te Me r ws 0 Ms TESO 0 Me M \~/0TES249 TESO
[003441 Fully protected compound 1-10 (249). Asolution of ethyl choroformate (0.30 jaL, 0.0031 mmol, 2.0 equiv) in tetrahydrofuran (10 jaL) was added to asolution of carboxylic acid 247 (2.1 mg, 0.0030 mmol, 2.0 equiv) and triethylamine (0.45jaL, 0.0033 mmol, 2.1 equiv) in tetrahydrofiran (1.0 m)at0 'C. After 1.5 h, amino saponin 229 (5.0 mg, 0.0016 mmol, 1.0 equiv) was added in asolution of tetrahydrofuran (3.0 mL). The reaction was warmed slowly to 12 °C over 14 h, concentrated, and purified by silica gel chromatography (benzene to benzene/ethyl acetate 47:3) to afford 249 (5.4 mg, 89% yield) as a clear film. Rf = 0.64 (benzene/ethyl acetate 9:1); characteristic resonances from H NMR (500 MHz, CDCl 3) 6 9.69 (s, 1H), 5.96 (s, 1H), 5.71 (s, 1H), 5.62 (in, 1H), 5.39 (d, J=6.6, 1H), 5.28 (d, J= 12.4, 1H), 5.19 (s, 1H), 5.09 (d, J= 12.4, 1H), 4.85 (d, J= 11.2, 1H), 4.82 (d, J= 7.6, 1H), 4.79 (d, J= 10.6, 1H), 4.75 (d, J= 1.6, 1H), 4.64 (d, J= 11.2, 1H), 4.59 (d, J= 1.7, 2H), 4.18 (d, J= 7.3, 1H), 3.25 (in, 2H), 3.14 (dd, J= 19.6, 10.2, 2H), 2.88 (dd, J= 14.1, 3.5, 1H), 2.21 (t, J= 13.4, 1H), 2.14 (t, J= 7.4, 1H), 1.43 (s, 3H), 1.34 (s, 3H), 1.30 (s, 3H), 1.23 (s, 3H), 1.12 (d, J= 6.1, 3H); 'C NMR (126 MHz, CDCl 3) 6 138.24, 138.11, 137.64, 136.91, 135.44, 129.77, 128.64, 128.62, 128.57, 128.55, 128.51, 128.49, 128.45, 128.41, 128.29, 127.98, 127.93, 127.85, 127.62, 127.32, 109.64, 108.54, 107.38, 106.53, 91.72, 87.23, 84.34, 84.25, 81.46, 79.00, 78.89, 78.74,
78.67, 78.24, 74.25, 73.73, 73.65, 73.40, 73.11, 71.84, 71.57, 71.20, 67.87, 66.99, 63.87, 63.11, 54.03, 46.21, 41.71, 39.94, 37.06, 36.23, 32.86, 32.08, 30.60, 29.93, 29.88, 29.86, 29.81, 29.72, 29.67, 29.59, 29.46, 27.62, 26.53, 26.39, 26.08, 25.96, 25.90, 24.47, 22.86, 20.40, 18.53, 18.04, 18.00, 17.72, 17.32, 16.04, 14.27, 12.33, 7.70, 7.60, 7.39, 7.32, 7.29, 7.27, 7.12, 6.99, 6.93, 6.08, 5.81, 5.61, 5.53, 5.50, 5.42, 5.40, 5.08, 4.58, 1.19, -4.18, -4.38, -4.54, -4.64, -5.03, -5.16; FTIR (neat film) 2952.9, 2929.0, 2876.6, 2856.9, 1750.9, 1734.2, 1457.5, 1241.6, 1219.9, 1099.2, 1006.0, 836.7, 737.2, 697.5 cm- ; LRMS (ESI) m/z: Caled for C21OH 3 INO 42 Sii 2 Na 2 (M+2Na7*) 1970.62, found 1971.83.
TBSO
HN O OTBS TBSO Bn O OBn H Ph
MeMe Me H M ~OBn OTE 00 E'M Oe TTE OOMe TESO~
TESO NOTES 249 Me 'Me
TESO 0 HO
HN O/ OH HO OH HO 0000 HO OH Me Me HO H0 2 C0M Me Me HH OH OH HO 0 H O HO O Me H Me HO'Me HO Me HO OH 0 H H Me HO OH 1-10 HO
[003451 Compound 1-10. Fully protected 1-10 (249) (5.4 mg, 0.0014 mmol, 1.0 equiv) was equally divided into three 10-mL round bottom flasks and dissolved in tetrahydrofuran (3 x 1.0 mL) and ethanol (3 x 1.0 mL). The three parallel reactions were charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (3 x 3.2 mg, 0.0045 mmol, 3.3 equiv) and stirred under hydrogen pressure (50 psi) for 24.5 h. The three suspensions were combined and filtered through two 0.45 pm polyvinylidene fluoride filter disks, washed with methanol (5 mL), and concentrated in two 25-mL round bottom flasks.
[00346] A pre-cooled (0 °C) solution of trifluoroacetic acid (1.0 mL, TFA/water 3:1) was added to both flasks. After vigorous stirring for 60 min, the two parallel reactions were concentrated in vacuo for 2 h at 0 °C to afford white solid residue. This crude product was purified by RP-HPLC on an XBridge Prep BEH300C18 column (5 pm, 10 x250mm) using a linear gradient of 30-40% acetonitrile (0.05% TFA) in water (0.05% TFA) over 17 min at a flow rate of 5 mL/min. The fraction containing the major peak (tR = 15.5 min) was collected and lyophilized to dryness to afford compound 1-10 (2.0 mg, 78% yield) as an amorphous white solid. Characteristic resonances from IH NMR (500 MHz, 7:3 D 2 0:CD3CN) 6 9.36 (s, 4H), 5.34 (in, 1H), 5.32 (d, J= 7.9, 1H), 5.19 (d, J= 3.1, 1H), 5.17 (d, J= 1.4, 1H), 4.87 (d, J= 1.8, 1H), 4.67 (d, J= 7.7, 1H), 4.56 (d, J= 7.8, 1H), 4.52 (d, J= 7.9, 1H), 4.24 (d, J= 4.2, 1H), 4.06 (d, J = 10.1, 1H), 3.96 (d, J= 3.1, 1H), 2.89 (dd, J= 14.3, 3.5, 1H), 1.08 (s, 3H), 0.94 (s, 3H), 0.92 (s, 3H), 0.85 (s, 3H), 0.68 (s, 3H); LRMS (ESI) m/z: Calcd for C 86 H1 38 NO 4 2 (M-H) 1856.87, found 1857.03.
