AU2018271407B2 - Isolated polynucleotides and polypeptides, and methods of using same for increasing plant yield and/or agricultural characteristics - Google Patents

Isolated polynucleotides and polypeptides, and methods of using same for increasing plant yield and/or agricultural characteristics Download PDF

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AU2018271407B2
AU2018271407B2 AU2018271407A AU2018271407A AU2018271407B2 AU 2018271407 B2 AU2018271407 B2 AU 2018271407B2 AU 2018271407 A AU2018271407 A AU 2018271407A AU 2018271407 A AU2018271407 A AU 2018271407A AU 2018271407 B2 AU2018271407 B2 AU 2018271407B2
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blastp
rice
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lym10
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Alex Diber
Eyal Emmanuel
Hagai Karchi
Sarah Rachel Pollock
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Evogene Ltd
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Evogene Ltd
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Priority claimed from AU2015202631A external-priority patent/AU2015202631B2/en
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Abstract

Provided are isolated polynucleotides which comprise a nucleic acid sequence at least 80% identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739; isolated polypeptides which comprise an amino acid sequence at least 80% homologous to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737, and methods of using same for increasing a yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.

Description

ISOLATED POLYNUCLEOTIDES AND POLYPEPTIDES, AND METHODS OF USING SAME FOR INCREASING PLANT YIELD AND/OR AGRICULTURAL
CHARACTERISTICS
RELATED APPLICATIONS
This application is a divisional application of Australian Patent Application No. 2017204404, filed on 28 June 2017, which is a divisional of Australian Patent Application No. 2016213786, filed on 11 August 2016, which is a divisional of Australian Patent Application No. 2015202631, filed on 15 May 2015, which is a divisional of Australian Patent Application 10 No. 2010220157, filed on 1 March 2010, and is related to International Patent Application No.
PCT/IB2010/050871, filed on 1 March 2010 and claims priority from U.S. Provisional Patent Application Nos. 61/202,459, filed on 2 March 2009, 61/231,349, filed on 5 August 2009 and 61/282,183, filed on 28 December 2009; each of which is incorporated herein by reference in its entirety.
FIELD AND BACKGROUND OF THE INVENTION
The present invention, in some embodiments thereof, relates to isolated polynucleotides and polypeptides which can increase the yield (e.g., biomass, grain quantity and/or quality), growth rate, vigor, abiotic stress tolerance (ABST), water use efficiency (WUE), nitrogen use 10 efficiency (NUE) and/or fertilizer use efficiency (FUE) of a plant.
The ever-increasing world population and the decreasing availability in arable land for agriculture affect the yield of plants and plant-related products. The global shortage of water supply, desertification, abiotic stress (ABS) conditions (e.g., salinity, drought, flood, suboptimal temperature and toxic chemical pollution), and/or limited nitrogen and fertilizer sources cause 25 substantial damage to agricultural plants such as major alterations in the plant metabolism, cell death, and decreases in plant growth and crop productivity.
Drought is a gradual phenomenon, which involves periods of abnormally dry weather that persists long enough to produce serious hydrologic imbalances such as crop damage, water supply shortage and increased susceptibility to various diseases.
Salinity, high salt levels, affects one in five hectares of irrigated land. None of the top five food crops, i.e., wheat, corn, rice, potatoes, and soybean, can tolerate excessive salt. Detrimental effects of salt on plants result from both water deficit, which leads to osmotic stress (similar to drought stress), and the effect of excess sodium ions on critical biochemical processes. As with freezing and drought, high salt causes water deficit; and the presence of
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2018271407 30 Nov 2018 high salt makes it difficult for plant roots to extract water from their environment. Thus, salination of soils that are used for agricultural production is a significant and increasing problem in regions that rely heavily on agriculture, and is worsen by over-utilization, overfertilization and water shortage, typically caused by climatic change and the demands of 5 increasing population.
Suboptimal temperatures affect plant growth and development through the whole plant life cycle. Thus, low temperatures reduce germination rate and high [Text continues on page 2.]
2018271407 30 Nov 2018 temperatures result in leaf necrosis. In addition, mature plants that are exposed to excess heat may experience heat shock, which may arise in various organs, including leaves and particularly fruit, when transpiration is insufficient to overcome heat stress. Heat also damages cellular structures, including organelles and cytoskeleton, and impairs membrane function. Heat shock may produce a decrease in overall protein synthesis, accompanied by expression of heat shock proteins, e.g., chaperones, which are involved in refolding proteins denatured by heat. High-temperature damage to pollen almost always occurs in conjunction with drought stress, and rarely occurs under well-watered conditions. Combined stress can alter plant metabolism in novel ways. Excessive chilling conditions, e.g., low, but above freezing, temperatures affect crops of tropical origins, such as soybean, rice, maize, and cotton. Typical chilling damage includes wilting, necrosis, chlorosis or leakage of ions from cell membranes. Excessive light conditions, which occur under clear atmospheric conditions subsequent to cold late summer/autumn night’s, can lead to photoinhibition of photosynthesis (disruption of photosynthesis). In addition, chilling may lead to yield losses and lower product quality through the delayed ripening of maize.
Suboptimal nutrient (macro and micro nutrient) affect plant growth and development through the whole plant life cycle. One of the essential macronutrients for the plant is Nitrogen. Nitrogen is responsible for biosynthesis of amino acids and nucleic acids, prosthetic groups, plant hormones, plant chemical defenses, and the like. Nitrogen is often the rate-limiting element in plant growth and all field crops have a fundamental dependence on inorganic nitrogenous fertilizer. Since fertilizer is rapidly depleted from most soil types, it must be supplied to growing crops two or three times during the growing season. Additional important macronutrients are Phosphorous (P) and Potassium (K), which have a direct correlation to yield and general plant tolerance.
Yield is affected by various factors, such as, the number and size of the plant organs, plant architecture (for example, the number of branches), grains set length, number of filled grains, vigor (e.g. seedling), growth rate, root development, utilization of water, nutrients (e.g., nitrogen) and fertilizers, and stress tolerance.
Crops such as, com, rice, wheat, canola and soybean account for over half of total human caloric intake, whether through direct consumption of the seeds themselves or through consumption of meat products raised on processed seeds or forage. Seeds are
2018271407 30 Nov 2018 also a source of sugars, oils and metabolites used in industrial processes. The ability to increase plant yield, whether through increase dry matter accumulation rate, modifying cellulose or lignin composition, increase stalk strength, enlarge meristem size, change of plant branching pattern, erectness of levees, increase in fertilization efficiency, enhanced seed dry matter accumulation rate, modification of seed development, enhanced seed filling or by increasing the content of oil, starch or protein in the seeds would have many applications in agricultural and non-agricultural uses such as in the biotechnological production of pharmaceuticals, antibodies or vaccines.
Studies have shown that plant adaptations to adverse environmental conditions are complex genetic traits with polygenic nature. Conventional means for crop and horticultural improvements utilize selective breeding techniques to identify plants having desirable characteristics. However, selective breeding is tedious, time consuming and has an unpredictable outcome. Furthermore, limited germplasm resources for yield improvement and incompatibility in crosses between distantly related plant species represent significant problems encountered in conventional breeding. Advances in genetic engineering have allowed mankind to modify the germplasm of plants by expression of genes-of-interest in plants. Such a technology has the capacity to generate crops or plants with improved economic, agronomic or horticultural traits.
WO publication No. 2009/013750 discloses genes, constructs and methods of increasing abiotic stress tolerance, biomass and/or yield in plants generated thereby.
WO publication No. 2008/122980 discloses genes constructs and methods for increasing oil content, growth rate and biomass of plants.
WO publication No. 2008/075364 discloses polynucleotides involved in plant fiber development and methods of using same.
WO publication No. 2007/049275 discloses isolated polypeptides, polynucleotides encoding same, transgenic plants expressing same and methods of using same for increasing plant abiotic stress tolerance and biomass.
WO publication No. 2004/104162 discloses methods of increasing abiotic stress tolerance and/or biomass in plants and plants generated thereby.
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WO publication No. 2005/121364 discloses polynucleotides and polypeptides involved in plant fiber development and methods of using same for improving fiber quality, yield and/or biomass of a fiber producing plant.
WO publication No. 2007/020638 discloses methods of increasing abiotic stress tolerance and/or biomass in plants and plants generated thereby.
SUMMARY OF THE INVENTION
According to an aspect of some embodiments of the present invention there is provided a method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence at least 80 % identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
According to an aspect of some embodiments of the present invention there is provided a method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
According to an aspect of some embodiments of the present invention there is provided a method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80 % identical to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
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According to an aspect of some embodiments of the present invention there is provided a method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide comprising a nucleic acid sequence at least 80 % identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739, wherein said nucleic acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide comprising the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises an amino acid sequence at least 80 % homologous to the amino acid sequence set forth in SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 36753736 or 3737, wherein said nucleic acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
According to an aspect of some embodiments of the present invention there is provided a nucleic acid construct comprising the isolated polynucleotide of claim 5, 6, 7
2018271407 30 Nov 2018 or 8, and a promoter for directing transcription of said nucleic acid sequence in a host cell.
According to an aspect of some embodiments of the present invention there is provided an isolated polypeptide comprising an amino acid sequence at least 80 % homologous to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737, wherein said amino acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
According to an aspect of some embodiments of the present invention there is provided an isolated polypeptide comprising the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
According to an aspect of some embodiments of the present invention there is provided a plant cell exogenously expressing the polynucleotide of claim 5, 6, 7 or 8 or the nucleic acid construct of claim 9.
According to an aspect of some embodiments of the present invention there is provided a plant cell exogenously expressing the polypeptide of claim 10 or 11.
According to some embodiments of the invention, the nucleic acid sequence is as set forth in SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739.
According to some embodiments of the invention, the polynucleotide consists of the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
According to some embodiments of the invention, the nucleic acid sequence encodes an amino acid sequence at least 80 % homologous to SEQ ID NO: 246, 240245, 247-465, 1974-3480, 3675-3736 or 3737.
According to some embodiments of the invention, the nucleic acid sequence encodes the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
According to some embodiments of the invention, the plant cell forms a part of a plant.
According to some embodiments of the invention, the abiotic stress is selected from the group consisting of salinity, drought, water deprivation, low temperature, high
2018271407 27 Apr 2020 temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, atmospheric pollution and UV irradiation.
According to some embodiments of the invention, the method further comprises growing the plant under the abiotic stress.
According to some embodiments of the invention, the method, further comprises growing the plant under nitrogen-limiting conditions.
Definitions of the specific embodiments of the invention as claimed herein follow.
According to a first embodiment of the invention, there is provided a method of increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency or reducing time to 10 flowering and/or to inflorescence emergence of a plant, comprising over-expressing within the plant a polypeptide comprising an amino acid sequence at least 80% identical to SEQ ID NO: 434, and growing the plant over-expressing said polypeptide under non-stress conditions, thereby increasing the yield, biomass, growth rate, vigor, and/or nitrogen use efficiency, or reducing the time to flowering and/or to inflorescence emergence, of the plant.
According to a second embodiment of the invention, there is provided a method of increasing tolerance of a plant to salinity stress, comprising over-expressing within the plant a polypeptide comprising an amino acid sequence at least 80% identical to SEQ ID NO: 434, and growing the plant over-expressing said polypeptide under salinity stress conditions, thereby increasing the tolerance of the plant to salinity stress.
According to a third embodiment of the invention, there is provided a method of producing a crop, comprising growing a crop plant transformed with an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80% homologous to the amino acid sequence set forth in SEQ ID NO: 434, wherein the crop plant is derived from plants which have been transformed with said exogenous polynucleotide and 25 which have been selected for increased yield, increased biomass, increased growth rate, increased vigor, increased nitrogen use efficiency, reduced time to flowering and/or reduced time to inflorescence emergence under non-stress conditions as compared to a wild type plant of the same species which is grown under the same growth conditions, and the crop plant has the increased yield, increased biomass, increased growth rate, increased vigor, increased 30 nitrogen use efficiency, reduced time to flowering and/or reduced time to inflorescence emergence under the non-stress conditions, thereby producing the crop.
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According to a fourth embodiment of the invention, there is provided a method of producing a crop, comprising growing a crop plant transformed with an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80% homologous to the amino acid sequence set forth in SEQ ID NO: 434, wherein the crop plant is 5 derived from plants which have been transformed with said exogenous polynucleotide and which have been selected for increased tolerance to salinity stress as compared to a wild type plant of the same species which is grown under the same growth conditions, and the crop plant has the increased tolerance to salinity stress, thereby producing the crop.
According to a fifth embodiment of the invention, there is provided a nucleic acid 10 construct comprising an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises an amino acid sequence at least 85% identical to the amino acid sequence set forth in SEQ ID NO: 434, and a heterologous promoter operably linked to said isolated polynucleotide, wherein said nucleic acid sequence is capable of:
(i) increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency of a 15 plant under non-stress conditions;
(ii) reducing time to flowering and/or to inflorescence emergence of a plant under non-stress conditions; and/or (iii) increasing tolerance of a plant to salinity stress.
According to a sixth embodiment of the invention, there is provided an isolated 20 polypeptide comprising an amino acid sequence at least 85% identical to SEQ ID NO: 434, wherein said amino acid sequence is capable of:
(i) increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency of a plant under non-stress conditions, (ii) reducing time to flowering and/or to inflorescence emergence of a plant under 25 non-stress conditions, and/or (iii) increasing tolerance of a plant to salinity stress.
According to a seventh embodiment of the invention, there is provided a transgenic plant cell comprising the nucleic acid construct of the fifth embodiment.
According to an eighth embodiment of the invention, there is provided a transgenic plant 30 comprising the cell of the seventh embodiment, or the nucleic acid construct of the fifth embodiment.
According to a ninth embodiment of the invention, there is provided a method of selecting plants having increased yield, biomass, growth rate, vigor, and/or nitrogen use efficiency, and/or reduced time to flowering and/or time to inflorescence emergence under non7b
2018271407 27 Apr 2020 stress conditions, or increasing tolerance to salinity stress, the method comprising selecting plants transformed with the nucleic acid construct of the fifth embodiment for an increased trait as compared to a native plant which is grown under the same growth conditions, wherein said trait is selected from the group consisting of: yield under non-stress conditions, biomass under 5 non-stress conditions, growth rate under non-stress conditions, vigor under non-stress conditions, salinity stress tolerance, nitrogen use efficiency under non-stress conditions, reduced time to flowering under non-stress conditions and/or reduced time to inflorescence emergence under non-stress conditions.
Unless otherwise defined, all technical and/or scientific terms used herein have the same 10 meaning as commonly understood by one of ordinary skill in the art to which the invention pertains. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of embodiments of the invention, exemplary methods and/or materials are described below. In case of conflict, the patent specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and are not 15 intended to be necessarily limiting.
BRIEF DESCRIPTION OF THE DRAWINGS
Some embodiments of the invention are herein described, by way of example only, with reference to the accompanying drawings. With specific reference now to the drawings in detail, 20 it is stressed that the particulars shown are by way of example and for purposes of illustrative discussion of embodiments of the invention. In this regard, the description taken with the drawings makes apparent to those skilled in the art how embodiments of the invention may be practiced.
In the drawings:
FIG. 1 is a schematic illustration of the modified pGI binary plasmid containing the new
At6669 promoter (SEQ ID NO:4198) and the GUSintron (pQYN_6669) used for expressing the isolated polynucleotide sequences of the invention. RB - T-DNA right border; LB - T-DNA left border; MCS - Multiple cloning site; RE - any restriction enzyme; NOS pro = nopaline synthase promoter; NPT-II = neomycin phosphotransferase gene; NOS ter = nopaline synthase terminator; Poly-A signal (polyadenylation signal); GUSintron - the GUS reporter gene (coding sequence and intron). The isolated polynucleotide sequences of the invention were cloned into the vector while replacing the GUSintron reporter gene.
[Text continues on page 8.]
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FIG. 2 is a schematic illustration of the modified pGI binary plasmid containing the new At6669 promoter (SEQ ID NO:4198) (pQFN) used for expressing the isolated polynucleotide sequences of the invention. RB - T-DNA right border; LB - T-DNA left border; MCS - Multiple cloning site; RE - any restriction enzyme; NOS pro = nopaline synthase promoter; NPT-II = neomycin phosphotransferase gene; NOS ter = nopaline synthase terminator; Poly-A signal (polyadenylation signal); GUSintron - the GUS reporter gene (coding sequence and intron). The isolated polynucleotide sequences of the invention were cloned into the MCS of the vector.
FIGs. 3A-F are images depicting visualization of root development of transgenic plants exogenously expressing the polynucleotide of some embodiments of the invention when grown in transparent agar plates under normal (FIGs. 3A-B), osmotic stress (15 % PEG; FIGs. 3C-D) or nitrogen-limiting (FIGs. 3E-F) conditions. The different transgenes were grown in transparent agar plates for 17 days (7 days nursery and 10 days after transplanting). The plates were photographed every 3-4 days starting at day 1 after transplanting. FIG. 3A - An image of a photograph of plants taken following 10 after transplanting days on agar plates when grown under normal (standard) conditions. FIG. 3B - An image of root analysis of the plants shown in FIG. 3A in which the lengths of the roots measured are represented by arrows. FIG. 3C - An image of a photograph of plants taken following 10 days after transplanting on agar plates, grown under high osmotic (PEG 15 %) conditions. FIG. 3D - An image of root analysis of the plants shown in FIG. 3C in which the lengths of the roots measured are represented by arrows. FIG. 3E - An image of a photograph of plants taken following 10 days after transplanting on agar plates, grown under low nitrogen conditions. FIG. 3F - An image of root analysis of the plants shown in FIG. 3E in which the lengths of the roots measured are represented by arrows.
DESCRIPTION OF SPECIFIC EMBODIMENTS OF THE INVENTION
The present invention, in some embodiments thereof, relates to isolated polynucleotides and polypeptides which can increase yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality abiotic stress tolerance, and/or fertilizer use efficiency (e.g., nitrogen use efficiency) of a plant.
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Before explaining at least one embodiment of the invention in detail, it is to be understood that the invention is not necessarily limited in its application to the details set forth in the following description or exemplified by the Examples. The invention is capable of other embodiments or of being practiced or carried out in various ways.
The present inventors have identified novel polynucleotides and polypeptides which can be used in increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality abiotic stress tolerance, and/or fertilizer use efficiency (e.g., nitrogen use efficiency) of a plant.
As shown in the Examples section which follows, the present inventors have employed a bioinformatic approach which combines clustering and assembly of sequences from databases of arabidopsis, rice, poplar, brachypodium, soybean, grape, castobean, sorghum and maize and other publicly available plant genomes, expressed sequence tags (ESTs), mRNA sequences, properitary ESTs sequences (Barley, Sorghum), protein and pathway databases, quantitative trait loci (QTL), single nucleotide polymorphism (SNPs) information with a digital expression profile (“electronic Northern Blot”) and identified polynucleotides and polypeptides which can increase yield, growth rate, biomass, vigor, tolerance to abiotic stress, nitrogen use efficiency, water use efficiency and fertilizer use efficiency (SEQ ID NOs: 1-239 for polynucleotides; SEQ ID NOs:240-465 for polypeptides; Table 1, Example 1). Orthologs from plant species which exhibit at least 80 % homology to the identified polypeptides and polynucleotides were also identified (SEQ ID NO:467-1973 for polynucleotides; SEQ ID NOs: 1974-3480 for polypeptides; Table 2, Example 1). Selected genes were cloned (Example 7, Tables 26-28), transformed into agrobacterium tumefaciens cells (Example 8) and further into arabidopsis plants (Example 9). Transgenic plants over-expressing the identified polynucleotides were found to exhibit increased seed yield, oil yield, dry weight, fresh weight, root coverage, root length, harvest index, growth rate, rosette area, biomass, oil percentage in seed and weight of 1000 seeds (Examples 10-11; Tables 29-36), and increased tolerance to abiotic stress conditions such as limiting nitrogen conditions (Example 11, Tables 37-38). Thus, the identified polynucleotides and polypeptides of the invention can be used to increase plant’s yield, biomass (e.g., of grain or any harvestable plant part with economical
2018271407 30 Nov 2018 value), vigor, growth rate, oil content, fiber yield, fiber quality, tolerance to abiotic stress, nitrogen use efficiency, water use efficiency and/or fertilizer use efficiency.
Thus, according to an aspect of some embodiments of the invention there is provided a method of increasing a yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, water use efficiency, nitrogen use efficiency, fertilizer use efficiency and/or abiotic stress tolerance of a plant.
The method is effected by expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence at least 80 % identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, water use efficiency, nitrogen use efficiency, fertilizer use efficiency and/or abiotic stress tolerance of the plant.
As used herein the phrase plant yield refers to the amount (e.g., as determined by weight or size) or quantity (numbers) of tissues or organs produced per plant or per growing season. Hence increased yield could affect the economic benefit one can obtain from the plant in a certain growing area and/or growing time.
It should be noted that a plant yield can be affected by various parameters including, but not limited to, plant biomass; plant vigor; growth rate; seed yield; seed or grain quantity; seed or grain quality; oil yield; content of oil, starch and/or protein in harvested organs (e.g., seeds or vegetative parts of the plant); number of flowers (florets) per panicle (expressed as a ratio of number of filled seeds over number of primary panicles); harvest index; number of plants grown per area; number and size of harvested organs per plant and per area; number of plants per growing area (density); number of harvested organs in field; total leaf area; carbon assimilation and carbon partitioning (the distribution/allocation of carbon within the plant); resistance to shade; number of harvestable organs (e.g. seeds), seeds per pod, weight per seed; and modified architecture [such as increase stalk diameter, thickness or improvement of physical properties (e.g. elasticity)] .
As used herein the phrase “seed yield” refers to the number or weight of the seeds per plant, seeds per pod, or per growing area or to the weight of a single seed, or to the oil extracted per seed. Hence seed yield can be affected by seed dimensions (e.g., length, width, perimeter, area and/or volume), number of (filled) seeds and seed filling
2018271407 30 Nov 2018 rate and by seed oil content. Hence increase seed yield per plant could affect the economic benefit one can obtain from the plant in a certain growing area and/or growing time; and increase seed yield per growing area could be achieved by increasing seed yield per plant, and/or by increasing number of plants grown on the same given area.
The term seed (also referred to as grain or kernel) as used herein refers to a small embryonic plant enclosed in a covering called the seed coat (usually with some stored food), the product of the ripened ovule of gymnosperm and angiosperm plants which occurs after fertilization and some growth within the mother plant.
The phrase “oil content” as used herein refers to the amount of lipids in a given plant organ, either the seeds (seed oil content) or the vegetative portion of the plant (vegetative oil content) and is typically expressed as percentage of dry weight (10 % humidity of seeds) or wet weight (for vegetative portion).
It should be noted that oil content is affected by intrinsic oil production of a tissue (e.g., seed, vegetative portion), as well as the mass or size of the oil-producing tissue per plant or per growth period.
In one embodiment, increase in oil content of the plant can be achieved by increasing the size/mass of a plant's tissue(s) which comprise oil per growth period. Thus, increased oil content of a plant can be achieved by increasing the yield, growth rate, biomass and vigor of the plant.
As used herein the phrase plant biomass refers to the amount (e.g., measured in grams of air-dry tissue) of a tissue produced from the plant in a growing season, which could also determine or affect the plant yield or the yield per growing area. An increase in plant biomass can be in the whole plant or in parts thereof such as aboveground (harvestable) parts, vegetative biomass, roots and seeds.
As used herein the phrase “growth rate” refers to the increase in plant organ/tissue size per time (can be measured in cm2 per day).
As used herein the phrase plant vigor refers to the amount (measured by weight) of tissue produced by the plant in a given time. Hence increased vigor could determine or affect the plant yield or the yield per growing time or growing area. In addition, early vigor (seed and/or seedling) results in improved field stand.
It should be noted that a plant yield can be determined under stress (e.g., abiotic stress, nitrogen-limiting conditions) and/or non-stress (normal) conditions.
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As used herein, the phrase “non-stress conditions” refers to the growth conditions (e.g., water, temperature, light-dark cycles, humidity, salt concentration, fertilizer concentration in soil, nutrient supply such as nitrogen, phosphorous and/or potassium), that do not significantly go beyond the everyday climatic and other abiotic conditions that plants may encounter, and which allow optimal growth, metabolism, reproduction and/or viability of a plant at any stage in its life cycle (e.g., in a crop plant from seed to a mature plant and back to seed again). Persons skilled in the art are aware of normal soil conditions and climatic conditions for a given plant in a given geographic location. It should be noted that while the non-stress conditions may include some mild variations from the optimal conditions (which vary from one type/species of a plant to another), such variations do not cause the plant to cease growing without the capacity to resume growth.
The phrase abiotic stress as used herein refers to any adverse effect on metabolism, growth, reproduction and/or viability of a plant. Accordingly, abiotic stress can be induced by suboptimal environmental growth conditions such as, for example, salinity, water deprivation, flooding, freezing, low or high temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, atmospheric pollution or UV irradiation. The implications of abiotic stress are discussed in the Background section.
The phrase “abiotic stress tolerance” as used herein refers to the ability of a plant to endure an abiotic stress without suffering a substantial alteration in metabolism, growth, productivity and/or viability.
As used herein the phrase “water use efficiency (WUE)” refers to the level of organic matter produced per unit of water consumed by the plant, i.e., the dry weight of a plant in relation to the plant's water use, e.g., the biomass produced per unit transpiration.
As used herein the phrase “fertilizer use efficiency” refers to the metabolic process(es) which lead to an increase in the plant’s yield, biomass, vigor, and growth rate per fertilizer unit applied. The metabolic process can be the uptake, spread, absorbent, accumulation, relocation (within the plant) and use of one or more of the minerals and organic moieties absorbed by the plant, such as nitrogen, phosphates and/or potassium.
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As used herein the phrase “fertilizer-limiting conditions” refers to growth conditions which include a level (e.g., concentration) of a fertilizer applied which is below the level needed for normal plant metabolism, growth, reproduction and/or viability.
As used herein the phrase “nitrogen use efficiency (NUE)” refers to the metabolic process(es) which lead to an increase in the plant’s yield, biomass, vigor, and growth rate per nitrogen unit applied. The metabolic process can be the uptake, spread, absorbent, accumulation, relocation (within the plant) and use of nitrogen absorbed by the plant.
As used herein the phrase “nitrogen-limiting conditions” refers to growth conditions which include a level (e.g., concentration) of nitrogen (e.g., ammonium or nitrate) applied which is below the level needed for normal plant metabolism, growth, reproduction and/or viability.
Improved plant NUE and FUE is translated in the field into either harvesting similar quantities of yield, while implementing less fertilizers, or increased yields gained by implementing the same levels of fertilizers. Thus, improved NUE or FUE has a direct effect on plant yield in the field. Thus, the polynucleotides and polypeptides of some embodiments of the invention positively affect plant yield, seed yield, and plant biomass. In addition, the benefit of improved plant NUE will certainly improve crop quality and biochemical constituents of the seed such as protein yield and oil yield.
It should be noted that improved ABST will confer plants with improved vigor also under non-stress conditions, resulting in crops having improved biomass and/or yield e.g., elongated fibers for the cotton industry, higher oil content.
The term fiber is usually inclusive of thick-walled conducting cells such as vessels and tracheids and to fibrillar aggregates of many individual fiber cells. Hence, the term fiber refers to (a) thick-walled conducting and non-conducting cells of the xylem; (b) fibers of extraxylary origin, including those from phloem, bark, ground tissue, and epidermis; and (c) fibers from stems, leaves, roots, seeds, and flowers or inflorescences (such as those of Sorghum vulgare used in the manufacture of brushes and brooms).
As used herein the phrase fiber producing plant refers to plants that share the common feature of having an elongated shape and abundant cellulose in thick cell
2018271407 30 Nov 2018 walls, typically termed as secondary walls. Such walls may or may not be lignified, and the protoplast of such cells may or may be viable at maturity. Such fibers have many industrial uses, for example in lumber and manufactured wood products, paper, textiles, sacking and boxing material, cordage, brushes and brooms, filling and stuffing, caulking, reinforcement of other materials, and manufacture of cellulose derivatives.
Example of fiber producing plants, include, but are not limited to, agricultural crops such as cotton, silk cotton tree (Kapok, Ceiba pentandra), desert willow, creosote bush, winterfat, balsa, kenaf, roselle, jute, sisal abaca, flax, com, sugar cane, hemp, ramie, kapok, coir, bamboo, Spanish moss and Agave spp. (e.g. sisal).
According to a preferred embodiment of this aspect of the present invention the fiber producing plant is cotton.
As used herein the phrase fiber quality refers to at least one fiber parameter which is agriculturally desired, or required in the fiber industry (further described hereinbelow). Examples of such parameters, include but are not limited to, fiber length, fiber strength, fiber fitness, fiber weight per unit length, maturity ratio and uniformity.
Cotton fiber (lint) quality is typically measured according to fiber length, strength and fineness. Accordingly, the lint quality is considered higher when the fiber is longer, stronger and finer.
As used herein the phrase fiber yield refers to the amount or quantity of fibers produced from the fiber producing plant.
As used herein the term increasing refers to at least about 2 %, at least about 3 %, at least about 4 %, at least about 5 %, at least about 10 %, at least about 15 %, at least about 20 %, at least about 30 %, at least about 40 %, at least about 50 %, at least about 60 %, at least about 70 %, at least about 80 % or greater increase in plant yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, water use efficiency, nitrogen use efficiency, fertilizer use efficiency and/or abiotic stress tolerance as compared to a native plant \i.e., a plant not modified with the biomolecules (polynucleotide or polypeptides) of the invention, e.g., a non-transformed plant of the same species which is grown under the same growth conditions as the transformed plant].
The phrase “expressing within the plant an exogenous polynucleotide” as used herein refers to upregulating the expression level of an exogenous polynucleotide within
2018271407 30 Nov 2018 the plant by introducing the exogenous polynucleotide into a plant cell or plant and expressing by recombinant means, as further described herein below.
As used herein expressing refers to expression at the mRNA and optionally polypeptide level.
As used herein, the phrase exogenous polynucleotide refers to a heterologous nucleic acid sequence which may not be naturally expressed within the plant or which overexpression in the plant is desired. The exogenous polynucleotide may be introduced into the plant in a stable or transient manner, so as to produce a ribonucleic acid (RNA) molecule and/or a polypeptide molecule. It should be noted that the exogenous polynucleotide may comprise a nucleic acid sequence which is identical or partially homologous to an endogenous nucleic acid sequence of the plant.
The term “endogenous” as used herein refers to any polynucleotide or polypeptide which is present and/or naturally expressed within a plant or a cell thereof.
According to some embodiments of the invention, the exogenous polynucleotide comprises a nucleic acid which is at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, e.g., 100 % identical to the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
Identity (e.g., percent homology) can be determined using any homology comparison software, including for example, the BlastN software of the National Center of Biotechnology Information (NCBI) such as by using default parameters.
According to some embodiments of the invention the exogenous polynucleotide is at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, e.g.,
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100 % identical to the polynucleotide selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
According to some embodiments of the invention the exogenous polynucleotide consists of the nucleic acid sequence set forth in SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739.
As used herein the term “polynucleotide” refers to a single or double stranded nucleic acid sequence which is isolated and provided in the form of an RNA sequence, a complementary polynucleotide sequence (cDNA), a genomic polynucleotide sequence and/or a composite polynucleotide sequences (e.g., a combination of the above).
The term “isolated” refers to at least partially separated from the natural environment e.g., from a plant cell.
As used herein the phrase complementary polynucleotide sequence refers to a sequence, which results from reverse transcription of messenger RNA using a reverse transcriptase or any other RNA dependent DNA polymerase. Such a sequence can be subsequently amplified in vivo or in vitro using a DNA dependent DNA polymerase.
As used herein the phrase genomic polynucleotide sequence refers to a sequence derived (isolated) from a chromosome and thus it represents a contiguous portion of a chromosome.
As used herein the phrase composite polynucleotide sequence refers to a sequence, which is at least partially complementary and at least partially genomic. A composite sequence can include some exonal sequences required to encode the polypeptide of the present invention, as well as some intronic sequences interposing therebetween. The intronic sequences can be of any source, including of other genes, and typically will include conserved splicing signal sequences. Such intronic sequences may further include cis acting expression regulatory elements.
According to some embodiments of the invention, the exogenous polynucleotide of the invention encodes a polypeptide which comprises an amino acid sequence at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, or more say 100 % homologous to the
2018271407 30 Nov 2018 amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
Homology (e.g., percent homology) can be determined using any homology comparison software, including for example, the BlastP or TBLASTN software of the National Center of Biotechnology Information (NCBI) such as by using default parameters, when starting from a polypeptide sequence; or the tBLASTX algorithm (available via the NCBI) such as by using default parameters, which compares the sixframe conceptual translation products of a nucleotide query sequence (both strands) against a protein sequence database.
Homologous sequences include both orthologous and paralogous sequences. The term “paralogous” relates to gene-duplications within the genome of a species leading to paralogous genes. The term “orthologous” relates to homologous genes in different organisms due to ancestral relationship.
One option to identify orthologues in plant species is by performing a reciprocal blast search. This may be done by a first blast involving blasting the sequence-of-interest against any sequence database, such as the publicly available NCBI database which may be found at: Hypertext Transfer Protocol ://World Wide Web (dot) ncbi (dot) nlm (dot) nih (dot) gov. If orthologues in rice were sought, the sequence-of-interest would be blasted against, for example, the 28,469 full-length cDNA clones from Oryza sativa Nipponbare available at NCBI. The blast results may be filtered. The full-length sequences of either the filtered results or the non-filtered results are then blasted back (second blast) against the sequences of the organism from which the sequence-ofinterest is derived. The results of the first and second blasts are then compared. An orthologue is identified when the sequence resulting in the highest score (best hit) in the first blast identifies in the second blast the query sequence (the original sequence-ofinterest) as the best hit. Using the same rational a paralogue (homolog to a gene in the same organism) is found. In case of large sequence families, the ClustalW program may be used [Hypertext Transfer Protocol://World Wide Web (dot) ebi (dot) ac (dot) uk/Tools/clustalw2/index (dot) html], followed by a neighbor-joining tree (Hypertext Transfer Protocol://en (dot) wikipedia (dot) org/wiki/Neighbor-joining) which helps visualizing the clustering.
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According to some embodiments of the invention, the exogenous polynucleotide encodes a polypeptide consisting of the amino acid sequence set forth by SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737.
Nucleic acid sequences encoding the polypeptides of the present invention may be optimized for expression. Examples of such sequence modifications include, but are not limited to, an altered G/C content to more closely approach that typically found in the plant species of interest, and the removal of codons atypically found in the plant species commonly referred to as codon optimization.
The phrase codon optimization refers to the selection of appropriate DNA nucleotides for use within a structural gene or fragment thereof that approaches codon usage within the plant of interest. Therefore, an optimized gene or nucleic acid sequence refers to a gene in which the nucleotide sequence of a native or naturally occurring gene has been modified in order to utilize statistically-preferred or statistically-favored codons within the plant. The nucleotide sequence typically is examined at the DNA level and the coding region optimized for expression in the plant species determined using any suitable procedure, for example as described in Sardana et al. (1996, Plant Cell Reports 15:677-681). In this method, the standard deviation of codon usage, a measure of codon usage bias, may be calculated by first finding the squared proportional deviation of usage of each codon of the native gene relative to that of highly expressed plant genes, followed by a calculation of the average squared deviation. The formula used is:
Formula I
SDCU = n = 1 N [ ( Xn - Yn ) / Yn ] 2 / N, where Xn refers to the frequency of usage of codon n in highly expressed plant genes, where Yn to the frequency of usage of codon n in the gene of interest and N refers to the total number of codons in the gene of interest. A Table of codon usage from highly expressed genes of dicotyledonous plants is compiled using the data of Murray et al. (1989, Nuc Acids Res. 17:477-498).
One method of optimizing the nucleic acid sequence in accordance with the preferred codon usage for a particular plant cell type is based on the direct use, without performing any extra statistical calculations, of codon optimization Tables such as those provided on-line at the Codon Usage Database through the NIAS (National Institute of
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Agrobiological Sciences) DNA bank in Japan (Hypertext Transfer Protocol://World Wide Web (dot) kazusa (dot) or (dot) jp/codon/). The Codon Usage Database contains codon usage tables for a number of different species, with each codon usage Table having been statistically determined based on the data present in Genbank.
By using the above Tables to determine the most preferred or most favored codons for each amino acid in a particular species (for example, rice), a naturallyoccurring nucleotide sequence encoding a protein of interest can be codon optimized for that particular plant species. This is effected by replacing codons that may have a low statistical incidence in the particular species genome with corresponding codons, in regard to an amino acid, that are statistically more favored. However, one or more lessfavored codons may be selected to delete existing restriction sites, to create new ones at potentially useful junctions (5' and 3' ends to add signal peptide or termination cassettes, internal sites that might be used to cut and splice segments together to produce a correct full-length sequence), or to eliminate nucleotide sequences that may negatively effect mRNA stability or expression.
The naturally-occurring encoding nucleotide sequence may already, in advance of any modification, contain a number of codons that correspond to a statisticallyfavored codon in a particular plant species. Therefore, codon optimization of the native nucleotide sequence may comprise determining which codons, within the native nucleotide sequence, are not statistically-favored with regards to a particular plant, and modifying these codons in accordance with a codon usage table of the particular plant to produce a codon optimized derivative. A modified nucleotide sequence may be fully or partially optimized for plant codon usage provided that the protein encoded by the modified nucleotide sequence is produced at a level higher than the protein encoded by the corresponding naturally occurring or native gene. Construction of synthetic genes by altering the codon usage is described in for example PCT Patent Application 93/07278.
According to some embodiments of the invention, the exogenous polynucleotide is a non-coding RNA.
As used herein the phrase ‘non-coding RNA” refers to an RNA molecule which does not encode an amino acid sequence (a polypeptide). Examples of such non-coding
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RNA molecules include, but are not limited to, an antisense RNA, a pre-miRNA (precursor of a microRNA), or a precursor of a Piwi-interacting RNA (piRNA).
Non-limiting examples of non-coding RNA polynucleotides are provided in SEQ ID NOs:37 and 43.
Thus, the invention encompasses nucleic acid sequences described hereinabove; fragments thereof, sequences hybridizable therewith, sequences homologous thereto, sequences encoding similar polypeptides with different codon usage, altered sequences characterized by mutations, such as deletion, insertion or substitution of one or more nucleotides, either naturally occurring or man induced, either randomly or in a targeted fashion.
The invention provides an isolated polynucleotide comprising a nucleic acid sequence which is at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, e.g., 100 % identical to the polynucleotide selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
According to some embodiments of the invention the nucleic acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, water use efficiency, nitrogen use efficiency, fertilizer use efficiency and/or abiotic stress tolerance of a plant.
According to some embodiments of the invention the isolated polynucleotide consists of a nucleic acid sequence which is at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, e.g., 100 % identical to the polynucleotide selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 34883674, and 3738-3739.
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According to some embodiments of the invention the isolated polynucleotide comprising the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
According to some embodiments of the invention the isolated polynucleotide is set forth by SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739.
According to some embodiments of the invention the isolated polynucleotide consists of a nucleic acid sequence selected from the group of SEQ ID NOs: 3487, 1239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
The invention provides an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises an amino acid sequence at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, or more say 100 % homologous to the amino acid sequence selected from the group consisting of SEQ ID NO: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
According to some embodiments of the invention the amino acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, water use efficiency, nitrogen use efficiency, fertilizer use efficiency and/or abiotic stress tolerance of a plant.
The invention provides an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
The invention provides an isolated polypeptide having an amino acid sequence at least about 80 %, at least about 81 %, at least about 82 %, at least about 83 %, at least about 84 %, at least about 85 %, at least about 86 %, at least about 87 %, at least about 88 %, at least about 89 %, at least about 90 %, at least about 91 %, at least about 92 %, at least about 93 %, at least about 93 %, at least about 94 %, at least about 95 %, at least about 96 %, at least about 97 %, at least about 98 %, at least about 99 %, or more say
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100 % homologous to an amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
According to some embodiments of the invention, the isolated polypeptide is selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
The invention also encompasses fragments of the above described polypeptides and polypeptides having mutations, such as deletions, insertions or substitutions of one or more amino acids, either naturally occurring or man induced, either randomly or in a targeted fashion.
The term 'plant as used herein encompasses whole plants, ancestors and progeny of the plants and plant parts, including seeds, shoots, stems, roots (including tubers), and plant cells, tissues and organs. The plant may be in any form including suspension cultures, embryos, meristematic regions, callus tissue, leaves, gametophytes, sporophytes, pollen, and microspores. Plants that are particularly useful in the methods of the invention include all plants which belong to the superfamily Viridiplantae, in particular monocotyledonous and dicotyledonous plants including a fodder or forage legume, ornamental plant, food crop, tree, or shrub selected from the list comprising Acacia spp., Acer spp., Actinidia spp., Aesculus spp., Agathis australis, Albizia amara, Alsophila tricolor, Andropogon spp., Arachis spp, Areca catechu, Astelia fragrans, Astragalus cicer, Baikiaea plurijuga, Betula spp., Brassica spp., Bruguiera gymnorrhiza, Burkea africana, Butea frondosa, Cadaba farinosa, Calliandra spp, Camellia sinensis, Canna indica, Capsicum spp., Cassia spp., Centroema pubescens, Chacoomeles spp., Cinnamomum cassia, Coffea arabica, Colophospermum mopane, Coronillia varia, Cotoneaster serotina, Crataegus spp., Cucumis spp., Cupressus spp., Cyathea dealbata, Cydonia oblonga, Cryptomeria japonica, Cymbopogon spp., Cynthea dealbata, Cydonia oblonga, Dalbergia monetaria, Davallia divaricata, Desmodium spp., Dicksonia squarosa, Dibeteropogon amplectens, Dioclea spp, Dolichos spp., Dorycnium rectum, Echinochloa pyramidalis, Ehraffia spp., Eleusine coracana, Eragrestis spp., Erythrina spp., Eucalyptus spp., Euclea schimperi, Eulalia vi/losa, Pagopyrum spp., Feijoa sellowlana, Fragaria spp., Flemingia spp, Freycinetia banksli, Geranium thunbergii, GinAgo biloba, Glycine javanica, Gliricidia spp, Gossypium hirsutum, Grevillea spp., Guibourtia coleosperma, Hedysarum spp., Hemaffhia altissima, Heteropogon contoffus,
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Hordeum vulgare, Hyparrhenia rufa, Hypericum erectum, Hypeffhelia dissolute, Indigo incamata, Iris spp., Leptarrhena pyrolifolia, Lespediza spp., Lettuca spp., Leucaena leucocephala, Loudetia simplex, Lotonus bainesli, Lotus spp., Macrotyloma axillare, Malus spp., Manihot esculenta, Medicago saliva, Metasequoia glyptostroboides, Musa sapientum, Nicotianum spp., Onobrychis spp., Omithopus spp., Oryza spp., Peltophorum afficanum, Pennisetum spp., Persea gratissima, Petunia spp., Phaseolus spp., Phoenix canariensis, Phormium cookianum, Photinia spp., Picea glauca, Pinus spp., Pisum sativam, Podocarpus totara, Pogonarthria fleckii, Pogonaffhria squarrosa, Populus spp., Prosopis cineraria, Pseudotsuga menziesii, Pterolobium stellatum, Pyrus communis, Quercus spp., Rhaphiolepsis umbellata, Rhopalostylis sapida, Rhus natalensis, Ribes grossularia, Ribes spp., Robinia pseudoacacia, Rosa spp., Rubus spp., Salix spp., Schyzachyrium sanguineum, Sciadopitys vefficillata, Sequoia sempervirens, Sequoiadendron giganteum, Sorghum bicolor, Spinacia spp., Sporobolus fimbriatus, Stiburus alopecuroides, Stylosanthos humilis, Tadehagi spp, Taxodium distichum, Themeda triandra, Trifolium spp., Triticum spp., Tsuga heterophylla, Vaccinium spp., Vicia spp., Vitis vinifera, Watsonia pyramidata, Zantedeschia aethiopica, Zea mays, amaranth, artichoke, asparagus, broccoli, Brussels sprouts, cabbage, canola, carrot, cauliflower, celery, collard greens, flax, kale, lentil, oilseed rape, okra, onion, potato, rice, soybean, straw, sugar beet, sugar cane, sunflower, tomato, squash tea, maize, wheat, barely, rye, oat, peanut, pea, lentil and alfalfa, cotton, rapeseed, canola, pepper, sunflower, tobacco, eggplant, eucalyptus, a tree, an ornamental plant, a perennial grass and a forage crop. Alternatively algae and other non-Viridiplantae can be used for the methods of the present invention.
According to some embodiments of the invention, the plant used by the method of the invention is a crop plant such as rice, maize, wheat, barley, peanut, potato, sesame, olive tree, palm oil, banana, soybean, sunflower, canola, sugarcane, alfalfa, millet, leguminosae (bean, pea), flax, lupinus, rapeseed, tobacco, poplar, cotton and sorghum.
According to some embodiments of the invention, there is provided a plant cell exogenously expressing the polynucleotide of some embodiments of the invention, the nucleic acid construct of some embodiments of the invention and/or the polypeptide of some embodiments of the invention.
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According to some embodiments of the invention, expressing the exogenous polynucleotide of the invention within the plant is effected by transforming one or more cells of the plant with the exogenous polynucleotide, followed by generating a mature plant from the transformed cells and cultivating the mature plant under conditions suitable for expressing the exogenous polynucleotide within the mature plant.
According to some embodiments of the invention, the transformation is effected by introducing to the plant cell a nucleic acid construct which includes the exogenous polynucleotide of some embodiments of the invention and at least one promoter capable of directing transcription of the exogenous polynucleotide in the plant cell. Further details of suitable transformation approaches are provided herein below.
According to some embodiments of the invention, there is provided a nucleic acid construct comprising the isolated polynucleotide of the invention, and a promoter for directing transcription of the nucleic acid sequence of the isolated polynucleotide in a host cell.
According to some embodiments of the invention, the isolated polynucleotide is operably linked to the promoter sequence.
A coding nucleic acid sequence is “operably linked” to a regulatory sequence (e.g., promoter) if the regulatory sequence is capable of exerting a regulatory effect on the coding sequence linked thereto.
As used herein, the term “promoter” refers to a region of DNA which lies upstream of the transcriptional initiation site of a gene to which RNA polymerase binds to initiate transcription of RNA. The promoter controls where (e.g., which portion of a plant) and/or when (e.g., at which stage or condition in the lifetime of an organism) the gene is expressed.
Any suitable promoter sequence can be used by the nucleic acid construct of the present invention. According to some embodiments of the invention, the promoter is a constitutive promoter, a tissue-specific, or an abiotic stress-inducible promoter.
Suitable constitutive promoters include, for example, CaMV 35S promoter (SEQ ID NO:4196; Odell et al., Nature 313:810-812, 1985); Arabidopsis At6669 promoter (SEQ ID NO:4195; see PCT Publication No. W004081173A2); Arabidopsis new At6669 promoter (SEQ ID NO:4198); maize Ubi 1 (Christensen et al., Plant Sol. Biol. 18:675-689, 1992); rice actin (McElroy et al., Plant Cell 2:163-171, 1990); pEMU (Last
2018271407 30 Nov 2018 et al., Theor. Appl. Genet. 81:581-588, 1991); CaMV 19S (Nilsson et al., Physiol. Plant 100:456-462, 1997); GOS2 (de Pater et al, Plant J Nov;2(6):837-44, 1992); ubiquitin (Christensen et al, Plant Mol. Biol. 18: 675-689, 1992); Rice cyclophilin (Bucholz et al, Plant Mol Biol. 25(5):837-43, 1994); Maize H3 histone (Lepetit et al, Mol. Gen. Genet. 231: 276-285, 1992); Actin 2 (An et al, Plant J. 10(1); 107-121, 1996) and Synthetic Super MAS (Ni et al., The Plant Journal 7: 661-76, 1995). Other constitutive promoters include those in U.S. Pat. Nos. 5,659,026, 5,608,149; 5.608,144; 5,604,121; 5.569,597: 5.466,785; 5,399,680; 5,268,463; and 5,608,142.
Suitable tissue-specific promoters include, but not limited to, leaf-specific promoters [such as described, for example, by Yamamoto et al., Plant J. 12:255-265, 1997; Kwon et al., Plant Physiol. 105:357-67, 1994; Yamamoto et al., Plant Cell Physiol. 35:773-778, 1994; Gotor et al., Plant J. 3:509-18, 1993; Orozco et al., Plant Mol. Biol. 23:1129-1138, 1993; and Matsuoka et al., Proc. Natl. Acad. Sci. USA 90:9586-9590, 1993], seed-preferred promoters [e.g., from seed specific genes (Simon, et al., Plant Mol. Biol. 5. 191, 1985; Scofield, et al., J. Biol. Chem. 262: 12202, 1987; Baszczynski, et al., Plant Mol. Biol. 14: 633, 1990), Brazil Nut albumin (Pearson' et al., Plant Mol. Biol. 18: 235- 245, 1992), legumin (Ellis, et al. Plant Mol. Biol. 10: 203-214, 1988), Glutelin (rice) (Takaiwa, et al., Mol. Gen. Genet. 208: 15-22, 1986; Takaiwa, et al., FEBS Letts. 221: 43-47, 1987), Zein (Matzke et al., Plant Mol Biol, 143).323-32 1990), napA (Stalberg, et al., Planta 199: 515-519, 1996), Wheat SPA (Albanietal, Plant Cell, 9: 171- 184, 1997), sunflower oleosin (Cummins, etal., Plant Mol. Biol. 19: 873876, 1992)], endosperm specific promoters [e.g., wheat LMW and HMW, glutenin-1 (Mol Gen Genet 216:81-90, 1989; NAR 17:461-2), wheat a, b and g gliadins (EMBO3:1409-15, 1984), Barley Itrl promoter, barley Bl, C, D hordein (Theor Appl Gen 98:1253-62, 1999; Plant J 4:343-55, 1993; Mol Gen Genet 250:750- 60, 1996), Barley DOF (Mena et al., The Plant Journal, 116(1): 53- 62, 1998), Biz2 (EP99106056.7), Synthetic promoter (Vicente-Carbajosa et al., Plant J. 13: 629-640, 1998), rice prolamin NRP33, rice -globulin Glb-1 (Wu et al., Plant Cell Physiology 39(8) 885- 889, 1998), rice alpha-globulin REB/OHP-1 (Nakase et al. Plant Mol. Biol. 33: 513-S22, 1997), rice ADP-glucose PP (Trans Res 6:157-68, 1997), maize ESR gene family (Plant J 12:235-46, 1997), sorghum gamma- kafirin (PMB 32:1029-35, 1996); e.g., the Napin promoter (SEQ ID NO:4197)], embryo specific promoters [e.g., rice
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OSHI (Sato et al., Proc. Natl. Acad. Sci. USA, 93: 8117-8122), KNOX (PostmaHaarsma et al, Plant Mol. Biol. 39:257-71, 1999), rice oleosin (Wu et at, J. Biochem., 123:386, 1998)], and flower-specific promoters [e.g., AtPRP4, chalene synthase (chsA) (Van der Meer, et al., Plant Mol. Biol. 15, 95-109, 1990), LAT52 (Twell et al., Mol. Gen Genet. 217:240-245; 1989), apetala- 3],
Suitable abiotic stress-inducible promoters include, but not limited to, saltinducible promoters such as RD29A (Yamaguchi-Shinozalei et al., Mol. Gen. Genet. 236:331-340, 1993); drought-inducible promoters such as maize rabl7 gene promoter (Pla et al., Plant Mol. Biol. 21:259-266, 1993), maize rab28 gene promoter (Busk et al., Plant J. 11:1285-1295, 1997) and maize Ivr2 gene promoter (Pelleschi et al., Plant Mol. Biol. 39:373-380, 1999); heat-inducible promoters such as heat tomato hsp80-promoter from tomato (U.S. Pat. No. 5,187,267).
The nucleic acid construct of some embodiments of the invention can further include an appropriate selectable marker and/or an origin of replication. According to some embodiments of the invention, the nucleic acid construct utilized is a shuttle vector, which can propagate both in E. coli (wherein the construct comprises an appropriate selectable marker and origin of replication) and be compatible with propagation in cells. The construct according to some embodiments of the invention can be, for example, a plasmid, a bacmid, a phagemid, a cosmid, a phage, a virus or an artificial chromosome.
The nucleic acid construct of some embodiments of the invention can be utilized to stably or transiently transform plant cells. In stable transformation, the exogenous polynucleotide is integrated into the plant genome and as such it represents a stable and inherited trait. In transient transformation, the exogenous polynucleotide is expressed by the cell transformed but it is not integrated into the genome and as such it represents a transient trait.
There are various methods of introducing foreign genes into both monocotyledonous and dicotyledonous plants (Potrykus, I., Annu. Rev. Plant. Physiol., Plant. Mol. Biol. (1991) 42:205-225; Shimamoto et al., Nature (1989) 338:274-276).
The principle methods of causing stable integration of exogenous DNA into plant genomic DNA include two main approaches:
2018271407 30 Nov 2018 (i) Agrobacterium-mediated gene transfer (e.g., T-DNA using Agrobacterium tumefaciens or Agrobacterium rhizogenes); see for example, Klee et al. (1987) Annu. Rev. Plant Physiol. 38:467-486; Klee and Rogers in Cell Culture and Somatic Cell Genetics of Plants, Vol. 6, Molecular Biology of Plant Nuclear Genes, eds. Schell, J., and Vasil, L. K., Academic Publishers, San Diego, Calif. (1989) p. 225; Gatenby, in Plant Biotechnology, eds. Kung, S, and Amtzen, C. J., Butterworth Publishers, Boston, Mass. (1989) p. 93-112.
(ii) Direct DNA uptake: Paszkowski et al., in Cell Culture and Somatic Cell Genetics of Plants, Vol. 6, Molecular Biology of Plant Nuclear Genes eds. Schell, J., and Vasil, L. K., Academic Publishers, San Diego, Calif. (1989) p. 52-68; including methods for direct uptake of DNA into protoplasts, Toriyama, K. et al. (1988) Bio/Technology 6:1072-1074. DNA uptake induced by brief electric shock of plant cells: Zhang et al. Plant Cell Rep. (1988) 7:379-384. Fromm et al. Nature (1986) 319:791-793. DNA injection into plant cells or tissues by particle bombardment, Klein et al. Bio/Technology (1988) 6:559-563; McCabe et al. Bio/Technology (1988) 6:923926; Sanford, Physiol. Plant. (1990) 79:206-209; by the use of micropipette systems: Neuhaus et al., Theor. Appl. Genet. (1987) 75:30-36; Neuhaus and Spangenberg, Physiol. Plant. (1990) 79:213-217; glass fibers or silicon carbide whisker transformation of cell cultures, embryos or callus tissue, U.S. Pat. No. 5,464,765 or by the direct incubation of DNA with germinating pollen, DeWet et al. in Experimental Manipulation of Ovule Tissue, eds. Chapman, G. P. and Mantell, S. H. and Daniels, W. Longman, London, (1985) p. 197-209; and Ohta, Proc. Natl. Acad. Sci. USA (1986) 83:715-719.
The Agrobacterium system includes the use of plasmid vectors that contain defined DNA segments that integrate into the plant genomic DNA. Methods of inoculation of the plant tissue vary depending upon the plant species and the Agrobacterium delivery system. A widely used approach is the leaf disc procedure which can be performed with any tissue explant that provides a good source for initiation of whole plant differentiation. See, e.g., Horsch et al. in Plant Molecular Biology Manual A5, Kluwer Academic Publishers, Dordrecht (1988) p. 1-9. A supplementary approach employs the Agrobacterium delivery system in combination with vacuum
2018271407 30 Nov 2018 infiltration. The Agrobacterium system is especially viable in the creation of transgenic dicotyledonous plants.
There are various methods of direct DNA transfer into plant cells. In electroporation, the protoplasts are briefly exposed to a strong electric field. In microinjection, the DNA is mechanically injected directly into the cells using very small micropipettes. In microparticle bombardment, the DNA is adsorbed on microprojectiles such as magnesium sulfate crystals or tungsten particles, and the microprojectiles are physically accelerated into cells or plant tissues.
Following stable transformation plant propagation is exercised. The most common method of plant propagation is by seed. Regeneration by seed propagation, however, has the deficiency that due to heterozygosity there is a lack of uniformity in the crop, since seeds are produced by plants according to the genetic variances governed by Mendelian rules. Basically, each seed is genetically different and each will grow with its own specific traits. Therefore, it is preferred that the transformed plant be produced such that the regenerated plant has the identical traits and characteristics of the parent transgenic plant. For this reason it is preferred that the transformed plant be regenerated by micropropagation which provides a rapid, consistent reproduction of the transformed plants.
Micropropagation is a process of growing new generation plants from a single piece of tissue that has been excised from a selected parent plant or cultivar. This process permits the mass reproduction of plants having the preferred tissue expressing the fusion protein. The new generation plants which are produced are genetically identical to, and have all of the characteristics of, the original plant. Micropropagation allows mass production of quality plant material in a short period of time and offers a rapid multiplication of selected cultivars in the preservation of the characteristics of the original transgenic or transformed plant. The advantages of cloning plants are the speed of plant multiplication and the quality and uniformity of plants produced.
Micropropagation is a multi-stage procedure that requires alteration of culture medium or growth conditions between stages. Thus, the micropropagation process involves four basic stages: Stage one, initial tissue culturing; stage two, tissue culture multiplication; stage three, differentiation and plant formation; and stage four, greenhouse culturing and hardening. During stage one, initial tissue culturing, the tissue
2018271407 30 Nov 2018 culture is established and certified contaminant-free. During stage two, the initial tissue culture is multiplied until a sufficient number of tissue samples are produced to meet production goals. During stage three, the tissue samples grown in stage two are divided and grown into individual plantlets. At stage four, the transformed plantlets are transferred to a greenhouse for hardening where the plants' tolerance to light is gradually increased so that it can be grown in the natural environment.
According to some embodiments of the invention, the transgenic plants are generated by transient transformation of leaf cells, meristematic cells or the whole plant.
Transient transformation can be effected by any of the direct DNA transfer methods described above or by viral infection using modified plant viruses.
Viruses that have been shown to be useful for the transformation of plant hosts include CaMV, Tobacco mosaic virus (TMV), brome mosaic virus (BMV) and Bean Common Mosaic Virus (BV or BCMV). Transformation of plants using plant viruses is described in U.S. Pat. No. 4,855,237 (bean golden mosaic virus; BGV), EP-A 67,553 (TMV), Japanese Published Application No. 63-14693 (TMV), EPA 194,809 (BV), EPA 278,667 (BV); and Gluzman, Y. et al., Communications in Molecular Biology: Viral Vectors, Cold Spring Harbor Laboratory, New York, pp. 172-189 (1988). Pseudovirus particles for use in expressing foreign DNA in many hosts, including plants are described in WO 87/06261.
According to some embodiments of the invention, the virus used for transient transformations is avirulent and thus is incapable of causing severe symptoms such as reduced growth rate, mosaic, ring spots, leaf roll, yellowing, streaking, pox formation, tumor formation and pitting. A suitable avirulent virus may be a naturally occurring avirulent virus or an artificially attenuated virus. Virus attenuation may be effected by using methods well known in the art including, but not limited to, sub-lethal heating, chemical treatment or by directed mutagenesis techniques such as described, for example, by Kurihara and Watanabe (Molecular Plant Pathology 4:259-269, 2003), Galon et al. (1992), Atreya et al. (1992) and Huet et al. (1994).
Suitable virus strains can be obtained from available sources such as, for example, the American Type culture Collection (ATCC) or by isolation from infected plants. Isolation of viruses from infected plant tissues can be effected by techniques well known in the art such as described, for example by Foster and Tatlor, Eds. “Plant
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Virology Protocols: From Virus Isolation to Transgenic Resistance (Methods in Molecular Biology (Humana Pr), Vol 81)”, Humana Press, 1998. Briefly, tissues of an infected plant believed to contain a high concentration of a suitable virus, preferably young leaves and flower petals, are ground in a buffer solution (e.g., phosphate buffer solution) to produce a virus infected sap which can be used in subsequent inoculations.
Construction of plant RNA viruses for the introduction and expression of nonviral exogenous polynucleotide sequences in plants is demonstrated by the above references as well as by Dawson, W. O. et al., Virology (1989) 172:285-292; Takamatsu et al. EMBO J. (1987) 6:307-311; French et al. Science (1986) 231:1294-1297; Takamatsu et al. FEBS Letters (1990) 269:73-76; and U.S. Pat. No. 5,316,931.
When the virus is a DNA virus, suitable modifications can be made to the virus itself. Alternatively, the virus can first be cloned into a bacterial plasmid for ease of constructing the desired viral vector with the foreign DNA. The virus can then be excised from the plasmid. If the virus is a DNA virus, a bacterial origin of replication can be attached to the viral DNA, which is then replicated by the bacteria. Transcription and translation of this DNA will produce the coat protein which will encapsidate the viral DNA. If the virus is an RNA virus, the virus is generally cloned as a cDNA and inserted into a plasmid. The plasmid is then used to make all of the constructions. The RNA virus is then produced by transcribing the viral sequence of the plasmid and translation of the viral genes to produce the coat protein(s) which encapsidate the viral RNA.
In one embodiment, a plant viral polynucleotide is provided in which the native coat protein coding sequence has been deleted from a viral polynucleotide, a non-native plant viral coat protein coding sequence and a non-native promoter, preferably the subgenomic promoter of the non-native coat protein coding sequence, capable of expression in the plant host, packaging of the recombinant plant viral polynucleotide, and ensuring a systemic infection of the host by the recombinant plant viral polynucleotide, has been inserted. Alternatively, the coat protein gene may be inactivated by insertion of the non-native polynucleotide sequence within it, such that a protein is produced. The recombinant plant viral polynucleotide may contain one or more additional non-native subgenomic promoters. Each non-native subgenomic promoter is capable of transcribing or expressing adjacent genes or polynucleotide
2018271407 30 Nov 2018 sequences in the plant host and incapable of recombination with each other and with native subgenomic promoters. Non-native (foreign) polynucleotide sequences may be inserted adjacent the native plant viral subgenomic promoter or the native and a nonnative plant viral subgenomic promoters if more than one polynucleotide sequence is included. The non-native polynucleotide sequences are transcribed or expressed in the host plant under control of the subgenomic promoter to produce the desired products.
In a second embodiment, a recombinant plant viral polynucleotide is provided as in the first embodiment except that the native coat protein coding sequence is placed adjacent one of the non-native coat protein subgenomic promoters instead of a nonnative coat protein coding sequence.
In a third embodiment, a recombinant plant viral polynucleotide is provided in which the native coat protein gene is adjacent its subgenomic promoter and one or more non-native subgenomic promoters have been inserted into the viral polynucleotide. The inserted non-native subgenomic promoters are capable of transcribing or expressing adjacent genes in a plant host and are incapable of recombination with each other and with native subgenomic promoters. Non-native polynucleotide sequences may be inserted adjacent the non-native subgenomic plant viral promoters such that the sequences are transcribed or expressed in the host plant under control of the subgenomic promoters to produce the desired product.
In a fourth embodiment, a recombinant plant viral polynucleotide is provided as in the third embodiment except that the native coat protein coding sequence is replaced by a non-native coat protein coding sequence.
The viral vectors are encapsidated by the coat proteins encoded by the recombinant plant viral polynucleotide to produce a recombinant plant virus. The recombinant plant viral polynucleotide or recombinant plant virus is used to infect appropriate host plants. The recombinant plant viral polynucleotide is capable of replication in the host, systemic spread in the host, and transcription or expression of foreign gene(s) (exogenous polynucleotide) in the host to produce the desired protein.
Techniques for inoculation of viruses to plants may be found in Foster and Taylor, eds. “Plant Virology Protocols: From Virus Isolation to Transgenic Resistance (Methods in Molecular Biology (Humana Pr), Vol 81)”, Humana Press, 1998; Maramorosh and Koprowski, eds. “Methods in Virology” 7 vols, Academic Press, New
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York 1967-1984; Hill, S.A. “Methods in Plant Virology”, Blackwell, Oxford, 1984; Walkey, D.G.A. “Applied Plant Virology”, Wiley, New York, 1985; and Kado and Agrawa, eds. “Principles and Techniques in Plant Virology”, Van Nostrand-Reinhold, New York.
In addition to the above, the polynucleotide of the present invention can also be introduced into a chloroplast genome thereby enabling chloroplast expression.
A technique for introducing exogenous polynucleotide sequences to the genome of the chloroplasts is known. This technique involves the following procedures. First, plant cells are chemically treated so as to reduce the number of chloroplasts per cell to about one. Then, the exogenous polynucleotide is introduced via particle bombardment into the cells with the aim of introducing at least one exogenous polynucleotide molecule into the chloroplasts. The exogenous polynucleotide is selected such that it is integratable into the chloroplast's genome via homologous recombination which is readily effected by enzymes inherent to the chloroplast. To this end, the exogenous polynucleotide includes, in addition to a gene of interest, at least one polynucleotide stretch which is derived from the chloroplast's genome. In addition, the exogenous polynucleotide includes a selectable marker, which serves by sequential selection procedures to ascertain that all or substantially all of the copies of the chloroplast genomes following such selection will include the exogenous polynucleotide. Further details relating to this technique are found in U.S. Pat. Nos. 4,945,050; and 5,693,507 which are incorporated herein by reference. A polypeptide can thus be produced by the protein expression system of the chloroplast and become integrated into the chloroplast's inner membrane.
Since yield (or other parameters affecting yield such as growth rate, biomass, vigor, content of seeds, oil content and the like), fiber yield and/or quality, water use efficiency, fertilizer use efficiency, nitrogen use efficiency and/or abiotic stress tolerance in plants can involve multiple genes acting additively or in synergy (see, for example, in Quesda et al., Plant Physiol. 130:951-063, 2002), the invention also envisages expressing a plurality of exogenous polynucleotides in a single host plant to thereby achieve superior effect on yield, fiber yield and/or quality, water use efficiency, fertilizer use efficiency, nitrogen use efficiency and/or abiotic stress tolerance.
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Expressing a plurality of exogenous polynucleotides in a single host plant can be effected by co-introducing multiple nucleic acid constructs, each including a different exogenous polynucleotide, into a single plant cell. The transformed cell can then be regenerated into a mature plant using the methods described hereinabove.
Alternatively, expressing a plurality of exogenous polynucleotides in a single host plant can be effected by co-introducing into a single plant-cell a single nucleic-acid construct including a plurality of different exogenous polynucleotides. Such a construct can be designed with a single promoter sequence which can transcribe a polycistronic messenger RNA including all the different exogenous polynucleotide sequences. To enable co-translation of the different polypeptides encoded by the polycistronic messenger RNA, the polynucleotide sequences can be inter-linked via an internal ribosome entry site (IRES) sequence which facilitates translation of polynucleotide sequences positioned downstream of the IRES sequence. In this case, a transcribed polycistronic RNA molecule encoding the different polypeptides described above will be translated from both the capped 5' end and the two internal IRES sequences of the polycistronic RNA molecule to thereby produce in the cell all different polypeptides. Alternatively, the construct can include several promoter sequences each linked to a different exogenous polynucleotide sequence.
The plant cell transformed with the construct including a plurality of different exogenous polynucleotides can be regenerated into a mature plant, using the methods described hereinabove.
Alternatively, expressing a plurality of exogenous polynucleotides can be effected by introducing different nucleic acid constructs, including different exogenous polynucleotides, into a plurality of plants. The regenerated transformed plants can then be cross-bred and resultant progeny selected for superior yield (e.g., growth rate, biomass, vigor, oil content), fiber yield and/or quality, water use efficiency, fertilizer use efficiency, nitrogen use efficiency and/or abiotic stress tolerance traits, using conventional plant breeding techniques.
According to some embodiments of the invention, the plant expressing the exogenous polynucleotide(s) is grown under non-stress or normal conditions (e.g., biotic conditions and/or conditions with sufficient water, nutrients such as nitrogen and
2018271407 30 Nov 2018 fertilizer). Such conditions, which depend on the plant being grown, are known to those skilled in the art of agriculture, and are further, described hereinbelow.
According to some embodiments of the invention, the method further comprising growing the plant expressing the exogenous polynucleotide under the abiotic stress.
Non-limiting examples of abiotic stress conditions include, salinity, drought, water deprivation, excess of water (e.g., flood, waterlogging), etiolation, low temperature, high temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, atmospheric pollution and UV irradiation.
Thus, the invention encompasses plants exogenously expressing the polynucleotide(s), the nucleic acid constructs and/or polypeptide(s) of the invention. Once expressed within the plant cell or the entire plant, the level of the polypeptide encoded by the exogenous polynucleotide can be determined by methods well known in the art such as, activity assays, Western blots using antibodies capable of specifically binding the polypeptide, Enzyme-Linked Immuno Sorbent Assay (ELISA), radioimmuno-assays (RIA), immunohistochemistry, immunocytochemistry, immunofluorescence and the like.
Methods of determining the level in the plant of the RNA transcribed from the exogenous polynucleotide are well known in the art and include, for example, Northern blot analysis, reverse transcription polymerase chain reaction (RT-PCR) analysis (including quantitative, semi-quantitative or real-time RT-PCR) and RNA-zn situ hybridization.
The sequence information and annotations uncovered by the present teachings can be harnessed in favor of classical breeding. Thus, sub-sequence data of those polynucleotides described above, can be used as markers for marker assisted selection (MAS), in which a marker is used for indirect selection of a genetic determinant or determinants of a trait of interest (e.g., biomass, growth rate, oil content, fiber yield and/or quality, yield, abiotic stress tolerance, water use efficiency, nitrogen use efficiency and/or fertilizer use efficiency). Nucleic acid data of the present teachings (DNA or RNA sequence) may contain or be linked to polymorphic sites or genetic markers on the genome such as restriction fragment length polymorphism (RFLP), microsatellites and single nucleotide polymorphism (SNP), DNA fingerprinting (DFP), amplified fragment length polymorphism (AFLP), expression level polymorphism,
2018271407 30 Nov 2018 polymorphism of the encoded polypeptide and any other polymorphism at the DNA or RNA sequence.
Examples of marker assisted selections include, but are not limited to, selection for a morphological trait (e.g., a gene that affects form, coloration, male sterility or resistance such as the presence or absence of awn, leaf sheath coloration, height, grain color, aroma of rice); selection for a biochemical trait (e.g., a gene that encodes a protein that can be extracted and observed; for example, isozymes and storage proteins); selection for a biological trait (e.g., pathogen races or insect biotypes based on host pathogen or host parasite interaction can be used as a marker since the genetic constitution of an organism can affect its susceptibility to pathogens or parasites).
The polynucleotides and polypeptides described hereinabove can be used in a wide range of economical plants, in a safe and cost effective manner.
Plant lines exogenously expressing the polynucleotide or the polypeptide of the invention can be screened to identify those that show the greatest increase of the desired plant trait.
The effect of the transgene (the exogenous polynucleotide encoding the polypeptide) on abiotic stress tolerance can be determined using known methods such as detailed below and in the Examples section which follows.
Plant’s growth rate, biomass, yield and/or vigor - Plant vigor can be calculated by the increase in growth parameters such as leaf area, fiber length, rosette diameter, plant fresh weight and the like per time.
The growth rate can be measured using digital analysis of growing plants. For example, images of plants growing in greenhouse on plot basis can be captured every 3 days and the rosette area can be calculated by digital analysis. Rosette area growth is calculated using the difference of rosette area between days of sampling divided by the difference in days between samples.
Evaluation of growth rate can be also done by measuring plant biomass produced, rosette area, leaf size or root length per time (can be measured in cm2 per day of leaf area).
Relative growth area can be calculated using Formula IE
Formula II:
Relative growth rate area = Regression coefficient of area along time course
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Thus, the relative growth area rate is in units of 1/day and length growth rate is in units of 1/day.
Seed yield - Evaluation of the seed yield per plant can be done by measuring the amount (weight or size) or quantity (i.e., number) of dry seeds produced and harvested from 8-16 plants and divided by the number of plants.
For example, the total seeds from 8-16 plants can be collected, weighted using e.g., an analytical balance and the total weight can be divided by the number of plants. Seed yield per growing area can be calculated in the same manner while taking into account the growing area given to a single plant. Increase seed yield per growing area could be achieved by increasing seed yield per plant, and/or by increasing number of plants capable of growing in a given area.
Seed yield can be expressed as thousand kernel weight (1000-weight), which is extrapolated from the number of filled seeds counted and their total weight. Hence, an increased 1000-weight may result from an increased seed size and/or seed weight (e.g., increase in embryo size and/or endosperm size). For example, the weight of 1000 seeds can be determined as follows: seeds are scattered on a glass tray and a picture is taken. Each sample is weighted and then using the digital analysis, the number of seeds in each sample is calculated.
The 1000 seeds weight can be calculated using formula III:
Formula III:
1000 Seed Weight = number of seed in sample/ sample weight X 1000
The Harvest Index can be calculated using Formula IV
Formula IV:
Harvest Index = Average seed yield per plant/ Average dry weight
Since the transgenic plants of the invention have increased yield, it is likely that these plants exhibit an increased growth rate (during at least part of their life cycle), relative to the growth rate of corresponding wild type plants at a corresponding stage in their life cycle. The increased growth rate may be specific to one or more parts of a plant (including seeds), or may be throughout substantially the whole plant. A plant having an increased growth rate may also exhibit early flowering. Increased growth rate during the early stages in the life cycle of a plant may reflect enhanced vigor. The increase in growth rate may alter the harvest cycle (early maturing) of a plant allowing
2018271407 30 Nov 2018 plants to be sown later and/or harvested sooner than would otherwise be possible. If the growth rate is sufficiently increased, it may allow for the sowing of further seeds of the same plant species (for example sowing and harvesting of rice plants followed by sowing and harvesting of further rice plants all within one conventional growing period). Similarly, if the growth rate is sufficiently increased, it may allow for the sowing of further seeds of different plants species (for example the sowing and harvesting of rice plants followed by, for example, the sowing and optional harvesting of soybean, potato or any other suitable plant). Harvesting additional times from the same rootstock in the case of some plants may also be possible. Altering the harvest cycle of a plant may lead to an increase in annual biomass production per area (due to an increase in the number of times (say in a year) that any particular plant may be grown and harvested). An increase in growth rate may also allow for the cultivation of transgenic plants in a wider geographical area than their wild-type counterparts, since the territorial limitations for growing a crop are often determined by adverse environmental conditions either at the time of planting (early season) or at the time of harvesting (late season). Such adverse conditions may be avoided if the harvest cycle is shortened. The growth rate may be determined by deriving various parameters from growth curves, such parameters may be: T-Mid (the time taken for plants to reach 50% of their maximal size) and T-90 (time taken for plants to reach 90% of their maximal size).
According to some embodiments of the invention, increased yield of com may be manifested as one or more of the following: increase in the number of plants per growing area, increase in the number of ears per plant, increase in the number of rows per ear, number of kernels per ear row, kernel weight, thousand kernel weight (1000weight), ear length/diameter, increase oil content per kernel and increase starch content per kernel.
As mentioned, the increase of plant yield can be determined by various parameters. For example, increased yield of rice may be manifested by an increase in one or more of the following: number of plants per growing area, number of panicles per plant, number of spikelets per panicle, number of flowers per panicle, increase in the seed filling rate, increase in thousand kernel weight (1000-weight), increase oil content
2018271407 30 Nov 2018 per seed, increase starch content per seed, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture.
Similarly, increased yield of soybean may be manifested by an increase in one or more of the following: number of plants per growing area, number of pods per plant, number of seeds per pod, increase in the seed filling rate, increase in thousand seed weight (1000-weight), reduce pod shattering, increase oil content per seed, increase protein content per seed, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture.
Increased yield of canola may be manifested by an increase in one or more of the following: number of plants per growing area, number of pods per plant, number of seeds per pod, increase in the seed filling rate, increase in thousand seed weight (1000weight), reduce pod shattering, increase oil content per seed, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture.
Increased yield of cotton may be manifested by an increase in one or more of the following: number of plants per growing area, number of bolls per plant, number of seeds per boll, increase in the seed filling rate, increase in thousand seed weight (1000weight), increase oil content per seed, improve fiber length, fiber strength, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture.
Oil content - The oil content of a plant can be determined by extraction of the oil from the seed or the vegetative portion of the plant. Briefly, lipids (oil) can be removed from the plant (e.g., seed) by grinding the plant tissue in the presence of specific solvents (e.g., hexane or petroleum ether) and extracting the oil in a continuous extractor. Indirect oil content analysis can be carried out using various known methods such as Nuclear Magnetic Resonance (NMR) Spectroscopy, which measures the resonance energy absorbed by hydrogen atoms in the liquid state of the sample [See for example, Conway TF. and Earle FR., 1963, Journal of the American Oil Chemists' Society; Springer Berlin / Heidelberg, ISSN: 0003-021X (Print) 1558-9331 (Online)]; the Near Infrared (NI) Spectroscopy, which utilizes the absorption of near infrared energy (11002500 nm) by the sample; and a method described in WO/2001/023884, which is based on extracting oil a solvent, evaporating the solvent in a gas stream which forms oil
2018271407 30 Nov 2018 particles, and directing a light into the gas stream and oil particles which forms a detectable reflected light.
Fiber length can be measured using fibrograph. The fibrograph system was used to compute length in terms of Upper Half Mean length. The upper half mean (UHM) is the average length of longer half of the fiber distribution. The fibrograph measures length in span lengths at a given percentage point (Hypertext Transfer Protocol://World Wide Web (dot) cottoninc (dot) com/ClassificationofCotton/?Pg=4#Eength).
Abiotic stress tolerance - Transformed (i.e., expressing the transgene) and nontransformed (wild type) plants are exposed to an abiotic stress condition, such as water deprivation, suboptimal temperature (low temperature, high temperature), nutrient deficiency, nutrient excess, a salt stress condition, osmotic stress, high or low light conditions, heavy metal toxicity, anaerobiosis, atmospheric pollution and UV irradiation.
Salinity tolerance assay - Transgenic plants with tolerance to high salt concentrations are expected to exhibit better germination, seedling vigor or growth in high salt. Salt stress can be effected in many ways such as, for example, by irrigating the plants with a hyperosmotic solution, by cultivating the plants hydroponically in a hyperosmotic growth solution (e.g., Hoagland solution with added salt), or by culturing the plants in a hyperosmotic growth medium [e.g., 50 % Murashige-Skoog medium (MS medium) with added salt]. Since different plants vary considerably in their tolerance to salinity, the salt concentration in the irrigation water, growth solution, or growth medium can be adjusted according to the specific characteristics of the specific plant cultivar or variety, so as to inflict a mild or moderate effect on the physiology and/or morphology of the plants (for guidelines as to appropriate concentration see, Bernstein and Kafkafi, Root Growth Under Salinity Stress In: Plant Roots, The Hidden Half 3rd ed. Waisel Y, Eshel A and Kafkafi U. (editors) Marcel Dekker Inc., New York, 2002, and reference therein).
For example, a salinity tolerance test can be performed by irrigating plants at different developmental stages with increasing concentrations of sodium chloride (for example 50 mM, 100 rnM, 200 mM, 400 rnM NaCl) applied from the bottom and from above to ensure even dispersal of salt. Following exposure to the stress condition the plants are frequently monitored until substantial physiological and/or morphological effects appear in wild type plants. Thus, the external phenotypic appearance, degree of
2018271407 30 Nov 2018 chlorosis and overall success to reach maturity and yield progeny are compared between control and transgenic plants. Quantitative parameters of tolerance measured include, but are not limited to, the average wet and dry weight, growth rate, leaf size, leaf coverage (overall leaf area), the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher biomass than wild-type plants, are identified as abiotic stress tolerant plants.
Osmotic tolerance test - Osmotic stress assays (including sodium chloride and PEG assays) are conducted to determine if an osmotic stress phenotype was sodium chloride-specific or if it was a general osmotic stress related phenotype. Plants which are tolerant to osmotic stress may have more tolerance to drought and/or freezing. For salt and osmotic stress experiments, the medium is supplemented for example with 50 mM, 100 mM, 200 mM NaCl or 15 %, 20 % or 25 % PEG.
Drought tolerance assay - Soil-based drought screens are performed with plants overexpressing the polynucleotides detailed above. Seeds from control Arabidopsis plants, or other transgenic plants overexpressing the polypeptide of the invention are germinated and transferred to pots. Drought stress is obtained after irrigation is ceased. Transgenic and control plants are compared to each other when the majority of the control plants develop severe wilting. Plants are re-watered after obtaining a significant fraction of the control plants displaying a severe wilting. Plants are ranked comparing to controls for each of two criteria: tolerance to the drought conditions and recovery (survival) following re-watering.
Quantitative parameters of tolerance measured include, but are not limited to, the average wet and dry weight, growth rate, leaf size, leaf coverage (overall leaf area), the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher biomass than wild-type plants, are identified as drought stress tolerant plants
Cold stress tolerance - One way to analyze cold stress is as follows. Mature (25 day old) plants are transferred to 4 °C chambers for 1 or 2 weeks, with constitutive light. Later on plants are moved back to greenhouse. Two weeks later damages from chilling period, resulting in growth retardation and other phenotypes, are compared between
2018271407 30 Nov 2018 control and transgenic plants, by measuring plant weight (wet and dry), and by comparing growth rates measured as time to flowering, plant size, yield, and the like.
Heat stress tolerance - One way to measure heat stress tolerance is by exposing the plants to temperatures above 34 °C for a certain period. Plant tolerance is examined after transferring the plants back to 22 °C for recovery and evaluation after 5 days relative to internal controls (non-transgenic plants) or plants not exposed to neither cold or heat stress.
Germination tests - Germination tests compare the percentage of seeds from transgenic plants that could complete the germination process to the percentage of seeds from control plants that are treated in the same manner. Normal conditions are considered for example, incubations at 22 °C under 22-hour light 2-hour dark daily cycles. Evaluation of germination and seedling vigor is conducted between 4 and 14 days after planting. The basal media is 50 % MS medium (Murashige and Skoog, 1962 Plant Physiology 15, 473-497).
Germination is checked also at unfavorable conditions such as cold (incubating at temperatures lower than 10 °C instead of 22 °C) or using seed inhibition solutions that contain high concentrations of an osmolyte such as sorbitol (at concentrations of 50 rnM, 100 rnM, 200 rnM, 300 mM, 500 rnM, and up to 1000 mM) or applying increasing concentrations of salt (of 50 mM, 100 rnM, 200 mM, 300 mM, 500 mM NaCl).
Water use efficiency (WUE) - can be determined as the biomass produced per unit transpiration. To analyze WUE, leaf relative water content can be measured in control and transgenic plants. Fresh weight (FW) is immediately recorded; then leaves are soaked for 8 hours in distilled water at room temperature in the dark, and the turgid weight (TW) is recorded. Total dry weight (DW) is recorded after drying the leaves at 60 °C to a constant weight. Relative water content (RWC) is calculated according to the following Formula V:
Formula V
RWC = (FW - DW/TW - DW) x 100
Plants that maintain high relative water content (RWC) compared to control lines are considered more tolerant to drought than those exhibiting reduced relative water content. A non limiting example in Arabidopsis is when water uptake by roots matches water loss by transpiration from leaves. Under these circumstances the plant is
2018271407 30 Nov 2018 determined to be under equilibrium and the RWC is about 0.9. When the RWC of transgenic plants decreases significantly less as compared to wild type plants, the transgenic plants are considered more tolerant to drought [Gaxiola et al. PNAS September 25, 2001 vol. 98 no. 20 11444-11449],
Fertilizer use efficiency - To analyze whether the transgenic plants are more responsive to fertilizers, plants are grown in agar plates or pots containing growth media with a limited amount of fertilizer (e.g., nitrogen, phosphate, potassium), essentially as described in Yanagisawa et al (Proc Natl Acad Sci USA. 2004; 101:7833-8). The plants are analyzed for their overall size, time to flowering, yield, protein content of shoot, grain and/or seed production. The parameters checked are the overall size of the mature plant, its wet and dry weight, the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Other parameters that may be tested are: the chlorophyll content of leaves (as nitrogen plant status and the degree of leaf greenness is highly correlated), amino acid and the total protein content of the seeds or other plant parts such as leaves or shoots, oil content, etc. In this way, nitrogen use efficiency (NUE), phosphate use efficiency (PUE) and potassium use efficiency (KUE) are assessed, checking the ability of the transgenic plants which express the exogenous polynucleotide of the invention to thrive under nutrient restraining conditions. For example, to analyze whether the transgenic Arabidopsis plants are more responsive to phosphate, plants are grown in 250 rnM (phosphate deficient conditions) or 1 mM (optimal phosphate concentration). To test the potassium use efficiency, Arabidopsis plants which express the exogenous polynucleotide of the invention are grown in 0.03 rnM potassium (potassium deficient conditions) or 3 rnM potassium (optimal potassium concentration) essentially as described by Watson et al. Plant Physiol. (1996) 111: 1077-1 083.
Nitrogen determination - The procedure for N (nitrogen) concentration determination in the structural parts of the plants involves the potassium persulfate digestion method to convert organic N to NO3’ (Purcell and King 1996 Argon. J. 88:111113, the modified Cd’ mediated reduction of NO3’ to NO2’ (Vodovotz 1996 Biotechniques 20:390-394) and the measurement of nitrite by the Griess assay (Vodovotz 1996, supra). The absorbance values are measured at 550 nm against a
2018271407 30 Nov 2018 standard curve of NaNCh. The procedure is described in details in Samonte et al. 2006 Agron. J. 98:168-176.
Nitrogen use efficiency - To analyze whether the transgenic Arabidopsis plants are more responsive to nitrogen plant are grown in 0.75- 1.5 mM (nitrogen deficient conditions) or 6-10 mM (optimal nitrogen concentration). Plants are allowed to grow for additional 20 days or until seed production. The plants are then analyzed for their overall size, time to flowering, yield, protein content of shoot and/or grain/ seed production. The parameters checked can be the overall size of the plant, wet and dry weight, the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Other parameters that may be tested are: the chlorophyll content of leaves (as nitrogen plant status and the degree of leaf greenness is highly correlated), amino acid and the total protein content of the seeds or other plant parts such as leaves or shoots and oil content. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher measured parameters levels than wildtype plants, are identified as nitrogen use efficient plants.
Nitrogen use efficiency assay using plantlets - The assay is done according to Yanagisawa-S. et al. with minor modifications (“Metabolic engineering with Dofl transcription factor in plants: Improved nitrogen assimilation and growth under lownitrogen conditions” Proc. Natl. Acad. Sci. USA 101, 7833-7838). Briefly, transgenic plants which are grown for 7-10 days in 0.5 x MS [Murashige-Skoog] supplemented with a selection agent are transferred to two nitrogen-limiting conditions: MS media in which the combined nitrogen concentration (NH4NO3 and KNO3) was 0.2 mM or 0.05 mM. Plants are allowed to grow for additional 30-40 days and then photographed, individually removed from the Agar (the shoot without the roots) and immediately weighed (fresh weight) for later statistical analysis. Constructs for which only T1 seeds are available are sown on selective media and at least 25 seedlings (each one representing an independent transformation event) are carefully transferred to the nitrogen-limiting media. For constructs for which T2 seeds are available, different transformation events are analyzed. Usually, 25 randomly selected plants from each event are transferred to the nitrogen-limiting media allowed to grow for 3-4 additional weeks and individually weighed at the end of that period. Transgenic plants are compared to control plants grown in parallel under the same conditions. Mock2018271407 30 Nov 2018 transgenic plants expressing the uidA reporter gene (GUS) under the same promoter are used as control.
Grain protein concentration - Grain protein content (g grain protein m’2) is estimated as the product of the mass of grain N (g grain N m’2) multiplied by the N/protein conversion ratio of k-5.13 (Mosse 1990, supra). The grain protein concentration is estimated as the ratio of grain protein content per unit mass of the grain (g grain protein kg’1 grain).
Thus, the present invention is of high agricultural value for promoting the yield, biomass, growth rate, vigor, water use efficiency, fertilizer use efficiency, nitrogen use efficiency and abiotic stress tolerance of commercially desired crops (e.g., biomass of vegetative organ such as poplar wood, or reproductive organ such as number of seeds or seed biomass).
As used herein the term “about” refers to + 10 %.
The terms comprises, comprising, includes, including, “having” and their conjugates mean including but not limited to.
The term “consisting of means “including and limited to”.
The term consisting essentially of means that the composition, method or structure may include additional ingredients, steps and/or parts, but only if the additional ingredients, steps and/or parts do not materially alter the basic and novel characteristics of the claimed composition, method or structure.
As used herein, the singular form a, an and the include plural references unless the context clearly dictates otherwise. For example, the term a compound or at least one compound may include a plurality of compounds, including mixtures thereof.
Throughout this application, various embodiments of this invention may be presented in a range format. It should be understood that the description in range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the invention. Accordingly, the description of a range should be considered to have specifically disclosed all the possible subranges as well as individual numerical values within that range. For example, description of a range such as from 1 to 6 should be considered to have specifically disclosed subranges such as
2018271407 30 Nov 2018 from 1 to 3, from 1 to 4, from 1 to 5, from 2 to 4, from 2 to 6, from 3 to 6 etc., as well as individual numbers within that range, for example, 1, 2, 3, 4, 5, and 6. This applies regardless of the breadth of the range.
Whenever a numerical range is indicated herein, it is meant to include any cited numeral (fractional or integral) within the indicated range. The phrases “ranging/ranges between” a first indicate number and a second indicate number and “ranging/ranges from” a first indicate number “to” a second indicate number are used herein interchangeably and are meant to include the first and second indicated numbers and all the fractional and integral numerals therebetween.
As used herein the term method refers to manners, means, techniques and procedures for accomplishing a given task including, but not limited to, those manners, means, techniques and procedures either known to, or readily developed from known manners, means, techniques and procedures by practitioners of the chemical, pharmacological, biological, biochemical and medical arts.
It is appreciated that certain features of the invention, which are, for clarity, described in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of the invention, which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable subcombination or as suitable in any other described embodiment of the invention. Certain features described in the context of various embodiments are not to be considered essential features of those embodiments, unless the embodiment is inoperative without those elements.
Various embodiments and aspects of the present invention as delineated hereinabove and as claimed in the claims section below find experimental support in the following examples.
EXAMPLES
Reference is now made to the following examples, which together with the above descriptions illustrate some embodiments of the invention in a non limiting fashion.
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Generally, the nomenclature used herein and the laboratory procedures utilized in the present invention include molecular, biochemical, microbiological and recombinant DNA techniques. Such techniques are thoroughly explained in the literature. See, for example, Molecular Cloning: A laboratory Manual Sambrook et al., (1989); Current Protocols in Molecular Biology Volumes I-III Ausubel, R. M., ed. (1994); Ausubel et al., Current Protocols in Molecular Biology, John Wiley and Sons, Baltimore, Maryland (1989); Perbal, A Practical Guide to Molecular Cloning, John Wiley & Sons, New York (1988); Watson et al., Recombinant DNA, Scientific American Books, New York; Birren et al. (eds) Genome Analysis: A Laboratory Manual Series, Vols. 1-4, Cold Spring Harbor Laboratory Press, New York (1998); methodologies as set forth in U.S. Pat. Nos. 4,666,828; 4,683,202; 4,801,531; 5,192,659 and 5,272,057; Cell Biology: A Laboratory Handbook, Volumes I-III Cellis, J. E., ed. (1994); Current Protocols in Immunology Volumes I-III Coligan J. E., ed. (1994); Stites et al. (eds), Basic and Clinical Immunology (8th Edition), Appleton & Lange, Norwalk, CT (1994); Mishell and Shiigi (eds), Selected Methods in Cellular Immunology, W. H. Freeman and Co., New York (1980); available immunoassays are extensively described in the patent and scientific literature, see, for example, U.S. Pat. Nos. 3,791,932; 3,839,153; 3,850,752; 3,850,578; 3,853,987; 3,867,517; 3,879,262; 3,901,654; 3,935,074; 3,984,533; 3,996,345; 4,034,074; 4,098,876; 4,879,219; 5,011,771 and 5,281,521; Oligonucleotide Synthesis Gait, M. J., ed. (1984); “Nucleic Acid Hybridization Hames, B. D., and Higgins S. J., eds. (1985); Transcription and Translation Hames, B. D., and Higgins S. J., Eds. (1984); Animal Cell Culture Freshney, R. 1., ed. (1986); Immobilized Cells and Enzymes IRL Press, (1986); A Practical Guide to Molecular Cloning Perbal, B., (1984) and Methods in Enzymology Vol. 1-317, Academic Press; PCR Protocols: A Guide To Methods And Applications, Academic Press, San Diego, CA (1990); Marshak et al., Strategies for Protein Purification and Characterization - A Laboratory Course Manual CSHL Press (1996); all of which are incorporated by reference as if fully set forth herein. Other general references are provided throughout this document. The procedures therein are believed to be well known in the art and are provided for the convenience of the reader. All the information contained therein is incorporated herein by reference.