0
CI Me '10 NH 2 H Ph 250 BnO OBn + 000 00 0
Me H MeMe B BnT Me OBn MOBn OBn H 00 HT Me 0.M 0OMe TEOTESO 0 0 HH TES' Me Me TESO . NOTES 229 TESO 0
BnO OBn H Ph 0 0 X,0
0 Me Me HI BnO M OBn
[00347] Fully proteeH c I8 (1 LOBno TE 0 OTES 2 0m Hl OH TESTESI~~~0H O 9 e iMe Me0Me OMe M TS' e TS TESO CTE 251 Me
TESO
[003471 Fully protected compound 1-8 (251). Lauroyl chloride (6.6 jaL, 0.029 mmol, 12 equiv) was added to asolution of amine 229 (7.7 mg, 0.0024 mmol, 1.0 equiv) and tri-tert butylpyridine (52.5 mg, 0.212 mmol, 89 equiv) in dichloromethane (10 mL). After 16 h,the reaction was concentrated and purified by silica gel chromatography (benzene to benzene/ethyl acetate 4:1) to afford 251 (8.0 mg, 0.0023 mmol, 98% yield) as a clear film. Rf= 0.58 (benzene/ethyl acetate 9:1); characteristic resonances from H NMR (500 MHz, CDCl 3) 6 9.70 (s, 1H), 5.96 (s, 1H), 5.71 (s, 1H), 5.62 (in, 1H), 5.38 (d, J 6.9, 1H), 5.30 (in, 1H), 5.28 (d, J
12.4, 1H), 5.20 (d, J= 1.6, 1H), 5.09 (d, J= 12.4, 1H), 4.64 (d, J= 11.2, 1H), 4.59 (d, J= 1.8, 2H), 4.18 (d, J= 7.3, 1H), 3.25 (in, 2H), 3.14 (in, 2H), 2.88 (dd, J= 13.5, 3.0, 1H), 2.21 (t, J= 13.8, 1H), 2.15 (t, J= 7.1, 1H), 1.44 (s, 3H), 1.12 (d, J= 6.1, 3H); "C NMR (126 MHz, CDCl 3
) 6 138.25, 128.64, 128.61, 128.57, 128.55, 128.52, 128.48, 128.45, 128.41, 128.29, 127.98, 127.92, 127.85, 127.83, 127.62, 127.32, 112.24, 91.72, 74.25, 73.73, 73.64, 73.10, 63.86, 54.03, 46.16, 39.96, 36.22, 32.85, 32.08, 32.05, 31.02, 30.60, 30.43, 29.84, 29.76, 29.74, 29.61, 29.59, 29.53, 29.47, 29.39, 29.22, 27.61, 25.93, 25.51, 24.46, 22.84, 19.68, 17.73, 14.28, 7.69, 7.60, 7.39, 7.31, 7.27, 7.11, 6.99, 6.92, 6.07, 5.80, 5.60, 5.53, 5.49, 5.42, 5.39, 5.08, 4.58; FTIR (neat film) 2952.9, 2934.8, 2876.3, 1749.9, 1698.43, 1457.2, 1375.7, 1239.9, 1098.5, 1006.4, 697.5, 669.4 cm-1; LRMS (ESI) m/z: Caled for C 1 8 7H 301 NO 37 SigNa 2 (M+2Na) 1725.47, found
1723.82.
0
HN Me BnO OBn H Ph
0 00 00 00 0 x TET OMe Me H Me=nOBn TE TEO OTES Me251Me TES0- OTES 0 H CHHH TES, Me Me 0M TESO HN Me TESO\>ff:TES 251 Me 00 TESO Hii M
HO OH 0 HO 0 OH 0 00 Me Me H OHH OH Me ZHOC OH HO- -0HO1Sj 2-O H_,. H H Me H 'Me HO Me HO OH 0 H H Me HO OH SQS-0103 (207) HO
[00348] Compound 1-8. Three parallel solutions of fully protected 1-8 (251) (3 x 1.25 mg, 0.0011 mmol, 1.0 equiv) in tetrahydrofuran (3 x 1.0 mL) and ethanol (3 x 1.0 mL) in10-mL round bottom flasks were charged with 10% (dry basis) palladium on carbon, wet, Degussa type E101 NE/W (3 x 2.3 mg, 0.0054 mmol, 2.9 equiv). The three parallel reactions were stirred under hydrogen pressure (50 psi) for 26 h, and then the suspensions were combined and filtered through two 0.45 pm polyvinylidene fluoride filter disks, washed with methanol (5 mL), and concentrated in two 25-mL round bottom flasks.
[00349] A pre-cooled (0 C) solution of trifluoroacetic acid (1.0 mL, TFA/water 1:1) was added to both parallel reactions. After vigorous stirring for 35 min, the reactions were concentrated in vacuo at 0 °C to give white solid residue. This crude product was purified by RP HPLC on an XBridge Prep BEH300 C18 column (5 pm, 10 x 250 mm) using a linear gradient of +65% acetonitrile (0.05% TFA) in water (0.05% TFA) over 30 min at a flow rate of 5 mL/min. The product eluted as a broad peak (tR = 12.78 min), and this fraction was collected and lyophilized to dryness to afford compound 1-8 (1.3 mg, 0.00076 mmol, 69% yield) as an amorphous solid. Characteristic resonances from IH NMR (500 MHz, 1:1 D 20:CD 3CN) 6 9.36 (s, 3H), 5.31 (in, 1H), 5.28 (d, J= 7.7, 1H), 5.19 (s, 1H), 5.17 (d, J= 3.1, 1H), 4.66 (d, J= 7.8, 1H), 4.53 (d, J= 7.8, 1H), 4.48 (d, J= 7.9, 1H), 4.40 (d, J= 7.7, 1H), 4.05 (d, J= 10.1, 2H), 3.95 (d, J= 3.1, 1H), 2.87 (in, 2H), 1.08 (s, 3H), 0.93 (s, 3H), 0.90 (s, 3H), 0.67 (s, 3H); LRMS (ESI) m/z: Calcd for C8 1H13 0NO 3 7 (M-H) 1708.83, found 1709.37.
Example 4
Preclinical Evaluation of Synthetic QS-21 with GD3-KLH Conjugate Vaccine.
[00350] This example demonstrates the in vivo immunogenicity of certain compounds of the present invention. Using similar protocols, the immuno-potentiating properties of the synthetic adjuvants SQS-21-Api and SQS-21-Xyl were evaluated in mice (C57BL/6J, female, six weeks of age). Although our previous synthetic chemistry efforts had unambiguously verified the chemical structure of SQS-21-Api (Kim, Y.-J.; Wang, P.; Navarro-Villalobos, M.; Rohde, B. D.; Derryberry, J.; Gin, D. Y. J. Am. Chem. Soc. 2006, 128, 11906-11915) and SQS-21-Xyl (Deng, K.; Adams, M. M.; Damani, P.; Livingston, P. 0.; Ragupathi, G.; Gin, D. Y. Angew. Chem., Int. Ed. 2008, 47, 6395-6398) as being identical to that of the principal constituents within NQS-21 (Wang, P.; Kim, Y.-J.; Navarro-Villalobos, M.; Rohde, B. D.; Gin, D. Y. J. Am. Chem. Soc. 2005, 127, 3256-3257; Jacobsen, N. E.; Fairbrother, W. J.; Kensil, C. R.; Lim, A.; Wheeler, D. A.; Powell, M. F. Carbohydr. Res. 1996, 280, 1-14), this experiment was undertaken to evaluate the synthetic saponins to verify their biological activity given the variable heterogeneity in composition within naturally derived NQS-21 (Note: NQS-21 = naturally derived QS-21; SQS
21-Mix = synthetic QS-21; SQS-21-Api = synthetic QS-21-Api; SQS-21-Xyl= synthetic QS-21 Xyl; SQS-7 = synthetic QS-7). NQS-21 is isolated as a 65:35 mixture of its Apiose and Xylose isomeric forms, yet it is extremely difficult to separate these constituents from trace natural saponin impurities from the tree bark. As a result, it was necessary to explore whether there were any naturally derived trace saponin impurities that may function as the immuno-active constituent.
[003511 Groups of five mice were immunized with the melanoma antigen GD3 ganglioside conjugated to KLH (GD3-KLH) at a 10 pg antigen dose per vaccination. As the negative control, mice were vaccinated with the GD3-KLH antigen only. As a positive control, vaccinations were performed with naturally derived NQS-21 (derived by fractionating a mixture of saponins from Quillaja saponaria) at a dose of 20 pg, an amount known to induce measurable antibody responses with acceptable toxic effects in mice. Evaluation of the adjuvant activity of synthetic SQS-21 adjuvants at the same dose (20 pg) included a reconstituted mixture of SQS 21-Api and SQS-21-Xyl in a 65:35 mixture (SQS-21-Mix) to mimic typical isomeric ratios found within NQS-21. Similar evaluations were performed on each of the separate saponin isomers, SQS-21-Api and SQS-21-Xyl at 20 pg doses. Mice were immunized weekly for three weeks with the stated doses of specified adjuvants, and were bled 10 days after the third vaccination. Immunopotentiation was assessed by testing for the presence of antibody against GD3 and KLH by ELISA, and against a tumor cell-line SK-MEL-28, expressing GD3 antigen, by FACS.
Antibody Response (ELISA).
[00352] The antibody response after vaccination with GD3-KLH conjugate with or without adjuvant was determined with an ELISA assay using either GD3 ganglioside or KLH protein as target. Comparison of the different adjuvants at the same doses (10 and 20jg) of SQS-21, SQS-21-Api and SQS-21-Xyl were all equally effective at inducing and IgM antibody response against GD3 after 3 weekly vaccinations with antibody titers in each case significantly higher than the group with GD3-KLH alone. After the third vaccination, no IgG antibodies against GD3 were detected; however, after the fourth immunization IgM and IgG antibody titers were induced in most mice. Again, there were no significant differences between the various groups. The IgG antibody response against KLH was also strikingly elevated in all groups with no group demonstrating significantly higher or lower titers than the others. All were at least 20 fold higher than the GD3-KLH alone group. A graphical representation (Figure 2) of the antibody titers at 20 pg QS-adjuvant dose clearly illustrates that the SQS-21 adjuvants possess comparable adjuvant activity to that of NQS-21.
Cell Surface Reactivity by Flow Cytometry (FACS).
[003531 Immunopotentiation was also assessed by testing for the presence of antibody against a tumor cell-line SK-MEL-28) expressing GD3 antigen by FACS. Sera drawn 7 days after the 4th vaccination was tested for cell surface reactivity by flow cytometry using the SK Mel-28 (GD3 positive) cell line. The median FACS results are represented graphically at 20kg QS-adjuvant dose for direct comparison (Figure 3). Presera obtained from mice before immunization showed less than 10% positive cells and sera from mice vaccinated with all three synthetic adjuvants showed significant positive reactivity with SK-Mel-28. These data reinforce the comparable adjuvant activity of synthetic SQS-21 relative to that of NQS-21.
Toxicity.
[00354] As a measure of toxicity, loss of weight was monitored at 0 h, 24 h, 48 h and 72 h after each injection. The median weight loss for groups of five mice receiving SQS-21-Mix, SQS-21-Api or SQS-21-Xyl at the three different doses is demonstrated in Figure 4. As the negative control, vaccinations employing GD3-KLH only (no adjuvant) led to no appreciable weight loss after each injection. As the positive control, the presence of NQS-21 (20kg) elicited notable and expected weight loss after each injection. This pattern of weight loss over the 4-week duration is very similar to that of the other groups of mice vaccinated with SQS-21 synthetic adjuvants (mix, and separate isomers), again signaling a comparable biological profile of SQS-21 compared to that of NQS-21.
Example 5 Preclinical Evaluation of Selected Compounds of Formula I with GD3-KLH Conjugate Vaccine.
[00355] Synthetic efforts have resulted in the preparation of compounds of formula II, including compounds 1-8, 1-9, and 1-10. In these compounds, structural variations within the hydrolytically labile acyl chain of natural QS compounds take the form of significantly more stable amide-linked constructs, along with dramatically simplified linear alkyl chain variants.
[00356] Groups of five mice were vaccinated (3x @ 1-wk intervals, booster @ wk 7) with GD3-KLH antigen (10 fg) along with the adjuvant of interest (10 tg). As a negative control, one group was vaccinated with the antigen only, devoid of adjuvant. As positive controls, two groups were vaccinated with either natural NQS-21 or synthetic SQS-21-Mix, both of which were established to be potent immunoadjuvants in this assay (see Figure 2). Three compounds of formula II, as well as our recently synthesized QS-7-Api adjuvant, were evaluated in parallel for comparison (Figure 5).
[00357] Antibodies to GD3 in the blood samples were measured by ELISA (Figure 5A). These preliminary data reveal that these synthetic compounds are at least as active as NQS-21 in terms of immunopotentiating ability. These activities are reinforced by the strikingly high Ab titers (0.8-1.6 x 106, Figure 5B) against the protein antigen KLH. Detailed toxicity assessment of these novel adjuvants is currently underway.
[00358] This important collection of preliminary data (Figure 5) establishes the concepts that: (1) hydrolytically stable compounds of formula II are active immunopotentiators; and (2) that the present invention provides novel and potent adjuvant compounds with potencies that rival and exceed that of natural NQS-21.
[00359] The reference to any prior art in this specification is not, and should not be taken as an acknowledgement or any form of suggestion that the referenced prior art forms part of the common general knowledge in Australia.
[00360] In the specification the term "comprising" shall be understood to have a broad meaning similar to the term "including" and will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps. This definition also applies to variations on the term "comprising" such as "comprise" and "comprises."