2018271407 30 Nov 2018
EXAMPLE 1
IDENTIFYING GENES WHICH IMPROVE YIELD AND AGRONOMICAL IMPORTANT TRAITS IN PLANTS
The present inventors have identified polynucleotides which expression thereof in plants can increase yield, fiber yield, fiber quality, growth rate, vigor, biomass, growth rate, oil content, abiotic stress tolerance (ABST), nitrogen use efficiency (NUE), water use efficiency (WUE) and fertilizer use efficiency (FUE) of a plant, as follows.
All nucleotide sequence datasets used here were originated from publicly available databases or from performing sequencing using the Solexa technology (e.g. Barley and Sorghum). Sequence data from 100 different plant species was introduced into a single, comprehensive database. Other information on gene expression, protein annotation, enzymes and pathways were also incorporated. Major databases used include:
• Genomes o Arabidopsis genome [TAIR genome version 6 (Hypertext Transfer Protocol ://World Wide Web (dot) arabidopsis (dot) org/)] o Rice genome [IRGSP build 4.0 (Hypertext Transfer Protocol://rgp (dot) dna (dot) affrc (dot) go (dot) jp/IRGSP/)].
o Poplar [Populus trichocarpa release 1.1 from JGI (assembly release vl .0) (Hypertext Transfer Protocol://World Wide Web (dot) genome (dot) jgi-psf (dot) org/)] o Brachypodium [JGI 4x assembly, Hypertext Transfer Protocol://World Wide Web (dot) brachpodium (dot) org)] o Soybean [DOE-JGI SCP, version GlymaO (Hypertext Transfer Protocol://World Wide Web (dot) phytozome (dot) net/)] o Grape [French-Italian Public Consortium for Grapevine Genome Characterization grapevine genome (Hypertext Transfer Protocol:// World Wide Web (dot) genoscope (dot) cns (dot) fr /)] o Castobean [TIGR/J Craig Venter Institute 4x assembly [(Hypertext Transfer Protocol ://msc (dot) jcvi (dot) org/r communis] o Sorghum [DOE-JGI SCP, version Sbil [Hypertext Transfer Protocol://World Wide Web (dot) phytozome (dot) net/)].
2018271407 30 Nov 2018 o Partially assembled genome of Maize [Hypertext Transfer Protocol ://maizesequence (dot) org/] • Expressed EST and mRNA sequences were extracted from the following databases:
o GeneBank versions 154, 157, 160, 161, 164, 165, 166 and 168 (Hypertext Transfer Protocol://World Wide Web (dot) ncbi (dot) nlm (dot) nih (dot) gov/dbEST/) o RefSeq (Hypertext Transfer Protocol://World Wide Web (dot) ncbi (dot) nlm (dot) nih (dot) gov/RefSeq/).
o TAIR (Hypertext Transfer Protocol://World Wide Web (dot) arabidopsis (dot) org/).
• Protein and pathway databases o Uniprot [Hypertext Transfer Protocol://World Wide Web (dot) uniprot (dot) org/].
o AraCyc [Hypertext Transfer Protocol ://World Wide Web (dot) arabidopsis (dot) org/biocyc/index (dot) jsp], o ENZYME [Hypertext Transfer Protocol ://expasy (dot) org/enzyme/].
• Microarray datasets were downloaded from:
o GEO (Hypertext Transfer Protocol://World Wide Web.ncbi.nlm.nih.gov/geo/) o TAIR (Hypertext Transfer Protocol://World Wide Web.arabidopsis.org/).
o Proprietary microarray data (W02008/122980).
• QTL and SNPs information o Gramene [Hypertext Transfer Protocol://World Wide Web (dot) gramene (dot) org/qtl/].
o Panzea [Hypertext Transfer Protocol://World Wide Web (dot) panzea (dot) org/index (dot) html].
Database Assembly - was performed to build a wide, rich, reliable annotated and easy to analyze database comprised of publicly available genomic mRNA, ESTs DNA sequences, data from various crops as well as gene expression, protein annotation and pathway data QTLs, and other relevant information.
Database assembly is comprised of a toolbox of gene refining, structuring, annotation and analysis tools enabling to construct a tailored database for each gene discovery project. Gene refining and structuring tools enable to reliably detect splice variants and antisense transcripts, generating understanding of various potential phenotypic outcomes of a single gene. The capabilities of the LEADS platform of
2018271407 30 Nov 2018
Compugen LTD for analyzing human genome have been confirmed and accepted by the scientific community [see e.g., Widespread Antisense Transcription, Yelin, et al. (2003) Nature Biotechnology 21, 379-85; Splicing of Alu Sequences, Lev-Maor, et al. (2003) Science 300 (5623), 1288-91; “Computational analysis of alternative splicing using EST tissue information”, Xie H et al. Genomics 2002], and have been proven most efficient in plant genomics as well.
EST clustering and gene assembly - For gene clustering and assembly of organisms with available genome sequence data (arabidopsis, rice, castorbean, grape, brachypodium, poplar, soybean, sorghum) the genomic LEADS version (GANG) was employed. This tool allows most accurate clustering of ESTs and mRNA sequences on genome, and predicts gene structure as well as alternative splicing events and anti-sense transcription.
For organisms with no available full genome sequence data, expressed LEADS clustering software was applied.
Gene annotation - Predicted genes and proteins were annotated as follows:
Blast search [Hypertext Transfer Protocol://blast (dot) ncbi (dot) nlm (dot) nih (dot) gov /Blast (dot) cgi] against all plant UniProt [Hypertext Transfer Protocol://World Wide Web (dot) uniprot (dot) org/] sequences was performed. Open reading frames of each putative transcript were analyzed and longest ORF with higher number of homologues was selected as predicted protein of the transcript. The predicted proteins were analyzed by InterPro [Hypertext Transfer Protocol ://World Wide Web (dot) ebi (dot) ac (dot) uk/interpro/].
Blast against proteins from AraCyc and ENZYME databases was used to map the predicted transcripts to AraCyc pathways.
Predicted proteins from different species were compared using blast algorithm [Hypertext Transfer Protocol://World Wide Web (dot) ncbi (dot) nlm (dot) nih (dot) gov /Blast (dot) cgi] to validate the accuracy of the predicted protein sequence, and for efficient detection of ortho logs.
Gene expression profiling - Several data sources were exploited for gene expression profiling, namely microarray data and digital expression profile (see below). According to gene expression profile, a correlation analysis was performed to identify
2018271407 30 Nov 2018 genes which are co-regulated under different development stages and environmental conditions and associated with different phenotypes.
Publicly available microarray datasets were downloaded from TAIR and NCBI GEO sites, renormalized, and integrated into the database. Expression profiling is one of the most important resource data for identifying genes important for yield.
A digital expression profile summary was compiled for each cluster according to all keywords included in the sequence records comprising the cluster. Digital expression, also known as electronic Northern Blot, is a tool that displays virtual expression profile based on the EST sequences forming the gene cluster. The tool provides the expression profile of a cluster in terms of plant anatomy (e.g., the tissue/organ in which the gene is expressed), developmental stage (the developmental stages at which a gene can be found) and profile of treatment (provides the physiological conditions under which a gene is expressed such as drought, cold, pathogen infection, etc). Given a random distribution of ESTs in the different clusters, the digital expression provides a probability value that describes the probability of a cluster having a total of N ESTs to contain X ESTs from a certain collection of libraries. For the probability calculations, the following is taken into consideration: a) the number of ESTs in the cluster, b) the number of ESTs of the implicated and related libraries, c) the overall number of ESTs available representing the species. Thereby clusters with low probability values are highly enriched with ESTs from the group of libraries of interest indicating a specialized expression.
Recently, the accuracy of this system was demonstrated by Portnoy et al., 2009 (Analysis Of The Melon Fruit Transcriptome Based On 454 Pyrosequencing) in: Plant & Animal Genomes XVII Conference, San Diego, CA. Transcriptomic analysis, based on relative EST abundance in data was performed by 454 pyrosequencing of cDNA representing mRNA of the melon fruit. Fourteen double strand cDNA samples obtained from two genotypes, two fruit tissues (flesh and rind) and four developmental stages were sequenced. GS FLX pyrosequencing (Roche/454 Life Sciences) of nonnormalized and purified cDNA samples yielded 1,150,657 expressed sequence tags, that assembled into 67,477 unigenes (32,357 singletons and 35,120 contigs). Analysis of the data obtained against the Cucurbit Genomics Database [Hypertext Transfer Protocol://World Wide Web (dot) icugi (dot) org/] confirmed the accuracy of the
2018271407 30 Nov 2018 sequencing and assembly. Expression patterns of selected genes fitted well their qRTPCR data.
To further investigate and identify putative ortho logs of the yield, growth rate, vigor, biomass, growth rate, abiotic stress tolerance (ABST), nitrogen use efficiency (NUE) and fertilizer use efficiency (FUE) genes from other plant species, expression data was analyzed and the EST libraries were classified using a fixed vocabulary of custom terms such as developmental stages (e.g., genes showing similar expression profile through development with up regulation at specific stage, such as at the seed filling stage) and/or plant organ (e.g., genes showing similar expression profile across their organs with up regulation at specific organs such as seed). The annotations from all the ESTs clustered to a gene were analyzed statistically by comparing their frequency in the cluster versus their abundance in the database, allowing to construct a numeric and graphic expression profile of that gene, which is termed “digital expression”. The rationale of using these two complementary methods with methods of phenotypic association studies of QTLs, SNPs and phenotype expression correlation is based on the assumption that true orthologs are likely to retain identical function over evolutionary time. These methods provide different sets of indications on function similarities between two homologous genes, similarities in the sequence level - identical amino acids in the protein domains and similarity in expression profiles.
Overall, 239 genes were identified to have a major impact on plant yield, growth rate, vigor, biomass, growth rate, oil content, abiotic stress tolerance, nitrogen use efficiency, water use efficiency and fertilizer use efficiency when expression thereof is increased in plants. The identified genes, their curated polynucleotide and polypeptide sequences, as well as their updated sequences according to Genbank database are summarized in Table 1, hereinbelow.
Table 1
Identified genes for increasing yield, growth rate, vigor, biomass, growth rate, oil content, abiotic stress tolerance, nitrogen use efficiency, water use efficiency and fertilizer use efficiency of a plant
Gene Name Cluster Name Organism Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM1 rice|gbl57.2|AU058137 rice 1 240
LYM2 rice|gb!57.2|AA750140 rice 2 241
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Gene Name Cluster Name Organism Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM3 rice|gbl57.2|AU032158 rice 3 242
LYM4 rice|gbl57.2 |AU082697 rice 4 243
LYM5 rice|gbl57.2|AW155107 rice 5 244
LYM6 rice|gbl57.2|AW155114 rice 6 245
LYM7 rice|gbl57.2|BE039635 rice 7 246
LYM8 rice|gbl57.2|BE040233 rice 8 247
LYM9 rice|gbl57.2|BE040806 rice 9 248
LYM10 rice|gbl57.2|BE230434 rice 10 249
LYM12 rice|gbl 57.2|BI807331 rice 11 250
LYM13 rice|gbl57.2|BM037844 rice 12 251
LYM14 rice|gbl57.2|BM038118 rice 13 252
LYM15 rice|gbl57.2|CA761603 rice 14 253
LYM16 rice|gbl57.2|U38074 rice 15 254
LYM17 rice|gbl57.2|AU033038 rice 16 255
LYM19 rice|gbl57.2|BE040457 rice 17 256
LYM20 rice|gbl57.2|BF430570 rice 18 257
LYM21 rice|gbl57.2|BI805660 rice 19 258
LYM22 rice|gbl57.2|BI808357 rice 20 259
LYM23 ricegbl57.2 AA749984 rice 21 260
LYM24 rice|gbl57.2|AF050674 rice 22 261
LYM26 barley|gbl57.3|AJ431915 barley 23 262
LYM30 rice|gbl57.2|AK100743 rice 24 263
LYM31 rice|gbl57.2|AK101734 rice 25 264
LYM32 rice|gbl57.2|AK106380 rice 26 265
LYM34 ricegbl57.2 AK107902 rice 27 266
LYM35 rice|gbl57.2|AK107934 rice 28 267
LYM36 rice|gbl57.2|AK108674 rice 29 268
LYM37 ricegbl57.2 AK111353 rice 30 269
LYM38 barley|gbl57.3|AL508889 barley 31 270
LYM40 rice|gbl57.2|AU082329 rice 32 271
LYM41 rice|gbl57.2|AU096202 rice 33 272
LYM42 ricegbl57.2 AU097348 rice 34 273
LYM43 ricegbl57.2 AU101198 rice 35 274
LYM44 ricegbl57.2 AU172519 rice 36 275
LYM49 maize|gbl64|AW331061 maize 37
LYM51 barley|gbl57.3|BE412472 barley 38 276
LYM52 barley|gbl57.3|BE422132 barley 39 277
LYM53 maize|gbl64|BE511332 maize 40 278
LYM56 barley|gbl57.3|BF625411 barley 41 279
LYM57 rice|gbl57.2|BI809626 rice 42 280
LYM59 barley gbl57.3 BI952737 barley 43
LYM61 maize|gbl64|BM079029 maize 44 281
LYM62 maize|gbl64|BM348041 maize 45 282
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Gene Name Cluster Name Organism Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM66 barley gbl57.3 BU974981 barley 46 283
LYM67 rice gbl57.2 CA763759 rice 47 284
LYM68 rice gbl57.2 CA767240 rice 48 285
LYM69 rice gbl57.2 CA997856 rice 49 286
LYM73 rice|gbl57.2|CB683204 rice 50 287
LYM74 maize|gbl64|CF075309 maize 51 288
LYM79 maize|gbl64|AW191191 maize 52 289
LYM82 barley gbl57.3 AL507706 barley 53 290
LYM83 barley|gbl57.3|BI952401 barley 54 291
LYM84 barley|gbl57.3|BF622069 barley 55 292
LYM86 rice|gbl57.2|AU031857 rice 56 293
LYM88 arabidopsis gb 165 AT2G3 775 0 arabidopsis 57 294
LYM89 arabidopsis gbl 65 AT5G6749 0 arabidopsis 58 295
LYM90 barley gbl57.3 AV927104 barley 59 296
LYM91 barley|gbl57.3|BE060518 barley 60 297
LYM93 barley gbl57.3 BI955752 barley 61 298
LYM99 barley gbl57.3 BI947870 barley 62 299
LYM95 barley gbl57.3 BI959932 barley 63 300
LYM100 barley|gbl57.3|AV912944 barley 64 301
LYM102 rice|gbl57.2|CA760613 rice 65 302
LYM103 maize|gbl64|CD963970 maize 66 303
LYM105 barley gbl57.3 AL507901 barley 67 304
LYM106 barley|gbl57.3|BI954225 barley 68 305
LYM110 maize|gbl64|BE552618 maize 69 306
LYM111 maize|gbl64|AW053159 maize 70 307
LYM119 maize|gbl64|AW498426 maize 71 308
LYM120 rice gbl57.3 BI795677 rice 72 309
LYM122 rice|gbl 57.3 |BI118816 rice 73 310
LYM125 rice|gbl57.2|AK108452 rice 74 311
LYM126 rice|gbl57.2|AK108969 rice 75 312
LYM127 ricegbl57.2 AU172589 rice 76 313
LYM128 ricegbl57.2 AU172667 rice 77 314
LYM129 rice|gbl57.3|BE230206 rice 78 315
LYM130 rice|gbl57.3|BF430580 rice 79 316
LYM131 rice gbl57.3 CF309827 rice 80 317
LYM132 rice|gbl57.3|BE229876 rice 81 318
LYM134 rice|gbl57.2|BI809462 rice 82 319
LYM136 rice|gbl57.2|AU093861 rice 83 320
LYM137 barley gbl57.3 AL501911 barley 84 321
LYM140 barley|gbl57.3|BF623993 barley 85 322
LYM141 rice gbl57.2 CA761074 rice 86 323
LYM142 barley|gbl57.3|CB866504 barley 87 324
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Gene Name Cluster Name Organism Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM143 rice|gbl57.3|BI306405 rice 88 325
LYM144 rice|gbl57.2|BM420331 rice 89 326
LYM145 rice gbl57.2AK073109 rice 90 327
LYM148 barley|gbl57.3|AL500574 barley 91 328
LYM149 barley gbl57.3 AL509762 barley 92 329
LYM152 arabidopsis gbl65AT5G5729 0 arabidopsis 93 330
LYM153 rice|gbl57.3|AU066244 rice 94 331
LYM156 barley|gbl57.3|BE421631 barley 95 332
LYM157 barley|gbl57.3|BE454937 barley 96 333
LYM159 barley|gbl57.3|BF259387 barley 97 334
LYM160 barley gbl57.3 BG300909 barley 98 335
LYM161 barley|gbl57.3|BG344928 barley 99 336
LYM162 maize|gbl64|BG462213 maize 100 337
LYM164 rice|gbl57.3|BI805693 rice 101 338
LYM165 maize|gbl64|CD439546 maize 102 339
LYM166 wheatgbl64 CJ547519 wheat 103 340
LYM170 rice|gbl57.2|AU057403 rice 104 341
LYM172 rice|gbl57.2|BE229411 rice 105 342
LYM173 rice|gbl57.3|AA751564 rice 106 343
LYM174 sorghum gbl61.crpAW28430 3 sorghum 107 344
LYM175 rice|gbl57.2|AK060073 rice 108 345
LYM176 rice|gbl57.2|BI305434 rice 109 346
LYM178 barley|gbl57.3|BE421520 barley 110 347
LYM179 maize|gbl64|BE051631 maize 111 348
LYM107 maize|gbl64|AW497895 maize 112 349
LYM109 maize|gbl69.2|CD984002 maize 113 350
LYM112 maize|gbl64|CF038223 maize 114 351
LYM113 maize|gbl64|AW257902 maize 115 352
LYM115 maize|gbl64|CF646135 maize 116 353
LYM116 maize|gbl64|AI964572 maize 117 354
LYM117 maize|gbl64|AI739834 maize 118 355
LYM118 maize|gbl64|CO518843 maize 119 356
LYM121 rice|gbl57.2|AK103124 rice 120 357
LYM123 rice|gbl57.2|AI978352 rice 121 358
LYM135 rice|gbl57.2|AU101278 rice 122 359
LYM138 rice|gbl57.2|BI805497 rice 123 360
LYM146 maize|gbl64|AI770878 maize 124 361
LYM147 maize|gbl64|AI901828 maize 125 362
LYM154 barley|gbl57.3|AV836282 barley 126 363
LYM155 barley|gbl57.3|BE412535 barley 127 364
LYM180 barley|gbl57.3|AJ476822 barley 128 365
LYM181 barley|gbl57.3|AL450622 barley 129 366
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Gene Name Cluster Name Organism Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM182 barley|gbl57.3|AL507048 barley 130 367
LYM184 barley|gbl57.3|AV833284 barley 131 368
LYM185 barley gbl57.3 AV833969 barley 132 369
LYM186 barley gbl57.3 AV834971 barley 133 370
LYM188 barley|gbl57.3|BE438660 barley 134 371
LYM189 barley|gbl57.3|BF256192 barley 135 372
LYM192 barley|gbl57.3|BF627356 barley 136 373
LYM193 barley|gbl57.3|CB858276 barley 137 374
LYM194 barley gbl57.3 CB860975 barley 138 375
LYM196 maize|gbl64|AI372352 maize 139 376
LYM197 maize|gbl64|AI444704 maize 140 377
LYM198 maize|gbl64|AI491323 maize 141 378
LYM201 maize|gbl64|AI600670 maize 142 379
LYM203 maize|gbl64|AI629486 maize 143 380
LYM204 maize|gbl64|AI649791 maize 144 381
LYM206 maize |gb 1641AI691210 maize 145 382
LYM207 maize|gbl64|AI920398 maize 146 383
LYM208 maize |gb 1641AI941717 maize 147 384
LYM212 maize|gbl64|AW000408 maize 148 385
LYM213 maize|gbl64|AW000438 maize 149 386
LYM215 maize|gbl64|AW498464 maize 150 387
LYM217 maize|gbl64|BE129928 maize 151 388
LYM219 maize|gbl64|BE238495 maize 152 389
LYM220 maize|gbl64|BG842756 maize 153 390
LYM221 maize|gbl64|BI502603 maize 154 391
LYM223 maize|gbl64|BM338985 maize 155 392
LYM224 maize|gbl64|CA401086 maize 156 393
LYM227 maize|gbl64|EC877515 maize 157 394
LYM228 maize|gbl64|EC892599 maize 158 395
LYM232 rice|gbl57.3|AA750121 rice 159 396
LYM233 rice|gbl57.3|AA750182 rice 160 397
LYM234 rice|gbl57.3|AA752388 rice 161 398
LYM236 rice|gbl57.3|AF155334 rice 162 399
LYM238 rice|gbl57.3|AK066551 rice 163 400
LYM239 rice|gbl57.3|AU068651 rice 164 401
LYM240 rice|gbl57.3|AU069131 rice 165 402
LYM241 rice gbl57.3 AU162998 rice 166 403
LYM242 rice gbl57.3 BE039711 rice 167 404
LYM243 rice|gbl57.3|BE228686 rice 168 405
LYM245 rice|gbl57.3|BF430828 rice 169 406
LYM248 rice|gbl57.3|BQ906571 rice 170 407
LYM249 rice gbl57.3 C25903 rice 171 408
LYM250 rice gbl57.3 CA759158 rice 172 409
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Gene Name Cluster Name Organism Polynucleotide SEQIDNO: Polypeptide SEQ ID NO:
LYM251 rice gbl57.3 CA759241 rice 173 410
LYM252 rice gbl57.3 CA759659 rice 174 411
LYM254 rice gbl57.3 CB657978 rice 175 412
LYM255 rice|gbl57.3|CF330913 rice 176 413
LYM260 rice|gbl57.3|CI581223 rice 177 414
LYM261 rice|gbl57.3|D41406 rice 178 415
LYM263 sorghum|gb 161 ,crp| AI622410 sorghum 179 416
LYM183 barley gbl57.3 AL509795 barley 180 417
LYM256 rice gbl57.3 CI004090 rice 181 418
LYM200 maize|gbl64|AI5 86731 maize 182 419
LYM267 maize|gbl64|AW231521 maize 183 420
LYM268 rice|gbl57.2|BI800054 rice 184 421
LYM270 maize|gbl64|AI670268 maize 185 422
LYM271 maize|gbl64|CF637107 maize 186 423
LYM272 rice|gbl57.2|CA761620 rice 187 424
LYM273 rice|gbl57.2|BM418692 rice 188 425
LYM274 rice|gbl57.2|AK073201 rice 189 426
LYM277 rice|gbl57.2|BM038097 rice 190 427
LYM278 barley|gbl57.3|BLYTRAA barley 191 428
LYM283 rice|gbl57.2|D23167 rice 192 429
LYM284 rice|gbl57.2|BI306331 rice 193 430
LYM285 rice|gbl57.2|CB631346 rice 194 431
LYM287 rice|gbl57.2|AK102063 rice 195 432
LYM288 rice|gbl57.2|BE040927 rice 196 433
LYM289 barley gbl57.3 AV925962 barley 197 434
LYM290 maize|gbl64|AA979729 maize 198 435
LYM291 rice gbl57.2 BM037976 rice 199 436
LYM293 rice|gbl57.2|AK059161 rice 200 437
LYM38 barley|gbl57.3|AL508889 barley 201 438
LYM42 ricegbl57.2 AU097348 rice 202 439
LYM51 barley|gbl57.3|BE412472 barley 203 276
LYM52 barley|gbl57.3|BE422132 barley 204 277
LYM56 barley|gbl57.3|BF625411 barley 205 279
LYM59 barley gbl57.3 BI952737 barley 206
LYM66 barley gbl57.3 BU974981 barley 207 440
LYM79 maize|gbl64|AW191191 maize 208 441
LYM83 barley|gbl57.3|BI952401 barley 209 442
LYM90 barley gbl57.3 AV927104 barley 210 296
LYM99 barley gbl57.3 BI947870 barley 211 299
LYM95 barley gbl57.3 BI959932 barley 212 443
LYM148 barley|gbl57.3|AL500574 barley 213 328
LYM159 barley|gbl57.3|BF259387 barley 214 334
LYM161 barley|gbl57.3|BG344928 barley 215 444
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Gene Name Cluster Name Organism Polynucleotide SEQIDNO: Polypeptide SEQ ID NO:
LYM166 wheatgbl64 CJ547519 wheat 216 445
LYM175 rice|gbl57.2|AK060073 rice 217 446
LYM109 maize|gbl64|CD984002 maize 218 447
LYM112 maize|gbl64|CF038223 maize 219 448
LYM116 maize|gbl64|AI964572 maize 220 354
LYM117 maize|gbl64|AI739834 maize 221 449
LYM154 barley|gbl57.3|AV836282 barley 222 450
LYM155 barley|gbl57.3|BE412535 barley 223 451
LYM180 barley|gbl57.3|AJ476822 barley 224 452
LYM181 barley|gbl57.3|AL450622 barley 225 453
LYM184 barley|gbl57.3|AV833284 barley 226 454
LYM185 barley gbl57.3 AV833969 barley 227 455
LYM186 barley gbl57.3 AV834971 barley 228 370
LYM188 barley|gbl57.3|BE438660 barley 229 456
LYM189 barley|gbl57.3|BF256192 barley 230 457
LYM192 barley|gbl57.3|BF627356 barley 231 458
LYM193 barley|gbl57.3|CB858276 barley 232 459
LYM194 barley gbl57.3 CB860975 barley 233 460
LYM219 maize|gbl64|BE238495 maize 234 389
LYM221 maize|gbl64|BI502603 maize 235 461
LYM228 maize|gbl64|EC892599 maize 236 462
LYM250 rice gbl57.3 CA759158 rice 237 463
LYM183 barley gbl57.3 AL509795 barley 238 464
LYM272 rice|gbl57.2|CA761620 rice 239 465
Table 1: Provided are the identified genes, their annotation, organism and polynucleotide and polypeptide sequence identifiers.
EXAMPLE 2
IDENTIFICATION OF HOMOLOGOUS SEQUENCES THAT INCREASE YIELD, FIBER YIELD, FIBER QUALITY, GROWTH RATE, BIOMASS, OIL CONTENT, VIGOR, ABST, AND/OR NUE OF A PLANT
The concepts of orthology and paralogy have recently been applied to functional characterizations and classifications on the scale of whole-genome comparisons.
Ortho logs and paralogs constitute two major types of homologs: The first evolved from a common ancestor by specialization, and the latter are related by duplication events. It is assumed that paralogs arising from ancient duplication events are likely to have diverged in function while true orthologs are more likely to retain identical function over evolutionary time.
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To identify putative orthologs of the genes affecting plant yield, oil yield, oil content, seed yield, growth rate, vigor, biomass, abiotic stress tolerance and/or nitrogen use efficiency, all sequences were aligned using the BLAST (Basic Local Alignment Search Toot). Sequences sufficiently similar were tentatively grouped. These putative orthologs were further organized under a Phylogram - a branching diagram (tree) assumed to be a representation of the evolutionary relationships among the biological taxa. Putative ortholog groups were analyzed as to their agreement with the phylogram and in cases of disagreements these ortholog groups were broken accordingly.
Expression data was analyzed and the EST libraries were classified using a fixed vocabulary of custom terms such as developmental stages (e.g., genes showing similar expression profile through development with up regulation at specific stage, such as at the seed filling stage) and/or plant organ (e.g., genes showing similar expression profile across their organs with up regulation at specific organs such as seed). The annotations from all the ESTs clustered to a gene were analyzed statistically by comparing their frequency in the cluster versus their abundance in the database, allowing the construction of a numeric and graphic expression profile of that gene, which is termed “digital expression”. The rationale of using these two complementary methods with methods of phenotypic association studies of QTLs, SNPs and phenotype expression correlation is based on the assumption that true orthologs are likely to retain identical function over evolutionary time. These methods provide different sets of indications on function similarities between two homologous genes, similarities in the sequence level identical amino acids in the protein domains and similarity in expression profiles.
The search and identification of homologous genes involves the screening of sequence information available, for example, in public databases such as the DNA Database of Japan (DDBJ), Genbank, and the European Molecular Biology Laboratory Nucleic Acid Sequence Database (EMBL) or versions thereof or the MIPS database. A number of different search algorithms have been developed, including but not limited to the suite of programs referred to as BLAST programs. There are five implementations of BLAST, three designed for nucleotide sequence queries (BLASTN, BLASTX, and TBLASTX) and two designed for protein sequence queries (BLASTP and TBLASTN) (Coulson, Trends in Biotechnology: 76-80, 1994; Birren et al., Genome Analysis, I: 543, 1997). Such methods involve alignment and comparison of sequences. The
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BLAST algorithm calculates percent sequence identity and performs a statistical analysis of the similarity between the two sequences. The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. Other such software or algorithms are GAP, BESTLIT, EASTA and TFASTA. GAP uses the algorithm of Needleman and Wunsch (J. Mol. Biol. 48: 443453, 1970) to find the alignment of two complete sequences that maximizes the number of matches and minimizes the number of gaps.
The homologous genes may belong to the same gene family. The analysis of a gene family may be carried out using sequence similarity analysis. To perform this analysis one may use standard programs for multiple alignments e.g. Clustal W. A neighbour-joining tree of the proteins homologous to the genes in this invention may be used to provide an overview of structural and ancestral relationships. Sequence identity may be calculated using an alignment program as described above. It is expected that other plants will carry a similar functional gene (ortholog) or a family of similar genes and those genes will provide the same preferred phenotype as the genes presented here. Advantageously, these family members may be useful in the methods of the invention. Example of other plants are included here but not limited to, barley (Hordeum vulgare), Arabidopsis (Arabidopsis thaliana), maize (Zea mays), cotton (Gossypium), Oilseed rape (Brassica napus), Rice (Oryza sativa), Sugar cane (Saccharum officinarum), Sorghum (Sorghum bicolor), Soybean (Glycine max), Sunflower (Helianthus annuus), Tomato (Lycopersicon esculentum), Wheat (Triticum aestivum).
The above-mentioned analyses for sequence homology can be carried out on a full-length sequence, but may also be based on a comparison of certain regions such as conserved domains. The identification of such domains, would also be well within the realm of the person skilled in the art and would involve, for example, a computer readable format of the nucleic acids of the present invention, the use of alignment software programs and the use of publicly available information on protein domains, conserved motifs and boxes. This information is available in the PRODOM (Hypertext Transfer Protocol://World Wide Web (dot) biochem (dot) ucl (dot) ac (dot) uk/bsm/dbbrowser/protocol/prodomqry (dot) html), PIR (Hypertext Transfer Protocol ://pir (dot) Georgetown (dot) edu/) or Pfam (Hypertext Transfer Protocol://World Wide Web (dot) sanger (dot) ac (dot) uk/Software/Pfam/) database.
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Sequence analysis programs designed for motif searching may be used for identification of fragments, regions and conserved domains as mentioned above. Preferred computer programs include, but are not limited to, MEME, SIGNALSCAN, and GENESCAN.
A person skilled in the art may use the homologous sequences provided herein to find similar sequences in other species and other organisms. Homologues of a protein encompass, peptides, oligopeptides, polypeptides, proteins and enzymes having amino acid substitutions, deletions and/or insertions relative to the unmodified protein in question and having similar biological and functional activity as the unmodified protein from which they are derived. To produce such homologues, amino acids of the protein may be replaced by other amino acids having similar properties (conservative changes, such as similar hydrophobicity, hydrophilicity, antigenicity, propensity to form or break a-helical structures or 3-sheet structures). Conservative substitution tables are well known in the art (see for example Creighton (1984) Proteins. W.H. Freeman and Company). Homologues of a nucleic acid encompass nucleic acids having nucleotide substitutions, deletions and/or insertions relative to the unmodified nucleic acid in question and having similar biological and functional activity as the unmodified nucleic acid from which they are derived.
Table 2, hereinbelow, lists a summary of orthologous and homologous sequences of the polynucleotide sequences (SEQ ID NOs: 1-239) and polypeptide sequences (SEQ ID NOs:240-465) presented in Table 1 above, which were identified from the databases using the NCBI BLAST software (e.g., using the Blastp and tBlastn algorithms) and needle (EMBOSS package) as being at least 80% homologous to the selected polynucleotides and polypeptides, and which are expected to increase plant yield, seed yield, oil yield, oil content, growth rate, fiber yield, fiber quality, biomass, vigor, ABST and/or NUE of a plant.
Table 2
Homologues of the identified genes/polypeptides for increasing yield, fiber yield, fiber quality, growth rate, vigor, biomass, growth rate, abiotic stress tolerance, nitrogen use efficiency, water use efficiency and fertilizer use efficiency of a plant
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
467 LYM2 H5 brachypodium 09vl D V480246 1974 241 89.1 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
468 LYM2 H6 maize|gbl70|AW2249 18 1975 241 86.6 blastp
469 LYM2 H7 millet 09vlEVO454P M002089 1976 241 87.6 blastp
470 LYM2 H8 sorghum 09vlSB07G 004285 1977 241 86.6 blastp
471 LYM2 H4 switchgrass gb 167 FE6 06998 1978 241 89.9 blastp
472 LYM2 H5 wheat|gbl64|BM1368 11 1979 241 80.53 tblastn
473 LYM4 H6 barley gbl 57SOLEXA IBE438934 1980 243 81.5 blastp
474 LYM4 H7 brachypodium 09vl D V469575 1981 243 81.5 blastp
475 LYM4 H2 cenchrus|gbl66|BM08 4020 1982 243 83 blastp
476 LYM4 H8 maize|gbl70|AI60099 4 1983 243 82.2 blastp
477 LYM4 H9 maize|gbl70|AW0544 78 1984 243 82.4 blastp
478 LYM4H10 rice gbl70 QS05G139 50 1985 243 94.7 blastp
479 LYM4H11 sorghum 09vl SB03G 000920 1986 243 83.2 blastp
480 LYM4 H5 switchgrass gb 167 FL7 03533 1987 243 83 blastp
481 LYM4 H6 wheat|gbl64|BE44499 1 1988 243 81.3 blastp
482 LYM5 Hl6 barley gbl 57SOLEXA IBI953887 1989 244 90.9 blastp
483 LYM5 Hl7 brachypodium 09vl D V474010 1990 244 91.3 blastp
484 LYM5 H3 cenchrus|gbl66|EB655 978 1991 244 88.19 tblastn
485 LYM5 H4 fescue gbl61DT6881 32 1992 244 85.8 blastp
486 LYM5 H5 leymus gbl66 EG3949 68 1993 244 90.9 blastp
487 LYM5H18 maize|gbl70|AI78329 0 1994 244 92.1 blastp
488 LYM5 H19 maize|gbl70|BG26515 8 1995 244 92.5 blastp
489 LYM5 H20 rice gbl70 QS02G466 60 1996 244 87.8 blastp
490 LYM5 H21 sorghum 09vl SB04G 031180 1997 244 80.3 blastp
491 LYM5 H22 sorghum 09v 1 SB06G 027060 1998 244 90.9 blastp
492 LYM5 H23 sugarcane gbl57.3 CA 118359 1999 244 91.7 blastp
493 LYM5 H12 switchgrass gbl 67 FE6 41223 2000 244 93.3 blastp
494 LYM5 Hl3 switchgrass gbl 67 FL7 08642 2001 244 92.5 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
495 LYM5 H14 wheat|gbl64|BE41473 3 2002 244 90.6 blastp
496 LYM5 Hl5 wheat|gbl64|BE43102 6 2003 244 91.3 blastp
497 LYM5 Hl6 wheat|gbl64|CA61338 0 2004 244 90.9 blastp
498 LYM7 H35 b oleracea|gbl61|AM05 7184 2005 246 81.2 blastp
499 LYM7 H36 barley gbl57SOLEXA IBE413128 2006 246 82.6 blastp
500 LYM7 H37 barley gbl57SOLEXA |BF627706 2007 246 95.7 blastp
501 LYM7 H38 brachypodium 09vl D V468966 2008 246 94.2 blastp
502 LYM7 H39 brachypodium 09vl D V474806 2009 246 82.6 blastp
503 LYM7 H6 bruguiera gb 166 BP94 5554 2010 246 81.2 blastp
504 LYM7 H40 canola|gbl61|CD8116 53 2011 246 81.2 blastp
505 LYM7 H41 canola|gbl61|CD8384 23 2012 246 81.2 blastp
506 LYM7 H42 cassava|09vl|CK6523 48 2013 246 82.6 blastp
507 LYM7 H43 castorbean 09vl XMO 02532394 2014 246 82.6 blastp
508 LYM7 H44 cucumber 09vl AM71 7859 2015 246 82.6 blastp
509 LYM7 H9 eucalyptus gb 166 CB9 67858 2016 246 81.2 blastp
510 LYM7H10 kiwi|gbl66|FG431017 2017 246 81.2 blastp
511 LYM7H11 kiwi|gbl66|FG521634 2018 246 82.6 blastp
512 LYM7 H12 liriodendron| gb 16 61F D 494835 2019 246 82.6 blastp
513 LYM7 H45 maize|gbl70|AI94390 8 2020 246 82.6 blastp
514 LYM7 H46 maize|gbl70|AW2822 44 2021 246 88.4 blastp
515 LYM7 H47 maize|gbl70|LLAI855 232 2022 246 82.61 tblastn
516 LYM7 H48 maize|gbl70|LLDN20 9190 2023 246 82.61 tblastn
517 LYM7 H49 millet 09vlEVO454P M003641 2024 246 91.3 blastp
518 LYM7 H50 millet 09vlEVO454P M019125 2025 246 81.2 blastp
519 LYM7H16 oat|gbl64|CN817490 2026 246 88.4 blastp
520 LYM7H17 oat|gbl64|CN819643 2027 246 82.6 blastp
521 LYM7 H51 poplar|gb 170|BI06944 6 2028 246 81.2 blastp
522 LYD97 H18 poplar|gbl70|BI12366 2 2029 246 81.2 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
523 LYM7 H20 rye|gbl64|BE496021 2030 246 94.2 blastp
524 LYM7 H21 rye|gbl64|BE587226 2031 246 81.2 blastp
525 LYM7 H52 sorghum 09vl SB05G 003875 2032 246 88.4 blastp
526 LYM7 H53 sugarcane gbl57.3 CA 079082 2033 246 89.9 blastp
527 LYM7 H54 sugarcane gbl57.3 CA 158782 2034 246 81.2 blastp
528 LYM7 H25 switchgrass gb167 DN 149707 2035 246 82.6 blastp
529 LYM7 H26 switchgrass gb 167 FE6 44021 2036 246 84.1 blastp
530 LYM7 H27 switchgrass gbl 67 FE6 57215 2037 246 80 blastp
531 LYM7 H28 switchgrass gbl 67 FE6 58413 2038 246 88.4 blastp
532 LYM7 H29 switchgrass gbl 67 FL6 89692 2039 246 88.4 blastp
533 LYM7 H30 wheat|gbl64|BE40435 0 2040 246 81.2 blastp
534 LYM7 H31 wheat|gbl64|BE41437 1 2041 246 84.1 blastp
535 LYM7 H32 wheat|gbl64|BE43001 7 2042 246 94.2 blastp
536 LYM7 H33 wheat|gbl64|BE44405 8 2043 246 95.7 blastp
537 LYM7 H34 wheat|gbl64|BE44478 9 2044 246 82.6 blastp
538 LYM7 H35 wheat|gbl64|CA59836 3 2045 246 95.7 blastp
539 LYM8 H7 arabidopsis lyrata|09vl|JGIAL008 627 2046 247 80.2 blastp
540 LYM8 H8 arabidopsis lyrata|09vl|JGIAL021 400 2047 247 83.3 blastp
541 LYM8 Hl arabidopsis gb 165 AT 3G03110 2048 247 80.6 blastp
542 LYM8 H2 arabidopsis gb 165 AT 5G17020 2049 247 82.9 blastp
543 LYM8 H9 brachypodium 09vl G T774368 2050 247 95.6 blastp
544 LYM8H10 castorbean|09vl |EE25 5045 2051 247 84.2 blastp
545 LYM8H11 che stnut gb 17 0 S RR0 0 6295S0059698 2052 247 85.7 blastp
546 LYM8 H12 cucumber 09v 1 GD17 4631 2053 247 84.5 blastp
547 LYM8H13 lotus|09vl|BP043858 2054 247 83.8 blastp
548 LYM8 H14 lotus 09vlBP071708 2055 247 83.6 blastp
549 LYM8H15 maize|gbl70|AA03070 9 2056 247 92.1 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
550 LYM8H16 maize|gbl70|AI62152 2 2057 247 92.2 blastp
551 LYM8H17 medicago 09vlBE205 102 2058 247 83.5 blastp
552 LYM8H18 medicago 09v 1 BM7 7 9128 2059 247 83.9 blastp
553 LYM8 H19 poplar|gbl70|BI12744 4 2060 247 84.8 blastp
554 LYM8 H20 poplar gb 170 BU83 79 11 2061 247 85 blastp
555 LYM8 H21 rice gb 170 OS03G640 80 2062 247 99.72 tblastn
556 LYM8 H22 solanum phureja|09vl|SPHBGl 28228 2063 247 83.2 blastp
557 LYM8 H23 sorghum 09v 1 SBO1G 000490 2064 247 93.9 blastp
558 LYM8 H24 sorghum|09vl|SB02G 009800 2065 247 89 blastp
559 LYM8 H6 soybean|gbl68|BE205 102 2066 247 82.98 tblastn
560 LYM8 H7 soybean|gbl68|BE823 809 2067 247 81.6 blastp
561 LYM8 H25 tomato|09vl|BG12822 8 2068 247 83.33 tblastn
562 LYM9 HO lolium|09vl|AU24559 9 2069 248 80.1 blastp
563 LYM10H1 antirrhinum|gb 16 61AJ7 86992 2070 249 89.9 blastp
564 LYM10 H207 apple gbl 71 CN44392 9 2071 249 91.3 blastp
565 LYM10 H208 apple gbl 71 CN48976 3 2072 249 91.3 blastp
566 LYM10 H209 apple gbl71 CN87419 2 2073 249 87 blastp
567 LYM10 H210 arabidopsis lyrata|09vl|JGIAL017 989 2074 249 85.5 blastp
568 LYM10 H211 arabidopsis lyrata|09vl|JGIAL025 614 2075 249 91.3 blastp
569 LYM10 H212 arabidopsis lyrata|09vl|JGIAL029 470 2076 249 91.3 blastp
570 LYM10H7 arabidopsis gb 165 AT 3G48570 2077 249 85.5 blastp
571 LYM10H8 arabidopsis gb 165 AT 4G24920 2078 249 91.3 blastp
572 LYM10H9 arabidopsis gb 165 AT 5G50460 2079 249 91.3 blastp
573 LYM10 H10 artemisia gbl 64 EX98 0216 2080 249 88.4 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
574 LYM10 Hll b juncea gbl 64 EVGNO 0323614690486 2081 249 85.5 blastp
575 LYM10 H12 b juncea gbl 64 EVGNO 0357611620134 2082 249 81.16 tblastn
576 LYM10 H13 b juncea gbl 64 EVGNO 0407015981886 2083 249 91.3 blastp
577 LYM10 H14 b juncea gbl 64 EVGNO 1046711722157 2084 249 91.3 blastp
578 LYM10 H15 b juncea gbl 64 EVGNO 1350404310247 2085 249 91.3 tblastn
579 LYM10 H16 b juncea gbl 64 EVGNO 1826229072660 2086 249 91.3 blastp
580 LYM10 H17 b juncea gbl 64 EVGN1 0412810992898 2087 249 86.3 blastp
581 LYM10 H18 b juncea gbl 64 EVGN1 9578802581818 2088 249 81.2 blastp
582 LYM10 H19 b oleracea|gbl61|AM05 9639 2089 249 91.3 blastp
583 LYM10 H20 b oleracea|gb 161 |EH414 574 2090 249 91.3 blastp
584 LYM10 H21 b oleracea|gb 161 |EH427 198 2091 249 81.7 blastp
585 LYM10 H22 b rapa|gbl62|BG544908 2092 249 91.3 blastp
586 LYM10 H23 b rapa|gbl62|DY010003 2093 249 91.3 blastp
587 LYM10 H24 b rapa|gbl62|EE524434 2094 249 91.3 tblastn
588 LYM10 H25 b rapa|gbl62|L35825 2095 249 91.3 blastp
589 LYM10 H26 banana|gbl67|DN2397 48 2096 249 94.2 blastp
590 LYM10 H27 banana|gbl67|ES4325 17 2097 249 95.7 blastp
591 LYM10 H28 banana|gbl67|FL6497 89 2098 249 95.7 blastp
592 LYM10 H29 banana|gbl67|FL6581 61 2099 249 94.2 blastp
593 LYM10 H213 barley gbl 57SOLEXA |AJ433765 2100 249 100 blastp
594 LYM10 H214 barley gbl 57SOLEXA |BE412470 2101 249 100 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
595 LYM10 H215 barley gbl57SOLEXA IBF254576 2102 249 98.6 blastp
596 LYM10 H216 barley gbl57SOLEXA IBF257015 2103 249 100 blastp
597 LYM10 H34 beangbl67 CA907476 2104 249 92.75 tblastn
598 LYM10 H35 beangbl67 CA907483 2105 249 94.2 blastp
599 LYM10 H217 beech gb 170 SRR0062 93S0011456 2106 249 92.8 blastp
600 LYM10 H218 beech gb 170 SRR0062 94S0008365 2107 249 88.4 blastp
601 LYM10 H219 brachypodium 09vl D V469126 2108 249 100 blastp
602 LYM10 H220 brachypodium 09vl G T803631 2109 249 92.8 blastp
603 LYM10 H38 bruguiera gb 166 BP94 1922 2110 249 95.7 blastp
604 LYM10 H39 bruguiera gb 166 BP94 4773 2111 249 95.7 blastp
605 LYM10 H40 cacao|gbl67|CU47152 9 2112 249 94.2 blastp
606 LYM10 H41 cacao|gbl67|CU48059 7 2113 249 84.1 blastp
607 LYM10 H42 cacao gbl67CU49329 8 2114 249 89.9 blastp
608 LYM10 H43 canola|gbl61|CD8132 31 2115 249 91.3 tblastn
609 LYM10 H44 canola|gbl61|CD8175 28 2116 249 91.3 tblastn
610 LYM10 H45 canola|gbl61|CD8200 75 2117 249 91.3 tblastn
611 LYM10 H46 canola|gbl61|CD8242 39 2118 249 91.3 tblastn
612 LYM10 H47 canola|gbl61|CD8380 62 2119 249 86.3 blastp
613 LYM10 H48 canola|gbl61|CD8408 08 2120 249 91.3 blastp
614 LYM10 H49 canola|gbl61|CN7324 34 2121 249 91.3 tblastn
615 LYM10 H50 canola|gbl61|DW9992 88 2122 249 91.3 blastp
616 LYM10 H51 canola|gbl61|EE43417 6 2123 249 84.1 blastp
617 LYM10 H52 canola|gb 161 |EE46403 6 2124 249 87 blastp
618 LYM10 H221 cassava|09vl|CK6422 25 2125 249 94.2 blastp
619 LYM10 H222 cassava 09vl DV4557 17 2126 249 94.2 blastp
620 LYM10 H223 cassava 09v 1 FF3 803 8 9 2127 249 94.2 blastp
621 LYM10 H224 castorbean|09vl |EG66 4279 2128 249 92.8 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
622 LYM10 H225 castorbean 09vlXM0 02509459 2129 249 91.3 blastp
623 LYM10 H58 c atharanthus | gb 1661E G560643 2130 249 91.3 blastp
624 LYM10 H59 c atharanthus | gb 16 61FD 416462 2131 249 91.3 blastp
625 LYM10 H60 c atharanthus | gb 16 61 FD 420164 2132 249 92.8 blastp
626 LYM10 H61 centaurea|gbl66|EH74 7070 2133 249 87 blastp
627 LYM10 H62 centaurea|gbl66|EH78 8831 2134 249 89.9 blastp
628 LYM10 H226 chestnut gbl 70 SRRO0 6295S0002470 2135 249 95.7 blastp
629 LYM10 H227 chestnut gbl70 SRRO0 6295S0013318 2136 249 92.8 blastp
630 LYM10 H228 cichorium gb 171 FL67 3304 2137 249 85.51 tblasta
631 LYM10 H63 citrus|gbl66|CF41752 0 2138 249 91.3 blastp
632 LYM10 H64 coffeagbl57.2 DV666 460 2139 249 91.3 blastp
633 LYM10 H65 coffeagbl57.2 DV676 797 2140 249 89.86 tblasta
634 LYM10 H66 cotton gb 164 BE05219 8 2141 249 94.2 blastp
635 LYM10 H67 cotton gbl 64 BQ4048 33 2142 249 95.7 blastp
636 LYM10 H68 cotton|gbl64|BQ4074 07 2143 249 92.8 blastp
637 LYM10 H69 cotton gb 164 CK6405 93 2144 249 95.7 blastp
638 LYM10 H70 cotton gbl64DT05275 9 2145 249 88 blastp
639 LYM10 H71 cotton gbl64DT57406 1 2146 249 80.7 blastp
640 LYM10 H72 cowpea gb 166FF3865 43 2147 249 94.2 blastp
641 LYM10 H73 cowpea gb 166 FF3 893 57 2148 249 94.2 tblasta
642 LYM10 H74 cryptomeria|gb 1661 BP 174192 2149 249 89.9 blastp
643 LYM10 H75 cryptomeria|gb 1661 BP 174931 2150 249 88.6 blastp
644 LYM10 H229 cucumber 09vl AM71 5093 2151 249 88.41 tblasta
645 LYM10 H230 cucumber 09vl AM72 0495 2152 249 98.6 blastp
646 LYM10 H231 cucumber 09vl DN90 9507 2153 249 95.7 blastp
647 LYM10 H76 cycas gbl66 CB09149 9 2154 249 88.4 blastp
648 LYM10 H77 cynaragbl67 GE5892 84 2155 249 88.4 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
649 LYM10 H78 dandelion gb 161 DY 8 11008 2156 249 88.41 tblastn
650 LYM10 H79 dandelion gb 161 DY 8 39599 2157 249 89.86 tblastn
651 LYM10 H80 eucalyptus gb 166 CD6 69252 2158 249 92.8 blastp
652 LYM10 H232 femgbl71 DK961389 2159 249 88.4 blastp
653 LYM10 H81 fescue gbl61DT7022 92 2160 249 100 tblastn
654 LYM10 H82 fescue gbl61DT7044 58 2161 249 100 tblastn
655 LYM10 H233 flax|09vl|EU829193 2162 249 92.8 blastp
656 LYM10 H234 gerbera|09vl|AJ76119 3 2163 249 89.9 blastp
657 LYM10 H235 gerbera|09v 11AJ76591 3 2164 249 84.1 blastp
658 LYM10 H83 ginger|gbl64|DY3684 24 2165 249 95.65 tblastn
659 LYM10 H84 ginger|gbl64|DY3821 25 2166 249 94.2 blastp
660 LYM10 H85 grape|gbl60|BQ79355 2 2167 249 91.3 blastp
661 LYM10 H86 grape|gbl60|CA80999 7 2168 249 91.3 blastp
662 LYM10 H87 iceplant|gbl64|AI9434 23 2169 249 88.4 blastp
663 LYM10 H88 ipomoea|gbl57.2|BJ55 3479 2170 249 89.86 tblastn
664 LYM10 H89 ipomoea gbl57.2 CB3 29955 2171 249 88.41 tblastn
665 LYM10 H90 ipomoea gbl 57.2 CJ75 1960 2172 249 88.4 blastp
666 LYM10 H236 jatropha|09vl |GO2476 49 2173 249 94.2 blastp
667 LYM10 H91 kiwigbl66 FG397070 2174 249 89.9 blastp
668 LYM10 H92 kiwi|gbl66|FG477805 2175 249 95.7 blastp
669 LYM10 H93 lettuce gbl57.2 DW04 7717 2176 249 88.4 blastp
670 LYM10 H94 lettuce gbl57.2 DW05 1281 2177 249 89.9 blastp
671 LYM10 H95 lettuce gbl57.2 DW08 0235 2178 249 82.61 tblastn
672 LYM10 H96 lettuce gbl57.2 DW10 1958 2179 249 88.4 blastp
673 LYM10 H97 lettuce gbl57.2 DW12 3456 2180 249 88.41 tblastn
674 LYM10 H237 liquorice|gbl71|FS242 287 2181 249 94.2 blastp
675 LYM10 H98 liriodendron| gb 16 61F D 495465 2182 249 95.7 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
676 LYM10 H99 liriodendron| gb 16 61F D 500844 2183 249 94.2 blastp
677 LYM10 H238 lolium|09vl|AU24781 9 2184 249 98.6 blastp
678 LYM10 H239 lotus 09vl CB827059 2185 249 92.8 blastp
679 LYM10 H240 lotus|09vl|DN652280 2186 249 89.9 blastp
680 LYM10 H102 lovegrass gbl67DN48 2980 2187 249 98.6 blastp
681 LYM10 H241 maize|gbl70|AI00134 0 2188 249 97.1 blastp
682 LYM10 H242 maize|gbl70|AI66551 2 2189 249 98.6 blastp
683 LYM10 H243 maizegbl70 AI67719 5 2190 249 97.1 blastp
684 LYM10 H244 maize | gb 17 01LLAI619 401 2191 249 97.1 blastp
685 LYM10 H245 maize|gbl70|LLCF003 156 2192 249 81.16 tblastn
686 LYM10 H246 maize | gb 17 01LLDQ24 5943 2193 249 98.6 blastp
687 LYM10 H247 maize|gbl70|W21637 2194 249 98.6 blastp
688 LYM10 H109 marchantia|gbl 66|BJ8 44102 2195 249 87 blastp
689 LYM10 H248 medicago|09vl|AA660 461 2196 249 94.2 blastp
690 LYM10 H249 medicago 09vl AW28 7868 2197 249 94.2 blastp
691 LYM10 H250 medicago 09v 1 LLBQ 138650 2198 249 85.5 blastp
692 LYM10 H112 melon gbl 65 AM7150 93 2199 249 94.2 tblastn
693 LYM10 H113 melon gbl 65 AM7204 95 2200 249 98.55 tblastn
694 LYM10 H114 melon|gbl65|DV6317 10 2201 249 95.7 blastp
695 LYM10 H251 millet|09vl|CD724432 2202 249 98.6 blastp
696 LYM10 H252 monkeyflower|09vl |D V208117 2203 249 91.3 blastp
697 LYM10 H116 nuphar|gbl66|CD4725 02 2204 249 97.1 blastp
698 LYM10 H253 oak gbl70 SRR006307 S0013335 2205 249 94.2 blastp
699 LYM10 H254 oak gbl70 SRR006307 S0023745 2206 249 92.75 tblastn
700 LYM10 H117 oil palm|gbl66|EL684180 2207 249 92.8 blastp
701 LYM10 H118 onion gbl62 BQ58014 8 2208 249 97.1 blastp
702 LYM10 H119 papayagbl65 EX2792 51 2209 249 89.9 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
703 LYM10 H255 peanut|gbl71|EE1245 30 2210 249 94.2 blastp
704 LYM10 H256 peanut|gbl71|EE1266 80 2211 249 94.2 blastp
705 LYM10 H257 peanut|gbl 71 |EG0288 25 2212 249 81.2 blastp
706 LYM10 H258 peanutgbl71 EG3739 93 2213 249 94.2 blastp
707 LYM10 H259 pepper gb 171 CA5166 79 2214 249 91.3 blastp
708 LYM10 H260 pepper gbl71GD0537 70 2215 249 89.9 blastp
709 LYM10 H261 petunia gbl71 AF0499 33 2216 249 87 blastp
710 LYM10 H262 petunia gbl71 EB1743 81 2217 249 87 blastp
711 LYM10 H263 physcomitrella| 1 Ον 11A W145358 2218 249 81.2 blastp
712 LYM10 H264 physcomitrella| 1 Ον 1 |B G361572 2219 249 81.2 blastp
713 LYM10 H133 pine|gbl57.2|AL75081 3 2220 249 91.3 blastp
714 LYM10 H134 pine|gbl57.2|AW0648 95 2221 249 91.3 blastp
715 LYM10 H135 pine|gbl57.2|AW2264 88 2222 249 89.9 blastp
716 LYM10 H265 poplar|gbl70|BI12774 5 2223 249 92.8 blastp
717 LYM10 H266 poplar|gbl70|BU8241 90 2224 249 92.8 blastp
718 LYM10 H267 poplar|gbl70|BU8626 32 2225 249 92.8 blastp
719 LYM10 H139 poppy gbl 66 FE96500 9 2226 249 88.4 blastp
720 LYM10 H140 poppy gbl 66 FE96643 0 2227 249 92.8 blastp
721 LYM10 H141 potato|gbl57.2|BG350 890 2228 249 91.3 blastp
722 LYM10 H142 potato|gbl57.2|BG589 211 2229 249 89.86 tblastn
723 LYM10 H143 potato|gbl57.2|BG592 598 2230 249 89.86 tblastn
724 LYM10 H144 potato|gbl57.2|BQ516 058 2231 249 91.3 blastp
725 LYM10 H145 prunus gbl67 BU0395 66 2232 249 92.8 blastp
726 LYM10 H146 prunus gbl 67 BU0467 83 2233 249 87 blastp
727 LYM10 H147 radish|gbl64|EV52635 4 2234 249 91.3 tblastn
728 LYM10 H148 radish|gbl64|EV52839 0 2235 249 91.3 blastp
729 LYM10 H149 radish|gbl64|EV53627 3 2236 249 91.3 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
730 LYM10 H150 radish|gbl64|EV54575 1 2237 249 91.3 tblastn
731 LYM10 H151 radish|gbl64|EV54872 1 2238 249 91.3 blastp
732 LYM10 H152 radish|gbl64|EV55048 8 2239 249 91.3 blastp
733 LYM10 H153 radish|gbl64|EV56739 7 2240 249 85.5 blastp
734 LYM10 H154 radish|gbl64|EW7134 25 2241 249 89.9 blastp
735 LYM10 H155 radish|gbl64|FD57055 9 2242 249 89.9 blastp
736 LYM10 H268 rice gb 170 OS06G443 74 2243 249 95.7 blastp
737 LYM10 H157 rose gbl57.2 BI97819 8 2244 249 91.3 tblastn
738 LYM10 H158 rose|gbl57.2|EC58984 2 2245 249 92.75 tblastn
739 LYM10 H159 safflower gbl 62 EL39 3855 2246 249 88.41 tblastn
740 LYM10 H160 safflower|gbl62|EL51 1136 2247 249 89.9 blastp
741 LYM10 H269 senecio gbl70 CO553 399 2248 249 88.4 blastp
742 LYM10 H161 sesame gbl 57.2 BU66 9069 2249 249 91.3 tblastn
743 LYM10 H270 solanum phureja|09vl|SPHAI4 83617 2250 249 89.9 blastp
744 LYM10 H271 solanum phureja|09vl|SPHBGl 27130 2251 249 91.3 blastp
745 LYM10 H272 sorghum 09v 1 SB04G 005280 2252 249 98.6 blastp
746 LYM10 H273 sorghum 09v 1 SB 1OG 026000 2253 249 97.1 blastp
747 LYM10 H164 soybean|gbl68|AA660 461 2254 249 94.2 blastp
748 LYM10 H165 soybean gbl 68 AW47 2512 2255 249 92.8 blastp
749 LYM10 H166 soybean gbl 68 BU544 187 2256 249 94.2 blastp
750 LYM10 H167 spikemoss gbl 65DN8 38422 2257 249 85.51 tblastn
751 LYM10 H168 spruce gb 162 CO2169 79 2258 249 91.3 blastp
752 LYM10 H169 spruce gb 162 CO2170 20 2259 249 91.3 blastp
753 LYM10 H170 spurge gb 161 DV1126 55 2260 249 84.1 blastp
754 LYM10 H171 spurge gbl 61DV1202 63 2261 249 86.5 blastp
755 LYM10 H172 strawberry gb 164 CO3 80171 2262 249 91.3 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
756 LYM10 H173 strawberry) gbl 64|EX6 64646 2263 249 92.8 blastp
757 LYM10 H274 sugarcane gbl57.3 CA 072778 2264 249 97.1 blastp
758 LYM10 H275 sugarcane gbl57.3 CA 087927 2265 249 98.6 blastp
759 LYM10 H276 sugarcane gbl57.3 CA 103056 2266 249 98.6 blastp
760 LYM10 H177 sunflower gb 162 BUO 15373 2267 249 89.86 tblastn
761 LYM10 H178 sunflower gb 162 CD8 49625 2268 249 88.4 blastp
762 LYM10 H179 sunflower gb 162 CD8 51122 2269 249 88.41 tblastn
763 LYM10 H180 switchgrass gb 167 DN 145554 2270 249 98.6 blastp
764 LYM10 H181 switchgrass gbl 67 FE6 33347 2271 249 97.1 blastp
765 LYM10 H182 switchgrass gb 167 FE6 39131 2272 249 98.6 blastp
766 LYM10 H183 switchgrass gb 167 FL7 20694 2273 249 95.7 blastp
767 LYM10 H184 tamarix | gb 16 61EG9 6 8 743 2274 249 85.5 blastp
768 LYM10 H185 tamarix | gb 16 61EG9 69 152 2275 249 88.4 blastp
769 LYM10 H277 teagbl71 FF682807 2276 249 95.7 blastp
770 LYM10 H186 thellungiella| gb 16 71 BI 698898 2277 249 91.3 blastp
771 LYM10 H187 thellungiella gb 16 7 EC 599088 2278 249 91.3 blastp
772 LYM10 H188 tobacco gbl 62 CV020 564 2279 249 81.8 blastp
773 LYM10 H189 tobacco gbl 62 CV021 149 2280 249 80.8 blastp
774 LYM10 H190 tobacco gbl 62 CV021 577 2281 249 91.3 tblastn
775 LYM10 H191 tobacco|gbl62|EB426 093 2282 249 91.3 tblastn
776 LYM10 H192 tobacco|gbl62|EB447 225 2283 249 89.9 blastp
777 LYM10 H278 tomato|09vl|AI483617 2284 249 89.9 blastp
778 LYM10 H279 tomato|09vl|BG12713 0 2285 249 91.3 tblastn
779 LYM10 H195 triphysaria|gbl 64|EX9 88147 2286 249 81.6 blastp
780 LYM10 H196 walnuts gbl 66 CB3 04 079 2287 249 98.6 blastp
781 LYM10 H197 wheat|gbl64|BE42322 6 2288 249 100 tblastn
782 LYM10 H198 wheat|gbl64|BE42385 8 2289 249 100 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
783 LYM10 H199 wheat|gbl64|BE44513 9 2290 249 98.55 tblastn
784 LYM10 H200 wheat|gbl64|BE60483 4 2291 249 98.55 tblastn
785 LYM10 H201 wheat|gbl64|BF47348 2 2292 249 100 tblastn
786 LYM10 H202 wheat|gbl64|BF47481 4 2293 249 98.55 tblastn
787 LYM10 H203 wheatgbl64 BI47989 5 2294 249 98.55 tblastn
788 LYM10 H204 wheat|gbl64|CA61935 7 2295 249 86.96 tblastn
789 LYM10 H205 wheat gbl 64 CA61996 5 2296 249 91.3 tblastn
790 LYM10 H206 wheat|gbl64|CA62731 5 2297 249 83.8 blastp
791 LYM10 H207 wheat|gbl64|DR73720 5 2298 249 85.51 tblastn
792 LYM13 H3 brachypodium 09vl G T794488 2299 251 80.6 blastp
793 LYM13 H4 maize|gbl70|T12684 2300 251 84.5 blastp
794 LYM13 H5 sorghum 09v 1SBO1G 049950 2301 251 84.5 blastp
795 LYM13 H3 switchgrass|gbl67|FE6 34401 2302 251 84.53 tblastn
796 LYM14 Hl aquilegia gbl57.3 DR9 27713 2303 252 81.1 blastp
797 LYM14 H31 arabidopsis lyrata|09vl|JGIAL009 556 2304 252 80.7 blastp
798 LYM14 H32 arabidopsis lyrata|09vl|JGIAL020 254 2305 252 80.4 blastp
799 LYM14 H2 arabidopsis gb 165 AT 3G11320 2306 252 80.4 blastp
800 LYM14 H3 arabidopsis gb 165 AT 5G05820 2307 252 80.4 blastp
801 LYM14 H4 artemisia|gb 164|EY 03 4514 2308 252 81.7 blastp
802 LYM14 H33 brachypodium 09vl G T762844 2309 252 96 blastp
803 LYM14 H7 canola|gbl61|DY0246 85 2310 252 81.1 blastp
804 LYM14 H34 cassava 09vl CK6500 18 2311 252 80.1 blastp
805 LYM14 H35 castorbean|09vl |EG65 9029 2312 252 80.43 tblastn
806 LYM14 H8 centaurea|gbl 66|EH71 2821 2313 252 80.1 blastp
807 LYM14 H36 cichorium|gbl71 |EH6 88253 2314 252 80.7 blastp
808 LYM14 Hll cotton|gbl64|AA6599 84 2315 252 80.43 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
809 LYM14 H37 cucumber 09v 1 DN91 0737 2316 252 80.75 tblastn
810 LYM14 H12 ginger|gbl64|DY3589 76 2317 252 83.3 blastp
811 LYM14 H13 iceplant|gbl64|AI8228 35 2318 252 80.75 tblastn
812 LYM14 H14 lettuce gbl57.2 DW15 8376 2319 252 82.3 tblastn
813 LYM14 H15 leymus gbl66 CD8091 80 2320 252 95 blastp
814 LYM14 H38 maize|gbl70|AI78326 0 2321 252 93.8 blastp
815 LYM14 H39 maize|gbl70|AI94167 5 2322 252 95.1 blastp
816 LYM14 H18 melon|gbl65|AM7137 63 2323 252 80.5 tblastn
817 LYM14 H40 monkeyflower|09vl |G 0959633 2324 252 80.12 tblastn
818 LYM14 H41 monkeyflower|09vl |G R111000 2325 252 80.12 tblastn
819 LYM14 H19 papaya|gbl65|EX2611 25 2326 252 81.1 blastp
820 LYM14 H20 radish|gbl64|EW7236 81 2327 252 81.37 tblastn
821 LYM14 H42 solanum phureja|09vl|SPHBG6 28013 2328 252 80.1 blastp
822 LYM14 H43 sorghum 09v 1 SBO1G 038730 2329 252 96 blastp
823 LYM14 H44 sorghum|09vl|SB02G 044050 2330 252 86 blastp
824 LYM14 H23 soybean gb 16 8 AW 5 6 0935 2331 252 80.1 blastp
825 LYM14 H25 spikemoss gbl65 FE43 4307 2332 252 81.06 tblastn
826 LYM14 H45 sugarcane gbl57.3 CA 079818 2333 252 84.2 blastp
827 LYM14 H46 sugarcane gbl57.3 CA 150518 2334 252 93.85 tblastn
828 LYM14 H29 sunflower gb 162 EL4 8 4937 2335 252 80.75 tblastn
829 LYM14 H30 switchgrass gb 167 DN 143407 2336 252 95.4 blastp
830 LYM14 H47 tomato|09vl|BG62801 3 2337 252 80.1 blastp
831 LYM14 H31 wheat|gbl64|BE41600 3 2338 252 83.6 blastp
832 LYM15 H4 brachypodium 09vl D V476162 2339 253 80.2 blastp
833 LYM15 H2 pseudoroegneria gb 16 7|FF343970 2340 253 82 blastp
834 LYM15 H3 wheat|gbl64|BE21329 5 2341 253 81.4 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
835 LYM15 H4 wheat|gbl64|BE49683 3 2342 253 81.4 blastp
836 LYM16H9 barley gbl 57SOLEXA IBE421507 2343 254 90.9 blastp
837 LYM16 H10 brachypodium 09vl D V475217 2344 254 92.7 blastp
838 LYM16H3 fescue gbl61DT6911 10 2345 254 93.9 blastp
839 LYM16 Hll lolium|09vl|AU24687 6 2346 254 84.1 blastp
840 LYD199 maize|gbl70|BI42368 7 2347 254 82.9 blastp
841 LYM16 H12 maize|gbl70|LLFL254 633 2348 254 81.1 tblastn
842 LYM16H5 pseudoroegneria gb 16 7|FF355494 2349 254 92.1 blastp
843 LYM16H6 rye|gbl64|BE494944 2350 254 90.24 tblastn
844 LYM16H7 wheat|gbl64|BE21698 1 2351 254 91.5 blastp
845 LYM16H8 wheat|gbl64|BE41607 1 2352 254 90.9 blastp
846 LYM16H9 wheat|gbl64|BE41811 3 2353 254 91.5 blastp
847 LYM17H6 barley|gbl57SOLEXA |BE602651 2354 255 83.3 blastp
848 LYM17H7 sugarcane gbl57.3 CA 152022 2355 255 80.3 blastp
849 LYM17H3 wheat|gbl64|BE40656 5 2356 255 85.6 blastp
850 LYM17H4 wheat|gbl64|BE42920 9 2357 255 85.6 blastp
851 LYM17H5 wheat|gbl64|BE49071 4 2358 255 86.4 blastp
852 LYM17H6 wheat|gbl64|BQ80319 8 2359 255 85.6 blastp
853 LYM19 H10 barley gbl 57SOLEXA IAL506367 2360 256 86 blastp
854 LYM19 Hll brachypodium 09vl D V476339 2361 256 87.2 blastp
855 LYM19 H3 leymus|gbl66|EG3872 47 2362 256 84.8 blastp
856 LYM19 H5 pseudoroegneria gb 16 7|FF352256 2363 256 86.9 blastp
857 LYM19 H12 sorghum 09v 1 SB05G 009990 2364 256 82.6 blastp
858 LYM19 H7 switchgrass gbl 67 FE6 03507 2365 256 83.6 blastp
859 LYM19 H8 wheat|gbl64|BE39869 2 2366 256 82.7 blastp
860 LYM19 H9 wheat|gbl64|BE58597 9 2367 256 86.28 tblastn
861 LYM19 H10 wheat|gbl64|BU67232 5 2368 256 81.4 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
862 LYM20 H9 barley gbl 57SOLEXA IAL450927 2369 257 86.3 blastp
863 LYM20 H10 brachypodium 09vl D V479896 2370 257 89.1 blastp
864 LYM20 Hll castorbean 09vl XMO 02519056 2371 257 80 blastp
865 LYM20 H12 maize|gbl70|AI85723 6 2372 257 90.1 blastp
866 LYM20 H5 pseudoroegneria gb 16 7|FF343142 2373 257 89 blastp
867 LYM20 H13 sorghum 09v 1 SBO 1G 009140 2374 257 89.7 blastp
868 LYM20 H14 sugarcane gbl57.3 CA 072511 2375 257 83.9 blastp
869 LYM20 H8 switchgrass gbl 67 FE6 54910 2376 257 84.5 blastp
870 LYM20 H9 wheat|gbl64|BE41198 2 2377 257 88.6 blastp
871 LYM21 Hl banana|gbl67|FF5574 36 2378 258 80.9 blastp
872 LYM21 H2 banana|gb 167|FF5594 48 2379 258 80.9 blastp
873 LYM21 H27 barley gbl 57SOLEXA IBE437461 2380 258 88.2 blastp
874 LYM21 H28 brachypodium 09vl D V488150 2381 258 95.5 blastp
875 LYM21 H29 brachypodium 09vl G T760558 2382 258 97.3 blastp
876 LYM21 H5 cenchrus|gbl66|EB655 115 2383 258 91.8 blastp
877 LYM21 H6 fescue gbl61DT6806 31 2384 258 90 blastp
878 LYM21 H7 kiwi|gbl66|FG405276 2385 258 81.8 blastp
879 LYM21 H8 leymus gbl 66 CN4657 70 2386 258 88.2 blastp
880 LYM21 H30 lolium|09vl|AU25028 8 2387 258 90 blastp
881 LYM21 H9 lovegrass gbl67DN48 0337 2388 258 92.7 blastp
882 LYM21 H31 maize|gbl70|AI58645 9 2389 258 93.6 blastp
883 LYM21 H32 millet 09vlEVO454P M000432 2390 258 95.5 blastp
884 LYM21 H33 millet 09vlEVO454P M000947 2391 258 91.8 blastp
885 LYM21 H12 pineapple gbl 57.2 CO 731607 2392 258 82.73 tblastn
886 LYM21 H34 rice gbl70 OS02G473 20 2393 258 87.27 tblastn
887 LYM21 H35 sorghum|09vl|SB02G 006170 2394 258 93.6 blastp
888 LYM21 H36 sorghum 09v 1 SB06G 027500 2395 258 95.5 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
889 LYM21 H37 sugarcane gbl57.3 BQ 529660 2396 258 93.6 blastp
890 LYM21 H38 sugarcane gbl57.3 BQ 535381 2397 258 92.7 blastp
891 LYM21 H39 sugarcane gbl57.3 CA 118830 2398 258 87.3 blastp
892 LYM21 H19 switchgrass gb 167 DN 151016 2399 258 93.6 blastp
893 LYM21 H20 switchgrass gbl67 FL7 22429 2400 258 94.5 blastp
894 LYM21 H21 switchgrass gb 167 FL9 36988 2401 258 95.5 blastp
895 LYM21 H22 tobacco|gbl62|AM791 579 2402 258 88.2 blastp
896 LYM21 H23 wheat|gbl64|BE35263 2 2403 258 89.1 blastp
897 LYM21 H24 wheat|gbl64|BE40279 2 2404 258 89.1 blastp
898 LYM21 H25 wheat|gbl64|BE49257 5 2405 258 89.09 tblastn
899 LYM21 H26 wheat|gbl64|CA48457 5 2406 258 94.5 blastp
900 LYM21 H27 wheat|gbl64|CA61660 9 2407 258 92.73 tblastn
901 LYM24 Hl fescue gbl61DT6811 71 2408 261 80.61 tblastn
902 LYM24 H2 leymus gbl66 CD8086 23 2409 261 80.5 blastp
903 LYM24 H8 maize | gb 170|AI62144 0 2410 261 81 blastp
904 LYM24 H9 pseudoroegneria gb 16 7|FF349814 2411 261 80 blastp
905 LYM24 H10 sorghum 09v 1 SB03G 044280 2412 261 83.1 blastp
906 LYM24 Hll sugarcane gbl57.3 CA 072633 2413 261 82.6 blastp
907 LYM24 H6 switchgrass gb 167 DN 144637 2414 261 84.6 blastp
908 LYM24 H7 switchgrass gb 167 DN 145452 2415 261 85.6 blastp
909 LYM24 H8 wheat|gbl64|BE42590 0 2416 261 80 tblastn
910 LYM26 Hl wheat|gbl64|BE39890 3 2417 262 88.6 blastp
911 LYM30 H5 brachypodium 09v 1 S RR031799S0073966 2418 263 86.5 blastp
912 LYM30 H6 maize|gbl70|AW5201 85 2419 263 85.8 blastp
913 LYM30 H7 maize|gbl70|AW9276 89 2420 263 85 blastp
914 LYM30 H8 rice|gbl70|OSHG025 80 2421 263 99.2 blastp
915 LYM30 H9 rice gbl70 OS12G025 10 2422 263 87.7 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
916 LYM30 H10 sorghum 09v 1 SB05G 001250 2423 263 86.1 blastp
917 LYM30 H5 switchgrass gbl 67 FL7 96240 2424 263 80.16 tblastn
918 LYM31 Hl rice gbl70 QS12G027 10 2425 264 97.9 blastp
919 LYM35 H5 brachypodium 09v 1 S RR031798S0189278 2426 267 80 blastp
920 LYM35 H6 maize|gbl70|BM4168 80 2427 267 89.7 blastp
921 LYM35 H7 sorghum 09v 1 SB06G 031730 2428 267 86.7 blastp
922 LYM35 H8 sugarcane gbl57.3 CA 105471 2429 267 87.5 blastp
923 LYM35 H4 switchgrass gbl 67 FL9 39819 2430 267 89.9 blastp
924 LYM35 H5 wheat|gbl64|BE50050 4 2431 267 86.1 blastp
925 LYM42 HO rice|gbl70|OS01G411 20 2432 273 96.7 blastp
925 LYM42 HO rice|gbl70|OS01G411 20 2432 439 99.83 tblastn
926 LYM43 Hl rice gbl70 QS12G028 00 2433 274 91.4 blastp
927 LYM52 Hl b rapa|gbl62|EX068270 2434 277 94.5 blastp
928 LYM52 H2 fescue gbl61CK8028 23 2435 277 84.4 blastp
929 LYM52 H3 leymus gb 16 6 EG3 794 66 2436 277 96.3 blastp
930 LYM52 H10 maize|gbl70|BE13009 4 2437 277 80 blastp
931 LYM52 Hll maize|gbl70|LLBE05 6010 2438 277 81 blastp
932 LYM52 H12 rice gbl70 QS04G517 92 2439 277 81.4 blastp
933 LYM52 H13 sorghum 09v 1 SB06G 027870 2440 277 82.5 blastp
934 LYM52 H14 sugarcane gbl57.3 AA 577629 2441 277 84.47 tblastn
935 LYM52 H8 switchgrass gb 167 DN 147335 2442 277 82.65 tblastn
936 LYM52 H9 wheat gbl 64 BG90925 9 2443 277 94.5 blastp
937 LYM52 H10 wheat gbl 64 BG90949 3 2444 277 95.1 blastp
938 LYM56 H9 brachypodium 09v 1 S RR031795S0049724 2445 279 85.9 blastp
939 LYM56 H10 maize|gbl70|AI71195 4 2446 279 80.14 tblastn
940 LYM56 H2 pseudoroegneria gb 16 7|FF341776 2447 279 87.9 blastp
941 LYM56 Hll rice gbl70 QS03G457 20 2448 279 80.1 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
942 LYM56 H12 sorghum 09v 1SBO1G 012840 2449 279 81 blastp
943 LYM56 H13 sugarcane gbl57.3 BQ 533995 2450 279 80.14 tblastn
944 LYM56 H6 switchgrass gb 167 FE6 31693 2451 279 84.5 blastp
945 LYM56 H7 switchgrass gb 167 FL7 82747 2452 279 83.1 blastp
946 LYM56 H8 wheat|gbl64|BE40420 7 2453 279 88.7 blastp
947 LYM56 H9 wheat gbl 64 CD91296 3 2454 279 87.8 blastp
948 LYM57 HO brachypodium 09vl D V475724 2455 280 81.1 blastp
949 LYM62 Hl sorghum 09v 1 SB 10G 012150 2456 282 88.9 blastp
950 LYM66 Hl wheat|gbl64|BE40393 2 2457 283 83 blastp
950 LYM66 Hl wheat|gbl64|BE40393 2 2457 440 83 blastp
951 LYM66 H2 wheat|gbl64|BE40540 9 2458 283 90.4 blastp
951 LYM66 H2 wheat|gbl64|BE40540 9 2458 440 90.4 blastp
952 LYM66 H3 wheat|gbl64|CA60026 3 2459 283 90.1 blastp
952 LYM66 H3 wheat|gbl64|CA60026 3 2459 440 90.1 blastp
953 LYM69 HO rice gbl70 OS07G425 20 2460 286 98.3 blastp
954 LYM73 H6 brachypodium 09vl D V481090 2461 287 95.8 blastp
955 LYM73 H7 maize|gbl70|AW2561 55 2462 287 93.7 blastp
956 LYM73 H8 sorghum 09vlSB07G 004300 2463 287 94.3 blastp
957 LYM73 H9 sugarcane gbl57.3 CA 117425 2464 287 94.3 blastp
958 LYM73 H5 switchgrass gb 167 DN 145973 2465 287 94.6 blastp
959 LYM73 H6 wheat|gbl64|AF28925 7S1 2466 287 92.67 tblastn
960 LYM79 H3 brachypodium 09v 1 S RR031800S0005207 2467 289 83.8 blastp
961 LYM79 H4 millet 09vlEVO454P M011117 2468 441 82.72 tblastn
962 LYM79 H5 sorghum 09v 1 SB 10G 012140 2469 289 93 blastp
962 LYM79 H5 sorghum 09v 1 SB 10G 012140 2469 441 93.75 tblastn
963 LYM79 Hl switchgrass gbl 67 FE5 98528 2470 289 90.6 blastp
963 LYM79 Hl switchgrass gbl 67 FE5 98528 2470 441 91.1 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
964 LYM79 H2 switchgrass gbl 67 FL9 57870 2471 441 86.6 tblastn
965 LYM79 H3 wheat|gbl64|BE59051 8 2472 289 80 blastp
965 LYM79 H3 wheat|gbl64|BE59051 8 2472 441 83.33 tblastn
966 LYM82 Hl banatia|gbl67|FF5619 62 2473 290 82.1 blastp
967 LYM82 H12 brachypodium 09vl G T816645 2474 290 94.1 blastp
968 LYM82 H2 leymus gb 16 6 EG3 840 73 2475 290 97.9 blastp
969 LYM82 H13 maize|gbl70|AW1811 52 2476 290 90.6 blastp
970 LYM82 H4 melon|gbl65|AM7182 13 2477 290 80.21 tblastn
971 LYM82 H14 millet 09vlEVO454P M002754 2478 290 82.99 tblastn
972 LYM82 H5 pseudoroegneria gb 16 7|FF352234 2479 290 99 blastp
973 LYM82 H15 rice gbl 70QS06G044 60 2480 290 91 blastp
974 LYM82 H16 sorghum 09v 1 SB 10G 002420 2481 290 90.3 blastp
975 LYM82 H8 soybean gbl 68 CA921 223 2482 290 80.21 tblastn
976 LYM82 H17 sugarcane gbl57.3BU 102729 2483 290 90.3 blastp
977 LYM82 H10 switchgrass gb 167 FL7 44837 2484 290 89.6 blastp
978 LYM82 Hll wheat|gbl64|BE40384 2 2485 290 99 blastp
979 LYM82 H12 wheat|gbl64|CA66078 8 2486 290 99 blastp
980 LYM83 H8 brachypodium 09v 1 S RR031797S0009670 2487 291 86.5 blastp
980 LYM83 H8 brachypodium 09v 1 S RR031797S0009670 2487 442 86.1 blastp
981 LYM83 H9 lolium|09vl|ES699086 2488 291 84.84 tblastn
981 LYM83 H9 lolium|09vl|ES699086 2488 442 84.43 tblastn
982 LYM83 H10 maize|gbl70|AI66534 7 2489 291 82.4 blastp
982 LYM83 H10 maize|gbl70|AI66534 7 2489 442 82.4 blastp
983 LYM83 H3 pseudoroegneria gb 16 7|FF354990 2490 291 97.5 blastp
983 LYM83 H3 pseudoroegneria gb 16 7|FF354990 2490 442 97.1 blastp
984 LYM83 Hll rice gbl70 QS05G453 00 2491 291 81.6 blastp
984 LYM83 Hll rice gbl70 QS05G453 00 2491 442 81.1 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
985 LYM83 H12 sorghum 09v 1 SB09G 026370 2492 291 82 blastp
985 LYM83 H12 sorghum 09v 1 SB09G 026370 2492 442 81.6 blastp
986 LYM83 H6 switchgrass gb167 DN 149383 2493 291 84 blastp
986 LYM83 H6 switchgrass gb167 DN 149383 2493 442 83.6 blastp
987 LYM83 H7 wheat|gbl64|BE51671 5 2494 291 94.7 blastp
987 LYM83 H7 wheat|gbl64|BE51671 5 2494 442 94.3 blastp
988 LYM83 H8 wheat|gbl64|BF42868 8 2495 291 95.1 blastp
988 LYM83 H8 wheat|gbl64|BF42868 8 2495 442 94.7 blastp
989 LYM84 H8 brachypodium 09v 1 S RR031795S0021840 2496 292 92.8 blastp
990 LYM84 H9 maize|gbl70|AW2821 61 2497 292 82.8 blastp
991 LYM84 H10 maize | gb 17 01LLDQ24 5778 2498 292 98.7 blastp
992 LYM84 H4 pseudoroegneria gb 16 7|FF355744 2499 292 98.3 blastp
993 LYM84 Hll rice gbl70 OS03G416 12 2500 292 84.58 tblastn
994 LYM84 H12 sorghum 09v 1 SBO1G 014640 2501 292 82.9 blastp
995 LYM84 H7 switchgrass gb 167 FE6 52995 2502 292 81.3 blastp
996 LYM84 H8 wheat|gbl64|BE41769 7 2503 292 95.1 blastp
997 LYM88 HO arabidopsis lyrata|09vl|JGIAL014 996 2504 294 91.5 blastp
998 LYM89 H5 arabidopsis lyrata|09vl|JGIAL031 299 2505 295 86.36 tblastn
999 LYM89 H2 canola|gbl61|CD8120 18 2506 295 81.8 blastp
1000 LYM89 H3 canola|gbl61|CD8218 97 2507 295 81.8 blastp
1001 LYM89 H4 radish|gbl64|EW7327 98 2508 295 81.65 tblastn
1002 LYM89 H5 radish|gbl64|EX74970 2 2509 295 80.7 blastp
1003 LYM90 H3 brachypodium 09vl D V488904 2510 296 83.2 blastp
1004 LYM90 H2 wheat|gbl64|BQ24215 1 2511 296 94.6 blastp
1005 LYM90 H3 wheat|gbl64|BQ24492 2 2512 296 94.6 blastp
1006 LYM91 Hl rye|gbl64|BE494176 2513 297 82.5 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1007 LYM91 H2 wheat|gbl64|BE40065 9 2514 297 85.4 blastp
1008 LYM91 H3 wheat|gbl64|CA59311 2 2515 297 86.27 tblastn
1009 LYM93 Hl wheat|gbl64|BE40153 5 2516 298 93.6 blastp
1010 LYM93 H2 wheat|gbl64|BE41804 7 2517 298 93.6 blastp
1011 LYM93 H3 wheat|gbl64|CA62407 1 2518 298 84.6 blastp
1012 LYM93 H4 wheat|gbl64|CA67840 5 2519 298 94.55 tblastn