160A

Claims (81)

CLAIMS What is claimed is:
1. A compound of formula I: 0 Y-Z Me Me H RY(O)C Me ' H
0 W H Me V "Me H H Me OR O RxO _ORx RxO I or a pharmaceutically acceptable salt thereof, wherein: is a single or double bond; RX'O ORx'
W is Me, -CHO, I , -CH2 OR, or -C(O)RY; V is hydrogen or -OR; Y is CH2 , -0-, -NR-, or -NH-; Z is hydrogen, a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, heterocyclyl, and heteroaryl; or Z comprises a carbohydrate;
each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates;
R is -OH, -OR, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO ~
Rx RxO
Rs is ORx or RxOMe each occurrence of R" is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R'are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1-12 heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; with the provisos that a carbohydrate domain directly attached to Y is not fucosyl; that Y-Z is not -OH or -OMe if all R groups are hydrogen or if at least four R' groups are methyl; and that the compound is not one of the following:
0 OH Me Me H BnO 2C Me H
B3_0 H-HO H Me /O"me BnO O~n 0H H Et3 Si Me BnO >/SiEt 3 VC 0 OH BnO M4 Bn2CMe Me HH BnO 2 Me HHM 0n CHO Me HO "Me BnO O~n 0 H H Me BnO*YOH 0Ol RnO Me Me H BnO2 MeH BnO--, 0EtASi L on CHO Hi Me 0O"'Me BnO O~n H0 H Et 3Si /Me
Bn., 4 OSiEt 3 0 OalyI BnO M Me H BnO 2C Me MHH Bn Bn :_ 0O~n0 Me H Lj --HOMe .L 0, BO 0 HOCHO H Me BnO O H H Mely
BnO Me Me H H02 C Me H BnO 0 H0. BnO 0~ HCHO H Me HO"'Me B Own0 H Me Bno c H0 OaIlyI BnO M Me H MeO 2 C Me MeHH
BnO 0 CHO Me HO "Me BnO O~n 0 H H Me RnO ~4O~z RnO
0 OMe Me Me H MeO Me 0AcO L H BnO O O CHOH Me HO 'Me BnO OBn j H H Me BnO OBZ BnO 0 OMe 0 Me Me H MeO Me H 0 AcO O H BzO O O HCHOH Me HO 'Me BzO OBn 0 H H Me BnO OBz BnO
2. The compound of claim 1, wherein Z is a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl,
heterocyclyl, and heteroaryl; or a carbohydrate domain having the structure:
- RIO 0 R3 Rio 0R 1 3
R2 or OR'
wherein:
each occurrence of R 1 is Rx or a carbohydrate domain having the structure:
R' Rd
R
- -d
wherein:
each occurrence of a, b, and c is independently 0, 1, or 2;
d is an integer from 1-5, wherein each d bracketed structure may be the same or
different; with the proviso that the d bracketed structure represents a furanose or
pyranose moiety, and the sum of b and c is 1 or 2;
R° is hydrogen, an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1_10 aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R°, and Rd is independently hydrogen, halogen, OH, OR, OR, NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R2 is hydrogen, halogen, OH, OR, OC(O)R4 , OC(O)OR4 , OC(O)NHR4 , OC(O)NRR4
, OC(O)SR 4, NHC(O)R 4, NRC(O)R 4, NHC(O)OR 4 , NHC(O)NHR 4, NHC(O)NRR 4 ,N(R 4) 2
, NHR 4, NRR 4, N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic, C1 6_ heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R3 is hydrogen, halogen, CH 2OR 1, or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; with the proviso that R 3 is not methyl;
X OR'
OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein:
T is a covalent bond or a bivalent C- 26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR , -SR, -NR2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
3. The compound according to claim 2, wherein Z is a carbohydrate domain having the structure:
R2
4. The compound according to claim 3, wherein each occurrence of R' is independently hydrogen or a carbohydrate domain having the structure:
R' Rd
RGR
b R Ra
5. The compound according to claim 4, wherein each occurrence of R' is independently selected from the group consisting of:
RXORxO ORx RxO ORx
O ORx OR0ORX O O 5 5 RxO R RXO R 0 0 OR OR R RxO ORX ROO ORx
, 4RW O4 ORx OR OR RXORxO RORx RO ORx 4 'I-0R oz- Rx
Rx 5 x I - OR RI x 0 OR .
ORx ,or | ORx
wherein R' and R6 are independently hydrogen, an optionally substituted group selected from the group consisting of acyl, C1 _ 10 aliphatic, C1 _6 heteroaliphatic, 6-10-membered aryl, arylalkyl,
5-10-membered heteroaryl having 1-4 heteroatoms independently selected from the group
consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2
heteroatoms independently selected from the group consisting of nitrogen, oxygen, and
sulfur.
6. The compound according to claim 3, wherein R2 is N 3 , OC(O)R4 , OC(O)NHR4 ,
NHC(O)R 4, NRC(O)R 4, NHC(O)OR 4 , or NHC(O)NHR 4 .
7. The compound according to claim 3, wherein R2 is N 3 .
8. The compound according to claim 3, wherein R2 is OC(O)R 4 .
9. The compound according to claim 3, wherein R 2 is NHC(O)R 4 .
10. The compound according to claim 6, 7, 8, or 9 wherein R 4 is methyl.
11. The compound according to claim 6, 7, 8, or 9 wherein R4 is R R OR
OR 0 OR Me Me Me Me
H {_OH
12. The compound according to claim 11, wherein R is hydrogen and RI is OH
13. The compound according to claim 9, wherein R 4 is -T-Rz
14. The compound according to claim 13, wherein T is a covalent bond or a bivalent C1-26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain comprising one or two units of -O-.
15. The compound according to claim 14, wherein -T- is selected from
16. The compound according to claim 13, wherein Rz is hydrogen, halogen, -OR, OR', -OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1 6 aliphatic, 6 -membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from nitrogen, oxygen or sulfur.
17. The compound according to claim 16, wherein Rz is selected from hydrogen, methyl, or
H OH
OH
18. The compound according to claim 5, wherein each of R , R5, and R is independently an optionally substituted C1 _ 10 aliphatic group.
19. The compound according to claim 18, wherein each of R5 and R6 is independently methyl.
20. The compound according to claim 18, wherein each of R3, R5 , and R6 is independently CH2 OR.
21. The compound according to claim 18, wherein one or more of R , R5, and R is CH 2OH.
22. The compound according to claim 18, wherein each of R , R , and R6 is CH 2OH.
23. The compound according to any one of claims 1-22, wherein each occurrence of R is independently an oxygen protecting group selected from the group consisting of methyl ethers, ethyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates.
24. The compound according to claim 23, wherein each R is independently benzyl or -SiR 3
25. The compound according to claim 23, wherein two R attached to adjacent carbon atoms . on a saccharide ring are taken together to form a cyclic acetal or ketal protecting group.
26. The compound according to any one of claims 1-22, wherein all R are hydrogen.
27. The compound according to any one of claims 1-22, wherein RY is a carboxyl protecting group.
28. The compound according to claim 27, wherein RY is benzyl.
29. The compound according to any one of claims 1-22, wherein RY is hydrogen.
RXO RxO
30. The compound according to claim 1, wherein Rs is ORX
RxO RxO
31. The compound according to claim 1, wherein Rsis RXOMe
32. The compound according to any one of claims 1-22, wherein W is -CHO.
33. The compound according to any one of claims 1-22, wherein V is -OH.
34. The compound according to any one of claims 1-22, wherein V is hydrogen.
35. The compound according to any one of claims 1-22, wherein Y is -0-.
36. The compound according to claim 1, wherein the compound is of formula II: RxO OR' O RxO R5 ORX 0 0 OR'
007 Me Me H RY(O)C Me ' R1 4 W H H VH'Me HN R4 RO O e "Me O)x 0 H H Me 0 Rx0,,, Ox
RxO
37. A compound of formula II-b:
3 Me Me H RR RY(O)C Me ' R1 4 Rx07 H WMeL .r HN R
H H Me Me 0 0 XORX RxO ORX RxO
II-b or a pharmaceutically acceptable salt thereof, wherein: is a single or double bond; RX'O ORx'
W is Me, -CHO, , -CH 2 OR, or -C(O)R; V is hydrogen or -OR; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; Ry is -OH, -OR, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO ~
RxO RxO
Rs is ORx or RxOMe
each occurrence of R" is independently an optionally substituted group selected from 6-10 membered aryl, C 1_6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms independently
selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R'are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1-12 heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R' is R or a carbohydrate domain having the structure:
R' Rd
a c
Rab Ra - -d
wherein: each occurrence of a, b, and c is independently 0, 1, or 2; d is an integer from 1-5, wherein each d bracketed structure may be the same or different; with the proviso that the d bracketed structure represents a furanose or pyranose moiety, and the sum of b and c is 1 or 2; R° is hydrogen, an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, sityl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1_10 aliphatic, C1_o heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R', and Rd is independently hydrogen, halogen, OH, OR, OR, NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R3 is hydrogen, halogen, CH 2OR', or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; with the proviso that R 3 is not methyl;
X OR 1
OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C 1-26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR', -SR, -NR2, -NC(O)OR, or an
optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur.
38. A compound selected from: HO HO.-OOH O OH
HO MeO
O OH H OH O~~~oH MeOH 00 eM~M ~~ e Me M I HOOH
HOHOHHM HO HOOHMeM
HO
HO OH
HO Me O0 OOH OH 0 HH OH 0 OH 00 o HO-'- 0 OH 0 H He OH7MeM HM MeeHO MeO Me 0 OH HHO H Me Me
HO
HO HOO-OH O OH
HO Me 0 0 OH OH 0 0- 0 OH HX22,FOH Me M O H He H H OH H HeN H0 2 me
HO
HO Me-Iet Me H6TH 4OH
OH OH 0/ H H Me 'me Me HO Me OO OH O 0 OH H 0OOH
HHMe HOO'Me 0 Me 0 OHO HO COH Me Me
HO
HO 0 OH
~O OH
HO Me OH OH 00 -_ o OH
H 2CO Me Me H HN Me MeO MeN H M H HO CHO MeHOMe 0 OHH OH H Me H e HOO HO OH H HO HO~~HO O
,X HO Me O0O HoOH HO
HOO HO Me OH OH
00 OH Me Me H0 2C Me H 0 HN Me HO0 LO000 0 HOI0CH IMe HO "Me I0 OH OH 0 H H Me OHO HO OH HO
Me Me O HO 1H 0 L-OH
HO Me 0O OH 0 0 OH me Me H H0 2C Me HN Me 0 0 L OH HO 0H 0 I 1 OH HOICHOHMe HO 'Me 0 0OH OH 0 H H Me
HO
HO
OH OH O 0 HO, MeMeOOH HO 0Me me Me H Me HNM HO ~OA00 0 L OH HCH HO 'Me 0 OH O.H 0 0 HH Me HO OH HO
0 0
HN" AOH OH HO OH
HO M H Me HH O H MH HOMe HO ?~ HO H HO Me Me HOHO
HO OH
HO O 0H H
0
HN lk0 Me O IOHO OH 0 Me Me H OH-7/t OH H Me02O ,oHO 0H O\ HO`S10 0 0 HO Me H DCHO CH Me HO Me HO OH 0 H H me HO V H HO
Me, Me.H Me Me H Me O
HN O i MeHMH H
HHO OMe e OOH OH
HO 0 O H HOHH
HOO
Me)X: "'M H HO OH 0 HHO e Me H M HN OO >Me
,2 Me e HOO
HHOOH HO OMe 00
HO H OH M HO
Ho Me L0"vHOUl77 H H 00 -1 . H 0 .1, HH HOH 0 CH MeH'M HNH H O H Mee
HO Me Me H OH
HO H HO
HN 10e OH HO OH
0Me Me H H HO Me H OH HO O0 _I L HO_
HO OH
HO
Me Me
HN N OOH
aH HOQHOH HO O HO O Me MeH
0 HO HO Me HO H OH O HO O O4
H HlOO HC HO- -4 OH0L H Me HOHO 0 CO HHeOHO "'Me H"M HNi OH OHH H OHH O HO O
HOMeH?1
HO 0
HN K1? OH OOH OH
0Me Me H HO Me HO %H _00 HHO O H H Me HO .-Me HOH 0 . CH H Me HO OH HO
HO
HN O OH O OH OH
0 Me Me H OH HO Me H0 HO HO HO 0 HO H Me HO "Me OH H0O~H H H Me HO HOC HO H OHH
HO
HO 0 ,,U 0 NOH
_H ~ OH OH 0 Me Me H IOH HO Me
OHO'n HO Me HOHO 0 HO H Me HO"'Me H0O~H 0/ H Me
HO
HO
HNY?"4 OO
Me Me4H HH OH Me H Ov HO L HO Me &HOCC Me HO"'Me Me N3 H Ph 0 0 0 ~ O-0
0Me M4e H0~ BnO Me H 0Bn07 0 BOBn HH 01 'L
TESO 0 T.S 0 L. CHO .H Me .0"`me O e TS E O0-TES 0 H H TES' Me M TES0 /ob/ Me M
TESO/ N3 BnO~Bn M 0 OBn
0Me Me H O~n H ? O 01 O~-OBn TESO TESO1 &0 OMe TESO- -0OTES 0 . M 0".,Me0M TEITESO OTS0HH CHO MTES'Me e MeMe TESO OTES TESO
N3
0~ BnO C BnO-4' Me 0
0 TESO~~ C ~ TS~M 0TE TES e MeM BnO~M MeH TE TE \Z: OES HO MeE'M
TESO /
HO
O 4 CO OH
0 M Me HOH HO Me MeH HO OH 00 H O1 HO OH x.~0 HO Me HO oi HO~ Me HO"'Me HO ?OH OH Me HOV
0 OH Me Me H BnO 2 C Me H Et SiO 0iOEt 3 SiO 9\0 Et3 SiO O\ CHO Me 0 "Me Et3 SiO Et 3 SiO 0 H H Et 3 Si'Me Et3SiO. OSiEt 3 Et 3SiO
O OH Me Me H BnO 2 C MeIH
Et3 SiO ot CHO i Me /O"Me 0Et 3SiO 0H H Et 3Si Me Et 3SiO Et3SiO Oi~
Et3 SiOi Et 3SiO
O OH Me Me H HO 2C MeH
Et3 SiO 0 CHO Me ,0 "me 0 Et3 SiO 0 H H Et3 Si Me ET 3S Et3SiO 4 OSiEt 3 o Et 3SiOi Et3 SiO o
0 OH Me Me H HO 2 C Me H Et SiOX 0 Et 3 SiOf\~0L Et 3SiO 0 CHO l Me 0 "Me Et 3SiO Et 3SiO 0 H H Et 3si' Me Et3SiO.O OSiEt 3 Et 3SiO
39. A pharmaceutical composition comprising a compound according to any one of claims 1
through 38 and a pharmaceutically acceptable excipient.
40. The pharmaceutical composition of claim 39 further comprising an immunologically
effective amount of an antigen.
41. A vaccine comprising:
a) one or more bacterial, viral, protozoal, or tumor-associated antigens, and
b) one or more compounds of claims 1 through 38.