1013 LYM93 H5 wheatgbl64 CJ92017 1 2520 298 88.7 blastp
1014 LYM99 H2 brachypodium 09vl D V482533 2521 299 86.8 blastp
1015 LYM99 H2 wheat|gbl64|AL81899 0 2522 299 94.12 tblastn
1016 LYM100 Hl wheat|gbl64|BE39903 6 2523 301 89.5 blastp
1017 LYM103 H2 sorghum|09vl|SB03G 004410 2524 303 89.69 tblastn
1018 LYM103 H3 sugarcane gbl57.3 CA 078686 2525 303 89.69 tblastn
1019 LYM103 H2 switchgrass gbl 67 FL8 77864 2526 303 87 blastp
1020 LYM105 H5 barley gbl 57SOLEXA IBQ461657 2527 304 90.9 blastp
1021 LYM105 H2 pseudoroegneria gb 16 7|FF366339 2528 304 90.5 blastp
1022 LYM105 H3 wheat|gbl64|BE40533 0 2529 304 90 blastp
1023 LYM105 H4 wheat|gbl64|BE63793 6 2530 304 91.8 blastp
1024 LYM105 H5 wheat|gbl64|BQ74387 5 2531 304 89.4 blastp
1025 LYM106 H8 brachypodium 09vl D V476632 2532 305 80.7 blastp
1026 LYM106 H9 maize | gb 17 01LLDQ24 5927 2533 305 97.9 blastp
1027 LYM106 H3 pseudoroegneria gb 16 7|FF347837 2534 305 96.5 blastp
1028 LYM106 H4 rye|gbl64|BE586535 2535 305 90.3 blastp
1029 LYM106 H5 spruce gbl62DR5435 63 2536 305 84.72 tblastn
1030 LYM106 H6 wheat|gbl64|BE44319 5 2537 305 96.5 blastp
1031 LYM106 H7 wheat|gbl64|BE44526 4 2538 305 97.9 blastp
1032 LYM106 H8 wheat|gbl64|BF48509 8 2539 305 97.2 blastp
1033 LYM110 Hl sugarcane gbl57.3 CA 204413 2540 306 84.3 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1034 LYM111 H7 brachypodium 09vl G T765731 2541 307 80.96 tblastn
1035 LYM111 Hl cenchrus|gbl66|EB657 665 2542 307 87.6 blastp
1036 LYM111 H8 maize|gbl70|AI94154 5 2543 307 89.9 blastp
1037 LYM111 H9 rice gbl70 OS01G570 66 2544 307 81.5 blastp
1038 LYM111 H10 sorghum 09v 1 SB03G 036350 2545 307 91.5 blastp
1039 LYM111 Hll sorghum 09v 1 SB05G 023720 2546 307 93.1 tblastn
1040 LYM111 H12 sugarcane gbl57.3 CA 072460 2547 307 89.38 tblastn
1041 LYM111 H7 switchgrass gbl 67 FL7 11377 2548 307 90.8 blastp
1042 LYM119 Hl sorghum 09vl SB05G 003680 2549 308 93.8 blastp
1043 LYM122 Hl brachypodium 09vl D V469739 2550 310 84.5 blastp
1044 LYM122 Hl pseudoroegneria gb 16 7|FF350527 2551 310 82.53 tblastn
1045 LYM129 H2 brachypodium 09v 1 S RR031795S0005798 2552 315 80.4 blastp
1046 LYM129 H3 maize|gbl70|BQ48626 9 2553 315 82.8 blastp
1047 LYM129 H4 sorghum 09vl SB03G 044510 2554 315 81.6 blastp
1048 LYM129 H2 switchgrass gbl 67 FE6 43628 2555 315 80.6 blastp
1049 LYM130 Hl leymusgbl66EG3779 85 2556 316 80.2 blastp
1050 LYM130 H2 rice gbl70 OS05G043 80 2557 316 99.4 blastp
1051 LYM130 H2 wheat|gbl64|BE41476 7 2558 316 80.8 blastp
1052 LYM131 Hl aquilegia gbl57.3 DR9 17618 2559 317 81.2 blastp
1053 LYM131 H13 barley gbl 57SOLEXA IAL450948 2560 317 83 blastp
1054 LYM131 H14 brachypodium 09vl D V479902 2561 317 85.3 blastp
1055 LYM131 H15 maize|gbl70|AI86132 7 2562 317 90.8 blastp
1056 LYM131 H16 maize|gbl70|AW1298 26 2563 317 82.8 blastp
1057 LYM131 H17 maize|gbl70|AW4531 72 2564 317 91.7 blastp
1058 LYM131 H18 rice gbl70 OS08G127 50 2565 317 85.1 blastp
1059 LYM131 H19 sorghum 09v 1 SB06G 027970 2566 317 91.5 blastp
1060 LYM131 H20 sorghum 09vlSB07G 006320 2567 317 81 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1061 LYM131 H21 sugarcane gbl57.3 CA 068895 2568 317 91.5 blastp
1062 LYM131 Hll switchgrass gbl 67 FE6 07026 2569 317 81.7 blastp
1063 LYM131 H12 switchgrass gb 167 FL7 08944 2570 317 91.49 tblastn
1064 LYM131 H13 wheat|gbl64|BE41225 7 2571 317 83.7 blastp
1065 LYM134 HO rice gbl70 QS04G569 90 2572 319 98.8 blastp
1066 LYM137 H2 amborella|gbl66|CK7 58151 2573 321 85.1 blastp
1067 LYM137 H3 antirrhinum|gb 16 61AJ7 88115 2574 321 83.7 blastp
1068 LYM137 H4 antirrhinum|gb 16 61AJ7 91024 2575 321 83 blastp
1069 LYM137 H5 antirrhinum|gb 16 61AJ7 93144 2576 321 83.01 tblastn
1070 LYM137 H217 apple|gbl71|CN44533 3 2577 321 81 blastp
1071 LYM137 H218 apple gbl71CN48901 9 2578 321 82.4 blastp
1072 LYM137 H219 apple gbl 71 CN49188 8 2579 321 81.8 blastp
1073 LYM137 H10 aquilegia gbl57.3 DT7 29599 2580 321 82.7 blastp
1074 LYM137 H220 arabidopsis lyrata|09vl|BQ834082 2581 321 81.8 blastp
1075 LYM137 H221 arabidopsis lyrata|09vl|BQ834260 2582 321 80.5 blastp
1076 LYM137 H222 arabidopsis lyrata|09vl|JGIAL015 196 2583 321 80.5 blastp
1077 LYM137 Hll arabidopsis gb 165 AT 3G55280 2584 321 81.2 blastp
1078 LYM137 H12 artemisia|gb 164|EY 03 5831 2585 321 85 blastp
1079 LYM137 H13 avocado gbl 64 CO995 706 2586 321 85.3 blastp
1080 LYM137 H14 avocado gbl 64 CV460 574 2587 321 84.6 blastp
1081 LYM137 H15 b juncea gbl 64 EVGN0 0185312102498 2588 321 83.8 blastp
1082 LYM137 H16 b juncea gbl 64 EVGN0 0317014862029 2589 321 81.2 blastp
1083 LYM137 H17 b juncea gbl 64 EVGN0 1375409582897 2590 321 81.2 blastp
1084 LYM137 H223 b nigra|09vl|GT069407 2591 321 81.2 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1085 LYM137 H18 b olerace a| gb 1611 AM 3 9 2244 2592 321 81.2 blastp
1086 LYM137 H19 b olerace a|gb 161 |DY 014 383 2593 321 83.8 blastp
1087 LYM137 H20 b olerace a|gb 161 |DY 023 491 2594 321 83.8 blastp
1088 LYM137 H21 b olerace a|gb 161 |DY 023 494 2595 321 81.2 blastp
1089 LYM137 H22 b olerace a|gb 161 |DY 027 443 2596 321 81.2 blastp
1090 LYM137 H23 b oleracea|gbl61|EE535 717 2597 321 80.5 blastp
1091 LYM137 H24 b rapa|gbl62|BG543640 2598 321 83.77 tblastn
1092 LYM137 H25 b rapa|gbl62|BQ791808 2599 321 80.5 blastp
1093 LYM137 H26 b rapa|gbl62|CA991997 2600 321 81.2 blastp
1094 LYM137 H27 b rapa|gbl62|CV432555 2601 321 81.2 blastp
1095 LYM137 H28 b rapa|gbl62|CV432912 2602 321 81.2 blastp
1096 LYM137 H29 b rapa|gbl62|CV432918 2603 321 83.8 blastp
1097 LYM137 H30 b rapa|gbl62|CX267185 2604 321 81.2 blastp
1098 LYM137 H31 b rapa|gbl62|CX271342 2605 321 81.2 blastp
1099 LYM137 H32 banana|gbl67|DN2395 14 2606 321 85.7 blastp
1100 LYM137 H33 banana|gbl67|ES4316 62 2607 321 86.4 blastp
1101 LYM137 H34 banana|gbl67|FF5581 02 2608 321 85.7 blastp
1102 LYM137 H35 banana|gbl67|FF5587 29 2609 321 86.4 blastp
1103 LYM137 H36 banana|gbl67|FF5608 01 2610 321 85.7 blastp
1104 LYM137 H37 banana|gbl67|FL6573 44 2611 321 85.8 blastp
1105 LYM137 H38 basilicum gb 157.3 DY 342616 2612 321 80.5 blastp
1106 LYM137 H39 beangbl67 CA897728 2613 321 85 blastp
1107 LYM137 H40 beangbl67 CA897730 2614 321 83.1 blastp
1108 LYM137 H41 beet|gbl62|BF011189 2615 321 82.5 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1109 LYM137 H42 beetgbl62 BI096284 2616 321 84.4 blastp
1110 LYM137 H224 brachypodium 09vl D V476457 2617 321 96.1 blastp
1111 LYM137 H225 brachypodium 09vl D V489152 2618 321 96.1 blastp
1112 LYM137 H45 cacao gbl67CA79579 8 2619 321 83.7 blastp
1113 LYM137 H46 cacao gbl67CU47679 8 2620 321 83.8 blastp
1114 LYM137 H47 canola|gbl61|CD8116 40 2621 321 83.8 blastp
1115 LYM137 H48 canola|gbl61|CD8122 85 2622 321 81.2 blastp
1116 LYM137 H49 canola|gbl61|CD8123 12 2623 321 81.2 blastp
1117 LYM137 H50 canola|gbl61|CD8125 01 2624 321 81.2 blastp
1118 LYM137 H51 canola|gbl61|CD8154 20 2625 321 81.2 blastp
1119 LYM137 H52 canola|gbl61|CD8169 02 2626 321 81.2 blastp
1120 LYM137 H53 canola|gbl61|CD8175 91 2627 321 81.2 blastp
1121 LYM137 H54 canola|gbl61|CD8216 63 2628 321 83.8 blastp
1122 LYM137 H55 canola|gbl61|CN7260 29 2629 321 83.8 blastp
1123 LYM137 H56 canola|gbl61|CN7310 28 2630 321 81.2 blastp
1124 LYM137 H57 canola|gbl61|EE47936 8 2631 321 83.8 blastp
1125 LYM137 H58 canola|gbl61|H07535 2632 321 83.8 blastp
1126 LYM137 H226 cassava|09vl|CK6437 71 2633 321 83.1 blastp
1127 LYM137 H227 cassava 09vl CK6474 92 2634 321 83.8 blastp
1128 LYM137 H228 cassava 09vl DV4553 55 2635 321 81.8 blastp
1129 LYM137 H229 castorbean|09vl |EG70 0188 2636 321 85 blastp
1130 LYM137 H230 castorbean 09vl ΧΜ0 02531924 2637 321 84.9 blastp
1131 LYM137 H63 c atharanthus | gb 1661E G556131 2638 321 82.6 blastp
1132 LYM137 H64 c atharanthus | gb 1661E G557604 2639 321 82.6 blastp
1133 LYM137 H65 cenchrus|gbl66|EB652 612 2640 321 93.4 blastp
1134 LYM137 H66 centaurea|gbl 66|EH71 5158 2641 321 83 blastp
1135 LYM137 H67 centaurea|gbl66|EH73 7696 2642 321 84.3 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1136 LYM137 H68 centaurea|gbl66|EH74 6709 2643 321 82.5 blastp
1137 LYM137 H231 chestout gb 170 SRRO0 6295S0004667 2644 321 83.8 blastp
1138 LYM137 H232 chestnut gbl 70 SRRO0 6295S0010167 2645 321 83.1 blastp
1139 LYM137 H233 chickpea|09v2|FE6692 44 2646 321 85.6 blastp
1140 LYM137 H234 chickpea|09v2|FE6716 15 2647 321 85.6 blastp
1141 LYM137 H235 cichorium |gb 171 DT2 10912 2648 321 84.3 blastp
1142 LYM137 H236 cichorium|gbl71 |EH6 81883 2649 321 84.4 blastp
1143 LYM137 H237 cichorium|gbl71 |EH6 96050 2650 321 83.8 blastp
1144 LYM137 H72 citrus|gbl66|CB61057 8 2651 321 83.7 blastp
1145 LYM137 H73 citrus|gbl66|CN18341 5 2652 321 82.9 blastp
1146 LYM137 H74 coffea|gbl57.2|DV663 668 2653 321 85 blastp
1147 LYM137 H75 cotton gbl64AI72852 2 2654 321 84.3 blastp
1148 LYM137 H76 cotton gbl64AI72953 1 2655 321 85 blastp
1149 LYM137 H77 cotton|gbl64|BE05571 9 2656 321 83 blastp
1150 LYM137 H78 cotton|gbl64|BF26964 1 2657 321 84.3 blastp
1151 LYM137 H79 cotton|gb 164|BG4414 96 2658 321 81.8 blastp
1152 LYM137 H80 cowpea|gbl66|BE3362 50 2659 321 83.9 blastp
1153 LYM137 H81 cowpea gb 166 FF3 823 48 2660 321 85.1 blastp
1154 LYM137 H82 cowpea gbl 66 FF3912 67 2661 321 86.9 blastp
1155 LYM137 H83 cryptomeria|gb 1661 BP 176442 2662 321 80.5 blastp
1156 LYM137 H84 cryptomeri a| gb 16 61B W996322 2663 321 81.2 blastp
1157 LYM137 H238 cucumber 09v 1 BGI45 4H0165031 2664 321 81.6 blastp
1158 LYM137 H239 cucumber 09vl CKO 85 893 2665 321 83.7 blastp
1159 LYM137 H240 cucumber 09vl DV63 2825 2666 321 85 blastp
1160 LYM137 H85 cynara|gbl67|GE5881 38 2667 321 84.4 blastp
1161 LYM137 H86 dandelion gb 161 DY 8 04086 2668 321 85.1 blastp
1162 LYM137 H87 dandelion gb 161 DY 8 13115 2669 321 83.8 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1163 LYM137 H88 eucalyptus gbl 66 CT9 80143 2670 321 83.1 blastp
1164 LYM137 H89 eucalyptus gbl 66 CT9 81000 2671 321 81.3 blastp
1165 LYM137 H90 fescue gbl61DT6864 72 2672 321 80.9 blastp
1166 LYM137 H241 flax|09vl|EU829592 2673 321 81 blastp
1167 LYM137 H242 gerbera 09vl AJ75070 7 2674 321 85.6 blastp
1168 LYM137 H243 gerbera 09vl AJ75312 7 2675 321 84.31 tblastn
1169 LYM137 H244 gerbera 09vl AJ75544 0 2676 321 81.7 blastp
1170 LYM137 H91 ginger|gbl64|DY3520 00 2677 321 85.5 blastp
1171 LYM137 H92 ginger|gbl64|DY3569 13 2678 321 83.7 blastp
1172 LYM137 H93 grape|gbl60|CA81633 5 2679 321 80.6 blastp
1173 LYM137 H94 grape|gbl60|CB34828 9 2680 321 81.3 blastp
1174 LYM137 H95 grape|gbl60|CB97964 1 2681 321 84.5 blastp
1175 LYM137 H96 iceplant|gbl64|CA834 927 2682 321 82.5 blastp
1176 LYM137 H97 ipomoe a gb 15 7.2 BU6 90174 2683 321 82.2 blastp
1177 LYM137 H98 ipomoea gbl 57.2 CJ73 8553 2684 321 82.9 blastp
1178 LYM137 H245 jatropha|09vl|GO2473 33 2685 321 85.6 blastp
1179 LYM137 H99 kiwi|gbl66|FG413271 2686 321 83.1 blastp
1180 LYM137 H100 kiwi|gbl66|FG421995 2687 321 84.2 blastp
1181 LYM137 H101 kiwi|gbl66|FG429490 2688 321 83.9 blastp
1182 LYM137 H102 kiwi|gbl66|FG461535 2689 321 84.2 blastp
1183 LYM137 H103 kiwigbl66 FG501757 2690 321 83.6 blastp
1184 LYM137 H104 lettuce gbl57.2CV700 088 2691 321 83.8 blastp
1185 LYM137 H105 lettuce gbl57.2 DW04 6053 2692 321 83 blastp
1186 LYM137 H106 lettuce gbl57.2 DW04 9273 2693 321 83.8 blastp
1187 LYM137 H107 lettuce gbl57.2 DW07 7894 2694 321 83.8 blastp
1188 LYM137 H108 lettuce gbl57.2 DW08 0256 2695 321 83.7 blastp
1189 LYM137 H109 lettuce gbl57.2 DW08 0360 2696 321 83.1 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1190 LYM137 H110 lettuce gbl57.2 DW11 2293 2697 321 83.8 blastp
1191 LYM137 Hill lettuce gbl57.2 DW14 5178 2698 321 83.8 blastp
1192 LYM137 H112 leymus gbl66 CD8092 09 2699 321 98.7 blastp
1193 LYM137 H246 liquorice gbl71FS239 986 2700 321 83.9 blastp
1194 LYM137 H113 liriodendron|gbl66|CK 743367 2701 321 85.3 blastp
1195 LYM137 H247 lolium|09vl|AU25101 2 2702 321 97.4 blastp
1196 LYM137 H248 lotus|09vl|LLBG6622 85 2703 321 85 blastp
1197 LYM137 H249 lotus|09vl|LLBI41868 7 2704 321 83.9 blastp
1198 LYM137 H250 lotus 09vl LLG00069 21 2705 321 83.7 blastp
1199 LYM137 H115 lovegrass gb 167 EH 18 3574 2706 321 92.8 blastp
1200 LYM137 H116 lovegrass gb 167 EH 18 5967 2707 321 90.1 blastp
1201 LYM137 H251 maize|gbl70|AA97982 2 2708 321 93.4 blastp
1202 LYM137 H252 maize|gbl70|AI61234 9 2709 321 94.7 blastp
1203 LYM137 H253 maize|gbl70|EY96202 7 2710 321 82.89 tblastn
1204 LYM137 H254 maize|gbl70|LLBG32 0994 2711 321 94.1 blastp
1205 LYM137 H255 maize | gb 17 01LLDQ24 5209 2712 321 99.3 blastp
1206 LYM137 H256 maize | gb 17 01LLDQ24 5775 2713 321 81.2 blastp
1207 LYM137 H257 maize|gbl70|T18742 2714 321 93.4 blastp
1208 LYM137 H258 medicago 09vl AW20 8139 2715 321 85.1 blastp
1209 LYM137 H259 medicago 09vl AW28 7975 2716 321 83.6 blastp
1210 LYM137 H260 medicago|09vl |LLAJ8 46422 2717 321 82.47 tblastn
1211 LYM137 H127 melon|gbl65|DV6328 25 2718 321 85 blastp
1212 LYM137 H128 melon|gbl65|DV6329 19 2719 321 83.7 blastp
1213 LYM137 H261 millet 09vl CD725778 2720 321 94.7 blastp
1214 LYM137 H262 millet 09vlEVO454P M001999 2721 321 91.4 blastp
1215 LYM137 H263 monkeyflower|09vl |D V211090 2722 321 81.3 blastp
1216 LYM137 H264 monkeyflower|09vl |G 0948368 2723 321 81.3 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1217 LYM137 H129 nicotiana benthamiana| gb 1621E S 885186 2724 321 85.7 blastp
1218 LYM137 H130 nuphar|gb 166|FD3 861 60 2725 321 85.8 blastp
1219 LYM137 H265 oakgbl70 CU656727 2726 321 83.1 blastp
1220 LYM137 H266 oak gbl70 SRR006307 S0003551 2727 321 83.8 blastp
1221 LYM137 H131 oat|gbl64|CN814837 2728 321 98 blastp
1222 LYM137 H132 oil palm|gbl66|CN59945 7 2729 321 87.2 blastp
1223 LYM137 H133 oil palm|gbl66|EL688664 2730 321 84.5 blastp
1224 LYM137 H134 oniongbl62 CF45144 2 2731 321 85.2 blastp
1225 LYM137 H135 papaya|gbl65|EX2389 83 2732 321 83.1 blastp
1226 LYM137 H136 papaya|gbl65|EX2817 27 2733 321 84.3 blastp
1227 LYM137 H267 peanutgbl71 CD0380 36 2734 321 84.4 blastp
1228 LYM137 H268 peanutgbl71 CD0380 42 2735 321 83.2 blastp
1229 LYM137 H269 peanut gbl 71EH0429 12 2736 321 85.1 blastp
1230 LYM137 H270 pea|09vl|EX570565 2737 321 83.7 blastp
1231 LYM137 H271 pepper gbl 71 BM0631 92 2738 321 83 blastp
1232 LYM137 H272 pepper gbl71CA5184 36 2739 321 81.8 blastp
1233 LYM137 H273 petuniagbl71 CV2988 26 2740 321 83 blastp
1234 LYM137 H274 petunia gbl 71CV2990 96 2741 321 83.7 blastp
1235 LYM137 H275 petunia|gbl71|FN0076 57 2742 321 83.1 blastp
1236 LYM137 H276 poplar|gb 1701 Al 16182 2 2743 321 81.8 blastp
1237 LYM137 H277 poplar|gb 1701 Al16481 2 2744 321 80.4 blastp
1238 LYM137 H278 poplar|gbl70|CN5176 15 2745 321 81.58 tblastn
1239 LYM137 H150 poppy gbl 66 FE96448 2 2746 321 82.6 blastp
1240 LYM137 H151 poppy gbl 66 FE96848 9 2747 321 83.9 blastp
1241 LYM137 H152 potato|gbl57.2|BE923 747 2748 321 83.7 blastp
1242 LYM137 H153 potato|gbl57.2|BF459 639 2749 321 83.7 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1243 LYM137 H155 potato|gbl57.2|BI4070 78 2750 321 82.5 blastp
1244 LYM137 H156 potato|gbl57.2|BQ046 658 2751 321 82.5 blastp
1245 LYM137 H157 prunus gbl67 BU0480 09 2752 321 83.8 blastp
1246 LYM137 H158 prunus gbl67 BU5726 74 2753 321 83.8 blastp
1247 LYM137 H159 pseudoroegneria gb 16 7|FF344271 2754 321 98.7 blastp
1248 LYM137 H160 radish|gbl64|EV52441 2 2755 321 82.5 blastp
1249 LYM137 H161 radish|gbl64|EV52673 2 2756 321 81.2 blastp
1250 LYM137 H162 radish|gbl64|EV52780 6 2757 321 81.2 blastp
1251 LYM137 H163 radish|gbl64|EV53694 9 2758 321 81.2 blastp
1252 LYM137 H164 radish|gbl64|EV53908 7 2759 321 83.1 blastp
1253 LYM137 H165 radish|gbl64|EV54524 8 2760 321 81.2 blastp
1254 LYM137 H166 radish|gbl64|EV57049 2 2761 321 81.2 blastp
1255 LYM137 H167 radish|gbl64|EW7244 65 2762 321 81.2 blastp
1256 LYM137 H168 radish|gbl64|EW7247 37 2763 321 83.1 blastp
1257 LYM137 H169 radish|gbl64|EW7319 70 2764 321 81.2 blastp
1258 LYM137 H170 radish|gbl64|EW7327 28 2765 321 81.2 blastp
1259 LYM137 H171 radish|gbl64|EX75564 1 2766 321 80.4 blastp
1260 LYM137 H172 radish|gbl64|EX75678 4 2767 321 83.8 blastp
1261 LYM137 H173 radish|gbl64|EX75782 4 2768 321 81.2 blastp
1262 LYM137 H279 rice gbl70 OS01G246 90 2769 321 92.2 blastp
1263 LYM137 H280 rice gbl70 OS04G422 70 2770 321 94.1 blastp
1264 LYM137 H176 rye|gbl64|BE493987 2771 321 100 blastp
1265 LYM137 H177 safflower gbl 62 EL37 8228 2772 321 82.4 blastp
1266 LYM137 H178 safflower gbl 62 EL39 9454 2773 321 83.8 blastp
1267 LYM137 H179 safflower|gbl 62|EL41 1711 2774 321 81.7 blastp
1268 LYM137 H281 senecio|gbl70|DY666 439 2775 321 83.01 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1269 LYM137 H282 solanum phureja|09vl|SPHAA8 24956 2776 321 82.5 blastp
1270 LYM137 H283 solanum phureja|09vl|SPHBQl 15070 2777 321 82.69 tblastn
1271 LYM137 H284 solanum phureja|09vl|SPHTO M289A 2778 321 83.7 blastp
1272 LYM137 H285 sorghum 09v 1 SB06G 021660 2779 321 94.7 blastp
1273 LYM137 H286 sorghum 09v 1 SB 10G 005240 2780 321 94.1 blastp
1274 LYM137 H182 soybean|gbl68|AL365 737 2781 321 85.6 blastp
1275 LYM137 H183 soybean gbl 68 AW20 8139 2782 321 84.3 blastp
1276 LYM137 H184 soybean gbl68 AW28 7975 2783 321 85.6 blastp
1277 LYM137 H185 soybean|gbl68|BE336 250 2784 321 81.9 blastp
1278 LYM137 H186 soybean|gbl68|BE336 251 2785 321 84.5 blastp
1279 LYM137 H187 soybean gbl 68 BI9675 38 2786 321 85 blastp
1280 LYM137 H188 spurge gbl 61 BI99357 4 2787 321 83.8 blastp
1281 LYM137 H189 strawberry gb 164 CO3 78565 2788 321 83.7 blastp
1282 LYM137 H190 strawberry) gbl 64|EX6 85316 2789 321 82.5 blastp
1283 LYM137 H287 sugarcane gbl57.3 AI2 16927 2790 321 94.7 blastp
1284 LYM137 H288 sugarcane gbl57.3 BQ 535570 2791 321 92.8 blastp
1285 LYM137 H289 sugarcane gbl57.3 BQ 535956 2792 321 94.1 blastp
1286 LYM137 H290 sugarcane gbl57.3 BQ 537453 2793 321 93.4 blastp
1287 LYM137 H291 sugarcane gbl57.3 CA 106878 2794 321 94.7 blastp
1288 LYM137 H292 sugarcane gbl57.3 CA 111839 2795 321 93.4 blastp
1289 LYM137 H293 sugarcane gbl57.3 CA 113465 2796 321 92.11 tblastn
1290 LYM137 H198 sunflower gb 162 CD8 46067 2797 321 84.3 blastp
1291 LYM137 H199 sunflower gb 162 CD8 48213 2798 321 84.3 blastp
1292 LYM137 H200 sunflower gb 162 CD8 51130 2799 321 85.6 blastp
1293 LYM137 H201 sunflower gb 162 CD8 53875 2800 321 83.8 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1294 LYM137 H202 switchgrass gb 167 DN 140751 2801 321 92.8 blastp
1295 LYM137 H203 switchgrass gb 167 DN 143966 2802 321 90.8 blastp
1296 LYM137 H204 switchgrass gbl 67 FE6 03312 2803 321 91.4 blastp
1297 LYM137 H205 switchgrass gbl 67 FE6 45253 2804 321 92.8 blastp
1298 LYM137 H294 teagbl71 GE652357 2805 321 84.52 tblastn
1299 LYM137 H295 teagbl71 GH613259 2806 321 81.2 blastp
1300 LYM137 H206 thellungiella gb 167 D N773656 2807 321 81.2 blastp
1301 LYM137 H207 tobacco gb 162 DV157 653 2808 321 82.5 blastp
1302 LYM137 H208 tobacco|gbl62|EB444 171 2809 321 85.1 blastp
1303 LYM137 H209 tobacco|gbl62|EB445 443 2810 321 85.6 blastp
1304 LYM137 H210 tobacco gbl 62 EB679 214 2811 321 83.8 blastp
1305 LYM137 H211 tobacco|gbl62|TOBRP L25A 2812 321 85.7 blastp
1306 LYM137 H296 tomato 09v 1 AA82495 6 2813 321 81.8 blastp
1307 LYM137 H297 tomato 109 v 11 BQ 115 0 7 0 2814 321 83.8 blastp
1308 LYM137 H298 tomato 09vl TOM289 A 2815 321 83.7 blastp
1309 LYM137 H214 wheat|gbl64|BE40186 0 2816 321 99.3 blastp
1310 LYM137 H215 wheat|gbl64|BE40351 6 2817 321 99.3 blastp
1311 LYM137 H216 wheat|gbl64|BE40448 8 2818 321 99.3 blastp
1312 LYM137 H217 wheat|gbl64|CA61289 8 2819 321 82.89 tblastn
1313 LYM137 H299 zinnia|gbl71|AU3044 73 2820 321 83 blastp
1314 LYM140 H18 apple gbl 71 CN87400 7 2821 322 80.1 blastp
1315 LYM140 Hl banana|gbl67|ES4337 90 2822 322 80 tblastn
1316 LYM140 H19 brachypodium 09vl D V472528 2823 322 90.3 blastp
1317 LYM140 H20 cassava 09vl BM2597 38 2824 322 80.3 blastp
1318 LYM140 H21 cassava 09vl CK6408 86 2825 322 80.3 blastp
1319 LYM140 H22 castorbean|09vl |EG65 6528 2826 322 80.4 blastp
1320 LYM140 H23 chestnut gbl70 SRR00 6295S0060343 2827 322 80 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1321 LYM140 H24 chestout gb 170 SRRO0 6296S0039724 2828 322 80.49 tblastn
1322 LYM140 H4 citrus|gbl66|CB29047 9 2829 322 80.3 blastp
1323 LYM140 H5 cotton gb 164 BF27194 2 2830 322 81.4 blastp
1324 LYM140 H6 cotton gb 164 CA9926 95 2831 322 80.1 blastp
1325 LYM140 H7 cowpea gb 166 FC4597 91 2832 322 80.48 tblastn
1326 LYM140 H25 maize|gbl70|AW3312 87 2833 322 89.2 blastp
1327 LYM140 H9 oil palm|gbl66|ES414711 2834 322 80.8 blastp
1328 LYM140 H10 papayagbl65 EX2277 99 2835 322 80 blastp
1329 LYM140 Hll radish|gbl64|EV52827 2 2836 322 80.3 blastp
1330 LYM140 H26 rice gbl70 OS04G532 10 2837 322 88.6 blastp
1331 LYM140 H27 sorghum 09v 1 SB06G 028990 2838 322 88.9 blastp
1332 LYM140 H13 soybean gb 16 8 AW 12 6193 2839 322 80 blastp
1333 LYM140 H28 sugarcane gbl57.3 CA 071893 2840 322 88.1 blastp
1334 LYM140 H15 sunflower gb 162 BU6 71805 2841 322 80.1 blastp
1335 LYM140 H16 switchgrass gbl 67 FE6 24047 2842 322 90.5 blastp
1336 LYM140 H17 wheat|gbl64|BE41572 6 2843 322 98.1 blastp
1337 LYM140 H18 wheat|gbl64|BF20061 3 2844 322 86.7 blastp
1338 LYM141 HO rice gbl70 OS12G029 10 2845 323 86.6 blastp
1339 LYM142 H7 barley gbl 57SOLEXA |BQ761869 2846 324 86.6 blastp
1340 LYM142 H8 brachypodium 09vl D V478753 2847 324 86.8 blastp
1341 LYM142 H3 leymus gb 166 EG4015 96 2848 324 97.7 blastp
1342 LYM142 H4 pseudoroegneria gb 16 7|FF362922 2849 324 97.7 blastp
1343 LYM142 H9 rice gbl70 OS02G335 50 2850 324 83.9 blastp
1344 LYM142 H6 wheat|gbl64|BE40484 3 2851 324 94.4 blastp
1345 LYM142 H7 wheat|gbl64|CA63146 7 2852 324 83.9 blastp
1346 LYM144 HO brachypodium 09vl G T775853 2853 326 80.6 blastp
1347 LYM148 H10 brachypodium 09vl D V478384 2854 328 91.1 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1348 LYM148 H2 leymus|gbl66|EG3989 61 2855 328 92.73 tblastn
1349 LYM148 Hll maize|gbl70|AW0600 86 2856 328 84.5 blastp
1350 LYM148 H12 millet 09vlEVO454P M023692 2857 328 82.9 blastp
1351 LYM148 H13 rice gb 170 OS06G454 40 2858 328 82.4 blastp
1352 LYM148 H14 sorghum 09v 1 SB 10G 026570 2859 328 83.3 blastp
1353 LYM148 H6 switchgrass gb 167 FE6 04043 2860 328 82.5 blastp
1354 LYM148 H7 switchgrass gb 167 FE6 41627 2861 328 81.1 blastp
1355 LYM148 H8 wheat|gbl64|BE44289 6 2862 328 96.3 blastp
1356 LYM148 H9 wheat|gbl64|BQ29525 9 2863 328 97 blastp
1357 LYM148 H10 wheat|gbl64|BQ78864 1 2864 328 97 blastp
1358 LYM149 H5 brachypodium 09vl D V488199 2865 329 83.2 blastp
1359 LYM149 H2 pseudoroegneria gb 16 7|FF346387 2866 329 87 blastp
1360 LYM149 H3 wheat|gbl64|BE42905 2 2867 329 87.2 blastp
1361 LYM149 H4 wheat|gbl64|BQ62013 8 2868 329 87.5 blastp
1362 LYM149 H5 wheat|gbl64|CA64142 4 2869 329 89.69 tblastn
1363 LYM152 H14 arabidopsis lyrata|09vl|BQ834051 2870 330 86.7 blastp
1364 LYM152 H15 arabidopsis lyrata|09vl|JGIAL030 307 2871 330 96.7 blastp
1365 LYM152 Hl arabidopsis gb 165 AT 4G25890 2872 330 82.5 tblastn
1366 LYM152 H2 b oleracea|gb 161 |DY 027 305 2873 330 95 blastp
1367 LYM152 H3 b olerace a gb 161 DY 028 937 2874 330 93.4 blastp
1368 LYM152 H4 b rapa|gbl62|BG544013 2875 330 94.17 tblastn
1369 LYM152 H5 brapa|gbl62|L35776 2876 330 92.6 blastp
1370 LYM152 H6 b rapa|gbl62|L35823 2877 330 95 blastp
1371 LYM152 H7 canola|gbl61|CD8120 96 2878 330 94.2 blastp
1372 LYM152 H8 canola|gbl61|CD8125 52 2879 330 95 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1373 LYM152 H9 canolagbl61 CD8170 37 2880 330 95 blastp
1374 LYM152 H10 canola|gbl61|CD8303 47 2881 330 92.6 blastp
1375 LYM152 H12 radish|gbl64|EV54823 5 2882 330 92.5 blastp
1376 LYM152 H13 radish|gbl64|EW7181 96 2883 330 92.5 blastp
1377 LYM152 H14 thelhmgiella gb 16 7 B M985697 2884 330 91.7 blastp
1378 LYM153 H6 barley gbl 57SOLEXA IBF625242 2885 331 81.5 blastp
1379 LYM153 H7 brachypodium 09v 1 S RR031796S0027091 2886 331 81.5 blastp
1380 LYM153 H2 cenchrus|gbl66|EB654 758 2887 331 80 blastp
1381 LYM153 H8 millet 09vlEVO454P M017552 2888 331 83.1 blastp
1382 LYM153 H9 sorghum 09v 1 SB 10G 003440 2889 331 81.5 blastp
1383 LYM153 H4 switchgrass gb 167 FE6 34744 2890 331 83.1 blastp
1384 LYM153 H5 wheat gbl 64 CD49095 1 2891 331 94.03 tblastn
1385 LYM153 H6 wheat|gbl64|CK21566 0 2892 331 80.3 tblastn
1386 LYM156 H6 barley gbl 57SOLEXA IAL506124 2893 332 96.1 blastp
1387 LYM156 H7 barley gbl 57SOLEXA IBE195142 2894 332 93.1 blastp
1388 LYM156 H3 pseudoroegneria gb 16 7|FF346665 2895 332 92.8 blastp
1389 LYM156 H4 pseudoroegneria gb 16 7|FF354463 2896 332 86.3 blastp
1390 LYM156 H8 rice gbl70 QS07G468 30 2897 332 80 blastp
1391 LYM156 H6 wheat|gbl64|BE63788 8 2898 332 91.8 blastp
1392 LYM157 Hl barley gbl 57SOLEXA IBG299283 2899 333 94.9 blastp
1393 LYM159 Hl wheat|gbl64|CA59814 8 2900 334 81.01 tblastn
1394 LYM159 H2 wheat|gbl64|CD86603 7 2901 334 87.7 blastp
1395 LYM159 H3 wheat|gbl64|CD86735 6 2902 334 86.4 blastp
1396 LYM160 Hl wheat gbl 64 BE39999 7 2903 335 87.6 tblastn
1397 LYM160 H2 wheat|gbl64|BE50020 0 2904 335 80 blastp
1398 LYM161 HO brachypodium 09vl D V471902 2905 336 81.9 blastp
1398 LYM161 HO brachypodium 09vl D V471902 2905 444 81.02 tblastn
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1399 LYM162 H5 maize|gbl70|AW3311 05 2906 337 84.8 blastp
1400 LYM162 H6 millet 09vlEVO454P M026751 2907 337 85.7 blastp
1401 LYM162 H7 sorghum 09vl SB03G 043995 2908 337 87.5 blastp
1402 LYM162 H8 sugarcane gbl57.3 BQ 536349 2909 337 87.5 blastp
1403 LYM162 H4 switchgrass gbl 67 FL7 38992 2910 337 83.9 blastp
1404 LYM162 H5 switchgrass gbl 67 FL8 29126 2911 337 85.7 blastp
1405 LYM165 H5 maize | gb 17 01LLCO4 5 2769 2912 339 99.2 blastp
1406 LYM165 H6 sorghum 09vl SB03G 030690 2913 339 89.2 blastp
1407 LYM165 H7 sugarcane gbl57.3 BQ 529806 2914 339 81.1 blastp
1408 LYM165 H8 sugarcane gbl57.3 CA 084294 2915 339 90.4 blastp
1409 LYM165 H4 switchgrass gb 167 DN 143471 2916 339 85.9 blastp
1410 LYM165 H5 switchgrass gb 167 DN 144101 2917 339 85.7 blastp
1411 LYM166 Hl brachypodium 09vl D V486893 2918 340 85.4 tblastn
1411 LYM166 Hl brachypodium 09vl D V486893 2918 445 85.36 tblastn
1412 LYM170 H7 barley gbl 57SOLEXA AV915706 2919 341 91.6 blastp
1413 LYM170 H8 brachypodium 09v 1 S RR031797S0049196 2920 341 94.8 blastp
1414 LYM170 H9 maize|gbl70|AI66590 2 2921 341 87.3 blastp
1415 LYM170 H10 maize|gbl70|BE05062 8 2922 341 86.4 blastp
1416 LYM170 Hll sorghum 09v 1 SB03G 036440 2923 341 87.3 blastp
1417 LYM170 H12 sugarcane gbl57.3 CA 067017 2924 341 88.3 blastp
1418 LYM170 H6 switchgrass gb 167 DN 142710 2925 341 87.3 blastp
1419 LYM170 H7 wheat|gbl64|BE41537 1 2926 341 93.5 blastp
1420 LYM172 Hll brachypodium 09vl D V489358 2927 342 87.6 blastp
1421 LYM172 H12 maize gbl70AA97977 0 2928 342 81.7 blastp
1422 LYM172 H13 maize|gbl70|AI71196 6 2929 342 81.2 blastp
1423 LYM172 H14 maize|gbl70|AI94752 1 2930 342 80.71 tblastn
1424 LYM172 H15 maize|gbl70|AW1201 45 2931 342 82.9 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1425 LYM172 H16 millet 09vlEVO454P M002481 2932 342 85.6 tblastn
1426 LYM172 H17 rice gbl70 OS02G083 64 2933 342 81.8 blastp
1427 LYM172 H18 sorghum 09v 1 SB04G 005430 2934 342 80.43 tblastn
1428 LYM172 H19 sorghum 09v 1 SB 10G 025800 2935 342 83.9 blastp
1429 LYM172 H20 sugarcane gbl57.3 CA 071007 2936 342 80.1 blastp
1430 LYM172 H9 switchgrass gbl 67 FL6 92588 2937 342 80.7 blastp
1431 LYM172 H10 wheat|gbl64|BE40076 1 2938 342 81.25 tblastn
1432 LYM172 Hll wheat gbl 64 BE49886 8 2939 342 87.77 tblastn
1433 LYM213 Hl switchgrass gbl 67 FE6 20008 2940 343 80.4 blastp
1433 LYM213 Hl switchgrass gbl 67 FE6 20008 2940 386 88.7 blastp
1434 LYM174 H3 maize | gb 1701 AW 1449 17 2941 344 89.4 blastp
1435 LYM174 H4 maize|gbl70|AW2673 79 2942 344 86.6 blastp
1436 LYM174 H5 sugarcane gbl57.3 CA 089309 2943 344 92.31 tblastn
1437 LYM174 H3 switchgrass gb 167 DN 150662 2944 344 80.9 blastp
1438 LYM175 HO maize|gbl70|AW4984 64 2945 345 81.2 blastp
1439 LYM175 Hl rice gbl70 OS01G690 90 2946 345 95 blastp
1439 LYM175 Hl rice gbl70 OS01G690 90 2946 446 100 blastp
1440 LYM215 H2 sorghum|09vl|SB03G 043980 2947 345 81.2 blastp
1440 LYM215 H2 sorghum|09vl|SB03G 043980 2947 387 94.6 blastp
1441 LYM176 H2 maize|gbl70|CA45271 3 2948 346 82.2 blastp
1442 LYM176 H3 sorghum|09vl|SB03G 036470 2949 346 83 blastp
1443 LYM176 H2 switchgrass gbl 67 FE6 06366 2950 346 82 blastp
1444 LYM178 H9 brachypodium 09vl D V472161 2951 347 84.9 blastp
1445 LYM178 H10 brachypodium 09v 1 S RR031797S0177787 2952 347 84.6 blastp
1446 LYM178 Hl fescue gbl61DT6744 27 2953 347 89.4 blastp
1447 LYM178 H2 leymus gb 16 6 EG3945 91 2954 347 84.08 tblastn
1448 LYM178 Hll maize|gbl70|W21746 2955 347 83.4 blastp
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1449 LYM178 H12 millet 09vlEVO454P M001531 2956 347 83.1 blastp
1450 LYM178 H3 pseudoroegneria gb 16 7|FF358503 2957 347 93.6 blastp
1451 LYM178 H13 sorghum|09vl|SB03G 008890 2958 347 83.1 blastp
1452 LYM178 H14 sorghum 09vlSB07G 001060 2959 347 81.9 blastp
1453 LYM178 H15 sugarcane gbl57.3 CA 066169 2960 347 82.4 blastp
1454 LYM178 H16 sugarcane gbl57.3 CA 079726 2961 347 83.1 blastp
1455 LYM178 H8 switchgrass gbl 67 FE6 36508 2962 347 82.4 blastp
1456 LYM178 H9 wheat|gbl64|BQ62075 2 2963 347 94.7 blastp
1457 LYM179 HO sorghum|09vl|SB08G 006470 2964 348 86.5 blastp
1458 LYM107 H2 brachypodium 09vl G T808738 2965 349 86.9 blastp
1459 LYM107 H3 maize|gbl70|CF07558 7 2966 349 95.2 blastp
1460 LYM107 H4 rice gbl70 OS05G266 60 2967 349 86.4 blastp
1461 LYM107 H5 sorghum|09vl|SB03G 036480 2968 349 95 blastp
1462 LYM109 Hl maize|gbl70|BG51716 3 2969 350 82.62 tblastn
1462 LYM109 Hl maize|gbl70|BG51716 3 2969 447 82.6 tblastn
1463 LYM109 H2 sorghum 09vl SB05G 003660 2970 350 88.75 tblastn
1463 LYM109 H2 sorghum 09vl SB05G 003660 2970 447 88.87 tblastn
1464 LYM112 Hl maize|gbl70|CF03732 2 2971 351 95.4 blastp
1464 LYM112 Hl maize|gbl70|CF03732 2 2971 448 93.96 tblastn
1465 LYM112 H2 sorghum|09vl|SB02G 039985 2972 351 92.43 tblastn
1465 LYM112 H2 sorghum|09vl|SB02G 039985 2972 448 84.8 blastp
1466 LYM115 HO sorghum 09v 1 SBO1G 043900 2973 353 90.19 tblastn
1467 LYM116 H3 sorghum 09v 1 SB06G 031340 2974 354 88.2 blastp
1468 LYM116 H2 switchgrass gbl 67 FE6 53493 2975 354 80.88 tblastn
1469 LYM116 H3 switchgrass gbl 67 FL7 90906 2976 354 80.88 tblastn
1470 LYM117 H2 maize|gbl70|GFXAF2 43041X1 2977 355 84.4 blastp
1470 LYM117 H2 maize|gbl70|GFXAF2 43041X1 2977 449 84.5 blastp
100
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1471 LYM117 H3 sorghum 09vlSB07G 027220 2978 355 82.3 blastp
1471 LYM117 H3 sorghum 09vlSB07G 027220 2978 449 82.3 blastp
1472 LYM121 Hl rice gbl70 OS12G026 20 2979 357 90.6 blastp
1473 LYM123 H4 barley gbl 57SOLEXA IAF268595 2980 358 85.5 blastp
1474 LYM123 H5 brachypodium 09vl G T761722 2981 358 84 blastp
1475 LYM123 H6 maize | gb 170|AI79555 8 2982 358 85.2 blastp
1476 LYM123 H7 sorghum 09v 1 SB06G 031680 2983 358 86.3 blastp
1477 LYM123 H4 wheat|gbl64|BE40187 1 2984 358 85.6 blastp
1478 LYM135 Hl brachypodium 09vl D V480514 2985 359 93.1 blastp
1479 LYM135 H2 maize|gbl70|CB88566 7 2986 359 80.2 blastp
1480 LYM135 H3 sorghum 09v 1 SB 10G 007850 2987 359 84.1 blastp
1481 LYM138 H2 brachypodium 09vl G T810825 2988 360 84 blastp
1482 LYM138 H3 maize|gbl70|AI61233 3 2989 360 86.17 tblastn
1483 LYM138 H4 sorghum 09v 1 SB06G 031570 2990 360 86.33 tblastn
1484 LYM146 H2 brachypodium 09v 1 S RR031798S0143459 2991 361 84.3 blastp
1485 LYM146 H3 rice gbl70 OS03G217 30 2992 361 86.4 blastp
1486 LYM146 H4 sorghum 09v 1 SBO 1G 036160 2993 361 96 blastp
1487 LYM147 HO sorghum 09vl SB03G 003200 2994 362 82 blastp
1488 LYM154 HO wheat|gbl64|BE50057 1 2995 363 82.5 blastp
1489 LYM155 H3 brachypodium 09vl D V479969 2996 364 84.7 blastp
1489 LYM155 H3 brachypodium 09vl D V479969 2996 451 83.5 blastp
1490 LYM155 H4 rice gbl70 OS03G588 90 2997 364 81.3 blastp
1490 LYM155 H4 rice gbl70 OS03G588 90 2997 451 80 blastp
1491 LYM155 H3 wheat|gbl64|BQ80101 9 2998 364 92.3 blastp
1491 LYM155 H3 wheat|gbl64|BQ80101 9 2998 451 91.6 blastp
1492 LYM180 HO brachypodium 09vl D V473436 2999 365 82.9 blastp
1492 LYM180 HO brachypodium 09vl D V473436 2999 452 83.54 tblastn
101
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1493 LYM181 H3 brachypodium 09vl D V485149 3000 366 85.3 blastp
1493 LYM181 H3 brachypodium 09vl D V485149 3000 453 84.68 tblastn
1494 LYM181 H4 maize|gbl70|DR45221 6 3001 366 80.8 blastp
1494 LYM181 H4 maize|gbl70|DR45221 6 3001 453 81.25 tblastn
1495 LYM181 H5 rice |gbl70|OS07G320 10 3002 366 82.8 blastp
1496 LYM181 H6 sorghum|09vl|SB02G 034110 3003 366 83.5 blastp
1497 LYM181 H2 wheat|gbl64|BE42537 7 3004 453 87.16 tblastn
1498 LYM181 H3 wheat|gbl64|BG90502 8 3005 453 93.58 tblastn
1499 LYM182 H8 brachypodium 09vl G T780326 3006 367 87.64 tblastn
1500 LYM182 H9 maize|gbl70|AI79573 7 3007 367 84.27 tblastn
1501 LYM182 H10 millet 09vlEVO454P M084568 3008 367 82.02 tblastn
1502 LYM182 Hll rice gbl70 QS04G333 00 3009 367 82.02 tblastn
1503 LYM182 H12 sorghum 09v 1 SB06G 015280 3010 367 83.15 tblastn
1504 LYM182 H13 sugarcane gbl57.3 CA 066047 3011 367 83.15 tblastn
1505 LYM182 H6 switchgrass gbl 67 FE6 10729 3012 367 82.02 tblastn
1506 LYM182 H7 switchgrass gbl 67 FL6 99214 3013 367 83.15 tblastn
1507 LYM182 H8 wheat|gbl64|BF20013 6 3014 367 95.51 tblastn
1508 LYM184 H5 brachypodium 09vl D V476770 3015 454 82.68 tblastn
1509 LYM184 H6 brachypodium 09vl G T762544 3016 454 82.61 tblastn
1510 LYM184 H7 brachypodium 09v 1 S RR031799S0153720 3017 454 82.68 tblastn
1511 LYM184 H3 leymus gb 16 6 EG3 851 50 3018 454 84.8 blastp
1512 LYM184 H8 maize | gb 17 01AI69121 0 3019 382 100 blastp
1512 LYM184 H8 maize | gb 17 01AI69121 0 3019 454 80.87 tblastn
1513 LYM206 H2 sorghum 09vlSB07G 021090 3020 382 84.5 blastp
1513 LYM206 H2 sorghum 09vlSB07G 021090 3020 454 80.52 tblastn
1514 LYM184 H4 switchgrass gbl 67 FL7 04827 3021 454 80.5 blastp
1515 LYM184 H5 wheat|gbl64|AL82125 4 3022 368 82.66 tblastn
102
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1515 LYM184 H5 wheat|gbl64|AL82125 4 3022 454 86.96 tblastn
1516 LYM185 Hl pseudoroegneria gb 16 7|FF360278 3023 455 91.53 tblastn
1517 LYM185 H2 wheat gbl 64 BG90607 7 3024 455 85.31 tblastn
1518 LYM186 H4 brachypodium 09vl G T761126 3025 370 90.7 blastp
1519 LYM186 H5 maize|gbl70|BE55288 7 3026 370 82.5 tblastn
1520 LYM186 H6 rice gbl70 QS10G399 30 3027 370 86.3 blastp
1521 LYM186 H7 sorghum 09v 1 SBO 1G 030050 3028 370 86.5 blastp
1522 LYM186 H4 wheat|gbl64|BE42942 5 3029 370 97.6 blastp
1523 LYM188 H8 brachypodium 09vl D V475481 3030 371 92.4 blastp
1523 LYM188 H8 brachypodium 09vl D V475481 3030 456 89.41 tblastn
1524 LYM188 H9 maize|gbl70|AI62272 6 3031 371 87.2 blastp
1524 LYM188 H9 maize|gbl70|AI62272 6 3031 456 83.47 tblastn
1525 LYM188 H10 maize|gbl70|AW4248 65 3032 371 86 blastp
1525 LYM188 H10 maize|gbl70|AW4248 65 3032 456 83.9 tblastn
1526 LYM188 Hll millet 09vlEVO454P M011140 3033 456 85.17 tblastn
1527 LYM188 H3 pseudoroegneria gb 16 7|FF341644 3034 456 80.5 blastp
1528 LYM188 H12 rice gbl70 QS03G539 60 3035 371 88.2 blastp
1528 LYM188 H12 rice gbl70 QS03G539 60 3035 456 84.75 tblastn
1529 LYM188 H13 sorghum 09v 1SBO 1G 007950 3036 371 87.4 blastp
1529 LYM188 H13 sorghum 09v 1 SBO 1G 007950 3036 456 84.32 tblastn
1530 LYM188 H14 sugarcane gbl57.3 BQ 530106 3037 371 87.4 blastp
1530 LYM188 H14 sugarcane gbl57.3 BQ 530106 3037 456 84.32 tblastn
1531 LYM188 H7 switchgrass gbl 67 FL7 09807 3038 456 84.32 tblastn
1532 LYM188 H8 wheat gbl 64 CA74294 0 3039 456 81.78 tblastn
1533 LYM193 Hl leymus gb 166 EG3 819 14 3040 459 87.1 tblastn
1534 LYM193 H2 wheat|gbl64|BQ23667 8 3041 459 85.26 tblastn
1535 LYM194 HO brachypodium 09v 1 S RR031796S0004815 3042 375 84.8 blastp
103
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1536 LYM194 Hl maize|gbl70|BQ53910 2 3043 375 82.1 blastp
1537 LYM194 H2 sorghum 09v 1 SB06G 015320 3044 375 84.9 blastp
1538 LYM194 H3 switchgrass gbl 67 FE6 45079 3045 375 82.9 blastp
1539 LYM194 H4 wheat|gbl64|BE51807 8 3046 375 96.3 blastp
1540 LYM197 H2 sugarcane gbl57.3 BQ 536804 3047 377 88.57 tblasta
1541 LYM198 Hl sorghum 09v 1 SBO1G 045460 3048 378 85.5 blastp
1542 LYM201 Hl aquilegia gbl57.3 DR9 15888 3049 379 82.4 blastp
1543 LYM201 H19 arabidopsis lyrata|09vl|JGIAL022 871 3050 379 80.07 tblasta
1544 LYM201 H2 artemisia|gb 164|EY 03 3288 3051 379 80.5 blastp
1545 LYM201 H3 b rapa|gbl62|CV433700 3052 379 80.3 blastp
1546 LYM201 H20 brachypodium 09vl D V471345 3053 379 93.8 blastp
1547 LYM201 H21 brachypodium 09vl G T759255 3054 379 81.2 blastp
1548 LYM201 H22 cassava 09v 1 DQ1383 70 3055 379 82.2 blastp
1549 LYM201 H23 cassava 09vl FF38053 9 3056 379 81.3 blastp
1550 LYM201 H24 castorbean|09vl |EE25 6048 3057 379 81.4 blastp
1551 LYM201 H25 che stnut gb 17 0 S RRO 0 6295S0006313 3058 379 80.6 blastp
1552 LYM201 H7 cotton|gbl64|AI72837 8 3059 379 81.7 blastp
1553 LYM201 H8 cotton gb 164 C00709 70 3060 379 82 blastp
1554 LYM201 H26 cucumber 09vl AM73 1598 3061 379 81.7 blastp
1555 LYM201 H27 lotus 09vlBI41943 7 3062 379 80.5 blastp
1556 LYM201 H28 maize|gbl70|AI97825 4 3063 379 98.2 blastp
1557 LYM201 H29 maize|gbl70|DR97111 8 3064 379 80.1 blastp
1558 LYM201 H30 medicago 09v 1 AW68 4099 3065 379 80.7 blastp
1559 LYM201 H31 oakgbl70 CU656181 3066 379 82.56 tblasta
1560 LYM201 H32 poplar|gbl70|BI06963 7 3067 379 81.3 blastp
1561 LYM201 H33 poplar|gbl70|BU8871 51 3068 379 80.7 blastp
104
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1562 LYM201 H34 rice |gbl70|OS02G345 60 3069 379 95.2 blastp
1563 LYM201 H35 solanum phureja|09vl|SPHBGl 23984 3070 379 81.4 blastp
1564 LYM201 H36 solanum phureja|09vl|SPHBGl 29477 3071 379 81.2 blastp
1565 LYM201 H37 sorghum 09v 1 SB04G 022350 3072 379 98.4 blastp
1566 LYM201 H15 soybean gb 168 AL3 67 670 3073 379 80.7 blastp
1567 LYM201 H16 soybean gbl 68 AW68 4099 3074 379 80.5 blastp
1568 LYM201 H38 sugarcane gbl57.3 CA 065291 3075 379 98.6 blastp
1569 LYM201 H18 switchgrass gbl 67 FE6 41755 3076 379 98.2 blastp
1570 LYM201 H39 tomato|09vl|BG12398 4 3077 379 81.4 blastp
1571 LYM201 H40 tomato|09vl|BG12947 7 3078 379 81.2 blastp
1572 LYM201 H19 wheat|gbl64|BE40316 8 3079 379 93.2 blastp
1573 LYM203 H9 barley gbl 57SOLEXA IBI949918 3080 380 84.7 blastp
1574 LYM203 H10 lolium|09vl|AU24700 9 3081 380 85.2 blastp
1575 LYM203 Hll maize|gbl70|AI62967 5 3082 380 95.7 blastp
1576 LYM203 H12 millet 09vlEVO454P M058394 3083 380 81.7 blastp
1577 LYM203 H13 rice gbl70 QS02G083 80 3084 380 89.2 blastp
1578 LYM203 H14 sorghum 09v 1 SB04G 005460 3085 380 96.8 blastp
1579 LYM203 H15 sugarcane gbl57.3 CA 119568 3086 380 94.1 blastp
1580 LYM203 H6 switchgrass gb 167 DN 142920 3087 380 95.2 blastp
1581 LYM203 H7 switchgrass gbl 67 FE6 17741 3088 380 95.7 blastp
1582 LYM203 H8 wheat|gbl64|BQ80196 6 3089 380 85.7 blastp
1583 LYM203 H9 wheat|gbl64|BQ90323 0 3090 380 86.2 blastp
1584 LYM206 H3 maize|gbl70|AW0559 97 3091 382 84.1 blastp
1585 LYM207 H2 maize|gbl70|BM3402 89 3092 383 86.5 blastp
1586 LYM207 H3 sorghum 09v 1 SB06G 023870 3093 383 94.3 blastp
1587 LYM207 H2 switchgrass gbl 67 FE6 01320 3094 383 82.3 blastp
105
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1588 LYM208 H6 maize |gb 17 01AI6913 6 8 3095 384 94.4 blastp
1589 LYM208 H7 rice gbl70 OS09G016 90 3096 384 82 blastp
1590 LYM208 H8 sorghum 09v 1 SBO1G 032070 3097 384 92.1 blastp
1591 LYM208 H9 sorghum|09vl|SB08G 002510 3098 384 86.6 blastp
1592 LYM208 H5 switchgrass gbl 67 FE6 12629 3099 384 90.4 blastp
1593 LYM208 H6 switchgrass gbl 67 FL7 29765 3100 384 90.4 blastp
1594 LYM212 H6 barley gbl 57SOLEXA |BF623682 3101 385 80.3 blastp
1595 LYM212 H7 maize|gbl70|AI67747 4 3102 385 88.5 blastp
1596 LYM212 H8 rice gbl70 OS03G079 10 3103 385 80.11 tblastn
1597 LYM212 H9 sorghum 09v 1 SBO 1G 045480 3104 385 92.5 blastp
1598 LYM212 H10 sugarcane gbl57.3 CA 088789 3105 385 92 blastp
1599 LYM212 H6 wheat|gbl64|BE40224 2 3106 385 80.38 tblastn
1600 LYM213 Hl maize|gbl70|AW2822 49 3107 386 90.9 blastp
1601 LYM213 H2 sorghum 09v 1 SB06G 018770 3108 386 91.7 blastp
1602 LYM215 H2 switchgrass gbl 67 FE6 18086 3109 387 90.42 tblastn
1603 LYM217 H3 sorghum 09v 1 SBO 1G 043910 3110 388 88.2 blastp
1604 LYM217 H4 sugarcane gbl57.3 CA 136491 3111 388 87.7 blastp
1605 LYM217 H3 switchgrass gbl 67 FE6 06442 3112 388 86.7 blastp
1606 LYM221 Hl brachypodium 09vl G T792319 3113 391 83.8 blastp
1606 LYM221 Hl brachypodium 09vl G T792319 3113 461 81.3 blastp
1607 LYM221 H2 rice gbl70 OS03G248 70 3114 391 82.9 blastp
1607 LYM221 H2 rice gbl70 OS03G248 70 3114 461 80.5 blastp
1608 LYM221 H3 sorghum 09v 1 SBO 1G 034610 3115 391 90.7 blastp
1608 LYM221 H3 sorghum 09v 1 SBO 1G 034610 3115 461 88.7 blastp
1609 LYM224 H2 brachypodium 09vl G T762108 3116 393 82.4 blastp
1610 LYM224 H3 sorghum|09vl|SB02G 040000 3117 393 92.9 blastp
1611 LYM224 H2 switchgrass gbl 67 FE6 17506 3118 393 83.19 tblastn
106
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1612 LYM227 Hl sorghum 09v 1 SBO1G 043140 3119 394 88.3 blastp
1613 LYM228 Hl sorghum 09vl SB09G 006910 3120 395 85 blastp
1613 LYM228 Hl sorghum 09vl SB09G 006910 3120 462 83.7 blastp
1614 LYM232 H3 sorghum|09vl|SB02G 000450 3121 396 80.4 blastp
1615 LYM232 H4 sugarcane gbl57.3 CA 073189 3122 396 80.8 blastp
1616 LYM232 H3 switchgrass gbl 67 FL8 49399 3123 396 80.7 blastp
1617 LYM233 HO brachypodium 09v 1 T MPLOS01G70020T1 3124 397 99.6 blastp
1618 LYM234 HO rice gbl70 OS07G382 90 3125 398 81.3 blastp
1619 LYM236 H99 apple|gbl71|CN48856 8 3126 399 89.1 blastp
1620 LYM236 H100 apple|gbl71|CN88310 0 3127 399 89.6 blastp
1621 LYM236 H3 aquilegia gbl57.3 DR9 19774 3128 399 87.4 blastp
1622 LYM236 H101 arabidopsis lyrata|09vl|JGIAL005 113 3129 399 83.9 blastp
1623 LYM236 H102 arabidopsis lyrata|09vl|JGIAL006 646 3130 399 86.89 tblastn
1624 LYM236 H4 arabidopsis gb 165 AT 1G54340 3131 399 83.5 blastp
1625 LYM236 H5 arabidopsis gb 165 AT 1G65930 3132 399 87.1 blastp
1626 LYM236 H6 artemisia|gb 164|EY 03 4635 3133 399 87.9 blastp
1627 LYM236 H7 avocado gbl 64 CO995 120 3134 399 91.3 blastp
1628 LYM236 H8 b olerace a gb 161 DY 028 218 3135 399 87.2 blastp
1629 LYM236 H9 b rapa|gbl62|CX269094 3136 399 87.2 blastp
1630 LYM236 H10 b rapa|gbl62|GFXAF25 8246X1 3137 399 84.3 tblastn
1631 LYM236 Hll b rapa|gbl62|L47856 3138 399 87.2 blastp
1632 LYM236 H103 barley gbl 57SOLEXA IAL502504 3139 399 89.3 blastp
1633 LYM236 H13 basilicum gb 157.3 DY 322368 3140 399 87.7 blastp
1634 LYM236 H14 bean gbl 67 |CA896841 3141 399 87.9 blastp
1635 LYM236 H104 brachypodium 09vl D V478973 3142 399 85.3 blastp
107
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1636 LYM236 H105 brachypodium 09vl D V482439 3143 399 90.5 blastp
1637 LYM236 H17 cacao|gbl67|DQ44887 5 3144 399 89.2 blastp
1638 LYM236 H18 canola|gbl61|BQ7049 58 3145 399 87.2 blastp
1639 LYM236 H19 canola|gbl61|CD8173 40 3146 399 87.2 blastp
1640 LYM236 H20 canola|gbl61|CD8331 08 3147 399 83.9 blastp
1641 LYM236 H21 canola|gbl61|CX1894 42 3148 399 86.5 blastp
1642 LYM236 H22 canola|gbl61|DY0113 90 3149 399 87.2 blastp
1643 LYM236 H106 cassava|09vl|CK6426 10 3150 399 90.1 blastp
1644 LYM236 H107 cassava 09vl DV4579 42 3151 399 87.5 blastp
1645 LYM236 H108 castorbean|09vl |EE25 6632 3152 399 86.1 blastp
1646 LYM236 H109 castorbean|09vl |EE25 9479 3153 399 90.6 blastp
1647 LYM236 H26 centaurea|gbl66|EH73 1203 3154 399 81.2 blastp
1648 LYM236 H27 centaurea|gbl66|EL93 2337 3155 399 86.6 blastp
1649 LYM236 H110 che stout gb 17 0 S RRO 0 6295S0002580 3156 399 82.27 tblastn
1650 LYM236 Hill che stout gb 17 0 S RRO 0 6295S0002701 3157 399 89.6 blastp
1651 LYM236 H112 cichorium|gbl71 |EH6 75189 3158 399 87.3 blastp
1652 LYM236 H113 cichorium|gbl71 |EH6 83726 3159 399 89.1 blastp
1653 LYM236 H30 citrus|gbl66|AF17666 9 3160 399 90.6 blastp
1654 LYM236 H31 citrus|gbl66|CD57391 1 3161 399 85.1 blastp
1655 LYM236 H32 coffeagbl57.2 DV663 279 3162 399 87.8 blastp
1656 LYM236 H33 cotton|gbl64|AI72726 0 3163 399 87.2 blastp
1657 LYM236 H34 cotton|gbl64|BF27858 8 3164 399 83.5 blastp
1658 LYM236 H35 cowpea gb 166 FC45 81 36 3165 399 89.1 blastp
1659 LYM236 H36 cynara|gbl67|GE5772 43 3166 399 86.47 tblastn
1660 LYM236 H37 cynara|gbl67|GE5796 63 3167 399 88.6 blastp
1661 LYM236 H38 dandelion gb 161 DY 8 04243 3168 399 86.96 tblastn
1662 LYM236 H39 eucalyptus gb 166 X97 063 3169 399 88 blastp
108
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1663 LYM236 H40 fescue gbl 61 |CK8010 45 3170 399 89.8 blastp
1664 LYM236 H41 fescue gbl61DT6747 24 3171 399 90 blastp
1665 LYM236 H42 ginger|gbl64|DY3602 89 3172 399 91.3 blastp
1666 LYM236 H43 grape|gbl60|BM43675 5 3173 399 89.9 blastp
1667 LYM236 H44 kiwi|gbl66|FG396670 3174 399 88.2 blastp
1668 LYM236 H45 kiwigbl66 FG397107 3175 399 88.7 blastp
1669 LYM236 H46 kiwigbl66 FG397291 3176 399 89.4 blastp
1670 LYM236 H47 lettuce gbl57.2 DW08 8948 3177 399 87.4 blastp
1671 LYM236 H48 leymus gbl66 CD8091 60 3178 399 89.6 blastp
1672 LYM236 H49 liriodendron|gbl66|CK 762229 3179 399 88.2 blastp
1673 LYM236 H114 lotus|09vl|AW428686 3180 399 89.4 blastp
1674 LYM236 H115 lotus 09vl BP033879 3181 399 83.7 blastp
1675 LYM236 H51 lovegrass gbl67DN48 0596 3182 399 90.8 blastp
1676 LYM236 H116 maize|gbl70|AI60081 5 3183 399 93.7 blastp
1677 LYM236 H117 maize|gbl70|AW3132 97 3184 399 92.2 blastp
1678 LYM236 H118 maize|gbl70|W21690 3185 399 91.3 blastp
1679 LYM236 H119 medicago 09v 1 AW 19 1201 3186 399 88.2 blastp
1680 LYM236 H120 medicago 09v 1 AW68 9032 3187 399 84.9 blastp
1681 LYM236 H121 millet 09vl CD725798 3188 399 92.5 blastp
1682 LYM236 H122 millet 09vlEVO454P M002708 3189 399 94.2 blastp
1683 LYM236 H123 monkeyflower|09vl |D V206036 3190 399 87.4 blastp
1684 LYM236 H56 nicotiana benthamiana|gb 1621C K291144 3191 399 86.5 blastp
1685 LYM236 H57 oil palm|gbl66|EL684429 3192 399 87.3 blastp
1686 LYM236 H124 peanutgbl71 CD0386 82 3193 399 87.9 blastp
1687 LYM236 H125 pea|09vl|CD860585 3194 399 89.6 blastp
1688 LYM236 H126 pepper gb 171 BM0617 61 3195 399 88 blastp
109
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1689 LYM236 H127 pepper gb 171 CA5165 82 3196 399 85.3 blastp
1690 LYM236 H128 petunia gbl 71DC2402 08 3197 399 88.2 blastp
1691 LYM236 H129 physcomitrella| 1 Ον 11A W497149 3198 399 82.2 blastp
1692 LYM236 H62 pine|gbl57.2|AW0102 92 3199 399 85.6 blastp
1693 LYM236 H63 pine|gbl57.2|BX2498 26 3200 399 85.6 blastp
1694 LYM236 H130 poplar gb 170 Al 16195 6 3201 399 89.6 blastp
1695 LYM236 H131 poplar gbl70BI12770 6 3202 399 86.6 blastp
1696 LYM236 H132 poplar|gb 17 01 BI 13161 0 3203 399 86.8 blastp
1697 LYM236 H133 poplar|gbl70|BU8210 63 3204 399 90.4 blastp
1698 LYM236 H66 potato gbl 57.2 BG591 093 3205 399 88 blastp
1699 LYM236 H67 prunusgbl67AF3674 43 3206 399 89.4 blastp
1700 LYM236 H68 radish|gbl64|EV52684 7 3207 399 85.8 blastp
1701 LYM236 H69 radish|gbl64|EV53122 5 3208 399 86.9 blastp
1702 LYM236 H134 rice gbl70 OS01G145 80 3209 399 84.8 blastp
1703 LYM236 H135 rice gbl70 OS01G466 10 3210 399 93 blastp
1704 LYM236 H72 rye|gbl64|BE494776 3211 399 86.17 tblastn
1705 LYM236 H73 safflower gbl 62 EL37 2795 3212 399 87.3 blastp
1706 LYM236 H74 safflower gbl 62 EL37 4725 3213 399 89.1 blastp
1707 LYM236 H136 solanum phureja|09vl|SPHBGl 31802 3214 399 86.3 blastp
1708 LYM236 H137 solanum phureja|09vl|SPHBG6 29432 3215 399 87.7 blastp
1709 LYM236 H138 sorghum 09vl SB03G 029840 3216 399 92 blastp
1710 LYM236 H139 sorghum 09vl SB09G 029110 3217 399 94.7 blastp
1711 LYM236 H77 soybean gbl 68 AW25 7518 3218 399 88.7 blastp
1712 LYM236 H78 soybean gbl 68 AW68 9032 3219 399 85.6 blastp
1713 LYM236 H79 soybean gbl 68 FF554 826 3220 399 84.7 blastp
1714 LYM236 H80 soybean gbl68SOYID H 3221 399 89.4 blastp
110
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1715 LYM236 H81 spikemoss gbl65 FE44 1231 3222 399 84.2 blastp
1716 LYM236 H82 spikemoss gbl65 FE44 3181 3223 399 82.3 blastp
1717 LYM236 H83 spruce gbl 62 CO2258 56 3224 399 85 blastp
1718 LYM236 H84 strawberry gbl 64DV4 38767 3225 399 82.6 blastp
1719 LYM236 H140 sugarcane gbl57.3BU 103347 3226 399 94.5 blastp
1720 LYM236 H141 sugarcane gbl57.3 CA 070718 3227 399 92.5 blastp
1721 LYM236 H87 sunflower gb 162 CD8 46861 3228 399 86.6 blastp
1722 LYM236 H88 sunflower gb 162 CD8 54278 3229 399 87.9 blastp
1723 LYM236 H89 switchgrass gb 167 DN 142415 3230 399 92 blastp
1724 LYM236 H90 switchgrass gb 167 DN 143508 3231 399 95.4 blastp
1725 LYM236 H91 switchgrass gb 167 DN 150237 3232 399 95.2 blastp
1726 LYM236 H92 switchgrass gb 167 DN 151575 3233 399 92.2 blastp
1727 LYM236 H93 thellungiella|gb 167|D N774112 3234 399 87.14 tblastn
1728 LYM236 H94 tobacco|gbl62|DV158 343 3235 399 83.3 blastp
1729 LYM236 H95 tobacco gbl62X77944 3236 399 88.5 blastp
1730 LYM236 H142 tomato|09vl|BG13180 2 3237 399 85.6 blastp
1731 LYM236 H143 tomato|09vl|BG62943 2 3238 399 87.3 blastp
1732 LYM236 H98 triphysaria|gbl64|DRl 71747 3239 399 88.4 blastp
1733 LYM236 H99 wheat|gbl64|BE44254 0 3240 399 84.1 blastp
1734 LYM238 HO rice gbl70 QS05G450 80 3241 400 95.4 blastp
1735 LYM240 H9 barley gbl 57SOLEXA IAL508021 3242 402 91.9 blastp
1736 LYM240 H10 brachypodium 09vl G T810642 3243 402 91.9 blastp
1737 LYM240 Hll maize gbl70DR97279 0 3244 402 84.2 blastp
1738 LYM240 H12 sorghum|09vl|SB02G 038240 3245 402 84.2 blastp
1739 LYM240 H13 sugarcane gbl57.3 CA 075929 3246 402 82.3 blastp
1740 LYM240 H6 switchgrass gbl 67 FE5 97498 3247 402 81.6 blastp
1741 LYM240 H7 switchgrass gbl 67 FE6 10847 3248 402 80 blastp
111
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1742 LYM240 H8 switchgrass gbl 67 FL9 60804 3249 402 81.6 blastp
1743 LYM240 H9 wheat gbl 64 CA67449 1 3250 402 89.93 tblastn
1744 LYM242 H7 barley gbl 57SOLEXA IBE412570 3251 404 82.2 blastp
1745 LYM242 H8 brachypodium 09vl G T764573 3252 404 86.1 blastp
1746 LYM242 H9 maize|gbl70|AI74605 3 3253 404 83.4 blastp
1747 LYM242 H10 millet 09vlEVO454P M008771 3254 404 85 blastp
1748 LYM242 Hll sorghum|09vl|SB03G 003160 3255 404 82.6 blastp
1749 LYM242 H12 sugarcane gbl57.3 BQ 534251 3256 404 83.8 blastp
1750 LYM242 H5 switchgrass gb 167 DN 143169 3257 404 85.1 blastp
1751 LYM242 H6 switchgrass gbl 67 FE6 54179 3258 404 85 blastp
1752 LYM242 H7 wheat|gbl64|BE40328 5 3259 404 82.6 blastp
1753 LYM248 H3 brachypodium 09vl G T773582 3260 407 84.5 blastp
1754 LYM248 H4 maize|gbl70|AI96695 7 3261 407 88.5 blastp
1755 LYM248 H5 sorghum 09vl SB04G 000645 3262 407 88.2 blastp
1756 LYM248 H2 switchgrass gb 167 DN 149511 3263 407 81.1 blastp
1757 LYM248 H3 wheat|gbl64|BE41803 3 3264 407 84.89 tblastn
1758 LYM250 HO rice |gbl70|OS09G387 00 3265 409 100 tblastn
1758 LYM250 HO rice |gbl70|OS09G387 00 3265 463 97.78 tblastn
1759 LYM251 Hl antirrhinum|gb 16 61AJ5 60114 3266 410 82 blastp
1760 LYM251 H76 apple gbl 71 CN49264 3 3267 410 80.1 blastp
1761 LYM251 H77 arabidopsis lyrata|09vl|JGIAL012 198 3268 410 81.4 blastp
1762 LYM251 H3 arabidopsis gb 165 AT 2G17380 3269 410 80.7 blastp
1763 LYM251 H4 arabidopsis gb 165 AT 4G35410 3270 410 80.12 tblastn
1764 LYM251 H5 b olerace a gb 161 AM 3 8 5265 3271 410 81.4 blastp
1765 LYM251 H6 brapa|gbl62|L33527 3272 410 81.4 blastp
1766 LYM251 H7 banana|gbl67|FF5583 00 3273 410 81.37 tblastn
112
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1767 LYM251 H78 barley gbl 57SOLEXA IBE421807 3274 410 81.4 blastp
1768 LYM251 H9 basilicum gb 157.3 DY 343154 3275 410 80.12 tblastn
1769 LYM251 Hll beangbl67 CV536707 3276 410 80.1 blastp
1770 LYM251 H79 brachypodium 09vl D V469153 3277 410 82.6 blastp
1771 LYM251 H13 canola|gbl61|CN7260 86 3278 410 81.4 blastp
1772 LYM251 H80 cassava 09vl CK6504 27 3279 410 80.12 tblastn
1773 LYM251 H81 cassava 09vl DV4488 85 3280 410 81.4 blastp
1774 LYM251 H82 castorbean 09vl XMO 02514342 3281 410 81.4 blastp
1775 LYM251 H16 c atharanthus | gb 1661E G554670 3282 410 81.4 blastp
1776 LYM251 H17 centaurea|gbl66|EH73 7707 3283 410 81.4 blastp
1777 LYM251 H18 centaurea|gbl66|EH78 2010 3284 410 81.4 blastp
1778 LYM251 H83 che stnut gb 17 0 S RRO 0 6295S0001854 3285 410 80.1 blastp
1779 LYM251 H84 chickpea|09v2| DY 475 463 3286 410 80.12 tblastn
1780 LYM251 H85 cichorium|gbl71 |EH6 77909 3287 410 81.4 blastp
1781 LYM251 H86 cichorium|gbl71 |EH6 81849 3288 410 80.7 blastp
1782 LYM251 H21 citrus|gbl66|CF41901 5 3289 410 82 blastp
1783 LYM251 H22 clover|gbl62|BB93513 6 3290 410 81.4 blastp
1784 LYM251 H23 cowpea gbl66 FF3837 63 3291 410 80.1 blastp
1785 LYM251 H87 cucumber 09vl CKO 85 508 3292 410 80.1 blastp
1786 LYM251 H24 dandelion gb 161 DY 8 22878 3293 410 80.1 blastp
1787 LYM251 H25 eucalyptus gbl 66 CT9 81708 3294 410 80.7 blastp
1788 LYM251 H88 femgbl71 DK949355 3295 410 80.1 blastp
1789 LYM251 H26 fescue gbl61DT7028 20 3296 410 82.6 blastp
1790 LYM251 H89 gerbera|09vl|AJ75631 9 3297 410 80.7 blastp
1791 LYM251 H27 grape|gbl60|CB00819 1 3298 410 82 blastp
1792 LYM251 H28 grape|gbl60|CD79981 9 3299 410 82 blastp
1793 LYM251 H29 ipomoea gbl 57.2 CJ75 1066 3300 410 81.4 blastp
113
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1794 LYM251 H90 jatropha|09vl |GO2471 40 3301 410 80.7 blastp
1795 LYM251 H30 lettuce gbl57.2 DW04 5452 3302 410 81.4 blastp
1796 LYM251 H31 liriodendron|gbl66|CK 762515 3303 410 83.2 blastp
1797 LYM251 H91 maize|gbl70|AA97985 6 3304 410 83.23 tblastn
1798 LYM251 H92 maize|gbl70|AI61934 2 3305 410 83.2 blastp
1799 LYM251 H93 maize|gbl70|AW1344 57 3306 410 91.3 tblastn
1800 LYM251 H94 medicago 09vl MSU9 3094 3307 410 82 blastp
1801 LYM251 H36 melon|gbl65|DV6335 83 3308 410 80.1 blastp
1802 LYM251 H95 millet 09vlEVO454P M010186 3309 410 83.2 blastp
1803 LYM251 H96 millet 09vlEVO454P M104784 3310 410 91.93 tblastn
1804 LYM251 H97 monkeyflower|09vl |G R007448 3311 410 82.6 blastp
1805 LYM251 H37 nuphar|gbl66|DT5885 73 3312 410 82 blastp
1806 LYM251 H98 oak|gbl70|DN949793 3313 410 80.1 blastp
1807 LYM251 H38 papaya|gbl65|EX2615 60 3314 410 81.4 blastp
1808 LYM251 H99 peanut|gbl 71 |EH0468 45 3315 410 82 blastp
1809 LYM251 H100 pepper gbl 71BM0682 91 3316 410 83.2 blastp
1810 LYM251 H101 petunia gbl71 FN0050 56 3317 410 82.6 blastp
1811 LYM251 H42 pine|gbl57.2|AA5568 57 3318 410 81.4 blastp
1812 LYM251 H43 pine|gbl57.2|AW2898 37 3319 410 81.4 blastp
1813 LYM251 H102 poplar|gbl70|AI16513 0 3320 410 80.1 blastp
1814 LYM251 H45 poppy gbl66 FG61376 3 3321 410 80.1 blastp
1815 LYM251 H46 potato|gbl57.2|BF054 079 3322 410 82.6 blastp
1816 LYM251 H47 pseudoroegneria gb 16 7|FF342572 3323 410 80.7 blastp
1817 LYM251 H48 radish|gbl64|EV52520 6 3324 410 80.7 blastp
1818 LYM251 H49 radish|gbl64|EV52859 3 3325 410 80.7 blastp
1819 LYM251 H50 radish|gbl64|EV53499 6 3326 410 81.4 blastp
1820 LYM251 H51 radish|gbl64|EV56567 7 3327 410 81.4 blastp
114
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1821 LYM251 H103 rice gbl70 OS03G570 40 3328 410 82.6 blastp
1822 LYM251 H53 rye|gbl64|BE637009 3329 410 80.7 blastp
1823 LYM251 H54 safflower|gbl62|EL40 2398 3330 410 81.4 blastp
1824 LYM251 H104 solanum phureja|09vl|SPHBGl 26373 3331 410 82.6 blastp
1825 LYM251 H105 sorghum 09v 1 SBO1G 003840 3332 410 91.3 tblastn
1826 LYM251 H106 sorghum 09v 1 SBO 1G 006180 3333 410 83.2 blastp
1827 LYM251 H57 soybean gbl 68 AW68 5285 3334 410 81.4 blastp
1828 LYM251 H58 soybean gbl68 BQ154 723 3335 410 80.1 blastp
1829 LYM251 H59 spruce gbl 62 Z93 754 3336 410 80.7 blastp
1830 LYM251 H107 sugarcane gbl57.3 BQ 533200 3337 410 83.2 blastp
1831 LYM251 H108 sugarcane gbl57.3BU 103624 3338 410 83.2 blastp
1832 LYM251 H62 sunflower gb 162 CD8 54801 3339 410 81.4 blastp
1833 LYM251 H63 sunflower gbl 62 DY9 17387 3340 410 81.4 blastp
1834 LYM251 H64 sunflower gb 162 EL4 8 5634 3341 410 81.4 blastp
1835 LYM251 H65 switchgrass gb 167 DN 152225 3342 410 83.2 blastp
1836 LYM251 H66 switchgrass gb 167 DN 152580 3343 410 82 blastp
1837 LYM251 H67 switchgrass gbl 67 FL8 27716 3344 410 92.5 blastp
1838 LYM251 H68 thellungiella gb 167 D N776639 3345 410 80.7 blastp
1839 LYM251 H69 tobacco gbl62CV020 782 3346 410 82 blastp
1840 LYM251 H109 tomato|09vl|BG12637 3 3347 410 83.2 blastp
1841 LYM251 H71 triphysaria|gbl 64|EY 0 17996 3348 410 80.7 blastp
1842 LYM251 H72 walnuts gbl 66 EL8929 83 3349 410 80.1 blastp
1843 LYM251 H73 walnuts gb 16 6 EL9034 96 3350 410 80.1 blastp
1844 LYM251 H74 wheat|gbl64|BE44435 6 3351 410 81.4 blastp
1845 LYM251 H75 wheat|gbl64|BE49857 9 3352 410 81.4 blastp
1846 LYM251 H76 wheat|gbl64|BQ90530 8 3353 410 81.4 blastp
115
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1847 LYM255 H3 brachypodium 09vl D V486276 3354 413 83.9 blastp
1848 LYM255 H4 maize|gbl70|AA07244 6 3355 413 80.8 blastp
1849 LYM255 H5 sorghum 09vl SB04G 034000 3356 413 82 blastp
1850 LYM255 H3 switchgrass gbl 67 FE6 06184 3357 413 83.8 blastp
1851 LYM260 HO rice gbl70 QS09G388 00 3358 414 80.5 blastp
1852 LYM263 HO maize|gbl70|AI67385 9 3359 416 87.47 tblastn
1853 LYM183 H8 brachypodium 09vl D V474476 3360 417 90.5 blastp
1853 LYM183 H8 brachypodium 09vl D V474476 3360 464 90.5 blastp
1854 LYM183 Hl cenchrus|gbl66|EB655 853 3361 417 83.5 blastp
1854 LYM183 Hl cenchrus|gbl66|EB655 853 3361 464 83.5 blastp
1855 LYM183 H2 leymusgbl66EG3757 19 3362 417 94.2 blastp
1855 LYM183 H2 leymusgbl66EG3757 19 3362 464 94.2 blastp
1856 LYM183 H9 maize | gb 17 01AI96467 3 3363 417 85.2 blastp
1856 LYM183 H9 maize | gb 17 01AI96467 3 3363 464 85.2 blastp
1857 LYM183 H10 rice gbl 70QS03G607 80 3364 417 84.8 blastp
1857 LYM183 H10 rice gbl 70QS03G607 80 3364 464 84.8 blastp
1858 LYM183 Hll sorghum 09v 1SBO 1G 003070 3365 417 84.4 blastp
1858 LYM183 Hll sorghum 09v 1 SBO 1G 003070 3365 464 84.4 blastp
1859 LYM183 H12 sugarcane gbl57.3 CA 111823 3366 417 83.6 blastp
1859 LYM183 H12 sugarcane gbl57.3 CA 111823 3366 464 83.6 blastp
1860 LYM183 H6 switchgrass gb 167 DN 151763 3367 417 83.4 blastp
1860 LYM183 H6 switchgrass gb 167 DN 151763 3367 464 83.4 blastp
1861 LYM183 H7 wheat|gbl64|BE51561 6 3368 417 93.9 tblastn
1861 LYM183 H7 wheat|gbl64|BE51561 6 3368 464 93.63 tblastn
1862 LYM183 H8 wheat|gbl64|BQ16080 3 3369 417 94.7 blastp
1862 LYM183 H8 wheat|gbl64|BQ16080 3 3369 464 94.7 blastp
1863 LYM256 H2 rice gbl 70QS05G451 10 3370 418 87.3 blastp
116
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1864 LYM256 H3 rice gbl70 OS10G079 70 3371 418 81.09 tblastn
1865 LYM200 HO sorghum 09vl SB04G 005600 3372 419 86.5 blastp
1866 LYM267 Hl sorghum 09v 1 SBO1G 044240 3373 420 88.3 blastp
1867 LYM268 Hl sugarcane gbl57.3 CA 079076 3374 421 81.6 blastp
1868 LYM270 HO sorghum|09vl|SB02G 040045 3375 422 82.3 blastp
1869 LYM271 H7 barley gbl 57SOLEXA IBG344953 3376 423 89.9 blastp
1870 LYM271 H8 brachypodium 09vl G T838823 3377 423 89.9 blastp
1871 LYM271 H9 rice gbl70 OS07G434 60 3378 423 91.1 blastp
1872 LYM271 H10 sorghum|09vl|SB02G 040020 3379 423 96.5 blastp
1873 LYM271 Hll sugarcane gbl57.3 CA 118167 3380 423 89.53 tblastn
1874 LYM271 H6 switchgrass gbl 67 FL6 91032 3381 423 94.2 blastp
1875 LYM271 H7 wheat|gbl64|CJ66420 9 3382 423 91.5 blastp
1876 LYM273 H4 brachypodium 09vl D V469687 3383 425 83.3 blastp
1877 LYM273 H5 maize|gbl70|AW3559 78 3384 425 85.2 blastp
1878 LYM273 H6 sorghum 09vl SB03G 044410 3385 425 84 blastp
1879 LYM273 H4 wheat|gbl64|BE51837 7 3386 425 85 blastp
1880 LYM274 HO rice gbl70 OS01G702 40 3387 426 100 blastp
1880 LYM274 HO rice gbl70 OS01G702 40 3387 466 89.2 blastp
1881 LYM278 H9 maize | gb 17 01LLDQ24 4681 3388 428 95.2 blastp
1882 LYM278 H2 rye|gbl64|Z23257 3389 428 92.86 tblastn
1883 LYM278 H3 wheat|gbl64|AL82126 4 3390 428 95.3 blastp
1884 LYM278 H4 wheat|gbl64|BE51672 3 3391 428 94 blastp
1885 LYM278 H5 wheat|gbl64|BF20040 2 3392 428 86.9 tblastn
1886 LYM278 H6 wheat|gbl64|BF47442 3 3393 428 92.86 tblastn
1887 LYM278 H7 wheat gbl 64 BG90946 2 3394 428 89.3 blastp
1888 LYM278 H8 wheatgbl64 BQ57909 7 3395 428 95.24 tblastn
1889 LYM278 H9 wheat|gbl64|CA65034 9 3396 428 83.3 blastp
117
2018271407 30 Nov 2018
Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1890 LYM284 H16 barley gbl 57SOLEXA IBE438857 3397 430 86.4 blastp
1891 LYM284 H17 brachypodium 09vl D V474685 3398 430 84.3 blastp
1892 LYM284 H18 brachypodium 09vl D V488161 3399 430 88.2 blastp
1893 LYM284 H3 fescue gbl61DT6744 46 3400 430 86.91 tblastn
1894 LYM284 H19 maize|gbl70|AI63725 6 3401 430 88.5 blastp
1895 LYM284 H20 maize|gbl70|AI86113 1 3402 430 84.3 blastp
1896 LYM284 H21 maize|gbl70|BM5012 76 3403 430 83.8 blastp
1897 LYM284 H22 rice gbl70 OS01G430 20 3404 430 81.4 blastp
1898 LYM284 H23 rice gbl70 OS01G465 70 3405 430 84.6 blastp
1899 LYM284 H24 sorghum|09vl|SB03G 027960 3406 430 80.6 blastp
1900 LYM284 H25 sorghum|09vl|SB03G 029790 3407 430 85.1 blastp
1901 LYM284 H26 sorghum 09v 1 SB09G 029130 3408 430 87.2 blastp
1902 LYM284 H27 sugarcane gbl57.3 BQ 533889 3409 430 84.5 blastp
1903 LYM284 H12 switchgrass gb 167 DN 151636 3410 430 81 blastp
1904 LYM284 H13 switchgrass gbl 67 FE6 34580 3411 430 85.4 blastp
1905 LYM284 H14 switchgrass gbl 67 FL7 12120 3412 430 89.53 tblastn
1906 LYM284 H15 wheat|gbl64|BE40078 9 3413 430 88.1 blastp
1907 LYM284 H16 wheat|gbl64|BF20080 4 3414 430 80.4 blastp
1908 LYM285 H3 brachypodium 09vl D V476342 3415 431 89.2 blastp
1909 LYM285 H4 maize|gbl70|AI37229 8 3416 431 88.1 blastp
1910 LYM285 H5 rice gbl70 OS01G699 00 3417 431 99.82 tblastn
1911 LYM285 H6 sorghum|09vl|SB03G 044210 3418 431 89.3 blastp
1912 LYM285 H3 switchgrass gb 167 DN 142770 3419 431 89.75 tblastn
1913 LYM288 H6 brachypodium 09vl D V471350 3420 433 83.3 blastp
1914 LYM288 Hl leymus gbl 66 EG3779 96 3421 433 84.7 blastp
1915 LYM288 H7 maize gbl70AI97792 4 3422 433 84.5 blastp
1916 LYM288 H8 sorghum|09vl|SB02G 039240 3423 433 83.9 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1917 LYM288 H9 sugarcane gbl57.3 CA 067537 3424 433 85.8 blastp
1918 LYM288 H5 switchgrass gb 167 DN 151710 3425 433 85.3 blastp
1919 LYM288 H6 switchgrass gbl 67 FE6 10990 3426 433 85.3 blastp
1920 LYM289 H39 barley gbl 57SOLEXA IAL500321 3427 434 91.1 blastp
1921 LYM289 H40 barley gbl 57SOLEXA AV915627 3428 434 92.7 blastp
1922 LYM289 H41 barley gbl 57SOLEXA IBF624195 3429 434 98.2 blastp
1923 LYM289 H42 barley gbl 57SOLEXA |BF627133 3430 434 92.7 blastp
1924 LYM289 H43 barley gbl 57SOLEXA |BQ739963 3431 434 92.7 blastp
1925 LYM289 H44 brachypodium 09vl G FXEF059989X41 3432 434 81.8 blastp
1926 LYM289 H7 cacao|gbl67|CU56893 3 3433 434 85.5 blastp
1927 LYM289 H8 fescue gbl 61 |CK8015 01 3434 434 90.9 blastp
1928 LYM289 H9 fescue gbl61DT6836 63 3435 434 90.9 blastp
1929 LYM289 H10 leymus gb 166 EG3 762 87 3436 434 96.4 blastp
1930 LYM289 H45 lolium|09vl|AU24668 3 3437 434 89.1 blastp
1931 LYM289 Hll lovegrass gbl67DN48 0351 3438 434 87.3 blastp
1932 LYM289 H46 maize|gbl70|AI63724 2 3439 434 81.8 blastp
1933 LYM289 H47 maize|gbl70|LLEC86 5320 3440 434 81.8 blastp
1934 LYM289 H48 maize|gbl70|T12715 3441 434 87.3 blastp
1935 LYM289 H49 millet 09vl CD724594 3442 434 80 blastp
1936 LYM289 H50 millet|09vl|EB410971 3443 434 87.3 blastp
1937 LYM289 H15 oat|gbl64|CN818354 3444 434 90.9 blastp
1938 LYM289 H16 pine apple gb 15 7.2 DT 337702 3445 434 80 blastp
1939 LYM289 H51 rice gbl70 OS06G051 20 3446 434 83.6 blastp
1940 LYM289 H52 sorghum 09v 1 SB09G 005410 3447 434 80 blastp
1941 LYM289 H53 sorghum 09v 1 SB 10G 002980 3448 434 87.3 blastp
1942 LYM289 H54 sugarcane gbl57.3 CA 117495 3449 434 87.3 blastp
1943 LYM289 H55 sugarcane gbl57.3 CA 149658 3450 434 81.8 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1944 LYM289 H56 sugarcane gbl57.3CF 575668 3451 434 87.3 blastp
1945 LYM289 H23 switchgrass gb 167 DN 144776 3452 434 80 blastp
1946 LYM289 H24 switchgrass gb 167 DN 144989 3453 434 89.1 blastp
1947 LYM289 H25 switchgrass gbl 67 FE6 07508 3454 434 89.1 blastp
1948 LYM289 H26 switchgrass gbl 67 FL7 36037 3455 434 81.8 blastp
1949 LYM289 H27 wheat|gbl64|AL81111 9 3456 434 98.2 blastp
1950 LYM289 H28 wheat|gbl64|BE44378 6 3457 434 96.4 blastp
1951 LYM289 H29 wheat gbl 64 BG90709 8 3458 434 98.2 blastp
1952 LYM289 H30 wheat|gb 164|BM 13 65 71 3459 434 96.4 blastp
1953 LYM289 H31 wheat|gbl64|BQ80426 1 3460 434 96.4 blastp
1954 LYM289 H32 wheat|gb 164|CA6165 8 6 3461 434 81.8 blastp
1955 LYM289 H33 wheat|gbl64|CA64017 8 3462 434 98.2 blastp
1956 LYM289 H34 wheat|gbl64|CA64378 4 3463 434 98.2 blastp
1957 LYM289 H35 wheatgbl64 CA73397 2 3464 434 80.36 tblastn
1958 LYM289 H36 wheatgbl64 CD89687 3 3465 434 82.1 blastp
1959 LYM289 H37 wheat|gbl64|CJ58670 9 3466 434 89.1 blastp
1960 LYM289 H38 wheat gbl 64 CJ64697 0 3467 434 80 blastp
1961 LYM289 H39 wheatgbl64 CJ90337 8 3468 434 96.4 blastp
1962 LYM290 H10 barley gbl 57SOLEXA |BE412989 3469 435 82.9 blastp
1963 LYM290 Hll brachypodium 09vl G T759831 3470 435 81.9 blastp
1964 LYM290 H12 rice gbl 70QS04G202 30 3471 435 82.9 blastp
1965 LYM290 H3 rye|gbl64|BE495099 3472 435 81.9 blastp
1966 LYM290 H13 sorghum 09v 1 SBO 1G 009390 3473 435 95.2 blastp
1967 LYM290 H14 sorghum 09v 1 SB06G 004500 3474 435 94.8 blastp
1968 LYM290 H15 sugarcane gbl57.3 BQ 535968 3475 435 95.7 blastp
1969 LYM290 H16 sugarcane gbl57.3 CA 136629 3476 435 80.3 blastp
1970 LYM290 H8 switchgrass gbl 67 FE6 22978 3477 435 91.4 blastp
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Nucl. SEQ ID NO: Gene Name cluster name Polyp. SEQ ID NO: Homolog, to SEQ ID NO: % global identity Algor.
1971 LYM290 H9 wheat|gbl64|BE43009 0 3478 435 83.3 blastp
1972 LYM290 H10 wheat|gbl64|BF19952 4 3479 435 82.4 blastp
1973 LYM293 HO rice |gbl70|OS09G385 10 3480 437 91.8 blastp
Table 2: Provided are the homologous polypeptides and polynucleotides of the genes for increasing yield (e.g., oil yield, seed yield, fiber yield and/or quality), growth rate, vigor, biomass, abiotic stress tolerance, nitrogen use efficiency, water use efficiency and fertilizer use efficiency genes of a plant which are listed in Table 1 above. Homology was calculated as % of identity over the aligned sequences. The query sequences were polynucleotide sequences SEQ ID NOs: 1-239 and polypeptide SEQ ID NOs:240-465 and the subject sequences are protein sequences identified in the database based on greater than 80 % identity to the predicted translated sequences of the query nucleotide sequences or to the polypeptide sequences. Nucl. = polynucleotide; polyp. = polypeptide; Algor. = algorithm (used for sequence alignment and determination of percent homology).