42. The vaccine of claim 41, wherein said one or more antigens are bacterial antigens.
43. The vaccine of claim 40, wherein said bacterial antigens are antigens associated with a
bacterium selected from the group consisting of Helicobacterpylori,Chlamydiapneumoniae,
Chlamydia trachomatis, Ureaplasmaurealyticum, Mycoplasmapneumoniae, Staphylococcus
spp., Staphylococcus aureus, Streptococcus spp., Streptococcus pyogenes, Streptococcus
pneumoniae, Streptococcus viridans, Enterococcusfaecalis,Neisseriameningitidis, Neisseria
gonorrhoeae, Bacillus anthracis, Salmonella spp., Salmonella typhi, Vibrio cholera, Pasteurella
pestis, Pseudomonas aeruginosa, Campylobacter spp., Campylobacterjejuni,Clostridium spp., Clostridium difficile, Mycobacterium spp., Mycobacterium tuberculosis, Treponema spp., Borrelia spp., Borreliaburgdorferi, Leptospria spp., Hemophilus ducreyi, Corynebacterium
diphtheria, Bordetellapertussis,Bordetellaparapertussis,Bordetella bronchiseptica, hemophilus influenza, Escherichiacoli, Shigella spp., Erlichia spp., Rickettsia spp. and combinations thereof.
44. The vaccine of claim 41, wherein said one or more antigens are viral-associated antigens.
45. The vaccine of claim 44, wherein said viral-associated antigens are antigens associated with a virus selected from the group consisting of influenza viruses, parainfluenza viruses, mumps virus, adenoviruses, respiratory syncytial virus, Epstein-Barr virus, rhinoviruses, polioviruses, coxsackieviruses, echo viruses, rubeola virus, rubella virus, varicell-zoster virus, herpes viruses, herpes simplex virus, parvoviruses, cytomegalovirus, hepatitis viruses, human papillomavirus, alphaviruses, flaviviruses, bunyaviruses, rabies virus, arenaviruses, filoviruses, HIV 1, HIV 2, HTLV-1, HTLV-II, FeLV, bovine LV, FeIV, canine distemper virus, canine contagious hepatitis virus, feline calicivirus, feline rhinotracheitis virus, TGE virus, foot and mouth disease virus, and combinations thereof.
46. The vaccine of claim 41, wherein said one or more antigens are tumor-associated antigens are antigens selected from the group consisting of killed tumor cells and lysates thereof, MAGE-1, MAGE-3 and peptide fragments thereof; human chorionic gonadotropin and peptide fragments thereof; carcinoembryonic antigen and peptide fragments thereof, alpha fetoprotein and peptide fragments thereof; pancreatic oncofetal antigen and peptide fragments thereof; MUC-1 and peptide fragments thereof, CA 125, CA 15-3, CA 19-9, CA 549, CA 195 and peptide fragments thereof; prostate-specific antigens and peptide fragments thereof; prostate specific membrane antigen and peptide fragments thereof; squamous cell carcinoma antigen and peptide fragments thereof; ovarian cancer antigen and peptide fragments thereof; pancreas cancer associated antigen and peptide fragments thereof; Herl/neu and peptide fragments thereof; gp 100 and peptide fragments thereof; mutant K-ras proteins and peptide fragments thereof; mutant p53 and peptide fragments thereof; truncated epidermal growth factor receptor, chimeric protein
p210BCR-ABL, KH-1, N3, GM1, GM2, Gb3, GD2, GD3, Globo-H, STn, Tn, Lewis', Lewisy, TF; and mixtures thereof.
47. The vaccine of claim 41, wherein said one or more antigens are non-covalently associated with a pharmaceutically acceptable excipient.
48. The vaccine of claim 41, wherein said one or more antigens are conjugated covalently to a pharmaceutically acceptable excipient.
49. A method of potentiating an immune response to an antigen, comprising administering to a subject a vaccine of claim 41 in an effective amount to potentiate the immune response of said subject to said antigen.
50. A method of vaccinating a subject, comprising administering a vaccine of claim 41 to said subject.
51. The method of claim 49 or 50, wherein the subject is a human.
52. The method of claim 50, wherein the vaccine is administered orally.
53. The method of claim 50, wherein the vaccine is administered intramuscularly.
54. The method of claim 50, wherein the vaccine is administered subcutaneously.
55. The method of claim 50, wherein the amount of compound administered is 10-1000 pg.
56. The method of claim 50, wherein the amount of compound administered is 500-1000 pg.
57. The method of claim 50, wherein the amount of compound administered is 100-500 pg.
58. The method of claim 50, wherein the amount of compound administered is 50-250 pg.
59. The method of claim 50, wherein the amount of compound administered is 50-500 pg.
60. The method of claim 50, wherein the amount of compound administered is 250-500 pg.
61. A kit comprising a pharmaceutical composition of claim 39 or 40 and instructions for administration.
62. A kit of claim 61 further comprising prescribing information.
63. A kit of claim 61 further comprising a device for administration.
64. A kit of claim 61 wherein the kit comprises multiple doses of a pharmaceutical composition.
65. A method comprising the steps of: (a) providing a mixture of prosapogenins of formula IV-a:
0 Y' Me Me H RY(O)C Me H
R W H Me V "'Me OH H H Me
HO +OH HO IV-a wherein: -- is a single or double bond; Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NHR, NH 2 , SR, or NROR; RX'O ORX' W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR;
RY is -OH, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
HO-~
HO HO R, is OH or HOMe each occurrence of Rx is independently an optionally substituted group selected from 6-10 membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1 -12 heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; (b) treating said compound of formula IV-a under suitable conditions to form a mixture of prosapogenins of formula IV: 0 Y' Me Me H RY(O)C Me H RxO 00 RW H Me LO V "Me OR O H H Me
RxO IV wherein each of , RY, Y', V, and W is as defined for compounds of formula IV-a, and each
occurrence of R' is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates;
RxO
RXO RxO
Rs is ORx or RxOMe
with the proviso that at least one Rx group is not hydrogen;
and (c) obtaining said compound IV by suitable physical means.
66. The method according to claim 65, wherein the mixture of prosapogenins comprises
compounds A and B: 0 OH 0 OH Me Me H Me Me H HO 2C Me HO 2C Me 0 Me HO HMeC M H OH H OH Me 0 OH O H H Me HO HO HO H eHOM VHOHOW V HO HOMeHO
A B.
67. The method according to claim 66, wherein compound of formula IV-a is compound A.
68. The method according to claim 66, wherein the compound of formula IV is: O OH Me Me H BnO 2 C MeH BO-0 BnO- L Bno_ -1ICH I Me BnO E;Me BnO Ets-O O HCH H Me Bno CBn
EtsSBnO O_ O O OH Me M e Hf HO 2 C M EtSiO-\ 0 Et 3Si 0UO' Et3 SiO ~ CHOI H Me ,A"Me Et 3Si 0 M'e Et 3SiO-(. Et3Si 0 SEt 3 Et3 SOMe EtSiO O
0 OH Me Me H BnO 2C Me H Et SiO 3 0 LH Et 3SiO CHO H Me O "Me 0 Et 3SiO 0 H H Et 3Si Me Et 3 SiO;Et 3Si OSiEt3 EtSOMe - C Et 3 SiOe Et 3SiO
0 OH Me Me H BnO 2C Me H Et0 CH H Me 0 'Me Et 3SiO EtSiO 0 H E Me Et3 SiO Et 3SiO or0 OSiEt 3 Et 3SiO HOC Me"M or
HCHOH H Et3Si OM OH Me Me H HO2C Me
Et3SSo CH H Me me Et3SiO Et3SiO 0 H e31 0"M Et3SiO OSiEt3 Et3SiO
69. The method according to claim 65, wherein each R is independently trialkylsilyl or arylalkyl.
70. The method according to claim 69, wherein R is -SiEt 3 or benzyl.
71. The method according to claim 65, wherein W is CHO.
72. The method according to claim 65, wherein V is OH for a compound of formula IV-a and OR for a compound of formula IV.
73. The method according to claim 65, wherein the suitable physical means is chromatography.
74. A method comprising the steps of: (a) providing a compound of formula IV:
0 Y' Me Me H RY(O)C Me H RxO 0 L Ro W H Me V 'Me 0 x: Me H H RXR OX
IV wherein:
-- is a single or double bond;
Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NHR, NH 2 , SR, or NROR; RO ORX'
W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; Ry is -OH, or a carboxyl protecting group selected from the group consisting of ester,
amides, and hydrazides;
RxO
RX RxO
Rs is ORX or RxOMe
each occurrence of Rx is independently an optionally substituted group selected from 6-10
membered aryl, C1 _6 aliphatic, or C 16_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or:
two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2
heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
each occurrence of R is independently hydrogen, an optionally substituted group selected
from acyl, arylalkyl, 6-10-membered aryl, C1 -12 aliphatic, or C1 -12 heteroaliphatic having
1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen,
and sulfur; each occurrence of R is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates; with the provisos that at least one R group is not hydrogen; that Y' is not -OH or -OMe if all R groups are hydrogen or if at least four R groups are methyl; and that a compound of formula IV is not: O OH Me Me H BnO 2 C Me ' H BnO BnO Et 3 SiOL0-144 0 CHO H Me O "Me BnO OBn 0 H H Et3 si Me BnO OSiEt3 BnO or
O OH Me Me H BnO 2C Me H BnO B 0 H(~& HO CH H Me HO "Me BnO OBn 0H H Me BnO OH BnO (b) treating said compound of formula IV under suitable conditions with a compound of formula V: LG-Z V wherein: Z is a cyclic or acyclic, optionally substituted moiety selected from the group consisting of acyl, aliphatic, heteroaliphatic, aryl, arylalkyl, and heteroaryl; or Z comprises a carbohydrate domain having the structure:
R-7 R R1 0 0 R3 0R 1 R2 or OR'
wherein: each occurrence of R 1 is R' or a carbohydrate domain having the structure:
R' Rd
a c
- Rab Ra
wherein:
each occurrence of a, b, and c is independently 0, 1, or 2;
d is an integer from 1-5, wherein each d bracketed structure may be the same or different;
with the proviso that the d bracketed structure represents a furanose or pyranose
moiety, and the sum of b and c is 1 or 2;
R° is hydrogen, an oxygen protecting group selected from the group consisting of alkyl
ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates;
or an optionally substituted moiety selected from the group consisting of acyl, C1 10
aliphatic, C1-6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered
heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected
from the group consisting of nitrogen, oxygen, and sulfur;
each occurrence of Ra, Rb, R°, and Rd is independently hydrogen, halogen, OH, OR, OR,
NR 2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic,
C 1_ 6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7
membered heterocyclyl having 1-2 heteroatoms independently selected from the
group consisting of nitrogen, oxygen, and sulfur; 4 R 2 is hydrogen, halogen, OH, OR, OC(O)R4, OC(O)OR4 , OC(O)NHR4 , OC(O)NRR 4 ,
OC(O)SR 4, NHC(O)R 4 , NRC(O)R 4, NHC(O)OR4 , NHC(O)NHR 4 ,NHC(O)NRR4 ,
N(R 4) 2 , NHR 4, NRR 4 , N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic,
C 1_ 6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and
sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from
the group consisting of nitrogen, oxygen, and sulfur;
R3 is hydrogen, halogen, CH 2OR', or an optionally substituted group selected from the group consisting of acyl, C1_1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
x OR1 OR 0 OR Me Me 4 R is Me Me ,wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C 1-26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR , -SR, -NR2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is as defined for compounds of formula IV; and LG is a suitable leaving group selected from the group consisting of halogen, alkoxy, sulphonyloxy, optionally substituted alkylsulphonyl, optionally substituted alkenylsulfonyl, optionally substituted arylsulfonyl, and diazonium moieties; or a suitable glycoside donor leaving group; to give a compound of formula I:
0 Y-Z Me Me H RY(O)C Me H
Rs W H Me VmMe OxH H Me RxO OR
RXO
wherein each of -,R, RY, Rs, Z, V, and W is as defined for compounds of formula IV or V, and Y is CH 2 , -0-, -NR-, or -NH-.
75. The method according to claim 74, wherein the compound of formula V is a compound
of formula VI:
LG1 R1 0 R3
R2
VI wherein:
each occurrence of R' is Rx or a carbohydrate domain having the structure:
R' Rd
R
- -d
wherein:
each occurrence of a, b, and c is independently 0, 1, or 2;
d is an integer from 1-5, wherein each d bracketed structure may be the same or
different; with the proviso that the d bracketed structure represents a furanose or
pyranose moiety, and the sum of b and c is 1 or 2;
R° is hydrogen, an oxygen protecting group selected from the group consisting of
alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, carbamates, and carbonates; or an optionally substituted moiety selected from the group consisting of acyl, C1_10 aliphatic,C1_6heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10 membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Ra, Rb, R°, and Rd is independently hydrogen, halogen, OH, OR, OR, NR2 , NHCOR, or an optionally substituted group selected from acyl, C1 _ 10 aliphatic,C1-6heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R2 is hydrogen, halogen, OH, OR, OC(O)R4, OC(O)OR 4 , OC(O)NHR 4, OC(O)NRR4, OC(O)SR 4,NHC(O)R 4 , NRC(O)R 4, NHC(O)OR4 , NHC(O)NHR 4 ,NHC(O)NRR4
, N(R 4) 2 , NHR 4, NRR 4 , N 3 , or an optionally substituted group selected from C1 _ 10 aliphatic, C 1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R 3 is hydrogen, halogen, CH 2OR', or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic,C1_6heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
X OR1 OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalentC1 -26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and
Rz is hydrogen, halogen, -OR, -OR, -OR', -SR, -NR 2, -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1_6 aliphatic, or C1_6 heteroaliphatic having 1
2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; and LG 1 is a glycoside donor leaving group.