The following sequences were found to be 100 % identical: SEQ ID NO: 4 is identical to SEQ ID NO: 478; SEQ ID NO: 24 is identical to SEQ ID NO: 914; SEQ ID NO: 79 is identical to SEQ ID NO: 1050; SEQ ID NO: 132 is identical to SEQ ID NO: 3608; SEQ ID NO: 163 is identical to SEQ ID NO: 1734; SEQ ID NO: 249 is identical to SEQ ID NO: 2100, 2101, 2103, and 2108; SEQ ID NO: 321 is identical to SEQ ID NO: 2771; SEQ ID NO: 382 is identical to SEQ ID NO: 3019; SEQ ID NO: 387 is identical to SEQ ID NO: 2945; SEQ ID NO426 is identical to SEQ ID NO: 3387; SEQ ID NO: 446 is identical to SEQ ID NO: 2946; SEQ ID NO: 449 is identical to SEQ ID NO: 3705; SEQ ID NO: 2005 is identical to SEQ ID NO: 2011 and 2012; SEQ ID NO: 2007 is identical to SEQ ID NO: 2043 and 2045; SEQ ID NO: 2038 is identical to SEQ ID NO: 2039; SEQ ID NO: 2071 is identical to SEQ ID NO: 2072; SEQ ID NO: 2075 is identical to SEQ ID NO:2076, 2078, 2079, 2083, 2084, 2086, 2089, 2090, 2092, 2093, 2095, 2120, 2122, 2235, 2236, 2238, 2239, 2277, and 2278; SEQ ID NO: 2080 is identical to SEQ ID NO: 2155, 2176, 2179, 2248, and 2268; SEQ ID NO: 2102 is identical to SEQ ID NO: 2193; SEQ ID NO: 2105 is identical to SEQ ID NO: 2147, 2181, 2196, 2197, 2210, 2211, 2213, 2254, and 2256; SEQ ID NO: 2125 is identical to SEQ ID NO: 2126 and 2127; SEQ ID NO: 2130 is identical to SEQ ID NO: 2131, 2214, 2228, 2231, and 2251; SEQ ID NO: 2134 is identical to SEQ ID NO: 2247; SEQ ID NO: 2144 is identical to SEQ ID NO: 2153 and 2201; SEQ ID NO: 2188 is identical to
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SEQ ID NO: 2191, 2253, 2264, and 2271; SEQ ID NO: 2189 is identical to SEQ ID NO: 2202, 2252, 2265, 2266, 2270, and 2272; SEQ ID NO: 2215 is identical to SEQ ID NO: 2250 and 2284; SEQ ID NO: 2218 is identical to SEQ ID NO: 2219; SEQ ID NO: 2220 is identical to SEQ ID NO: 2221 and 2258; SEQ ID NO: 2356 is identical to SEQ ID NO: 2357 and 2359; SEQ ID NO: 2380 is identical to SEQ ID NO: 2402; SEQ ID NO: 2384 is identical to SEQ ID NO: 2387; SEQ ID NO: 2463 is identical to SEQ ID NO:2464; SEQ ID NO: 2481 is identical to SEQ ID NO: 2483; SEQ ID NO: 2485 is identical to SEQ ID NO: 2486; SEQ ID NO: 2533 is identical to SEQ ID NO: 2538; SEQ ID NO: 2582 is identical to SEQ ID NO: 2583; SEQ ID NO: 2588 is identical to SEQ ID NO: 2594, 2603, 2621, and 2629; SEQ ID NO: 2589 is identical to SEQ ID NO:2590, 2591, 2592, 2595, 2596, 2601, 2604, 2605, 2623, 2624, 2626, 2627, 2630, 2756, 2757, 2758, 2760, 2761, 2762, 2764, 2765, and 2807; SEQ ID NO:2593 is identical to SEQ ID NO:2632, and 2767; SEQ ID NO: 2600 is identical to SEQ ID NO: 2622; SEQ ID NO: 2606 is identical to SEQ ID NO: 2610; SEQ ID NO: 2607 is identical to SEQ ID NO: 2609; SEQ ID NO: 2625 is identical to SEQ ID NO: 2713; SEQ ID NO: 2638 is identical to SEQ ID NO: 2639; SEQ ID NO: 2644 is identical to SEQ ID NO: 2727; SEQ ID NO: 2645 is identical to SEQ ID NO: 2726; SEQ ID NO: 2665 is identical to SEQ ID NO: 2719; SEQ ID NO: 2687 is identical to SEQ ID NO: 2689; SEQ ID NO: 2691 is identical to SEQ ID NO: 2693 and 2698; SEQ ID NO: 2694 is identical to SEQ ID NO: 2697; SEQ ID NO: 2712 is identical to SEQ ID NO: 2816, 2817 and 2818; SEQ ID NO: 2748 is identical to SEQ ID NO: 2749, 2778 and 2815; SEQ ID NO: 2750 is identical to SEQ ID NO: 2751 and 2776; SEQ ID NO: 2779 is identical to SEQ ID NO: 2790 and 2794; SEQ ID NO: 2801 is identical to SEQ ID NO: 2804; SEQ ID NO: 2873 is identical to SEQ ID NO: 2880; SEQ ID NO: 2876 is identical to SEQ ID NO: 2881; SEQ ID NO: 2877 is identical to SEQ ID NO: 2879; SEQ ID NO: 2908 is identical to SEQ ID NO: 2909; SEQ ID NO: 3135 is identical to SEQ ID NO: 3136; SEQ ID NO: 3138 is identical to SEQ ID NO: 3145; SEQ ID NO: 3268 is identical to SEQ ID NO: 3271, 3272, 3278, 3326, and 3327; SEQ ID NO: 3274 is identical to SEQ ID NO: 3351, 3352, and 3353; SEQ ID NO: 3277 is identical to SEQ ID NO: 3296; SEQ ID NO: 3285 is identical to SEQ ID NO: 3313; SEQ ID NO: 3287 is identical to SEQ ID NO: 3302; SEQ ID NO: 3309 is identical to SEQ ID NO: 3333, 3337, 3338, and 3342; SEQ ID NO: 3318 is identical to SEQ ID NO: 3319; SEQ
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ID NO: 3322 is identical to SEQ ID NO: 3331; SEQ ID NO: 3428 is identical to SEQ ID NO: 3430 3431; SEQ ID NO: 3434 is identical to SEQ ID NO: 3435; SEQ ID NO: 3439 is identical to SEQ ID NO: 3440 and 3461; SEQ ID NO: 3448 is identical to SEQ ID NO: 3449 and 3451; SEQ ID NO: 3453 is identical to SEQ ID NO: 3454; SEQ ID NO: 3456 is identical to SEQ ID NO: 3458, 3462 and 3463; SEQ ID NO: 3457 is identical to SEQ ID NO: 3459 and 3468;
The output of the functional genomics approach described herein is a set of genes highly predicted to improve yield and/or other agronomic important traits such as growth rate, vigor, oil content, fiber yield and/or quality, biomass, growth rate, abiotic stress tolerance, nitrogen use efficiency, water use efficiency and fertilizer use efficiency of a plant by increasing their expression. Although each gene is predicted to have its own impact, modifying the mode of expression of more than one gene is expected to provide an additive or synergistic effect on the plant yield and/or other agronomic important yields performance. Altering the expression of each gene described here alone or set of genes together increases the overall yield and/or other agronomic important traits, hence expects to increase agricultural productivity.
EXAMPLE 3
PRODUCTION OF BARLEY TRANSCRIPTOM AND HIGH THROUGHPUT CORRELATION ANALYSIS USING 44K BARLEY OLIGONUCLEOTIDE MICROARRAY
In order to produce a high throughput correlation analysis, the present inventors utilized a Barley oligonucleotide micro-array, produced by Agilent Technologies [Hypertext Transfer Protocol ://World Wide Web (dot) chem. (dot) agilent (dot) com/Scripts/PDS (dot) asp?lPage=50879], The array oligonucleotide represents about 47,500 Barley genes and transcripts. In order to define correlations between the levels of RNA expression and yield or vigor related parameters, various plant characteristics of 25 different Barley accessions were analyzed. Among them, 13 accessions encompassing the observed variance were selected for RNA expression analysis. The correlation between the RNA levels and the characterized parameters was analyzed using Pearson correlation test [Hypertext Transfer Protocol ://World Wide Web (dot) davidmlane (dot) com/hyperstat/A34739 (dot) html].
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Experimental procedures
RNA extraction - Five tissues at different developmental stages [meristem, flower, booting spike, stem, flag leaf], representing different plant characteristics, were sampled and RNA was extracted using TRIzol Reagent from Invitrogen [Hypertext Transfer Protocol ://World Wide Web (dot) invitrogen (dot) com/content (dot)cfm?pageid=469]. Approximately 30-50 mg of tissue was taken from samples. The weighed tissues were ground using pestle and mortar in liquid nitrogen and resuspended in 500 μΐ of TRIzol Reagent. To the homogenized lysate, 100 μΐ of chloroform was added followed by precipitation using isopropanol and two washes with 75 % ethanol. The RNA was eluted in 30 μΐ of RNase-free water. RNA samples were cleaned up using Qiagen’s RNeasy minikit clean-up protocol as per the manufacturer’s protocol (QIAGEN Inc, CA USA).
For convenience, each micro-array expression information tissue type has received a Set ID as summarized in Table 3 below.
Table 3
Barley transcriptom expression sets
Expression Set Set ID
Meristem A
Flower B
Booting spike C
Stem D
Flag leaf E
Table 3
Barley yield components and vigor related parameters assessment - 25 Barley accessions in 4 repetitive blocks (named A, B, C, and D), each containing 4 plants per plot were grown at net house. Plants were phenotyped on a daily basis following the standard descriptor of barley (Table 4, below). Harvest was conducted while 50 % of the spikes were dry to avoid spontaneous release of the seeds. Plants were separated to the vegetative part and spikes, of them, 5 spikes were threshed (grains were separated from the glumes) for additional grain analysis such as size measurement, grain count per spike and grain yield per spike. All material was oven dried and the seeds were threshed manually from the spikes prior to measurement of the seed characteristics (weight and size) using scanning and image analysis. The image analysis system
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Table 4
Barley standard descriptors
Trait Parameter Range Description
Growth habit Scoring 1-9 Prostrate (1) or Erect (9)
Hairiness of basal leaves Scoring P (Presence)ZA (Absence) Absence (1) or Presence (2)
Stem pigmentation Scoring 1-5 Green (1), Basal only or Half or more (5)
Days to Flowering Days Days from sowing to emergence of awns
Plant height Centimeter (cm) Height from ground level to top of the longest spike excluding awns
Spikes per plant Number Terminal Counting
Spike length Centimeter (cm) Terminal Counting 5 spikes per plant
Grains per spike Number Terminal Counting 5 spikes per plant
Vegetative dry weight Gram Oven-dried for 48 hours at 70°C
Spikes dry weight Gram Oven-dried for 48 hours at 30°C
Table 4.
Grains per spike - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The total number of grains from 5 spikes that were manually threshed was counted. The average grain per spike is calculated by dividing the total grain number by the number of spikes.
Grain average size (cm) - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The total grains from 5 spikes that were manually threshed were scanned and images were analyzed using the digital imaging system. Grain scanning was done using Brother scanner (model DCP135), at the 200 dpi resolution and analyzed with Image J software. The average grain size was calculated by dividing the total grain size by the total grain number.
Grain average weight (mgr) - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The total grains from 5 spikes that were manually threshed were counted and weight. The average weight was calculated by dividing the total weight by the total grain number.
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Grain yield per spike (gr) - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The total grains from 5 spikes that were manually threshed were weight. The grain yield was calculated by dividing the total weight by the spike number.
Spike length analysis - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The five chosen spikes per plant were measured using measuring tape excluding the awns.
Spike number analysis - At the end of the experiment (50 % of the spikes were dry) all spikes from plots within blocks A-D are collected. The spikes per plant were counted.
Growth habit scoring - At the growth stage 10 (booting), each of the plants was scored for its growth habit nature. The scale that was used was 1 for prostate nature till 9 for erect.
Hairiness of basal leaves - At the growth stage 5 (leaf sheath strongly erect; end of tillering), each of the plants was scored for its hairiness nature of the leaf before the last. The scale that was used was 1 for prostate nature till 9 for erect.
Plant height - At the harvest stage (50 % of spikes were dry) each of the plants was measured for its height using measuring tape. Height was measured from ground level to top of the longest spike excluding awns.
Days to flowering - Each of the plants was monitored for flowering date. Days of flowering was calculated from sowing date till flowering date.
Stem pigmentation - At the growth stage 10 (booting), each of the plants was scored for its stem color. The scale that was used was 1 for green till 5 for full purple.
Vegetative dry weight and spike yield - At the end of the experiment (50 % of the spikes were dry) all spikes and vegetative material from plots within blocks A-D are collected. The biomass and spikes weight of each plot was separated, measured and divided by the number of plants.
Dry weight = total weight of the vegetative portion above ground (excluding roots) after drying at 70 °C in oven for 48 hours;
Spike yield per plant = total spike weight per plant (gr) after drying at 30 °C in oven for 48 hours.
Harvest Index (for barley) - The harvest index is calculated using Formula VI.
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Formula VI: Harvest Index = Average spike dry weight per plant/ (Average vegetative dry weight per plant + Average spike dry weight per plant)
Table 5
Barley correlated parameters (vectors)
Correlated parameter with (units) Correlation Id
Grains per spike (numbers) 1
Grains size (mm2) 2
Grain weight (miligrams) 3
Grain Yield per spike (gr/spike) 4
Spike length (cm) 5
Spikes per plant (numbers) 6
Growth habit (scores 1-9) 7
Hairiness of basal leaves (scoring 1-2) 8
Plant height (cm) 9
Days to flowering (days) 10
Stem pigmentation (scoring 1-5) 11
Vegetative dry weight (gram) 12
Harvest Index (ratio) 13
Table 5.
Experimental Results
13 different Barley accessions were grown and characterized for 13 parameters as described above. The average for each of the measured parameter was calculated using the JMP software and values are summarized in Tables 6 and 7 below. Subsequent correlation analysis between the various transcriptom sets (Table 3) and the average parameters, was conducted. Follow, results were integrated to the database.
Table 6
Measured parameters of correlation Ids in Barley accessions
Accession /Parameter 6 10 3 5 2 1 7
Amatzya 48.85 62.40 35.05 12.04 0.27 20.23 2.60
Ashqelon 48.27 64.08 28.06 10.93 0.23 17.98 2.00
Canada park 37.42 65.15 28.76 11.83 0.24 17.27 1.92
Havarim stream 61.92 58.92 17.87 9.90 0.17 17.73 3.17
Jordan est 33.27 63.00 41.22 11.68 0.29 14.47 4.33
Klil 41.69 70.54 29.73 11.53 0.28 16.78 2.69
Maale Efraim ND 52.80 25.22 8.86 0.22 13.47 3.60
Mt Arbel 40.63 60.88 34.99 11.22 0.28 14.07 3.50
Mt Harif 62.00 58.10 20.58 11.11 0.19 21.54 3.00
Neomi 49.33 53.00 27.50 8.58 0.22 12.10 3.67
Neot Kdumim 50.60 60.40 37.13 10.18 0.27 14.36 2.47
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Accession /Parameter 6 10 3 5 2 1 7
Oren canyon 43.09 64.58 29.56 10.51 0.27 15.28 3.50
Yeruham 51.40 56.00 19.58 9.80 0.18 17.07 3.00
Table 6. Provided are the values of each of the parameters measured in Barley accessions according to the following correlation identifications (Correlation Ids): 6 = Spikes per plant; 10 = Days to flowering; 3 = Grain weight; 5 = Spike length; 2 = Grains Size; 1 = Grains per spike; 7 = Growth habit.
Table 7
Barley accessions, additional measured parameters
Accession /Parameter 8 9 4 11 12 13
Amatzya 1.53 134.27 3.56 1.13 78.87 0.45
Ashqelon 1.33 130.50 2.54 2.50 66.14 0.42
Canada park 1.69 138.77 2.58 1.69 68.49 0.40
Havarim stream 1.08 114.58 1.57 1.75 53.39 0.44
Jordan est 1.42 127.75 3.03 2.33 68.30 0.43
Klil 1.69 129.38 2.52 2.31 74.17 0.40
Maale Efraim 1.30 103.89 1.55 1.70 35.35 0.52
Mt Arbel 1.19 121.63 2.62 2.19 58.33 0.48
Mt Harif 1.00 126.80 2.30 2.30 62.23 0.44
Neomi 1.17 99.83 1.68 1.83 38.32 0.49
Neot Kdumim 1.60 121.40 2.68 3.07 68.31 0.45
Oren canyon 1.08 118.42 2.35 1.58 56.15 ND
Yeruham 1.17 117.17 1.67 2.17 42.68 ND
Table 7. Provided are the values of each of the parameters measured in Barley accessions according to the following correlation identifications (Correlation Ids): 8 = Hairiness of basal leaves; 9 = Plant height; 4 = Grain yield per spike; 11 = Stem pigmentation; 12 = Vegetative dry weight; 13 = Harvest Index.
Table 8
Correlation between the expression level of the selected polynucleotides of the invention and their homologues in specific tissues or developmental stages and the phenotypic performance across Barley ecotypes
Gene Name Expression Set Correlation Vector R P
LYM26 A 12 0.87938 0.00178
LYM26 A 4 0.86421 0.00265
LYM26 A 12 0.85977 0.00069
LYM26 A 4 0.84991 0.00092
LYM26 A 9 0.83315 0.00145
LYM26 A 9 0.81930 0.00689
LYM26 A 5 0.81231 0.00238
LYM26 A 5 0.80624 0.00867
LYM26 C 1 0.74897 0.00799
LYM26 C 1 0.73316 0.02461
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Gene Name Expression Set Correlation Vector R P
LYM26 A 10 0.72560 0.02691
LYM51 A 10 0.93629 0.00020
LYM51 A 12 0.92036 0.00043
LYM51 A 5 0.88679 0.00144
LYM51 A 9 0.87500 0.00201
LYM51 A 10 0.85681 0.00075
LYM51 A 4 0.82050 0.00674
LYM51 A 5 0.78204 0.00445
LYM51 A 9 0.77050 0.00552
LYM51 A 12 0.74603 0.00838
LYM51 A 4 0.71036 0.01430
LYM59 A 4 0.88939 0.00133
LYM59 A 3 0.80853 0.00834
LYM59 A 2 0.80307 0.00915
LYM59 A 12 0.79319 0.01075
LYM59 A 5 0.73433 0.02426
LYM59 A 10 0.72556 0.02693
LYM66 A 1 0.77697 0.01376
LYM66 A 1 0.75508 0.00722
LYM82 A 10 0.88760 0.00140
LYM82 A 12 0.86378 0.00061
LYM82 A 12 0.85529 0.00329
LYM82 A 10 0.84623 0.00102
LYM82 A 9 0.83000 0.00562
LYM82 A 9 0.82602 0.00173
LYM82 A 4 0.81534 0.00222
LYM82 A 4 0.79017 0.01127
LYM82 A 5 0.78467 0.00424
LYM82 A 5 0.76164 0.01709
LYM84 C 2 0.79418 0.01058
LYM84 B 2 0.79145 0.01928
LYM84 C 3 0.77694 0.01377
LYM84 B 3 0.75502 0.03033
LYM84 A 2 0.70823 0.01473
LYM99 C 7 0.75021 0.01989
LYM99 A 7 0.72294 0.02776
LYM95 B 2 0.81158 0.00436
LYM95 B 3 0.77615 0.00830
LYM95 B 10 0.73186 0.01612
LYM95 C 2 0.72471 0.02719
LYM95 B 5 0.71170 0.02097
LYM100 A 3 0.77258 0.01467
LYM100 A 4 0.76559 0.01619
LYM100 A 2 0.72628 0.02670
LYM105 A 4 0.80126 0.00943
LYM105 A 2 0.80060 0.00953
LYM105 A 3 0.78770 0.01171
LYM105 A 8 0.71795 0.02939
LYM105 B 1 0.71160 0.04775
LYM137 C 5 0.91789 0.00007
LYM137 C 4 0.87211 0.00046
LYM137 C 10 0.86290 0.00063
LYM137 C 12 0.85934 0.00070
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Gene Name Expression Set Correlation Vector R P
LYM137 C 9 0.82372 0.00183
LYM137 C 3 0.73788 0.02323
LYM137 c 2 0.71562 0.03017
LYM140 c 6 0.83623 0.00968
LYM142 B 6 0.85850 0.01338
LYM142 A 4 0.80126 0.00943
LYM142 A 2 0.80060 0.00953
LYM142 A 3 0.78770 0.01171
LYM142 A 8 0.73208 0.01042
LYM142 A 8 0.71795 0.02939
LYM142 B 1 0.71160 0.04775
LYM148 A 4 0.79887 0.00318
LYM148 A 12 0.76743 0.00583
LYM148 A 4 0.76342 0.01668
LYM148 A 9 0.74349 0.00873
LYM148 A 5 0.70612 0.01516
LYM149 B 7 0.75092 0.03177
LYM156 C 2 0.79406 0.00352
LYM156 C 2 0.77724 0.01371
LYM156 A 2 0.76712 0.00586
LYM156 A 3 0.73707 0.00965
LYM156 C 3 0.71152 0.01407
LYM156 B 3 0.70014 0.05315
LYM157 A 4 0.78681 0.01187
LYM157 A 3 0.73234 0.02485
LYM157 A 12 0.72729 0.02639
LYM160 A 12 0.87825 0.00184
LYM160 A 10 0.82699 0.00596
LYM160 A 12 0.82567 0.00174
LYM160 A 9 0.80855 0.00834
LYM160 A 9 0.80222 0.00297
LYM160 A 10 0.74770 0.00815
LYM160 A 5 0.72266 0.02785
LYM160 A 5 0.71752 0.01292
LYM154 C 2 0.92810 0.00004
LYM154 C 3 0.90313 0.00014
LYM154 c 4 0.85169 0.00088
LYM154 c 5 0.73538 0.00991
LYM154 c 10 0.71818 0.01280
LYM154 c 12 0.70985 0.01440
LYM155 c 6 0.72312 0.04266
LYM155 c 1 0.70598 0.01519
LYM180 c 1 0.76320 0.00628
LYM180 B 6 0.75133 0.05153
LYM181 C 6 0.78450 0.02115
LYM184 B 6 0.82395 0.02266
LYM184 B 6 0.73704 0.01501
LYM189 A 10 0.81585 0.00733
LYM189 A 12 0.81256 0.00777
LYM189 A 9 0.72388 0.02746
LYM189 A 5 0.71589 0.03008
LYM192 A 2 0.86386 0.00061
LYM192 A 3 0.80919 0.00255
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Gene Name Expression Set Correlation Vector R P
LYM192 A 3 0.77612 0.01393
LYM278 A 4 0.90217 0.00088
LYM278 A 4 0.87108 0.00048
LYM278 A 12 0.81518 0.00742
LYM278 A 3 0.79925 0.00975
LYM278 A 3 0.78102 0.00454
LYM278 A 12 0.76569 0.00601
LYM278 A 2 0.73983 0.00925
LYM38 A 4 0.97624 0.00001
LYM38 A 12 0.82191 0.00191
LYM38 A 8 0.82190 0.00656
LYM38 A 3 0.82153 0.00193
LYM38 A 5 0.81079 0.00246
LYM52 B 8 0.88462 0.00352
LYM52 A 2 0.80812 0.00261
LYM52 A 4 0.80802 0.00841
LYM52 A 3 0.78340 0.01251
LYM52 A 12 0.77364 0.01444
LYM52 A 9 0.75221 0.01938
LYM52 A 5 0.74914 0.02016
LYM52 A 8 0.71086 0.03181
LYM56 A 3 0.85797 0.00073
LYM56 A 4 0.85130 0.00089
LYM56 A 2 0.82071 0.00196
LYM56 A 8 0.76236 0.01692
LYM56 A 12 0.72510 0.01157
LYM83 A 9 0.87556 0.00198
LYM83 A 5 0.87005 0.00050
LYM83 A 12 0.82187 0.00191
LYM90 C 4 0.86848 0.00238
LYM90 C 3 0.81261 0.00777
LYM90 c 12 0.77921 0.01332
LYM90 c 2 0.76512 0.01629
LYM93 A 9 0.86630 0.00056
LYM93 A 12 0.78696 0.00405
LYM93 A 5 0.76542 0.00604
LYM106 A 3 0.79483 0.01047
LYM106 A 2 0.75674 0.01825
LYM106 C 6 0.73962 0.03596
LYM159 c 1 0.82807 0.00584
LYM159 B 8 0.79356 0.01873
LYM161 C 3 0.89287 0.00119
LYM161 C 2 0.88206 0.00165
LYM161 A 6 0.85373 0.00699
LYM161 C 4 0.74623 0.02093
LYM178 C 6 0.83756 0.00945
LYM182 A 6 0.93567 0.00063
LYM185 C 4 0.76455 0.01642
LYM185 A 1 0.75952 0.01759
LYM185 A 6 0.70292 0.01584
LYM186 A 6 0.86003 0.00616
LYM188 A 6 0.82774 0.00166
LYM188 C 2 0.73602 0.02377
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Gene Name Expression Set Correlation Vector R P
LYM188 C 3 0.71072 0.03186
LYM194 A 2 0.89053 0.00024
LYM194 A 3 0.82982 0.00157
LYM289 A 9 0.77609 0.01394
LYM289 A 5 0.77182 0.01483
Table 8. Provided are the correlations (R) and p-values (P) between the expression levels of selected genes of some embodiments of the invention in various tissues or developmental stages (Expression sets) and the phenotypic performance in various yield (seed yield, oil yield, oil content), biomass, growth rate and/or vigor components [Correlation (Corr.) vector (Vec.)] Corr. Vec. = correlation vector specified in Tables 5, 6 and 7; Exp. Set = expression set specified in Table 3.
EXAMPLE 4
PRODUCTION OF ARABIDOPSIS TRANSCRIPTOM AND HIGH THROUGHPUT CORRELATION ANALYSIS OF YIELD, BIOMASS AND/OR VIGOR RELATED PARAMETERS USING 44K ARABIDOPSIS FULL GENOME OLIGONUCLEOTIDE MICRO-ARRAY
To produce a high throughput correlation analysis, the present inventors utilized an Arabidopsis thaliana oligonucleotide micro-array, produced by Agilent Technologies [Hypertext Transfer Protocol ://World Wide Web (dot) chem. (dot) agilent (dot) com/Scripts/PDS (dot) asp?lPage=50879], The array oligonucleotide represents about 40,000 A. thaliana genes and transcripts designed based on data from the TIGR ATH1 v.5 database and Arabidopsis MPSS (University of Delaware) databases. To define correlations between the levels of RNA expression and yield, biomass components or vigor related parameters, various plant characteristics of 15 different Arabidopsis ecotypes were analyzed. Among them, nine ecotypes encompassing the observed variance were selected for RNA expression analysis. The correlation between the RNA levels and the characterized parameters was analyzed using Pearson correlation test [Hypertext Transfer Protocol ://World Wide Web (dot) davidmlane (dot) com/hyperstat/A34739 (dot) html].
Experimental procedures
RNA extraction - Five tissues at different developmental stages including root, leaf, flower at anthesis, seed at 5 days after flowering (DAF) and seed at 12 DAF, representing different plant characteristics, were sampled and RNA was extracted as
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132 described in Example 3 above. For convenience, each micro-array expression information tissue type has received a Set ID as summarized in Table 9 below.
Table 9
Tissues used for Arabidopsis transcriptom expression sets
Expression Set Set ID
Root A
Leaf B
Flower C
Seed 5 DAF D
Seed 12 DAF E
Table 9: Provided are the identification (ID) letters of each of the Arabidopsis expression sets (A-E). DAF = days after flowering.
Yield components and vigor related parameters assessment - eight out of the nine Arabidopsis ecotypes were used in each of 5 repetitive blocks (named A, B, C, D and E), each containing 20 plants per plot. The plants were grown in a greenhouse at controlled conditions in 22 °C, and the N:P:K fertilizer (20:20:20; weight ratios) [nitrogen (N), phosphorus (P) and potassium (K)] was added. During this time data was collected, documented and analyzed. Additional data was collected through the seedling stage of plants grown in a tissue culture in vertical grown transparent agar plates. Most of chosen parameters were analyzed by digital imaging.
Digital imaging in Tissue culture - A laboratory image acquisition system was used for capturing images of plantlets sawn in square agar plates. The image acquisition system consists of a digital reflex camera (Canon EOS 300D) attached to a 55 mm focal length lens (Canon EF-S series), mounted on a reproduction device (Kaiser RS), which included 4 light units (4x150 Watts light bulb) and located in a darkroom.
Digital imaging in Greenhouse - The image capturing process was repeated every 3-4 days starting at day 7 till day 30. The same camera attached to a 24 mm focal length lens (Canon EF series), placed in a custom made iron mount, was used for capturing images of larger plants sawn in white tubs in an environmental controlled greenhouse. The white tubs were square shape with measurements of 36 x 26.2 cm and 7.5 cm deep. During the capture process, the tubs were placed beneath the iron mount, while avoiding direct sun light and casting of shadows. This process was repeated every 3-4 days for up to 30 days.
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An image analysis system was used, which consists of a personal desktop computer (Intel P4 3.0
GHz processor) and a public domain program - ImageJ 1.37, Java based image processing program, which was developed at the U.S National Institutes of Health and is freely available on the internet at Hypertext Transfer Protocol ://rsbweb (dot) nih (dot) gov/. Images were captured in resolution of 6 Mega Pixels (3072 x 2048 pixels) and stored in a low compression JPEG (Joint Photographic Experts Group standard) format. Next, analyzed data was saved to text files and processed using the JMP statistical analysis software (SAS institute).
Leaf analysis - Using the digital analysis leaves data was calculated, including leaf number, area, perimeter, length and width. On day 30, 3-4 representative plants were chosen from each plot of blocks A, B and C. The plants were dissected, each leaf was separated and was introduced between two glass trays, a photo of each plant was taken and the various parameters (such as leaf total area, laminar length etc.) were calculated from the images. The blade circularity was calculated as laminar width divided by laminar length.
Root analysis - During 17 days, the different ecotypes were grown in transparent agar plates. The plates were photographed every 3 days starting at day 7 in the photography room and the roots development was documented (see examples in Figures 3A-F). The growth rate of roots was calculated according to Formula VIE
Formula VII:
Relative growth rate of root coverage = Regression coefficient of root coverage along time course.
Vegetative growth rate analysis - was calculated according to Formula VIII. The analysis was ended with the appearance of overlapping plants.
Formula VIII
Relative vegetative growth rate area = Regression coefficient of vegetative area along time course.
For comparison between ecotypes the calculated rate was normalized using plant developmental stage as represented by the number of true leaves. In cases where plants with 8 leaves had been sampled twice (for example at day 10 and day 13), only the largest sample was chosen and added to the Anova comparison.
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Seeds in siliques analysis - On day 70, 15-17 siliques were collected from each plot in blocks D and E. The chosen siliques were light brown color but still intact. The siliques were opened in the photography room and the seeds were scatter on a glass tray, a high resolution digital picture was taken for each plot. Using the images the 5 number of seeds per silique was determined.
Seeds average weight - At the end of the experiment all seeds from plots of blocks A-C were collected. An average weight of 0.02 grams was measured from each sample, the seeds were scattered on a glass tray and a picture was taken. Using the digital analysis, the number of seeds in each sample was calculated.
Oil percentage in seeds - At the end of the experiment all seeds from plots of blocks A-C were collected. Columbia seeds from 3 plots were mixed grounded and then mounted onto the extraction chamber. 210 ml of n-Hexane (Cat No. 080951 Biolab Ltd.) were used as the solvent. The extraction was performed for 30 hours at medium heat 50 °C. Once the extraction has ended the n-Hexane was evaporated using the evaporator at 35 °C and vacuum conditions. The process was repeated twice. The information gained from the Soxhlet extractor (Soxhlet, F. Die gewichtsanalytische Bestimmung des Milchfettes, Polytechnisches J. (Dingier's) 1879, 232, 461) was used to create a calibration curve for the Low Resonance NMR. The content of oil of all seed samples was determined using the Low Resonance NMR (MARAN Ultra- Oxford
Instrument) and its MultiQuant sowftware package.
Silique length analysis - On day 50 from sowing, 30 siliques from different plants in each plot were sampled in block A. The chosen siliques were green-yellow in color and were collected from the bottom parts of a grown plant’s stem. A digital photograph was taken to determine silique’s length.
Dry weight and seed yield - On day 80 from sowing, the plants from blocks A-C were harvested and left to dry at 30 °C in a drying chamber. The biomass and seed weight of each plot was separated, measured and divided by the number of plants. Dry weight = total weight of the vegetative portion above ground (excluding roots) after drying at 30 °C in a drying chamber; Seed yield per plant = total seed weight per plant (gr).
Oil yield - The oil yield was calculated using Formula IX.
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Formula IX:
Seed Oil yield = Seed yield per plant (gr) * Oil % in seed
Harvest Index (seed) - The harvest index was calculated using Formula IV (described above): Harvest Index = Average seed yield per plant/ Average dry weight.
Experimental Results
Nine different Arabidopsis ecotypes were grown and characterized for 18 parameters (named as vectors).
Table 10
Arabidopsis correlated parameters (vectors)
Correlated parameter with Correlation ID
Root length day 13 (cm) 1
Root length day 7 (cm) 2
Relative root growth (cm /day) day 13 3
Fresh weight per plant (gr) at bolting stage 4
Dry matter per plant (gr) 5
Vegetative growth rate (cm2 / day) till 8 true leaves 6
Blade circularity 7
Lamina width (cm) 8
Lamina length (cm) 9
Total leaf area per plant (cm) 10
1000 Seed weight (gr) 11
Oil % per seed 12
Seeds per silique 13
Silique length (cm) 14
Seed yield per plant (gr) 15
Oil yield per plant (mg) 16
Harvest Index 17
Leaf width/length 18
Table 10. Provided are the Arabidopsis correlated parameters (correlation ID Nos. 1-18). Abbreviations: Cm = centimeter(s); gr = gram(s); mg = milligram(s).
The characterized values are summarized in Tables 11 and 12 below.
Table 11
Measured parameters in Arabidopsis ecotypes
Ecotype 15 16 12 11 5 17 10 13 14
An-1 0.34 118.63 34.42 0.0203 0.64 0.53 46.86 45.44 1.06
Col-0 0.44 138.73 31.19 0.0230 1.27 0.35 109.89 53.47 1.26
Ct-1 0.59 224.06 38.05 0.0252 1.05 0.56 58.36 58.47 1.31
Cvi (N8580) 0.42 116.26 27.76 0.0344 1.28 0.33 56.80 35.27 1.47
Gr-6 0.61 218.27 35.49 0.0202 1.69 0.37 114.66 48.56 1.24
Kondara 0.43 142.11 32.91 0.0263 1.34 0.32 110.82 37.00 1.09
Ler-1 0.36 114.15 31.56 0.0205 0.81 0.45 88.49 39.38 1.18
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Ecotype 15 16 12 11 5 17 10 13 14
Mt-0 0.62 190.06 30.79 0.0226 1.21 0.51 121.79 40.53 1.18
Shakdara 0.55 187.62 34.02 0.0235 1.35 0.41 93.04 25.53 1.00
Table 11. Provided are the values of each of the parameters measured in Arabidopsis ecotypes: 15 = Seed yield per plant (gram); 16 = oil yield per plant (mg); 12 = oil % per seed; 11 = 1000 seed weight (gr); 5 = dry matter per plant (gr); 17 = harvest index; 10 = total leaf area per plant (cm); 13 = seeds per silique; 14 = Silique length (cm).
Table 12
Additional measured parameters in Arabidopsis ecotypes
Ecotype 6 3 2 1 4 9 8 18 7
An-1 0.313 0.631 0.937 4.419 1.510 2.767 1.385 0.353 0.509
Col-0 0.378 0.664 1.759 8.530 3.607 3.544 1.697 0.288 0.481
Ct-1 0.484 1.176 0.701 5.621 1.935 3.274 1.460 0.316 0.450
Cvi (N8580) 0.474 1.089 0.728 4.834 2.082 3.785 1.374 0.258 0.370
Gr-6 0.425 0.907 0.991 5.957 3.556 3.690 1.828 0.356 0.501
Kondara 0.645 0.774 1.163 6.372 4.338 4.597 1.650 0.273 0.376
Ler-1 0.430 0.606 1.284 5.649 3.467 3.877 1.510 0.305 0.394
Mt-0 0.384 0.701 1.414 7.060 3.479 3.717 1.817 0.335 0.491
Shakdar a 0.471 0.782 1.251 7.041 3.710 4.149 1.668 0.307 0.409
Table 12. Provided are the values of each of the parameters measured in Arabidopsis ecotypes: 6 = Vegetative growth rate (cm2/day) until 8 true leaves; 3 = relative root growth (cm/day) (day 13); 2 = Root length day 7 (cm); 1 = Root length day 13 (cm); 4 = fresh weight per plant (gr) at bolting stage; 9. = Lamima length (cm); 8 = Lamina width (cm); 18 = Leaf width/length; 7 = Blade circularity.
Table 13, below, provides selected genes of some embodiments of the invention, the characterized parameters (which are used as x axis for correlation) and the correlated tissue transcriptom along with the correlation value (R, calculated using Pearson correlation). When the correlation coefficient (R) between the levels of a gene’s expression in a certain tissue and a phenotypic performance across ecotypes is high in absolute value (between 0.5-1), there is an association between the gene (specifically the expression level of this gene) and the phenotypic character.
Table 13
Correlation between the expression level of selected genes in specific tissues or developmental stages and the phenotypic performance across Arabidopsis ecotypes
Gene Name Expression Set Correlation Vector R P
LYM88 E 13 0.75035 0.03198
LYM89 D 10 0.88062 0.00886
LYM89 D 4 0.84712 0.01614
LYM89 A 6 0.84690 0.00797
LYM89 D 5 0.83715 0.01879
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LYM89 D 6 0.70174 0.07884
LYM152 E 14 0.85500 0.00682
Table 13. Provided are the correlations between the expression level of yield improving genes and their homologs in specific tissues or developmental stages (expression sets) and the phenotypic performance (correlation vector) across Arabidopsis ecotypes. The phenotypic characters [correlation (Corr.) vector (Vec.)] include yield (seed yield, oil yield, oil content), biomass, growth rate and/or vigor components as described in Tables 10-12. Exp. Set = expression set according to Table 9 hereinabove.
EXAMPLE 5
PRODUCTION OF ARABIDOPSIS TRANSCRIPTOM AND HIGH THROUGHPUT CORRELATION ANALYSIS OF NORMAL AND NITROGEN LIMITING CONDITIONS USING 44K ARABIDOPSIS OLIGONUCLEOTIDE MICRO-ARRAY
In order to produce a high throughput correlation analysis, the present inventors utilized a Arabidopsis oligonucleotide micro-array, produced by Agilent Technologies [Hypertext Transfer Protocol://World Wide Web (dot) chem (dot) agilent (dot) com/Scripts/PDS (dot) asp?lPage=50879], The array oligonucleotide represents about 44,000 Arabidopsis genes and transcripts. To define correlations between the levels of RNA expression with NUE, yield components or vigor related parameters various plant characteristics of 14 different Arabidopsis ecotypes were analyzed. Among them, ten ecotypes encompassing the observed variance were selected for RNA expression analysis. The correlation between the RNA levels and the characterized parameters was analyzed using Pearson correlation test [Hypertext Transfer Protocol://World Wide Web (dot) davidmlane (dot) com/hyperstat/A34739 (dot) html].
Experimental procedures
RNA extraction - Two tissues of plants [leaves and stems] growing at two different nitrogen fertilization levels (1.5 rnM Nitrogen or 6 mM Nitrogen) were sampled and RNA was extracted as described in Examples 3 above. For convenience, each micro-array expression information tissue type has received a Set ID as summarized in Table 14 below.
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Table 14
Tissues used for Arabidopsis transcriptom expression sets
Expression Set Set ID
Leaves at 1.5 mM Nitrogen fertilization A
Leaves at 6 mM Nitrogen fertilization B
Stems at 1.5 mM Nitrogen fertilization C
Stem at 6 mM Nitrogen fertilization D
Table 14: Provided are the identification (ID) letters of each of the Arabidopsis expression sets.
Assessment of Arabidopsis yield components and vigor related parameters under different nitrogen fertilization levels - 10 Arabidopsis accessions in 2 repetitive plots each containing 8 plants per plot were grown at greenhouse. The growing protocol used was as follows: surface sterilized seeds were sown in Eppendorf tubes containing 0.5 x Murashige-Skoog basal salt medium and grown at 23 °C under 12-hour light and 12-hour dark daily cycles for 10 days. Then, seedlings of similar size were carefully transferred to pots filled with a mix of perlite and peat in a 1:1 ratio. Constant nitrogen limiting conditions were achieved by irrigating the plants with a solution containing 1.5 mM inorganic nitrogen in the form of KNO3, supplemented with 2 mM CaCfi, 1.25 mM KH2PO4, 1.50 mM MgSCE, 5 mM KC1, 0.01 mM H3BO3 and microelements, while normal irrigation conditions (Normal Nitrogen conditions) was achieved by applying a solution of 6 mM inorganic nitrogen also in the form of KNO3, supplemented with 2 mM CaCfi, 1.25 mM KH2PO4, 1.50 mM MgSCE, 0.01 mM H3BO3 and microelements. To follow plant growth, trays were photographed the day nitrogen limiting conditions were initiated and subsequently every 3 days for about 15 additional days. Rosette plant area was then determined from the digital pictures. ImageJ software was used for quantifying the plant size from the digital pictures [Hypertext Transfer Protocol://rsb (dot) info (dot) nih (dot) gov/ij/] utilizing proprietary scripts designed to analyze the size of rosette area from individual plants as a function of time. The image analysis system included a personal desktop computer (Intel P4 3.0 GHz processor) and a public domain program - ImageJ 1.37 (Java based image processing program, which was developed at the U.S. National Institutes of Health and freely available on the internet [Hypertext Transfer Protocol://rsbweb (dot) nih (dot) gov/]. Next, analyzed data was saved to text files and processed using the JMP statistical analysis software (SAS institute).
Data parameters collected are summarized in Table 15, hereinbelow.
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Table 15
Arabidopsis correlated parameters (vectors)
Correlated parameter with Correlation Id
N 1.5 mM; Rosette Area at day 8 [cm2] 1
N 1.5 mM; Rosette Area at day 10 [cm2] 2
N 1.5 mM; Plot Coverage at day 8 [%] 3
N 1.5 mM; Plot Coverage at day 10 [%] 4
N 1.5 mM; Leaf Number at day 10 5
N 1.5 mM; Leaf Blade Area at day 10 [cm2] 6
N 1.5 mM; RGR of Rosette Area at day 3 [cm2/day] 7
N 1.5 mM; t50 Flowering [day] 8
N 1.5 mM; Dry Weight [gr/plant] 9
N 1.5 mM; Seed Yield [gr/plant] 10
N 1.5 mM; Harvest Index 11
N 1.5 mM; 1000 Seeds weight [gr] 12
N 1.5 mM; seed yield/ rosette area at day 10 [gr/cm2] 13
N 1.5 mM; seed yield/leaf blade [gr/cm2] 14
N 1.5 mM; % Seed yield reduction compared to N 6 mM 15
N 1.5 mM; % Biomass reduction compared to N 6 mM 16
N 1.5 mM; N level /DW [SPAD unit/gr] 17
N 1.5 mM; DW/ N level [gr/ SPAD unit] 18
N 1.5 mM; seed yield/ N level [gr/ SPAD unit] 19
N 6 mM; Rosette Area at day 8 [cm2] 20
N 6 mM; Rosette Area at day 10 [cm2] 21
N 6 mM; Plot Coverage at day 8 [%] 22
N 6 mM; Plot Coverage at day 10 [%] 23
N 6 mM; Leaf Number at day 10 24
N 6 mM; Leaf Blade Area at day 10 25
N 6 mM; RGR of Rosette Area at day 3 [cm2/gr] 26
N 6 mM; t50 Flowering [day] 27
N 6 mM; Dry Weight [gr/plant] 28
N 6 mM; Seed Yield [gr/plant] 29
N 6 mM; Harvest Index 30
N 6 mM; 1000 Seeds weight [gr] 31
N 6 mM; seed yield/ rosette area day at day 10 [gr/cm2] 32
N 6 mM; seed yield/leaf blade [gr/cm2] 33
N 6 mM; N level / FW 34
N 6 mM; DW/ N level [gr/ SPAD unit] 35
N 6 mM; N level /DW (SPAD unit/gr plant) 36
N 6 mM; Seed yield/N unit [gr/ SPAD unit] 37
Table 15. Provided are the Arabidopsis correlated parameters (vectors). “N” =
Nitrogen at the noted concentrations; “gr.” = grams; “SPAD” = chlorophyll levels; “t50” = time where 50% of plants flowered; “gr/ SPAD unit” = plant biomass expressed in grams per unit of nitrogen in plant measured by SPAD. “DW” = Plant Dry Weight; FW = Plant Fresh weight; “N level /DW” = plant Nitrogen level measured in SPAD unit per plant biomass [gr]; “DW/ N level” = plant biomass per 10 plant [gr]/SPAD unit; Rosette Area (measured using digital analysis); Plot Coverage at the indicated day [%] (calculated by the dividing the total plant area with the total plot
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140 area); Leaf Blade Area at the indicated day [cm2] (measured using digital analysis); RGR (relative growth rate) of Rosette Area at the indicated day [cm2/day]; t50 Flowering [day] (the day in which 50% of plant flower); seed yield/ rosette area at day 10 [gr/cm2] (calculated); seed yield/leaf blade [gr/cm2] (calculated); seed yield/ N level [gr/ SPAD unit] (calculated).
Assessment of NUE, yield components and vigor-related parameters - Ten Arabidopsis ecotypes were grown in trays, each containing 8 plants per plot, in a greenhouse with controlled temperature conditions for about 12 weeks. Plants were irrigated with different nitrogen concentration as described above depending on the treatment applied. During this time, data was collected documented and analyzed. Most of chosen parameters were analyzed by digital imaging.
Digital imaging - Greenhouse assay
An image acquisition system, which consists of a digital reflex camera (Canon EOS 400D) attached with a 55 mm focal length lens (Canon EF-S series) placed in a custom made Aluminum mount, was used for capturing images of plants planted in containers within an environmental controlled greenhouse. The image capturing process is repeated every 2-3 days starting at day 9-12 till day 16-19 (respectively) from transplanting.
An image processing system was used, which consists of a personal desktop computer (Intel P4 3.0 GHz processor) and a public domain program - ImageJ 1.37, Java based image processing software, which was developed at the U.S. National Institutes of Health and is freely available on the internet at Hypertext Transfer Protocol ://rsbweb (dot) nih (dot) gov/. Images were captured in resolution of 10 Mega Pixels (3888x2592 pixels) and stored in a low compression JPEG (Joint Photographic Experts Group standard) format. Next, image processing output data was saved to text files and analyzed using the JMP statistical analysis software (SAS institute).
Leaf analysis - Using the digital analysis leaves data was calculated, including leaf number, leaf blade area, plot coverage, Rosette diameter and Rosette area.
Relative growth rate area'. The relative growth rate of the rosette and the leaves was calculated according to Formulas XIV and XVII, respectively.
Seed yield and 1000 seeds weight - At the end of the experiment all seeds from all plots were collected and weighed in order to measure seed yield per plant in terms of total seed weight per plant (gr). For the calculation of 1000 seed weight, an average
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141 weight of 0.02 grams was measured from each sample, the seeds were scattered on a glass tray and a picture was taken. Using the digital analysis, the number of seeds in each sample was calculated.
Dry weight and seed yield - At the end of the experiment, plant were harvested and left to dry at 30 °C in a drying chamber. The biomass was separated from the seeds, weighed and divided by the number of plants. Dry weight = total weight of the vegetative portion above ground (excluding roots) after drying at 30 °C in a drying chamber.
Harvest Index (seed) - The harvest index was calculated using Formula IV as described above [Harvest Index = Average seed yield per plant/ Average dry weight],
T50 days to flowering - Each of the repeats was monitored for flowering date. Days of flowering was calculated from sowing date till 50 % of the plots flowered.
Plant nitrogen level - The chlorophyll content of leaves is a good indicator of the nitrogen plant status since the degree of leaf greenness is highly correlated to this parameter. Chlorophyll content was determined using a Minolta SPAD 502 chlorophyll meter and measurement was performed at time of flowering. SPAD meter readings were done on young fully developed leaf. Three measurements per leaf were taken per plot. Based on this measurement, parameters such as the ratio between seed yield per nitrogen unit [seed yield/N level = seed yield per plant [gr]/SPAD unit], plant DW per nitrogen unit [DW/ N level= plant biomass per plant [g]/SPAD unit], and nitrogen level per gram of biomass [N level/DW= SPAD unit/ plant biomass per plant (gr)] were calculated.
Percent of seed yield reduction- measures the amount of seeds obtained in plants when grown under nitrogen-limiting conditions compared to seed yield produced at normal nitrogen levels expressed in %.
Experimental Results different Arabidopsis accessions (ecotypes) were grown and characterized for 37 parameters as described above. The average for each of the measured parameters was calculated using the JMP software. Subsequent correlation analysis between the various transcriptom sets (Table 14) was conducted. Following are the results integrated to the database.
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Table 16
Correlation between the expression level of selected genes of the invention and their homologs in tissues under limiting or normal nitrogen fertilization and the phenotypic performance across Arabidopsis ecotypes
Gene Name Expression Set Correlation Vector R P
LYM88 C 17 0.93533 0.01955
LYM88 LYM8 Hl D D 16 31 0.79502 0.745282 0.01044 0.021184
LYM10 H7 C 24 0.895562 0.000458
LYM10 H7 C 5 0.77817 0.008026
LYM10 H7 C 21 0.725922 0.017459
LYM10 H7 C 2 0.717752 0.019423
LYM10 H8 C 8 0.850748 0.001806
LYM10 H8 C 27 0.7752 0.008432
LYM10 H8 C 15 0.77175 0.008921
LYM10 H9 A 1 0.844351 0.002119
LYM10 H9 A 2 0.755723 0.01146
LYM10 H9 A 20 0.733447 0.015776
LYM10 H9 A 21 0.722114 0.018356
LYM14 H2 B 27 0.892136 0.000519
LYM14 H2 B 8 0.830273 0.002942
LYM14 H2 C 8 0.816286 0.003967
LYM14 H2 C 8 0.794197 0.006071
LYM14 H2 C 27 0.767463 0.009557
LYM14 H2 C 27 0.733255 0.015818
LYM14 H2 D 1 0.725116 0.027066
LYM14 H3 B 15 0.855842 0.001582
LYM14 H3 C 8 0.802977 0.005158
LYM14 H3 B 8 0.79811 0.005651
LYM14 H3 B 12 0.792747 0.006233
LYM14 H3 B 27 0.785721 0.007057
LYM14 H3 C 27 0.734206 0.015613
LYM14 H3 A 9 0.720081 0.018848
LYM137 Hll C 20 0.815207 0.004055
LYM137 Hll C 21 0.79814 0.005648
LYM137 Hll D 5 0.754601 0.018779
LYM137 Hll C 24 0.701843 0.023676
LYM152 Hl D 5 0.714383 0.030592
LYM152 Hl D 5 0.713442 0.030914
LYM236 H4 B 27 0.937557 6.17E-05
LYM236 H4 B 8 0.921247 0.000153
LYM236 H4 B 15 0.865782 0.001204
LYM236 H4 B 28 0.709595 0.02153
LYM236 H5 A 10 0.737484 0.014922
LYM236 H5 B 10 0.71158 0.021004
Table 16. Provided are the correlations (R) between the expression levels of yield improving genes and their homologs in tissues (leaves or stems) under limiting (1.5 rnM Nitrogen) or normal (6 mM Nitrogen) conditions (Expression sets) and the phenotypic performance in various yield (seed yield, oil yield, oil content), biomass, growth rate and/or vigor components [Correlation (Corr.) vector (Vec.)] under limiting or normal Nitrogen conditions. Corr. Vec. = correlation vector according to Table 15 hereinabove; Exp. Set = expression set according to Table 14 hereinabove.
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143 EXAMPLE 6 PRODUCTION OF SORGHUM TRANSCRIPTOM AND HIGH THROUGHPUT CORRELATION ANALYSIS WITH ABST RELATED PARAMETRERS USING 44K SORGUHM OLIGONUCLEOTIDE MICRO-ARRAYS
In order to produce a high throughput correlation analysis, the present inventors utilized a Sorghum oligonucleotide micro-array, produced by Agilent Technologies [Hypertext Transfer Protocol ://World Wide Web (dot) chem. (dot) agilent (dot) com/Scripts/PDS (dot) asp?lPage=50879], The array oligonucleotide represents about 44,000 Sorghum genes and transcripts. In order to define correlations between the levels of RNA expression with ABST and yield components or vigor related parameters, various plant characteristics of 17 different sorghum varieties were analyzed. Among them, 10 varieties encompassing the observed variance were selected for RNA expression analysis. The correlation between the RNA levels and the characterized parameters was analyzed using Pearson correlation test [Hypertext Transfer Protocol://World Wide Web (dot) davidmlane (dot) com/hyperstat/A34739 (dot) html].
Correlation of Sorghum varieties across ecotype grown under severe drought conditions
Experimental procedures
Sorghum varieties were grown in 3 repetitive plots, in field. Briefly, the growing protocol was as follows: sorghum seeds were sown in soil and grown under normal condition until around 35 days from sowing, around V8 (Last leaf visible, but still rolled up, ear beginning to swell). At this point, irrigation was stopped, and severe drought stress was developed. In order to define correlations between the levels of RNA expression with drought, yield components or vigor related parameters, the 17 different sorghum varieties were analyzed. Among them, 10 varieties encompassing the observed variance were selected for RNA expression analysis. The correlation between the RNA levels and the characterized parameters was analyzed using Pearson correlation test [Hypertext Transfer Protocol://World Wide Web (dot) davidmlane (dot) com/hyperstat/A34739 (dot) html],
RNA extraction - All 10 selected Sorghum varieties were sample per each treatment. Plant tissues [Flag leaf, Flower meristem and Flower] growing under severe
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144 drought stress and plants grown under Normal conditions were sampled and RNA was extracted as described in Examples 3 above. For convenience, each micro-array expression information tissue type has received a Set ID as summarized in Table 17 below.
Table 17
Sorghum transcriptom expression sets
Expression Set Set ID
Sorghum field/Normal/flower meristem 1
Sorghum field/Normal/flower 2
Sorghum field/Normal/flag leaf 3
Drought Stress: Flag leaf 4
Table 17: Provided are the sorghum transcriptom expression sets 1, 2, 3 and 4. Flag leaf = the leaf below the flower; Flower meristem = Apical meristem following panicle initiation; Flower = the flower at the anthesis day. Expression sets 1, 2 and 3 are from plants grown under normal conditions. Expression set 4 derived from plants grown under drought conditions.
The following parameters were collected using digital imaging system:
Average Grain Area (cm2) - At the end of the growing period the grains were separated from the Plant ‘Head’. A sample of ~200 grains were weight, photographed and images were processed using the below described image processing system. The grain area was measured from those images and was divided by the number of grains.
Average Grain Length (cm) - At the end of the growing period the grains were separated from the Plant ‘Head’. A sample of ~200 grains were weight, photographed and images were processed using the below described image processing system. The sum of grain lengths (longest axis) was measured from those images and was divided by the number of grains.
Head Average Area (cm2) At the end of the growing period 5 ‘Heads’ were, photographed and images were processed using the below described image processing system. The ‘Head’ area was measured from those images and was divided by the number of ‘Heads’.
Head Average Length (cm) At the end of the growing period 5 ‘Heads’ were, photographed and images were processed using the below described image processing system. The ‘Head’ length (longest axis) was measured from those images and was divided by the number of ‘Heads’.
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The image processing system was used, which consists of a personal desktop computer (Intel P4 3.0 GHz processor) and a public domain program - ImageJ 1.37, Java based image processing software, which was developed at the U.S. National Institutes of Health and is freely available on the internet at Hypertext Transfer Protocol ://rsbweb (dot) nih (dot) gov/. Images were captured in resolution of 10 Mega Pixels (3888x2592 pixels) and stored in a low compression JPEG (Joint Photographic Experts Group standard) format. Next, image processing output data for seed area and seed length was saved to text files and analyzed using the JMP statistical analysis software (SAS institute).
Additional parameters were collected either by sampling 5 plants per plot or by measuring the parameter across all the plants within the plot.
Total Seed Weight/Head (gr.) - At the end of the experiment (plant ‘Heads’) heads from plots within blocks A-C were collected. 5 heads were separately threshed and grains were weighted, all additional heads were threshed together and weighted as well. The average grain weight per head was calculated by dividing the total grain weight by number of total heads per plot (based on plot). In case of 5 heads, the total grains weight of 5 heads was divided by 5.
FW Head/Plant gr - At the end of the experiment (when heads were harvested) total and 5 selected heads per plots within blocks A-C were collected separetaly. The heads (total and 5) were weighted (gr.) separately and the average fresh weight per plant was calculated for total (FW Head/Plant gr based on plot) and for 5 (FW Head/Plant gr based on 5 plants).
Plant height - Plants were characterized for height during growing period at 5 time points. In each measure, plants were measured for their height using a measuring tape. Height was measured from ground level to top of the longest leaf.
Plant leaf number - Plants were characterized for leaf number during growing period at 5 time points. In each measure, plants were measured for their leaf number by counting all the leaves of 3 selected plants per plot.
Relative Growth Rate was calculated using Formulas X and XI.
Formula X
Relative growth rate of plant height = Regression coefficient of plant height along time course.
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Formula XI
Relative growth rate of plant leaf number = Regression coefficient of plant leaf number along time course.
SPAD - Chlorophyll content was determined using a Minolta SPAD 502 chlorophyll meter and measurement was performed 64 days post sowing. SPAD meter readings were done on young fully developed leaf. Three measurements per leaf were taken per plot.
Vegetative dry weight and Heads - At the end of the experiment (when Inflorescence were dry) all Inflorescence and vegetative material from plots within blocks A-C were collected. The biomass and Heads weight of each plot was separated, measured and divided by the number of Heads.
Dry weight = total weight of the vegetative portion above ground (excluding roots) after drying at 70 °C in oven for 48 hours;
Harvest Index (HI) (Sorghum)- The harvest index was calculated using Formula XII.
Formula XII:
Harvest Index = Average grain dry weight per Head / (Average vegetative dry weight per Head + Average Head dry weight)
FW Heads/(FW Heads + FW Plants) - The total fresh weight of heads and their respective plant biomass were measured at the harvest day. The heads weight was divided by the sum of weights of heads and plants.
Experimental Results different sorghum varieties were grown and characterized for different parameters: The average for each of the measured parameter was calculated using the JMP software (Tables 19-20) and a subsequent correlation analysis between the various transcriptom sets (Table 17) and the average parameters, was conducted (Tables 21). Results were then integrated to the database.
Table 18
Sorghum correlated parameters (vectors)
Correlation Vector Correlation Id
Average Seed Area cm2-normal A
Average Seed Length cm-normal B
FW/Plant gr based on plot-normal C
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FW Head/Plant gr based on 5 plants-normal D
FW Head/Plant gr based on plot-normal E
FW Heads/(FW Heads + FW Plants) based on plot-normal F
Head Average Area cm2-normal G
Head Average Length cm-normal H
HI-normal J
Leaf SPAD 64 Days Post Sowing-normal K
Relative Growth Rate of Leaf Num-normal L
Relative Growth Rate of Plant Height-normal M
Total Seed Weight/Head gr based on plot-normal N
Total Seed Weight /Head gr based on 5 heads-normal O
Table 18. Provided are the Sorghum correlated parameters (vectors), “gr.” = grams; “SPAD” = chlorophyll levels; FW = Plant Fresh weight;’’normal” = standard growth conditions.
Table 19
Measured parameters in Sorghum accessions
Seed Id A B C D E F G II J
20 0.1047 0.3856 162.6 406.5 175.2 0.51 120.1 25.58 200.7
21 0.1124 0.4017 212.6 518 223.5 0.5101 167.6 26.84 127
22 0.1313 0.4446 334.8 148 56.4 0.1154 85.14 21.02 51.8
24 0.1293 0.4496 313.5 423 111.6 0.2626 157.3 26.84 122.4
25 0.1204 54.53
26 0.177 93.92
27 0.1098 0.3999 151.1 423.5 126.2 0.4591 168.5 31.33 327.3
28 0.1134 0.4054 137.6 386.5 107.7 0.4316 109.3 23.18 231.5
29 0.1022 0.3837 168 409.5 123.9 0.4249 135.1 25.7 241.4
30 0.118 0.4186 129 328.9 102.8 0.4416 169 28.82 304.1
31 0.1205 0.4302 97.62 391 82.33 0.4581 156.1 28.13 335.6
32 0.1106 0.4003 99.32 435.8 77.59 0.4473 112.1 22.97 349.6
33 0.1165 0.4094 112.2 429.5 91.17 0.4474 154.7 28.09 293.2
34 0.108 0.4008 157.4 441 150.4 0.5134 171.7 30 410.9
35 0.1048 0.3947 130.5 415.8 109.1 0.4595 168.5 30.54 285.1
36 0.1097 0.3953 135.7 429.5 107.6 0.4425 162.5 27.17 282.7
37 0.1053 0.3924 209.2 428.5 130.9 0.3856 170.5 29.26 204
Table 19: Provided are the values of each of the parameters (as described above) measured in Sorghum accessions (Seed ID) under normal and drought conditions.
Growth conditions are specified in the experimental procedure section.
Table 20
Additional measured parameters in Sorghum accessions
Seed Id L M N O
20 0.1032 1.891 31.12 47.4
21 1.622 26.35 46.3
22 0.2128 3.418 18.72 28.37
24 0.1862 2.425 38.38 70.4
25 0.1898 3.118
26 0.1599 3.323
27 0.1957 2.178 47.67 63.45
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Seed Id L M N O
28 0.1694 2.188 31 44.45
29 0.1821 2.572 39.99 56.65
30 2.046 38.36 60
31 2.069 32.1 45.45
32 0.1754 2.547 32.69 58.19
33 0.117 2.327 32.79 70.6
34 0.207 3.039 51.53 70.1
35 0.1859 2.335 35.71 53.95
36 0.151 2.516 38.31 59.87
37 0.24 2.81 42.44 52.65
Table 20: Provided are the values of each of the parameters (as c escribed above)
measured in Sorghum accessions (Seed ID) under normal and drought conditions. Growth conditions are specified in the experimental procedure section.
Table 21
Correlation between the expression level of selected genes of some embodiments of the invention in various tissues and the phenotypic performance under normal or abiotic stress conditions across Sorghum accessions
Gene Name Cluster Name Exp. Set Corr. Vec. R P
LYM174 sorghum |gbl61.crp|AW284303 1 J 0.746 0.013251
LYM263 sorghum|gb 161 ,crp| AI622410 2 O 0.860 0.00292
LYM263 sorghum|gb 161 ,crp| AI622410 2 J 0.847 0.00196
LYM5 H21 sorghum| 09v 11SB04G031180 1 B 0.898 0.00101
LYM5 H21 sorghum 09vl SB04G031180 1 A 0.896 0.00107
LYM8 H23 sorghum 09vl SB01G000490 1 O 0.755 0.018718
LYM8 H23 sorghum 09vl SB01G000490 2 O 0.714 0.030884
LYM10H272 sorghum 09vl SB04G005280 3 L 0.756 0.029952
LYM14 H44 sorghum 09v 1 SB02G044050 2 E 0.769 0.015504
LYM24H10 sorghum 09vl SB03G044280 2 C 0.774 0.014343
LYM24H10 sorghum 09vl SB03G044280 3 B 0.743 0.021898
LYM24H10 sorghum 09vl SB03G044280 3 A 0.728 0.026226
LYM35 H7 sorghum 09vl SB06G031730 2 E 0.823 0.006385
LYM73 H8 sorghum 09vl SB07G0043 00 1 E 0.748 0.02039
LYM82H16 sorghum 09v 1 SB 10G002420 3 J 0.783 0.007439
LYM82H16 sorghum 09v 1 SB 10G002420 3 N 0.780 0.013111
LYM82H16 sorghum 09v 1 SB 10G002420 3 O 0.726 0.02673
LYM82H16 sorghum 09v 1 SB 10G002420 3 G 0.723 0.027818
LYM111 H10 sorghum 09vl SB03G036350 3 C 0.892 0.00122
LYM111 H10 sorghum 09vl SB03G036350 3 A 0.753 0.019062
LYM111 H10 sorghum 09vl SB03G036350 3 B 0.702 0.035192
LYM119H1 sorghum 09vl SB05G003680 2 C 0.759 0.017691
LYM131 H19 sorghum 09vlSB06G027970 1 E 0.841 0.004488
LYM131 H19 sorghum 09vlSB06G027970 3 B 0.787 0.011775
LYM131 H19 sorghum 09vlSB06G027970 3 A 0.762 0.017013
LYM131 H19 sorghum 09vlSB06G027970 1 F 0.700 0.024184
LYM131 H20 sorghum 09vl SB07G006320 1 E 0.854 0.003353
LYM137H285 sorghum 09vl SB06G021660 2 F 0.747 0.013056
LYM137H285 sorghum 09vl SB06G021660 1 E 0.716 0.030132
LYM137H286 sorghum 09vl SB 10G005240 1 E 0.786 0.012037
LYM140 H27 sorghum|09vl|SB06G028990 1 C 0.772 0.014832
LYM148 H14 sorghum 09vl SB10G026570 1 B 0.812 0.007885
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Gene Name Cluster Name Exp. Set Corr. Vec. R P
LYM148 H14 sorghum 09vlSB10G026570 1 A 0.770 0.015311
LYM148 H14 sorghum 09vlSB10G026570 1 C 0.768 0.015705
LYM162 H7 sorghum|09vl|SB03G043995 1 N 0.837 0.004911
LYM215 H2 sorghum|09vl|SB03G043980 1 N 0.718 0.029262
LYM178 H13 sorghum|09vl|SB03G008890 3 B 0.862 0.002833
LYM178 H13 sorghum|09vl|SB03G008890 3 A 0.792 0.010892
LYM178 H14 sorghum|09vl|SB07G001060 2 A 0.768 0.01572
LYM179 HO sorghum|09vl|SB08G006470 1 O 0.818 0.006992
LYM109 H2 sorghum|09vl|SB05G003660 1 B 0.762 0.017077
LYM109 H2 sorghum|09vl|SB05G003660 3 A 0.751 0.019579
LYM109 H2 sorghum|09vl|SB05G003660 1 A 0.732 0.025074
LYM112H2 sorghum| 09v 11SB02G039985 1 B 0.827 0.005944
LYM112H2 sorghum| 09v 11SB02G039985 3 B 0.790 0.011246
LYM112H2 sorghum| 09v 11SB02G039985 1 A 0.789 0.011426
LYM112H2 sorghum| 09v 11SB02G039985 3 A 0.701 0.035452
LYM123 H7 sorghum|09vl|SB06G031680 1 B 0.769 0.015524
LYM181 H6 sorghum| 09v 11SB02G034110 1 B 0.740 0.022556
LYM181 H6 sorghum| 09v 11SB02G034110 3 N 0.724 0.027264
LYM181 H6 sorghum| 09v 11SB02G034110 3 O 0.702 0.035114
LYM182H12 sorghum| 09v 11SB06G015280 1 E 0.767 0.015834
LYM206 H2 sorghum|09vl|SB07G021090 3 N 0.795 0.010488
LYM188H13 sorghum| 09v 11SBO1G007950 1 E 0.788 0.011658
LYM198 Hl sorghum|09vl|SB01G045460 1 E 0.829 0.005689
LYM201 H37 sorghum| 09v 11SB04G0223 50 2 N 0.741 0.022246
LYM201 H37 sorghum| 09v 11SB04G0223 50 2 D 0.709 0.032326
LYM201 H37 sorghum| 09v 11SB04G0223 50 2 H 0.701 0.035468
LYM207 H3 sorghum|09vl|SB06G023870 3 K 0.781 0.007669
LYM207 H3 sorghum|09vl|SB06G023870 1 E 0.768 0.015595
LYM207 H3 sorghum|09vl|SB06G023870 3 O 0.718 0.029344
LYM207 H3 sorghum|09vl|SB06G023870 1 N 0.716 0.02988
LYM208 H8 sorghum|09vl|SB01G032070 1 N 0.734 0.024302
LYM208 H8 sorghum|09vl|SB01G032070 1 E 0.701 0.03525
LYM212H9 sorghum| 09v 11 SBO 1G045480 1 E 0.841 0.004537
LYM221 H3 sorghum| 09v 11 SBO 1G034610 2 A 0.728 0.02604
LYM221 H3 sorghum| 09v 11 SBO 1G034610 2 C 0.721 0.028264
LYM224 H3 sorghum|09vl|SB02G040000 3 C 0.835 0.005096
LYM224 H3 sorghum|09vl|SB02G040000 3 L 0.827 0.011397
LYM224 H3 sorghum|09vl|SB02G040000 3 M 0.708 0.021888
LYM232 H3 sorghum|09vl|SB02G000450 1 O 0.808 0.00839
LYM232 H3 sorghum|09vl|SB02G000450 1 N 0.759 0.017814
LYM236H139 sorghum| 09v 11SB09G029110 1 A 0.859 0.00303
LYM236H139 sorghum| 09v 11SB09G029110 1 B 0.836 0.004971
LYM248 H5 sorghum|09vl|SB04G000645 3 L 0.878 0.004118
LYM248 H5 sorghum|09vl|SB04G000645 1 N 0.868 0.002424
LYM183 Hll sorghum|09vl|SB01G003070 1 E 0.832 0.005437
LYM183 Hll sorghum|09vl|SB01G003070 1 N 0.749 0.020124
LYM267 Hl sorghum| 09v 11 SBO 1G044240 2 A 0.797 0.010102
LYM267 Hl sorghum| 09v 11 SBO 1G044240 2 B 0.753 0.019206
LYM267 Hl sorghum| 09v 11 SBO 1G044240 1 H 0.707 0.033248
LYM267 Hl sorghum| 09v 11 SBO 1G044240 1 O 0.705 0.033872
LYM267 Hl sorghum| 09v 11 SBO 1G044240 1 N 0.705 0.033976
LYM270 HO sorghum|09vl ISB02G040045 1 E 0.820 0.006742
LYM271 H10 sorghum|09vl ISB02G040020 1 N 0.780 0.013152
LYM273 H6 sorghum| 09v 11SB03G044410 3 B 0.955 5.91E-05
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Gene Name Cluster Name Exp. Set Corr. Vec. R P
LYM273 H6 sorghum| 09v 11SB03G044410 3 A 0.950 8.6E-05
LYM284 H24 sorghum|09vl|SB03G027960 1 E 0.867 0.00247
LYM289 H52 sorghum|09vl|SB09G005410 3 O 0.928 0.000307
LYM289 H52 sorghum|09vl|SB09G005410 3 N 0.830 0.005588
LYM289 H52 sorghum|09vl|SB09G005410 3 H 0.781 0.012924
LYM289 H52 sorghum|09vl|SB09G005410 3 G 0.714 0.03066
LYM289 H52 sorghum|09vl|SB09G005410 3 D 0.704 0.03412
LYM290 Hl3 sorghum 09vlSB01G009390 1 E 0.766 0.01617
Table 21. Provided are the correlations (R) between the expression levels of yield improving genes and their homologs in tissues (Flag leaf, Flower meristem and Flower; Expression (Exp.) sets) and the phenotypic performance in various yield, biomass, growth rate and/or vigor components [Correlation (Corr.) vector (Vec.)] under stress conditions or normal conditions across Sorghum accessions.
Sorghum vigor related parameters under 100 mM NaCl and low temperature (10 ±2 °C) -Ten Sorghum varieties were grown in 3 repetitive plots, each containing 17 plants, at a net house under semi-hydroponics conditions. Briefly, the growing protocol was as follows: Sorghum seeds were sown in trays filled with a mix of vermiculite and peat in a 1:1 ratio. Following germination, the trays were transferred to the high salinity solution (100 mM NaCl in addition to the Full Hogland solution), low temperature (10 ± 2 °C in the presence of Full Hogland solution) or at Normal growth solution [Full Hogland solution at 28 ± 2 °C],
Full Hogland solution consists of: KNO3 - 0.808 grams/liter, MgSO4 - 0.12 grams/liter, KH2PO4 - 0.172 grams/liter and 0.01 % (volume/volume) of ‘Super coratin' micro elements (Iron-EDDHA [ethylenediamine-N,N'-bis(2-hydroxyphenylacetic acid)]- 40.5 grams/liter; Mn - 20.2 grams/liter; Zn 10.1 grams/liter; Co 1.5 grams/liter; and Mo 1.1 grams/liter), solution’s pH should be 6.5 - 6.8],
RNA extraction - All 10 selected Sorghum varieties were sampled per each treatment. Two tissues [leaves and roots] growing at 100 mM NaCl, low temperature (10 ± 2 °C) or under Normal conditions (full Hogland at a temperature between 28 ± 2 °C) were sampled and RNA was extracted as described in Example 3 above.
Table 22
Sorghum transcriptom expression sets
Expression Set Set ID
Sorghum roots under cold 1
Sorghum vegetative meristem NaCl 2
Sorghum vegetative meristem under low nitrogen 3
Sorghum vegetative meristem under cold conditions 4
Sorghum roots under NaCl 5
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Expression Set Set ID
Sorghum vegetative meristem under normal conditions 6
Sorghum roots under low nitrogen 7
Sorghum roots under normal 8
Table 22: Provided are the Sorghum transcriptom expression sets. Cold conditions = 10 ± 2 °C; NaCl = 100 rnM NaCl; low nitrogen =1.2 mM Nitrogen; Normal conditions = 16 rnM Nitrogen.
Experimental Results different Sorghum varieties were grown and characterized for the following parameters: Leaf number Normal = leaf number per plant under normal conditions (average of five plants); Plant Height Normal = plant height under normal conditions (average of five plants); Root DW 100 rnM NaCl - root dry weight per plant under salinity conditions (average of five plants); The average for each of the measured parameter was calculated using the JMP software and values are summarized in Table 24 below. Subsequent correlation analysis between the various transcriptom sets and the average parameters were conducted (Table 25). Results were then integrated to the database.
Table 23
Sorghum correlated parameters (vectors)
Correlation Vector Corr. Id
DW Root/Plant - Cold A
DW Root/Plant - 100 mM NaCl B
DW Shoot/Plant - Low Nitrogen C
DW Root/Plant - Low Nitrogen D
Leaf number TP-3* - Cold E
Leaf number TP-3*- 100 mM NaCl F
Plant Height TP-3*- 100 mM NaCl G
DW Shoot/Plant - Cold H
DW Shoot/Plant - Normal I
Plant Height TP-3* - Low Nitrogen J
Leaf number TP-3* - Low Nitrogen K
DW Shoot/Plant - 100 mM NaCl L
Leaf number TP-3*-Normal M
Table 23: Provided are the Sorghum correlated parameters. Cold conditions = 10 ± 2 °C; NaCl = 100 mM NaCl; low nitrogen = 1.2 mM Nitrogen; Normal conditions = 16 mM Nitrogen * TP-3 refers to time point 3.
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Table 24
Sorghum accessions, measured parameters
Seed ID F B L G E A H M I
20 3.67 0.35 0.66 14.63 3.88 0.83 1.03 4.17 0.81
22 3.88 1.45 2.43 16.31 4.16 0.95 1.34 4.48 1.89
26 4.28 1.49 2.40 20.56 4.52 1.47 1.71 4.93 2.51
27 4.03 0.81 1.61 14.70 4.28 1.06 1.28 4.53 1.26
28 3.97 1.03 1.77 16.43 4.33 0.71 1.12 4.52 1.55
29 3.98 0.95 1.66 16.12 4.17 1.38 1.69 4.64 1.50
30 3.90 2.00 2.23 15.61 3.94 2.04 2.24 4.49 1.93
31 4.18 1.39 2.76 18.71 4.26 1.03 1.26 4.79 1.95
34 3.70 1.29 1.29 13.65 4.20 1.01 1.08 4.37 1.48
37 3.82 1.76 1.55 15.72 4.04 1.01 1.02 4.54 1.85
Table 24: Provided are the measured parameters under 100 mM NaCl and low temperature (8-10 °C) conditions of Sorghum accessions (Seed ID) according to the Correlation ID numbers (described in Table 23 above) as follows: F [100 rnM NaCl: leaf Number]; B [100 mM NaCl: Root DW]; L [100 mM NaCl: Shoot DW]; G [100 rnM NaCl: Plant height]; E [low temperature: leaf Number]; A [low temperature: Root 10 DW]; H [low temperature: Shoot DW];; M [Normal: leaf Number]; I [Normal: Shoot DW],
Table 25
Correlation between the expression level of selected genes of some embodiments of 15 the invention in roots and the phenotypic performance under normal or abiotic stress conditions across Sorghum accessions
Gene Name Cluster Id Exp. Set Corr. Vec. R P
LYM263 sorghum) gb 161. crp| AI622410 5 G 0.705635 0.183016
LYM263 sorghum) gb 161. crp| AI622410 5 F 0.908761 0.032626
LYM263 sorghum) gb 161. crp| AI622410 8 I 0.836212 0.004969
LYM2 H8 sorghum|09vl|SB07G004285 1 A 0.73969 0.01447
LYM4H11 sorghum 09vl SB03G000920 2 B 0.83675 0.00491
LYM4H11 sorghum 09vl SB03G000920 2 B 0.73187 0.02499
LYM4H11 sorghum 09vl SB03G000920 4 E 0.70634 0.03342
LYM14 H43 sorghum09vl SB01G038730 1 A 0.71433 0.02029
LYM19 H12 sorghum 09vl SB05G009990 5 F 0.97628 0.00437
LYM19 H12 sorghum 09vl SB05G009990 5 G 0.88580 0.04552
LYM24H10 sorghum|09vl|SB03G044280 4 H 0.75256 0.01929
LYM24H10 sorghum|09vl|SB03G044280 4 H 0.74948 0.02008
LYM73 H8 sorghum|09vl|SB07G004300 5 F 0.97233 0.00550
LYM73 H8 sorghum|09vl|SB07G004300 5 F 0.92449 0.02462
LYM73 H8 sorghum|09vl|SB07G004300 4 E 0.73646 0.02364
LYM83 H12 sorghum|09vl|SB09G026370 2 F 0.70736 0.03305
LYM129 H4 sorghum|09vl|SB03G044510 1 E 0.72429 0.01784
LYM129 H4 sorghum|09vl|SB03G044510 2 F 0.72339 0.02761
LYM129 H4 sorghum|09vl|SB03G044510 6 I 0.71891 0.02907
LYM129 H4 sorghum|09vl|SB03G044510 6 I 0.71123 0.03168
LYM129 H4 sorghum|09vl|SB03G044510 2 F 0.70792 0.03285
LYM140 H27 sorghum|09vl|SB06G028990 2 G 0.80589 0.00873
LYM140 H27 sorghum|09vl|SB06G028990 2 F 0.78965 0.01136
LYM140 H27 sorghum|09vl|SB06G028990 6 I 0.71625 0.02996
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Gene Name Cluster Id Exp. Set Corr. Vec. R P
LYM153 H9 sorghum|09vl|SB10G003440 4 H 0.78966 0.01136
LYM153 H9 sorghum|09vl|SB10G003440 4 H 0.73143 0.02512
LYM153 H9 sorghum|09vl|SB10G003440 4 A 0.71026 0.03202
LYM115 HO sorghum|09vl|SB01G043900 2 F 0.74903 0.02019
LYM188H13 sorghum|09vl|SB01G007950 5 F 0.87882 0.04971
LYM203 H14 sorghum|09vl|SB04G005460 2 B 0.78001 0.01316
LYM217 H3 sorghum|09vl|SB01G043910 5 B 0.94269 0.01633
LYM217 H3 sorghum|09vl|SB01G043910 5 B 0.93691 0.01884
LYM228 Hl sorghum|09vl|SB09G006910 1 A 0.72334 0.01806
LYM232 H3 sorghum|09vl|SB02G000450 2 L 0.77653 0.01385
LYM232 H3 sorghum|09vl|SB02G000450 2 F 0.72326 0.02766
LYM240H12 sorghum|09vl ISB02G03 8240 4 H 0.76382 0.01659
LYM240H12 sorghum|09vl ISB02G03 8240 2 L 0.73895 0.02293
LYM251 Hl 06 sorghum|09vl | SB01G006180 5 F 0.95275 0.01224
LYM284 H24 sorghum|09vl|SB03G027960 6 M 0.76300 0.01677
LYM289 H53 sorghum 09vl SB10G002980 5 G 0.91500 0.02936
Table 25. Provided are the correlations (R) between the expression levels yield improving genes and their homologs in various tissues [Expression (Exp.) sets] and the phenotypic performance [yield, biomass, growth rate and/or vigor components (Correlation vector)] under abiotic stress conditions (salinity) or normal conditions across Sorghum accessions. Corr. Vec. = correlation vector as described hereinabove (Table 23).
EXAMPLE 7
GENE CLONING AND GENERATION OF BINARY VECTORS FOR PLANT EXPRESSION
To validate their role in improving oil content, plant yield, seed yield, biomass, fiber yield and/or quality, growth rate, ABST, NUE and/or vigor, selected genes were over-expressed in plants, as follows.
Cloning strategy
Genes listed in Examples 1-6 hereinabove were cloned into binary vectors for the generation of transgenic plants. For cloning, the full-length open reading frame (ORF) was first identified. In case of ORF-EST clusters and in some cases already published mRNA sequences were analyzed to identify the entire open reading frame by comparing the results of several translation algorithms to known proteins from other plant species. To clone the full-length cDNAs, reverse transcription (RT) followed by polymerase chain reaction (PCR; RT-PCR) was performed on total RNA extracted from leaves, flowers, siliques or other plant tissues, growing under normal conditions. Total RNA was extracted as described in Example 3 above. Production of cDNA and PCR amplification was performed using standard protocols described elsewhere (Sambrook
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J., E.F. Fritsch, and T. Maniatis. 1989. Molecular Cloning. A Laboratory Manual., 2nd Ed. Cold Spring Harbor Laboratory Press, New York.) which are well known to those skilled in the art. PCR products were purified using PCR purification kit (Qiagen). In case where the entire coding sequence was not found, RACE kit from Invitrogen (RACE = R apid A ccess to cDNA E nds) was used to access the full cDNA transcript of the gene from the RNA samples described above.
In case genomic DNA was cloned, as in the case of LYM122 (SEQ ID NO:3739) and LYM273 (SEQ ID NO:3738), the genes were amplified by direct PCR on genomic DNA extracted from leaf tissue using the DNAeasy kit (Qiagen Cat. No. 69104).
Usually, 2 sets of primers were synthesized for the amplification of each gene from a cDNA or a genomic sequence; an external set of primers and an internal set (nested PCR primers). When needed (e.g., when the first PCR reaction did not result in a satisfactory product for sequencing), an additional primer (or two) of the nested PCR primers were used. Table 26 below provides primers used for cloning of selected genes.
Table 26
The PCR primers used for cloning the genes of some embodiments of the invention into high copy vectors
Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM1 SalI,XbaI LYMI NF Sall (SEQ ID NO: 3740) AAAGTCGACAGTAGGCAATCATGTGTGAGG
LYMINRXbal (SEQ ID NO: 3741) AATTCTAGACTAAGCTAGAGAGCTCGACTAATGC
LYM10 Xhol,Kpnl LYM10 NF Xhol (SEQ ID NO: 3742) ATACTCGAGTCTCCAACCTTGCGAAGG
LYM10 EF Xhol (SEQ ID NO: 3743) ATACTCGAGAACCCGATCTCTCCAACC
LYM10 NR Kpnl (SEQ ID NO: 3744) TATGGTACCCCTGCGAATTCTTGCCTTAG
LYM10 ER Kpnl (SEQ ID NO: 3745) TATGGTACCTGACGCCACCCTCAACTC
LYM100 SalI,XbaI LYMIOO NF Sall (SEQ ID NO: 3746) AAAGTCGACAGGAAACCCTAACGAAGATACC
LYMIOO EF Sall (SEQ ID NO: 3747) AAAGTCGACGGAAACATACAGGTCGATTGAG
LYMIOO NR Xbal (SEQ ID NO: 3748) AAATCTAGAGGGAAAGTTTAGTAGCACCAAC
LYMIOO ER Xbal (SEQ ID NO: 3749) AAATCTAGAATATAACGTTAGAGCGGAGTGG
LYM102 BamHI.XhoI LYM102_NF_BamHI (SEQ ID NO: 3750) AAAGGATCCGAGCTGCTGATTGTGAGTCAAG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM102_NR_XhoI (SEQ ID NO: 3751) AAACTCGAGCTAGGACAGCACTTCAGATAAGACC
LYM103 BamHI,XhoI LYM103_NF_BamHI (SEQ ID NO: 3752) AAAGGATCCCGACCGAGTCAATCAATCC
LYM103_NR_XhoI (SEQ ID NO: 3753) AAACTCGAGAACAAGTATGACAGGCCAACTC
LYM105 BamHI,XhoI LYM105_NF_BamHI (SEQ ID NO: 3754) AAAGGATCCTAGCTAGCTTACTCCACAGTGC
LYM105_EF_BamHI (SEQ ID NO: 3755) AAAGGATCCAGCCACACGCTTAGCTTAGC
LYM105_NR_XhoI (SEQ ID NO: 3756) AAACTCGAGCGAGCAGAAATTAACAGCTAAC
LYM105_ER_XhoI (SEQ ID NO: 3757) AAACTCGAGACTACAGATCCAAAGCACGAAC
LYM106 SalI,XbaI LYM106_NF_SalI (SEQ ID NO: 3758) AAAGTCGACACTCAACGTAGTTCCTCACCTG
LYM106_NR_XbaI (SEQ ID NO: 3759) AAATCTAGAAAGCTTTAGTTCTAGCACACGAC
LYM107 BamHI,XhoI LYM107_NF_BamHI (SEQ ID NO: 3760) AAAGGATCCGTACTCCTATATTAGGCTCGCTC
LYM107_EF_BamHI (SEQ ID NO: 3761) AAAGGATCCCTGCGTACTCCTATATTAGGCTC
LYM107_NR_XhoI (SEQ ID NO: 3762) AAACTCGAGAATTTGGTATCAGAAACCTTGC
LYM107_ER_XhoI (SEQ ID NO: 3763) AATCTCGAGTGAATCACTCAGTGTGCATGAC
LYM109 Xhol, Stul LYM109_F2_XhoI (SEQ ID NO: 3764) AAACTCGAGCCCAGCGGACTCCTACTCTG
LYM109_F2_XhoI (SEQ ID NO: 3764) AAACTCGAGCCCAGCGGACTCCTACTCTG
LYM109_R2_StuI (SEQ ID NO: 3765) TTTAGGCCTTCACAGTCTTACAAGTCCGATTGCC
LYM109_R2_StuI (SEQ ID NO: 3765) TTTAGGCCTTCACAGTCTTACAAGTCCGATTGCC
LYM110 BamHI,XhoI LYMllO NF BamHI (SEQ ID NO: 3766) AAAGGATCCGAACCAAACCTCGGAGAAAC
LYMllONRXhoI (SEQ ID NO: 3767) AAACTCGAGACCATCACCTGTAATACAACTACC
LYM111 Xhol,Sad LYMlll NF XhoI (SEQ ID NO: 3768) AAACTCGAGGAATCTGGTTGCTCATCTCATC
LYM11 lEFXhoI (SEQ ID NO: 3769) AAACTCGAGCTTCACAACGGACGAGAGG
LYMlllNRSacI (SEQ ID NO: 3770) AAAGAGCTCATAATCGTTGGAACTTGGAATC
LYM11 l ER Sad (SEQ ID NO: 3771) AAAGAGCTCACAGCTTATCCCTACATGCTTC
LYM112 BamHI,XhoI LYM112_NF_BamHI (SEQ ID NO: 3772) AAAGGATCCTCAATTGAATCAGATGCTCCAC
LYM112_EF_BamHI (SEQ ID NO: 3773) AAAGGATCCATTCCTTTGACCGATTTCTTG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM112_NR_XhoI (SEQ ID NO: 3774) AAACTCGAGCTAATTAAGACAAATCAGTGGCACC
LYM112_ER_XhoI (SEQ ID NO: 3775) AAACTCGAGACAGAAGGTCGATGTTGATCTG
LYM113 SalI,XbaI LYM113_NF_SalI (SEQ ID NO: 3776) AAAGTCGACTTCTTGATCTAAATTTGGGTGG
LYM113_EF_SalI (SEQ ID NO: 3777) AAAGTCGACACTAGCTCTGCACTTTCCCTG
LYM113_NR_XbaI (SEQ ID NO: 3778) AAATCTAGAGATTCAAGTGCGTTGTCTGTC
LYM113_ER_XbaI (SEQ ID NO: 3779) AAATCTAGACTTGGTATTTACAGGACAATCG
LYM115 BamHI,XhoI LYM115_F_BamHI (SEQ ID NO: 3780) AAAGGATCCTCGCCGCAGATGGAAGTCT
LYM115_ER_XhoI (SEQ ID NO: 3781) TTTCTCGAGCAAACTCGTCTGGAGATGGG
LYM116 SalI,XbaI LYM116_EF_SalI (SEQ ID NO: 3782) AAAGTCGACTTGGCTCCGGATATCGCA
LYM116_ER_XbaI (SEQ ID NO: 3783) AAATCTAGAAGGCAGATGTTCATAACCACAC
LYM117 LYM117_F2_BamHI (SEQ ID NO: 3784) AAAGGATCCCGTCGTCAAGTGCTGGC
LYM117_R2_EcoRV (SEQ ID NO: 3785) AGTGATATCTCAATGTTTAGGGTCTCGGCATG
LYM119 SalI,XbaI LYM119_NF_SalI (SEQ ID NO: 3786) AAAGTCGACATCGAGTTGTTCGTCCGTC
LYM119_NR_XbaI (SEQ ID NO: 3787) AAATCTAGAACACCAAGCGTACATCTCAGAC
LYM12 XhoI,KpnI LYM12 EF Xhol (SEQ ID NO: 3788) TTACTCGAGTGCTTCTCTTCTTTCCTCTCTG
LYM12 ER Kpnl (SEQ ID NO: 3789) ATAGGTACCTCACAGCAAACTAACATGAACCG
LYM120 BamHI,XhoI LYM120_NF_BamHI (SEQ ID NO: 3790) AAAGGATCCGGAAGTCCGGAGTTGGAAG
LYM120_NR_XhoI (SEQ ID NO: 3791) AAACTCGAGCAGTCACTCACACGCTACTACG
LYM121 BamHI,XhoI LYM121_NF_BamHI (SEQ ID NO: 3792) AAAGGATCCACTGCTGACCAACTTCAGTGTC
LYM121_EF_BamHI (SEQ ID NO: 3793) AAAGGATCCGACAAGGCTATCACATCCAATC
LYM121_NR_XhoI (SEQ ID NO: 3794) AAACTCGAGTTCTAAAGAAACAATCACGCAC
LYM121_ER_XhoI (SEQ ID NO: 3795) AAACTCGAGAGCAGAAGAAACTAGGCATGTG
LYM122G LYM122_EF_BamHI (SEQ ID NO: 3796) AAAGGATCCTGCAGCCCTGACACACAAC
LYM122_ER_XhoI (SEQ ID NO: 3797) AAACTCGAGACCATCATGTAATACCCACCTC
LYM125 LYM125_EF_BamHI (SEQ ID NO: 3798) AAAGGATCCCTGTGCTTGGAGTAGACACGAG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM125_ER_KpnI (SEQ ID NO: 3799) AAAGGTACCGGAGAATTTGGATCAGTGCAG
LYM127 LYM127_F2_BamHI (SEQ ID NO: 3800) TTTGGATCCCTTCTTGCTGTCGAACACCAG
LYM127_R2_XhoI (SEQ ID NO: 3801) TTTCTCGAGGTCATGGGATTCTTGTCAGATACTAG
LYM128 BamHI,XhoI LYM128_NF_BamHI (SEQ ID NO: 3802) TTTGGATCCTTCACACCTCACCGAGCG
LYM128_EF_BamHI (SEQ ID NO: 3803) AAAGGATCCAACCCGTTCACACCTCACC
LYM128_NR_XhoI (SEQ ID NO: 3804) AAACTCGAGGATCACTTGACAATTACCGTGC
LYM128_ER_XhoI (SEQ ID NO: 3805) AAACTCGAGTATGCTGATATGCCAGGTTTAC
LYM129 SalI,XbaI LYM129_NF_SalI (SEQ ID NO: 3806) AAAGTCGACATTCAGTCTTGTCGGCTACATC
LYM129_EF_SalI (SEQ ID NO: 3807) AAAGTCGACTAGATCAGCCTCGATTCATCTC
LYM129_NR_XbaI (SEQ ID NO: 3808) AAATCTAGAGCTTAATCAGAAGAAACGAACC
LYM129_ER_XbaI (SEQ ID NO: 3809) AAATCTAGAAATTGCACAATACATGAACACG
LYM13 SalI,BamHI LYM13_NF_SalI (SEQ ID NO: 3810) AAAGTCGACCAAGCGGTAGGAGATGAGG
LYM13_NR_BamHI (SEQ ID NO: 3811) AAAGGATCCTTATAACAACTATTCCCGGTAAGC
LYM130 SalI,XbaI LYM130_NF_SalI (SEQ ID NO: 3812) AAAGTCGACAGAAATTAAGTTGCCGGAGAG
LYM130_NR_XbaI (SEQ ID NO: 3813) AAATCTAGAATGCAGATGAGAGCTCAAGATG
LYM131 SalI,XhoI LYM131_NF_SalI (SEQ ID NO: 3814) AAAGTCGACTCCCTACCCTAGTCGATCTCC
LYM131_EF_SalI (SEQ ID NO: 3815) AAAGTCGACGACTCGTCTCCTCGTTGCTC
LYM131_NF_SalI (SEQ ID NO: 3814) AAAGTCGACTCCCTACCCTAGTCGATCTCC
LYM131_ER_XhoI (SEQ ID NO: 3816) AAACTCGAGTATAACACAGGCATAAAGCAGC
LYM132 BamHI,XhoI LYM132_EF_BamHI (SEQ ID NO: 3817) AAAGGATCCATATTGGAATGCTTCTGTCGTC
LYM132_ER_XhoI (SEQ ID NO: 3818) AAACTCGAGTACACGATAATCACAAACCACG
LYM134 BamHI,XhoI LYM134_NF_BamHI (SEQ ID NO: 3819) AAAGGATCCATGGTGATTCGGTTGTTGTTAG
LYM134_EF_BamHI (SEQ ID NO: 3820) AAAGGATCCATCGTTGAATTGATGGTGATTC
LYM134_NR_XhoI (SEQ ID NO: 3821) AAACTCGAGTCATACGTCGAAGAACCAGAAC
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM134_ER_XhoI (SEQ ID NO: 3822) AAACTCGAGTGAAACTTTCGCCAACTACAC
LYM135 LYM135_NF_SalI (SEQ ID NO: 3823) AAAGTCGACTTCTGATCTGCTCAGCTAAAGG
LYM135_NR_Sad (SEQ ID NO: 3824) AAAGAGCTCCTGATGCACAAATATGGTAACG
LYM136 BamHI,KpnI LYM136_NF_BamHI (SEQ ID NO: 3825) AAAGGATCCCCGGTTCTATGTGTAGGAAGAG
LYM136_EF_BamHI (SEQ ID NO: 3826) AAAGGATCCCAGGATGAGTGTTGATCCATTC
LYM136_NR_KpnI (SEQ ID NO: 3827) AAAGGTACCGTCACAAACGCCTCAACATATC
LYM136_ER_KpnI (SEQ ID NO: 3828) AAAGGTACCTTCACCATATTGCTACGAAATC
LYM137 SalI,XbaI LYM137_NF_SalI (SEQ ID NO: 3829) AAAGTCGACAGTTCAAGAGGCTGTCCTGAG
LYM137_NR_XbaI (SEQ ID NO: 3830) AAATCTAGATCCAATAACATAAGAAACCACG
LYM138 Sall,Sad LYM138_EF_SalI (SEQ ID NO: 3831) AAAGTCGACAACGAACCACTCTTCTGCATC
LYM138_ER_Sad (SEQ ID NO: 3832) AAAGAGCTCGAAGCAACCTGGAAATAAACTC
LYM14 EcoRV,PstI LYM14_NF_EcoRV (SEQ ID NO: 3833) AAAGATATCCTCCTCAGATCCACCACCAC
LYM14_NR_PstI (SEQ ID NO: 3834) AATCTGCAGCTAAAATATTCAGGGCTTGTTG
LYM140 XhoI,Sad LYM140_F_XhoI (SEQ ID NO: 3835) AAACTCGAGCTCCAGCACACGGACGAG
LYM140_ER_Sad (SEQ ID NO: 3836) AAAGAGCTCTACGAGTACGAATTATTGCCAG
LYM141 LYM141_NF_BamHI (SEQ ID NO: 3837) AAAGGATCCACAAGCGTCTTCTTCGTCTTC
LYM141_NR_KpnI (SEQ ID NO: 3838) AAAGGTACCCCATGCCACCCTTACTATACTC
LYM142 Sall,Sad LYM142_NF_SalB (SEQ ID NO: 3839) TAAGTCGACCACACAGAGCACAGCACAGAG
LYM142_NR_SacB (SEQ ID NO: 3840) TGAGCTCTGAACATGCGACCGTATGC
LYM143 SalI,XbaI LYM143_NF_SalI (SEQ ID NO: 3841) AAAGTCGACCACTAGCGCACAGATCTCCTAC
LYM143_NR_XbaI (SEQ ID NO: 3842) AAATCTAGAAATAGTGTCCATGAGACGAACG
LYM144 SalI,EcoRV LYM144_NF_SalI (SEQ ID NO: 3843) AAAGTCGACACGACGAGGAGGAGGATG
LYM144_NR_EcoRV (SEQ ID NO: 3844) AATGATATCACGCATGGATTTCTTTAAGTTG
LYM145 BamHI,XhoI LYM145_F2_BamHI (SEQ ID NO: 3845) ATCGGATCCTAGCTTTGCCCAGTTTTGCT
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM145_F2_BamHI (SEQ ID NO: 3845) ATCGGATCCTAGCTTTGCCCAGTTTTGCT
LYM145_R2_XhoI (SEQ ID NO: 3846) TTTCTCGAGCTATGCAGTTTTAGCCTAAGGCAAG
LYM145_R2_XhoI (SEQ ID NO: 3846) TTTCTCGAGCTATGCAGTTTTAGCCTAAGGCAAG
LYM146 LYM146_F2_KpnI (SEQ ID NO: 3847) AAAGGTACCCGAGGTCGTCACGCACAG
LYM146_R2_KpnI (SEQ ID NO: 3848) AATGGTACCTGGGTGGTTAGACAGCAAGG
LYM147 SalI,XbaI LYM147_NF_SalI (SEQ ID NO: 3849) AAAGTCGACCTCTGGCGCTCTCCTATACTC
LYM147_EF_SalI (SEQ ID NO: 3850) AAAGTCGACAGTACGTGTACGTTTCAGGGAG
LYM147_NR_XbaI (SEQ ID NO: 3851) AAATCTAGAAGTACCACTAGCAGAAAGGCAG
LYM147_ER_XbaI (SEQ ID NO: 3852) AAATCTAGATGGCACCCAATACTAGTACCAC
LYM148 BamHI,XhoI LYM148_NF_BamHI (SEQ ID NO: 3853) AAAGGATCCCTTACCCTTCCCTGAGATCC
LYM148_NR_XhoI (SEQ ID NO: 3854) AAACTCGAGCTAACTACCAAAGTTCAAGCAGCTC
LYM149 SalI,XbaI LYM149_NF_SalI (SEQ ID NO: 3855) AAAGTCGACACCATGAGTTCATAACAAGAAGG
LYM149_NR_XbaI (SEQ ID NO: 3856) AAATCTAGACTAATACATGGAAGTGCAGACATGC
LYM15 SalI,XbaI LYM15_NF_SalI (SEQ ID NO: 3857) AAAGTCGACAGGTACAGTATAGTATGACACCGAC
LYM15_NR_XbaI (SEQ ID NO: 3858) AATTCTAGACTACTGTTAACCGCTGATTATATCC
LYM152 SalI,XbaI LYM152_NF_SalI (SEQ ID NO: 3859) TTTGTCGACGAAGAAGAGATGGGAGTTTTCTC
LYM152_NR_XbaI (SEQ ID NO: 3860) AAATCTAGAATTTCTGACATTACATTATAGTCTCG
LYM153 SalI,XbaI LYM153_NF_SalI (SEQ ID NO: 3861) AAAGTCGACTTCTCCTCCTACGTTCTACTGG
LYM153_NR_XbaI (SEQ ID NO: 3862) AAATCTAGACTAACAGGGTTTCTCCACTAAGTAAG
LYM155 SalI,XbaI LYM155_NF_SalI (SEQ ID NO: 3863) AAAGTCGACTCCACTATAAGCAACGCACC
LYM155_EF_SalI (SEQ ID NO: 3864) AAAGTCGACGAAGGAAACTCGGTGACACG
LYM155_NR_XbaI (SEQ ID NO: 3865) AAATCTAGAATGCCATGCTACTAAGAACCTAC
LYM155_ER_XbaI (SEQ ID NO: 3866) AAATCTAGATAAACATCTCATGCCATGCTAC
LYM156 Stul,Stul LYM156_NF_StuI (SEQ ID NO: 3867) TTTAGGCCTCAAGATCCGCAGAGATGATC
LYM156 NR Stul_2 (SEQ ID NO: 3868) AAAAGGCCTTTAAGTGCTTGCGTCGTTTTACAG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM157_G XbaI,SacI LYM157_EF_Xba_B (SEQ ID NO: 3869) AATCTAGACCTCGAGCCACCCACTTTC
LYM157_ER_Sac_B (SEQ ID NO: 3870) TGAGCTCTCACCTTCATCTTGTCTTCACTGGT
LYM159 SalI,XbaI LYM159_NF_SalI (SEQ ID NO: 3871) AAAGTCGACCTCTACCTTCTTCTTCGGTCAG
LYM159_NR_XbaI (SEQ ID NO: 3872) AAATCTAGAAGCTTAGCTAGGCCAACAATAC
LYM16 SalI,XbaI LYM16NF Sall (SEQ ID NO: 3873) CTAGTCGACAAGAAATTGGCACAGAAATGG
LYM16 NR Xbal (SEQ ID NO: 3874) TATTCTAGATCAAAGAGCCTAGTGAGCGTCTTC
LYM160 SalI,XbaI LYM160_F2_SalI (SEQ ID NO: 3875) AAAGTCGACAGGCCAGACCAAAACCATG
LYM160_F2_SalI (SEQ ID NO: 3875) AAAGTCGACAGGCCAGACCAAAACCATG
LYM160_NR_XbaI (SEQ ID NO: 3876) AAATCTAGAAGAGTAACATGGACACACGACC
LYM160_R2_XbaI (SEQ ID NO: 3877) AATTCTAGATCAGTACAAGAGCCAGATGTCTGA
LYM161 BamHI,XhoI LYM161_EF_BamHI (SEQ ID NO: 3878) AAAGGATCCGAGAGAGGAGCAAAGATTCACC
LYM161_ER_XhoI (SEQ ID NO: 3879) AAACTCGAGTACAGGATGGTTGGTCTTCTTC
LYM162 BamHI,XhoI LYM162_NF_BamHI (SEQ ID NO: 3880) TTTGGATCCGCATCTAAGCCGAATTGAAG
LYM162_NR_XhoI (SEQ ID NO: 3881) AAACTCGAGCTATTTCATGCTCAGTACCTGCAC
LYM164 SalI,XbaI LYM164_NF_SalI (SEQ ID NO: 3882) AAAGTCGACATCCAGATGCTTCACATTCTTG
LYM164_NR_XbaI (SEQ ID NO: 3883) AAATCTAGATCGAGTTTGACACGAACTTATG
LYM165 LYM165_F2_XhoI (SEQ ID NO: 3884) AAACTCGAGCTACTCCGATCGGATCCTGAC
LYM165_R2_SacI (SEQ ID NO: 3885) AAAGAGCTCAAACGACGCACGGTCTCAC
LYM17 SmaI,KpnI LYM17 NF X/Smal (SEQ ID NO: 3886) ATACCCGGGTCTCTCAAGATGGTGGTGCTG
LYM17 NR Kpnl (SEQ ID NO: 3887) TATGGTACCAAGGGCTTAGCAAATTCTTTC
LYM170 SalI,XbaI LYM170_NF_SalI (SEQ ID NO: 3888) AAAGTCGACATTCTTCGACCTCCTAAACTCC
LYM170_EF_SalI (SEQ ID NO: 3889) AAAGTCGACAGTCTCACACAGATCGCTTCAC
LYM170_NR_XbaI (SEQ ID NO: 3890) AAATCTAGACTACCAACTCAGAACCAGGATGAG
LYM170_ER_XbaI (SEQ ID NO: 3891) AAATCTAGACATACCTATAAGGCTATAACACTGC
LYM172 BamHI,XhoI LYM172_NF_BamHI (SEQ ID NO: 3892) AAAGGATCCCTCGTCTTCGTCTACTCCACC
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM172_EF_BamHI (SEQ ID NO: 3893) AAAGGATCCCCTCACTCGTAGTCTCGTCTTC
LYM172_NR_XhoI (SEQ ID NO: 3894) AAACTCGAGGGAGCTTTGGAGAATAACAAAC
LYM172_ER_XhoI (SEQ ID NO: 3895) AAACTCGAGCAACAGGTAACTCATTTCCACC
LYM173 BamHI,XhoI LYM173_NF_BamHI (SEQ ID NO: 3896) AAAGGATCCTCATCAGTTCCCTGTTCTTCAG
LYM173_NR_XhoI (SEQ ID NO: 3897) AAACTCGAGATGACTGGACTAAAGCAACCAC
LYM174 BamHI,KpnI LYM174_NF_BamHI (SEQ ID NO: 3898) AAAGGATCCCTCTTGCTAGGAGTAGCCTGC
LYM174_NR_KpnI (SEQ ID NO: 3899) AAAGGTACCTATTATCCTACATGCCACATGC
LYM175 SalI,XbaI LYM175_NF_SalI (SEQ ID NO: 3900) AAAGTCGACCACTCCCTCTTATAGCCCACC
LYM175_NR_XbaI (SEQ ID NO: 3901) AAATCTAGACTAAGTGTACAGTTCACGGCACG
LYM176 SalI,XbaI LYM176_NF_SalI (SEQ ID NO: 3902) AAAGTCGACTCTCGTTTCTCCTACCCTACAG
LYM176_NR_XbaI (SEQ ID NO: 3903) AAATCTAGACTAACAGTTTCCAGTCAAAGCTACAG
LYM178 SalI,XbaI LYM178_NF_SalI (SEQ ID NO: 3904) AAAGTCGACCTATCCATCCGCCACAAGAC
LYM178_NR_XbaI (SEQ ID NO: 3905) AAATCTAGAACACAAGACACCATTTCTGGAG
LYM179 SalI,XhoI LYM179_NF_SalI (SEQ ID NO: 3906) AAAGTCGACAGGATTTCTCTAGGATAGCAGC
LYM179_EF_SalI (SEQ ID NO: 3907) AAAGTCGACCTCAGTCGAGCGAGGATTTC
LYM179_NR_XhoI (SEQ ID NO: 3908) AAACTCGAGAAACAGAGCCTAACAGACATGG
LYM179_ER_XhoI (SEQ ID NO: 3909) AAACTCGAGGGGATGTTTAGACTGCTACAGG
LYM180 BamHI,XhoI LYM180_NF_BamHI (SEQ ID NO: 3910) TATGGATCCCGACCTTTGATACCAAGCAAG
LYM180_NR_XhoI (SEQ ID NO: 3911) TTACTCGAGCACGGATTAGTTTGTAGTAGCATGG
LYM181 LYM181_F2_BamHI (SEQ ID NO: 3912) AATGGATCCTAAAAATGGCGGCTGCTACTC
LYM181_R2_EcoRV (SEQ ID NO: 3913) TTTGATATCTCATACACGGTTTCATATGGTCGG
LYM183 LYM183_EF_SalI (SEQ ID NO: 3914) AAAGTCGACATCAAACCAACGAGAGCACTAC
LYM183_ER_XbaI (SEQ ID NO: 3915) AAATCTAGAACTTCAGTGTACTTTCCCTTGC
LYM184 LYM184_NF_BamHI (SEQ ID NO: 3916) AAAGGATCCAACACGACTTGTGAGTGAGAGC
LYM184_EF_BamHI (SEQ ID NO: 3917) AAAGGATCCATATGAGTAACGCCATCAGGAG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM184_NR_XhoI (SEQ ID NO: 3918) AAACTCGAGTGCCTCATTTAATCTTGGGTC
LYM184_ER_XhoI (SEQ ID NO: 3919) AAACTCGAGGAAATTGCCTCATTTAATCTTG
LYM185 BamHI,KpnI LYM185_NF_BamHI (SEQ ID NO: 3920) AAAGGATCCAATTCGAGATATTTGGCTGTTC
LYM185_EF_BamHI (SEQ ID NO: 3921) AAAGGATCCAGATAGCAAGATAGTCCGGTTG
LYM185_NR_KpnI (SEQ ID NO: 3922) AAAGGTACCGGTCTATCACAAGCATCCTCAC
LYM185_ER_KpnI (SEQ ID NO: 3923) AAAGGTACCACCACCTTTGTGATTGTTTCTC
LYM186 SalI,XbaI LYM186_NF_SalI (SEQ ID NO: 3924) AAAGTCGACCGACCCAAATTGACATAACTC
LYM186_NR_XbaI (SEQ ID NO: 3925) AAATCTAGAATAGCTGGAACCTGGTATTGAC
LYM188 BamHI,XhoI LYM188_EF_BamHI (SEQ ID NO: 3926) AAAGGATCCCGAGCTAGGGTTAGGGTTTC
LYM188_ER_XhoI (SEQ ID NO: 3927) AAACTCGAGCAACAACTCACGCTACACATTC
LYM189 SalI,XbaI LYM189_NF_SalI (SEQ ID NO: 3928) AAAGTCGACCCACGTCCTAGAATGAAAGAG
LYM189_EF_SalI (SEQ ID NO: 3929) AAAGTCGACTTCCTCTGCTTCCCACAGC
LYM189_NR_XbaI (SEQ ID NO: 3930) AAATCTAGACTGTTCATTCACGGTTGCAC
LYM189_ER_XbaI (SEQ ID NO: 3931) AAATCTAGAGCAAATCTGTCGCTTTATTAGG
LYM19 SalI,XbaI LYM19_NF_SalI (SEQ ID NO: 3932) AAAGTCGACGAGAGAAGAGAGATGGTCCTCC
LYM19_NR_XbaI (SEQ ID NO: 3933) AAATCTAGATTATCATGCTGACTTCTTGCCAC
LYM192 XhoI,EcoRV LYM192_EF_XhoI (SEQ ID NO: 3934) AAACTCGAGTGAGCAGCGAGCCCTAAC
LYM192_R_EcoRV (SEQ ID NO: 3935) TTTGATATCTCACACTACTAGGGAGTGGAGTAGTAA CTTGA
LYM193 BamHI,XhoI LYM193_NF_BamHI (SEQ ID NO: 3936) AAAGGATCCCTAGTAGTGTTCTTCCCATTCG
LYM193_EF_BamHI (SEQ ID NO: 3937) AAAGGATCCAACAATCCGTCCTTTCATTTG
LYM193_NR_XhoI (SEQ ID NO: 3938) AAACTCGAGTAAACGACAGCGGTACACATAC
LYM193_ER_XhoI (SEQ ID NO: 3939) AAACTCGAGTACATCTCTAGGCAGCAAACAG
LYM196 LYM196_NF_BamHI (SEQ ID NO: 3940) AAAGGATCCGAGGACACCGCTTGCTTTC
LYM196_NR_XhoI (SEQ ID NO: 3941) AAACTCGAGAACCTTGGATATGACCAATCAG
LYM197 BamHI,XhoI LYM197_EF_BamHI (SEQ ID NO: 3942) AAAGGATCCCTGTTGCCACATCTAGTGGTTC
163
2018271407 30 Nov 2018
Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM197_ER_XhoI (SEQ ID NO: 3943) AAACTCGAGCACAATTCAGCGATTATTTCAG
LYM198 BamHI,XhoI LYM198_F2_BamHI (SEQ ID NO: 3944) ATTGGATCCTTCATTTCCGCCATCCGT
LYM198_R2_XhoI (SEQ ID NO: 3945) AAACTCGAGCACCATCTCTTGCAGAAGGC
LYM2 EcoRV,Kpnl LYM2_NF_EcoRV (SEQ ID NO: 3946) AAAGATATCCGGTAGGTAGATGAAATTAAGG
LYM2_NR_KpnI (SEQ ID NO: 3947) CGAGGTACCCTAATATGCAGGTCAGCACACAAG
LYM20 EcoRV,Kpnl LYM20 NF EcoRV (SEQ ID NO: 3948) ATAGATATCACTCCGAATCCGACGCAC
LYM20 EF EcoRV (SEQ ID NO: 3949) ATAGATATCGAGATCCCAACTCCGAATCC
LYM20 NR Kpnl (SEQ ID NO: 3950) TATGGTACCCTACGTAAATCTCAGCACATGC
LYM20 ER Kpnl (SEQ ID NO: 3951) TATGGTACCCTTCTGCAACGTTATTTGAGG
LYM200 BamHI,XhoI LYM200_NF_BamHI (SEQ ID NO: 3952) AAAGGATCCACTTTACCGGGCTACCATTC
LYM200_EF_BamHI (SEQ ID NO: 3953) AAAGGATCCTTACAAGAGCCTGTGAGCTGAG
LYM200_NR_XhoI (SEQ ID NO: 3954) AAACTCGAGCTTATCTGGACCACACTTGGAC
LYM200_ER_XhoI (SEQ ID NO: 3955) AAACTCGAGAAGAAATACATAGCCCTCCTCC
LYM201 BamHI,XhoI LYM201_NF_BamHI (SEQ ID NO: 3956) AAAGGATCCGCCTCATCTCGGTTTACTATAAG
LYM201_NR_XhoI (SEQ ID NO: 3957) AAACTCGAGAAGTAGACACAAACCATCCTGG
LYM203 BamHI,XhoI LYM203_EF_BamHI (SEQ ID NO: 3958) AAAGGATCCTCTATCAAATCAGCCACCTGTC
LYM203_ER_XhoI (SEQ ID NO: 3959) AAACTCGAGCTAGCAACTTTGTAGACCAGACGTG
LYM204 LYM204_NF_BamHI (SEQ ID NO: 3960) AAAGGATCCCTACTACCAGACAGAGAGGACAGG
LYM204_EF_BamHI (SEQ ID NO: 3961) TTTGGATCCGCTTTCTGGCATCGCTACTAC
LYM204_NR_XhoI (SEQ ID NO: 3962) TGTCTCGAGTCAGTAGGAGTTTATGAGATGAACC
LYM204_ER_Xlio (SEQ ID NO: 3963) AAACTCGAGTCAACTCATCATCCGGAACATGGTAC
LYM206 Xhol,EcoRV LYM206_EF_XhoI (SEQ ID NO: 3964) AAACTCGAGAATTCTAGCAAGGCAGCTCAG
LYM206_ER_EcoRV (SEQ ID NO: 4199) AAAGATATCTAAAGGAGTCGTAGCCCTCTC
LYM207 LYM207_EF_BamHI (SEQ ID NO: 3966) AAAGGATCCACTCTTCCAACCGCTCCTC
LYM207_ER_KpnI (SEQ ID NO: 4200) AAAGGTACCCTAGTCTTGCGAAGTGCGAG
LYM208 BamHI,XhoI LYM208_F2_BamHI (SEQ ID NO: 3968) AAAGGATCCTGCGGCTGAGTACAGACGAC
164
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM208_R2_KpnI (SEQ ID NO: 3969) AAAGGTACCCATCAATCCATGCTAATGTAGAGC
LYM21 EcoRV,KpnI LYM21_NF_EcoRV (SEQ ID NO: 3970) AAAGATATCTCTCGCAGCACAAAGATGG
LYM21 NR Kpnl (SEQ ID NO: 3971) ATAGGTACCTCACCCTTAGTTCTTCACAGTGGTG
LYM212 SalI,XbaI LYM212_NF_SalI (SEQ ID NO: 3972) AAAGTCGACCTGATACCCATCCATCCACC
LYM212_EF_SalI (SEQ ID NO: 3973) AAAGTCGACACTGACAAACCGGACCCAC
LYM212_NR_XbaI (SEQ ID NO: 3974) AAATCTAGACTAGCAGAGCCGAAGTAGTACGAG
LYM212_ER_XbaI (SEQ ID NO: 3975) AAATCTAGACTAGAACGAAGTAGTACGAGCAAGC
LYM213 BamHI,XhoI LYM213_EF_BamHI (SEQ ID NO: 3976) AAAGGATCCCAGCTCATCAGAACACAGAAGG
LYM213_ER_XhoI (SEQ ID NO: 3977) AAACTCGAGTTCGACAATTTGCAATAGAAAG
LYM215 BamHI,XhoI LYM215_F2_BamHI (SEQ ID NO: 3978) AATGGATCCTTCCCTCCCACCGAAATG
LYM215_F2_BamHI (SEQ ID NO: 3978) AATGGATCCTTCCCTCCCACCGAAATG
LYM215_R2_XhoI (SEQ ID NO: 3979) AAACTCGAGGAGCATGCAAAATGGACTAGACT
LYM215_R2_XhoI (SEQ ID NO: 3979) AAACTCGAGGAGCATGCAAAATGGACTAGACT
LYM217 SalI,XbaI LYM217_F2_SalI (SEQ ID NO:4201 ) AAAGTCGACCGACCGATCCAAGTAGTGAGC
LYM217_R2_XbaI (SEQ ID NO:4202 ) AAATCTAGAAGCTGATAGGCCAGTCAATCC
LYM219 BamHI,KpnI LYM219_F_BamHI (SEQ ID NO: 3980) AAAGGATCCTAGCAGTCTCGATGGCCG
LYM219_F_BamHI (SEQ ID NO: 3980) AAAGGATCCTAGCAGTCTCGATGGCCG
LYM219_R_KpnI (SEQ ID NO: 3981) TTTGGTACCCGAGTCAGCTTTTGTAATGATAG
LYM219_R_KpnI (SEQ ID NO: 3981) TTTGGTACCCGAGTCAGCTTTTGTAATGATAG
LYM22 SalI,XbaI LYM22_NF_SalI (SEQ ID NO: 3982) AAAGTCGACTTAGCACACATGGCGTCTTC
LYM22_EF_SalI (SEQ ID NO: 3983) AAAGTCGACCATCGGCATCTTCCTAACTG
LYM22_NR_XbaI (SEQ ID NO: 3984) AATTCTAGATAATCTGTAGATGGCTGCCG
LYM22_ER_SmaI (SEQ ID NO: 3985) AATCCCGGGTAACAACGTACATGCAAGTCATC
LYM220 BamHI,EcoRV LYM220_NF_BamHI (SEQ ID NO: 3986) AAAGGATCCCGACTTCAAGCATCAGACTACC
165
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM220_EF_BamHI (SEQ ID NO: 3987) AAAGGATCCAGCACACACATCCTCTAAGTGC
LYM220_NR_EcoRV (SEQ ID NO: 3988) AAAGATATCAACAGCAGTCACTTCACTCGTC
LYM220_ER_EcoRV (SEQ ID NO: 3989) AAAGATATCAAGTGGTACGGCTGAGTGTAAC
LYM221 BamHI,XhoI LYM221_NF_BamHI (SEQ ID NO: 3990) AAAGGATCCACTGTCCACTGCGTCTGTCTC
LYM221_EF_BamHI (SEQ ID NO: 3991) AAAGGATCCATCGTTAGAGGCTCAGAGTCAG
LYM221_NR_XhoI (SEQ ID NO: 3992) AAACTCGAGACTACGTATTACACGGAGGTGG
LYM221_ER_XhoI (SEQ ID NO: 3993) AAACTCGAGTCTGCAGCATTCCTTAACCTAC
LYM223 XhoI,SacI LYM223_NF_XhoI (SEQ ID NO: 3994) AAACTCGAGACCTGCCTGCCACTATACTATC
LYM223_EF_XhoI (SEQ ID NO: 3995) AAACTCGAGAGACCCGTCTTAACTCTACCTG
LYM223_NR_SacI (SEQ ID NO: 3996) AAAGAGCTCAGCACCGGTTGATCTAGAATAC
LYM223_ER_SacI (SEQ ID NO: 3997) AAAGAGCTCATTTATCCACGAACCCATATTC
LYM224 BamHI,XhoI LYM224_EF_BamHI (SEQ ID NO: 3998) AAAGGATCCCAGGCCTCACGTGTCATTC
LYM224_EF_BamHI (SEQ ID NO: 3998) AAAGGATCCCAGGCCTCACGTGTCATTC
LYM224_R2_XhoI (SEQ ID NO: 3999) AAACTCGAGGTTTCCAGCCAACCAGAACAC
LYM224_ER_XhoI (SEQ ID NO: 4000) AAACTCGAGGATCCAAATTGGTAATGCTTTG
LYM228 LYM228_NF_BamHI (SEQ ID NO: 4001) AAAGGATCCGCAAGCACTCCACTTCAAGC
LYM228_F2_BamHI (SEQ ID NO: 4002) AAAGGATCCCTCGAAGTGTCCAAGAAGAACACA
LYM228_R2_KpnI (SEQ ID NO: 4003) TAAGGTACCGAGCTGCAAACATAACGTCGAG
LYM228_R2_KpnI (SEQ ID NO: 4003) TAAGGTACCGAGCTGCAAACATAACGTCGAG
LYM23 BamHI,KpnI LYM23_NF_BamHI (SEQ ID NO: 4004) AAAGGATCCTCATCTCTCTCCCTCTCATCG
LYM23_NR_KpnI (SEQ ID NO: 4005) AAAGGTACCGTGCTGCTTCAACTATCCTCTC
LYM232 LYM232_EF_BamHI (SEQ ID NO: 4006) AAAGGATCCAAATTCCCAATTTCTTCGGTC
LYM232_ER_XhoI (SEQ ID NO: 4007) AAACTCGAGAGCACACACAGGTTCCTAAGAG
LYM236 SalI,XbaI LYM236_F_SalI (SEQ ID NO: 4008) AAAGTCGACGACTACCAATCCAATCTCCTCC
LYM236_ER_XbaI (SEQ ID NO: 4009) AAATCTAGAAGAAATGTATAATCGAAGTGCATC
LYM238 LYM238_EF_SmaI (SEQ ID NO: 4010) AAACCCGGGTAGTGGTGGAGAGACGAAACAC
166
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM238_ER_SacI (SEQ ID NO: 4011) AAAGAGCTCCTACAAGTGCTGACTGCTGAAG
LYM239 BamHI,XhoI LYM239_EF_BamHI (SEQ ID NO: 4012) AAAGGATCCCTTGGTCCGTCTCCACTCTC
LYM239_R_XhoI (SEQ ID NO: 4013) AAACTCGAGCTAGGATTGGTACTCATTTCTTTGTG
LYM24 SalI,XbaI LYM24_NF_SalI (SEQ ID NO: 4014) AACGTCGACTCTTCTCTTTCTCTTCTCCTCG
LYM24_NR_XbaI (SEQ ID NO: 4015) ATATCTAGACATTCCAAACATTGTTATCAAAC
LYM240 BamHI,KpnI LYM240_NF_BamHI (SEQ ID NO: 4016) AAAGGATCCTACTGTAAGCAGTTTCCCACC
LYM240_EF_BamHI (SEQ ID NO: 4017) AAAGGATCCAACAACGCTCGTACTGTAAGC
LYM240_NR_KpnI (SEQ ID NO: 4018) AAAGGTACCACAAGTCATTCTACCAAGCACC
LYM240_ER_KpnI (SEQ ID NO: 4019) AAAGGTACCATACTTTCCTTGCTCTGCTGTC
LYM241 LYM241_NF_BamHI (SEQ ID NO: 4020) AAAGGATCCAAACGGTTGGGAGGTTAGC
LYM241_NR_XhoI (SEQ ID NO: 4021) AAACTCGAGACTGGATCAGATTGTGAAGGTG
LYM242 BamHI,XhoI LYM242_NF_BamHI (SEQ ID NO: 4022) AAAGGATCCACGACTCCGACGAGCGAC
LYM242_NR_XhoI (SEQ ID NO: 4023) AAACTCGAGAACTCAAGTGGACAAATGTTGC
LYM243 BamHI,XhoI LYM243_EF_BamHI (SEQ ID NO: 4024) AAAGGATCCAGAAGCGTAGAGCGGTCAAG
LYM243_ER_XhoI (SEQ ID NO: 4025) AAACTCGAGCATTAAGCGAATTAACCATGTG
LYM245 BamHI,KpnI LYM245_F_BamHI (SEQ ID NO: 4026) AAAGGATCCGCTAGCTACTAGCAAATTGAAGC
LYM245_F_BamHI (SEQ ID NO: 4026) AAAGGATCCGCTAGCTACTAGCAAATTGAAGC
LYM245_NR_KpnI (SEQ ID NO: 4027) AAAGGTACCGGTCACCCGTTAGACTTATGC
LYM245_ER_KpnI (SEQ ID NO: 4028) AAAGGTACCTGGTAAATTATGGGTATTCAGC
LYM248 BamHI,EcoRV LYM248_F_BamHI (SEQ ID NO: 4029) AAAGGATCCACCACCGCTCGTCTCCAC
LYM248_NR_EcoRV (SEQ ID NO: 4030) AAAGATATCACAAGAGAGATGGTGTGTCAGC
LYM249 LYM249_EF_BamHI (SEQ ID NO: 4031) AAAGGATCCGGGTGTCATCAAACGGACTAC
LYM249_ER_KpnI (SEQ ID NO: 4032) AAAGGTACCCTAAACGAGGTTACGGAATGTGTC
LYM250 SalI,XbaI LYM250_EF_SalI (SEQ ID NO: 4033) AAAGTCGACGGAATTGGTGAGGTGATGC
LYM250_ER_XbaI (SEQ ID NO: 4034) AAATCTAGACAGATAAACCTCAATCAAAGTCG
LYM251 LYM251_NF_SalI (SEQ ID NO: 4035) AAAGTCGACCTGTCCTCTACTACGCATCTCTC
167
2018271407 30 Nov 2018
Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM251_NR_XbaI (SEQ ID NO: 4036) AAATCTAGATAATCATCATTGTAGCAGGCAC
LYM252 BamHI,KpnI LYM252_NF_BamHI (SEQ ID NO: 4037) AAAGGATCCTAGGAAGGATGGTACTGGCTG
LYM252_EF_BamHI (SEQ ID NO: 4038) AAAGGATCCGCGATAGGAAGGATGGTACTG
LYM252_NR_KpnI (SEQ ID NO: 4039) AAAGGTACCAGGCAAACACAATGATTTCAAC
LYM252_ER_KpnI (SEQ ID NO: 4040) AAAGGTACCTGTAACATAAGTACCGGGCAG
LYM254 LYM254_EF_SalI (SEQ ID NO: 4041) AAAGTCGACAATCTCCCACGCTCCAAAG
LYM254_ER_XbaI (SEQ ID NO: 4042) AAATCTAGAAGTTACATTCTTGACCAGCAGC
LYM255 BamHI,XhoI LYM255_NF_BamHI (SEQ ID NO: 4043) AAAGGATCCCTTCTAGTAGCACAGTAGTAGCAGC
LYM255_NR_XhoI (SEQ ID NO: 4044) AAACTCGAGAACGAGGAAGAATCGGTATATG
LYM256 BamHI,XhoI LYM256_NF_BamHI (SEQ ID NO: 4045) AAAGGATCCGGAACAACTCGTAGCCATGAC
LYM256_EF_BamHI (SEQ ID NO: 4046) TATGGATCCCAATTTGAGAGCATTTGCTACG
LYM256_NR_XhoI (SEQ ID NO: 4047) TAACTCGAGCTGAACTTAATAGCAATTCCGTAGC
LYM256_ER_XhoI (SEQ ID NO: 4048) AAACTCGAGCGCACTACTGTGCTTCTGAAC
LYM26 SalI,XbaI LYM26_EF_SalI (SEQ ID NO: 4049) AAAGTCGACTTGCTCCCTCTCTCTCTCTTG
LYM26_ER_XbaI (SEQ ID NO: 4050) AAATCTAGATGTATTCACGAGGTAAACAACG
LYM260 LYM260_NF_BamHI (SEQ ID NO: 4051) AAAGGATCCGAGAGATTAATTAAGTGGCAGG
LYM260_EF_BamHI (SEQ ID NO: 4052) AAAGGATCCAGAAGAGAGATTAATTAAGTGGCAG
LYM260_NR_KpnI (SEQ ID NO: 4053) AAAGGTACCCTAATATCGATCCAAACTCACACAAG
LYM260_ER_KpnI (SEQ ID NO: 3965) AAAGGTACCTACGTGCGTATCATACATGGAG
LYM261 LYM261_EF_SmaI (SEQ ID NO: 4054) AATCCCGGGTCGAGAGGTTTCATTCAGTGC
LYM261_ER_KpnI (SEQ ID NO: 4055) TTTGGTACCTTATTACATTTGGATGGGCTGT
LYM267 SalI,EcoRV LYM267_F_SalI (SEQ ID NO: 4056) AAAGTCGACGAGCACAGGTAGGGTTTCG
LYM267_ER_EcoRV (SEQ ID NO: 4057) AAAGATATCCACTACCGAAGACTCACACGAC
LYM268 LYM268_EF_XhoI (SEQ ID NO: 4058) AAACTCGAGAACCCTCGCGAATCTGAG
LYM268_ER_EcoRV (SEQ ID NO: 4059) AAAGATATCTAGTTCTCCATTCAGCATCTCC
LYM270 BamHI,XhoI LYM270_NF_BamHI (SEQ ID NO: 4060) AAAGGATCCAAAGCAGTTCCAGCCTTCC
168
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM270_EF_BamHI (SEQ ID NO: 4061) AAAGGATCCACCAATGGCTGCCTGAGAC
LYM270_NF_BamHI (SEQ ID NO: 4060) AAAGGATCCAAAGCAGTTCCAGCCTTCC
LYM270_ER_XhoI (SEQ ID NO: 4062) AAACTCGAGGATTGGATATGCCACTTGATTG
LYM271 BamHI,XhoI LYM271_EF_BamHI (SEQ ID NO: 4063) AAAGGATCCCACCTTCTTCCCAGATCAATAG
LYM271_ER_XhoI (SEQ ID NO: 4064) AAACTCGAGGAAACAAAGCACAGTCAGTAGTAG
LYM273_S BamHI,XhoI LYM273_EF_BamHI (SEQ ID NO: 4065) AAAGGATCCTACTAACAAACAGATAATCTCCACG
LYM273_R2_XhoI (SEQ ID NO: 4066) ATACTCGAGAACATGTTGGAGATCTTTGATGC
LYM274 BamHI,XhoI LYM274_EF_BamHI (SEQ ID NO: 4067) AAAGGATCCGAGAAGCTCCACTCTTCTCCAC
LYM274_ER_XhoI (SEQ ID NO: 4068) AAACTCGAGTATAATGCACAGTTATGGGCAG
LYM277 LYM277_NF_SalI (SEQ ID NO: 4069) AAAGTCGACTCAACGCCCAAGCTAGATTAC
LYM277_NR_SacI (SEQ ID NO: 4070) AAAGAGCTCCTCAACATTGCAACAACTATGG
LYM278 Sall,Sad LYM278_EF_SalI (SEQ ID NO: 4071) AAAGTCGACGCAGCCACACAACACTATCTC
LYM278_ER_SacI (SEQ ID NO: 4072) AAAGAGCTCTTGACGATACATAGCACATAAGG
LYM283 LYM283_NF_SmaI (SEQ ID NO: 4073) TTTCCCGGGTGCCACTTGTGCGAGGAG
LYM283_R_KpnI (SEQ ID NO: 4074) AACGGTACCTCACCAATCAAAATGTACAATCATGT
LYM284 BamHI,KpnI LYM284_EF_BamHI (SEQ ID NO: 4075) AAAGGATCCGAGCAACCACCCGTAGTCAG
LYM284_ER_KpnI (SEQ ID NO: 4076) AAAGGTACCACAGCTCAAGTGCTCATTTCTC
LYM285 XhoI,EcoRV LYM285_NF_XhoI (SEQ ID NO: 4077) AAACTCGAGCCGCCATCTACTCGGAGC
LYM285_EF_XhoI (SEQ ID NO: 4078) AAACTCGAGCCTCCTCCGCCATCTACTC
LYM285_NR_EcoRV (SEQ ID NO: 4079) AAAGATATCAGAATTCACACTGTCCCAACAC
LYM285_ER_EcoRV (SEQ ID NO: 4080) AAAGATATCCAGTTATTATAGGCCTCGTTCC
LYM287 XhoI,EcoRV LYM287_EF_XhoI (SEQ ID NO: 4081) AAACTCGAGTGATTGCGTTTCCTTAAATATG
LYM287_ER_EcoRV (SEQ ID NO: 4082) AAAGATATCCAATCAATCCTACAAACACAGC
LYM288 Xhol,Sad LYM288_EF_XhoI (SEQ ID NO: 4083) AAACTCGAGTGTTAGGAAGTGAGGACTGAGC
LYM288_ER_SacI (SEQ ID NO: 4084) AAAGAGCTCGCTCAATTATTCACCATTTCATC
LYM289 SalI,XbaI LYM289_EF_SalI (SEQ ID NO: 4085) AAAGTCGACGCACAACCCTTGGAGACTTC
169
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM289_ER_XbaI (SEQ ID NO: 4086) AAATCTAGATCCTCTCATCGAGCTAAGACAC
LYM290 BamHI,KpnI LYM290_EF_BamHI (SEQ ID NO: 4087) AAAGGATCCATCCGGATCTCCACATTCC
LYM290_ER_KpnI (SEQ ID NO: 4088) AAAGGTACCGAAACAATCTCATGGTCTCTGC
LYM291 SalI,BamHI LYM291_EF_SalI (SEQ ID NO: 4089) AAAGTCGACACTGAGCTCTCTGCTAAGTTGG
LYM291_ER_BamHI (SEQ ID NO: 4090) AAAGGATCCTCCTAGCAACAGAAGATCCAAG
LYM293 XhoI,SacI LYM293_NF_XhoI (SEQ ID NO: 4091) AAACTCGAGAGCTTCCTCCCTAGCTGTCC
LYM293_EF_XhoI (SEQ ID NO: 4092) AAACTCGAGGTGTAGCTTCCTCCCTAGCTG
LYM293_NR_SacI (SEQ ID NO: 4093) AAAGAGCTCCTATTCCAGGAGAAGAACAATAAGAG
LYM293_ER_SacI (SEQ ID NO: 4094) AAAGAGCTCCTATTCATGTTCCAGGAGAAGAAC
LYM3 XhoI,KpnI LYM3_EF_XhoI (SEQ ID NO: 4095) AATCTCGAGATTTATCTGCTTCAATGGCAAC
LYM3_ER_KpnI (SEQ ID NO: 4096) ATAGGTACCCTAAGCATCATTCTGCCTACC
LYM30 SalI,XhoI LYM30_NF_SalI (SEQ ID NO: 4097) AAAGTCGACCCTCCATCCTTCAGTAATTGG
LYM30_NR_XhoI (SEQ ID NO: 4098) TTTCTCGAGTCAGTCTCCTTGGATGTTTGAGTTG
LYM31 SalI,XhoI LYM31_NF_SalI (SEQ ID NO: 4099) AAGGTCGACACTCCCAACGTCTACTCTTCC
LYM3 l EF Sall (SEQ ID NO: 4100) AATGTCGACCTCACCACTCCCAACGTCTAC
LYM3 INRXhoI (SEQ ID NO: 4101) AAACTCGAGATGTAAGAATGAAATCTTGTAGCTC
LYM3 lERXhoI (SEQ ID NO: 4102) AATCTCGAGTGCAAGGATGTAAGAATGAAATC
LYM34 BamHI,KpnI LYM34_NF_BamHI (SEQ ID NO: 4103) AAAGGATCCGAGATAATTAGCTCACTCCATGG
LYM34_NR_KpnI (SEQ ID NO: 4104) TATGGTACCGAATTGGGCCTATGAGACG
LYM35 SalI,XbaI LYM35_NF_SalI (SEQ ID NO: 4105) AAAGTCGACAACACCTCTCTGGCTCTCTCC
LYM35_NR_SacI (SEQ ID NO: 4106) AAAGAGCTCTCCTAAGACTTTCTCAGCCATC
LYM37 SalI,XbaI LYM37_NF_SalI (SEQ ID NO: 4203) AAAGTCGACAAAGTTAGCGACCAAGAAACC
LYM37_NR_XbaI (SEQ ID NO: 4204) AAATCTAGACATTTCTTTTGGATGGATGAAC
LYM4 EcoRV,KpnI LYM4_NF_EcoRV (SEQ ID NO: 4107) AAAGATATCACCTCGAAACCCTAGATCG
LYM4_EF_EcoRV (SEQ ID NO: 4108) AAAGATATCATTCCTCGACCAGCTCACG
LYM4_NR_Kpn (SEQ ID NO: 4109) TTAGGTACCACTCAAAGGAGAGCTTCAGCC
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM4 ER Kpnl (SEQ ID NO: 4110) TAAGGTACCGTTGGCATTCTTCAAACCAG
LYM40 LYM40_NF_SalI (SEQ ID NO: 4111) AAAGTCGACCTCGAGAGCTCAATGATTCG
LYM40_NR_XbaI (SEQ ID NO: 4112) AAATCTAGAACCAACCAATTAAAGGCTAATG
LYM41 SalI,XbaI LYM41_NF_SalI (SEQ ID NO: 4113) AAAGTCGACGATTGGTTGCTTGGGTTTG
LYM41_NR_XbaI (SEQ ID NO: 4114) AAATCTAGATGCTTTCTTTCAGAACATCTCC
LYM42 SalI,XbaI LYM42_NF_SalI (SEQ ID NO: 4115) AAAGTCGACAACCTCTCCTCCTCGTCACAC
LYM42_EF_SalI (SEQ ID NO: 4116) AAAGTCGACATCAAACCTCTCCTCCTCGTC
LYM42_NR_XbaI (SEQ ID NO: 4117) AATTCTAGATCACAGGAAGGAGGGGTAGTAACAG
LYM42_ER_XbaI (SEQ ID NO: 4118) AAATCTAGAATTTCCTGCTGTTCATTCAAAG
LYM43 SalI,XbaI LYM43_NF_SalI (SEQ ID NO: 4119) AAAGTCGACTCAGTGTTCTTCCATTCTTTCC
LYM43_NR_XbaI (SEQ ID NO: 4120) AAATCTAGATTGAATTAGCAGCAGCAAGAG
LYM44 SalI,XbaI LYM44_NF_SalI (SEQ ID NO: 4121) AAAGTCGACCGAACTAACTAACCATCTCATCC
LYM44_NR_XbaI (SEQ ID NO: 4122) AAATCTAGAATCGTTCGATTATTATTGCTCC
LYM5 EcoRV,PstI LYM5_EF_EcoRV (SEQ ID NO: 4123) AAAGATATCTCCTCTTCTCAAACTCCATCTC
LYM5_ER_PstI (SEQ ID NO: 4124) AATCTGCAGGGTCCTGTCATGCTGTGTAGTC
LYM51 SalI,XbaI LYM5 l EF Sall (SEQ ID NO: 4125) AAAGTCGACAATTCACCTCCCAAGCAGAG
LYM51_ER_XbaI (SEQ ID NO: 4126) AAATCTAGAATACAAGGCCTGCACTACCTAC
LYM52 EcoRV,XhoI LYM52_F_XhoI (SEQ ID NO: 4127) AAACTCGAGAAACCCGATAAGAAAATGGC
LYM52_ER_EcoRV (SEQ ID NO: 4128) TTTGATATCCTAGTGCCATACGTGCCTAACCT
LYM53 SalI,XbaI LYM53_NF_SalI (SEQ ID NO: 4129) AAAGTCGACATCCTCTCTTTCCACTCCTAGC
LYM53_NR_XbaI (SEQ ID NO: 4130) AAATCTAGATAGCACTCAGCTTAATTGGATG
LYM56 SalI,XbaI LYM56_F_SalI (SEQ ID NO: 4131) AAAGTCGACCTCGCTTGCCCACTCCTT
LYM56_F_SalI (SEQ ID NO: 4131) AAAGTCGACCTCGCTTGCCCACTCCTT
LYM56_NR_XbaI (SEQ ID NO: 4132) AAATCTAGACTAGCATGATCCTGGATGTTTACTC
LYM56_ER_XbaI (SEQ ID NO: 4133) AAATCTAGAAGCAGAGATAGGCATAAGTCCA
LYM57 EcoRV,XhoI LYM57_NF_EcoRV (SEQ ID NO: 4134) AAAGATATCACCACTAGGACTCAACGAGAAG
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM57_NR_XhoI (SEQ ID NO: 4135) AACCTCGAGAGTAACATCCGAACGTATACACC
LYM6 SmaI,KpnI LYM6_NF_X/SmaI (SEQ ID NO: 4136) ATACCCGGGAACCACGCGAAGACATGG
LYM6_NR_KpnI (SEQ ID NO: 4137) TATGGTACCGGATCAGGTTATACTTCTTATTGAC
LYM61 BamHI,XhoI LYM61_NF_BamHI (SEQ ID NO: 4138) AAAGGATCCAAGCCTGTTCTCTGTCGATTG
LYM61_NR_XhoI (SEQ ID NO: 4139) AAACTCGAGAATGCATGTCCTAGTCTTTACG
LYM62 BamHI,KpnI LYM62_NF_BamHI (SEQ ID NO: 4140) TTAGGATCCAACATTTACGCGATCCATTG
LYM62_EF_BamHI (SEQ ID NO: 4141) TTAGGATCCATCATCTGCTTTGTCTACCTCG
LYM62_NR_KpnI (SEQ ID NO: 4142) ATCGGTACCTCAACTGAATTCGCTGAAACTTGTC
LYM62_ER_KpnI (SEQ ID NO: 4143) AAAGGTACCGAAAACAAATGGAAGCAATCTG
LYM66 EcoRV,XhoI LYM66_NF_EcoRV (SEQ ID NO: 4144) AAAGATATCGAGACGCAAGAAACATAGCTC
LYM66_NR_XhoI (SEQ ID NO: 4145) AAACTCGAGCAATCACTGCTACAAATCCGT
LYM67 SalI,XbaI LYM67_NF_SalI (SEQ ID NO: 4146) TATGTCGACTCTTCTTCACTGAGGCAAGTTC
LYM67_NR_XbaI (SEQ ID NO: 4147) AAGTCTAGATCAAAGATCCATAACATTCCATGC
LYM68 SalI,XhoI LYM68_NF_SalI (SEQ ID NO: 4148) ATTGTCGACTTGAGATAAAGGCAAAATTACG
LYM68_EF_SalI (SEQ ID NO: 4149) TTTGTCGACGTCTCGTTTCAGATTCTTCTGC
LYM68_NR_XhoI (SEQ ID NO: 4150) TTCCTCGAGTCTCTAGAGTTGCATTCCTTCC
LYM68_ER_XhoI (SEQ ID NO: 4151) TGACTCGAGCATCGTTTACACTGAACCACTG
LYM69 SalI,XbaI LYM69_NF_SalI (SEQ ID NO: 4152) AAAGTCGACACCCAGGAACACATCATCATC
LYM69_NR_XbaI (SEQ ID NO: 4153) AAATCTAGAAGGACACGTCAAATGAGAAAAC
LYM7 SalI,XbaI LYM7_NF_SalI (SEQ ID NO: 4154) AAAGTCGACAGTCAGATCCATTCCTCCTCC
LYM7_NR_XbaI (SEQ ID NO: 4155) AATTCTAGAAAAAGTAGCAGCCGGTCATC
LYM73 LYM73_EF_SalI (SEQ ID NO: 4156) AACGTCGACAATCTTGACACCATCTCGCTC
LYM73_ER_StuI (SEQ ID NO: 4157) TTTAGGCCTCTCGCACATTATTTTGTACAGC
LYM79 SalI,XbaI LYM79_F_SalI (SEQ ID NO: 4158) AAAGTCGACGCGACAGAGAATCCATGGC
LYM79_F_SalI (SEQ ID NO: 4158) AAAGTCGACGCGACAGAGAATCCATGGC
LYM79_NR_XbaI (SEQ ID NO: 4159) AATTCTAGATCAAACTCCTCTTATATGCACCTGC
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM79_ER_XbaI (SEQ ID NO: 4160) AAATCTAGATCAGAAACTAACTCCTCTTATATGCAC C
LYM8 XhoI,KpnI LYM8 NF Xhol (SEQ ID NO: 4161) ATACTCGAGCTTCCCCGATAGAAATCCATC
LYM8 NR Kpnl (SEQ ID NO: 4162) TAGGGTACCACCAAACAGCACATATGCGG
LYM82 SalI,XbaI LYM82_EF_SalI (SEQ ID NO: 4163) AAAGTCGACCGCAACCGGAGAGAAATC
LYM82_ER_XbaI (SEQ ID NO: 4164) AAATCTAGATCGACAATCTTCATACACAACG
LYM83 LYM83_NF_BamHI (SEQ ID NO: 4165) AAAGGATCCCGACAGTCACCACTCACCAAC
LYM83_F2_BamHI (SEQ ID NO: 4166) AAAGGATCCTCCGCACGCAACTCAGTG
LYM83_R2_XhoI (SEQ ID NO: 4167) AAACTCGAGCAACGGTAACACACAAGCATTC
LYM83_R2_XhoI (SEQ ID NO: 4167) AAACTCGAGCAACGGTAACACACAAGCATTC
LYM84 BamHI,XhoI LYM84_NF_BamHI (SEQ ID NO: 4168) AAAGGATCCACCCAGAACCCGAAGAATG
LYM84_F2_BamHI (SEQ ID NO: 4169) AATGGATCCTAAACCCAGAACCCGAAGAATG
LYM84_R2_XhoI (SEQ ID NO: 4170) AAACTCGAGCAAACTGGAGCATAGCAACTAGG
LYM84_R2_XhoI (SEQ ID NO: 4170) AAACTCGAGCAAACTGGAGCATAGCAACTAGG
LYM86 BamHI,XhoI LYM86_EF_BamHI (SEQ ID NO: 4171) AAAGGATCCCACACACCACAGTCGCAATC
LYM86_ER_XhoI (SEQ ID NO: 4172) AAACTCGAGAGAATCGATGCAGGTAACTACG
LYM88 BamHI,XhoI LYM88_F_BamHI (SEQ ID NO: 4173) AAAGGATCCACAATAAACAAGATAAATGGAGG
LYM88_F_BamHI (SEQ ID NO: 4173) AAAGGATCCACAATAAACAAGATAAATGGAGG
LYM88_NR_XhoI (SEQ ID NO: 4174) AAACTCGAGTCACACGCAACTTCAGGTTC
LYM88_ER_XhoI (SEQ ID NO: 4175) AAACTCGAGCAAACCGAATTATTACATCAGG
LYM89 Sall,Sad LYM89_NF_SalI (SEQ ID NO: 4176) AAAGTCGACGGCCGACACATCTGATCTAAC
LYM89_NR_Sad (SEQ ID NO: 4177) AAAGAGCTCTCCCAGAAATATATAAGAACAAGC
LYM9 SalI,XbaI LYM9_NF_SalI (SEQ ID NO: 4178) AAAGTCGACAACTCCCCAACCAAGCAG
LYM9_NR_XbaI (SEQ ID NO: 4179) AAATCTAGATTAGTACTAAGAGTCGGCTTTGGC
LYM90 SalI,XbaI LYM90_NF_SalI (SEQ ID NO: 4180) AAAGTCGACCTAAACCCTAACCCTAGATTGG
LYM90_NR_XbaI (SEQ ID NO: 4181) AAATCTAGAAGACTTGGCTAATGCTAACCTG
LYM91 SalI,XbaI LYM91_F2_SalI (SEQ ID NO: 4182) TAAGTCGACCGTCTCTCAAGCTCGCAGC
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Gene Name Restriction Enzymes used for cloning Primers used for amplification
LYM91_F2_SalI (SEQ ID NO: 4182) TAAGTCGACCGTCTCTCAAGCTCGCAGC
LYM91_R2_XbaI (SEQ ID NO: 4183) ATTTCTAGACGAGAGCCTCTAATGGATCACAG
LYM91_R2_XbaI (SEQ ID NO: 4183) ATTTCTAGACGAGAGCCTCTAATGGATCACAG
LYM93 LYM93_EF_SalI (SEQ ID NO: 4184) AAAGTCGACATTGCACTGCATAGGGCTG
LYM93_ER_XbaI (SEQ ID NO: 4185) AAATCTAGACTAAGAGTTGAGCATGATAAATACGA C
LYM95 SalI,XbaI LYM95_NF_SalI (SEQ ID NO: 4186) ATAGTCGACGAGAAAGTGGAAGAGAACATGG
LYM95_EF_SalI (SEQ ID NO: 4187) AAAGTCGACCCGCTGGAGAAAGTGGAAG
LYM95_NR_XbaI (SEQ ID NO: 4188) AAATCTAGAGTCCACAGATCCATGTCAAATC
LYM95_ER_XbaI (SEQ ID NO: 4189) AAATCTAGAGTGAATTTGATTTATTGCCAAC
LYM99 BamHI,KpnI LYM99_NF_BamHI (SEQ ID NO: 4190) AAAGGATCCCCGACCACGGATTGATTC
LYM99_EF_BamHI (SEQ ID NO: 4191) AAAGGATCCTTGACTTGGGTGTCTGGTCC
LYM99_NR_KpnI (SEQ ID NO: 4192) AAAGGTACCGTGCCTATGTCTTCCTAGCATC
LYM99_ER_KpnI (SEQ ID NO: 4193) AAAGGTACCATATTTAGGCGCCAGTAAAGAC
Table 26. Provided are the PCR primers used for cloning the genes of some embodiments of the invention. Fwd = forward primer; Rev = reverse primer; Nested = nested primer for PCR (internal primer); External = external primer for PCR.
To facilitate cloning of the cDNAs/ genomic sequences, a 8-12 bp extension was added to the 5' of each primer. The primer extension includes an endonuclease restriction site. The restriction sites were selected using two parameters: (a). The site did not exist in the cDNA sequence; and (b). The restriction sites in the forward and reverse primers were designed such that the digested cDNA is inserted in the sense 10 formation into the binary vector utilized for transformation.
Each digested PCR product was inserted into a high copy vector pBlue-script KS plasmid vector [pBlue-script KS plasmid vector, Hypertext Transfer Protocol://World Wide Web (dot) stratagene (dot) com/manuals/212205 (dot) pdf] or into plasmids originating from this vector. In cases where the pGXN/ pGXNa high copy 15 vector (originated from pBlue-script KS) was used, the PCR product was inserted upstream to the NOS terminator (SEQ ID NO: 4194) originated from pBI 101.3 binary vector (GenBank Accession No. U12640, nucleotides 4356 to 4693) and downstream to
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174 the 35S promoter. The digested products and the linearized plasmid vector were ligated using T4 DNA ligase enzyme (Roche, Switzerland). In some cases PCR products were cloned without digestion into pCR-Blunt II-TOPO vector (Invitrogen).
Sequencing of the amplified PCR products was performed, using ABI 377 sequencer (Amersham Biosciences Inc). In all cases, after confirmation of the sequence of the cloned genes, the cloned cDNA accompanied or not with the NOS terminator was introduced into the modified pGI binary vector containing the 6669 promoter [pQFN or pQYN_6669] according to Table 27, via digestion with appropriate restriction endonucleases. In any case the insert was followed by single copy of the NOS terminator (SEQ ID NO:4194).
High copy plasmids containing the cloned genes were digested with restriction endonucleases (New England BioLabs Inc) and cloned into binary vectors according to Table 27, below.
Binary vectors used for cloning:
Evolution of binary vectors construction: The plasmid pPI was constructed by inserting a synthetic poly-(A) signal sequence, originating from pGL3 basic plasmid vector (Promega, Acc No U47295; bp 4658-4811) into the Hindlll restriction site of the binary vector pBI101.3 (Clontech, Acc. No. U12640). pGI (pBXYN) is similar to pPI, but the original gene in the backbone, the GUS gene, was replaced by the GUS-Intron gene followed by the NOS terminator (SEQ ID NO:4194) (Vancanneyt. G, et al MGG 220, 245-50, 1990). The modified pGI vector (pQXYN) is a modified version of the pGI vector in which the cassette is inverted between the left and right borders so the gene and its corresponding promoter are close to the right border and the NPTII gene is close to the left border.
Vectors used for cloning the polynucleotides of some embodiments of the invention: Cloned genes were digested from the high copy vectors and cloned into one of the following binary vectors: pQFN or pQYN_6669.
pQFN (see Figure 2) and pQYN_6669 (see Figure 1) are modified pGI vectors in which the 35S promoter was replaced by the new At6669 promoter (SEQ ID NO:4198). pQYN_6669 contains the GUSintron sequence, while pQFN lacks the GUSintron sequence
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175
Table 27
Restriction enzyme sites used to clone identified genes according to some embodiments of the invention into binary vectors
Gene name Binary vector Restriction enzymes used for cloning into binary vectorFORWARD Restriction enzymes used for cloning into binary vectorREVERSE Restriction enzymes used for digesting the binary vector
LYM1 pQFN Sall EcoRI Sall, EcoRI
LYM10 pQFN Xhol Kpnl Xhol, Kpnl
LYM100 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM102 pQFN BamHI Xhol BamHI, Xhol
LYM103 pQFN BamHI Xhol BamHI, Xhol
LYM105 pQFN BamHI Xhol BamHI, Xhol
LYM106 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM107 pQFN BamHI Xhol BamHI, Xhol
LYM109 pQFN Xhol Stul Xhol, Stul
LYM110 pQFN BamHI Xhol BamHI, Xhol
LYM111 pQFN Xhol EcoRI Xhol, EcoRI
LYM112 pQFN BamHI Xhol BamHI, Xhol
LYM113 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM115 pQFN BamHI Xhol BamHI, Xhol
LYM116 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM117 pQFN BamHI EcoRV BamHI, Stul
LYM118 pQFN BamHI Xhol BamHI, Xhol
LYM119 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM12 pQFN Xhol Kpnl Xhol, Kpnl
LYM120 pQFN BamHI Xhol BamHI, Xhol
LYM121 pQFN BamHI Xhol BamHI, Xhol
LYM122_ G pQFN BamHI Xhol BamHI, Xhol
LYM122 S pQFN BamHI Xhol BamHI, Xhol
LYM123 pQFN BamHI Xhol BamHI, Xhol
LYM125 pQFN BamHI Kpnl BamHI, Kpnl
LYM126 pQFN BamHI Kpnl BamHI, Kpnl
LYM127 pQFN BamHI Xhol BamHI, Xhol
LYM128 pQFN BamHI Xhol BamHI, Xhol
LYM129 pQFN Sall EcoRI Sall, EcoRI
LYM13 pQFN Sall BamHI Sall, BamHI
LYM130 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM131 pQFN Sall Xhol Sall, Xhol
LYM132 pQFN BamHI Xhol BamHI, Xhol
LYM134 pQFN BamHI Xhol BamHI, Xhol
LYM135 pQFN Sall Kpnl Sall, Kpnl
LYM136 pQFN BamHI Kpnl BamHI, Kpnl
LYM137 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM138 pQFN Sall Ecl 13611 Sall, Stul
LYM14 pQFN Sall BamHI Sall, BamHI
LYM140 pQFN Xhol EcoRI Xhol, EcoRI
LYM141 pQFN BamHI Kpnl BamHI, Kpnl
LYM142 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM143 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM144 pQFN Sall EcoRV Sall, Stul
LYM145 pQFN BamHI Xhol BamHI, Xhol
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Gene name Binary vector Restriction enzymes used for cloning into binary vectorFORWARD Restriction enzymes used for cloning into binary vectorREVERSE Restriction enzymes used for digesting the binary vector
LYM146 pQFN Kpnl Kpnl Kpnl, Kpnl
LYM147 pQFN Sall EcoRI Sall, EcoRI
LYM148 pQFN BamHI Xbal BamHI, Xhol
LYM149 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM15 pQFN Sall EcoRI Sall, EcoRI
LYM152 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM153 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM154 pQFN Xhol Stul Xhol, Stul
LYM155 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM156 pQFN Stul Stul Smal, Smal
LYM157_ G pQYN_6669 Sall EcoRI Sall, EcoRI
LYM157 S pQFN Sall Stul Sall, Stul
LYM159 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM16 pQFN Sall EcoRI Sall, EcoRI
LYM160 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM161 pQFN BamHI Xhol BamHI, Xhol
LYM162 pQFN BamHI Xhol BamHI, Xhol
LYM164 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM165 pQFN Xhol Ecl 13611 Xhol, Stul
LYM17 pQFN Smal Kpnl Smal, Kpnl
LYM170 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM172 pQFN BamHI Xhol BamHI, Xhol
LYM173 pQFN BamHI Xhol BamHI, Xhol
LYM174 pQFN BamHI Kpnl BamHI, Kpnl
LYM175 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM176 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM178 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM179 pQFN Sall Stul Sall, Stul
LYM180 pQFN BamHI Xhol BamHI, Xhol
LYM181 pQFN BamHI EcoRV BamHI, Stul
LYM183 pQFN Sall Xbal Sall, Stul
LYM184 pQFN BamHI Xhol BamHI, Xhol
LYM185 pQFN BamHI Kpnl BamHI, Kpnl
LYM186 pQFN Sall Ecl 13611 Sall, Stul
LYM188 pQFN BamHI Xhol BamHI, Xhol
LYM189 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM19 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM192 pQFN Xhol EcoRV Xhol, Stul
LYM193 pQFN BamHI Xhol BamHI, Xhol
LYM194 pQFN Sall Xhol Sall, Sall
LYM196 pQFN BamHI Xhol BamHI, Xhol
LYM197 pQFN BamHI Xhol BamHI, Xhol
LYM198 pQFN BamHI Xhol BamHI, Xhol
LYM2 pQFN EcoRV Kpnl Smal, Kpnl
LYM20 pQFN EcoRV Kpnl Smal, Kpnl
LYM200 pQFN BamHI Xhol BamHI, Xhol
LYM201 pQFN BamHI Xhol BamHI, Xhol
LYM203 pQFN BamHI Xhol BamHI, Xhol
LYM204 pQFN BamHI Xhol BamHI, Xhol
LYM206 pQFN Xhol EcoRV Xhol, Stul
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Gene name Binary vector Restriction enzymes used for cloning into binary vectorFORWARD Restriction enzymes used for cloning into binary vectorREVERSE Restriction enzymes used for digesting the binary vector
LYM207 pQFN BamHI Kpnl BamHI, Kpnl
LYM208 pQFN BamHI Kpnl BamHI, Kpnl
LYM21 pQFN EcoRV Kpnl Smal, Kpnl
LYM212 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM213 pQFN BamHI Xhol BamHI, Xhol
LYM215 pQFN BamHI Xhol BamHI, Xhol
LYM217 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM219 pQFN BamHI Kpnl BamHI, Kpnl
LYM22 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM220 pQFN BamHI EcoRV BamHI, Stul
LYM221 pQFN BamHI Xhol BamHI, Xhol
LYM223 pQFN Xhol EcoRI Xhol, EcoRI
LYM224 pQFN BamHI Xhol BamHI, Xhol
LYM227 pQFN BamHI Kpnl BamHI, Kpnl
LYM228 pQFN Stul Kpnl Kpnl, EcoRV
LYM23 pQFN BamHI Kpnl BamHI, Kpnl
LYM232 pQFN BamHI Xhol BamHI, Xhol
LYM233 pQFN BamHI Xhol BamHI, Xhol
LYM234 pQFN BamHI Xhol BamHI, Xhol
LYM236 pQFN Sall EcoRI Sall, EcoRI
LYM238 pQFN Smal Kpnl Smal, Kpnl
LYM239 pQFN BamHI Xhol BamHI, Xhol
LYM24 pQFN Sall EcoRI Sall, EcoRI
LYM240 pQFN BamHI Kpnl BamHI, Kpnl
LYM241 pQFN BamHI Xhol BamHI, Xhol
LYM242 pQFN BamHI Xhol BamHI, Xhol
LYM243 pQFN BamHI Xhol BamHI, Xhol
LYM245 pQFN BamHI Kpnl BamHI, Kpnl
LYM248 pQFN BamHI EcoRV BamHI, Stul
LYM249 pQFN BamHI Kpnl BamHI, Kpnl
LYM250 pQFN Sall Xbal Sall, Stul
LYM251 pQFN Sall Ecl 13611 Sall, Stul
LYM252 pQFN BamHI Kpnl BamHI, Kpnl
LYM254 pQFN Sall BamHI Sall, BamHI
LYM255 pQFN BamHI Xhol BamHI, Xhol
LYM256 pQFN BamHI Xhol BamHI, Xhol
LYM26 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM260 pQFN BamHI Kpnl BamHI, Kpnl
LYM261 pQFN Smal Kpnl Smal, Kpnl
LYM267 pQFN Sall EcoRV Sall, Stul
LYM268 pQFN Xhol EcoRV Xhol, Stul
LYM270 pQFN BamHI Xhol BamHI, Xhol
LYM271 pQFN BamHI Xhol BamHI, Xhol
LYM273_ G pQFN BamHI Xhol BamHI, Xhol
LYM273 S pQFN BamHI Xhol BamHI, Xhol
LYM274 pQFN BamHI Xhol BamHI, Xhol
LYM277 pQFN Sall Ecl 13611 Sall, Stul
LYM278 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM283 pQFN Smal Kpnl Smal, Kpnl
LYM284 pQFN BamHI Kpnl BamHI, Kpnl
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Gene name Binary vector Restriction enzymes used for cloning into binary vectorFORWARD Restriction enzymes used for cloning into binary vectorREVERSE Restriction enzymes used for digesting the binary vector
LYM285 pQFN Xhol EcoRV Xhol, Stul
LYM287 pQFN Xhol EcoRV Xhol, Stul
LYM288 pQFN Xhol EcoRI Xhol, EcoRI
LYM289 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM290 pQFN BamHI Kpnl BamHI, Kpnl
LYM291 pQFN Sall BamHI Sall, BamHI
LYM293 pQFN Xhol EcoRI Xhol, EcoRI
LYM3 pQFN Xhol Kpnl Xhol, Kpnl
LYM30 pQFN Sall Xhol Sall, Xhol
LYM31 pQFN Sall Xhol Sall, Xhol
LYM32 pQFN BamHI Kpnl BamHI, Kpnl
LYM34 pQFN BamHI Kpnl BamHI, Kpnl
LYM35 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM36 pQFN Stul Stul Stul, Stul
LYM37 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM38 pQFN Sall BamHI Sall, BamHI
LYM4 pQFN EcoRV Kpnl Smal, Kpnl
LYM40 pQFN Sall EcoRV Sall, Stul
LYM41 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM42 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM43 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM44 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM5 pQFN Sall BamHI Sall, BamHI
LYM51 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM52 pQFN Xhol EcoRV Xhol, Stul
LYM53 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM56 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM57 pQFN EcoRV Xhol Smal, Xhol
LYM6 pQFN Smal Kpnl Smal, Kpnl
LYM61 pQFN BamHI Xhol BamHI, Xhol
LYM62 pQFN BamHI Kpnl BamHI, Kpnl
LYM66 pQFN EcoRV Xhol Smal, Xhol
LYM67 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM68 pQFN Sall Xhol Sall, Xhol
LYM69 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM7 pQFN Sall EcoRI Sall, EcoRI
LYM73 pQFN Sall Stul Sall, Stul
LYM74 pQFN Sall Ecl 13611 Sall, Stul
LYM79 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM8 pQFN Xhol Kpnl Xhol, Kpnl
LYM82 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM83 pQFN BamHI Xhol BamHI, Xhol
LYM84 pQFN BamHI Xhol BamHI, Xhol
LYM86 pQFN BamHI Xhol BamHI, Xhol
LYM88 pQFN BamHI Xhol BamHI, Xhol
LYM89 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM9 pQFN Sall EcoRI Sall, EcoRI
LYM90 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM91 pQYN 6669 Sall EcoRI Sall, EcoRI
LYM93 pQFN Sall Xhol Sall, Xhol
LYM95 pQYN 6669 Sall EcoRI Sall, EcoRI
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Gene name Binary vector Restriction enzymes used for cloning into binary vectorFORWARD Restriction enzymes used for cloning into binary vectorREVERSE Restriction enzymes used for digesting the binary vector
LYM99 pQFN BamHI Kpnl BamHI, Kpnl
Table 27.
Table 28
Genes cloned from cDNA libraries or genomic DNA in a High copy number plasmid
Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM1 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3481 240
LYM10 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3490 249
LYM100 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgarc L. Manit cDNA 3542 301
LYM102 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3543 302
LYM103 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3544 3689
LYM105 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3545 3690
LYM106 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3546 305
LYM107 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3589 349
LYM109 pGXNa MAIZE Zea mays L. ND cDNA 3590 3702
LYM110 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3547 3691
LYM111 pGXNa MAIZE Zea mays L. Pioneer 30G54 cDNA 3548 307
LYM112 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3591 3703
LYM113 pGXN (pKG+Nos+35S) MAIZE Zea mays L. Pioneer 30G54 cDNA 3592 352
LYM115 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3593 3704
LYM116 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3594 354
LYM117 Topo B MAIZE Zea mays L. ND cDNA 3595 3705
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM118 GeneArt 3596 356
LYM119 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3549 3692
LYM12 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3491 250
LYM120 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3550 309
LYM121 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3597 357
LYM122G Topo B RICE Oryza sativa L. Japonica ND Genomic 3739 310
LYM122 S GeneArt 3551 310
LYM123 GeneArt 3598 358
LYM125 Topo B RICE Oryza sativa L. Japonica ND cDNA 3552 311
LYM126 GeneArt 3553 312
LYM127 Topo B RICE Oryza sativa L. Japonica ND cDNA 3554 313
LYM128 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3555 314
LYM129 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Indica ND+ RICE Oryza sativa L. Japonica ND cDNA 3556 315
LYM13 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3492 251
LYM130 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Indica ND cDNA 3557 316
LYM131 pGXNa RICE Oryza sativa L. Japonica ND cDNA 3558 3693
LYM132 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3559 318
LYM134 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3560 319
LYM135 Topo B RICE Oryza sativa L. Japonica ND cDNA 3599 359
LYM136 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3561 3694
181
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM137 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3562 321
LYM138 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3600 360
LYM14 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3493 252
LYM140 pGXNa BARLEY Hordeum vulgare L. Manit cDNA 3563 322
LYM141 Topo B RICE Oryza sativa L. Japonica ND cDNA 3564 323
LYM142 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3565 324
LYM143 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3566 325
LYM144 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3567 3695
LYM145 pKS(PksJ) RICE Oryza sativa L. ND cDNA 3568 327
LYM146 Topo B MAIZE Zea mays L. ND Genomic 3601 3706
LYM147 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3602 3707
LYM148 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3569 3696
LYM149 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3570 329
LYM15 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3494 253
LYM152 pGXN (pKG+Nos+35S) ARABIDOPSIS Arabidopsis thaliana Transgenic Columbia cDNA 3571 330
LYM153 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3572 331
LYM154 GeneArt 3603 363
LYM155 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3604 3708
LYM156 pGXNa BARLEY Hordeum vulgare L. Manit cDNA 3573 332
182
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM157_G pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3574 333
LYM157 S GeneArt 3574 333
LYM159 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3575 3697
LYM16 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3495 254
LYM160 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3576 3698
LYM161 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3577 3699
LYM162 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3578 337
LYM164 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3579 3700
LYM165 Topo B MAIZE Zea mays L. Pioneer 30G54 cDNA 3580 339
LYM17 pKS(PksJ) RICE Oryza sativa L. ND cDNA 3496 255
LYM170 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3581 341
LYM172 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3582 342
LYM173 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3583 343
LYM174 pKS(PksJ) SORGHUM Sorghum bicolor Monsanto S5 cDNA 3584 344
LYM175 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3585 345
LYM176 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3586 346
LYM178 pGXN (pKG+Nos+35S) ARABIDOPSIS Arabidopsis thaliana ND cDNA 3587 347
LYM179 pGXNa MAIZE Zea mays L. Pioneer 30G54 cDNA 3588 3701
LYM180 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3605 365
LYM181 Topo B BARLEY Hordeum vulgare L. Manit cDNA 3606 366
LYM183 Topo B BARLEY Hordeum vulgare L. Manit cDNA 3655 3733
183
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM184 Topo B BARLEY Hordeum vulgare L. Manit cDNA 3607 3709
LYM185 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3608 369
LYM186 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3609 3710
LYM188 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3610 371
LYM189 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3611 3711
LYM19 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3497 256
LYM192 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3612 3712
LYM193 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3613 374
LYM194 GeneArt 3614 3713
LYM196 Topo B MAIZE Zea mays L. ND cDNA 3615 376
LYM197 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3616 3714
LYM198 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3617 378
LYM2 pKS(PksJ) RICE Oryza sativa L. ND cDNA 3482 241
LYM20 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3498 257
LYM200 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3657 419
LYM201 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3618 379
LYM203 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3619 380
LYM204 Topo B MAIZE Zea mays L. Pioneer 30G54 cDNA 3620 381
LYM206 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3621 3715
LYM207 Topo B MAIZE Zea mays L. Pioneer 30G54 cDNA 3622 3716
LYM208 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3623 384
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM21 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3499 258
LYM212 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3624 3717
LYM213 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3625 386
LYM215 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3626 3718
LYM217 pGXN MAIZE Zea mays L. ND cDNA 3627 3719
LYM219 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3628 3720
LYM22 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3500 259
LYM220 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3629 3721
LYM221 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3630 3722
LYM223 pGXNa MAIZE Zea mays L. Pioneer 30G54 cDNA 3631 392
LYM224 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3632 3723
LYM227 GeneArt 3633 394
LYM228 Topo B MAIZE Zea mays L. Pioneer 30G54 cDNA 3634 3724
LYM23 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3501 260
LYM232 Topo B RICE Oryza sativa L. Japonica ND cDNA 3635 3725
LYM233 GeneArt 3636 397
LYM234 GeneArt 3637 398
LYM236 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3638 3726
LYM238 Topo B RICE Oryza sativa L. Japonica ND cDNA 3639 400
LYM239 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3640 3727
LYM24 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3502 261
185
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM240 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3641 402
LYM241 Topo B RICE Oryza sativa L. Japonica ND cDNA 3642 3728
LYM242 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3643 404
LYM243 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3644 405
LYM245 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3645 406
LYM248 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3646 3729
LYM249 Topo B RICE Oryza sativa L. Japonica ND+ RICE Oryza sativa L. ND cDNA 3647 3730
LYM250 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3648 409
LYM251 Topo B RICE Oryza sativa L. Japonica ND cDNA 3649 410
LYM252 pKS(PksJ) RICE Oryza sativa L. Indica ND+ RICE Oryza sativa L. Japonica ND cDNA 3650 411
LYM254 Topo B RICE Oryza sativa L. Japonica ND cDNA 3651 3731
LYM255 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3652 3732
LYM256 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3656 418
LYM26 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3503 262
LYM260 Topo B RICE Oryza sativa L. Japonica ND cDNA 3653 414
LYM261 Topo B RICE Oryza sativa L. Japonica ND cDNA 3654 415
LYM267 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3658 420
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM268 Topo B RICE Oryza sativa L. Indica ND+ RICE Oryza sativa L. Japonica ND cDNA 3659 421
LYM270 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3660 422
LYM271 pKS(PksJ) MAIZE Zea mays L. Pioneer 30G54 cDNA 3661 423
LYM273_G pKS(PksJ) RICE Oryza sativa L. Japonica ND Genomic 3738 425
LYM273 S GeneArt 3662 425
LYM274 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3663 3734
LYM277 Topo B RICE Oryza sativa L. Japonica ND cDNA 3664 3735
LYM278 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3665 3736
LYM283 Topo B RICE Oryza sativa L. ND cDNA 3666 429
LYM284 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3667 430
LYM285 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3668 431
LYM287 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3669 432
LYM288 pGXNa RICE Oryza sativa L. Indica ND+ RICE Oryza sativa L. Japonica ND cDNA 3670 3737
LYM289 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3671 434
LYM290 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3672 435
LYM291 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3673 436
LYM293 pGXNa RICE Oryza sativa L. Indica ND cDNA 3674 437
LYM3 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3483 3675
LYM30 pGXNa RICE Oryza sativa L. ND cDNA 3504 3677
187
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM31 pGXNa RICE Oryza sativa L. ND cDNA 3505 264
LYM32 GeneArt 3506 265
LYM34 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3507 3678
LYM35 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3508 267
LYM36 GeneArt 3509 268
LYM37 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3510 269
LYM38 GeneArt 3511 270
LYM4 pKS(PksJ) RICE Oryza sativa L. ND cDNA 3484 243
LYM40 Topo B RICE Oryza sativa L. Japonica ND cDNA 3512 271
LYM41 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3513 272
LYM42 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3514 273
LYM43 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3515 274
LYM44 pGXN (pKG+Nos+35S) RICE Oryza sativa L. Japonica ND cDNA 3516 275
LYM5 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3485 244
LYM51 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3517 3679
LYM52 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3518 277
LYM53 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3519 3680
LYM56 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3520 3681
LYM57 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3521 3682
LYM6 pKS(PksJ) RICE Oryza sativa L. ND cDNA 3486 3676
LYM61 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3522 3683
LYM62 pKS(PksJ) MAIZE Zea mays L. ND cDNA 3523 3684
LYM66 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3524 3685
188
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Gene Name High copy plasmid Amplified from Organism Origin Polynucleotide SEQ ID NO: Polypeptide SEQ ID NO:
LYM67 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3525 284
LYM68 pGXNa RICE Oryza sativa L. ND cDNA 3526 3686
LYM69 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3527 286
LYM7 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3487 246
LYM73 Topo B RICE Oryza sativa L. ND cDNA 3528 287
LYM74 GeneArt 3529 288
LYM79 pGXN (pKG+Nos+35S) MAIZE Zea mays L. ND cDNA 3530 3687
LYM8 pKS(PksJ) RICE Oryza sativa L. Japonica ND cDNA 3488 247
LYM82 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3531 290
LYM83 Topo B BARLEY Hordeum vulgare L. Manit cDNA 3532 3688
LYM84 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3533 292
LYM86 pKS(PksJ) RICE Oryza sativa L. Indica ND cDNA 3534 293
LYM88 pKS(PksJ) ARABIDOPSIS Arabidopsis thaliana Transgenic Columbia cDNA 3535 294
LYM89 pGXN (pKG+Nos+35S) ARABIDOPSIS Arabidopsis thaliana Transgenic Columbia cDNA 3536 295
LYM9 pGXN (pKG+Nos+35S) RICE Oryza sativa L. ND cDNA 3489 248
LYM90 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3537 296
LYM91 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3538 297
LYM93 Topo B BARLEY Hordeum vulgare L. Manit cDNA 3539 298
LYM95 pGXN (pKG+Nos+35S) BARLEY Hordeum vulgare L. Manit cDNA 3541 300
LYM99 pKS(PksJ) BARLEY Hordeum vulgare L. Manit cDNA 3540 299
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189
Table 28: Cloned and synthetic genes are provided along with the sequence identifiers of their polynucleotides and polypeptides. Also provided are the source organism, tissue and the cloning vectors. ND = not a determined ecotype.
Selected DNA sequences were synthesized by a commercial supplier GeneArt, GmbH [Hypertext Transfer Protocol://World Wide Web (dot) geneart (dot) com/)]. Synthetic DNA is designed in silico. Suitable restriction enzymes sites were added to the cloned sequences at the 5' end and at the 3' end to enabled later cloning into the pQFN/ pQYN_6669 binary vectors downstream of the 6669 promoter (SEQ ID NO:4198).
EXAMPLE 8 TRANSFORMING AGROBACTERIUM TUMEFACIENS CELLS WITH BINARY VECTORS HARBORING PUTATIVE GENES
Each of the binary vectors described in Example 7 above are used to transform Agrobacterium cells. Two additional binary constructs, having a GUS/Luciferase reporter gene replacing the selected gene (positioned downstream of the At6669 promoter), are used as negative controls.
The binary vectors are introduced to Agrobacterium tumefaciens GV301, or LB4404 competent cells (about 109 cells/mL) by electroporation. The electroporation is performed using a MicroPulser electroporator (Biorad), 0.2 cm cuvettes (Biorad) and EC-2 electroporation program (Biorad). The treated cells are cultured in LB liquid medium at 28 °C for 3 hours, then plated over LB agar supplemented with gentamycin (50 mg/L; for Agrobacterium strains GV301) or streptomycin (300 mg/L; for Agrobacterium strain LB4404) and kanamycin (50 mg/L) at 28 °C for 48 hours. Abrobacterium colonies which developed on the selective media are analyzed by PCR using the primers which are designed to span the inserted sequence in the pPI plasmid. The resulting PCR products are isolated and sequenced as described in Example 3 above, to verify that the correct yield sequences are properly introduced to the Agrobacterium cells.
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EXAMPLE 9
PRODUCING TRANSGENIC ARABIDOPSIS PLANTS EXPRESSING SELECTED GENES ACCORDING TO SOME EMBODIMENTS OF THE INVENTION
Materials and Experimental Methods
Plant transformation - The Arabidopsis thaliana var Columbia (To plants) were transformed according to the Floral Dip procedure [Clough SJ, Bent AF. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16(6): 735-43; and Desfeux C, Clough SJ, Bent AF. (2000) Female reproductive tissues are the primary targets of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method. Plant Physiol. 123(3): 895-904] with minor modifications. Briefly, Arabidopsis thaliana Columbia (ColO) To plants were sown in 250 ml pots filled with wet peat-based growth mix. The pots were covered with aluminum foil and a plastic dome, kept at 4 °C for 3-4 days, then uncovered and incubated in a growth chamber at 18-24 °C under 16/8 hours light/dark cycles. The To plants were ready for transformation six days before anthesis.
Single colonies of Agrobacterium carrying the binary vectors harboring the yield genes were cultured in LB medium supplemented with kanamycin (50 mg/L) and gentamycin (50 mg/L). The cultures were incubated at 28 °C for 48 hours under vigorous shaking and centrifuged at 4000 rpm for 5 minutes. The pellets comprising Agrobacterium cells were resuspended in a transformation medium which contained half-strength (2.15 g/L) Murashige-Skoog (Duchefa); 0.044 μΜ benzylamino purine (Sigma); 112 pg/L B5 Gambourg vitamins (Sigma); 5 % sucrose; and 0.2 ml/L Silwet L-77 (OSI Specialists, CT) in double-distilled water, at pH of 5.7.
Transformation of To plants was performed by inverting each plant into an Agrobacterium suspension such that the above ground plant tissue was submerged for 3-5 seconds. Each inoculated To plant was immediately placed in a plastic tray, then covered with clear plastic dome to maintain humidity and was kept in the dark at room temperature for 18 hours to facilitate infection and transformation. Transformed (transgenic) plants were then uncovered and transferred to a greenhouse for recovery and maturation. The transgenic To plants were grown in the greenhouse for 3-5 weeks until siliques were brown and dry, then seeds were harvested from plants and kept at room temperature until sowing.
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For generating Ti and T2 transgenic plants harboring the genes, seeds collected from transgenic To plants were surface-sterilized by soaking in 70 % ethanol for 1 minute, followed by soaking in 5 % sodium hypochlorite and 0.05 % triton for 5 minutes. The surface-sterilized seeds were thoroughly washed in sterile distilled water then placed on culture plates containing half-strength Murashig-Skoog (Duchefa); 2 % sucrose; 0.8 % plant agar; 50 rnM kanamycin; and 200 mM carbenicylin (Duchefa). The culture plates were incubated at 4 °C for 48 hours then transferred to a growth room at 25 °C for an additional week of incubation. Vital Ti Arabidopsis plants were transferred to a fresh culture plates for another week of incubation. Following incubation the Ti plants were removed from culture plates and planted in growth mix contained in 250 ml pots. The transgenic plants were allowed to grow in a greenhouse to maturity. Seeds harvested from Ti plants were cultured and grown to maturity as T2 plants under the same conditions as used for culturing and growing the Ti plants.
EXAMPLE 10
IMPROVED TRANSGENIC PLANT PERFORMANCE - GREENHOUSE ASS A YS
To analyze the effect of expression of the isolated polynucleotides in plants, plants performance was tested under greenhouse conditions.
Greenhouse assays - The plants were analyzed for their overall size, growth rate, flowering, seed yield, weight of 1,000 seeds, dry matter and harvest index (HIseed yield/dry matter). Transgenic plants performance was compared to control plants grown in parallel under the same conditions. Mock- transgenic plants expressing the uidA reporter gene (GUS-Intron) or with no gene at all, under the same promoter were used as control.
The experiment was planned in nested randomized plot distribution. For each gene of the invention three to five independent transformation events were analyzed from each construct. In cases where a certain event appears more than once, the event was tested in several independent experiments.
Tables 29 and 31 specify the parameters measured in plants in the greenhouse assays (till seed maturation and bolting assay, respectively).
Digital imaging - A laboratory image acquisition system, which consists of a digital reflex camera (Canon EOS 300D) attached with a 55 mm focal length lens
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192 (Canon EF-S series), mounted on a reproduction device (Kaiser RS), which included 4 light units (4 x 150 Watts light bulb) is used for capturing images of plant samples.
The image capturing process was repeated every 2 days starting from day 1 after transplanting till day 16. Same camera, placed in a custom made iron mount, was used for capturing images of larger plants sawn in white tubs in an environmental controlled greenhouse. The tubs were square shape include 1.7 liter trays. During the capture process, the tubs were placed beneath the iron mount, while avoiding direct sun light and casting of shadows.
An image analysis system was used, which consists of a personal desktop computer (Intel P4 3.0 GHz processor) and a public domain program - Image J 1.39 (Java based image processing program which was developed at the U.S National Institutes of Health and freely available on the internet at Hypertext Transfer Protocol://rsbweb (dot) nih (dot) gov/). Images were captured in resolution of 10 Mega Pixels (3888 x 2592 pixels) and stored in a low compression JPEG (Joint Photographic Experts Group standard) format. Next, analyzed data was saved to text files and processed using the JMP statistical analysis software (SAS institute).
Leaf growth analysis - Using the digital analysis leaves data was calculated, including leaf number, rosette area, rosette diameter, leaf blade area, plot coverage, leaf petiole length.
The vegetative growth rate of the plant was defined by formulas XIII, XIV, XV and XVI.
Formula XIII:
Relative growth rate of leaf blade area = Regression coefficient of leaf area along time course.
Formula XIV:
Relative growth rate of rosette area = Regression coefficient of rosette area along time course.
Formula XV
Relative growth rate of rosette diameter = Regression coefficient of rosette diameter along time course.
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Formula XVI
Relative growth rate of plot coverage = Regression coefficient of plot coverage along time course.
Seeds average weight (Seed weight or 1000 seed weight) - At the end of the experiment all seeds were collected. The seeds were scattered on a glass tray and a picture was taken. Using the digital analysis, the number of seeds in each sample was calculated.
Plant dry weight and seed yield - On about day 80 from sowing, the plants were harvested and left to dry at 30 °C in a drying chamber. The biomass and seed weight of each plot were measured and divided by the number of plants in each plot. Dry weight = total weight of the vegetative portion above ground (excluding roots) after drying at 30 °C in a drying chamber;
Seed yield per plant = total seed weight per plant (gr.).
1000 seed weight (the weight of 1000 seeds) (gr.).
The harvest index was calculated using Formula IV (Harvest Index = Average seed yield per plant/ Average dry weight) as described above.
Oil percentage in seeds - At the end of the experiment all seeds from plots A-C were collected. Columbia seeds from 3 plots were mixed grounded and then mounted onto the extraction chamber. 210 ml of n-Hexane (Cat No. 080951 Biolab Ltd.) were used as the solvent. The extraction was performed for 30 hours at medium heat 50 °C. Once the extraction has ended the n-Hexane was evaporated using the evaporator at 35 °C and vacuum conditions. The process was repeated twice. The information gained from the Soxhlet extractor (Soxhlet, F. Die gewichtsanalytische Bestimmung des Milchfettes, Polytechnisches J. (Dingier's) 1879, 232, 461) was used to create a calibration curve for the Low Resonance NMR. The content of oil of all seed samples was determined using the Low Resonance NMR (MARAN Ultra- Oxford Instrument) and its MultiQuant sowftware package.
Oil yield - The oil yield was calculated using Formula IX (described above).