76. The method according to claim 75, wherein the compound is of formulae VI-1, VI-2, VI 3, VI-4, VI-5, VI-6, VI-7, or VI-8: RxO ORX RxORxO ORX R ORX O ORX O O RxO R5 xRxO R5
ORx 1 R ORx SRx
RxO OR2O R0O RO ORx xO ORX
VI-i VI-2
RxoRxO.. 0 .0Rx RxO R 5 0 Ox00 ORx 0 ORx
3G ORx 5 0x RxO R 0Rx 0 0 R 0 O~x 0xR
RxO 2 RxO ORx
VI-3 VI-4
RxO
0RxO ORx 4ORX 3~QORx RxO R 5 O 0 00 0Rx RO RR5 LG11 r '0 ORx
0 70
0 OO~x LG1 O 4 LG1{O 5 HX5 R 0x R RxO 2
VI-7 VI
wherein:~ Rx 24- 4O~ 4 Rihdoe~hlgnOOOR 4 O()NRCONR 0C0 4 ,CO)NR 4 ,HCNR 4 4 ,CO)R OC(O)R 4 ,RC5 R 4 NC()R
N(R 4) 2 , NHR 4, NRR 4, N 3 , or an optionally substituted group selected from C1_10 aliphatic, C 1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5-10-membered heteroaryl having 1 4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur, 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; R3 is hydrogen, halogen, CH 2OR1, or an optionally substituted group selected from the group consisting of acyl, C 1 1o aliphatic, C1_6 heteroaliphatic, 6-10-membered aryl, arylalkyl, 5 10-membered heteroaryl having 1-4 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; 4-7-membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur;
X OR1
OR 0 OR Me Me R4 is Me Me , wherein X is -0- or -NR-; or T-Rz, wherein: T is a covalent bond or a bivalent C1 -26 saturated or unsaturated, straight or branched, aliphatic or heteroaliphatic chain; and Rz is hydrogen, halogen, -OR, -OR, -OR', -SR, -NR2 , -NC(O)OR, or an optionally substituted group selected from acyl, arylalkyl, heteroarylalkyl, C1_6 aliphatic, 6-10-membered aryl, 5-10-membered heteroaryl having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, 4-7 membered heterocyclyl having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen and sulfur; or two R4 on the same nitrogen atom are taken with the nitrogen to form a 4-7 membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group selected from the group consisting of alkyl ethers, benzyl ethers, silyl ethers, acetals, ketals, esters, and carbonates;
Ry is -OH, -OR, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1 -12 heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R on the same nitrogen atom are taken with the nitrogen to form a 4-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; and LG' is a glycoside donor leaving group.
77. The method according to claim 75, wherein the compound of formula VI is selected from: NH
C13C 0
NH TBSO 0 Me C13C 0 OAc ClC O M TBSO M BnO-'TZ TBSO 0 Me _70o 0 TBS0I TBSOOMEcMe
N3 HN 3 O OBn H BnOIOBn
OC(NH)CCl 3 O OC(NH)CCl 3 OBn O Bn OBnOBn O BnO
O e O e
Me Me , MeMe
Me Me 0 0 Me TBS,0 Me 0 TBS, o O O OTBS oBO Me H h TBSVOTBS
OC(NH)CCl 3 OBn 0O OBn OS 00 00 Me Me Me Me
0 0 0 OTBS 0Me O Me OnTBS OLTBS OC(NH)CCI 3 Bn-pOBn 0BnOO~
Me Me
H Ph
BnO 000
0 MY0 Me 0 OBn
OBn 0 OAc BnO
or M e
78. The method according to claim 74, wherein the compound of formulaIV is of formula IV-b:
0 OH Me Me H RY(O)C Me H RxO 0 RsO 0 MR0 /Me 0 CHO H MeRO Me H Me H
RxO
IV-b
79. The method according to claim 74, wherein the compound of formula IV is: O OH Me Me H BnO 2C Me H 0 BnO ~ Bn 0 .L0"r BnO nOO 0 CHO H Me BnO"Me BnO OBn 0 H H Me BnO, OBn BnO
O OH Me Me H BnO2C Me H EtSiO OE 3 SiOL: o TLL tSO S o Me H Me 'e Et 3SiO Et 3SiO O0 H H Et3 Si' Me Et3SiO COSiEt3 Et 3SiO vo
O OH Me Me H BnO 2 C Me H Et3 SO o ~ L Et3 SiO 0 HCHO HH Me 0 "'Me 0 EtSiO H Et3Si Me Et 3SiO EtSiO OSiEt 3 Et 3SiO Et3 SiO
80. The method according to claim 74, wherein the compound of formula I is of formula I-a:
0 RR Me Me H RIO RYO 2C Me HR1 RxO 0Lx RxO 0KJ CHO ' Me RxO "Me ORX ORX 0 H Me RxO ORx RxO
81. A compound of formula IV: 0 Y' Me Me H RY(O)C Me H RxO 0 L 0 W Me V "'Me OH H Me
Rx0# Rx
RxO IV wherein:
-- is a single or double bond;
Y'is hydrogen, halogen, alkyl, aryl, OR, ORY, OH, NR 2, NRI, NHR, NH 2 , SR, or NROR; RXO ORX W is Me, -CHO, I , -CH2 OR, or -C(O)Ry; V is hydrogen or -OR; Ry is -OH, or a carboxyl protecting group selected from the group consisting of ester, amides, and hydrazides;
RxO
RXO RxO
Rs is ORx or RXOMe each occurrence of Rx is independently an optionally substituted group selected from 6-10
membered aryl, C1 _6 aliphatic, or C1 6_ heteroaliphatic having 1-2 heteroatoms
independently selected from the group consisting of nitrogen, oxygen, and sulfur; or: two R' are taken together to form a 5-7-membered heterocyclic ring having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of R is independently hydrogen, an optionally substituted group selected from acyl, arylalkyl, 6-10-membered aryl, C1-12 aliphatic, or C1 -12 heteroaliphatic having 1-2 heteroatoms independently selected from the group consisting of nitrogen, oxygen, and sulfur; each occurrence of Rx is independently hydrogen or an oxygen protecting group; with the provisos that at least one R is an oxygen protecting group; that when Y' is -OH, -OMe, or -Oallyl, at least seven Rx groups are silyl ethers; and that no more than four R groups can simutaneously be methyl groups; with the provisos that Y' is not -OH or -OMe if all R groups are hydrogen or if at least four R groups are methyl; and that the compound is not one of the following:
0 OH Me Me H BnO 2C Me H
B3_0 H-HO H Me /O"me BnO O~n 0H H Et3 Si Me BnO >/SiEt 3 VC 0 OH BnO M4 Bn2CMe Me HH BnO 2 Me HHM 0n CHO Me HO "Me BnO O~n 0 H H Me BnO*YOH 0Ol RnO Me Me H BnO2 MeH BnO--, 0EtASi L on CHO Hi Me 0O"'Me BnO O~n H0 H Et 3Si /Me
Bn., 4 OSiEt 3 0 OalyI BnO M Me H BnO 2C Me MHH Bn Bn :_ 0O~n0 Me H Lj --HOMe .L 0, BO 0 HOCHO H Me BnO O H H Mely
BnO Me Me H H02 C Me H BnO 0 H0. BnO 0~ HCHO H Me HO"'Me B Own0 H Me Bno c H0 OaIlyI BnO M Me H MeO 2 C Me MeHH
BnO 0 CHO Me HO "Me BnO O~n 0 H H Me RnO ~4O~z RnO
0 OMe Me Me H MeO Me 0AcO O L BnO O O CH H Me HO 'Me BnO OBn j H H Me BnO OBZ BnO 0 OMe 0 Me Me H MeO Me O H 0 AcO B O O HCHO H Me HO 'Me BzO OBn 0 H H Me BnO OBz BnO
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