Silique length analysis - On day 50 from sowing, 30 siliques from different plants in each plot were sampled in block A. The chosen siliques were green-yellow in color and were collected from the bottom parts of a grown plant’s stem. A digital photograph was taken to determine silique’s length.
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Statistical analyses - To identify genes conferring significantly improved tolerance to abiotic stresses, the results obtained from the transgenic plants were compared to those obtained from control plants. To identify outperforming genes and constructs, results from the independent transformation events tested were analyzed separately. Data was analyzed using Student's t-test and results were considered significant if the p value was less than 0.1. The JMP statistics software package was used (Version 5.2.1, SAS Institute Inc., Cary, NC, USA).
Experimental Results
Plants expressing the polynucleotides of the some embodiments of the invention 10 were assayed for a number of commercially desired traits. In cases where a certain event appears more than once, the event was tested in several independent experiments.
Table 29
Measured parameters at the greenhouse till seed maturation assay (T2 experiment) for transformed agriculture improving trait genes
Tested Parameters Id
Dry Weight (gr) A
Harvest Index B
Leaf Blade Area TP4 (cm2) C
Leaf Number TP4 D
Leaf Petiole Length TP4 (cm) E
Petiole Relative Area TP4 F
Plot Coverage TP4 (cm2) G
RGR Of Leaf Blade Area H
RGR Of Plot Coverage I
RGR Of Rosette Area J
RGR Of Rosette Diameter K
Rosette Area TP4 (cm2) L
Rosette Diameter TP4 (cm) M
Seed Yield (gr) N
Seeds Weight (gr) O
Blade Relative Area TP4 P
Oil Content Q
RGR Of Leaf Number R
Table 29: Provided are the identification (ID) letters of each of t ie Tested
Parameters. RGR-Relative Growth Rate; TP4- time point 4.
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Table 30
Results obtained in a Greenhouse till seed maturation assay
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 16 1162 3.2 A 0.739 2.97E -02 10.4 LYM 9 1163 3.7 P 93.11 5 4.23E -03 3.2
LYM 57 1201 2.6 A 0.841 4.23E -02 25.7 LYM 15 1161 1.3 P 93.13 1 5.66E -03 3.2
LYM 17 1168 1.4 A 0.728 5.16E -02 8.8 LYM 4 1170 2.1 P 93.16 7 7.54E -03 3.2
LYM 10 1174 4.1 A 0.723 8.27E -02 8 LYM 17 1168 2.3 P 92.74 7 8.70E -03 2.8
LYM 95 1212 1.3 A 0.779 9.81E -02 16.5 LYM 17 1168 4.5 P 92.55 4 1.28E -02 2.6
CON TRO L A 0.669 0 LYM 2 1169 1.2 P 92.87 5 1.35E -02 2.9
LYM 16 1162 3.5 B 0.543 6.50E -05 45.1 LYM 7 1159 4.3 P 92.51 3 1.79E -02 2.5
LYM 24 1206 3.3 B 0.515 2.78E -04 37.6 LYM 67 1178 2.5 P 94.03 7 1.83E -02 4.2
LYM 10 1174 1.4 B 0.499 3.74E -04 33.4 LYM 44 1188 4.3 P 92.30 6 2.09E -02 2.3
LYM 7 1159 4.2 B 0.498 1.10E -03 33.1 LYM 62 1202 2.4 P 92.29 6 2.21E -02 2.3
LYM 44 1188 5.3 B 0.473 1.50E -03 26.6 LYM 19 1175 1.4 P 92.24 4 2.38E -02 2.2
LYM 15 1161 1.3 B 0.477 3.91E -03 27.7 LYM 17 1168 4.4 P 92.43 8 3.04E -02 2.4
LYM 2 1169 5.1 B 0.457 4.23E -03 22.2 LYM 31 1192 3.1 P 92.39 9 3.32E -02 2.4
LYM 30 1191 3.3 B 0.462 4.25E -03 23.6 LYM 34 1190 3.3 P 92.07 3.49E -02 2
LYM 8 1198 4.1 B 0.472 4.44E -03 26.3 LYM 12 1187 1.3 P 91.99 9 3.94E -02 2
LYM 31 1192 3.1 B 0.471 4.64E -03 26 LYM 15 1161 4.3 P 91.99 6 5.05E -02 1.9
LYM 14 1205 1.1 B 0.454 5.37E -03 21.5 LYM 15 1161 4.4 P 91.87 7 5.09E -02 1.8
LYM 2 1169 2.3 B 0.546 5.62E -03 46 LYM 10 1174 1.4 P 91.97 9 5.99E -02 1.9
LYM 16 1162 4.6 B 0.468 8.76E -03 25.1 LYM 57 1201 2.4 P 91.75 2 6.64E -02 1.7
LYM 66 1195 4.4 B 0.455 9.16E -03 21.7 LYM 24 1206 3.3 P 92.88 3 6.73E -02 2.9
LYM 34 1190 4.3 B 0.442 1.11E -02 18.3 LYM 16 1162 4.6 P 91.72 3 7.65E -02 1.6
LYM 53 1184 3.2 B 0.506 1.24E -02 35.4 LYM 26 1182 4.3 P 91.67 2 7.95E -02 1.6
LYM 35 1181 2.4 B 0.446 1.49E -02 19.2 LYM 66 1195 5.2 P 91.69 3 8.09E -02 1.6
LYM 4 1170 6.5 B 0.456 1.57E -02 21.9 LYM 62 1202 3.7 P 92.17 8.37E -02 2.1
196
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 15 1161 2.2 B 0.437 1.59E -02 16.9 LYM 30 1191 3.3 P 91.63 7 8.66E -02 1.5
LYM 19 1175 4.1 B 0.448 1.60E -02 19.8 LYM 12 1187 3.4 P 91.84 9.17E -02 1.8
LYM 9 1163 4.6 B 0.466 1.61E -02 24.6 LYM 51 1189 1.1 P 92.63 9.56E -02 2.6
LYM 1 1160 1.1 B 0.465 1.63E -02 24.3 CON TRO L P 90.23 9 0
LYM 57 1201 3.1 B 0.429 3.09E -02 14.8 LYM 17 1168 4.5 Q 31.92 5 1.22E -04 13.3
LYM 17 1168 4.5 B 0.501 3.38E -02 34.1 LYM 66 1195 2.1 Q 31.76 1.43E -04 12.7
LYM 30 1191 2.6 B 0.506 3.67E -02 35.3 LYM 34 1190 4.3 Q 31.58 5 2.06E -04 12.1
LYM 24 1206 1.2 B 0.481 4.69E -02 28.5 LYM 17 1168 2.3 Q 32.16 2.39E -04 14.1
LYM 82 1220 3.2 B 0.53 4.78E -02 41.7 LYM 82 1220 3.2 Q 31.18 5 4.56E -04 10.7
LYM 31 1192 4.4 B 0.437 4.78E -02 16.7 LYM 2 1169 2.3 Q 31.17 7.38E -04 10.6
LYM 6 1173 5.1 B 0.42 5.60E -02 12.3 LYM 14 1205 1.1 Q 30.42 5 2.85E -03 8
LYM 8 1198 3.1 B 0.47 6.47E -02 25.8 LYM 43 1179 1.2 Q 31.01 5 3.17E -03 10.1
LYM 6 1173 4.3 B 0.418 6.56E -02 11.9 LYM 43 1179 3.2 Q 31.92 4.77E -03 13.3
LYM 30 1191 2.7 B 0.512 6.75E -02 36.9 LYM 26 1182 4.3 Q 30.13 5.77E -03 6.9
LYM 26 1182 4.3 B 0.483 6.80E -02 29.2 LYM 51 1189 3.4 Q 30.12 7.02E -03 6.9
LYM 8 1198 2.4 B 0.475 7.82E -02 27.1 LYM 10 1174 1.4 Q 30.01 8.17E -03 6.5
LYM 12 1187 1.1 B 0.457 8.07E -02 22.2 LYM 22 1176 1.3 Q 30.89 5 8.20E -03 9.6
LYM 67 1178 2.6 B 0.49 8.15E -02 31.1 LYM 15 1161 1.3 Q 30.05 8.49E -03 6.6
LYM 22 1176 4.1 B 0.474 8.22E -02 26.8 LYM 24 1206 3.3 Q 30.21 5 1.03E -02 7.2
LYM 51 1189 3.4 B 0.476 8.62E -02 27.4 LYM 43 1179 2.2 Q 29.98 5 1.19E -02 6.4
LYM 21 1167 4.5 B 0.516 8.83E -02 38 LYM 62 1202 3.2 Q 29.85 5 1.23E -02 5.9
LYM 7 1159 4.3 B 0.464 8.85E -02 24 LYM 7 1159 1.5 Q 29.84 5 1.27E -02 5.9
LYM 24 1206 4.1 B 0.491 8.92E -02 31.2 LYM 66 1195 5.2 Q 30.36 5 1.58E -02 7.7
LYM 2 1169 1.2 B 0.454 9.14E -02 21.4 LYM 24 1206 1.2 Q 29.76 1.61E -02 5.6
LYM 13 1177 2.2 B 0.474 9.21E -02 26.9 LYM 69 1185 2.2 Q 29.82 1.91E -02 5.8
LYM 68 1194 2.3 B 0.426 9.22E -02 13.9 LYM 62 1202 3.7 Q 29.69 2.03E -02 5.3
197
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 44 1188 4.3 B 0.414 9.80E -02 10.6 LYM 17 1168 4.4 Q 29.68 2.16E -02 5.3
CON TRO L B 0.374 0 LYM 7 1159 2.1 Q 31.66 3.45E -02 12.3
LYM 95 1212 1.3 C 0.73 2.06E -04 46.2 LYM 31 1192 3.1 Q 29.53 3.69E -02 4.8
LYM 10 1174 1.2 C 0.655 3.02E -03 31.2 LYM 53 1184 1.2 Q 30.06 3.89E -02 6.7
LYM 21 1167 1.2 C 0.619 4.67E -03 23.9 LYM 57 1201 2.6 Q 29.38 4.78E -02 4.2
LYM 62 1202 4.2 C 0.626 7.02E -03 25.3 LYM 66 1195 4.4 Q 31.52 5.68E -02 11.8
LYM 66 1195 3.1 C 0.602 1.02E -02 20.5 LYM 14 1205 2.4 Q 29.42 5.94E -02 4.4
LYM 1174 p 0.602 1.02E 20.5 LYM 1189 Q 30.18 6.04E 7.1
10 4.1 -02 51 4.2 5 -02
LYM 4 1170 6.5 c 0.575 3.74E -02 15.2 LYM 68 1194 1.3 Q 30.51 5 6.20E -02 8.3
LYM 44 1188 2.1 c 0.569 5.06E -02 13.9 LYM 8 1198 4.1 Q 29.39 5 6.25E -02 4.3
LYM 66 1195 5.2 c 0.586 5.09E -02 17.4 LYM 30 1191 2.6 Q 31.81 5 6.57E -02 12.9
LYM 82 1220 1.1 c 0.567 6.28E -02 13.6 LYM 13 1177 2.1 Q 29.53 8.65E -02 4.8
LYM 1194 p 0.564 6.49E 13.1 LYM 1206 Q 30.50 9.05E 8.2
68 1.4 -02 24 4.1 5 -02
LYM 95 1212 1.2 c 0.557 9.41E -02 11.6 LYM 44 1188 5.4 Q 29.57 9.26E -02 4.9
CON TRO L c 0.499 0 LYM 1 1160 1.1 Q 29.68 5 9.43E -02 5.3
LYM 31 1192 3.1 D 9.125 4.78E -04 8.8 CON TRO L Q 28.18 3 0
LYM 26 1182 4.6 D 8.938 4.23E -03 6.5 LYM 175 1265 1.6 A 1.514 2.92E -03 50.2
LYM 4 1170 5.2 D 8.938 4.23E -03 6.5 LYM 256 1332 1.2 A 1.169 5.61E -02 16
LYM 9 1163 2.1 D 8.938 4.23E -03 6.5 LYM 147 1258 1.4 A 1.154 6.79E -02 14.5
LYM 44 1188 2.1 D 8.875 4.88E -03 5.8 CON TRO L A 1.008 0
LYM 8 1198 4.1 D 8.875 4.88E -03 5.8 LYM 207 1325 1.4 B 0.356 7.41E -02 8.2
LYM 4 1170 2.1 D 9.5 5.72E -03 13.3 LYM 73 1262 4.1 B 0.362 9.94E -02 9.9
LYM 10 1174 4.5 D 8.813 1.53E -02 5.1 CON TRO L B 0.329 0
LYM 24 1206 1.1 D 8.813 1.53E -02 5.1 LYM 206 1260 1.3 C 0.313 3.92E -03 31.8
198
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 66 1195 2.1 D 8.75 1.97E -02 4.3 LYM 207 1325 1.4 C 0.281 2.47E -02 18.2
LYM 69 1185 1.2 D 8.75 1.97E -02 4.3 LYM 241 1327 1.2 c 0.291 3.27E -02 22.5
LYM 95 1212 1.3 D 8.75 1.97E -02 4.3 LYM 159 1335 4.5 c 0.272 4.39E -02 14.8
LYM 53 1184 2.4 D 9 3.32E -02 7.3 LYM 91 1328 3.1 c 0.268 7.20E -02 13
LYM 16 1162 3.2 D 8.875 6.05E -02 5.8 CON TRO L c 0.237 0
LYM 37 1180 3.2 D 8.875 6.05E -02 5.8 LYM 175 1265 3.3 D 9 1.81E -02 3
LYM 57 1201 2.6 D 8.875 6.05E -02 5.8 LYM 206 1260 3.1 D 9 1.81E -02 3
LYM 15 1161 4.4 D 8.688 6.06E -02 3.6 LYM 147 1258 1.4 D 9.25 7.10E -02 5.9
LYM 43 1179 1.5 D 8.688 6.06E -02 3.6 LYM 147 1258 4.4 D 9.25 7.10E -02 5.9
LYM 44 1188 5.3 D 8.625 8.97E -02 2.8 CON TRO L D 8.734 0
LYM 53 1184 4.2 D 8.625 8.97E -02 2.8 LYM 207 1325 1.4 E 0.494 2.25E -03 29
LYM 7 1159 4.3 D 8.625 8.97E -02 2.8 LYM 206 1260 1.3 E 0.49 3.51E -03 27.9
CON TRO L D 8.388 0 LYM 91 1328 3.1 E 0.451 2.44E -02 17.8
LYM 95 1212 1.3 E 0.871 6.40E -05 20.5 CON TRO L E 0.383 0
LYM 10 1174 1.2 E 0.854 1.68E -04 18 LYM 175 1265 1.6 F 8.457 9.98E -03 14.9
LYM 51 1189 3.4 E 0.814 1.64E -03 12.5 LYM 241 1327 1.2 F 7.999 8.84E -02 8.7
LYM 26 1182 4.1 E 0.864 3.71E -03 19.4 CON TRO L F 7.36 0
LYM 16 1162 3.2 E 0.793 8.69E -03 9.6 LYM 241 1327 1.2 G 13.92 4 3.22E -02 20.3
LYM 12 1187 1.1 E 0.79 8.71E -03 9.2 LYM 256 1332 2.3 G 13.01 2 5.32E -02 12.5
LYM 41 1183 4.3 E 0.788 9.62E -03 9 LYM 91 1328 3.1 G 12.99 6 5.81E -02 12.3
LYM 44 1188 5.4 E 0.791 2.21E -02 9.3 CON TRO L G 11.57 0
LYM 17 1168 1.4 E 0.788 2.38E -02 8.9 LYM 206 1260 1.3 H 0.038 9.68E -03 39.1
LYM 21 1167 3.1 E 0.822 2.48E -02 13.7 LYM 206 1260 2.1 H 0.037 3.48E -02 35.7
199
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 20 1171 1.1 E 0.786 4.67E -02 8.7 LYM 147 1258 4.4 H 0.036 4.44E -02 30.6
LYM 4 1170 6.5 E 0.818 5.29E -02 13.1 LYM 147 1258 3.3 H 0.035 4.93E -02 29.1
LYM 68 1194 2.3 E 0.786 6.52E -02 8.7 LYM 203 1266 4.1 H 0.035 7.71E -02 27.4
LYM 53 1184 1.1 E 0.823 9.25E -02 13.8 LYM 159 1335 4.6 H 0.035 8.34E -02 28.1
CON TRO L E 0.723 0 LYM 241 1327 1.2 H 0.034 9.00E -02 24.6
LYM 34 1190 2.2 F 13.36 3 5.21E -03 33.8 CON TRO L H 0.027 0
LYM 17 1168 1.4 F 11.76 4 3.07E -02 17.8 LYM 206 1260 1.3 I 1.904 2.91E -02 34.1
LYM 37 1180 2.2 F 11.83 9 5.95E -02 18.5 LYM 147 1258 3.3 I 1.834 5.96E -02 29.1
CON TRO L F 9.989 0 LYM 147 1258 4.4 I 1.823 6.86E -02 28.3
LYM 21 1167 1.2 G 29.31 8 2.73E -03 29 CON TRO L I 1.421 0
LYM 95 1212 1.3 G 35.39 8 5.12E -03 55.7 LYM 206 1260 1.3 J 0.238 2.91E -02 34.1
LYM 44 1188 2.1 G 28.41 9 6.04E -03 25 LYM 147 1258 3.3 J 0.229 5.96E -02 29.1
LYM 10 1174 1.2 G 31.63 6 7.14E -03 39.1 LYM 147 1258 4.4 J 0.228 6.86E -02 28.3
LYM 66 1195 3.1 G 28.02 8.78E -03 23.2 CON TRO L J 0.178 0
LYM 4 1170 6.5 G 28.51 5 1.11E -02 25.4 LYM 206 1260 1.3 K 0.227 3.54E -02 26.3
LYM 62 1202 4.2 G 30.01 7 1.16E -02 32 LYM 203 1266 4.1 K 0.225 6.18E -02 25.1
LYM 66 1195 5.2 G 27.27 7 1.76E -02 20 LYM 159 1335 4.6 K 0.22 8.46E -02 22.6
LYM 68 1194 1.4 G 26.64 6 3.40E -02 17.2 LYM 206 1260 2.1 K 0.223 8.54E -02 24
LYM 82 1220 1.1 G 26.54 8 4.02E -02 16.8 LYM 241 1327 1.2 K 0.217 9.49E -02 21.1
LYM 9 1163 2.1 G 26.84 5 4.65E -02 18.1 CON TRO L K 0.179 0
LYM 53 1184 1.1 G 28.48 2 7.52E -02 25.3 LYM 241 1327 1.2 L 1.74 3.22E -02 20.3
LYM 95 1212 1.2 G 26.98 6 9.98E -02 18.7 LYM 256 1332 2.3 L 1.627 5.32E -02 12.5
CON TRO L G 22.73 5 0 LYM 91 1328 3.1 L 1.625 5.81E -02 12.3
200
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 95 1212 1.3 H 0.094 1.34E -02 47.3 CON TRO L L 1.446 0
LYM 10 1174 1.2 H 0.084 7.76E -02 31.9 LYM 206 1260 1.3 M 2.453 2.09E -03 18
CON TRO L H 0.064 0 LYM 241 1327 1.2 M 2.397 1.28E -02 15.3
LYM 95 1212 1.3 I 4.691 6.13E -03 54.8 LYM 207 1325 1.4 M 2.296 3.04E -02 10.4
LYM 10 1174 1.2 I 4.228 3.51E -02 39.5 LYM 147 1258 4.4 M 2.386 8.91E -02 14.8
LYM 62 1202 4.2 I 3.957 8.88E -02 30.6 LYM 256 1332 2.3 M 2.239 9.17E -02 7.7
LYM 10 1174 4.5 I 3.988 9.32E -02 31.6 CON TRO L M 2.079 0
CON TRO L I 3.03 0 LYM 236 1259 4.3 O 0.026 6.00E -02 15.3
LYM 95 1212 1.3 J 0.586 8.07E -03 52.2 LYM 147 1258 4.4 O 0.028 6.46E -02 22.5
LYM 10 1174 1.2 J 0.529 4.45E -02 37.2 CON TRO L o 0.023 0
CON TRO L J 0.385 0 LYM 157 1334 1.3 P 93.97 7 3.21E -02 2.1
LYM 95 1212 1.3 K 0.411 5.44E -03 28.5 LYM 256 1332 4.2 P 93.95 4 3.46E -02 2.1
LYM 10 1174 1.2 K 0.392 2.01E -02 22.4 LYM 159 1335 4.5 P 93.98 3 7.24E -02 2.1
LYM 10 1174 4.5 K 0.383 4.42E -02 19.7 LYM 223 1267 1.2 P 93.58 7 8.19E -02 1.7
LYM 10 1174 4.1 K 0.378 5.54E -02 18.2 LYM 157 1334 1.7 P 93.61 6 9.88E -02 1.7
LYM 26 1182 4.1 K 0.377 6.36E -02 17.6 CON TRO L P 92.01 8 0
LYM 21 1167 1.2 K 0.377 6.69E -02 17.8 LYM 250 1261 3.4 Q 30.53 5 3.32E -03 7.9
LYM 68 1194 1.4 K 0.373 7.72E -02 16.6 LYM 206 1260 1.2 Q 29.68 5 1.79E -02 4.9
CON TRO L K 0.32 0 LYM 147 1258 2.3 Q 29.84 3.32E -02 5.5
LYM 21 1167 1.2 L 3.665 3.75E -03 26.8 LYM 203 1266 2.3 Q 31.71 5 3.46E -02 12.1
LYM 95 1212 1.3 L 4.425 5.70E -03 53.1 LYM 157 1334 1.3 Q 29.42 4.35E -02 4
LYM 10 1174 1.2 L 3.954 8.47E -03 36.9 LYM 206 1260 3.2 Q 29.34 6.50E -02 3.7
201
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 44 1188 2.1 L 3.552 8.51E -03 22.9 LYM 91 1328 3.1 Q 29.24 5 7.37E -02 3.3
LYM 66 1195 3.1 L 3.502 1.25E -02 21.2 CON TRO L Q 28.29 8 0
LYM 10 1174 4.1 L 3.498 1.28E -02 21.1 LYM 206 1260 3.1 R 0.682 1.24E -02 27.2
LYM 62 1202 4.2 L 3.752 1.43E -02 29.9 CON TRO L R 0.536 0
LYM 4 1170 6.5 L 3.564 1.51E -02 23.4 LYM 113 1244 3.1 B 0.532 9.57E -03 25.9
LYM 66 1195 5.2 L 3.41 2.53E -02 18 LYM 267 1360 4.5 B 0.48 2.91E -02 13.6
LYM 68 1194 1.4 L 3.331 4.96E -02 15.3 LYM 285 1273 4.7 B 0.477 3.69E -02 12.8
LYM 82 1220 1.1 L 3.319 5.85E -02 14.8 LYM 113 1244 4.4 B 0.464 9.15E -02 9.7
LYM 9 1163 2.1 L 3.356 6.43E -02 16.1 CON TRO L B 0.423 0
LYM 53 1184 1.1 L 3.56 8.80E -02 23.2 CON TRO L E 0.515 0
CON TRO L L 2.889 0 LYM 255 1308 1.5 F 8.406 9.80E -05 18.5
LYM 95 1212 1.3 M 3.993 1.50E -05 26.6 LYM 116 1320 4.6 F 7.893 5.HE -04 11.2
LYM 10 1174 1.2 M 3.71 3.24E -04 17.6 LYM 287 1277 1.6 F 7.885 5.55E -04 11.1
LYM 62 1202 4.2 M 3.594 1.18E -03 14 LYM 284 1288 4.6 F 7.834 7.75E -04 10.4
LYM 10 1174 4.1 M 3.58 1.97E -03 13.5 LYM 239 1304 1.7 F 7.666 3.45E -03 8
LYM 82 1220 1.1 M 3.499 8.49E -03 10.9 LYM 113 1244 4.5 F 8.133 6.77E -03 14.6
LYM 44 1188 5.4 M 3.407 2.47E -02 8 LYM 287 1277 1.7 F 7.628 7.48E -03 7.5
LYM 9 1163 2.1 M 3.475 2.70E -02 10.2 LYM 110 1292 3.5 F 8.115 1.19E -02 14.4
LYM 20 1171 1.1 M 3.387 2.94E -02 7.4 LYM 52 1289 5.7 F 7.749 1.33E -02 9.2
LYM 66 1195 3.1 M 3.494 3.07E -02 10.8 LYM 238 1276 4.8 F 8.587 4.56E -02 21
LYM 21 1167 3.1 M 3.421 3.23E -02 8.5 LYM 112 1337 4.4 F 7.715 6.97E -02 8.7
LYM 51 1189 3.4 M 3.481 3.65E -02 10.4 LYM 56 1311 2.5 F 7.798 9.00E -02 9.9
LYM 43 1179 2.2 M 3.43 5.63E -02 8.7 CON TRO L F 7.096 0
202
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 26 1182 4.1 M 3.537 6.22E -02 12.1 LYM 56 1311 1.7 N 0.554 7.80E -02 10.8
LYM 17 1168 2.3 M 3.353 6.60E -02 6.3 CON TRO L N 0.5 0
LYM 16 1162 3.2 M 3.512 6.70E -02 11.3 LYM 255 1308 2.9 O 0.025 3.34E -02 7.8
LYM 66 1195 5.2 M 3.419 8.25E -02 8.4 LYM 141 1240 2.4 O 0.027 3.92E -02 19.5
LYM 17 1168 1.4 M 3.326 8.35E -02 5.5 LYM 113 1244 2.1 o 0.025 4.02E -02 7.8
LYM 41 1183 4.3 M 3.318 9.59E -02 5.2 CON TRO L o 0.023 0
LYM 21 1167 1.2 M 3.649 9.83E -02 15.7 LYM 181 1357 2.2 P 95.24 7 4.17E -02 1.9
CON TRO L M 3.154 0 LYM 239 1304 4.9 P 95.31 7 9.21E -02 2
LYM 66 1195 4.4 N 0.311 2.80E -03 25.1 LYM 232 1302 3.6 P 93.97 6 9.43E -02 0.6
LYM 31 1192 3.1 N 0.302 5.66E -03 21.3 LYM 156 1296 3.5 P 94.45 2 9.56E -02 1.1
LYM 8 1198 2.4 N 0.301 5.78E -03 21.2 CON TRO L P 93.44 1 0
LYM 17 1168 3.1 N 0.296 1.02E -02 18.9 LYM 255 1308 2.9 Q 34.41 5 9.06E -03 8.2
LYM 7 1159 4.3 N 0.284 4.39E -02 14 LYM 112 1337 2.3 Q 34.23 1.03E -02 7.6
LYM 57 1201 2.6 N 0.285 5.22E -02 14.6 LYM 196 1361 3.1 Q 33.73 5 3.50E -02 6.1
LYM 17 1168 4.5 N 0.277 8.28E -02 11.1 LYM 121 1321 1.8 Q 33.46 7.26E -02 5.2
LYM 13 1177 2.2 N 0.311 9.17E -02 25.1 LYM 287 1277 1.7 Q 33.23 7.99E -02 4.5
CON TRO L N 0.249 0 LYM 56 1311 1.7 Q 33.21 8.34E -02 4.4
LYM 12 1187 2.1 O 0.024 1.60E -05 19.6 LYM 156 1296 3.3 Q 33.4 9.09E -02 5
LYM 22 1176 2.1 O 0.022 4.50E -05 13.3 LYM 238 1276 1.6 Q 34.2 9.81E -02 7.5
LYM 43 1179 2.2 o 0.026 4.80E -05 33.1 CON TRO L Q 31.80 9 0
LYM 31 1192 3.4 o 0.022 1.05E -04 12.1
LYM 43 1179 1.2 o 0.022 1.77E -04 11.2
LYM 53 1184 1.1 o 0.022 3.43E -04 10
203
2018271407 30 Nov 2018
Gene name Even t ID Mean P value % incr. vs. cont. Gene name Even t ID Mean P value % incr. vs. cont.
LYM 95 1212 1.3 O 0.026 3.71E -04 33.1
LYM 95 1212 1.2 o 0.023 3.96E -04 14.5
LYM 10 1174 4.1 o 0.023 2.55E -03 15.8
LYM 4 1170 2.1 o 0.021 3.43E -03 8.2
LYM 82 1220 4.6 o 0.021 4.85E -03 6.4
LYM 82 1220 4.2 o 0.021 6.10E -03 6.4
LYM 34 1190 4.3 o 0.021 6.18E -03 6.7
LYM 14 1205 4.2 o 0.021 1.02E -02 5.5
LYM 66 1195 4.4 o 0.023 3.15E -02 14.6
LYM 6 1173 4.3 o 0.024 6.98E -02 22.1
LYM 16 1162 3.2 o 0.023 7.55E -02 15.8
LYM 82 1220 1.1 o 0.024 9.20E -02 21.9
CON TRO L o 0.02 0
Table 30. Results of the greenhouse experiments. Provided are the measured values of each tested parameter [parameters (ID.) A-P according to the parameters described in Table 29 above] in plants expressing the indicated polynucleotides. “Ev” = event; “P” = P-value; “Mean ” = the average of measured parameter across 5 replicates. % incr. vs. cont. = percentage of increase versus control (as compared to control).
Table 31
Measured parameters at the greenhouse till bolting assay (T2 experiment) for transformed agriculture improving trait genes
Tested Parameters ID
Blade Relative Area TP4 A
Dry Weight (gr) B
Fresh Weight (gr) C
Leaf Blade Area TP4 (cm2) D
Leaf Number TP4 E
Leaf Petiole Length TP4 (cm) F
Petiole Relative Area TP4 G
Plot Coverage TP4 (cm2) H
RGR Of Leaf Blade Area J
RGR Of Leaf Number K
204
2018271407 30 Nov 2018
Tested Parameters ID
RGR Of Plot Coverage L
RGR Of Rosette Area M
RGR Of Rosette Diameter N
Rosette Area TP4 (cm2) O
Rosette Diameter TP4 (cm) P
Table 31: Provided are the identification (ID) letters of each of the Tested
Parameters. TP4-time Point 4; RGR - Relative Growth Rate.
Table 32
Results obtained in a T2 experiment at the bolting assay
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM14 12052. 5 A 92.4 05 3.09E03 2.5 LYM31 11923. 4 F 0.48 9 1.69E04 26.4
LYM62 12022. 4 A 92.3 49 4.28E03 2.5 LYM11 6 13202. 12 F 0.47 9 5.48E04 23.8
LYM20 11712. 2 A 92.8 93 5.39E03 3.1 LYM23 8 12764. 8 F 0.45 9 1.64E03 18.6
LYM24 12064. 1 A 92.3 39 6.75E03 2.5 LYM20 11711. 2 F 0.45 8 1.80E03 18.5
LYM57 12012. 2 A 92.2 51 6.81E03 2.4 LYM67 11782. 6 F 0.45 5 2.14E03 17.7
LYM2 11695. 1 A 92.1 21 7.11E03 2.2 LYM88 12193. 1 F 0.49 4 2.43E03 27.7
LYM15 11612. 2 A 94.3 48 1.01E02 4.7 LYM99 12244. 2 F 0.45 3.75E03 16.4
LYM21 11672. 4 A 92.4 04 1.14E02 2.5 LYM23 9 13044. 8 F 0.44 1 9.74E03 13.9
LYM19 11751. 4 A 91.8 36 1.32E02 1.9 LYM24 12061. 4 F 0.43 5 1.27E02 12.5
LYM53 11844. 2 A 91.8 22 1.53E02 1.9 LYM53 11841. 1 F 0.43 4 1.43E02 12.2
LYM12 11871. 1 A 92.9 49 1.90E02 3.2 LYM82 12201. 1 F 0.45 4 1.47E02 17.4
LYM17 11683. 1 A 92.2 67 2.24E02 2.4 LYM26 11824. 1 F 0.46 3.65E02 18.9
LYM57 12012. 4 A 91.6 37 2.27E02 1.7 LYM30 11912. 6 F 0.43 3 4.15E02 12
LYM51 11891. 1 A 91.8 13 2.38E02 1.9 LYM26 11824. 3 F 0.43 6 4.37E02 12.7
LYM41 11832. 2 A 91.5 78 2.83E02 1.6 LYM28 5 12733. 9 F 0.51 8 4.87E02 34
LYM19 11753. 1 A 91.9 58 3.26E02 2.1 LYM62 12023. 2 F 0.44 5 6.80E02 15.1
LYM51 11893. 4 A 91.5 04 3.29E02 1.5 LYM99 12243. 2 F 0.41 8 7.28E02 7.9
LYM35 11812. 3 A 91.4 89 3.40E02 1.5 LYM12 8 12641. 5 F 0.54 6 8.57E02 41
LYM2 11695. 3 A 91.5 33 5.57E02 1.6 LYM95 12121. 2 F 0.51 2 1.12E01 32.3
LYM34 11903. 2 A 91.7 66 6.00E02 1.8 LYM66 11953. 6 F 0.42 7 1.18E01 10.3
205
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11802. 2 A 92.4 9 7.93E02 2.6 LYM23 9 13042. 9 F 0.43 1 1.30E01 11.4
LYM10 11742. 2 A 91.5 36 7.98E02 1.6 LYM12 11872. 1 F 0.54 8 1.47E01 41.7
LYM31 11923. 4 A 91.4 74 8.92E02 1.5 LYM12 8 12641. 3 F 0.40 9 1.66E01 5.8
LYM30 11912. 7 A 91.1 22 9.52E02 1.1 LYM99 12243. 1 F 0.55 4 1.68E01 43.1
LYM9 11632. 1 A 91.3 52 1.07E01 1.4 LYM66 11954. 4 F 0.48 3 1.83E01 24.8
LYM26 11824. 6 A 91.0 76 1.19E01 1.1 LYM23 2 13024. 6 F 0.42 1.96E01 8.6
LYM57 12012. 6 A 91.0 44 1.24E01 1 LYM26 11824. 6 F 0.42 9 2.22E01 10.8
LYM16 11623. 2 A 92.1 18 1.47E01 2.2 LYM43 11791. 4 F 0.41 2.43E01 5.9
LYM69 11854. 2 A 92.1 15 1.61E01 2.2 LYM12 11873. 4 F 0.46 2 2.56E01 19.5
LYM57 12013. 1 A 91.8 86 1.66E01 2 LYM10 3 12713. 5 F 0.44 4 3.55E01 14.8
LYM15 11613. 3 A 91.9 04 1.68E01 2 LYM53 11842. 4 F 0.41 1 3.55E01 6.3
LYM20 11711. 3 A 91.6 69 1.89E01 1.7 LYM28 5 12734. 9 F 0.45 6 4.57E01 18
LYM41 11833. 1 A 91.3 84 1.92E01 1.4 LYM12 11871. 1 F 0.44 8 4.60E01 15.7
LYM67 11783. 5 A 91.0 23 1.94E01 1 LYM12 8 12641. 1 F 0.40 7 5.45E01 5.2
LYM22 11764. 1 A 90.8 53 2.00E01 0.8 LYM30 11913. 4 F 0.39 7 5.70E01 2.6
LYM69 11851. 2 A 91.7 4 2.05E01 1.8 LYM69 11852. 2 F 0.41 1 5.90E01 6.2
LYM66 11953. 1 A 92.2 57 2.06E01 2.4 LYM95 12124. 4 F 0.42 5 6.13E01 9.9
LYM26 11822. 5 A 91.0 28 2.12E01 1 LYM43 11793. 2 F 0.42 1 6.52E01 8.9
LYM30 11912. 6 A 90.8 41 2.14E01 0.8 LYM14 12051. 4 F 0.40 8 6.57E01 5.6
LYM31 11924. 4 A 91.9 21 2.30E01 2 LYM23 2 13024. 7 F 0.43 5 6.69E01 12.5
LYM4 11701. 1 A 91.7 54 2.39E01 1.8 LYM24 12064. 1 F 0.41 6 7.26E01 7.6
LYM14 12051. 4 A 90.8 3 2.43E01 0.8 LYM67 11782. 4 F 0.41 6 7.28E01 7.6
LYM67 11782. 6 A 91.4 69 2.52E01 1.5 LYM30 11913. 5 F 0.40 3 7.37E01 4.3
LYM62 12023. 2 A 91.7 52 2.52E01 1.8 LYM43 11791. 5 F 0.39 7 7.38E01 2.6
LYM57 12013. 5 A 91.6 99 2.60E01 1.8 LYM14 5 12951. 9 F 0.39 4 7.61E01 1.9
LYM68 11942. 2 A 90.9 59 2.62E01 0.9 LYM30 11912. 7 F 0.4 7.69E01 3.4
206
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM19 11752. 2 A 91.0 8 2.63E01 1.1 LYM31 11924. 4 F 0.40 7 7.75E01 5.2
LYM44 11884. 1 A 91.1 09 2.88E01 1.1 LYM99 12244. 1 F 0.40 2 7.94E01 3.8
LYM53 11841. 1 A 92.2 8 2.88E01 2.4 LYM26 11824. 5 F 0.40 6 8.37E01 5
LYM69 11852. 2 A 91.9 59 2.91E01 2.1 LYM20 11716. 5 F 0.39 5 8.66E01 2.1
LYM31 11923. 1 A 90.8 76 2.91E01 0.9 LYM66 11955. 2 F 0.39 2 8.71E01 1.4
LYM66 11955. 2 A 92.7 03 2.94E01 2.9 LYM53 11843. 2 F 0.39 4 8.94E01 1.8
LYM1 11603. 2 A 92.0 51 3.02E01 2.2 LYM23 2 13024. 4 F 0.39 7 9.29E01 2.6
LYM41 11831. 5 A 91.8 26 3.07E01 1.9 LYM15 6 12963. 1 F 0.38 9 9.65E01 0.6
LYM20 11711. 2 A 90.8 81 3.47E01 0.9 LYM88 12194. 2 F 0.38 7 9.95E01 0.1
LYM13 11771. 6 A 90.6 5 3.62E01 0.6 CONTR OL F 0.38 7 0
LYM67 11781. 5 A 90.9 95 3.69E01 1 LYM88 12193. 1 G 8.06 6 2.50E05 25.2
LYM2 11691. 2 A 91.3 85 3.77E01 1.4 LYM23 2 13024. 4 G 7.58 9 2.58E04 17.8
LYM30 11913. 4 A 90.8 53 3.81E01 0.8 LYM99 12244. 2 G 7.54 9 3.29E04 17.2
LYM1 11601. 1 A 90.8 59 3.94E01 0.8 LYM88 12191. 2 G 7.73 6 2.37E03 20.1
LYM10 11741. 2 A 91.0 19 3.97E01 1 LYM62 12023. 2 G 7.93 2 2.88E03 23.1
LYM24 12061. 1 A 91.6 43 3.97E01 1.7 LYM30 11912. 6 G 7.21 5 4.09E03 12
LYM13 11772. 1 A 91.7 42 4.02E01 1.8 LYM12 8 12641. 5 G 7.22 8 5.32E03 12.2
LYM14 12051. 1 A 90.7 81 4.03E01 0.7 LYM11 6 13204. 4 G 7.07 5 8.47E03 9.8
LYM4 11705. 2 A 92.1 32 4.20E01 2.2 LYM82 12201. 1 G 7.08 4 8.81E03 9.9
LYM17 11682. 1 A 92.4 67 4.22E01 2.6 LYM69 11852. 2 G 7.05 5 9.96E03 9.5
LYM1 11604. 4 A 91.8 03 4.50E01 1.9 LYM66 11953. 1 G 7.11 8 1.07E02 10.5
LYM8 11982. 4 A 91.7 23 4.54E01 1.8 LYM53 11844. 2 G 7.00 5 1.48E02 8.7
LYM34 11902. 2 A 91.3 34 4.56E01 1.4 LYM57 12012. 6 G 7.01 4 1.54E02 8.9
LYM43 11793. 2 A 91.5 34 4.59E01 1.6 LYM23 8 12764. 8 G 7.25 1 2.21E02 12.5
LYM51 11894. 2 A 91.5 83 4.61E01 1.6 LYM31 11921. 3 G 6.95 5 2.21E02 7.9
LYM21 11674. 5 A 90.7 03 4.62E01 0.7 LYM30 11913. 5 G 7.74 2 2.81E02 20.2
207
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM69 11853. 4 A 91.0 48 5.05E01 1 LYM43 11791. 5 G 7.09 3 2.87E02 10.1
LYM12 11874. 1 A 90.8 63 5.30E01 0.8 LYM53 11842. 4 G 7.51 7 3.17E- 02 16.7
LYM44 11885. 3 A 91.4 11 5.42E01 1.4 LYM99 12244. 1 G 6.95 2 3.21E- 02 7.9
LYM12 11872. 1 A 91.4 94 5.47E01 1.5 LYM15 6 12963. 1 G 6.88 6 3.95E02 6.9
LYM9 11633. 7 A 90.8 19 5.50E01 0.8 LYM41 11831. 1 G 7 4.82E02 8.6
LYM13 11772. 2 A 91.5 48 5.65E01 1.6 LYM31 11923. 4 G 7.55 1 4.93E02 17.2
LYM34 11903. 3 A 91.3 19 5.74E01 1.3 LYM27 1 12724. 9 G 6.86 4 5.02E02 6.5
LYM67 11782. 5 A 90.9 78 5.82E01 1 LYM95 12124. 4 G 6.87 3 5.19E- 02 6.7
LYM51 11893. 2 A 90.8 2 5.94E01 0.8 LYM82 12204. 2 G 7.05 2 1.10E- 01 9.4
LYM15 11611. 3 A 90.3 87 6.12E- 01 0.3 LYM12 5 12932. 6 G 6.75 2 1.22E- 01 4.8
LYM12 11874. 3 A 90.4 71 6.22E01 0.4 LYM12 11872. 1 G 7.49 9 1.25E- 01 16.4
LYM13 11771. 9 A 90.4 21 6.27E01 0.3 LYM12 1 13214. 5 G 6.73 7 1.37E- 01 4.6
LYM62 12022. 2 A 90.9 02 6.52E01 0.9 LYM23 9 13042. 9 G 6.75 1.43E- 01 4.8
LYM41 11834. 2 A 90.9 79 6.83E01 1 LYM66 11954. 4 G 6.90 2 1.52E- 01 7.1
LYM19 11751. 5 A 91.1 21 6.90E01 1.1 LYM51 11894. 2 G 7.54 1.56E- 01 17
LYM35 11813. 5 A 90.6 06 7.22E01 0.6 LYM28 5 12734. 9 G 8.17 9 1.81E- 01 26.9
LYM22 11762. 2 A 90.4 75 7.23E01 0.4 LYM12 8 12641. 4 G 6.70 2 1.87E- 01 4
LYM16 11622. 4 A 90.5 91 7.35E01 0.5 LYM57 12012. 4 G 6.72 5 1.88E- 01 4.4
LYM67 11783. 4 A 90.5 78 7.36E01 0.5 LYM14 12052. 5 G 7.47 2 1.90E- 01 16
LYM17 11684. 4 A 90.5 39 7.37E01 0.5 LYM23 9 13044. 8 G 7.08 7 1.96E- 01 10
LYM41 11831. 1 A 90.5 19 7.60E01 0.5 LYM43 11791. 4 G 8.56 7 2.01E01 33
LYM9 11633. 2 A 90.3 43 7.61E- 01 0.3 LYM12 1 13212. 6 G 7.74 6 2.15E01 20.2
LYM14 12052. 4 A 90.5 86 7.64E01 0.5 LYM99 12243. 1 G 7.93 5 2.19E01 23.1
LYM43 11792. 2 A 90.6 7 7.75E01 0.6 LYM62 12022. 4 G 7.20 9 2.28E01 11.9
LYM66 11953. 6 A 90.6 49 7.76E01 0.6 LYM56 13112. 6 G 7.56 7 2.56E01 17.4
LYM20 11716. 5 A 90.5 96 7.79E01 0.5 LYM14 12054. 2 G 7.74 7 2.74E01 20.2
208
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11803. 1 A 90.3 46 8.10E01 0.3 LYM69 11853. 4 G 7.20 1 3.46E01 11.8
LYM30 11913. 5 A 90.5 39 8.10E01 0.5 LYM12 11873. 4 G 8.01 6 3.55E01 24.4
LYM21 11673. 1 A 90.5 85 8.23E01 0.5 LYM51 11891. 1 G 7.38 6 3.60E01 14.6
LYM17 11684. 5 A 90.7 47 8.33E01 0.7 LYM95 12121. 2 G 6.91 2 3.61E01 7.3
LYM34 11904. 3 A 90.4 07 8.52E01 0.3 LYM14 5 12952. 9 G 7.17 3.74E01 11.3
LYM24 12063. 3 A 90.6 82 8.56E01 0.6 LYM28 4 12884. 7 G 6.91 3.81E01 7.2
LYM2 11692. 3 A 90.2 03 8.71E01 0.1 LYM53 11841. 2 G 7.39 3.85E01 14.7
LYM24 12062. 3 A 90.6 8.81E01 0.5 LYM23 8 12762. 8 G 7.07 5 3.94E01 9.8
LYM22 11762. 1 A 90.2 01 8.83E01 0.1 LYM62 12022. 1 G 7.52 5 3.95E01 16.8
LYM37 11803. 2 A 90.2 44 9.04E01 0.2 LYM43 11791. 2 G 7.70 3 4.20E01 19.5
LYM62 12022. 1 A 90.2 33 9.15E01 0.1 LYM51 11893. 4 G 7.27 2 4.52E01 12.9
LYM51 11892. 1 A 90.1 54 9.39E01 0.1 LYM15 6 12961. 9 G 6.67 7 4.65E01 3.6
LYM10 11744. 1 A 90.1 87 9.50E01 0.1 LYM31 11922. 3 G 6.66 1 4.71E01 3.4
LYM68 11941. 4 A 90.1 63 9.56E01 0.1 LYM43 11793. 2 G 7.39 3 4.87E01 14.7
LYM17 11683. 3 A 90.1 95 9.65E01 0.1 LYM23 2 13024. 6 G 6.59 6 4.89E01 2.4
LYM9 11632. 2 A 90.1 28 9.71E01 0 LYM23 2 13024. 5 G 6.73 2 4.92E01 4.5
LYM19 11754. 1 A 90.1 18 9.95E01 0 LYM14 5 12954. 7 G 6.58 4.97E01 2.1
CONTR OL A 90.1 08 0 LYM41 11833. 1 G 6.86 5 5.04E01 6.5
LYM14 12051. 4 B 0.21 1 5.89E03 26.4 LYM12 8 12641. 1 G 6.79 6 5.07E01 5.5
LYM10 11744. 1 B 0.2 1.92E02 20 LYM14 12051. 1 G 6.80 8 5.14E01 5.7
LYM34 11902. 2 B 0.19 2 6.57E02 15.1 LYM53 11841. 1 G 6.94 7 5.15E01 7.8
LYM9 11632. 1 B 0.19 1 7.00E02 14.4 LYM88 12194. 2 G 6.86 4 5.26E01 6.5
LYM2 11695. 1 B 0.18 8 1.04E01 12.5 LYM24 12061. 4 G 6.84 2 5.31E01 6.2
LYM57 12013. 1 B 0.18 8 1.04E01 12.5 LYM62 12023. 4 G 7.30 8 5.31E01 13.4
LYM66 11954. 4 B 0.19 1 1.36E01 14.4 LYM51 11893. 2 G 6.68 9 5.34E01 3.8
LYM57 12012. 4 B 0.19 1 1.42E01 14.7 LYM57 12012. 2 G 6.68 6 5.42E01 3.8
209
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11953. 6 B 0.18 6 1.65E- 01 11.7 LYM30 11912. 7 G 6.94 9 5.55E01 7.8
LYM37 11803. 1 B 0.18 3 1.75E- 01 10.1 LYM66 11953. 6 G 6.63 2 5.60E01 2.9
LYM53 11844. 2 B 0.18 4 1.80E- 01 10.2 LYM53 11843. 2 G 6.95 9 5.75E01 8
LYM9 11632. 2 B 0.18 6 1.90E- 01 11.4 LYM56 13111. 7 G 7.26 8 5.80E01 12.8
LYM35 11812. 3 B 0.18 9 2.46E01 13.2 LYM67 11783. 5 G 6.72 4 5.88E01 4.4
LYM4 11701. 1 B 0.18 4 2.47E01 10.2 LYM95 12124. 5 G 6.84 9 6.12E- 01 6.3
LYM31 11924. 4 B 0.18 1 2.72E01 8.4 LYM31 11924. 4 G 6.59 7 6.17E- 01 2.4
LYM35 11813. 5 B 0.21 9 2.93E01 31.2 LYM41 11832. 2 G 6.53 3 6.27E01 1.4
LYM57 12012. 6 B 0.18 7 2.98E01 12.1 LYM51 11892. 1 G 6.97 8 6.31E- 01 8.3
LYM1 11604. 4 B 0.18 4 3.17E- 01 10.6 LYM43 11792. 2 G 6.78 2 6.47E01 5.2
LYM14 12051. 1 B 0.18 3.27E01 8 LYM28 5 12734. 7 G 7.28 4 6.55E01 13
LYM30 11912. 6 B 0.19 1 3.85E01 14.3 LYM27 1 12721. 8 G 6.63 7 6.59E01 3
LYM13 11771. 6 B 0.20 8 4.16E01 24.9 LYM30 11913. 4 G 7.07 6.73E01 9.7
LYM13 11771. 9 B 0.19 2 4.37E01 15.1 LYM31 11923. 1 G 6.85 4 6.88E01 6.4
LYM31 11923. 1 B 0.17 6 4.57E01 5.4 LYM82 12203. 2 G 6.63 5 7.11E- 01 3
LYM67 11783. 5 B 0.17 8 4.69E01 6.9 LYM20 11716. 3 G 6.74 7.14E- 01 4.6
LYM10 11741. 2 B 0.17 7 5.16E- 01 6.1 LYM23 9 13041. 7 G 6.70 9 7.58E01 4.1
LYM21 11673. 1 B 0.17 6 5.27E01 5.7 LYM24 12064. 1 G 6.57 3 7.64E01 2
LYM69 11851. 2 B 0.17 8 5.36E01 6.5 LYM23 9 13044. 7 G 6.62 9 7.70E01 2.9
LYM69 11852. 2 B 0.17 9 5.45E01 7.6 LYM88 12193. 5 G 6.59 5 7.72E01 2.4
LYM1 11603. 2 B 0.17 3 6.15E- 01 3.5 LYM20 11712. 2 G 6.61 6 7.87E01 2.7
LYM7 11594. 2 B 0.18 4 6.18E- 01 10.2 LYM62 12022. 2 G 6.61 2 7.91E01 2.6
LYM34 11903. 2 B 0.18 8 6.33E01 12.9 LYM67 11782. 6 G 6.50 9 7.99E01 1
LYM21 11674. 5 B 0.17 2 6.73E01 3.1 LYM20 11716. 5 G 6.54 1 8.15E- 01 1.5
LYM68 11942. 3 B 0.17 6 6.91E- 01 5.7 LYM23 2 13024. 7 G 6.66 3 8.27E01 3.4
LYM14 12054. 2 B 0.17 6 7.18E- 01 5.4 LYM26 11824. 1 G 6.55 8 8.57E01 1.8
210
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM30 11913. 4 B 0.17 6 7.18E01 5.4 LYM99 12243. 2 G 6.51 2 8.64E01 1.1
LYM51 11893. 2 B 0.17 1 7.40E01 2.4 LYM12 1 13211. 8 G 6.51 1 8.82E01 1
LYM53 11842. 4 B 0.18 2 7.45E01 9.1 LYM99 12241. 1 G 6.50 3 8.85E01 0.9
LYM44 11884. 3 B 0.17 1 8.45E01 2.4 LYM14 12051. 4 G 6.46 8 8.96E01 0.4
LYM17 11683. 3 B 0.16 9 8.75E01 1.2 LYM67 11782. 4 G 6.53 6 9.09E01 1.4
LYM15 11611. 3 B 0.16 8 9.01E01 0.9 LYM26 11824. 5 G 6.46 9 9.55E01 0.4
LYM8 11982. 7 B 0.16 9 9.10E01 1.2 LYM26 11824. 3 G 6.47 5 9.58E01 0.5
LYM12 11872. 1 B 0.16 9 9.21E01 1.6 LYM95 12121. 4 G 6.45 8 9.88E01 0.2
LYM51 11893. 4 B 0.16 9 9.25E01 1.6 LYM24 12062. 3 G 6.45 7 9.90E01 0.2
LYM34 11903. 3 B 0.16 8 9.59E01 0.5 LYM23 9 13041. 1 G 6.44 8 9.93E01 0.1
LYM7 11592. 1 B 0.16 8 9.67E01 0.5 LYM12 11871. 1 G 6.44 5 9.94E01 0
CONTR OL B 0.16 7 0 CONTR OL G 6.44 4 0
LYM10 11744. 1 C 2.88 1 4.60E03 21 LYM11 6 13202. 12 H 18.3 12 4.00E06 47.5
LYM35 11813. 5 C 2.85 6.51E03 19.7 LYM88 12193. 1 H 15.6 81 1.86E04 26.3
LYM9 11632. 1 C 2.85 6.67E03 19.7 LYM31 11923. 4 H 14.8 37 1.11E03 19.5
LYM57 12013. 1 C 2.73 8 2.45E02 15 LYM20 11711. 2 H 17.1 26 1.79E03 38
LYM9 11633. 7 C 2.71 3 3.07E02 13.9 LYM53 11841. 1 H 15.6 41 2.39E03 26
LYM35 11812. 3 C 2.68 1 6.94E02 12.6 LYM67 11782. 6 H 16.7 73 4.00E03 35.1
LYM66 11953. 6 C 2.60 6 1.11E01 9.5 LYM82 12201. 1 H 14.9 07 1.38E02 20.1
LYM14 12051. 4 C 2.78 8 2.12E01 17.1 LYM12 11871. 3 H 14.0 33 1.64E02 13.1
LYM57 12012. 4 C 2.55 2.56E01 7.1 LYM26 11824. 3 H 15.3 54 2.22E02 23.7
LYM13 11771. 9 C 2.69 4 2.59E01 13.2 LYM23 8 12764. 8 H 15.5 39 2.58E02 25.2
LYM1 11603. 2 C 2.55 2.80E01 7.1 LYM88 12194. 2 H 13.6 39 3.29E02 9.9
LYM66 11954. 4 C 2.52 5 3.28E01 6.1 LYM99 12244. 2 H 14.0 55 4.42E02 13.2
LYM68 11942. 2 C 2.49 4 4.00E01 4.8 LYM53 11843. 2 H 13.7 52 6.09E02 10.8
LYM30 11912. 6 C 2.66 2 4.05E01 11.8 LYM12 8 12641. 5 H 19.0 1 6.58E02 53.2
211
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM57 12012. 6 C 2.81 3 4.19E01 18.1 LYM99 12243. 1 H 18.3 8.16E02 47.4
LYM34 11902. 2 c 2.68 1 4.48E01 12.6 LYM26 11824. 1 H 16.7 06 8.96E02 34.6
LYM51 11893. 4 c 2.55 6 4.54E01 7.4 LYM12 8 12641. 3 H 16.7 7 9.41E02 35.1
LYM2 11695. 1 c 2.53 8 5.35E01 6.6 LYM23 9 13042. 9 H 15.3 16 1.28E- 01 23.4
LYM69 11851. 2 c 2.65 5.41E- 01 11.3 LYM26 11824. 6 H 15.6 43 1.64E- 01 26
LYM13 11771. 6 c 2.52 5 5.65E01 6.1 LYM28 5 12733. 9 H 18.9 28 1.66E- 01 52.5
LYM53 11844. 2 c 2.61 9 5.75E01 10 LYM20 11716. 5 H 13.6 67 1.68E- 01 10.1
LYM16 11623. 2 c 2.45 6 6.08E01 3.2 LYM24 12061. 4 H 15.8 75 1.72E- 01 27.9
LYM24 12061. 2 c 2.45 6.15E- 01 2.9 LYM30 11912. 7 H 13.1 13 1.73E- 01 5.7
LYM1 11604. 4 c 2.50 6 6.22E01 5.3 LYM11 6 13202. 7 H 14.5 2 1.78E- 01 17
LYM14 12051. 1 c 2.47 5 6.44E01 4 LYM10 3 12713. 5 H 16.2 34 1.81E- 01 30.8
LYM31 11924. 4 c 2.45 6 6.45E01 3.2 LYM66 11954. 4 H 16.5 04 1.98E- 01 33
LYM7 11594. 2 c 2.51 9 6.45E01 5.8 LYM66 11953. 6 H 13.0 82 2.10E01 5.4
LYM34 11903. 2 c 2.52 5 6.69E01 6.1 LYM12 11872. 1 H 19.1 53 2.18E01 54.3
LYM67 11783. 5 c 2.56 3 7.21E- 01 7.6 LYM95 12124. 4 H 14.5 08 2.21E01 16.9
LYM68 11942. 3 c 2.56 9 7.32E01 7.9 LYM66 11955. 2 H 14.1 24 2.35E01 13.8
LYM53 11842. 4 c 2.58 1 7.49E01 8.4 LYM31 11924. 4 H 14.2 78 2.42E01 15
LYM17 11683. 3 c 2.40 6 8.49E01 1.1 LYM95 12121. 2 H 17.1 35 3.06E01 38.1
LYM30 11913. 4 c 2.45 6 8.69E01 3.2 LYM69 11852. 2 H 14.5 17 3.11E- 01 17
LYM69 11852. 2 c 2.42 5 8.75E01 1.9 LYM14 12051. 4 H 14.2 54 3.15E- 01 14.8
LYM51 11891. 1 c 2.43 8 8.88E01 2.4 LYM12 11871. 1 H 16.2 36 3.18E- 01 30.8
LYM44 11884. 3 c 2.41 3 9.00E01 1.3 LYM43 11791. 4 H 13.3 52 3.60E01 7.6
LYM1 11602. 6 c 2.38 8 9.61E01 0.3 LYM10 3 12712. 8 H 14.0 75 4.03E01 13.4
LYM8 11982. 7 c 2.39 4 9.68E01 0.6 LYM23 9 13044. 8 H 13.8 81 4.35E01 11.8
LYM14 12054. 2 c 2.38 8 9.72E01 0.3 LYM62 12023. 2 H 13.4 79 4.46E01 8.6
LYM10 11741. 2 c 2.38 8 9.76E01 0.3 LYM23 2 13024. 6 H 13.4 9 4.54E01 8.7
212
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11632. 2 C 2.38 1 9.97E01 0 LYM67 11782. 4 H 14.2 03 4.80E01 14.4
CONTR OL c 2.38 1 0 LYM30 11912. 6 H 13.8 85 4.95E01 11.9
LYM9 11632. 1 D 0.63 7.73E04 26.2 LYM15 6 12963. 1 H 13.6 92 5.55E01 10.3
LYM57 12013. 1 D 0.60 4 2.91E03 21.1 LYM23 2 13024. 7 H 15.4 09 5.68E01 24.1
LYM30 11912. 6 D 0.59 6.70E03 18.3 LYM43 11791. 5 H 12.7 38 5.74E01 2.6
LYM35 11812. 3 D 0.57 4 1.51E02 15.1 LYM99 12243. 2 H 13.0 41 5.75E01 5.1
LYM9 11633. 7 D 0.56 4 7.87E02 13 LYM12 8 12641. 1 H 13.4 74 6.12E01 8.6
LYM10 11744. 1 D 0.58 9.91E02 16.2 LYM12 11873. 4 H 12.8 38 6.27E01 3.4
LYM10 11741. 2 D 0.54 4 9.99E02 9.1 LYM26 11824. 5 H 14.9 28 6.29E01 20.3
LYM57 12012. 4 D 0.54 1 1.20E01 8.5 LYM10 3 12711. 8 H 12.7 5 6.58E01 2.7
LYM31 11924. 4 D 0.56 7 1.79E01 13.5 LYM24 12064. 1 H 13.6 85 6.61E01 10.3
LYM1 11602. 6 D 0.54 1 1.97E01 8.5 LYM26 11821. 2 H 13.6 51 6.78E01 10
LYM1 11603. 2 D 0.58 1 2.09E01 16.4 LYM11 6 13204. 4 H 14.2 29 7.49E01 14.6
LYM51 11891. 1 D 0.54 3 2.39E01 8.7 LYM43 11793. 2 H 13.0 44 8.21E01 5.1
LYM13 11771. 9 D 0.53 8 2.66E01 7.8 LYM14 5 12951. 9 H 12.4 89 8.72E01 0.6
LYM53 11842. 4 D 0.58 6 3.05E01 17.5 LYM30 11913. 5 H 12.8 46 8.73E01 3.5
LYM35 11813. 5 D 0.55 8 3.13E01 11.8 LYM30 11913. 4 H 12.6 58 8.85E01 2
LYM13 11771. 6 D 0.52 4 3.24E01 5 LYM62 12023. 5 H 12.4 88 8.95E01 0.6
LYM14 12051. 4 D 0.56 5 3.33E01 13.3 LYM28 5 12734. 9 H 12.5 63 9.45E01 1.2
LYM69 11852. 2 D 0.53 3 3.41E01 6.8 LYM10 3 12712. 5 H 12.4 58 9.73E01 0.4
LYM66 11953. 6 D 0.53 6 3.86E01 7.4 CONTR OL H 12.4 12 0
LYM57 12012. 6 D 0.60 1 3.94E01 20.5 LYM12 11872. 1 J 0.05 1.96E04 59.7
LYM1 11604. 4 D 0.59 1 4.48E01 18.5 LYM11 6 13202. 12 J 0.04 6 3.31E04 47.1
LYM14 12051. 1 D 0.54 4.53E01 8.3 LYM20 11711. 2 J 0.04 5 6.36E04 44.3
LYM34 11902. 2 D 0.56 2 4.60E01 12.6 LYM12 8 12641. 5 J 0.04 4 7.56E04 40.5
LYM2 11695. 1 D 0.54 2 4.83E01 8.6 LYM28 5 12733. 9 J 0.04 5 1.31E03 43.5
213
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM31 11923. 4 D 0.54 6 5.90E01 9.3 LYM23 8 12764. 8 J 0.04 2 4.59E03 34.9
LYM69 11851. 2 D 0.51 6 6.13E- 01 3.3 LYM26 11824. 1 J 0.04 2 7.07E03 33.7
LYM12 11872. 1 D 0.53 6.82E01 6.2 LYM23 9 13042. 9 J 0.04 1 8.56E03 31.8
LYM7 11594. 2 D 0.53 6.83E01 6.2 LYM10 3 12713. 5 J 0.04 2 9.55E03 34
LYM21 11674. 5 D 0.51 6.94E01 2.3 LYM99 12243. 1 J 0.03 9 1.57E02 26.4
LYM68 11942. 3 D 0.53 8 7.30E01 7.7 LYM12 11871. 1 J 0.04 1 1.61E02 31
LYM53 11844. 2 D 0.50 8 7.44E01 1.7 LYM67 11782. 6 J 0.04 1.77E02 28.2
LYM35 11811. 3 D 0.52 9 7.70E01 6.1 LYM11 6 13202. 7 J 0.04 2.12E02 28.6
LYM24 12061. 2 D 0.50 8 7.91E01 1.9 LYM24 12061. 4 J 0.04 2.32E02 28.1
LYM51 11893. 4 D 0.51 3 8.07E01 2.9 LYM26 11824. 6 J 0.03 9 2.72E02 25.9
LYM34 11903. 2 D 0.53 5 8.16E- 01 7.1 LYM12 8 12641. 3 J 0.03 9 3.65E02 25.4
LYM1 11601. 1 D 0.51 5 8.25E01 3.2 LYM26 11824. 3 J 0.03 9 4.30E02 23.4
LYM30 11913. 4 D 0.50 7 9.38E01 1.6 LYM66 11954. 4 J 0.03 8 4.56E02 22.5
LYM43 11791. 4 D 0.5 9.64E01 0.2 LYM10 3 12712. 8 J 0.03 8 5.16E- 02 22.9
CONTR OL D 0.49 9 0 LYM95 12121. 2 J 0.03 9 5.69E02 23.8
LYM35 11811. 3 E 10 1.23E02 7.1 LYM24 12064. 1 J 0.03 9 6.86E02 23.9
LYM10 11744. 1 E 10.3 13 2.53E02 10.4 LYM23 2 13024. 7 J 0.04 8.05E02 28.4
LYM30 11912. 6 E 9.85 7 8.06E02 5.6 LYM23 2 13024. 6 J 0.03 8 8.34E02 20.4
LYM34 11902. 2 E 9.75 1.25E01 4.4 LYM14 12051. 4 J 0.03 7 9.99E02 19.7
LYM69 11851. 2 E 9.68 8 1.30E01 3.8 LYM12 11871. 3 J 0.03 7 1.14E01 18.1
LYM69 11852. 2 E 10.1 88 1.53E01 9.1 LYM30 11912. 6 J 0.03 7 1.23E01 18.6
LYM9 11632. 1 E 10.1 25 2.33E01 8.4 LYM23 9 13044. 8 J 0.03 7 1.34E01 17.6
LYM1 11604. 4 E 9.62 5 2.62E01 3.1 LYM31 11924. 4 J 0.03 6 1.64E01 15.9
LYM13 11772. 1 E 9.56 3 3.10E- 01 2.4 LYM15 6 12963. 1 J 0.03 6 1.70E- 01 15.9
LYM12 11872. 1 E 9.5 4.38E01 1.7 LYM23 8 12763. 7 J 0.03 6 1.78E- 01 14.5
LYM26 11824. 6 E 9.62 5 4.45E01 3.1 LYM53 11841. 1 J 0.03 6 1.78E- 01 14.9
214
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 13 11771. 9 E 9.68 8 4.47E01 3.8 LYM 11 6 13204. 4 J 0.03 8 1.81E01 22.8
LYM 14 12051. 4 E 9.75 4.53E01 4.4 LYM20 11716. 5 J 0.03 6 1.95E01 14.5
LYM37 11801. 1 E 9.56 3 4.57E01 2.4 LYM26 11821. 2 J 0.03 6 2.34E01 14.6
LYM9 11633. 7 E 9.56 3 4.57E01 2.4 LYM26 11824. 5 J 0.03 7 2.36E01 17.1
LYM35 11812. 3 E 9.81 3 4.59E01 5.1 LYM 12 8 12641. 1 J 0.03 5 3.24E01 11.7
LYM 14 12054. 2 E 9.5 5.11E01 1.7 LYM31 11923. 4 J 0.03 5 3.32E01 10.6
LYM53 11842. 4 E 9.81 3 5.48E01 5.1 LYM53 11843. 2 J 0.03 4 3.70E01 9.8
LYM21 11674. 5 E 9.75 6.27E01 4.4 LYM69 11852. 2 J 0.03 4 3.93E01 9.1
LYM1 11601. 1 E 9.43 8 6.42E01 1.1 LYM67 11782. 4 J 0.03 4 4.05E01 9
LYM 14 12051. 1 E 9.43 8 6.42E01 1.1 LYM 10 3 12712. 5 J 0.03 4 4.13E01 9.1
LYM 15 11611. 3 E 9.43 8 6.42E01 1.1 LYM30 11913. 5 J 0.03 4 4.32E01 9.6
LYM53 11844. 2 E 9.43 8 6.42E01 1.1 LYM88 12193. 1 J 0.03 4 4.41E01 8.1
LYM35 11811. 2 E 9.5 6.51E01 1.7 LYM 10 3 12711. 8 J 0.03 4 4.68E01 7.8
LYM37 11803. 2 E 9.5 6.51E01 1.7 LYM99 12244. 2 J 0.03 4 4.71E01 7.7
LYM30 11913. 4 E 9.75 6.79E01 4.4 LYM95 12124. 4 J 0.03 4 4.71E01 7.6
LYM34 11903. 2 E 9.43 8 7.32E01 1.1 LYM31 11921. 3 J 0.03 3 5.04E01 7.3
LYM 19 11751. 4 E 9.5 7.45E01 1.7 LYM66 11955. 2 J 0.03 3 5.27E01 6.6
LYM1 11602. 6 E 9.37 5 8.76E01 0.4 LYM30 11912. 7 J 0.03 3 5.60E01 6.4
LYM57 12012. 6 E 9.43 8 8.89E01 1.1 LYM62 12023. 2 J 0.03 3 5.61E01 6.2
LYM51 11891. 1 E 9.37 5 9.39E01 0.4 LYM20 11716. 3 J 0.03 3 5.84E01 6.4
CONTR OL E 9.33 7 0 LYM30 11913. 4 J 0.03 3 6.20E01 5.8
LYM57 12012. 4 F 0.80 6 7.51E02 8.8 LYM23 8 12762. 8 J 0.03 3 6.21E01 5.6
LYM35 11811. 3 F 0.83 2.97E01 12.1 LYM23 8 12763. 5 J 0.03 3 6.27E01 5.3
LYM53 11842. 4 F 0.78 7 3.26E01 6.2 LYM 15 6 12961. 9 J 0.03 3 6.33E01 5.1
LYM 14 12051. 4 F 0.84 6 3.32E01 14.3 LYM57 12012. 2 J 0.03 3 6.41E01 5.1
LYM35 11813. 5 F 0.77 7 3.52E01 4.9 LYM 14 5 12951. 9 J 0.03 3 6.87E01 4.4
215
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM68 11942. 3 F 0.78 6 3.74E01 6.2 LYM 12 11873. 4 J 0.03 2 7.45E01 3.6
LYM30 11912. 6 F 0.80 5 4.37E01 8.6 LYM20 11712. 2 J 0.03 2 7.62E01 3.5
LYM51 11891. 1 F 0.76 4 4.68E01 3.1 LYM41 11831. 5 J 0.03 2 7.96E01 2.8
LYM9 11632. 1 F 0.76 9 5.87E01 3.8 LYM 10 3 12714. 6 J 0.03 2 8.74E01 1.9
LYM9 11633. 7 F 0.76 5.93E01 2.6 LYM28 5 12734. 9 J 0.03 2 8.76E01 1.8
LYM 13 11771. 6 F 0.76 1 6.04E01 2.7 LYM23 9 13044. 7 J 0.03 2 9.02E01 1.4
LYM 13 11771. 9 F 0.76 6.32E01 2.7 LYM82 12201. 1 J 0.03 2 9.28E01 0.9
LYM37 11801. 1 F 0.75 8 6.33E01 2.3 LYM66 11953. 6 J 0.03 1 9.36E01 0.8
LYM7 11594. 2 F 0.75 9 6.93E01 2.5 LYM23 8 12761. 6 J 0.03 1 9.94E01 0.1
LYM57 12012. 6 F 0.76 1 7.81E01 2.8 LYM24 12062. 3 J 0.03 1 9.97E01 0
LYM57 12013. 1 F 0.75 9 8.06E01 2.5 CONTR OL J 0.03 1 0
LYM35 11811. 2 F 0.75 8.65E01 1.2 LYM26 11824. 3 K 0.68 6 7.37E03 43.8
LYM 14 12051. 1 F 0.74 8 8.75E01 0.9 LYM69 11852. 2 K 0.65 9 2.22E02 38.2
LYM 10 11744. 1 F 0.74 7 8.99E01 0.9 LYM 12 8 12641. 1 K 0.64 1 3.49E02 34.5
LYM34 11903. 2 F 0.75 7 9.24E01 2.2 LYM95 12121. 2 K 0.64 1 3.71E02 34.4
LYM1 11604. 4 F 0.74 5 9.30E01 0.5 LYM24 12061. 4 K 0.63 3 4.62E02 32.8
CONTR OL F 0.74 1 0 LYM 14 12051. 4 K 0.62 7 5.47E02 31.5
LYM37 11801. 1 G 11.9 78 9.54E04 26.2 LYM 12 8 12642. 1 K 0.63 5 5.90E02 33.2
LYM 19 11754. 1 G 10.5 3 1.26E01 11 LYM 12 8 12641. 5 K 0.62 3 7.60E02 30.6
LYM35 11813. 5 G 10.2 83 1.29E01 8.4 LYM 11 6 13202. 12 K 0.60 3 8.80E02 26.5
LYM9 11633. 2 G 10.2 94 1.30E01 8.5 LYM23 8 12764. 8 K 0.60 8 8.89E02 27.5
LYM68 11942. 3 G 10.1 96 1.75E01 7.4 LYM30 11912. 6 K 0.60 5 9.08E02 26.8
LYM4 11706. 5 G 10.3 3 2.38E01 8.8 LYM27 7 13103. 1 K 0.60 2 9.87E02 26.1
LYM35 11811. 3 G 10.9 31 2.53E01 15.2 LYM26 11824. 1 K 0.59 5 1.15E01 24.7
LYM 19 11752. 2 G 10.0 07 3.09E01 5.5 LYM28 5 12733. 9 K 0.59 7 1.19E01 25.2
LYM22 11761. 3 G 10.1 19 3.11E01 6.6 LYM43 11791. 4 K 0.59 6 1.21E01 25
216
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11801. 2 G 10.8 59 3.30E01 14.4 LYM62 12023. 5 K 0.59 3 1.29E01 24.3
LYM43 11791. 4 G 10.4 73 3.51E01 10.4 LYM 12 11873. 4 K 0.59 2 1.35E01 24.2
LYM43 11791. 5 G 10.5 32 3.81E01 11 LYM 11 6 13204. 4 K 0.60 7 1.36E01 27.4
LYM7 11594. 2 G 10.0 52 4.96E01 5.9 LYM30 11913. 4 K 0.59 3 1.53E01 24.3
LYM20 11716. 5 G 10.1 04 5.90E01 6.5 LYM 12 1 13212. 6 K 0.58 4 1.56E01 22.4
LYM8 11983. 1 G 9.74 8 5.93E01 2.7 LYM28 5 12734. 7 K 0.6 1.70E01 25.9
LYM7 11591. 2 G 9.77 1 6.16E01 3 LYM53 11842. 4 K 0.58 1 1.70E01 21.9
LYM67 11781. 5 G 9.71 8 6.39E01 2.4 LYM95 12124. 4 K 0.57 4 1.84E01 20.4
LYM62 12023. 4 G 9.72 3 6.48E01 2.5 LYM20 11711. 2 K 0.58 1 1.90E01 21.7
LYM 16 11624. 4 G 9.76 1 6.89E01 2.9 LYM 12 8 12641. 3 K 0.56 9 2.06E01 19.3
LYM9 11634. 5 G 9.75 3 7.05E01 2.8 LYM62 12023. 2 K 0.57 7 2.14E01 21
LYM53 11842. 4 G 9.67 3 7.13E01 1.9 LYM 14 5 12953. 5 K 0.57 1 2.18E01 19.7
LYM 12 11874. 1 G 9.65 5 7.33E01 1.7 LYM53 11841. 2 K 0.56 8 2.21E01 19
LYM37 11803. 2 G 9.66 3 7.61E01 1.8 LYM28 5 12734. 9 K 0.57 6 2.21E01 20.8
LYM43 11791. 2 G 9.67 6 8.13E01 2 LYM23 2 13024. 4 K 0.57 8 2.36E01 21.2
LYM35 11811. 2 G 9.59 8 8.21E01 1.1 LYM 10 3 12712. 5 K 0.57 1 2.39E01 19.7
LYM62 12023. 7 G 9.59 2 8.31E01 1.1 LYM23 2 13024. 6 K 0.56 6 2.45E01 18.6
LYM68 11943. 2 G 9.65 2 8.34E01 1.7 LYM53 11841. 1 K 0.56 8 2.50E01 19.2
LYM 15 11612. 3 G 9.59 8.47E01 1.1 LYM99 12243. 1 K 0.57 6 2.57E01 20.8
LYM 19 11753. 4 G 9.66 1 8.70E01 1.8 LYM24 12064. 1 K 0.56 8 2.60E01 19
LYM67 11782. 5 G 9.59 4 9.27E01 1.1 LYM 11 0 12923. 8 K 0.55 9 2.60E01 17.2
LYM2 11693. 3 G 9.59 3 9.33E01 1.1 LYM66 11954. 4 K 0.56 5 2.60E01 18.4
LYM43 11793. 2 G 9.56 9 9.71E01 0.8 LYM 10 3 12713. 5 K 0.56 5 2.61E01 18.6
LYM44 11882. 1 G 9.52 9 9.82E01 0.4 LYM 12 11871. 1 K 0.57 2.69E01 19.5
LYM 14 12051. 4 G 9.50 1 9.83E01 0.1 LYM99 12241. 1 K 0.55 8 2.70E01 17.1
LYM 13 11773. 2 G 9.50 1 9.83E01 0.1 LYM82 12201. 1 K 0.56 2.74E01 17.5
217
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 11614. 4 G 9.49 3 9.97E01 0 LYM31 11923. 4 K 0.56 4 2.76E01 18.2
CONTR OL G 9.49 0 LYM99 12243. 2 K 0.55 9 2.99E01 17.2
LYM9 11632. 1 H 33.9 14 2.21E04 36.9 LYM 14 5 12954. 8 K 0.55 4 3.06E01 16.1
LYM57 12013. 1 H 29.5 79 9.76E03 19.4 LYM66 11955. 2 K 0.55 7 3.10E- 01 16.7
LYM35 11812. 3 H 29.2 04 1.31E02 17.9 LYM28 4 12884. 6 K 0.55 4 3.10E- 01 16.1
LYM57 12012. 4 H 27.6 26 1.08E- 01 11.5 LYM23 2 13024. 7 K 0.55 4 3.11E- 01 16.1
LYM 10 11744. 1 H 31.6 43 1.14E- 01 27.7 LYM23 9 13044. 8 K 0.55 5 3.13E- 01 16.4
LYM35 11813. 5 H 27.9 93 1.18E- 01 13 LYM43 11793. 2 K 0.56 3 3.17E- 01 18.1
LYM 10 11741. 2 H 26.9 64 1.50E- 01 8.8 LYM 14 12051. 1 K 0.55 3 3.22E01 15.9
LYM69 11852. 2 H 27.5 16 1.79E01 11 LYM 11 6 13202. 7 K 0.55 2 3.34E01 15.7
LYM9 11633. 7 H 27.9 59 1.85E- 01 12.8 LYM95 12124. 5 K 0.54 8 3.45E01 14.9
LYM1 11602. 6 H 27.9 65 1.95E- 01 12.9 LYM 12 1 13211. 8 K 0.54 6 3.49E01 14.4
LYM1 11603. 2 H 28.2 46 2.79E01 14 LYM24 12062. 3 K 0.54 7 3.50E01 14.8
LYM30 11912. 6 H 28.1 63 2.82E01 13.6 LYM67 11782. 5 K 0.54 6 3.51E- 01 14.5
LYM 14 12051. 4 H 29.8 76 3.41E- 01 20.6 LYM53 11843. 2 K 0.54 5 3.52E01 14.3
LYM51 11891. 1 H 27.8 05 3.42E01 12.2 LYM 11 0 12924. 5 K 0.54 8 3.55E01 15
LYM1 11604. 4 H 30.5 41 3.49E01 23.2 LYM99 12244. 2 K 0.54 9 3.59E01 15.1
LYM53 11842. 4 H 30.3 6 3.95E01 22.5 LYM 12 11871. 3 K 0.54 7 3.66E01 14.6
LYM31 11924. 4 H 28.2 44 4.58E01 14 LYM99 12244. 1 K 0.54 9 3.66E01 15.1
LYM57 12012. 6 H 29.9 77 4.61E01 21 LYM27 1 12724. 7 K 0.54 9 3.69E01 15.1
LYM 13 11771. 9 H 26.7 32 4.87E01 7.9 LYM26 11824. 5 K 0.55 7 3.69E01 16.8
LYM34 11902. 2 H 27.8 8 5.04E01 12.5 LYM30 11913. 5 K 0.54 4 3.88E01 14.1
LYM 14 12051. 1 H 26.6 48 5.19E- 01 7.5 LYM67 11781. 5 K 0.54 3.88E01 13.3
LYM21 11674. 5 H 25.8 58 5.35E01 4.3 LYM23 8 12762. 8 K 0.54 4 3.90E01 14.1
LYM35 11811. 3 H 28.1 52 5.73E01 13.6 LYM62 12023. 4 K 0.54 4 3.93E01 14.1
LYM2 11695. 1 H 25.9 7 6.93E01 4.8 LYM 14 12052. 5 K 0.54 7 3.97E01 14.8
218
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM69 11851. 2 H 25.4 99 6.95E01 2.9 LYM31 11921. 3 K 0.54 4 4.06E01 14
LYM7 11594. 2 H 26.0 64 7.54E01 5.2 LYM26 11821. 2 K 0.54 4.06E01 13.3
LYM 13 11771. 6 H 25.2 04 7.64E01 1.7 LYM43 11792. 2 K 0.54 4.06E01 13.3
LYM 12 11872. 1 H 26.3 1 7.68E01 6.2 LYM62 12022. 4 K 0.54 4.18E01 13.3
LYM31 11923. 4 H 26.1 15 7.78E01 5.4 LYM27 1 12721. 8 K 0.53 6 4.26E01 12.3
LYM34 11903. 2 H 27.3 51 7.84E01 10.4 LYM56 13112. 6 K 0.53 6 4.32E01 12.4
LYM51 11893. 4 H 25.7 67 7.97E01 4 LYM 14 5 12951. 9 K 0.53 5 4.47E01 12.2
LYM66 11953. 6 H 25.4 92 8.09E01 2.9 LYM 11 0 12923. 5 K 0.53 4 4.49E01 12.1
LYM68 11942. 3 H 26.0 14 8.37E01 5 LYM 11 0 12921. 7 K 0.53 7 4.51E01 12.6
LYM30 11913. 4 H 26.0 41 8.38E01 5.1 LYM 12 11872. 1 K 0.53 6 4.52E01 12.3
LYM1 11601. 1 H 25.3 77 8.67E01 2.4 LYM20 11711. 3 K 0.53 3 4.57E01 11.8
LYM24 12061. 2 H 25.0 11 9.20E01 0.9 LYM57 12012. 2 K 0.53 4 4.71E01 11.9
LYM1 11602. 1 H 24.9 92 9.73E01 0.9 LYM88 12193. 1 K 0.52 9 4.85E01 11
LYM53 11844. 2 H 24.8 31 9.74E01 0.2 LYM66 11953. 6 K 0.53 4.94E01 11.1
CONTR OL H 24.7 8 0 LYM31 11924. 4 K 0.53 5.07E01 11.1
LYM9 11632. 1 J 0.07 9 1.51E- 01 24.8 LYM67 11782. 4 K 0.53 2 5.13E- 01 11.5
LYM57 12013. 1 J 0.07 8 1.83E- 01 23 LYM28 5 12731. 4 K 0.52 5 5.18E- 01 10
LYM57 12012. 6 J 0.07 7 2.25E01 21.2 LYM23 9 13041. 1 K 0.52 3 5.35E01 9.7
LYM30 11912. 6 J 0.07 6 2.26E01 20.6 LYM24 12063. 3 K 0.52 1 5.41E- 01 9.2
LYM53 11842. 4 J 0.07 6 2.65E01 19.4 LYM 15 6 12963. 1 K 0.52 2 5.54E01 9.4
LYM1 11604. 4 J 0.07 5 2.97E01 18.6 LYM 12 11874. 1 K 0.52 1 5.55E01 9.2
LYM1 11603. 2 J 0.07 4 3.28E01 16.8 LYM27 1 12724. 9 K 0.52 2 5.59E01 9.5
LYM 10 11744. 1 J 0.07 3 3.53E01 15.7 LYM 10 3 12713. 7 K 0.52 5.64E01 9.1
LYM31 11924. 4 J 0.07 2 3.90E01 14.6 LYM 14 12054. 2 K 0.51 8 5.72E01 8.6
LYM 14 12051. 4 J 0.07 2 4.24E01 13.6 LYM57 12013. 3 K 0.51 9 5.89E01 8.9
LYM35 11812. 3 J 0.07 2 4.25E01 13.3 LYM31 11923. 1 K 0.51 5 6.17E- 01 7.9
219
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11633. 7 J 0.07 1 4.52E01 12.5 LYM23 8 12761. 6 K 0.51 8 6.24E01 8.5
LYM34 11902. 2 J 0.07 1 4.57E01 12.9 LYM23 2 13024. 5 K 0.51 5 6.30E01 7.9
LYM35 11813. 5 J 0.07 1 4.85E01 11.8 LYM56 13112. 7 K 0.51 2 6.37E01 7.3
LYM57 12012. 4 J 0.07 5.22E01 10.3 LYM26 11824. 6 K 0.51 6.47E01 6.9
LYM51 11891. 1 J 0.06 9 5.53E01 9.8 LYM 10 3 12712. 8 K 0.51 1 6.48E01 7.2
LYM2 11695. 1 J 0.06 9 5.59E01 9.8 LYM41 11831. 1 K 0.50 9 6.63E01 6.8
LYM31 11923. 4 J 0.06 9 5.64E01 9.9 LYM27 7 13101. 1 K 0.50 8 6.88E01 6.6
LYM 13 11771. 9 J 0.06 9 5.93E01 9 LYM56 13111. 7 K 0.50 9 6.88E01 6.7
LYM68 11942. 3 J 0.06 9 5.94E01 9.5 LYM28 4 12884. 7 K 0.50 6 6.90E01 6.2
LYM7 11594. 2 J 0.06 9 5.99E01 8.8 LYM62 12022. 1 K 0.50 4 7.05E01 5.7
LYM66 11953. 6 J 0.06 9 6.12E01 8.5 LYM30 11912. 7 K 0.50 7 7.06E01 6.3
LYM 14 12051. 1 J 0.06 9 6.16E01 8.5 LYM41 11833. 1 K 0.50 1 7.36E01 5.1
LYM 10 11741. 2 J 0.06 8 6.23E01 8.2 LYM 10 3 12714. 6 K 0.50 2 7.61E01 5.3
LYM1 11602. 6 J 0.06 8 6.34E01 7.8 LYM51 11891. 1 K 0.5 7.77E01 4.8
LYM 12 11872. 1 J 0.06 8 6.36E01 8 LYM23 9 13042. 9 K 0.49 8 7.78E01 4.5
LYM69 11852. 2 J 0.06 8 6.55E01 7.3 LYM24 12061. 2 K 0.49 8 7.80E01 4.5
LYM35 11811. 3 J 0.06 8 6.90E01 6.8 LYM 11 6 13201. 8 K 0.49 5 8.03E01 3.9
LYM34 11903. 2 J 0.06 8 7.08E01 6.9 LYM66 11953. 1 K 0.49 6 8.07E01 3.9
LYM 13 11771. 6 J 0.06 7 7.11E01 6.2 LYM27 1 12723. 2 K 0.49 7 8.18E01 4.3
LYM69 11851. 2 J 0.06 6 7.59E01 5.1 LYM27 7 13101. 8 K 0.49 5 8.23E01 3.9
LYM1 11601. 1 J 0.06 5 8.32E01 3.5 LYM 12 5 12934. 7 K 0.49 4 8.28E01 3.6
LYM51 11893. 4 J 0.06 5 8.37E01 3.4 LYM 12 1 13214. 3 K 0.49 3 8.30E01 3.4
LYM43 11791. 4 J 0.06 5 8.52E01 3.1 LYM88 12194. 2 K 0.49 2 8.37E01 3.2
LYM24 12061. 2 J 0.06 5 8.93E01 2.2 LYM20 11716. 5 K 0.49 8.59E01 2.8
LYM53 11844. 2 J 0.06 4 9.21E01 1.6 LYM57 12013. 5 K 0.48 8 8.85E01 2.3
LYM30 11913. 4 J 0.06 4 9.24E01 1.6 LYM66 11952. 2 K 0.48 8 8.89E01 2.4
220
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 11612. 2 J 0.06 4 9.40E01 1.3 LYM 15 6 12961. 9 K 0.48 7 8.92E01 2.1
LYM21 11674. 5 J 0.06 4 9.43E01 1.2 LYM67 11783. 5 K 0.48 5 9.13E01 1.7
CONTR OL J 0.06 3 0 LYM23 2 13022. 1 K 0.48 5 9.18E01 1.8
LYM57 12012. 4 K 0.72 4 2.06E01 19.4 LYM67 11782. 6 K 0.48 3 9.35E01 1.3
LYM37 11803. 2 K 0.71 1 2.92E01 17.3 LYM 14 5 12954. 7 K 0.48 2 9.41E01 1.2
LYM26 11824. 6 K 0.69 9 3.16E01 15.3 LYM 12 5 12932. 6 K 0.48 3 9.42E01 1.4
LYM31 11921. 3 K 0.69 6 3.36E01 14.9 LYM 12 5 12933. 8 K 0.48 1 9.60E01 0.8
LYM41 11831. 1 K 0.69 5 3.63E01 14.6 LYM28 5 12732. 5 K 0.48 9.74E01 0.6
LYM62 12023. 7 K 0.68 4 4.19E01 12.8 LYM 15 6 12961. 7 K 0.47 8 9.91E01 0.2
LYM62 12023. 2 K 0.69 9 4.20E01 15.4 CONTR OL K 0.47 7 0
LYM37 11801. 1 K 0.68 1 4.37E01 12.4 LYM 12 8 12641. 5 L 2.44 9 2.11E04 59.2
LYM35 11811. 3 K 0.68 4.38E01 12.2 LYM 11 6 13202. 12 L 2.37 5 4.83E04 54.4
LYM69 11852. 2 K 0.67 6 4.46E01 11.6 LYM 12 11872. 1 L 2.46 5 7.52E04 60.2
LYM 16 11622. 4 K 0.68 3 4.47E01 12.6 LYM28 5 12733. 9 L 2.38 9.95E04 54.7
LYM21 11671. 2 K 0.67 4 4.59E01 11.1 LYM99 12243. 1 L 2.24 6 1.78E03 46
LYM53 11841. 2 K 0.67 4 4.66E01 11.1 LYM20 11711. 2 L 2.20 3 4.00E03 43.2
LYM24 12062. 3 K 0.66 8 5.01E01 10.2 LYM26 11824. 1 L 2.17 1 5.72E03 41.1
LYM51 11892. 1 K 0.66 9 5.09E01 10.3 LYM 12 8 12641. 3 L 2.15 6 5.90E03 40.1
LYM 10 11744. 1 K 0.66 8 5.14E01 10.1 LYM95 12121. 2 L 2.15 5 1.11E02 40.1
LYM34 11902. 2 K 0.66 6 5.18E01 9.9 LYM67 11782. 6 L 2.10 7 1.18E02 36.9
LYM 14 12054. 2 K 0.66 5 5.20E01 9.7 LYM66 11954. 4 L 2.09 1 1.19E02 35.9
LYM67 11782. 6 K 0.66 5.62E01 8.9 LYM 12 11871. 1 L 2.08 8 2.29E02 35.7
LYM9 11632. 1 K 0.66 5.63E01 8.9 LYM24 12061. 4 L 2.04 4 2.38E02 32.9
LYM 15 11611. 3 K 0.65 9 6.00E01 8.7 LYM23 8 12764. 8 L 2.03 5 2.46E02 32.3
LYM4 11706. 5 K 0.65 5 6.01E01 8 LYM 10 3 12713. 5 L 2.06 5 2.84E02 34.2
LYM 12 11872. 1 K 0.65 6 6.03E01 8.3 LYM26 11824. 3 L 2.01 2.91E02 30.7
221
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM35 11812. 3 K 0.65 5 6.07E01 8 LYM26 11824. 6 L 1.98 3.86E02 28.7
LYM62 12022. 4 K 0.65 1 6.30E01 7.4 LYM23 9 13042. 9 L 1.97 7 4.34E02 28.5
LYM30 11912. 6 K 0.64 9 6.64E01 7 LYM53 11841. 1 L 1.97 1 4.77E02 28.1
LYM20 11716. 5 K 0.64 6 6.74E01 6.6 LYM88 12193. 1 L 1.93 6 5.80E02 25.8
LYM67 11781. 5 K 0.64 3 6.97E01 6 LYM 11 6 13202. 7 L 1.90 7 8.77E02 24
LYM4 11702. 3 K 0.64 7.22E01 5.6 LYM23 2 13024. 7 L 1.97 1 1.00E01 28.1
LYM69 11851. 2 K 0.63 9 7.23E01 5.4 LYM69 11852. 2 L 1.87 5 1.06E01 21.9
LYM68 11942. 2 K 0.64 7.29E01 5.6 LYM31 11923. 4 L 1.87 2 1.15E01 21.7
LYM35 11812. 4 K 0.64 3 7.31E01 6 LYM82 12201. 1 L 1.84 3 1.30E01 19.8
LYM7 11592. 1 K 0.64 7.32E01 5.6 LYM95 12124. 4 L 1.82 9 1.51E01 18.9
LYM30 11913. 4 K 0.64 1 7.33E01 5.8 LYM 10 3 12712. 8 L 1.84 1 1.53E01 19.6
LYM30 11913. 3 K 0.63 8 7.35E01 5.2 LYM30 11912. 6 L 1.84 2 1.64E01 19.7
LYM8 11982. 6 K 0.63 8 7.37E01 5.2 LYM 14 12051. 4 L 1.83 1.66E01 18.9
LYM2 11692. 3 K 0.64 1 7.40E01 5.8 LYM26 11824. 5 L 1.90 9 1.69E01 24.1
LYM4 11702. 1 K 0.63 4 7.62E01 4.5 LYM31 11924. 4 L 1.81 8 1.86E01 18.2
LYM41 11832. 2 K 0.63 1 7.80E01 4.1 LYM 12 11871. 3 L 1.81 4 1.86E01 17.9
LYM9 11633. 2 K 0.63 4 7.80E01 4.5 LYM24 12064. 1 L 1.81 4 2.15E01 17.9
LYM9 11634. 5 K 0.63 8.00E01 3.9 LYM 15 6 12963. 1 L 1.79 2 2.30E01 16.4
LYM9 11632. 2 K 0.63 8.04E01 3.9 LYM23 2 13024. 6 L 1.78 9 2.39E01 16.2
LYM53 11842. 4 K 0.63 1 8.07E01 4.1 LYM67 11782. 4 L 1.78 6 2.40E01 16.1
LYM68 11941. 3 K 0.62 9 8.08E01 3.7 LYM 11 6 13204. 4 L 1.85 9 2.45E01 20.8
LYM 13 11771. 9 K 0.62 9 8.13E01 3.7 LYM99 12244. 2 L 1.77 2 2.57E01 15.2
LYM57 12012. 2 K 0.62 6 8.34E01 3.3 LYM23 9 13044. 8 L 1.77 6 2.66E01 15.4
LYM21 11674. 1 K 0.62 4 8.48E01 2.9 LYM26 11821. 2 L 1.77 3 2.99E01 15.3
LYM34 11902. 4 K 0.62 4 8.48E01 2.9 LYM20 11716. 5 L 1.74 9 3.04E01 13.7
LYM41 11833. 1 K 0.62 4 8.52E01 2.9 LYM 12 8 12641. 1 L 1.76 3 3.04E01 14.6
222
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM1 11604. 4 K 0.62 8.86E01 2.3 LYM53 11843. 2 L 1.74 6 3.06E01 13.5
LYM9 11633. 7 K 0.62 8.87E01 2.3 LYM66 11955. 2 L 1.74 3.08E01 13.1
LYM 17 11683. 1 K 0.61 9 8.89E01 2.1 LYM62 12023. 2 L 1.73 5 3.31E- 01 12.7
LYM 15 11614. 4 K 0.61 8 9.03E01 1.9 LYM88 12194. 2 L 1.68 1 4.65E01 9.3
LYM20 11716. 3 K 0.61 8 9.05E01 1.9 LYM43 11791. 4 L 1.68 7 4.68E01 9.6
LYM62 12022. 2 K 0.61 6 9.13E01 1.7 LYM 12 11873. 4 L 1.65 8 5.55E01 7.8
LYM4 11705. 2 K 0.61 6 9.15E01 1.7 LYM30 11913. 5 L 1.66 7 5.55E01 8.3
LYM21 11674. 5 K 0.61 5 9.26E01 1.5 LYM30 11912. 7 L 1.65 2 5.73E01 7.4
LYM26 11824. 3 K 0.61 5 9.27E01 1.5 LYM30 11913. 4 L 1.64 4 6.15E- 01 6.8
LYM69 11854. 2 K 0.61 5 9.30E01 1.5 LYM 10 3 12711. 8 L 1.63 7 6.20E01 6.4
LYM67 11783. 4 K 0.61 1 9.57E01 0.8 LYM43 11793. 2 L 1.64 5 6.21E- 01 6.9
LYM37 11801. 2 K 0.61 1 9.57E01 0.8 LYM99 12243. 2 L 1.62 8 6.46E01 5.8
LYM67 11782. 5 K 0.61 9.67E01 0.6 LYM66 11953. 6 L 1.62 7 6.52E01 5.7
LYM62 12023. 4 K 0.61 9.70E01 0.6 LYM 10 3 12712. 5 L 1.62 9 6.58E01 5.9
LYM7 11594. 2 K 0.61 9.70E01 0.6 LYM28 5 12734. 9 L 1.60 8 7.44E01 4.5
LYM 16 11624. 4 K 0.60 9 9.77E01 0.4 LYM 14 5 12951. 9 L 1.59 3 7.83E01 3.5
LYM7 11591. 5 K 0.60 9 9.79E01 0.4 LYM 10 3 12714. 6 L 1.59 5 8.01E- 01 3.7
LYM31 11922. 3 K 0.60 8 9.89E01 0.2 LYM62 12023. 5 L 1.58 6 8.08E01 3.1
LYM8 11984. 1 K 0.60 6 1.00E +00 0 LYM23 8 12762. 8 L 1.58 7 8.13E- 01 3.1
CONTR OL K 0.60 6 0 LYM43 11791. 5 L 1.57 6 8.47E01 2.4
LYM9 11632. 1 L 4.46 4 4.79E02 36.6 LYM 15 6 12961. 9 L 1.57 8.76E01 2
LYM 10 11744. 1 L 4.16 6 1.32E- 01 27.5 LYM57 12012. 2 L 1.55 1 9.48E01 0.8
LYM53 11842. 4 L 4.03 6 2.03E01 23.5 LYM20 11716. 3 L 1.55 1 9.50E01 0.8
LYM1 11604. 4 L 4.02 6 2.08E01 23.2 LYM24 12062. 3 L 1.54 6 9.69E01 0.5
LYM57 12012. 6 L 3.96 2 2.47E01 21.3 CONTR OL L 1.53 9 0
LYM 14 12051. 4 L 3.94 1 2.56E01 20.6 LYM 12 8 12641. 5 M 0.30 6 5.45E04 53.9
223
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM57 12013. 1 L 3.92 9 2.56E01 20.2 LYM11 6 13202. 12 M 0.29 7 1.21E03 49.2
LYM35 11812. 3 L 3.81 4 3.35E01 16.7 LYM12 11872. 1 M 0.30 8 1.61E03 54.8
LYM30 11912. 6 L 3.73 6 4.19E01 14.3 LYM28 5 12733. 9 M 0.29 8 2.23E03 49.5
LYM31 11924. 4 L 3.73 8 4.20E01 14.4 LYM99 12243. 1 M 0.28 1 4.33E03 41.1
LYM57 12012. 4 L 3.71 3 4.26E01 13.6 LYM20 11711. 2 M 0.27 5 8.94E03 38.4
LYM35 11811. 3 L 3.73 4.30E01 14.2 LYM26 11824. 1 M 0.27 1 1.25E02 36.4
LYM1 11603. 2 L 3.70 5 4.48E01 13.4 LYM12 8 12641. 3 M 0.26 9 1.31E02 35.4
LYM9 11633. 7 L 3.67 4 4.69E01 12.4 LYM95 12121. 2 M 0.26 9 2.19E02 35.4
LYM51 11891. 1 L 3.68 4.70E01 12.6 LYM67 11782. 6 M 0.26 3 2.45E02 32.3
LYM35 11813. 5 L 3.67 7 4.70E01 12.5 LYM66 11954. 4 M 0.26 1 2.53E02 31.3
LYM34 11902. 2 L 3.68 7 4.71E01 12.8 LYM12 11871. 1 M 0.26 1 4.25E02 31.2
LYM1 11602. 6 L 3.67 1 4.75E01 12.3 LYM24 12061. 4 M 0.25 6 4.64E02 28.4
LYM69 11852. 2 L 3.63 4 5.13E01 11.2 LYM23 8 12764. 8 M 0.25 4 4.83E02 27.8
LYM34 11903. 2 L 3.60 5 5.97E01 10.3 LYM10 3 12713. 5 M 0.25 8 5.18E02 29.7
LYM13 11771. 9 L 3.54 1 6.32E01 8.4 LYM26 11824. 3 M 0.25 1 5.70E02 26.3
LYM10 11741. 2 L 3.51 8 6.56E01 7.7 LYM26 11824. 6 M 0.24 8 7.39E02 24.4
LYM12 11872. 1 L 3.50 7 6.78E01 7.3 LYM23 9 13042. 9 M 0.24 7 8.11E02 24.2
LYM14 12051. 1 L 3.50 4 6.80E01 7.2 LYM53 11841. 1 M 0.24 6 8.78E02 23.8
LYM7 11594. 2 L 3.49 3 6.89E01 6.9 LYM88 12193. 1 M 0.24 2 1.07E01 21.6
LYM31 11923. 4 L 3.44 1 7.61E01 5.3 LYM11 6 13202. 7 M 0.23 8 1.51E01 19.8
LYM2 11695. 1 L 3.43 3 7.69E01 5.1 LYM23 2 13024. 7 M 0.24 6 1.54E01 23.8
LYM68 11942. 3 L 3.44 7.72E01 5.3 LYM69 11852. 2 M 0.23 4 1.83E01 17.8
LYM30 11913. 4 L 3.43 5 7.78E01 5.1 LYM31 11923. 4 M 0.23 4 1.95E01 17.6
LYM51 11893. 4 L 3.40 2 8.13E01 4.1 LYM82 12201. 1 M 0.23 2.22E01 15.8
LYM69 11851. 2 L 3.39 1 8.26E01 3.8 LYM26 11824. 5 M 0.23 9 2.44E01 19.9
LYM21 11674. 5 L 3.38 5 8.32E01 3.6 LYM10 3 12712. 8 M 0.23 2.49E01 15.6
224
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11953. 6 L 3.36 6 8.62E01 3 LYM95 12124. 4 M 0.22 9 2.51E01 14.9
LYM1 11601. 1 L 3.33 6 9.04E01 2.1 LYM30 11912. 6 M 0.23 2.60E01 15.7
LYM13 11771. 6 L 3.32 4 9.20E01 1.7 LYM14 12051. 4 M 0.22 9 2.67E01 14.9
LYM24 12061. 2 L 3.30 4 9.49E01 1.1 LYM31 11924. 4 M 0.22 7 2.94E01 14.2
LYM1 11602. 1 L 3.28 8 9.72E01 0.6 LYM12 11871. 3 M 0.22 7 2.96E01 14
LYM7 11592. 1 L 3.26 9 9.97E01 0.1 LYM24 12064. 1 M 0.22 7 3.27E01 14
CONTR OL L 3.26 8 0 LYM11 6 13204. 4 M 0.23 2 3.38E01 16.8
LYM9 11632. 1 M 0.55 8 5.61E02 34.5 LYM15 6 12963. 1 M 0.22 4 3.54E01 12.6
LYM10 11744. 1 M 0.52 1 1.52E01 25.5 LYM23 2 13024. 6 M 0.22 4 3.65E01 12.4
LYM53 11842. 4 M 0.50 5 2.31E01 21.6 LYM67 11782. 4 M 0.22 3 3.66E01 12.2
LYM1 11604. 4 M 0.50 3 2.37E01 21.3 LYM99 12244. 2 M 0.22 2 3.92E01 11.3
LYM30 11912. 6 M 0.49 8 2.52E01 20.1 LYM23 9 13044. 8 M 0.22 2 3.98E01 11.6
LYM57 12012. 6 M 0.49 5 2.79E01 19.4 LYM26 11821. 2 M 0.22 2 4.31E01 11.4
LYM14 12051. 4 M 0.49 3 2.90E01 18.8 LYM12 8 12641. 1 M 0.22 4.42E01 10.8
LYM57 12013. 1 M 0.49 1 2.91E01 18.4 LYM20 11716. 5 M 0.21 9 4.53E01 9.9
LYM35 11812. 3 M 0.47 7 3.79E01 14.9 LYM53 11843. 2 M 0.21 8 4.57E01 9.7
LYM31 11924. 4 M 0.46 7 4.69E01 12.6 LYM66 11955. 2 M 0.21 8 4.64E01 9.3
LYM57 12012. 4 M 0.46 4 4.78E01 11.9 LYM62 12023. 2 M 0.21 7 4.90E01 9
LYM35 11811. 3 M 0.46 6 4.79E01 12.4 LYM43 11791. 4 M 0.21 1 6.50E01 6
LYM1 11603. 2 M 0.46 3 5.00E01 11.7 LYM88 12194. 2 M 0.21 6.56E01 5.6
LYM51 11891. 1 M 0.46 5.23E01 10.9 LYM30 11913. 5 M 0.20 8 7.36E01 4.7
LYM9 11633. 7 M 0.45 9 5.24E01 10.7 LYM12 11873. 4 M 0.20 7 7.49E01 4.2
LYM34 11902. 2 M 0.46 1 5.24E01 11.1 LYM30 11912. 7 M 0.20 7 7.70E01 3.8
LYM35 11813. 5 M 0.46 5.24E01 10.8 LYM43 11793. 2 M 0.20 6 8.08E01 3.4
LYM1 11602. 6 M 0.45 9 5.29E01 10.6 LYM30 11913. 4 M 0.20 5 8.09E01 3.3
LYM69 11852. 2 M 0.45 4 5.70E01 9.5 LYM10 3 12711. 8 M 0.20 5 8.25E01 2.8
225
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM34 11903. 2 M 0.45 1 6.52E01 8.6 LYM23 8 12763. 7 M 0.20 4 8.41E01 2.5
LYM13 11771. 9 M 0.44 3 6.95E01 6.7 LYM99 12243. 2 M 0.20 4 8.56E01 2.3
LYM10 11741. 2 M 0.44 7.21E01 6 LYM10 3 12712. 5 M 0.20 4 8.60E01 2.3
LYM12 11872. 1 M 0.43 8 7.42E01 5.7 LYM66 11953. 6 M 0.20 3 8.63E01 2.2
LYM14 12051. 1 M 0.43 8 7.44E01 5.6 LYM28 5 12734. 9 M 0.20 1 9.42E01 1
LYM7 11594. 2 M 0.43 7 7.55E01 5.3 LYM31 11921. 3 M 0.2 9.69E01 0.5
LYM31 11923. 4 M 0.43 8.29E01 3.7 LYM10 3 12714. 6 M 0.19 9 9.90E01 0.2
LYM68 11942. 3 M 0.43 8.37E01 3.7 LYM14 5 12951. 9 M 0.19 9 9.95E01 0.1
LYM2 11695. 1 M 0.42 9 8.38E01 3.5 CONTR OL M 0.19 9 0
LYM30 11913. 4 M 0.42 9 8.44E01 3.5 LYM11 6 13202. 12 N 0.25 5 2.10E05 39.1
LYM51 11893. 4 M 0.42 5 8.82E01 2.5 LYM12 11872. 1 N 0.26 3 2.76E04 43.6
LYM69 11851. 2 M 0.42 4 8.97E01 2.2 LYM12 8 12641. 5 N 0.24 1 3.00E04 31.6
LYM21 11674. 5 M 0.42 3 9.04E01 2 LYM20 11711. 2 N 0.23 4 6.41E04 28
LYM66 11953. 6 M 0.42 1 9.33E01 1.4 LYM23 8 12764. 8 N 0.23 6 7.16E04 29.2
LYM1 11601. 1 M 0.41 7 9.76E01 0.5 LYM26 11824. 1 N 0.23 4 1.33E03 28
LYM13 11771. 6 M 0.41 5 9.93E01 0.2 LYM12 8 12641. 3 N 0.23 2 1.75E03 26.7
CONTR OL M 0.41 5 0 LYM10 3 12713. 5 N 0.23 1 2.00E03 26.5
LYM9 11632. 1 N 0.36 4 3.31E01 10.1 LYM24 12061. 4 N 0.22 7 3.42E03 24.1
LYM30 11912. 6 N 0.36 3 3.56E01 9.8 LYM23 2 13024. 6 N 0.22 8 3.85E03 24.4
LYM53 11842. 4 N 0.36 3 3.57E01 10.1 LYM28 5 12733. 9 N 0.22 9 4.57E03 25
LYM57 12012. 4 N 0.35 7 4.27E01 8.1 LYM26 11824. 3 N 0.22 6 4.79E03 23.5
LYM35 11813. 5 N 0.35 6 4.55E01 7.8 LYM66 11954. 4 N 0.22 4 5.52E03 22.5
LYM35 11811. 3 N 0.35 7 4.59E01 8.1 LYM23 9 13042. 9 N 0.22 6 5.90E03 23.3
LYM57 12013. 1 N 0.35 5 4.83E01 7.5 LYM30 11912. 6 N 0.22 7 6.07E03 24
LYM14 12051. 4 N 0.35 2 5.51E01 6.5 LYM12 8 12641. 1 N 0.22 5 9.15E03 23.1
LYM9 11633. 7 N 0.34 9 5.80E01 5.6 LYM11 6 13202. 7 N 0.22 1 1.09E02 20.9
226
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM57 12012. 6 N 0.34 9 5.90E01 5.8 LYM31 11924. 4 N 0.22 1 1.24E02 21
LYM43 11791. 4 N 0.34 7 6.19E- 01 5.2 LYM12 11871. 1 N 0.22 6 1.29E02 23.3
LYM68 11942. 3 N 0.34 8 6.27E01 5.5 LYM14 12051. 4 N 0.22 1.51E02 20.4
LYM31 11924. 4 N 0.34 6 6.55E01 4.8 LYM24 12064. 1 N 0.22 6 1.54E02 23.5
LYM34 11902. 2 N 0.34 5 6.78E01 4.4 LYM10 3 12712. 8 N 0.21 9 1.66E02 19.4
LYM51 11891. 1 N 0.34 4 6.78E01 4.2 LYM53 11841. 1 N 0.21 9 1.67E- 02 19.7
LYM10 11744. 1 N 0.34 4 6.92E01 4.2 LYM95 12121. 2 N 0.22 1.74E02 20.4
LYM66 11953. 6 N 0.34 1 7.64E01 3.2 LYM30 11913. 5 N 0.22 4 1.83E02 22.5
LYM1 11604. 4 N 0.34 7.75E01 3.1 LYM31 11923. 4 N 0.21 7 2.07E02 18.9
LYM37 11801. 1 N 0.33 9 8.01E- 01 2.5 LYM23 2 13024. 7 N 0.23 5 2.12E02 28.2
LYM13 11771. 9 N 0.33 8 8.16E- 01 2.5 LYM99 12243. 1 N 0.22 2.16E02 20.1
LYM7 11594. 2 N 0.33 7 8.44E01 2.1 LYM23 9 13044. 8 N 0.21 7 2.68E02 18.4
LYM1 11603. 2 N 0.33 7 8.51E- 01 2 LYM26 11824. 6 N 0.21 7 2.69E02 18.4
LYM13 11771. 6 N 0.33 6 8.71E- 01 1.7 LYM11 6 13204. 4 N 0.23 3 2.78E02 27.6
LYM35 11812. 3 N 0.33 6 8.72E01 1.7 LYM12 11871. 3 N 0.21 8 3.06E02 18.9
LYM9 11633. 2 N 0.33 5 8.86E01 1.5 LYM67 11782. 6 N 0.21 5 3.30E02 17.4
LYM69 11852. 2 N 0.33 3 9.38E01 0.8 LYM53 11843. 2 N 0.21 2 4.67E02 15.7
LYM12 11872. 1 N 0.33 3 9.45E01 0.8 LYM10 3 12712. 5 N 0.21 2 5.01E- 02 16.1
LYM35 11811. 2 N 0.33 1 9.70E01 0.4 LYM30 11913. 4 N 0.21 3 5.21E- 02 16.1
LYM34 11903. 2 N 0.33 1 9.79E01 0.3 LYM88 12193. 1 N 0.21 1 5.46E02 15.1
CONTR OL N 0.33 0 LYM23 8 12762. 8 N 0.21 1 5.60E02 15.4
LYM9 11632. 1 O 4.23 9 1.94E- 04 34.8 LYM12 11873. 4 N 0.21 1 5.78E02 15.1
LYM30 11912. 6 O 3.75 4 6.17E- 03 19.4 LYM26 11821. 2 N 0.21 5 6.72E02 17.8
LYM57 12013. 1 o 3.69 7 1.13E02 17.5 LYM69 11852. 2 N 0.21 6.75E02 14.7
LYM35 11812. 3 o 3.65 1.50E02 16 LYM28 5 12734. 9 N 0.21 2 7.54E02 16.1
LYM10 11744. 1 o 3.95 5 1.30E- 01 25.7 LYM26 11824. 5 N 0.22 2 7.68E02 21.1
227
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM57 12012. 4 O 3.45 3 1.41E01 9.8 LYM15 6 12961. 9 N 0.20 8 7.99E02 13.9
LYM35 11813. 5 o 3.49 9 1.51E01 11.2 LYM43 11791. 4 N 0.20 8 8.13E02 13.6
LYM10 11741. 2 o 3.37 2.00E01 7.1 LYM99 12244. 2 N 0.20 7 8.64E02 13.3
LYM9 11633. 7 o 3.49 5 2.27E01 11.1 LYM23 8 12763. 7 N 0.20 5 1.20E01 12
LYM69 11852. 2 o 3.43 9 2.27E01 9.3 LYM15 6 12963. 1 N 0.20 8 1.24E01 13.5
LYM1 11602. 6 o 3.49 6 2.38E01 11.1 LYM82 12201. 1 N 0.20 4 1.29E01 11.7
LYM1 11603. 2 o 3.53 1 3.22E01 12.2 LYM95 12124. 4 N 0.20 4 1.34E01 11.7
LYM14 12051. 4 o 3.73 5 3.69E01 18.7 LYM20 11716. 5 N 0.20 4 1.46E01 11.3
LYM1 11604. 4 o 3.81 8 3.73E01 21.4 LYM31 11921. 3 N 0.20 3 1.70E01 10.9
LYM51 11891. 1 o 3.47 6 3.93E01 10.5 LYM14 5 12951. 9 N 0.20 2 1.80E01 10.4
LYM53 11842. 4 o 3.79 5 4.20E01 20.6 LYM30 11912. 7 N 0.20 2 1.85E01 10.1
LYM57 12012. 6 o 3.74 7 4.88E01 19.1 LYM67 11782. 4 N 0.20 3 2.23E01 11.2
LYM31 11924. 4 o 3.53 1 5.00E01 12.2 LYM20 11712. 2 N 0.20 3 2.24E01 10.7
LYM34 11902. 2 o 3.48 5 5.50E01 10.8 LYM28 5 12734. 7 N 0.2 2.27E01 9.4
LYM13 11771. 9 o 3.34 2 5.66E01 6.2 LYM10 3 12714. 6 N 0.20 4 2.42E01 11.7
LYM14 12051. 1 o 3.33 1 5.99E01 5.9 LYM20 11716. 3 N 0.2 2.43E01 9.3
LYM35 11811. 3 o 3.51 9 6.11E01 11.9 LYM62 12023. 2 N 0.2 2.46E01 9.3
LYM21 11674. 5 o 3.23 2 6.76E01 2.8 LYM66 11953. 6 N 0.19 7 3.17E01 7.7
LYM2 11695. 1 o 3.24 6 7.85E01 3.2 LYM23 8 12763. 5 N 0.19 7 3.17E01 7.7
LYM34 11903. 2 o 3.41 9 8.15E01 8.7 LYM23 2 13024. 5 N 0.19 7 3.18E01 7.7
LYM12 11872. 1 o 3.28 9 8.23E01 4.5 LYM24 12062. 3 N 0.19 7 3.20E01 7.7
LYM7 11594. 2 o 3.25 8 8.24E01 3.6 LYM23 9 13044. 7 N 0.19 7 3.34E01 7.9
LYM31 11923. 4 o 3.26 4 8.39E01 3.8 LYM57 12012. 2 N 0.19 6 3.40E01 7.3
LYM69 11851. 2 o 3.18 7 8.50E01 1.3 LYM10 3 12711. 8 N 0.19 5 4.17E01 6.4
LYM51 11893. 4 o 3.22 1 8.73E01 2.4 LYM53 11842. 4 N 0.19 4 4.55E01 5.8
LYM30 11913. 4 o 3.25 5 8.86E01 3.5 LYM88 12194. 2 N 0.19 3 4.99E01 5.2
228
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM68 11942. 3 O 3.25 2 8.86E01 3.4 LYM14 5 12954. 8 N 0.19 4 5.03E01 6.2
LYM66 11953. 6 o 3.18 6 9.10E01 1.3 LYM12 1 13212. 6 N 0.19 3 5.34E01 5.4
LYM1 11601. 1 o 3.17 2 9.52E01 0.8 LYM23 2 13024. 4 N 0.19 4 5.39E01 6.1
LYM13 11771. 6 o 3.15 1 9.76E01 0.2 LYM67 11782. 5 N 0.19 5.94E01 4.1
CONTR OL o 3.14 6 0 LYM43 11793. 2 N 0.19 2 5.99E01 4.7
LYM9 11632. 1 P 3.79 9 3.19E- 03 12.7 LYM14 5 12954. 7 N 0.19 2 6.07E01 4.8
LYM10 11744. 1 P 3.64 2 4.04E02 8 LYM27 7 13103. 1 N 0.19 6.17E- 01 3.9
LYM57 12012. 4 P 3.61 8 9.72E02 7.3 LYM12 1 13211. 8 N 0.19 6.20E01 3.8
LYM30 11912. 6 P 3.63 8 1.05E- 01 7.9 LYM53 11844. 2 N 0.18 9 6.49E01 3.5
LYM9 11633. 7 P 3.55 4 1.21E- 01 5.4 LYM12 8 12642. 1 N 0.19 6.64E01 3.8
LYM35 11813. 5 P 3.61 1 1.25E- 01 7.1 LYM20 11711. 3 N 0.18 9 6.73E01 3.3
LYM35 11812. 3 P 3.53 3 1.68E- 01 4.8 LYM23 8 12761. 6 N 0.19 6.91E- 01 3.7
LYM57 12013. 1 P 3.58 1 1.87E- 01 6.2 LYM66 11955. 2 N 0.18 8 7.07E01 2.9
LYM53 11842. 4 P 3.71 3 3.40E01 10.1 LYM41 11831. 5 N 0.18 8 7.21E- 01 2.7
LYM14 12051. 4 P 3.67 3.72E01 8.9 LYM23 9 13041. 7 N 0.18 8 7.27E01 2.8
LYM1 11603. 2 P 3.50 8 4.36E01 4.1 LYM14 5 12952. 9 N 0.18 9 7.54E01 3.5
LYM35 11811. 3 P 3.64 1 4.94E01 8 LYM41 11834. 2 N 0.18 8 7.59E01 2.7
LYM51 11891. 1 P 3.47 5.07E01 2.9 LYM27 7 13101. 1 N 0.18 6 8.04E01 1.9
LYM13 11771. 9 P 3.46 9 5.23E01 2.9 LYM24 12063. 3 N 0.18 6 8.26E01 1.8
LYM57 12012. 6 P 3.6 5.25E01 6.8 LYM99 12243. 2 N 0.18 5 8.58E01 1.4
LYM1 11604. 4 P 3.57 5.61E- 01 5.9 LYM23 9 13041. 1 N 0.18 6 8.59E01 1.6
LYM31 11924. 4 P 3.50 5 5.77E01 4 LYM43 11791. 5 N 0.18 5 8.70E01 1.2
LYM34 11902. 2 P 3.48 4 6.13E- 01 3.3 LYM15 6 12961. 7 N 0.18 5 9.12E01 0.9
LYM37 11801. 1 P 3.43 6.41E- 01 1.7 LYM31 11923. 1 N 0.18 5 9.12E01 0.9
LYM1 11602. 6 P 3.47 2 6.46E01 3 LYM62 12023. 5 N 0.18 4 9.24E01 0.7
LYM13 11771. 6 P 3.42 6.49E01 1.4 LYM15 6 12963. 4 N 0.18 5 9.26E01 1
229
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM7 11594. 2 P 3.45 4 7.12E01 2.4 LYM11 6 13201. 8 N 0.18 4 9.37E01 0.6
LYM68 11942. 3 P 3.49 6 7.55E01 3.7 LYM41 11832. 2 N 0.18 4 9.65E01 0.4
LYM14 12051. 1 P 3.42 2 7.70E01 1.5 LYM11 0 12924. 5 N 0.18 3 9.85E01 0.2
LYM12 11872. 1 P 3.44 7 8.61E01 2.2 CONTR OL N 0.18 3 0
LYM43 11791. 4 P 3.38 8 8.73E01 0.5 LYM11 6 13202. 12 O 2.28 9 9.00E06 42.6
LYM34 11903. 2 P 3.43 1 9.24E01 1.8 LYM88 12193. 1 O 1.96 6.36E04 22.1
LYM35 11811. 2 P 3.39 9.29E01 0.5 LYM20 11711. 2 o 2.14 1 2.08E03 33.4
LYM69 11852. 2 P 3.38 1 9.42E01 0.3 LYM53 11841. 1 o 1.95 5 4.31E03 21.8
LYM30 11913. 4 P 3.38 7 9.73E01 0.4 LYM67 11782. 6 o 2.09 7 4.70E03 30.6
CONTR OL P 3.37 2 0 LYM31 11923. 4 o 1.85 5 4.75E03 15.6
LYM12 8 12641. 3 A 93.3 31 6.75E03 3.8 LYM82 12201. 1 o 1.86 3 2.54E02 16.1
LYM90 12393. 2 A 93.3 21 6.94E03 3.8 LYM26 11824. 3 o 1.91 9 3.12E02 19.6
LYM86 12183. 1 A 93.0 89 9.82E03 3.5 LYM23 8 12764. 8 o 1.94 2 3.40E02 21
LYM89 12211. 4 A 92.8 45 1.42E02 3.2 LYM12 11871. 3 o 1.75 4 6.30E02 9.3
LYM14 9 12343. 1 A 92.9 42 1.62E02 3.4 LYM12 8 12641. 5 o 2.37 6 6.82E02 48.1
LYM15 7 13341. 7 A 94.8 77 1.64E02 5.5 LYM99 12243. 1 o 2.28 7 8.62E02 42.5
LYM17 8 12163. 4 A 92.9 18 1.64E02 3.3 LYM26 11824. 1 o 2.08 8 9.91E02 30.1
LYM90 12393. 1 A 92.5 55 2.23E02 2.9 LYM12 8 12641. 3 o 2.09 6 1.04E01 30.6
LYM12 8 12642. 3 A 92.5 17 2.39E02 2.9 LYM99 12244. 2 o 1.75 7 1.07E01 9.5
LYM99 12243. 2 A 92.5 43 2.43E02 2.9 LYM88 12194. 2 o 1.70 5 1.51E01 6.2
LYM20 6 12601. 3 A 93.4 51 2.44E02 3.9 LYM23 9 13042. 9 o 1.91 5 1.56E01 19.3
LYM12 9 12573. 5 A 92.5 22 2.60E02 2.9 LYM53 11843. 2 o 1.71 9 1.75E01 7.1
LYM10 7 12631. 4 A 92.8 99 2.65E02 3.3 LYM28 5 12733. 9 o 2.36 6 1.77E01 47.4
LYM86 12182. 3 A 93.0 33 2.93E02 3.5 LYM26 11824. 6 o 1.95 5 1.91E01 21.8
LYM12 8 12641. 1 A 92.8 97 2.99E02 3.3 LYM24 12061. 4 o 1.98 4 1.96E01 23.6
LYM17 8 12163. 3 A 92.5 04 3.08E02 2.9 LYM10 3 12713. 5 o 2.02 9 2.03E01 26.4
230
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM14 9 12344. 2 A 92.3 23 3.24E02 2.7 LYM66 11954. 4 O 2.06 3 2.20E01 28.5
LYM73 12623. 2 A 92.7 62 3.28E02 3.2 LYM12 11872. 1 o 2.39 4 2.31E01 49.2
LYM6 11735. 1 A 92.3 26 3.43E02 2.7 LYM11 6 13202. 7 o 1.81 5 2.36E01 13.1
LYM86 12181. 3 A 93.2 42 4.14E02 3.7 LYM95 12124. 4 o 1.81 4 2.85E01 13
LYM25 0 12613. 2 A 92.2 15 4.16E02 2.5 LYM31 11924. 4 o 1.78 5 3.22E01 11.2
LYM25 0 12613. 4 A 92.1 65 4.20E02 2.5 LYM20 11716. 5 o 1.70 8 3.22E01 6.4
LYM89 12214. 2 A 92.3 55 4.43E02 2.7 LYM66 11955. 2 o 1.76 5 3.26E01 10
LYM90 12395. 3 A 92.9 38 4.47E02 3.4 LYM95 12121. 2 o 2.14 2 3.32E01 33.5
LYM86 12183. 3 A 92.9 37 4.54E02 3.4 LYM12 11871. 1 o 2.03 3.52E01 26.5
LYM15 7 13341. 4 A 92.3 5 4.58E02 2.7 LYM69 11852. 2 o 1.81 5 3.82E01 13.1
LYM12 9 12573. 3 A 92.8 4 4.79E02 3.2 LYM14 12051. 4 o 1.78 2 4.01E01 11
LYM6 11734. 3 A 92.2 88 5.09E02 2.6 LYM10 3 12712. 8 o 1.75 9 5.04E01 9.6
LYM25 6 13322. 3 A 92.6 41 6.65E02 3 LYM23 9 13044. 8 o 1.73 5 5.52E01 8.1
LYM15 7 13342. 4 A 94.1 06 7.45E02 4.7 LYM67 11782. 4 o 1.77 5 5.69E01 10.6
LYM88 12191. 2 A 91.9 53 7.61E02 2.3 LYM43 11791. 4 o 1.66 9 5.91E01 4
LYM99 12244. 1 A 93.5 09 7.70E02 4 LYM30 11912. 7 o 1.63 9 5.96E01 2.1
LYM17 8 12164. 3 A 91.8 16 8.24E02 2.1 LYM30 11912. 6 o 1.73 6 6.07E01 8.1
LYM25 0 12614. 1 A 91.7 29 8.76E02 2 LYM23 2 13024. 7 o 1.92 6 6.15E01 20
LYM90 12395. 1 A 93.1 65 8.97E02 3.6 LYM62 12023. 2 o 1.68 5 6.23E01 5
LYM91 13283. 4 A 91.6 31 1.00E01 1.9 LYM23 2 13024. 6 o 1.68 6 6.28E01 5.1
LYM17 8 12161. 2 A 92.2 39 1.02E01 2.6 LYM66 11953. 6 o 1.63 5 6.53E01 1.9
LYM12 9 12571. 3 A 91.6 67 1.10E01 1.9 LYM15 6 12963. 1 o 1.71 1 6.79E01 6.6
LYM25 6 13323. 3 A 93.1 78 1.29E01 3.6 LYM26 11824. 5 o 1.86 6 6.82E01 16.3
LYM10 7 12633. 4 A 91.4 72 1.31E01 1.7 LYM12 8 12641. 1 o 1.68 4 7.51E01 4.9
LYM91 13283. 1 A 93.9 48 1.50E01 4.5 LYM24 12064. 1 o 1.71 1 7.64E01 6.6
LYM88 12193. 1 A 91.3 77 1.54E01 1.6 LYM26 11821. 2 o 1.70 6 7.79E01 6.3
231
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM15 7 13341. 1 A 93.6 47 1.57E- 01 4.1 LYM11 6 13204. 4 O 1.77 9 8.04E01 10.8
LYM90 12392. 1 A 92.7 86 1.71E- 01 3.2 LYM99 12243. 2 o 1.63 8.51E- 01 1.6
LYM14 7 12583. 3 A 91.8 46 1.98E- 01 2.1 LYM43 11793. 2 o 1.63 9.41E01 1.6
LYM6 11735. 2 A 92.3 19 2.06E01 2.7 LYM30 11913. 5 o 1.60 6 9.98E01 0.1
LYM10 7 12631. 2 A 92.3 49 2.08E01 2.7 CONTR OL o 1.60 5 0
LYM25 0 12614. 2 A 91.1 84 2.30E01 1.4 LYM20 11711. 2 P 2.43 8 2.52E04 17.1
LYM28 3 13304. 4 A 91.8 62 2.32E01 2.2 LYM23 8 12764. 8 P 2.35 7 1.15E- 03 13.2
LYM14 7 12584. 4 A 91.1 39 2.56E01 1.4 LYM11 6 13202. 12 P 2.55 2 3.04E03 22.6
LYM99 12243. 1 A 91.0 86 2.57E01 1.3 LYM53 11841. 1 P 2.33 8 3.08E03 12.3
LYM88 12192. 1 A 91.5 79 2.62E01 1.8 LYM82 12201. 1 P 2.29 4 5.04E03 10.2
LYM28 3 13304. 5 A 91.3 37 2.62E01 1.6 LYM31 11923. 4 P 2.28 4 6.11E- 03 9.7
LYM73 12623. 1 A 92.4 2 2.83E01 2.8 LYM88 12193. 1 P 2.39 3 7.93E03 14.9
LYM14 7 12581. 4 A 91.9 97 2.92E01 2.3 LYM67 11782. 6 P 2.39 3 1.64E02 14.9
LYM89 12214. 3 A 91.7 34 2.94E01 2 LYM12 8 12641. 5 P 2.57 9 3.82E02 23.9
LYM28 3 13302. 2 A 90.9 34 2.99E01 1.1 LYM99 12244. 2 P 2.24 3 4.31E02 7.7
LYM25 6 13321. 2 A 92.2 48 3.12E- 01 2.6 LYM12 11871. 3 P 2.21 4.39E02 6.1
LYM15 9 13354. 6 A 91.4 58 3.15E- 01 1.7 LYM28 5 12733. 9 P 2.53 8 4.87E02 21.9
LYM12 9 12572. 2 A 91.7 27 3.32E01 2 LYM26 11824. 3 P 2.31 5.40E02 10.9
LYM17 8 12164. 2 A 92.0 77 3.32E01 2.4 LYM24 12061. 4 P 2.34 4 5.96E02 12.5
LYM88 12191. 1 A 93.3 57 3.33E01 3.8 LYM12 8 12641. 3 P 2.41 2 6.15E- 02 15.8
LYM25 0 12611. 3 A 91.2 45 3.42E01 1.5 LYM53 11843. 2 P 2.23 6.53E02 7.1
LYM28 3 13302. 1 A 90.8 34 3.50E01 1 LYM66 11954. 4 P 2.44 3 6.54E02 17.3
LYM91 13284. 3 A 90.9 61 3.56E01 1.2 LYM43 11791. 4 P 2.21 1 6.54E02 6.2
LYM14 7 12584. 5 A 93.9 96 4.12E01 4.5 LYM99 12243. 1 P 2.58 2 9.80E02 24
LYM15 9 13352. 4 A 91.0 1 4.60E01 1.2 LYM31 11924. 4 P 2.26 9 1.13E- 01 9
LYM28 3 13303. 2 A 91.4 06 4.71E01 1.6 LYM10 3 12713. 5 P 2.42 1 1.17E- 01 16.3
232
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 7 12632. 1 A 91.6 45 4.88E01 1.9 LYM88 12194. 2 P 2.18 5 1.24E01 4.9
LYM 12 9 12572. 4 A 90.8 78 5.03E01 1.1 LYM26 11824. 6 P 2.33 4 1.30E01 12.1
LYM89 12214. 4 A 93.1 57 5.04E01 3.6 LYM66 11955. 2 P 2.2 1.41E01 5.6
LYM 12 8 12642. 2 A 91.5 58 5.33E01 1.8 LYM 12 11872. 1 P 2.73 9 1.65E01 31.5
LYM25 6 13321. 3 A 91.5 38 5.33E01 1.8 LYM 11 6 13202. 7 P 2.16 3 1.71E01 3.9
LYM20 6 12603. 3 A 91.1 5 5.58E01 1.4 LYM95 12121. 2 P 2.45 6 1.79E01 17.9
LYM23 6 12592. 3 A 91.4 39 5.75E01 1.7 LYM26 11824. 1 P 2.38 9 2.02E01 14.7
LYM23 6 12594. 3 A 91.3 77 6.02E01 1.6 LYM 12 11873. 4 P 2.15 3 2.17E01 3.4
LYM23 6 12592. 4 A 90.9 99 6.25E01 1.2 LYM23 9 13044. 8 P 2.22 3 2.38E01 6.7
LYM 14 7 12583. 1 A 90.9 12 6.62E01 1.1 LYM66 11953. 6 P 2.16 9 2.58E01 4.2
LYM 14 9 12341. 1 A 91.3 27 6.71E01 1.6 LYM23 9 13042. 9 P 2.33 2.67E01 11.9
LYM73 12622. 2 A 91.9 11 6.73E01 2.2 LYM23 2 13024. 6 P 2.22 1 2.68E01 6.6
LYM20 6 12601. 2 A 90.4 59 7.06E01 0.6 LYM 12 11871. 1 P 2.37 8 3.29E01 14.2
LYM20 6 12603. 1 A 90.2 7 7.13E01 0.4 LYM95 12124. 4 P 2.24 5 3.30E01 7.8
LYM6 11733. 2 A 90.2 49 7.32E01 0.4 LYM 14 12051. 4 P 2.23 4 3.46E01 7.3
LYM25 6 13324. 2 A 90.1 78 7.88E01 0.3 LYM30 11912. 7 P 2.13 4 3.65E01 2.5
LYM 14 9 12341. 3 A 90.2 21 7.91E01 0.3 LYM62 12023. 2 P 2.20 2 3.71E01 5.7
LYM91 13284. 4 A 90.4 29 8.53E01 0.6 LYM 10 3 12712. 8 P 2.20 1 3.96E01 5.7
LYM6 11736. 1 A 90.2 97 9.04E01 0.4 LYM20 11716. 5 P 2.15 5 4.05E01 3.5
LYM23 6 12593. 4 A 90.0 2 9.77E01 0.1 LYM69 11852. 2 P 2.18 8 4.52E01 5.1
LYM89 12211. 2 A 89.9 55 9.84E01 0 LYM30 11912. 6 P 2.20 2 5.00E01 5.7
CONTR OL A 89.9 23 0 LYM 14 5 12951. 9 P 2.11 7 5.23E01 1.7
LYM99 12243. 1 B 0.44 4 1.98E03 23 LYM 12 8 12641. 1 P 2.19 5.43E01 5.2
LYM 17 8 12163. 3 B 0.40 8 2.91E02 13.1 LYM67 11782. 4 P 2.22 1 5.46E01 6.7
LYM28 3 13302. 1 B 0.49 1 3.45E02 36 LYM23 2 13024. 7 P 2.36 6 5.92E01 13.6
LYM 15 9 13354. 6 B 0.40 6 1.13E01 12.6 LYM30 11913. 5 P 2.21 6.02E01 6.1
233
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 12 9 12573. 5 B 0.40 9 1.16E- 01 13.3 LYM26 11824. 5 P 2.26 8 6.14E- 01 8.9
LYM25 0 12613. 4 B 0.40 3 1.57E- 01 11.6 LYM 11 6 13204. 4 P 2.29 2 6.62E01 10.1
LYM 17 8 12164. 2 B 0.39 9 2.93E01 10.5 LYM 15 6 12961. 9 P 2.10 6 6.63E01 1.1
LYM23 6 12594. 3 B 0.39 1 2.93E01 8.4 LYM28 5 12734. 9 P 2.18 9 6.81E- 01 5.1
LYM89 12214. 4 B 0.37 9 3.31E- 01 5 LYM24 12064. 1 P 2.18 2 6.92E01 4.8
LYM6 11736. 1 B 0.39 5 3.53E01 9.5 LYM 15 6 12963. 1 P 2.13 8 7.88E01 2.7
LYM91 13284. 3 B 0.48 6 3.66E01 34.6 LYM30 11913. 4 P 2.11 9 8.02E01 1.8
LYM88 12193. 1 B 0.37 8 3.74E01 4.6 LYM26 11821. 2 P 2.13 9 8.11E- 01 2.7
LYM28 3 13302. 2 B 0.38 2 3.95E01 5.8 LYM43 11793. 2 P 2.11 9 8.47E01 1.8
LYM20 6 12601. 2 B 0.44 7 4.11E01 23.9 LYM43 11791. 5 P 2.09 6 8.52E01 0.6
LYM91 13284. 5 B 0.38 9 4.14E01 7.9 LYM 10 3 12712. 5 P 2.08 5 9.78E01 0.1
LYM23 6 12592. 3 B 0.40 3 4.39E01 11.7 CONTR OL P 2.08 2 0
LYM28 3 13304. 4 B 0.49 1 4.67E01 36 LYM28 9 12492. 2 A 92.9 47 1.86E- 01 1.4
LYM20 6 12603. 1 B 0.39 4.67E01 8.1 LYM25 5 13082. 5 A 92.8 25 2.17E01 1.3
LYM 17 5 12651. 2 B 0.44 2 4.72E01 22.5 LYM 17 3 12981. 6 A 93.6 46 2.22E01 2.2
LYM73 12623. 2 B 0.42 5 4.91E01 17.8 LYM 10 6 12144. 4 A 92.7 05 3.20E01 1.2
LYM25 0 12611. 3 B 0.42 9 4.98E01 19 LYM21 2 13032. 8 A 92.5 13 3.49E01 1
LYM20 6 12603. 3 B 0.39 4.98E01 8.1 LYM 10 2 12222. 1 A 92.5 3 3.64E01 1
LYM 15 9 13352. 4 B 0.39 6 5.08E01 9.7 LYM61 13171. 8 A 96.6 67 3.77E01 5.5
LYM 15 7 13342. 4 B 0.37 4 5.11E- 01 3.6 LYM22 0 12851. 12 A 92.9 9 4.10E01 1.5
LYM 15 9 13354. 5 B 0.41 2 5.21E- 01 14.3 LYM 11 1 12254. 3 A 92.6 06 4.40E01 1.1
LYM99 12243. 2 B 0.45 1 5.34E01 25.1 LYM28 7 12771. 6 A 93.3 04 4.59E01 1.8
LYM89 12211. 2 B 0.45 4 5.40E01 25.9 LYM21 2 13031. 5 A 93.6 14 4.80E01 2.2
LYM 17 8 12163. 4 B 0.38 8 5.58E01 7.4 LYM 10 6 12142. 2 A 92.2 75 4.86E01 0.7
LYM 12 9 12573. 3 B 0.39 3 5.67E01 9 LYM 13 8 12562. 2 A 92.3 21 4.89E01 0.8
LYM 17 8 12164. 3 B 0.44 8 5.70E01 24.2 LYM 11 9 12461. 1 A 92.3 76 4.93E01 0.8
234
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 7 12631. 4 B 0.43 6 5.95E01 20.9 LYM28 8 12743. 8 A 92.2 88 5.05E01 0.7
LYM25 0 12613. 2 B 0.38 1 5.96E01 5.7 LYM27 0 12871. 7 A 92.6 01 5.14E01 1.1
LYM 17 8 12161. 2 B 0.39 6 5.98E01 9.7 LYM 18 3 12993. 7 A 92.2 09 5.32E01 0.6
LYM 10 7 12633. 4 B 0.39 9 6.05E01 10.7 LYM 13 8 12562. 1 A 92.2 98 5.80E01 0.7
LYM 14 9 12341. 1 B 0.43 8 6.07E01 21.4 LYM21 2 13031. 6 A 92.7 57 5.96E01 1.2
LYM 14 9 12344. 2 B 0.44 6 7.09E01 23.7 LYM22 0 12852. 2 A 92.2 25 6.15E01 0.7
LYM 14 7 12583. 3 B 0.38 9 7.15E01 7.9 LYM44 11885. 4 A 92.0 76 6.37E01 0.5
LYM 12 9 12572. 4 B 0.37 9 7.22E01 5.2 LYM 11 1 12251. 1 A 92.2 35 6.39E01 0.7
LYM88 12191. 2 B 0.36 8 7.24E01 1.9 LYM 18 3 12993. 5 A 92.2 76 6.42E01 0.7
LYM23 6 12591. 1 B 0.37 7.41E01 2.6 LYM28 9 12491. 1 A 92.3 18 6.45E01 0.8
LYM 15 9 13354. 8 B 0.4 7.62E01 10.9 LYM24 2 13053. 7 A 92.3 83 6.48E01 0.8
LYM 14 7 12583. 1 B 0.36 6 7.74E01 1.5 LYM20 1 12833. 9 A 92.1 11 6.51E01 0.5
LYM 17 5 12654. 4 B 0.37 6 7.81E01 4.2 LYM20 1 12833. 7 A 92.1 64 6.53E01 0.6
LYM 14 7 12584. 5 B 0.37 1 8.02E01 2.9 LYM24 2 13051. 8 A 92.2 32 6.65E01 0.7
LYM25 6 13324. 2 B 0.37 5 8.21E01 3.9 LYM20 8 13014. 7 A 92.4 84 6.76E01 0.9
LYM25 0 12614. 1 B 0.37 1 8.33E01 2.7 LYM 19 8 13002. 8 A 92.0 42 6.93E01 0.5
LYM6 11735. 1 B 0.36 3 8.97E01 0.6 LYM 15 3 12323. 2 A 91.9 83 7.00E01 0.4
LYM91 13283. 4 B 0.36 3 9.28E01 0.6 LYM 14 2 12802. 7 A 92.0 44 7.19E01 0.5
LYM73 12623. 3 B 0.36 7 9.60E01 1.7 LYM 18 3 12994. 8 A 92.0 15 7.24E01 0.4
CONTR OL B 0.36 1 0 LYM 14 2 12802. 9 A 91.9 61 7.32E01 0.4
LYM25 0 12613. 4 C 4.50 6 3.98E04 15.2 LYM61 13174. 5 A 92.7 81 7.51E01 1.3
LYM20 6 12601. 2 C 4.46 3 1.11E03 14.1 LYM 10 7 12632. 3 A 91.9 22 7.63E01 0.3
LYM 15 9 13354. 6 C 4.33 1 2.97E03 10.7 LYM29 1 12754. 9 A 91.8 75 7.86E01 0.3
LYM20 6 12603. 3 C 4.43 8 3.26E03 13.5 LYM20 1 12833. 6 A 93.2 31 7.98E01 1.8
LYM73 12623. 2 C 4.3 4.40E03 9.9 LYM44 11885. 3 A 91.8 67 8.04E01 0.3
LYM 10 7 12633. 4 C 4.35 6 5.15E03 11.4 LYM 13 0 12332. 1 A 92.0 65 8.21E01 0.5
235
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 8 12163. 3 C 4.19 4 2.03E02 12 LYM 13 7 12153. 1 A 91.9 68 8.65E01 0.4
LYM25 0 12613. 2 c 4.17 5 3.20E02 6.7 LYM 11 1 12254. 4 A 91.8 77 8.89E01 0.3
LYM88 12191. 2 c 4.37 5 3.90E02 11.9 LYM61 13172. 4 A 92.0 25 8.90E01 0.4
LYM 15 9 13352. 4 c 4.27 5 4.86E02 9.3 LYM 10 0 12134. 1 A 91.7 57 8.94E01 0.1
LYM91 13284. 3 c 4.8 6.56E02 22.7 LYM90 12392. 1 A 91.7 9 9.06E01 0.2
LYM20 6 12603. 1 c 4.2 1.21E01 7.4 LYM 13 0 12333. 1 A 91.9 1 9.11E01 0.3
LYM23 6 12594. 3 c 4.18 1 1.21E01 6.9 LYM 19 7 12824. 4 A 91.7 79 9.37E01 0.2
LYM 17 8 12161. 2 c 4.3 1.39E01 9.9 LYM90 12394. 2 A 91.6 91 9.53E01 0.1
LYM90 12395. 1 c 4.16 3 1.59E01 6.4 LYM29 1 12753. 6 A 91.6 69 9.65E01 0
LYM 17 5 12651. 2 c 4.53 8 1.78E01 16 LYM 10 5 12293. 1 A 91.6 57 9.77E01 0
LYM99 12243. 1 c 4.78 1 1.90E01 22.2 LYM20 8 13013. 6 A 91.6 63 9.84E01 0
LYM 15 7 13342. 4 c 4.31 3 2.08E01 10.3 LYM90 12393. 4 A 91.6 27 9.99E01 0
LYM23 6 12592. 3 c 4.31 3 2.53E01 10.3 CONTR OL A 91.6 24 0
LYM23 6 12591. 1 c 4.07 5 2.73E01 4.2 LYM 15 2 12373. 2 B 0.35 7 1.21E03 50.4
LYM 12 9 12573. 5 c 4.21 9 2.73E01 7.9 LYM 10 2 12222. 1 B 0.38 6 1.41E03 62.7
LYM25 6 13321. 2 c 4.18 8 3.23E01 7.1 LYM 17 4 12411. 2 B 0.34 4 2.44E03 44.8
LYM6 11735. 1 c 4.14 4 3.41E01 5.9 LYM 11 1 12251. 1 B 0.37 9 3.24E03 59.8
LYM99 12241. 1 c 4.01 3 3.48E01 2.6 LYM 10 0 12133. 3 B 0.34 9 3.88E03 47.2
LYM88 12193. 1 c 4.13 8 3.66E01 5.8 LYM 10 6 12144. 4 B 0.33 4 6.10E03 40.6
LYM6 11736. 1 c 4.63 8 3.77E01 18.6 LYM 10 7 12632. 3 B 0.38 6 6.60E03 62.7
LYM28 3 13304. 4 c 4.56 9 3.87E01 16.8 LYM 17 4 12414. 3 B 0.32 4 7.65E03 36.4
LYM25 0 12611. 3 c 4.56 9 4.20E01 16.8 LYM 10 2 12222. 2 B 0.34 5 9.57E03 45.4
LYM 12 9 12572. 4 c 4.31 9 4.24E01 10.4 LYM 10 7 12631. 2 B 0.31 2 1.54E02 31.4
LYM 17 8 12163. 4 c 4.26 6 4.25E01 9.1 LYM 10 2 12221. 2 B 0.33 6 1.60E02 41.4
LYM 14 7 12583. 3 c 4 4.32E01 2.3 LYM 10 5 12294. 3 B 0.31 3 1.62E02 31.7
LYM25 0 12614. 1 c 4.33 1 4.39E01 10.7 LYM 14 3 12524. 5 B 0.31 2 1.76E02 31.4
236
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 5 12654. 4 C 4.17 8 4.45E01 6.8 LYM 10 0 12133. 1 B 0.32 5 1.79E02 36.9
LYM6 11733. 2 c 4.11 3 4.62E01 5.1 LYM 19 8 13004. 6 B 0.31 9 2.41E02 34.3
LYM 15 9 13354. 5 c 4.51 5 4.68E01 15.4 LYM 13 7 12153. 1 B 0.30 5 2.82E02 28.5
LYM91 13283. 4 c 4.14 4 4.87E01 5.9 LYM 10 7 12632. 1 B 0.34 6 3.57E02 45.6
LYM 17 8 12164. 3 c 4.48 1 5.11E01 14.6 LYM 11 1 12254. 4 B 0.40 4 3.60E02 70.4
LYM28 3 13302. 1 c 4.23 1 5.82E01 8.2 LYM 10 5 12297. 2 B 0.29 7 4.45E02 25.1
LYM25 6 13323. 3 c 3.98 8 6.15E01 2 LYM 13 7 12151. 1 B 0.32 3 4.83E02 36.1
LYM99 12243. 2 c 4.23 8 6.45E01 8.3 LYM 14 3 12523. 4 B 0.29 3 4.91E02 23.2
LYM 10 7 12631. 4 c 4.1 6.53E01 4.8 LYM 11 1 12251. 3 B 0.31 9 5.49E02 34.6
LYM 17 8 12164. 2 c 4.03 1 6.82E01 3.1 LYM 10 6 12142. 3 B 0.33 6 5.57E02 41.4
LYM 14 7 12584. 5 c 4.06 9 6.98E01 4 LYM22 0 12851. 8 B 0.30 1 5.77E02 26.9
LYM25 6 13324. 2 c 4.01 3 7.05E01 2.6 LYM 10 2 12221. 1 B 0.29 9 6.79E02 26.1
LYM88 12192. 1 c 3.98 8 7.11E01 2 LYM 17 4 12412. 1 B 0.38 4 7.26E02 61.7
LYM23 6 12592. 4 c 4.13 8 7.17E01 5.8 LYM 13 7 12152. 1 B 0.28 6 8.50E02 20.3
LYM89 12211. 2 c 4.09 4 7.24E01 4.7 LYM 13 7 12154. 5 B 0.29 1 8.50E02 22.4
LYM 15 7 13341. 4 c 4.05 7.44E01 3.5 LYM 14 3 12524. 7 B 0.28 9 9.00E02 21.7
LYM89 12214. 4 c 3.95 6 7.54E01 1.2 LYM 13 8 12561. 3 B 0.29 3 9.03E02 23.2
LYM86 12181. 2 c 3.98 8 7.84E01 2 LYM 10 2 12222. 3 B 0.40 4 9.03E02 70.1
LYM73 12622. 2 c 4.06 3 8.04E01 3.9 LYM 14 2 12804. 1 B 0.28 5 9.32E02 20
LYM 14 9 12344. 2 c 4.24 4 8.12E01 8.5 LYM 10 5 12293. 1 B 0.28 3 1.01E01 19
LYM 15 9 13354. 8 c 4.03 1 8.41E01 3.1 LYM 10 7 12631. 1 B 0.32 6 1.10E01 37.5
LYM86 12183. 3 c 3.94 4 8.67E01 0.8 LYM21 2 13031. 6 B 0.28 4 1.11E01 19.6
LYM25 6 13322. 3 c 3.92 5 9.00E01 0.4 LYM29 1 12754. 9 B 0.51 6 1.24E01 117.5
LYM28 3 13302. 2 c 3.92 5 9.20E01 0.4 LYM 10 5 12297. 1 B 0.40 2 1.35E01 69.3
LYM6 11735. 2 c 3.93 1 9.33E01 0.5 LYM 13 8 12562. 1 B 0.27 8 1.36E01 17.2
CONTR OL c 3.91 1 0 LYM 10 0 12131. 2 B 0.35 1.42E01 47.4
237
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 7 12631. 4 D 0.28 6 2.09E03 30.2 LYM 10 0 12131. 3 B 0.3 1.45E01 26.4
LYM23 6 12592. 3 D 0.28 2 3.DEOS 28.3 LYM28 9 12491. 1 B 0.34 8 1.51E01 46.7
LYM 14 7 12583. 3 D 0.27 8 7.97E03 26.3 LYM 17 3 12982. 7 B 0.32 6 1.56E01 37.5
LYM 12 9 12572. 4 D 0.27 9.42E03 22.7 LYM 10 6 12144. 3 B 0.35 1 1.59E01 48
LYM6 11736. 1 D 0.26 8 1.07E02 22.1 LYM 17 4 12414. 2 B 0.38 4 1.60E01 61.7
LYM 17 8 12163. 4 D 0.28 3 1.31E02 28.9 LYM 10 7 12633. 4 B 0.37 2 1.75E01 56.7
LYM89 12211. 4 D 0.26 9 3.53E02 22.3 LYM21 2 13032. 8 B 0.30 4 1.89E01 28.2
LYM73 12623. 2 D 0.25 4 4.68E02 15.5 LYM 15 3 12324. 2 B 0.27 1 1.90E01 14.3
LYM90 12395. 3 D 0.28 5 6.11E02 29.5 LYM 14 3 12521. 1 B 0.30 3 1.91E01 27.5
LYM99 12243. 2 D 0.26 3 6.21E02 19.6 LYM 13 8 12561. 1 B 0.31 9 1.91E01 34.3
LYM88 12193. 1 D 0.28 8 6.59E02 30.9 LYM 10 0 12134. 1 B 0.29 8 1.91E01 25.6
LYM20 6 12603. 1 D 0.27 1 6.76E02 23.2 LYM 15 2 12371. 3 B 0.31 1 2.03E01 30.9
LYM25 0 12613. 2 D 0.25 1 6.95E02 14.5 LYM28 9 12493. 2 B 0.28 1 2.03E01 18.5
LYM90 12392. 1 D 0.24 9 7.55E02 13.5 LYM 10 6 12142. 2 B 0.45 1 2.04E01 89.9
LYM86 12182. 3 D 0.24 7 9.53E02 12.5 LYM 10 6 12141. 4 B 0.42 7 2.09E01 79.9
LYM90 12395. 1 D 0.27 8 1.03E01 26.4 LYM 17 3 12982. 6 B 0.34 2.21E01 43.3
LYM 14 7 12584. 4 D 0.24 4 1.25E01 11.2 LYM 10 7 12631. 4 B 0.50 3 2.37E01 112.1
LYM 17 8 12161. 2 D 0.26 8 1.42E01 22.2 LYM 13 7 12151. 4 B 0.33 7 2.43E01 41.9
LYM23 6 12594. 3 D 0.24 5 1.49E01 11.3 LYM28 8 12744. 7 B 0.31 9 2.48E01 34.3
LYM 12 8 12641. 3 D 0.24 3 1.63E01 10.8 LYM 15 3 12324. 1 B 0.37 6 2.54E01 58.3
LYM 17 8 12164. 3 D 0.24 2 1.63E01 10.3 LYM 11 1 12254. 3 B 0.27 5 2.65E01 15.9
LYM20 6 12603. 3 D 0.34 5 1.82E01 57 LYM 19 7 12824. 4 B 0.34 2.66E01 43.4
LYM 15 9 13354. 6 D 0.25 7 1.95E01 16.9 LYM 10 2 12222. 6 B 0.52 8 2.70E01 122.3
LYM73 12623. 1 D 0.24 7 2.14E01 12.5 LYM 15 2 12371. 2 B 0.32 3 2.76E01 35.9
LYM 15 9 13354. 5 D 0.24 1 2.20E01 9.8 LYM22 0 12851. 12 B 0.26 6 2.76E01 11.9
LYM 12 9 12573. 3 D 0.26 7 2.33E01 21.4 LYM 13 8 12566. 1 B 0.29 6 2.78E01 24.6
238
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM25 0 12613. 4 D 0.32 6 2.36E01 48.2 LYM 19 8 13002. 6 B 0.40 1 2.91E01 68.8
LYM 10 7 12633. 4 D 0.32 1 2.54E01 45.9 LYM 17 3 12981. 5 B 0.26 8 2.98E01 13
LYM88 12191. 2 D 0.28 5 2.57E01 29.6 LYM 14 2 12802. 9 B 0.32 3 3.06E01 36.1
LYM 17 5 12651. 2 D 0.24 1 2.65E01 9.5 LYM44 11884. 1 B 0.26 3 3.14E- 01 10.6
LYM6 11735. 1 D 0.29 8 2.86E01 35.7 LYM 14 3 12521. 2 B 0.26 5 3.27E01 11.7
LYM25 0 12614. 1 D 0.24 2.88E01 9.2 LYM 15 2 12372. 2 B 0.28 4 3.43E01 19.7
LYM 15 7 13341. 4 D 0.23 5 3.14E- 01 7.1 LYM28 8 12743. 9 B 0.38 1 3.52E01 60.6
LYM 17 8 12163. 3 D 0.27 4 3.28E01 24.7 LYM 17 3 12981. 6 B 0.32 7 3.64E01 37.7
LYM99 12243. 1 D 0.29 8 3.29E01 35.7 LYM 11 1 12252. 2 B 0.40 9 3.69E01 72.2
LYM88 12194. 2 D 0.24 2 3.37E01 10 LYM 11 1 12251. 4 B 0.33 6 3.76E01 41.7
LYM 12 9 12573. 5 D 0.28 6 3.40E01 30 LYM28 9 12491. 4 B 0.35 6 3.78E01 50.1
LYM86 12183. 3 D 0.23 5 3.42E01 6.9 LYM 19 8 13002. 8 B 0.27 6 3.80E01 16.1
LYM89 12214. 2 D 0.28 3 3.49E01 29 LYM 11 9 12463. 2 B 0.33 6 3.81E- 01 41.4
LYM20 6 12601. 2 D 0.33 2 3.68E01 51 LYM 10 5 12294. 2 B 0.30 9 3.82E01 30.3
LYM 12 8 12642. 3 D 0.25 4 4.14E01 15.4 LYM25 5 13082. 5 B 0.26 8 3.92E01 12.7
LYM91 13284. 3 D 0.25 7 4.24E01 16.8 LYM 14 2 12803. 6 B 0.42 6 3.92E01 79.3
LYM23 6 12591. 1 D 0.27 4.45E01 23 LYM 10 5 12295. 2 B 0.32 6 3.98E01 37.5
LYM91 13283. 1 D 0.23 1 4.60E01 5 LYM20 8 13013. 6 B 0.35 9 4.05E01 51.2
LYM89 12214. 3 D 0.25 6 4.88E01 16.3 LYM24 2 13051. 8 B 0.31 2 4.11E01 31.4
LYM20 6 12601. 3 D 0.23 2 5.03E01 5.4 LYM 18 3 12991. 7 B 0.25 8 4.18E01 8.5
LYM86 12183. 1 D 0.24 5 5.08E01 11.6 LYM 11 9 12461. 1 B 0.27 4.22E01 13.8
LYM23 6 12592. 4 D 0.26 9 5.38E01 22.2 LYM 14 2 12801. 8 B 0.25 8 4.22E01 8.8
LYM 17 5 12654. 4 D 0.26 2 5.39E01 19 LYM28 8 12743. 8 B 0.26 9 4.37E01 13.5
LYM90 12393. 1 D 0.25 1 5.42E01 14.3 LYM28 7 12773. 7 B 0.30 3 4.38E01 27.5
LYM25 0 12614. 2 D 0.24 3 5.44E01 10.5 LYM21 2 13031. 5 B 0.26 6 4.43E01 11.9
LYM25 0 12611. 3 D 0.26 5 5.54E01 20.5 LYM25 5 13082. 7 B 0.26 4 4.46E01 11.4
239
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM28 3 13304. 4 D 0.25 1 6.17E01 14.1 LYM 14 3 12524. 2 B 0.30 9 4.52E01 30.3
LYM6 11733. 2 D 0.23 5 6.79E01 6.8 LYM 15 3 12321. 2 B 0.30 3 4.54E01 27.5
LYM 14 7 12584. 5 D 0.22 7 6.93E01 3.3 LYM27 0 12871. 7 B 0.26 4 4.64E01 11.1
LYM 15 7 13342. 4 D 0.24 9 7.01E01 13.2 LYM20 8 13012. 8 B 0.34 9 4.64E01 46.9
LYM91 13283. 4 D 0.24 8 7.12E01 12.8 LYM22 0 12851. 11 B 0.27 3 4.64E01 15
LYM 12 8 12641. 1 D 0.23 6 7.33E01 7.6 LYM25 5 13082. 9 B 0.32 7 4.69E01 37.7
LYM20 6 12603. 2 D 0.22 5 7.44E01 2.4 LYM 15 2 12373. 1 B 0.25 6 4.76E01 8
LYM73 12622. 2 D 0.23 4 8.40E01 6.4 LYM 17 4 12411. 3 B 0.26 5 4.89E01 11.7
LYM 17 5 12654. 6 D 0.22 6 8.63E01 2.7 LYM 17 3 12981. 8 B 0.25 4 4.95E01 7
LYM 15 9 13352. 4 D 0.22 5 8.63E01 2.3 LYM28 8 12741. 9 B 0.26 8 5.10E01 12.7
LYM 14 7 12583. 1 D 0.23 5 8.75E01 7.2 LYM27 0 12871. 5 B 0.26 2 5.13E01 10.5
LYM 17 8 12164. 2 D 0.22 6 8.77E01 3 LYM44 11885. 4 B 0.28 1 5.16E01 18.5
LYM88 12191. 1 D 0.22 5 9.11E01 2.2 LYM 11 9 12462. 2 B 0.36 1 5.34E01 52.2
LYM89 12214. 4 D 0.22 1 9.16E01 0.7 LYM 13 0 12332. 2 B 0.27 5 5.42E01 15.9
LYM 14 9 12344. 2 D 0.22 7 9.29E01 3.5 LYM21 2 13034. 9 B 0.25 6 5.42E01 8
LYM 14 7 12581. 4 D 0.22 3 9.55E01 1.6 LYM 14 2 12804. 3 B 0.25 9 5.43E01 9.3
LYM 17 5 12651. 4 D 0.22 2 9.80E01 1 LYM 19 7 12824. 7 B 0.29 3 5.46E01 23.2
CONTR OL D 0.22 0 LYM22 0 12851. 13 B 0.26 2 5.67E01 10.3
LYM 10 7 12633. 4 E 9.18 8 1.23E03 8.4 LYM 19 8 13002. 5 B 0.28 2 5.80E01 18.8
LYM20 6 12603. 3 E 9.18 8 1.23E03 8.4 LYM 13 7 12151. 2 B 0.25 2 5.93E01 6.1
LYM88 12193. 1 E 9.06 3 3.77E03 6.9 LYM 18 3 12993. 7 B 0.27 7 6.04E01 16.7
LYM6 11734. 3 E 9.12 5 2.59E02 7.7 LYM21 2 13034. 8 B 0.29 4 6.34E01 23.8
LYM 15 7 13341. 4 E 8.81 3 4.79E02 4 LYM22 0 12852. 2 B 0.26 1 6.54E01 10.1
LYM28 3 13304. 4 E 8.81 3 4.79E02 4 LYM 13 0 12331. 3 B 0.28 4 6.60E01 19.6
LYM 17 8 12164. 3 E 8.87 5 9.63E02 4.7 LYM28 8 12744. 6 B 0.25 8 6.65E01 8.8
LYM90 12393. 1 E 9.06 3 1.17E01 6.9 LYM29 1 12753. 6 B 0.24 9 6.65E01 5.1
240
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM90 12395. 1 E 9.12 5 1.79E01 7.7 LYM 13 8 12564. 1 B 0.25 9 6.70E01 9
LYM25 0 12613. 4 E 8.68 8 1.79E01 2.5 LYM28 9 12492. 2 B 0.26 3 6.79E01 10.6
LYM99 12243. 2 E 8.68 8 1.79E01 2.5 LYM20 1 12833. 7 B 0.28 1 6.89E01 18.5
LYM 10 7 12631. 4 E 8.75 2.07E01 3.2 LYM 13 0 12334. 1 B 0.24 7 7.13E- 01 4
LYM73 12623. 2 E 8.75 2.07E01 3.2 LYM 13 8 12562. 2 B 0.25 2 7.28E01 6.1
LYM90 12395. 3 E 9.18 8 3.34E01 8.4 LYM 14 2 12802. 7 B 0.24 6 7.38E01 3.5
LYM 14 7 12583. 3 E 8.68 8 4.46E01 2.5 LYM 13 0 12333. 1 B 0.25 7 7.42E01 8.2
LYM25 0 12614. 1 E 8.68 8 4.46E01 2.5 LYM 15 3 12323. 2 B 0.25 5 7.44E01 7.4
LYM 12 8 12642. 3 E 8.62 5 4.56E01 1.8 LYM 10 6 12142. 1 B 0.26 2 7.70E01 10.3
LYM 12 9 12573. 3 E 8.62 5 4.56E01 1.8 LYM27 0 12872. 5 B 0.24 4 7.99E01 2.7
LYM88 12191. 2 E 8.62 5 4.56E01 1.8 LYM 18 3 12994. 7 B 0.24 3 8.20E01 2.4
LYM89 12211. 4 E 8.62 5 4.56E01 1.8 LYM24 2 13053. 7 B 0.24 2 8.52E01 1.9
LYM99 12243. 1 E 8.62 5 4.56E01 1.8 LYM 18 3 12994. 8 B 0.24 3 8.58E01 2.2
LYM20 6 12603. 1 E 8.56 3 5.62E01 1 LYM29 1 12751. 7 B 0.24 3 8.65E01 2.4
LYM6 11733. 2 E 8.56 3 5.62E01 1 LYM28 7 12771. 6 B 0.24 1 8.75E01 1.6
LYM86 12182. 3 E 8.56 3 5.62E01 1 LYM44 11884. 3 B 0.24 6 9.08E01 3.8
LYM6 11735. 1 E 8.81 3 5.79E01 4 LYM27 0 12872. 7 B 0.24 5 9.08E01 3.2
LYM23 6 12591. 1 E 8.75 5.95E01 3.2 LYM25 5 13081. 5 B 0.24 4 9.17E01 3
LYM73 12623. 1 E 8.75 5.95E01 3.2 LYM27 0 12871. 8 B 0.23 8 9.96E01 0.1
LYM 17 8 12163. 3 E 8.68 8 6.19E- 01 2.5 CONTR OL B 0.23 7 0
LYM 14 7 12584. 4 E 8.56 3 7.37E01 1 LYM 10 2 12221. 2 C 3.18 1 7.20E05 59.4
LYM91 13283. 1 E 8.56 3 8.30E01 1 LYM 17 4 12411. 2 C 3.1 1.24E- 04 55.4
LYM23 6 12594. 3 E 8.62 5 8.51E- 01 1.8 LYM 11 1 12254. 4 C 3.5 1.46E- 04 75.4
LYM25 0 12613. 2 E 8.5 8.55E01 0.3 LYM 13 7 12151. 1 C 3.04 4 1.55E- 04 52.5
LYM 12 8 12641. 3 E 8.5 8.98E01 0.3 LYM 10 2 12222. 2 C 3.03 1 2.15E04 51.9
LYM20 6 12601. 2 E 8.5 8.98E01 0.3 LYM 19 8 13004. 6 C 2.96 9 2.68E04 48.8
241
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM23 6 12592. 3 E 8.5 8.98E01 0.3 LYM10 6 12144. 4 C 2.88 1 4.76E04 44.4
LYM15 9 13354. 5 E 8.52 1 9.20E01 0.5 LYM17 4 12414. 3 c 2.85 6 5.73E04 43.1
LYM12 9 12572. 4 E 8.5 9.40E01 0.3 LYM15 2 12373. 2 c 2.85 6 6.33E04 43.1
LYM17 5 12653. 3 E 8.5 9.40E01 0.3 LYM10 5 12297. 2 c 2.86 9 7.57E04 43.8
LYM17 8 12164. 2 E 8.5 9.40E01 0.3 LYM13 7 12152. 1 c 2.73 1 1.65E03 36.9
LYM99 12241. 1 E 8.5 9.40E01 0.3 LYM10 0 12134. 1 c 2.88 1 1.87E- 03 44.4
LYM15 7 13342. 4 E 8.5 9.59E01 0.3 LYM10 7 12632. 1 c 2.91 3 2.19E03 46
CONTR OL E 8.47 5 0 LYM10 5 12294. 3 c 2.8 2.39E03 40.3
LYM20 6 12603. 3 F 0.57 9 5.70E05 43 LYM10 7 12631. 1 c 2.68 8 2.68E03 34.7
LYM23 6 12592. 3 F 0.48 7 6.32E03 20.3 LYM10 7 12632. 3 c 3.3 3.16E- 03 65.4
LYM73 12623. 1 F 0.44 2 1.25E01 9.2 LYM10 7 12631. 2 c 2.68 1 6.82E03 34.4
LYM12 9 12572. 4 F 0.44 2 1.62E01 9.1 LYM10 0 12133. 3 c 3.29 4 7.28E03 65.1
LYM73 12623. 2 F 0.43 8 1.80E01 8 LYM19 7 12824. 4 c 2.73 8 9.52E03 37.2
LYM15 9 13354. 6 F 0.44 3 1.85E01 9.4 LYM10 6 12141. 4 c 3.67 5 1.04E02 84.2
LYM20 6 12603. 1 F 0.45 6 1.88E01 12.6 LYM15 2 12373. 1 c 2.5 1.15E02 25.3
LYM25 0 12613. 4 F 0.53 3 2.23E01 31.6 LYM14 3 12523. 4 c 2.55 6 1.22E02 28.1
LYM14 7 12583. 3 F 0.43 4 2.25E01 7.1 LYM11 1 12251. 1 c 3.52 5 1.30E02 76.7
LYM90 12395. 3 F 0.43 2 2.54E01 6.6 LYM29 1 12754. 9 c 4.03 1 1.90E02 102
LYM90 12395. 1 F 0.45 9 2.58E01 13.2 LYM14 2 12804. 1 c 2.49 4 2.73E02 25
LYM17 8 12163. 4 F 0.48 7 2.76E01 20.2 LYM10 2 12221. 1 c 2.81 3 3.28E02 41
LYM89 12211. 4 F 0.43 3 2.87E01 7 LYM28 8 12744. 7 c 2.63 8 3.46E02 32.2
LYM25 0 12614. 1 F 0.42 9 3.05E01 5.8 LYM10 0 12131. 2 c 3.15 4 3.50E02 58
LYM10 7 12633. 4 F 0.48 7 3.08E01 20.2 LYM11 1 12254. 3 c 2.56 3 3.71E- 02 28.4
LYM23 6 12591. 1 F 0.48 1 3.14E- 01 18.8 LYM10 5 12297. 1 c 3.26 9 4.57E02 63.8
LYM88 12193. 1 F 0.49 3.39E01 20.9 LYM21 2 13031. 5 c 2.35 4 4.66E02 18
LYM23 6 12594. 3 F 0.46 3.51E- 01 13.6 LYM18 3 12991. 7 c 2.45 6 4.75E02 23.1
242
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM99 12243. 1 F 0.49 6 3.78E01 22.5 LYM10 2 12222. 1 C 3.55 6 5.16E02 78.2
LYM6 11735. 1 F 0.48 2 4.20E01 19.1 LYM14 3 12524. 5 c 2.75 6 5.74E02 38.1
LYM17 8 12161. 2 F 0.46 5 4.22E01 14.9 LYM10 2 12222. 3 c 3.76 9 6.05E02 88.9
LYM25 0 12614. 2 F 0.45 2 4.40E01 11.5 LYM10 5 12293. 1 c 2.41 9 6.23E02 21.2
LYM15 7 13341. 4 F 0.43 5 4.48E01 7.4 LYM27 0 12871. 5 c 2.32 1 6.49E02 16.3
LYM17 5 12654. 4 F 0.47 2 4.48E01 16.5 LYM15 3 12324. 2 c 2.31 3 7.05E02 15.9
LYM12 9 12573. 5 F 0.45 7 4.50E01 12.9 LYM10 0 12133. 1 c 3.28 8 7.40E02 64.8
LYM20 6 12603. 2 F 0.42 2 4.75E01 4.3 LYM10 6 12142. 3 c 3.03 8 8.14E02 52.2
LYM12 8 12641. 1 F 0.42 4 4.85E01 4.7 LYM15 2 12372. 2 c 2.60 5 9.07E02 30.6
LYM17 8 12163. 3 F 0.44 1 4.99E01 8.9 LYM17 4 12414. 2 c 3.1 9.40E02 55.4
LYM20 6 12601. 2 F 0.5 5.39E01 23.5 LYM17 4 12412. 1 c 3.26 9 1.06E01 63.8
LYM88 12191. 2 F 0.44 6 6.11E01 10.2 LYM10 6 12144. 3 c 2.81 3 1.07E01 41
LYM15 9 13354. 5 F 0.41 6 7.19E01 2.8 LYM27 0 12872. 5 c 2.37 5 1.14E01 19
LYM12 9 12573. 3 F 0.41 8 7.51E01 3.1 LYM13 8 12566. 1 c 2.83 8 1.14E01 42.2
LYM89 12214. 3 F 0.41 2 8.15E01 1.7 LYM13 8 12561. 3 c 2.61 9 1.21E01 31.2
LYM89 12214. 2 F 0.42 2 8.16E01 4.1 LYM17 3 12981. 8 c 2.26 3 1.25E01 13.4
LYM28 3 13304. 4 F 0.42 8.23E01 3.8 LYM28 9 12491. 1 c 2.9 1.26E01 45.3
LYM23 6 12592. 4 F 0.42 5 8.29E01 5 LYM14 3 12521. 1 c 2.61 3 1.32E01 30.9
LYM25 0 12611. 3 F 0.41 6 8.42E01 2.7 LYM17 3 12982. 6 c 2.86 3 1.34E01 43.5
LYM10 7 12631. 4 F 0.40 9 9.12E01 0.9 LYM21 2 13032. 8 c 2.43 8 1.36E01 22.2
LYM90 12393. 1 F 0.41 1 9.45E01 1.4 LYM13 8 12562. 1 c 2.56 9 1.40E01 28.7
LYM15 9 13352. 4 F 0.40 7 9.49E01 0.4 LYM21 2 13034. 9 c 2.24 4 1.40E01 12.5
LYM91 13284. 3 F 0.41 9.52E01 1.2 LYM10 6 12142. 2 c 3.73 1 1.41E01 87
LYM91 13283. 4 F 0.41 1 9.54E01 1.4 LYM15 3 12324. 1 c 2.83 1 1.48E01 41.9
CONTR OL F 0.40 5 0 LYM10 0 12131. 3 c 2.85 6 1.54E01 43.1
LYM6 11734. 3 G 9.53 2.63E01 9.9 LYM10 7 12631. 4 c 4.22 1 1.57E01 111.6
243
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM20 6 12603. 3 G 9.77 2 3.62E01 12.7 LYM28 9 12493. 2 C 2.23 1 1.58E01 11.8
LYM23 6 12591. 1 G 9.15 7 4.16E01 5.6 LYM15 2 12371. 2 c 2.73 1 1.62E01 36.9
LYM99 12243. 1 G 9.09 6 4.92E01 4.9 LYM22 0 12851. 8 c 2.8 1.62E01 40.3
LYM20 6 12601. 2 G 9.11 5.79E01 5 LYM22 0 12851. 12 c 2.24 4 1.69E01 12.5
LYM25 0 12614. 2 G 8.90 5 6.05E01 2.7 LYM13 8 12561. 1 c 3.11 9 1.71E01 56.3
LYM15 9 13354. 5 G 8.84 5 6.87E01 2 LYM13 7 12151. 2 c 2.28 8 1.75E01 14.6
LYM23 6 12592. 3 G 9.01 3 8.02E01 3.9 LYM14 2 12802. 9 c 2.73 8 1.81E01 37.2
LYM17 5 12654. 4 G 8.97 4 8.11E01 3.5 LYM11 1 12252. 2 c 3.17 5 2.04E01 59.1
LYM25 0 12613. 4 G 8.91 3 8.18E01 2.8 LYM10 2 12222. 6 c 4.18 8 2.20E01 109.9
LYM91 13284. 4 G 8.87 7 8.65E01 2.4 LYM14 2 12801. 8 c 2.19 4 2.26E01 9.9
LYM20 6 12603. 1 G 8.75 8.71E01 0.9 LYM10 5 12294. 2 c 2.72 5 2.36E01 36.6
LYM6 11733. 2 G 8.89 1 8.75E01 2.5 LYM28 8 12743. 9 c 2.64 4 2.36E01 32.5
LYM14 7 12584. 4 G 8.74 7 9.59E01 0.9 LYM10 7 12633. 4 c 2.96 9 2.38E01 48.8
LYM17 5 12651. 4 G 8.74 8 9.72E01 0.9 LYM11 1 12251. 3 c 2.93 8 2.59E01 47.2
LYM17 5 12654. 6 G 8.69 7 9.75E01 0.3 LYM14 3 12524. 7 c 2.36 9 2.68E01 18.7
CONTR OL G 8.67 3 0 LYM22 0 12852. 4 c 2.19 4 2.78E01 9.9
LYM10 7 12631. 4 H 14.1 58 3.91E03 35.7 LYM19 8 13002. 6 c 3.35 6 2.79E01 68.2
LYM14 7 12583. 3 H 13.5 34 8.52E03 29.7 LYM20 8 13012. 8 c 2.65 2.79E01 32.8
LYM23 6 12592. 3 H 13.4 87 9.09E03 29.3 LYM28 8 12743. 8 c 2.35 6 2.80E01 18.1
LYM90 12395. 1 H 13.7 8 1.94E02 32.1 LYM17 3 12982. 7 c 2.72 5 2.82E01 36.6
LYM12 9 12572. 4 H 12.8 66 2.83E02 23.3 LYM28 9 12491. 4 c 2.77 5 2.83E01 39.1
LYM20 6 12603. 1 H 13.4 05 4.09E02 28.5 LYM11 9 12463. 2 c 2.89 4 2.84E01 45
LYM14 7 12584. 4 H 12.6 29 4.40E02 21 LYM90 12392. 1 c 2.47 5 2.89E01 24
LYM88 12194. 2 H 12.5 15 4.87E02 20 LYM13 7 12153. 1 c 2.58 8 2.97E01 29.7
LYM6 11736. 1 H 12.3 91 5.69E02 18.8 LYM28 8 12741. 9 c 2.31 9 2.97E01 16.2
LYM89 12211. 4 H 12.7 71 6.74E02 22.4 LYM22 0 12852. 2 c 2.26 9 3.14E01 13.7
244
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM90 12395. 3 H 14.3 16 6.99E02 37.2 LYM14 2 12803. 6 C 3.26 3 3.16E01 63.5
LYM73 12623. 2 H 12.2 01 8.98E02 16.9 LYM28 7 12773. 7 c 2.46 9 3.34E01 23.7
LYM86 12182. 3 H 12.1 23 9.17E02 16.2 LYM14 3 12521. 2 c 2.22 5 3.47E01 11.5
LYM12 8 12641. 3 H 12.2 49 1.00E01 17.4 LYM15 2 12371. 3 c 2.62 5 3.48E01 31.6
LYM20 6 12603. 3 H 17.8 74 1.01E01 71.3 LYM21 2 13031. 6 c 2.46 9 3.77E01 23.7
LYM99 12243. 2 H 12.4 1 1.03E01 18.9 LYM17 3 12981. 6 c 2.47 5 3.79E01 24
LYM17 8 12163. 4 H 12.8 11 1.54E01 22.8 LYM25 5 13082. 7 c 2.16 9 3.81E01 8.7
LYM15 9 13354. 6 H 12.1 93 1.55E01 16.9 LYM10 5 12295. 2 c 2.84 4 3.99E01 42.5
LYM23 6 12594. 3 H 11.8 84 1.59E01 13.9 LYM13 7 12151. 4 c 3.00 6 4.08E01 50.7
LYM88 12193. 1 H 14.7 78 1.60E01 41.6 LYM11 9 12461. 1 c 2.28 1 4.10E01 14.3
LYM17 8 12164. 3 H 12.0 31 1.81E01 15.3 LYM19 8 13002. 5 c 2.61 9 4.15E01 31.2
LYM25 0 12614. 1 H 12.0 94 2.04E01 15.9 LYM11 1 12251. 4 c 3.27 5 4.15E01 64.1
LYM25 0 12613. 4 H 16.0 68 2.07E01 54 LYM13 8 12564. 1 c 2.26 3 4.26E01 13.4
LYM25 0 12613. 2 H 11.6 28 2.09E01 11.5 LYM20 8 13013. 6 c 2.81 9 4.34E01 41.3
LYM73 12623. 1 H 12.0 01 2.10E01 15 LYM18 3 12994. 8 c 2.25 6 4.45E01 13.1
LYM88 12191. 2 H 13.6 05 2.15E01 30.4 LYM15 3 12321. 2 c 2.63 8 4.50E01 32.2
LYM99 12243. 1 H 14.7 65 2.34E01 41.5 LYM14 3 12524. 2 c 2.51 9 4.55E01 26.2
LYM10 7 12633. 4 H 15.4 36 2.76E01 47.9 LYM28 9 12492. 2 c 2.48 1 4.61E01 24.4
LYM17 8 12163. 3 H 13.5 89 2.92E01 30.2 LYM24 2 13051. 8 c 2.40 6 4.75E01 20.6
LYM6 11735. 1 H 15.0 04 3.12E01 43.8 LYM18 3 12994. 7 c 2.43 1 4.77E01 21.8
LYM17 8 12161. 2 H 12.5 7 3.13E01 20.5 LYM25 5 13082. 5 c 2.16 3 4.79E01 8.4
LYM12 8 12642. 3 H 12.5 01 3.37E01 19.8 LYM28 7 12771. 6 c 2.23 1 4.83E01 11.8
LYM12 9 12573. 3 H 12.9 31 3.61E01 23.9 LYM17 3 12981. 5 c 2.33 1 4.84E01 16.8
LYM20 6 12601. 2 H 17.0 33 3.65E01 63.2 LYM28 8 12744. 6 c 2.20 6 4.86E01 10.6
LYM12 9 12573. 5 H 13.6 92 3.66E01 31.2 LYM22 0 12851. 11 c 2.22 9 5.02E01 11.7
LYM89 12214. 2 H 13.5 53 4.00E01 29.9 LYM29 1 12751. 7 c 2.20 6 5.06E01 10.6
245
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 5 12651. 2 H 11.2 66 4.15E01 8 LYM25 5 13082. 9 C 2.39 4 5.08E01 20
LYM6 11734. 3 H 11.4 61 4.19E01 9.8 LYM22 0 12851. 13 c 2.17 5 5.17E01 9
LYM90 12392. 1 H 11.1 66 4.25E01 7 LYM29 1 12753. 6 c 2.22 5 5.20E01 11.5
LYM23 6 12591. 1 H 13.1 66 4.56E01 26.2 LYM44 11884. 1 c 2.15 5.32E01 7.8
LYM15 7 13341. 4 H 11.1 31 4.73E01 6.7 LYM13 0 12332. 2 c 2.21 9 5.39E01 11.2
LYM90 12393. 1 H 12.6 01 4.83E01 20.8 LYM19 7 12824. 7 c 2.62 5 5.42E01 31.6
LYM89 12214. 3 H 12.1 81 5.09E01 16.7 LYM11 9 12462. 2 c 2.92 5 5.45E01 46.6
LYM25 0 12614. 2 H 11.8 89 5.16E01 14 LYM24 2 13053. 7 c 2.09 4 5.53E01 4.9
LYM91 13284. 3 H 11.7 62 5.45E01 12.7 LYM44 11885. 4 c 2.35 5.71E01 17.8
LYM28 3 13304. 4 H 12.3 29 5.80E01 18.2 LYM13 7 12154. 5 c 2.31 9 5.87E01 16.2
LYM86 12183. 1 H 11.5 69 5.87E01 10.9 LYM13 0 12331. 3 c 2.5 6.12E01 25.3
LYM23 6 12592. 4 H 12.5 2 5.99E01 20 LYM14 2 12804. 3 c 2.15 6 6.19E01 8.1
LYM6 11733. 2 H 11.3 09 6.05E01 8.4 LYM27 0 12871. 7 c 2.2 6.64E01 10.3
LYM25 0 12611. 3 H 12.0 99 6.19E01 16 LYM17 4 12411. 3 c 2.15 6.66E01 7.8
LYM17 5 12654. 6 H 11.2 42 6.78E01 7.7 LYM18 3 12993. 7 c 2.22 5 6.77E01 11.5
LYM17 5 12654. 4 H 12.1 26 6.86E01 16.2 LYM13 8 12562. 2 c 2.18 1 6.86E01 9.3
LYM20 6 12603. 2 H 10.7 74 7.04E01 3.3 LYM21 2 13034. 8 c 2.31 3 6.90E01 15.9
LYM12 8 12641. 1 H 11.4 1 7.15E01 9.4 LYM27 0 12872. 7 c 2.16 9 7.14E01 8.7
LYM91 13283. 4 H 11.7 98 7.22E01 13.1 LYM13 0 12333. 1 c 2.29 4 7.33E01 15
LYM14 7 12584. 5 H 10.7 33 7.53E01 2.9 LYM15 3 12323. 2 c 2.18 8 7.44E01 9.6
LYM20 6 12601. 3 H 10.7 04 7.86E01 2.6 LYM10 6 12142. 1 c 2.36 3 7.50E01 18.4
LYM15 7 13342. 4 H 11.4 48 7.87E01 9.7 LYM13 0 12334. 1 c 2.05 7.51E01 2.7
LYM14 7 12583. 1 H 11.5 45 8.28E01 10.7 LYM19 8 13002. 8 c 2.21 3 7.61E01 10.9
LYM86 12183. 3 H 10.6 56 8.33E01 2.1 LYM28 7 12771. 7 c 2.06 3 8.00E01 3.4
LYM17 8 12164. 2 H 10.8 38 8.72E01 3.9 LYM44 11882. 1 c 2.10 6 8.42E01 5.6
LYM91 13283. 1 H 10.5 14 9.28E01 0.8 LYM19 8 13005. 6 c 2.06 3 8.64E01 3.4
246
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM73 12622. 2 H 10.7 58 9.28E01 3.1 LYM29 1 12751. 2 C 2.04 2 8.80E01 2.3
LYM14 9 12344. 2 H 10.7 64 9.42E01 3.2 LYM20 1 12833. 7 c 2.08 8 8.82E01 4.6
CONTR OL H 10.4 34 0 LYM44 11884. 3 c 2.06 9 9.05E01 3.7
LYM20 6 12603. 3 J 0.04 2 2.32E03 61.6 LYM44 11885. 3 c 2.01 3 9.12E01 0.9
LYM25 0 12613. 4 J 0.03 8 1.29E02 47.8 LYM90 12394. 2 c 2.00 6 9.59E01 0.5
LYM20 6 12601. 2 J 0.03 9 2.60E02 48.5 LYM25 5 13082. 8 c 2 9.86E01 0.2
LYM10 7 12633. 4 J 0.03 7 2.93E02 43.3 CONTR OL c 1.99 5 0
LYM6 11735. 1 J 0.03 5 4.68E02 36.2 LYM10 2 12222. 2 D 0.26 5 6.00E06 40
LYM99 12243. 1 J 0.03 5 5.89E02 35.2 LYM28 8 12743. 9 D 0.26 4 1.70E- 05 39.2
LYM88 12191. 2 J 0.03 5 6.27E02 32.8 LYM17 3 12981. 6 D 0.24 8 9.60E05 31
LYM12 9 12573. 5 J 0.03 5 7.06E02 33.1 LYM13 8 12561. 3 D 0.31 1.04E- 04 63.6
LYM23 6 12592. 3 J 0.03 4 7.96E02 30.2 LYM10 7 12631. 4 D 0.23 9 1.13E- 04 26.3
LYM89 12214. 2 J 0.03 4 8.48E02 31.2 LYM10 5 12297. 2 D 0.24 2.13E04 26.7
LYM90 12395. 3 J 0.03 3 8.93E02 28.3 LYM13 0 12332. 1 D 0.28 3 2.74E03 49.6
LYM12 9 12572. 4 J 0.03 3 1.15E- 01 27.1 LYM28 9 12493. 1 D 0.27 2 3.81E- 03 43.6
LYM17 8 12163. 4 J 0.03 3 1.22E- 01 25.9 LYM13 0 12334. 1 D 0.23 4.39E03 21.6
LYM14 7 12583. 3 J 0.03 3 1.28E- 01 25.3 LYM10 2 12222. 1 D 0.22 8 5.99E03 20.7
LYM23 6 12592. 4 J 0.03 3 1.43E- 01 28.1 LYM25 5 13082. 8 D 0.25 2 6.25E03 33.3
LYM10 7 12631. 4 J 0.03 2 1.44E- 01 24.3 LYM10 6 12144. 4 D 0.25 8 6.35E03 36.4
LYM89 12211. 4 J 0.03 2 1.56E- 01 23.7 LYM10 7 12631. 2 D 0.21 6 6.37E03 14.2
LYM6 11736. 1 J 0.03 2 1.66E- 01 24.2 LYM15 3 12323. 2 D 0.28 2 7.68E03 49
LYM90 12395. 1 J 0.03 2 1.73E- 01 22.4 LYM10 5 12293. 1 D 0.27 8 1.12E02 47
LYM88 12193. 1 J 0.03 2 1.92E- 01 21.6 LYM20 1 12833. 7 D 0.21 2 1.16E02 12.1
LYM25 0 12611. 3 J 0.03 2 1.97E01 24.5 LYM11 9 12461. 4 D 0.30 1 1.22E02 59
LYM23 6 12591. 1 J 0.03 2 2.14E01 22.8 LYM28 7 12771. 6 D 0.21 9 1.38E02 15.5
LYM99 12243. 2 J 0.03 1 2.28E01 20.1 LYM10 5 12294. 2 D 0.24 8 1.47E02 31.1
247
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 8 12161. 2 J 0.03 1 2.32E01 20.1 LYM17 3 12982. 6 D 0.21 5 1.80E02 13.7
LYM17 8 12163. 3 J 0.03 1 2.45E01 20 LYM13 7 12153. 1 D 0.22 7 2.52E02 19.8
LYM20 6 12603. 1 J 0.03 1 2.53E01 19 LYM15 2 12373. 1 D 0.23 4 2.75E02 23.5
LYM15 9 13354. 6 J 0.03 1 2.78E01 18.6 LYM27 0 12873. 6 D 0.25 2 2.79E02 33.2
LYM12 9 12573. 3 J 0.03 1 2.87E01 18.4 LYM13 8 12561. 1 D 0.39 9 4.37E02 110.9
LYM17 5 12654. 4 J 0.03 1 2.90E01 19.4 LYM28 7 12774. 6 D 0.20 6 4.37E02 8.8
LYM90 12392. 1 J 0.03 3.06E01 16.4 LYM24 2 13052. 5 D 0.21 2 4.61E02 12.1
LYM91 13284. 3 J 0.03 1 3.18E- 01 17.4 LYM13 7 12151. 4 D 0.27 5.04E02 42.4
LYM15 9 13354. 5 J 0.03 3.56E01 15.4 LYM10 0 12133. 3 D 0.20 5 5.59E02 8.1
LYM89 12214. 3 J 0.03 3.58E01 15.8 LYM13 7 12151. 2 D 0.25 6.45E02 32.1
LYM25 0 12613. 2 J 0.03 3.76E01 14.5 LYM28 9 12492. 2 D 0.24 6 6.50E02 29.9
LYM23 6 12594. 3 J 0.02 9 4.45E01 12.5 LYM17 4 12414. 3 D 0.32 7.11E- 02 69
LYM15 7 13342. 4 J 0.03 4.61E01 14 LYM15 3 12322. 1 D 0.21 8 7.32E02 15.3
LYM91 13283. 4 J 0.02 9 4.75E01 13.2 LYM11 1 12254. 4 D 0.23 7.53E02 21.3
LYM73 12623. 2 J 0.02 9 4.77E01 11.7 LYM11 9 12463. 2 D 0.30 2 7.64E02 59.5
LYM17 5 12651. 2 J 0.02 9 4.79E01 11.9 LYM10 6 12142. 2 D 0.30 7 7.80E02 62.1
LYM6 11733. 2 J 0.02 9 4.88E01 11.9 LYM15 3 12324. 2 D 0.27 7.86E02 42.8
LYM86 12182. 3 J 0.02 9 4.94E01 11 LYM10 6 12141. 4 D 0.21 9 7.93E02 15.7
LYM28 3 13304. 4 J 0.02 9 5.17E- 01 11.3 LYM21 2 13032. 8 D 0.23 9 8.15E02 26.2
LYM90 12393. 1 J 0.02 9 5.43E01 10.3 LYM11 9 12461. 1 D 0.30 8 8.59E02 62.9
LYM73 12623. 1 J 0.02 9 5.45E01 9.8 LYM20 1 12833. 9 D 0.20 3 8.86E02 7.2
LYM12 8 12642. 3 J 0.02 9 5.62E01 9.5 LYM10 0 12131. 3 D 0.20 9 9.17E02 10.3
LYM73 12622. 2 J 0.02 9 5.64E01 10.5 LYM28 8 12743. 8 D 0.23 6 9.25E02 24.6
LYM25 0 12614. 2 J 0.02 8 5.82E01 9.3 LYM22 0 12851. 8 D 0.28 6 9.36E02 51.1
LYM86 12183. 1 J 0.02 8 6.07E01 8.6 LYM10 2 12222. 3 D 0.22 9 1.07E- 01 20.9
LYM86 12183. 3 J 0.02 8 6.17E- 01 8.1 LYM10 5 12295. 2 D 0.26 9 1.09E- 01 41.9
248
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM91 13283. 1 J 0.02 8 6.19E01 8 LYM17 4 12411. 2 D 0.27 6 1.10E01 45.9
LYM25 0 12614. 1 J 0.02 8 6.33E01 7.7 LYM28 9 12491. 1 D 0.20 1 1.29E01 6.1
LYM15 7 13341. 4 J 0.02 8 6.74E01 7.2 LYM13 7 12151. 1 D 0.25 3 1.36E01 33.5
LYM17 8 12164. 3 J 0.02 8 6.96E01 6.2 LYM13 8 12562. 2 D 0.24 6 1.48E01 29.8
LYM12 8 12641. 1 J 0.02 8 6.98E01 6.8 LYM10 7 12632. 3 D 0.29 8 1.51E01 57.5
LYM14 7 12584. 4 J 0.02 8 7.13E01 5.8 LYM10 5 12294. 3 D 0.22 6 1.59E01 19.4
LYM17 5 12651. 4 J 0.02 8 7.62E01 5.8 LYM11 9 12462. 1 D 0.27 8 1.80E01 47
LYM15 9 13352. 4 J 0.02 7 7.80E01 4.6 LYM15 3 12324. 1 D 0.28 3 1.89E01 49.3
LYM88 12194. 2 J 0.02 7 7.86E01 4.4 LYM28 8 12743. 5 D 0.27 4 1.92E01 44.7
LYM17 5 12654. 6 J 0.02 7 8.01E01 4.3 LYM17 4 12412. 1 D 0.28 2 2.01E01 48.9
LYM14 7 12583. 1 J 0.02 7 8.50E01 3.7 LYM21 2 13031. 6 D 0.21 1 2.07E01 11.6
LYM14 9 12344. 2 J 0.02 7 8.67E01 3.2 LYM19 7 12821. 6 D 0.22 4 2.15E01 18.1
LYM12 8 12641. 3 J 0.02 7 8.88E01 2.2 LYM10 7 12631. 1 D 0.22 5 2.32E01 18.8
LYM88 12191. 1 J 0.02 7 9.00E01 2.1 LYM90 12395. 3 D 0.23 2.34E01 21.4
LYM20 6 12601. 3 J 0.02 7 9.12E01 1.8 LYM24 2 13051. 8 D 0.22 3 2.35E01 17.6
LYM89 12214. 4 J 0.02 6 9.25E01 1.5 LYM17 3 12981. 5 D 0.22 7 2.35E01 19.7
LYM14 7 12584. 5 J 0.02 6 9.58E01 0.9 LYM13 0 12332. 2 D 0.24 6 2.46E01 29.8
LYM17 8 12164. 2 J 0.02 6 9.69E01 0.6 LYM11 1 12251. 1 D 0.20 3 2.49E01 7.1
LYM14 7 12581. 4 J 0.02 6 9.95E01 0.1 LYM17 4 12411. 3 D 0.29 9 2.57E01 57.9
CONTR OL J 0.02 6 0 LYM19 8 13005. 8 D 0.2 2.58E01 5.8
LYM15 7 13341. 4 K 0.69 7 6.89E02 22.1 LYM11 9 12462. 2 D 0.25 2.82E01 32
LYM88 12193. 1 K 0.61 7 4.88E01 8.1 LYM15 3 12321. 2 D 0.23 5 2.89E01 24.2
LYM73 12623. 2 K 0.60 5 6.11E01 6 LYM11 1 12252. 2 D 0.23 9 2.92E01 26.1
LYM10 7 12633. 4 K 0.60 4 6.16E01 5.8 LYM24 2 13053. 7 D 0.21 5 3.07E01 13.4
LYM15 9 13354. 8 K 0.60 3 6.36E01 5.6 LYM10 2 12221. 1 D 0.22 1 3.09E01 16.5
LYM90 12395. 3 K 0.6 6.64E01 5.1 LYM25 5 13082. 9 D 0.22 3.26E01 16
249
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 5 12654. 6 K 0.6 6.86E01 5.2 LYM25 5 13082. 5 D 0.28 3.38E01 47.9
LYM90 12393. 2 K 0.59 6 7.01E01 4.4 LYM14 2 12802. 9 D 0.23 3.43E01 21.4
LYM20 6 12603. 3 K 0.59 7 7.01E01 4.6 LYM28 8 12741. 9 D 0.22 9 3.44E01 21.2
LYM25 0 12613. 4 K 0.59 5 7.13E01 4.2 LYM10 6 12144. 3 D 0.24 3.50E01 26.6
LYM12 9 12572. 4 K 0.59 4 7.18E01 4.1 LYM15 2 12371. 2 D 0.28 1 3.62E01 48.6
LYM6 11734. 3 K 0.59 4 7.26E01 4.1 LYM25 5 13082. 7 D 0.25 2 3.81E01 32.9
LYM15 7 13342. 4 K 0.59 4 7.43E01 4.1 LYM10 6 12142. 3 D 0.20 8 3.88E01 9.9
LYM15 9 13351. 1 K 0.59 2 7.73E01 3.7 LYM13 8 12564. 1 D 0.23 1 4.04E01 22
LYM90 12395. 1 K 0.58 6 8.23E01 2.6 LYM28 9 12493. 2 D 0.25 4 4.06E01 34.4
LYM15 9 13354. 5 K 0.58 7 8.28E01 2.9 LYM15 2 12371. 3 D 0.23 3 4.09E01 22.8
LYM90 12393. 1 K 0.58 6 8.34E01 2.6 LYM10 7 12632. 1 D 0.21 8 4.39E01 14.9
LYM99 12243. 1 K 0.58 2 8.78E01 1.9 LYM29 1 12754. 9 D 0.24 4.58E01 26.9
LYM23 6 12591. 1 K 0.58 1 8.85E01 1.8 LYM20 1 12834. 6 D 0.21 4.77E01 10.8
LYM99 12241. 1 K 0.57 8 9.22E01 1.2 LYM10 2 12222. 6 D 0.21 5 5.01E01 13.5
LYM6 11733. 2 K 0.57 7 9.25E01 1.1 LYM18 3 12994. 8 D 0.23 3 5.40E01 23.1
CONTR OL K 0.57 1 0 LYM29 1 12753. 6 D 0.21 1 5.42E01 11.2
LYM20 6 12603. 3 L 2.30 3 1.34E03 74.3 LYM13 0 12331. 3 D 0.24 2 5.46E01 27.6
LYM25 0 12613. 4 L 2.05 4 9.93E03 55.4 LYM28 7 12771. 7 D 0.2 5.49E01 5.6
LYM20 6 12601. 2 L 2.13 7 1.29E02 61.7 LYM28 9 12491. 4 D 0.19 6 5.53E01 3.5
LYM10 7 12633. 4 L 1.94 7 3.16E02 47.3 LYM13 0 12333. 1 D 0.21 3 5.99E01 12.3
LYM6 11735. 1 L 1.89 8 4.09E02 43.6 LYM14 3 12524. 7 D 0.23 1 6.05E01 21.8
LYM99 12243. 1 L 1.86 1 4.63E02 40.8 LYM13 7 12154. 5 D 0.23 6.26E01 21.2
LYM88 12193. 1 L 1.80 6 6.33E02 36.6 LYM11 1 12251. 4 D 0.19 6 6.28E01 3.4
LYM90 12395. 3 L 1.79 4 6.59E02 35.8 LYM18 3 12993. 7 D 0.20 5 6.65E01 8.1
LYM10 7 12631. 4 L 1.73 3 1.04E01 31.1 LYM18 3 12993. 5 D 0.20 5 6.71E01 8.2
LYM88 12191. 2 L 1.73 3 1.17E01 31.1 LYM28 7 12773. 7 D 0.20 5 6.87E01 8.5
250
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 12 9 12573. 5 L 1.74 9 1.18E01 32.3 LYM27 0 12871. 5 D 0.22 7.04E01 15.9
LYM23 6 12592. 3 L 1.72 4 1.21E01 30.4 LYM 14 2 12801. 8 D 0.19 6 7.32E01 3.7
LYM90 12395. 1 L 1.70 8 1.26E01 29.2 LYM 14 3 12524. 5 D 0.21 4 7.37E01 13.1
LYM 14 7 12583. 3 L 1.69 6 1.38E01 28.3 LYM27 0 12871. 7 D 0.19 7 7.40E01 3.8
LYM89 12214. 2 L 1.71 5 1.44E01 29.8 LYM 17 3 12981. 8 D 0.2 7.60E01 5.4
LYM 12 9 12572. 4 L 1.66 3 1.82E01 25.9 LYM44 11885. 4 D 0.19 9 7.63E01 5.2
LYM 17 8 12163. 3 L 1.66 7 1.88E01 26.2 LYM20 8 13012. 5 D 0.20 9 7.67E01 10.3
LYM20 6 12603. 1 L 1.65 1.92E01 24.8 LYM 14 3 12521. 1 D 0.19 2 7.71E01 1.2
LYM23 6 12591. 1 L 1.66 1 2.18E01 25.7 LYM21 2 13034. 9 D 0.21 1 7.93E01 11.3
LYM89 12211. 4 L 1.61 2.51E01 21.8 LYM 17 3 12982. 7 D 0.20 5 8.10E01 8.3
LYM23 6 12592. 4 L 1.62 4 2.79E01 22.9 LYM 19 8 13004. 6 D 0.19 1 8.26E01 1
LYM 12 9 12573. 3 L 1.60 2 2.85E01 21.2 LYM 14 2 12804. 3 D 0.19 8 8.80E01 4.7
LYM 17 8 12163. 4 L 1.57 9 3.05E01 19.5 LYM25 5 13081. 5 D 0.19 7 8.86E01 4.2
LYM6 11736. 1 L 1.57 9 3.15E01 19.5 LYM 19 7 12822. 7 D 0.19 6 8.90E01 3.2
LYM99 12243. 2 L 1.56 2 3.36E01 18.2 LYM27 0 12871. 8 D 0.19 6 9.09E01 3.3
LYM 14 7 12584. 4 L 1.54 7 3.54E01 17.1 LYM27 0 12872. 7 D 0.19 3 9.10E01 2
LYM 15 9 13354. 6 L 1.55 8 3.54E01 17.9 LYM 17 4 12414. 2 D 0.19 9.23E01 0.4
LYM 17 8 12161. 2 L 1.55 6 3.55E01 17.7 LYM 11 1 12251. 3 D 0.19 9.75E01 0.3
LYM90 12393. 1 L 1.56 1 3.57E01 18.1 LYM 10 5 12297. 1 D 0.19 9.79E01 0.4
LYM88 12194. 2 L 1.54 6 3.63E01 17 LYM 18 3 12994. 7 D 0.19 9.91E01 0.1
LYM25 0 12611. 3 L 1.54 6 4.06E01 17 CONTR OL D 0.18 9 0
LYM 12 8 12642. 3 L 1.52 4 4.21E01 15.3 LYM 13 8 12561. 1 E 9 2.20E03 10.8
LYM28 3 13304. 4 L 1.53 2 4.27E01 15.9 LYM 13 0 12332. 1 E 8.93 8 3.29E03 10
LYM 17 5 12654. 4 L 1.54 4 4.29E01 16.8 LYM 11 9 12461. 4 E 9 7.75E03 10.8
LYM73 12623. 2 L 1.52 4.29E01 15 LYM 13 0 12334. 1 E 9 7.75E03 10.8
LYM25 0 12614. 1 L 1.51 6 4.32E01 14.7 LYM 15 3 12323. 2 E 9 7.75E03 10.8
251
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM89 12214. 3 L 1.52 3 4.32E01 15.2 LYM 17 4 12412. 1 E 8.62 5 3.12E02 6.2
LYM86 12182. 3 L 1.51 4.46E01 14.2 LYM25 5 13082. 8 E 8.75 3.12E02 7.7
LYM73 12623. 1 L 1.49 8 4.75E01 13.3 LYM25 5 13082. 7 E 8.56 3 5.65E02 5.4
LYM 17 8 12164. 3 L 1.48 9 4.93E01 12.7 LYM 13 0 12332. 2 E 9 9.08E02 10.8
LYM25 0 12614. 2 L 1.49 9 4.94E01 13.4 LYM 11 9 12461. 1 E 8.68 8 1.11E01 6.9
LYM23 6 12594. 3 L 1.49 5.02E01 12.7 LYM22 0 12851. 8 E 8.87 5 1.21E01 9.2
LYM91 13284. 3 L 1.49 2 5.06E01 12.9 LYM 15 3 12324. 1 E 9.06 3 1.37E01 11.5
LYM91 13283. 4 L 1.49 5 5.25E01 13.1 LYM 17 4 12414. 3 E 9.06 3 1.37E01 11.5
LYM 12 8 12641. 3 L 1.46 8 5.48E01 11.1 LYM 10 6 12141. 4 E 8.5 1.45E01 4.6
LYM6 11733. 2 L 1.45 9 5.91E01 10.4 LYM28 7 12771. 6 E 8.5 1.45E01 4.6
LYM25 0 12613. 2 L 1.45 4 5.93E01 10 LYM 10 5 12297. 2 E 8.75 1.65E01 7.7
LYM 17 5 12651. 2 L 1.45 2 6.05E01 9.9 LYM 10 7 12631. 4 E 8.54 5 1.71E01 5.2
LYM 17 5 12654. 6 L 1.45 2 6.13E01 9.9 LYM 10 5 12295. 2 E 8.56 3 1.84E01 5.4
LYM 15 7 13342. 4 L 1.45 4 6.29E01 10 LYM 10 7 12631. 2 E 8.56 3 1.84E01 5.4
LYM 12 8 12641. 1 L 1.44 6 6.33E01 9.4 LYM 11 1 12252. 2 E 8.56 3 1.84E01 5.4
LYM86 12183. 1 L 1.43 2 6.61E01 8.4 LYM 14 3 12524. 7 E 8.37 5 2.21E01 3.1
LYM 15 7 13341. 4 L 1.43 2 6.63E01 8.3 LYM28 9 12493. 2 E 8.87 5 2.51E01 9.2
LYM 14 7 12583. 1 L 1.43 1 7.05E01 8.2 LYM 13 7 12153. 1 E 8.68 8 2.75E01 6.9
LYM90 12392. 1 L 1.40 6 7.24E01 6.4 LYM 15 2 12371. 2 E 8.37 5 3.07E01 3.1
LYM6 11734. 3 L 1.40 5 7.36E01 6.3 LYM28 9 12491. 1 E 8.37 5 3.07E01 3.1
LYM73 12622. 2 L 1.40 2 7.68E01 6.1 LYM 13 8 12562. 2 E 8.43 8 3.12E01 3.8
LYM20 6 12603. 2 L 1.36 1 8.74E01 3 LYM29 1 12754. 9 E 8.43 8 3.12E01 3.8
LYM91 13283. 1 L 1.34 3 9.30E01 1.6 LYM 11 9 12462. 1 E 8.81 3 3.33E01 8.5
LYM 14 9 12344. 2 L 1.34 2 9.41E01 1.6 LYM 10 2 12222. 6 E 8.5 3.37E01 4.6
LYM 17 8 12164. 2 L 1.33 7 9.51E01 1.2 LYM 17 4 12411. 3 E 8.5 3.37E01 4.6
LYM86 12183. 3 L 1.33 9.73E01 0.6 LYM28 8 12741. 9 E 8.87 5 3.53E01 9.2
252
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 9 13352. 4 L 1.33 9.74E01 0.6 LYM 11 1 12254. 4 E 8.31 3 3.67E01 2.3
CONTR OL L 1.32 2 0 LYM 11 9 12462. 2 E 8.81 3 4.24E01 8.5
LYM20 6 12603. 3 M 0.28 8 1.32E- 03 69.7 LYM 13 7 12154. 5 E 8.62 5 4.90E01 6.2
LYM25 0 12613. 4 M 0.25 7 1.04E02 51.3 LYM 13 7 12151. 2 E 8.68 8 4.92E01 6.9
LYM20 6 12601. 2 M 0.26 7 1.40E02 57.5 LYM 13 8 12561. 3 E 8.81 3 4.94E01 8.5
LYM 10 7 12633. 4 M 0.24 3 3.48E02 43.4 LYM 17 4 12411. 2 E 8.31 3 5.23E01 2.3
LYM6 11735. 1 M 0.23 7 4.53E02 39.8 LYM28 8 12743. 9 E 8.31 3 5.23E01 2.3
LYM99 12243. 1 M 0.23 3 5.12E- 02 37.1 LYM 11 9 12463. 2 E 8.56 3 5.75E01 5.4
LYM88 12193. 1 M 0.22 6 7.05E02 33.1 LYM28 9 12493. 1 E 8.56 3 5.75E01 5.4
LYM90 12395. 3 M 0.22 4 7.35E02 32.2 LYM 10 6 12144. 4 E 8.5 5.87E01 4.6
LYM 10 7 12631. 4 M 0.21 7 1.17E- 01 27.7 LYM 10 2 12222. 3 E 8.25 5.97E01 1.5
LYM88 12191. 2 M 0.21 7 1.33E- 01 27.6 LYM24 2 13051. 8 E 8.25 5.97E01 1.5
LYM 12 9 12573. 5 M 0.21 9 1.34E- 01 28.8 LYM 13 7 12151. 1 E 8.62 5 6.24E01 6.2
LYM23 6 12592. 3 M 0.21 5 1.38E- 01 27 LYM 13 0 12331. 3 E 8.37 5 7.06E01 3.1
LYM90 12395. 1 M 0.21 4 1.44E- 01 25.9 LYM24 2 13052. 5 E 8.25 7.22E01 1.5
LYM 14 7 12583. 3 M 0.21 2 1.57E- 01 24.9 LYM28 9 12491. 4 E 8.25 7.22E01 1.5
LYM89 12214. 2 M 0.21 4 1.65E- 01 26.3 LYM44 11885. 4 E 8.25 7.22E01 1.5
LYM 17 8 12163. 4 M 0.21 1.72E- 01 24 LYM 10 6 12144. 3 E 8.37 5 7.96E01 3.1
LYM 12 9 12572. 4 M 0.20 8 2.08E01 22.6 LYM 10 6 12142. 2 E 8.25 8.01E- 01 1.5
LYM 17 8 12163. 3 M 0.20 8 2.16E01 22.8 LYM 13 8 12564. 1 E 8.25 8.01E- 01 1.5
LYM20 6 12603. 1 M 0.20 6 2.21E01 21.5 LYM 18 3 12993. 7 E 8.25 8.01E- 01 1.5
LYM23 6 12591. 1 M 0.20 8 2.50E01 22.4 LYM25 5 13082. 5 E 8.25 8.01E- 01 1.5
LYM89 12211. 4 M 0.20 1 2.90E01 18.6 LYM28 8 12743. 8 E 8.25 8.01E- 01 1.5
LYM 17 5 12654. 4 M 0.20 3 3.08E01 19.7 LYM 10 2 12222. 2 E 8.18 8 8.26E01 0.8
LYM23 6 12592. 4 M 0.20 3 3.19E- 01 19.7 LYM27 0 12873. 6 E 8.18 8 8.26E01 0.8
LYM 12 9 12573. 3 M 0.2 3.27E01 18 LYM28 8 12743. 5 E 8.31 3 8.56E01 2.3
253
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM6 11736. 1 M 0.19 7 3.63E01 16.4 LYM14 3 12524. 5 E 8.25 8.96E01 1.5
LYM99 12243. 2 M 0.19 5 3.88E01 15.1 LYM28 8 12744. 6 E 8.18 8 9.43E01 0.8
LYM15 9 13354. 6 M 0.19 5 4.08E01 14.8 CONTR OL E 8.12 5 0
LYM14 7 12584. 4 M 0.19 3 4.09E01 14 LYM13 8 12561. 3 F 0.52 2.90E05 66
LYM17 8 12161. 2 M 0.19 4 4.10E01 14.6 LYM28 9 12493. 1 F 0.53 4.10E05 69.3
LYM90 12393. 1 M 0.19 5 4.11E01 15 LYM15 3 12323. 2 F 0.48 6 1.01E- 04 55.1
LYM88 12194. 2 M 0.19 3 4.20E01 13.9 LYM25 5 13082. 8 F 0.46 5 2.39E04 48.5
LYM25 0 12611. 3 M 0.19 3 4.65E01 13.9 LYM11 9 12463. 2 F 0.46 8 2.41E04 49.5
LYM12 8 12642. 3 M 0.19 4.85E01 12.3 LYM13 7 12151. 1 F 0.46 2.99E04 46.9
LYM28 3 13304. 4 M 0.19 2 4.90E01 12.9 LYM10 7 12631. 4 F 0.45 8 3.34E04 46.1
LYM73 12623. 2 M 0.19 4.95E01 12 LYM15 3 12324. 2 F 0.45 5 3.98E04 45.1
LYM89 12214. 3 M 0.19 4.97E01 12.2 LYM13 7 12151. 4 F 0.48 3 5.10E- 04 54.3
LYM25 0 12614. 1 M 0.18 9 4.99E01 11.7 LYM10 5 12293. 1 F 0.44 8 5.60E04 42.9
LYM86 12182. 3 M 0.18 9 5.15E- 01 11.2 LYM11 9 12462. 1 F 0.47 4 1.01E- 03 51.2
LYM73 12623. 1 M 0.18 7 5.48E01 10.4 LYM10 2 12222. 3 F 0.43 2 1.14E- 03 38
LYM25 0 12614. 2 M 0.18 7 5.67E01 10.4 LYM10 5 12297. 2 F 0.42 9 1.36E- 03 37
LYM17 8 12164. 3 M 0.18 6 5.69E01 9.7 LYM10 2 12221. 1 F 0.42 4 1.85E- 03 35.5
LYM23 6 12594. 3 M 0.18 6 5.78E01 9.8 LYM28 8 12743. 9 F 0.43 4 1.86E- 03 38.6
LYM91 13284. 3 M 0.18 7 5.80E01 10 LYM13 8 12562. 2 F 0.40 7 4.58E03 29.8
LYM91 13283. 4 M 0.18 7 5.98E01 10.1 LYM15 3 12321. 2 F 0.4 6.82E03 27.8
LYM12 8 12641. 3 M 0.18 4 6.31E- 01 8.2 LYM10 2 12222. 2 F 0.42 1 7.13E- 03 34.3
LYM6 11733. 2 M 0.18 2 6.76E01 7.5 LYM10 7 12631. 1 F 0.39 8 9.15E03 27.1
LYM25 0 12613. 2 M 0.18 2 6.80E01 7.1 LYM11 9 12461. 1 F 0.45 4 9.42E03 44.9
LYM17 5 12651. 2 M 0.18 1 6.92E01 7 LYM17 4 12412. 1 F 0.52 1.39E02 66
LYM17 5 12654. 6 M 0.18 1 7.00E01 7 LYM13 0 12332. 2 F 0.40 1 1.60E02 27.9
LYM15 7 13342. 4 M 0.18 2 7.13E- 01 7.1 LYM10 0 12133. 3 F 0.38 2 2.01E02 21.9
254
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 12 8 12641. 1 M 0.18 1 7.21E01 6.5 LYM 13 7 12153. 1 F 0.39 7 2.03E02 26.8
LYM86 12183. 1 M 0.17 9 7.55E01 5.5 LYM 17 3 12982. 6 F 0.39 8 2.07E02 26.9
LYM 15 7 13341. 4 M 0.17 9 7.57E01 5.5 LYM 10 2 12222. 6 F 0.38 1 2.15E02 21.6
LYM 15 9 13354. 5 M 0.17 8 7.87E01 4.8 LYM28 8 12743. 5 F 0.48 3 2.36E02 54.1
LYM 14 7 12583. 1 M 0.17 9 7.91E01 5.4 LYM24 2 13051. 8 F 0.38 9 2.77E02 24.2
LYM90 12392. 1 M 0.17 6 8.29E01 3.6 LYM 17 4 12414. 2 F 0.37 4 3.39E02 19.4
LYM6 11734. 3 M 0.17 6 8.39E01 3.5 LYM 14 3 12521. 1 F 0.39 5 3.46E02 26
LYM73 12622. 2 M 0.17 5 8.64E01 3.3 LYM28 7 12771. 6 F 0.37 4 3.57E02 19.3
LYM20 6 12603. 2 M 0.17 9.89E01 0.2 LYM 10 5 12295. 2 F 0.40 9 3.81E02 30.5
CONTR OL M 0.17 0 LYM 19 8 13005. 8 F 0.39 2 4.29E02 25.3
LYM20 6 12603. 3 N 0.24 9 2.57E02 31.4 LYM 10 6 12142. 3 F 0.36 9 4.67E02 17.7
LYM25 0 12613. 4 N 0.24 5.39E02 27 LYM21 2 13031. 6 F 0.40 3 5.15E02 28.7
LYM 10 7 12633. 4 N 0.23 9 8.02E02 26.2 LYM 13 0 12334. 1 F 0.40 1 5.54E02 28.1
LYM88 12191. 2 N 0.23 1 1.01E01 22.1 LYM 13 0 12332. 1 F 0.48 1 5.69E02 53.6
LYM6 11735. 1 N 0.23 1.18E01 21.4 LYM28 9 12493. 2 F 0.41 1 5.77E02 31.1
LYM20 6 12601. 2 N 0.23 6 1.28E01 24.9 LYM 10 7 12632. 1 F 0.38 8 6.16E02 23.7
LYM23 6 12592. 3 N 0.22 5 1.46E01 19.1 LYM44 11882. 1 F 0.36 5 6.29E02 16.4
LYM23 6 12592. 4 N 0.22 8 1.67E01 20.7 LYM 19 7 12821. 6 F 0.43 2 7.71E02 37.7
LYM 12 9 12573. 5 N 0.22 2 2.12E01 17.1 LYM 13 8 12561. 1 F 0.55 7 7.77E02 77.9
LYM99 12243. 1 N 0.22 1 2.18E01 16.8 LYM20 1 12834. 6 F 0.39 7.85E02 24.4
LYM25 0 12611. 3 N 0.22 2 2.41E01 17.3 LYM 17 3 12981. 8 F 0.37 5 8.92E02 19.8
LYM 15 9 13354. 5 N 0.21 8 2.47E01 15.2 LYM 11 1 12254. 4 F 0.37 5 9.07E02 19.8
LYM 15 7 13341. 4 N 0.21 6 2.84E01 14.2 LYM 17 4 12411. 2 F 0.4 9.19E02 27.8
LYM91 13284. 3 N 0.21 8 2.91E01 15.2 LYM 17 4 12414. 3 F 0.48 3 9.49E02 54.1
LYM89 12211. 4 N 0.21 1 3.54E01 11.7 LYM 10 0 12131. 3 F 0.45 9 9.57E02 46.4
LYM 12 9 12572. 4 N 0.21 1 3.67E01 11.3 LYM24 2 13052. 5 F 0.35 7 9.97E02 14
255
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 9 13354. 6 N 0.21 3.95E01 11 LYM 10 7 12632. 3 F 0.49 1 1.05E01 56.9
LYM90 12395. 3 N 0.20 9 4.04E01 10.4 LYM 11 1 12251. 4 F 0.35 6 1.07E01 13.6
LYM 17 8 12161. 2 N 0.21 4.14E01 10.9 LYM 11 1 12252. 2 F 0.48 3 1.09E01 54.1
LYM73 12623. 2 N 0.20 9 4.32E01 10.2 LYM 10 6 12141. 4 F 0.41 6 1.12E01 32.8
LYM23 6 12591. 1 N 0.21 1 4.35E01 11.3 LYM 17 3 12981. 6 F 0.38 7 1.14E01 23.6
LYM20 6 12603. 1 N 0.20 9 4.38E01 10.3 LYM 10 5 12294. 3 F 0.35 6 1.20E01 13.5
LYM 17 8 12163. 4 N 0.20 8 4.45E01 9.8 LYM 11 9 12461. 4 F 0.53 9 1.23E01 71.9
LYM6 11736. 1 N 0.20 8 4.50E01 9.8 LYM 15 2 12373. 1 F 0.39 8 1.26E01 27.1
LYM99 12243. 2 N 0.20 7 4.52E01 9.6 LYM25 5 13082. 9 F 0.41 3 1.28E01 31.9
LYM89 12214. 2 N 0.20 8 4.71E01 10.1 LYM 10 7 12633. 4 F 0.36 4 1.38E01 16.1
LYM23 6 12594. 3 N 0.20 6 5.03E01 8.7 LYM28 7 12774. 6 F 0.37 2 1.44E01 18.9
LYM88 12193. 1 N 0.20 6 5.05E01 8.7 LYM25 5 13082. 7 F 0.52 4 1.53E01 67.3
LYM 17 8 12163. 3 N 0.20 6 5.07E01 8.9 LYM28 9 12491. 4 F 0.37 2 1.56E01 18.7
LYM 17 5 12654. 4 N 0.20 6 5.32E01 9 LYM24 2 13054. 9 F 0.35 1.59E01 11.6
LYM 17 5 12651. 2 N 0.20 5 5.44E01 8.2 LYM 15 3 12322. 1 F 0.43 7 1.73E01 39.4
LYM73 12622. 2 N 0.20 7 5.48E01 9.2 LYM 10 6 12144. 4 F 0.41 9 1.77E01 33.6
LYM90 12392. 1 N 0.20 3 5.60E01 7.2 LYM 10 6 12144. 3 F 0.41 7 1.79E01 33.2
LYM 12 9 12573. 3 N 0.20 4 5.70E01 7.8 LYM 10 5 12294. 2 F 0.39 4 1.86E01 25.9
LYM25 0 12614. 2 N 0.20 3 5.87E01 7.2 LYM 14 3 12524. 2 F 0.36 3 2.01E01 15.8
LYM 14 7 12583. 3 N 0.20 2 5.92E01 6.9 LYM 11 9 12462. 2 F 0.49 7 2.05E01 58.5
LYM91 13283. 4 N 0.20 4 5.95E01 7.7 LYM 15 2 12371. 2 F 0.44 8 2.08E01 42.9
LYM90 12395. 1 N 0.20 2 6.07E01 6.6 LYM 15 3 12324. 1 F 0.49 6 2.14E01 58.4
LYM6 11733. 2 N 0.20 1 6.29E01 6.3 LYM 13 7 12151. 2 F 0.42 9 2.24E01 36.8
LYM25 0 12613. 2 N 0.20 1 6.31E01 6.1 LYM20 1 12833. 9 F 0.35 6 2.26E01 13.5
LYM 15 9 13352. 4 N 0.20 1 6.42E01 6.1 LYM 13 7 12154. 5 F 0.45 9 2.29E01 46.6
LYM 15 7 13342. 4 N 0.20 2 6.50E01 6.9 LYM27 0 12872. 7 F 0.34 2 2.46E01 9.3
256
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM6 11734. 3 N 0.2 6.63E01 5.5 LYM 17 4 12411. 3 F 0.48 4 2.50E01 54.5
LYM 17 5 12651. 4 N 0.19 8 7.57E01 4.9 LYM24 2 13053. 7 F 0.35 1 2.53E01 12
LYM 10 7 12631. 4 N 0.19 6 7.70E01 3.7 LYM27 0 12873. 6 F 0.44 2.56E01 40.5
LYM89 12214. 3 N 0.19 3 8.96E01 1.7 LYM 13 8 12564. 1 F 0.45 5 2.60E01 45.3
LYM28 3 13304. 4 N 0.19 2 9.03E01 1.7 LYM27 0 12872. 5 F 0.34 1 2.66E01 8.9
LYM88 12194. 2 N 0.19 1 9.26E01 1.2 LYM 11 1 12251. 3 F 0.35 5 2.73E01 13.4
LYM90 12393. 1 N 0.19 2 9.27E01 1.2 LYM 10 2 12222. 1 F 0.38 8 2.84E01 23.7
LYM73 12623. 1 N 0.19 1 9.45E01 0.9 LYM25 5 13082. 5 F 0.46 6 2.88E01 48.6
LYM 17 5 12654. 6 N 0.19 1 9.48E01 0.9 LYM 10 0 12134. 1 F 0.34 9 3.08E01 11.4
LYM25 6 13323. 3 N 0.19 9.77E01 0.4 LYM 14 3 12524. 7 F 0.43 8 3.10E- 01 39.9
LYM 12 8 12641. 1 N 0.19 9.78E01 0.4 LYM 15 2 12371. 3 F 0.36 5 3.10E- 01 16.5
CONTR OL N 0.18 9 0 LYM29 1 12753. 6 F 0.33 8 3.10E- 01 8
LYM 10 7 12631. 4 O 1.77 3.57E03 32.1 LYM 18 3 12994. 8 F 0.42 2 3.14E- 01 34.8
LYM 17 8 12163. 4 O 1.70 8 5.93E03 27.5 LYM44 11885. 4 F 0.33 9 3.19E- 01 8.1
LYM 14 7 12583. 3 o 1.69 2 7.49E03 26.3 LYM22 0 12851. 8 F 0.46 8 3.32E01 49.4
LYM23 6 12592. 3 o 1.68 6 7.99E03 25.9 LYM 14 2 12804. 1 F 0.40 8 3.37E01 30.4
LYM90 12395. 1 o 1.72 3 2.51E02 28.6 LYM28 8 12741. 9 F 0.44 2 3.47E01 41
LYM 12 9 12572. 4 o 1.60 8 3.01E- 02 20.1 LYM 10 7 12631. 2 F 0.37 7 3.60E01 20.3
LYM 14 7 12584. 4 o 1.57 9 4.98E02 17.9 LYM 13 0 12331. 3 F 0.43 8 3.65E01 39.9
LYM20 6 12603. 1 o 1.67 6 5.34E02 25.1 LYM 19 7 12821. 11 F 0.35 1 3.71E- 01 12.1
LYM88 12194. 2 o 1.56 4 5.43E02 16.8 LYM 18 3 12994. 7 F 0.38 8 3.71E- 01 23.9
LYM6 11736. 1 o 1.54 9 6.34E02 15.6 LYM90 12395. 3 F 0.43 3 3.94E01 38.2
LYM89 12211. 4 o 1.59 6 8.59E02 19.2 LYM25 5 13081. 5 F 0.38 3.98E01 21.4
LYM90 12395. 3 o 1.78 9 8.97E02 33.6 LYM28 7 12771. 7 F 0.34 9 4.04E01 11.3
LYM86 12182. 3 o 1.51 5 1.09E- 01 13.1 LYM28 8 12744. 6 F 0.39 9 4.10E01 27.3
LYM73 12623. 2 o 1.52 5 1.09E- 01 13.9 LYM 14 3 12524. 5 F 0.39 5 4.19E01 26
257
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM20 6 12603. 3 O 2.23 4 1.15E01 66.8 LYM28 9 12491. 1 F 0.33 3 4.32E01 6.2
LYM 12 8 12641. 3 o 1.53 1 1.26E01 14.3 LYM 17 3 12981. 5 F 0.39 8 4.35E01 27.1
LYM99 12243. 2 o 1.55 1 1.32E01 15.8 LYM 10 6 12142. 2 F 0.41 3 4.38E01 31.7
LYM88 12193. 1 o 1.84 7 1.84E01 37.9 LYM 13 7 12152. 1 F 0.39 1 4.50E01 24.8
LYM 15 9 13354. 6 o 1.52 4 1.99E01 13.8 LYM 14 3 12521. 2 F 0.34 6 4.92E01 10.4
LYM23 6 12594. 3 o 1.48 6 2.04E01 10.9 LYM 19 8 13004. 6 F 0.33 9 5.17E01 8.1
LYM25 0 12613. 4 o 2.00 9 2.25E01 49.9 LYM27 0 12871. 8 F 0.36 5.27E01 15
LYM 17 8 12164. 3 o 1.50 4 2.35E01 12.3 LYM 15 2 12372. 2 F 0.36 4 5.34E01 16.1
LYM88 12191. 2 o 1.70 1 2.49E01 27 LYM20 8 13012. 5 F 0.39 9 5.44E01 27.4
LYM99 12243. 1 o 1.84 6 2.59E01 37.8 LYM20 8 13013. 6 F 0.35 3 5.52E01 12.6
LYM25 0 12614. 1 o 1.51 2 2.61E01 12.9 LYM 13 0 12333. 1 F 0.37 2 5.61E01 18.7
LYM73 12623. 1 o 1.5 2.71E01 12 LYM 14 2 12801. 8 F 0.32 7 5.89E01 4.3
LYM25 0 12613. 2 o 1.45 4 2.72E01 8.5 LYM29 1 12751. 2 F 0.33 6 5.96E01 7.2
LYM 10 7 12633. 4 o 1.93 2.97E01 44.1 LYM24 2 13051. 9 F 0.36 1 5.96E01 15.1
LYM 17 8 12163. 3 o 1.69 9 3.27E01 26.8 LYM21 2 13032. 8 F 0.33 8 6.12E01 7.9
LYM6 11735. 1 o 1.87 5 3.35E01 40 LYM28 9 12492. 2 F 0.33 2 6.33E01 5.8
LYM 17 8 12161. 2 o 1.57 1 3.67E01 17.3 LYM27 0 12871. 5 F 0.36 8 6.53E01 17.3
LYM20 6 12601. 2 o 2.12 9 3.80E01 58.9 LYM 18 3 12993. 7 F 0.35 7 6.81E01 13.9
LYM 12 8 12642. 3 o 1.56 3 3.92E01 16.7 LYM 10 0 12133. 1 F 0.34 3 6.89E01 9.6
LYM 12 9 12573. 5 o 1.71 1 3.99E01 27.8 LYM 11 1 12251. 1 F 0.33 6.90E01 5.5
LYM 12 9 12573. 3 o 1.61 6 4.06E01 20.7 LYM28 8 12743. 8 F 0.36 3 7.05E01 15.8
LYM89 12214. 2 o 1.69 4 4.34E01 26.5 LYM61 13174. 7 F 0.33 6 7.42E01 7.2
LYM23 6 12591. 1 o 1.64 6 4.95E01 22.9 LYM29 1 12754. 9 F 0.35 7.44E01 11.8
LYM6 11734. 3 o 1.43 3 5.31E01 7 LYM 13 8 12566. 1 F 0.35 2 7.57E01 12.5
LYM90 12393. 1 o 1.57 5 5.32E01 17.6 LYM 19 7 12824. 7 F 0.33 2 7.58E01 5.8
LYM 17 5 12651. 2 o 1.40 8 5.50E01 5.1 LYM21 2 13034. 9 F 0.33 8 7.64E01 7.9
258
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 5 12654. 4 O 1.59 6 5.60E01 19.1 LYM28 7 12773. 7 F 0.33 7 7.64E01 7.6
LYM89 12214. 3 o 1.52 3 5.70E01 13.7 LYM 19 8 13002. 6 F 0.32 8 7.83E01 4.8
LYM90 12392. 1 o 1.39 6 5.76E01 4.2 LYM 19 8 13002. 5 F 0.33 7 8.11E01 7.5
LYM25 0 12614. 2 o 1.48 6 5.89E01 11 LYM 10 2 12221. 2 F 0.32 8.28E01 2.3
LYM91 13284. 3 o 1.47 6.23E01 9.8 LYM20 1 12831. 5 F 0.32 6 8.38E01 4.1
LYM28 3 13304. 4 o 1.54 1 6.30E01 15.1 LYM 18 3 12993. 5 F 0.32 8.80E01 2.1
LYM 15 7 13341. 4 o 1.39 1 6.32E01 3.9 LYM 14 2 12802. 9 F 0.31 9 8.84E01 1.9
LYM23 6 12592. 4 o 1.56 5 6.43E01 16.8 LYM 14 2 12804. 3 F 0.33 2 8.91E01 5.8
LYM86 12183. 1 o 1.44 6 6.73E01 8 LYM20 1 12833. 7 F 0.32 9.02E01 2.3
LYM25 0 12611. 3 o 1.51 2 6.74E01 12.9 LYM 10 5 12297. 1 F 0.32 2 9.11E01 2.7
LYM6 11733. 2 o 1.41 4 7.15E01 5.5 LYM20 8 13011. 6 F 0.32 5 9.20E01 3.8
LYM91 13283. 4 o 1.47 5 7.75E01 10.1 LYM 19 8 13005. 6 F 0.31 6 9.23E01 0.9
LYM 17 5 12654. 6 o 1.40 5 7.80E01 4.9 LYM 19 7 12822. 7 F 0.31 6 9.30E01 0.7
LYM 12 8 12641. 1 o 1.42 6 7.91E01 6.5 LYM 17 3 12982. 7 F 0.32 9.33E01 2.1
LYM 15 9 13354. 5 o 1.36 5 8.31E01 1.9 LYM27 0 12871. 7 F 0.31 5 9.39E01 0.6
LYM 15 7 13342. 4 o 1.43 1 8.44E01 6.8 LYM20 8 13012. 8 F 0.31 7 9.44E01 1.2
LYM 14 7 12583. 1 o 1.44 3 8.70E01 7.7 LYM 14 3 12523. 4 F 0.31 7 9.74E01 1.3
LYM20 6 12603. 2 o 1.34 7 9.41E01 0.5 LYM90 12392. 1 F 0.31 5 9.85E01 0.4
LYM 17 8 12164. 2 o 1.35 5 9.61E01 1.1 LYM29 1 12751. 7 F 0.31 3 9.97E01 0
LYM 14 7 12584. 5 o 1.34 2 9.84E01 0.2 CONTR OL F 0.31 3 0
LYM73 12622. 2 o 1.34 5 9.91E01 0.4 LYM 13 7 12154. 5 G 9.65 2 2.50E03 28.4
LYM 14 9 12344. 2 o 1.34 6 9.92E01 0.5 LYM 10 0 12131. 3 G 9.79 3 2.50E03 30.3
CONTR OL o 1.33 9 0 LYM 13 8 12566. 1 G 9.6 3.03E03 27.8
LYM 17 8 12163. 4 P 2.40 5 5.91E03 17 LYM 19 7 12821. 6 G 9.48 7 4.52E03 26.3
LYM23 6 12592. 3 P 2.37 1 7.03E03 15.4 LYM28 8 12744. 6 G 10.0 91 4.70E03 34.3
LYM90 12395. 3 P 2.35 6 1.03E02 14.6 LYM 15 3 12324. 2 G 9.39 9 5.04E03 25.1
259
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM88 12193. 1 P 2.44 5 2.73E02 19 LYM 17 4 12412. 1 G 9.89 8 6.17E- 03 31.7
LYM89 12211. 4 P 2.28 6 3.08E02 11.2 LYM28 8 12743. 9 G 9.30 9 6.49E03 23.9
LYM 14 7 12583. 3 P 2.32 1 3.39E02 12.9 LYM 14 3 12524. 7 G 9.94 8 7.18E- 03 32.4
LYM20 6 12603. 3 P 2.67 3.75E02 29.9 LYM 17 4 12411. 3 G 8.93 8 1.97E02 18.9
LYM20 6 12603. 1 P 2.36 5 4.22E02 15 LYM 14 3 12524. 5 G 9.43 6 2.22E02 25.6
LYM 15 9 13354. 6 P 2.24 4 6.96E02 9.2 LYM 13 8 12561. 1 G 8.80 3 2.93E02 17.1
LYM73 12623. 2 P 2.22 8 8.37E02 8.4 LYM 17 4 12414. 3 G 9.91 8 3.00E02 32
LYM99 12243. 2 P 2.21 7 9.87E02 7.8 LYM 10 2 12222. 3 G 8.78 6 3.08E02 16.9
LYM90 12395. 1 P 2.34 8 1.12E- 01 14.2 LYM24 2 13052. 5 G 8.76 3 3.35E02 16.6
LYM6 11735. 1 P 2.45 9 1.30E- 01 19.6 LYM 10 5 12295. 2 G 8.76 3.42E02 16.6
LYM 14 7 12584. 4 P 2.19 7 1.35E- 01 6.9 LYM25 5 13082. 9 G 9.04 4 3.44E02 20.4
LYM88 12194. 2 P 2.19 4 1.52E- 01 6.8 LYM28 9 12491. 4 G 8.79 6 3.65E02 17.1
LYM 10 7 12631. 4 P 2.30 2 1.87E- 01 12 LYM 10 2 12221. 2 G 9.39 5 3.66E02 25
LYM6 11734. 3 P 2.25 5 1.95E- 01 9.7 LYM 10 0 12131. 2 G 8.71 3 3.84E02 15.9
LYM6 11736. 1 P 2.17 5 1.97E01 5.8 LYM 15 3 12321. 2 G 9.90 2 4.76E02 31.8
LYM73 12623. 1 P 2.20 1 2.31E01 7.1 LYM 13 7 12151. 4 G 8.63 7 4.92E02 14.9
LYM23 6 12594. 3 P 2.18 1 2.39E01 6.1 LYM90 12395. 1 G 8.67 2 4.94E02 15.4
LYM25 0 12613. 4 P 2.57 3 2.42E01 25.2 LYM 13 7 12152. 1 G 9.49 5.11E- 02 26.3
LYM 17 8 12161. 2 P 2.33 7 2.59E01 13.7 LYM 10 7 12631. 1 G 9.23 4 5.21E- 02 22.9
LYM 10 7 12633. 4 P 2.57 1 2.61E01 25.1 LYM28 9 12493. 1 G 11.0 18 5.29E02 46.6
LYM 17 8 12163. 3 P 2.33 5 2.65E01 13.6 LYM 18 3 12994. 7 G 8.60 9 5.68E02 14.6
LYM 12 9 12572. 4 P 2.18 2.78E01 6.1 LYM 15 3 12323. 2 G 8.69 3 6.46E02 15.7
LYM25 0 12613. 2 P 2.18 6 2.87E01 6.3 LYM 10 6 12142. 1 G 8.73 7 6.51E- 02 16.3
LYM86 12182. 3 P 2.14 9 3.06E01 4.5 LYM44 11885. 3 G 8.74 7.16E- 02 16.3
LYM88 12191. 2 P 2.36 2 3.07E01 14.9 LYM27 0 12872. 5 G 8.54 2 7.30E02 13.7
LYM25 0 12614. 1 P 2.15 6 3.08E01 4.9 LYM 17 4 12414. 2 G 9.38 7.53E02 24.8
260
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM12 9 12573. 5 P 2.34 3.12E- 01 13.8 LYM61 13174. 7 G 8.67 5 7.55E02 15.4
LYM12 9 12573. 3 P 2.27 9 3.13E- 01 10.9 LYM10 6 12142. 3 G 8.48 1 7.93E02 12.9
LYM99 12243. 1 P 2.45 2 3.36E01 19.3 LYM10 2 12221. 1 G 8.52 3 8.03E02 13.4
LYM17 8 12164. 3 P 2.14 6 3.40E01 4.4 LYM10 0 12134. 1 G 8.54 7 8.05E02 13.7
LYM12 8 12641. 3 P 2.14 9 3.45E01 4.6 LYM28 8 12741. 9 G 8.47 2 8.26E02 12.7
LYM20 6 12601. 2 P 2.58 8 3.87E01 25.9 LYM28 9 12491. 1 G 8.52 2 8.40E02 13.4
LYM15 7 13341. 4 P 2.14 3 4.06E01 4.2 LYM17 3 12981. 8 G 8.64 9 8.84E02 15.1
LYM25 0 12614. 2 P 2.21 6 4.21E01 7.8 LYM10 7 12632. 3 G 8.46 9 9.28E02 12.7
LYM90 12392. 1 P 2.12 1 4.64E01 3.2 LYM13 8 12561. 3 G 9.89 9.40E02 31.6
LYM89 12214. 2 P 2.29 6 4.65E01 11.7 LYM28 7 12771. 7 G 8.57 3 9.43E02 14.1
LYM15 9 13354. 5 P 2.14 3 4.69E01 4.2 LYM11 9 12461. 4 G 10.0 68 9.61E02 34
LYM23 6 12591. 1 P 2.30 5 5.02E01 12.1 LYM18 3 12994. 8 G 8.64 1 9.88E02 15
LYM90 12393. 1 P 2.20 2 5.67E01 7.1 LYM11 1 12252. 2 G 9.76 7 1.10E01 30
LYM23 6 12592. 4 P 2.26 6 5.72E01 10.2 LYM17 3 12982. 7 G 8.45 6 1.10E01 12.5
LYM17 5 12654. 4 P 2.24 7 5.93E01 9.3 LYM29 1 12753. 6 G 8.43 1.13E01 12.2
LYM25 0 12611. 3 P 2.25 2 6.16E- 01 9.6 LYM10 5 12293. 1 G 8.74 9 1.13E01 16.4
LYM89 12214. 3 P 2.19 2 6.24E01 6.6 LYM13 0 12331. 3 G 9.17 1 1.24E01 22
LYM91 13284. 3 P 2.21 6 6.26E01 7.8 LYM22 0 12852. 4 G 8.54 1.27E- 01 13.6
LYM28 3 13304. 4 P 2.18 4 6.55E01 6.3 LYM90 12393. 1 G 8.36 8 1.28E01 11.4
LYM12 8 12642. 3 P 2.14 3 6.86E01 4.3 LYM44 11884. 1 G 8.32 4 1.29E- 01 10.8
LYM17 5 12651. 2 P 2.09 1 6.92E01 1.7 LYM20 8 13014. 7 G 8.33 6 1.38E01 10.9
LYM91 13283. 4 P 2.17 7 7.80E01 5.9 LYM15 2 12371. 2 G 8.31 6 1.41E01 10.7
LYM15 7 13342. 4 P 2.12 9 8.55E01 3.6 LYM27 0 12871. 8 G 9.58 7 1.48E01 27.6
LYM86 12183. 1 P 2.08 6 8.93E01 1.5 LYM10 6 12144. 3 G 8.49 2 1.51E01 13
LYM12 8 12641. 1 P 2.08 1 9.09E01 1.3 LYM10 0 12133. 1 G 9.10 5 1.51E01 21.2
LYM6 11733. 2 P 2.08 9.12E01 1.2 LYM29 1 12751. 7 G 8.33 2 1.55E01 10.9
261
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM15 9 13352. 4 P 2.07 9.20E01 0.7 LYM90 12395. 3 G 8.26 1 1.57E01 9.9
LYM73 12622. 2 P 2.08 5 9.45E01 1.4 LYM61 13171. 7 G 9.39 6 1.58E01 25
LYM14 7 12583. 1 P 2.09 5 9.49E01 1.9 LYM44 11884. 3 G 8.44 2 1.59E01 12.3
CONTR OL P 2.05 6 0 LYM28 8 12743. 5 G 11.0 95 1.61E01 47.6
LYM16 5 12973. 8 A 91.4 61 5.84E02 2.5 LYM17 4 12411. 2 G 8.32 4 1.65E01 10.8
LYM14 2 12803. 6 A 91.2 85 7.62E02 2.3 LYM28 7 12774. 6 G 8.76 8 1.68E01 16.7
LYM24 2 13052. 5 A 91.1 79 8.25E02 2.1 LYM25 5 13082. 7 G 9.39 8 1.69E01 25.1
LYM14 2 12804. 4 A 91.5 2 1.16E01 2.5 LYM14 3 12521. 1 G 9.11 9 1.76E01 21.4
LYM22 0 12851. 7 A 92.0 43 1.54E01 3.1 LYM90 12392. 1 G 8.32 1.76E01 10.7
LYM14 2 12802. 9 A 90.7 34 1.57E01 1.6 LYM25 5 13082. 8 G 10.9 7 1.80E01 46
LYM22 0 12851. 13 A 90.6 71 1.90E01 1.6 LYM21 2 13034. 8 G 9.01 6 1.83E01 20
LYM27 0 12874. 7 A 90.1 87 3.71E01 1 LYM10 2 12222. 2 G 8.42 2 1.87E01 12.1
LYM21 2 13032. 8 A 90.2 58 4.05E01 1.1 LYM24 2 13054. 9 G 9.01 3 1.90E01 19.9
LYM16 5 12973. 6 A 90.3 5 4.28E01 1.2 LYM10 6 12141. 4 G 8.55 8 2.06E01 13.9
LYM22 3 12674. 2 A 90.2 59 4.31E01 1.1 LYM10 7 12631. 4 G 9.99 3 2.10E01 33
LYM27 0 12872. 5 A 90.3 41 4.99E01 1.2 LYM14 3 12521. 2 G 8.35 7 2.11E01 11.2
LYM22 0 12851. 11 A 90.4 46 5.73E01 1.3 LYM20 8 13013. 9 G 8.78 2 2.14E01 16.9
LYM20 3 12664. 1 A 89.7 91 5.92E01 0.6 LYM13 8 12562. 2 G 8.17 5 2.14E01 8.8
LYM16 5 12972. 6 A 89.9 24 6.77E01 0.7 LYM25 5 13082. 5 G 8.23 7 2.26E01 9.6
LYM14 2 12804. 3 A 89.6 63 6.98E01 0.4 LYM10 7 12633. 4 G 9.10 6 2.32E01 21.2
LYM20 3 12662. 3 A 89.5 92 7.80E01 0.4 LYM14 2 12804. 1 G 10.6 62 2.37E01 41.9
LYM21 2 13031. 5 A 89.7 6 8.24E01 0.6 LYM24 2 13051. 9 G 8.60 4 2.43E01 14.5
LYM16 5 12974. 5 A 89.4 51 8.70E01 0.2 LYM19 7 12822. 5 G 9.43 5 2.48E01 25.6
LYM14 2 12801. 8 A 89.8 33 9.02E01 0.6 LYM44 11882. 1 G 9.75 8 2.48E01 29.9
LYM22 0 12852. 4 A 89.4 91 9.29E01 0.2 LYM27 0 12871. 5 G 8.25 5 2.54E01 9.9
LYM20 7 13252. 2 A 89.4 64 9.67E01 0.2 LYM10 0 12133. 3 G 8.86 4 2.58E01 18
262
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 2 13034. 9 A 89.3 17 9.73E01 0.1 LYM15 3 12324. 1 G 9.76 5 2.62E01 29.9
CONTR OL A 89.2 68 0 LYM10 5 12297. 2 G 8.08 1 2.72E01 7.5
LYM20 3 12662. 3 B 0.35 7 2.54E03 16.5 LYM10 2 12222. 1 G 8.19 2.75E01 9
LYM14 2 12804. 4 B 0.34 6 2.59E02 13.1 LYM11 9 12463. 2 G 8.45 5 2.83E01 12.5
LYM27 0 12872. 8 B 0.32 1.49E01 4.5 LYM13 0 12333. 1 G 8.85 1 2.85E01 17.8
LYM20 7 13251. 5 B 0.32 2.19E01 4.5 LYM15 2 12372. 2 G 9.44 6 2.96E01 25.7
LYM24 2 13051. 8 B 0.32 3 2.70E01 5.5 LYM19 8 13002. 5 G 8.89 7 2.97E01 18.4
LYM21 2 13032. 8 B 0.32 8 3.94E01 6.9 LYM15 2 12373. 1 G 10.5 3 3.04E01 40.1
LYM16 5 12973. 5 B 0.31 1 5.21E01 1.6 LYM13 0 12332. 2 G 8.94 9 3.07E01 19.1
LYM16 5 12974. 5 B 0.34 3 5.67E01 11.8 LYM20 8 13013. 6 G 8.78 3.08E01 16.8
LYM22 0 12851. 11 B 0.32 4 5.74E01 5.9 LYM19 7 12824. 7 G 8.20 9 3.20E01 9.2
LYM16 5 12973. 6 B 0.33 9 5.91E01 10.8 LYM13 0 12334. 1 G 8.52 4 3.27E01 13.4
LYM21 2 13034. 9 B 0.32 2 6.03E01 5.1 LYM15 3 12322. 1 G 10.0 78 3.33E01 34.1
LYM16 5 12972. 6 B 0.31 6.28E01 1.2 LYM11 9 12462. 1 G 11.3 22 3.43E01 50.7
LYM22 3 12674. 5 B 0.31 1 6.63E01 1.6 LYM21 2 13031. 6 G 8.34 4 3.43E01 11
LYM24 2 13054. 9 B 0.32 1 6.88E01 4.7 LYM15 2 12371. 3 G 8.83 5 3.43E01 17.6
LYM22 3 12674. 2 B 0.31 8 7.66E01 3.9 LYM25 5 13081. 5 G 8.36 9 3.44E01 11.4
LYM21 2 13034. 8 B 0.31 4 8.88E01 2.6 LYM13 8 12564. 1 G 9.04 3 3.61E01 20.3
LYM14 2 12804. 3 B 0.30 8 9.13E01 0.4 LYM11 9 12462. 2 G 8.79 1 3.63E01 17
LYM27 0 12872. 7 B 0.30 8 9.59E01 0.4 LYM28 8 12743. 8 G 7.99 1 3.87E01 6.3
CONTR OL B 0.30 6 0 LYM20 8 13011. 6 G 9.20 7 3.94E01 22.5
LYM27 0 12872. 8 C 3.21 4 1.73E02 9 LYM18 3 12993. 8 G 8.73 2 4.00E01 16.2
LYM24 2 13051. 8 C 3.05 6 2.19E01 3.6 LYM22 0 12851. 13 G 7.96 2 4.01E01 6
LYM20 3 12662. 3 C 3.39 4 2.48E01 15.1 LYM22 0 12852. 2 G 8.43 1 4.14E01 12.2
LYM16 5 12973. 6 C 3.36 3 2.58E01 14 LYM11 1 12251. 4 G 7.93 8 4.15E01 5.6
LYM22 0 12851. 11 C 3.08 8 3.21E01 4.7 LYM20 1 12833. 9 G 8.43 6 4.26E01 12.3
263
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM27 0 12872. 7 C 3.02 5 4.73E01 2.6 LYM11 9 12461. 1 G 8.18 8 4.34E01 9
LYM20 7 13251. 5 c 3.08 1 4.87E01 4.5 LYM14 3 12524. 2 G 8.46 4 4.56E01 12.6
LYM14 2 12804. 3 c 3.00 6 4.98E01 1.9 LYM29 1 12754. 9 G 8.19 3 4.61E01 9
LYM16 5 12974. 5 c 3.31 9 5.38E01 12.5 LYM19 8 13005. 8 G 7.98 7 4.62E01 6.3
LYM21 2 13032. 8 c 3.14 4 5.50E01 6.6 LYM13 0 12332. 1 G 9.02 5 4.71E01 20.1
LYM24 2 13054. 9 c 3.07 5 6.60E01 4.3 LYM20 1 12834. 6 G 9.02 8 4.74E01 20.1
LYM14 2 12804. 4 c 3.11 9 6.89E01 5.7 LYM17 3 12981. 5 G 9.30 8 4.78E01 23.9
LYM21 2 13034. 9 c 3.06 9 7.34E01 4 LYM21 2 13034. 9 G 7.93 3 4.85E01 5.6
LYM21 2 13034. 8 c 3.08 1 7.88E01 4.5 LYM10 5 12294. 2 G 8.76 5 4.98E01 16.6
LYM16 5 12974. 6 c 2.98 1 8.42E01 1.1 LYM13 7 12151. 1 G 7.90 6 5.03E01 5.2
LYM22 3 12674. 2 c 2.98 1 8.42E01 1.1 LYM19 7 12821. 11 G 8.25 8 5.15E01 9.9
CONTR OL c 2.94 9 0 LYM20 8 13012. 5 G 8.23 8 5.34E01 9.6
LYM16 5 12973. 8 D 0.32 2.37E03 23 LYM28 9 12493. 2 G 9.26 5 5.36E01 23.3
LYM20 7 13251. 6 D 0.30 5 1.11E02 17.4 LYM13 7 12153. 1 G 8.62 5.42E01 14.7
LYM16 5 12973. 6 D 0.36 3.31E02 38.6 LYM13 7 12151. 2 G 10.0 46 5.51E01 33.7
LYM20 7 13251. 4 D 0.29 5 5.21E02 13.4 LYM14 2 12801. 8 G 8.68 6 5.67E01 15.6
LYM20 3 12664. 1 D 0.29 5 1.18E01 13.7 LYM13 8 12562. 1 G 7.81 9 5.85E01 4.1
LYM14 2 12804. 4 D 0.32 7 1.20E01 25.7 LYM28 8 12744. 7 G 8.89 5 5.96E01 18.4
LYM22 0 12851. 7 D 0.28 9 1.21E01 11.3 LYM18 3 12991. 7 G 8.05 7 6.16E01 7.2
LYM21 2 13034. 9 D 0.32 1 1.28E01 23.6 LYM19 8 13002. 8 G 7.83 1 6.34E01 4.2
LYM20 3 12662. 3 D 0.39 2 1.71E01 50.9 LYM24 2 13053. 7 G 7.80 2 6.36E01 3.8
LYM16 5 12972. 6 D 0.33 7 2.51E01 29.6 LYM19 8 13004. 6 G 8.07 8 6.38E01 7.5
LYM14 2 12802. 9 D 0.28 8 2.59E01 10.9 LYM29 1 12751. 1 G 7.80 8 6.53E01 3.9
LYM22 0 12851. 11 D 0.27 5 2.93E01 5.7 LYM10 7 12631. 2 G 8.18 8 6.54E01 9
LYM16 5 12974. 5 D 0.36 6 3.60E01 40.7 LYM11 1 12251. 3 G 8.43 6.54E01 12.2
LYM14 2 12804. 3 D 0.28 3.67E01 7.9 LYM11 1 12254. 4 G 8.21 6.60E01 9.3
264
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 2 13032. 8 D 0.31 3 3.99E01 20.5 LYM17 3 12982. 6 G 8.19 6 6.75E01 9.1
LYM20 7 13251. 5 D 0.27 1 4.58E01 4.2 LYM90 12394. 2 G 7.74 9 6.78E01 3.1
LYM21 2 13034. 8 D 0.32 6 4.77E01 25.5 LYM28 9 12492. 2 G 7.87 8 6.78E01 4.8
LYM24 2 13051. 8 D 0.31 7 5.01E01 22.2 LYM27 0 12873. 6 G 8.65 6 6.86E01 15.2
LYM24 2 13054. 9 D 0.29 6 5.23E01 14 LYM14 2 12804. 3 G 8.10 5 6.98E01 7.9
LYM14 2 12801. 8 D 0.27 7 5.35E01 6.7 LYM29 1 12751. 2 G 8.02 2 6.99E01 6.7
LYM27 0 12871. 7 D 0.26 6 6.43E01 2.4 LYM10 7 12632. 1 G 8.13 3 7.08E01 8.2
LYM16 5 12973. 5 D 0.28 5 6.48E01 9.5 LYM10 6 12142. 2 G 7.73 6 7.26E01 3
LYM20 3 12664. 2 D 0.27 3 7.59E01 5.1 LYM14 2 12803. 6 G 7.72 3 7.27E01 2.8
LYM14 2 12804. 1 D 0.27 1 8.59E01 4.2 LYM61 13174. 5 G 7.91 6 7.37E01 5.3
LYM27 0 12872. 7 D 0.26 2 8.71E01 0.8 LYM27 0 12872. 7 G 7.67 3 7.48E01 2.1
LYM22 3 12674. 2 D 0.26 1 9.23E01 0.5 LYM22 0 12851. 8 G 8.08 2 7.70E01 7.6
CONTR OL D 0.26 0 LYM15 2 12373. 2 G 7.82 7.80E01 4.1
LYM16 5 12973. 8 E 8.62 5 4.10E04 12 LYM20 1 12831. 5 G 7.64 7.97E01 1.7
LYM21 2 13034. 9 E 8.43 8 1.77E03 9.6 LYM19 8 13005. 6 G 7.68 8 8.21E01 2.3
LYM16 5 12973. 6 E 8.75 4.04E03 13.6 LYM11 1 12254. 3 G 7.70 7 8.31E01 2.6
LYM16 5 12972. 6 E 8.31 3 5.10E03 7.9 LYM19 8 13002. 6 G 7.83 7 8.35E01 4.3
LYM14 2 12803. 6 E 8.18 8 1.61E02 6.3 LYM14 3 12523. 4 G 7.68 5 8.37E01 2.3
LYM20 7 13251. 5 E 8.18 8 1.61E02 6.3 LYM19 7 12824. 4 G 7.75 5 8.48E01 3.2
LYM20 3 12664. 1 E 9 5.72E02 16.9 LYM20 1 12833. 6 G 7.59 4 8.73E01 1.1
LYM22 0 12851. 11 E 8 8.14E02 3.9 LYM20 8 13012. 8 G 7.63 1 9.07E01 1.6
LYM14 2 12804. 4 E 8.31 3 1.00E01 7.9 LYM10 6 12144. 4 G 7.55 3 9.41E01 0.5
LYM21 2 13034. 8 E 8.43 8 2.09E01 9.6 LYM10 2 12222. 6 G 7.56 4 9.61E01 0.7
LYM20 3 12662. 3 E 8.62 5 2.09E01 12 LYM22 0 12851. 11 G 7.52 1 9.92E01 0.1
LYM16 5 12974. 5 E 8.31 3 2.60E01 7.9 CONTR OL G 7.51 4 0
LYM21 2 13032. 8 E 8.31 3 2.60E01 7.9 LYM17 4 12414. 3 H 16.7 48 1.00E06 72.1
265
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM22 0 12851. 7 E 8.25 3.59E01 7.1 LYM28 8 12743. 9 H 13.8 43 3.30E05 42.2
LYM27 0 12871. 7 E 7.93 8 4.08E01 3.1 LYM25 5 13082. 8 H 13.6 98 4.70E05 40.7
LYM14 2 12801. 8 E 8 4.22E01 3.9 LYM10 6 12144. 4 H 12.9 94 2.04E04 33.5
LYM20 7 13251. 6 E 8 4.22E01 3.9 LYM27 0 12873. 6 H 12.6 95 4.90E04 30.4
LYM14 2 12804. 1 E 8.12 5 4.47E01 5.5 LYM28 9 12492. 2 H 12.1 41 1.30E- 03 24.7
LYM22 3 12674. 2 E 7.81 3 5.05E01 1.4 LYM10 5 12294. 2 H 11.9 67 1.87E- 03 22.9
LYM27 0 12872. 5 E 8.12 5 5.48E01 5.5 LYM13 0 12332. 1 H 15.4 26 3.71E- 03 58.5
LYM24 2 13051. 8 E 8.06 3 5.55E01 4.7 LYM15 3 12323. 2 H 14.6 28 4.86E03 50.3
LYM14 2 12802. 9 E 8 5.67E01 3.9 LYM13 0 12334. 1 H 12.6 21 5.52E03 29.7
LYM20 3 12664. 2 E 7.75 8.10E- 01 0.6 LYM13 7 12153. 1 H 11.4 76 7.32E03 17.9
LYM14 2 12804. 3 E 7.81 3 8.76E01 1.4 LYM15 3 12324. 2 H 13.5 15 7.63E03 38.9
LYM24 2 13052. 5 E 7.75 8.83E01 0.6 LYM17 3 12981. 6 H 11.7 01 8.10E- 03 20.2
LYM22 0 12851. 13 E 7.75 9.38E01 0.6 LYM13 8 12561. 1 H 21.8 1 8.93E03 124.1
LYM24 2 13054. 9 E 7.75 9.50E01 0.6 LYM28 9 12493. 1 H 14.5 47 1.07E02 49.5
CONTR OL E 7.70 1 0 LYM11 9 12461. 4 H 16.2 44 1.16E02 66.9
LYM16 5 12973. 6 F 0.59 6 7.95E02 13.5 LYM10 2 12222. 2 H 13.4 08 1.46E02 37.7
LYM14 2 12804. 4 F 0.59 2 1.09E- 01 12.7 LYM10 2 12222. 3 H 11.6 38 1.94E- 02 19.6
LYM16 5 12973. 8 F 0.58 6 1.31E- 01 11.7 LYM10 5 12297. 2 H 12.7 83 2.07E02 31.3
LYM20 3 12664. 1 F 0.63 3 2.49E01 20.5 LYM10 7 12631. 2 H 11.0 91 2.27E02 14
LYM20 3 12662. 3 F 0.69 4 2.67E01 32.3 LYM13 8 12561. 3 H 16.5 24 3.41E- 02 69.8
LYM24 2 13051. 8 F 0.58 2 3.48E01 10.9 LYM11 9 12461. 1 H 15.5 82 6.22E02 60.1
LYM20 7 13251. 6 F 0.56 1 3.53E01 6.8 LYM10 5 12293. 1 H 13.5 58 6.63E02 39.3
LYM24 2 13054. 9 F 0.57 4.74E01 8.5 LYM10 6 12141. 4 H 11.1 04 7.61E- 02 14.1
LYM21 2 13034. 8 F 0.58 7 5.70E01 11.8 LYM21 2 13032. 8 H 11.5 93 7.79E02 19.1
LYM16 5 12972. 6 F 0.55 7 5.84E01 6 LYM11 9 12463. 2 H 15.3 35 8.15E02 57.6
LYM16 5 12974. 5 F 0.57 8 6.31E- 01 10 LYM10 5 12295. 2 H 12.8 55 8.74E02 32.1
266
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 2 13034. 9 F 0.54 7.29E01 2.9 LYM17 3 12982. 6 H 10.6 59 8.92E02 9.5
LYM14 2 12804. 1 F 0.54 1 7.41E01 3 LYM11 1 12254. 4 H 11.4 42 9.17E02 17.6
LYM20 7 13251. 4 F 0.53 8 7.77E01 2.4 LYM17 4 12411. 2 H 13.7 91 1.04E01 41.7
LYM16 5 12973. 5 F 0.53 4 8.72E01 1.6 LYM22 0 12851. 8 H 15.0 87 1.22E01 55
LYM21 2 13032. 8 F 0.52 7 9.61E01 0.5 LYM10 5 12294. 3 H 10.8 46 1.28E01 11.4
CONTR OL F 0.52 5 0 LYM13 7 12151. 4 H 13.0 64 1.38E01 34.2
LYM20 3 12662. 3 G 10.7 73 2.09E01 11.7 LYM17 4 12412. 1 H 14.7 75 1.64E01 51.8
LYM22 3 12671. 2 G 10.2 17 5.89E01 6 LYM10 6 12142. 2 H 15.8 71 1.65E01 63.1
LYM21 2 13034. 8 G 10.0 24 7.08E01 4 LYM13 0 12332. 2 H 12.9 21 1.74E01 32.8
LYM14 2 12804. 1 G 9.73 1 8.40E01 0.9 LYM24 2 13051. 8 H 11.3 19 1.75E01 16.3
LYM27 0 12871. 7 G 9.68 1 9.77E01 0.4 LYM10 7 12632. 3 H 14.7 68 1.82E01 51.7
CONTR OL G 9.64 1 0 LYM15 2 12373. 1 H 11.0 22 2.05E01 13.2
LYM16 5 12973. 6 H 16.9 61 8.98E04 45.3 LYM13 7 12151. 1 H 12.6 58 2.07E01 30
LYM16 5 12973. 8 H 14.7 78 4.30E03 26.6 LYM15 3 12324. 1 H 14.1 97 2.09E01 45.9
LYM20 7 13251. 6 H 14.3 26 3.04E02 22.7 LYM10 7 12631. 4 H 11.1 47 2.14E01 14.5
LYM14 2 12804. 4 H 15.5 89 3.30E02 33.5 LYM11 9 12462. 1 H 14.8 06 2.26E01 52.1
LYM20 3 12664. 1 H 14.0 85 5.01E02 20.7 LYM13 8 12562. 2 H 12.0 98 2.27E01 24.3
LYM21 2 13034. 9 H 14.9 93 9.74E02 28.4 LYM28 9 12491. 1 H 10.6 24 2.38E01 9.1
LYM20 3 12662. 3 H 19.3 28 1.50E01 65.6 LYM17 4 12411. 3 H 15.5 39 2.45E01 59.6
LYM16 5 12972. 6 H 15.6 17 2.04E01 33.8 LYM13 7 12151. 2 H 12.6 94 2.45E01 30.4
LYM20 7 13251. 5 H 12.7 19 2.12E01 9 LYM15 3 12322. 1 H 10.7 28 2.52E01 10.2
LYM22 0 12851. 7 H 13.0 19 2.47E01 11.5 LYM11 1 12252. 2 H 12.3 72 2.55E01 27.1
LYM20 7 13251. 4 H 13.2 24 2.75E01 13.3 LYM28 8 12743. 8 H 11.7 15 2.62E01 20.4
LYM22 0 12851. 11 H 12.5 36 3.05E01 7.4 LYM28 7 12774. 6 H 10.4 25 2.70E01 7.1
LYM16 5 12974. 5 H 17.1 37 3.08E01 46.8 LYM28 8 12743. 5 H 14.2 37 2.75E01 46.3
LYM21 2 13032. 8 H 14.5 04 4.27E01 24.3 LYM24 2 13052. 5 H 10.9 22 2.99E01 12.2
267
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 2 13034. 8 H 15.1 69 4.30E01 29.9 LYM10 7 12631. 1 H 11.2 58 3.08E01 15.7
LYM14 2 12801. 8 H 12.8 3 4.42E01 9.9 LYM10 0 12131. 3 H 10.8 77 3.20E01 11.7
LYM14 2 12802. 9 H 12.8 29 4.65E01 9.9 LYM28 9 12491. 4 H 10.5 77 3.20E01 8.7
LYM24 2 13054. 9 H 13.5 01 4.67E01 15.7 LYM90 12395. 3 H 11.5 46 3.34E01 18.6
LYM24 2 13051. 8 H 14.4 12 5.21E- 01 23.5 LYM10 2 12222. 1 H 10.7 14 3.34E01 10.1
LYM14 2 12804. 3 H 12.4 9 5.36E01 7 LYM19 7 12821. 6 H 11.0 8 3.37E01 13.8
LYM16 5 12973. 5 H 12.6 26 6.39E01 8.2 LYM25 5 13082. 7 H 13.6 91 3.37E01 40.7
LYM22 3 12674. 2 H 11.9 68 7.07E01 2.5 LYM11 9 12462. 2 H 13.5 06 3.41E- 01 38.8
LYM14 2 12804. 1 H 12.3 27 8.32E01 5.6 LYM15 2 12371. 2 H 14.3 31 3.57E01 47.2
LYM20 3 12664. 2 H 12.0 83 8.49E01 3.5 LYM15 3 12321. 2 H 12.3 6 3.58E01 27
LYM27 0 12871. 7 H 11.7 94 8.95E01 1 LYM28 7 12771. 6 H 10.2 73 3.68E01 5.5
LYM27 0 12872. 7 H 11.7 54 9.22E01 0.7 LYM28 9 12493. 2 H 14.0 17 3.69E01 44
CONTR OL H 11.6 73 0 LYM10 6 12144. 3 H 12.3 56 3.75E01 26.9
LYM20 3 12662. 3 J 0.04 6 2.04E03 50.5 LYM25 5 13082. 5 H 14.4 81 3.83E01 48.8
LYM16 5 12973. 6 J 0.04 2 6.22E03 38.8 LYM28 8 12741. 9 H 11.8 34 4.12E01 21.6
LYM16 5 12974. 5 J 0.04 3 1.62E02 41 LYM13 8 12564. 1 H 11.6 16 4.26E01 19.3
LYM16 5 12972. 6 J 0.03 9 4.57E02 29.2 LYM29 1 12754. 9 H 12.3 03 4.35E01 26.4
LYM14 2 12804. 4 J 0.03 8 6.13E- 02 25.6 LYM10 2 12221. 1 H 10.8 24 4.81E01 11.2
LYM21 2 13034. 8 J 0.03 8 9.39E02 26.4 LYM15 2 12371. 3 H 11.5 86 4.88E01 19
LYM21 2 13034. 9 J 0.03 7 1.03E- 01 22.1 LYM25 5 13082. 9 H 10.8 51 5.04E01 11.5
LYM16 5 12973. 8 J 0.03 7 1.07E- 01 21.7 LYM13 0 12331. 3 H 12.7 14 5.44E01 30.6
LYM21 2 13032. 8 J 0.03 7 1.53E- 01 20.9 LYM21 2 13031. 6 H 10.1 72 5.47E01 4.5
LYM24 2 13051. 8 J 0.03 7 1.67E- 01 20.7 LYM14 3 12524. 7 H 11.9 39 5.72E01 22.7
LYM20 7 13251. 6 J 0.03 6 1.84E- 01 17.5 LYM17 3 12981. 5 H 10.6 49 5.74E01 9.4
LYM20 3 12664. 1 J 0.03 5 2.26E01 16 LYM10 6 12142. 3 H 10.1 39 5.74E01 4.2
LYM20 7 13251. 4 J 0.03 5 2.79E01 14.1 LYM14 2 12802. 9 H 11.0 41 5.91E- 01 13.4
268
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM14 2 12802. 9 J 0.03 5 3.01E01 14 LYM19 8 13005. 8 H 10.1 83 5.92E01 4.6
LYM22 0 12851. 7 J 0.03 5 3.06E01 13.9 LYM10 2 12222. 6 H 10.7 59 6.01E01 10.5
LYM24 2 13054. 9 J 0.03 4 3.48E01 13 LYM13 7 12154. 5 H 12.3 54 6.05E01 26.9
LYM16 5 12973. 5 J 0.03 4 3.92E01 12.3 LYM20 1 12834. 6 H 10.2 94 7.03E01 5.8
LYM14 2 12804. 3 J 0.03 3 4.73E01 9.4 LYM18 3 12994. 8 H 11.3 14 7.10E01 16.2
LYM20 3 12664. 2 J 0.03 3 5.96E01 7.4 LYM44 11885. 4 H 10.2 56 7.27E01 5.4
LYM22 0 12851. 11 J 0.03 2 6.35E01 6.1 LYM24 2 13053. 7 H 10.0 93 7.36E01 3.7
LYM14 2 12804. 1 J 0.03 2 6.79E01 6 LYM29 1 12753. 6 H 10.3 37 7.51E01 6.2
LYM24 2 13053. 7 J 0.03 2 6.82E01 5.5 LYM14 3 12524. 5 H 10.9 26 7.58E01 12.2
LYM14 2 12801. 8 J 0.03 1 7.91E01 3.5 LYM20 1 12833. 7 H 9.92 7 7.73E01 2
LYM27 0 12871. 7 J 0.03 1 8.11E01 3 LYM13 0 12333. 1 H 10.3 53 7.92E01 6.4
LYM22 3 12674. 2 J 0.03 1 9.08E01 1.6 LYM28 7 12773. 7 H 10.3 4 8.02E01 6.2
LYM20 7 13251. 5 J 0.03 1 9.50E01 0.8 LYM18 3 12993. 7 H 10.2 25 8.25E01 5
CONTR OL J 0.03 0 LYM18 3 12994. 7 H 9.92 4 8.96E01 2
LYM20 7 13251. 5 K 0.59 4 5.66E02 26.1 LYM21 2 13034. 9 H 10.1 57 9.25E01 4.4
LYM16 5 12973. 6 K 0.57 8 9.58E02 22.8 LYM20 8 13012. 5 H 9.99 2 9.35E01 2.7
LYM20 3 12664. 1 K 0.57 5 1.28E01 22.2 CONTR OL H 9.73 3 0
LYM20 3 12662. 3 K 0.56 4 1.31E01 19.8 LYM13 8 12561. 1 J 0.04 4 0.00E +00 114
LYM22 0 12851. 7 K 0.54 3 2.71E01 15.2 LYM11 9 12461. 1 J 0.03 7 1.00E06 76.2
LYM20 7 13251. 6 K 0.53 6 3.18E01 13.9 LYM13 8 12561. 3 J 0.03 5 5.00E06 69.7
LYM21 2 13034. 9 K 0.53 3.55E01 12.6 LYM17 4 12414. 3 J 0.03 6 1.20E05 71.7
LYM21 2 13034. 8 K 0.53 3 3.98E01 13.1 LYM11 9 12461. 4 J 0.03 4 1.30E05 64.1
LYM16 5 12974. 5 K 0.52 2 4.02E01 10.8 LYM11 9 12463. 2 J 0.03 4 1.90E05 64.3
LYM16 5 12973. 8 K 0.52 2 4.55E01 10.8 LYM10 7 12632. 3 J 0.03 4 7.40E05 63
LYM22 3 12672. 5 K 0.51 3 5.04E01 8.9 LYM10 6 12142. 2 J 0.03 4 1.01E04 65.8
LYM14 2 12804. 1 K 0.51 4 5.15E01 9.2 LYM15 3 12324. 1 J 0.03 3 1.07E04 60.5
269
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM22 3 12671. 2 K 0.51 2 5.28E01 8.8 LYM 15 3 12323. 2 J 0.03 2 1.80E04 53.5
LYM24 2 13054. 9 K 0.50 4 6.16E01 7.1 LYM 13 7 12151. 4 J 0.03 1 1.99E04 50.4
LYM21 2 13032. 8 K 0.50 1 6.28E01 6.4 LYM22 0 12851. 8 J 0.03 2 2.34E04 54.5
LYM22 3 12674. 5 K 0.49 6 6.88E01 5.3 LYM 13 0 12332. 1 J 0.03 1 2.64E04 50.1
LYM21 2 13033. 6 K 0.48 9 7.67E01 4 LYM 17 4 12411. 3 J 0.03 4 3.59E04 63.7
LYM 16 5 12972. 6 K 0.49 1 7.69E01 4.3 LYM 10 5 12293. 1 J 0.03 1 6.37E04 49.9
LYM20 3 12663. 2 K 0.48 8 7.77E01 3.6 LYM 17 4 12412. 1 J 0.03 2 8.23E04 51.7
LYM 14 2 12804. 4 K 0.48 8.75E01 2 LYM 10 5 12295. 2 J 0.03 1 1.04E03 48
LYM20 7 13252. 2 K 0.47 9 8.90E01 1.8 LYM28 9 12493. 1 J 0.03 1.42E03 44.8
LYM24 2 13051. 8 K 0.47 9 8.95E01 1.7 LYM25 5 13082. 5 J 0.03 2 1.50E03 56.1
LYM 14 2 12801. 8 K 0.47 9 9.03E01 1.7 LYM 15 3 12324. 2 J 0.03 1.83E03 45.6
LYM27 0 12872. 5 K 0.47 9 9.09E01 1.7 LYM 10 6 12144. 4 J 0.02 9 1.94E03 40.2
LYM21 2 13032. 6 K 0.47 7 9.20E01 1.4 LYM 10 2 12222. 2 J 0.02 9 2.58E03 41.7
LYM20 7 13251. 4 K 0.47 7 9.26E01 1.2 LYM28 8 12743. 5 J 0.03 2.77E03 46
LYM22 0 12851. 13 K 0.47 7 9.27E01 1.2 LYM 10 5 12294. 2 J 0.02 9 3.58E03 39
LYM 14 2 12803. 6 K 0.47 6 9.37E01 1.1 LYM 17 4 12411. 2 J 0.03 3.72E03 44.5
CONTR OL K 0.47 1 0 LYM 13 7 12151. 1 J 0.02 9 3.78E03 38.1
LYM20 3 12662. 3 L 2.45 4 6.01E04 67.5 LYM 11 9 12462. 1 J 0.03 3.98E03 43.3
LYM 16 5 12973. 6 L 2.13 8 6.78E03 45.9 LYM28 8 12743. 9 J 0.02 9 4.98E03 37.8
LYM 16 5 12974. 5 L 2.15 1.34E02 46.8 LYM 15 2 12371. 2 J 0.03 1 5.43E03 50.5
LYM 14 2 12804. 4 L 1.96 1 3.94E02 33.9 LYM 13 8 12562. 2 J 0.02 9 5.54E03 38.3
LYM 16 5 12972. 6 L 1.94 8 5.24E02 33 LYM 13 7 12151. 2 J 0.02 8 6.64E03 36.8
LYM21 2 13034. 9 L 1.86 2 9.49E02 27.2 LYM 17 3 12981. 6 J 0.02 8 7.33E03 34.4
LYM21 2 13034. 8 L 1.90 5 9.76E02 30 LYM27 0 12873. 6 J 0.02 8 7.96E03 36.4
LYM 16 5 12973. 8 L 1.83 2 1.21E01 25.1 LYM25 5 13082. 8 J 0.02 8 8.97E03 35.1
LYM20 7 13251. 6 L 1.81 9 1.25E01 24.2 LYM 11 9 12462. 2 J 0.02 9 1.07E02 37.4
270
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM20 3 12664. 1 L 1.79 6 1.54E01 22.6 LYM25 5 13082. 7 J 0.02 9 1.24E02 37.2
LYM21 2 13032. 8 L 1.80 7 1.78E01 23.3 LYM21 2 13032. 8 J 0.02 7 1.37E02 31.2
LYM24 2 13051. 8 L 1.79 2 1.99E01 22.3 LYM 15 3 12321. 2 J 0.02 7 1.78E02 31.6
LYM24 2 13054. 9 L 1.70 9 3.00E01 16.7 LYM 10 5 12297. 2 J 0.02 7 1.78E02 30.6
LYM20 7 13251. 4 L 1.68 5 3.34E01 15 LYM 11 1 12252. 2 J 0.02 7 2.00E02 31.9
LYM22 0 12851. 7 L 1.65 2 4.23E01 12.8 LYM 13 0 12334. 1 J 0.02 6 2.61E02 26.9
LYM 14 2 12802. 9 L 1.61 8 5.12E01 10.5 LYM 10 6 12144. 3 J 0.02 7 2.82E02 30.8
LYM 16 5 12973. 5 L 1.59 5 5.81E01 8.9 LYM28 9 12493. 2 J 0.02 8 3.23E02 34.8
LYM20 7 13251. 5 L 1.58 9 5.87E01 8.5 LYM 13 7 12153. 1 J 0.02 6 3.50E02 26.5
LYM 14 2 12804. 3 L 1.58 1 6.12E01 7.9 LYM 15 2 12373. 1 J 0.02 6 3.60E02 26.5
LYM 14 2 12801. 8 L 1.56 8 6.52E01 7.1 LYM 19 7 12821. 6 J 0.02 6 3.74E02 25.9
LYM22 0 12851. 11 L 1.56 4 6.64E01 6.7 LYM 13 0 12332. 2 J 0.02 6 4.55E02 27.4
LYM 14 2 12804. 1 L 1.55 7.25E01 5.8 LYM90 12395. 3 J 0.02 6 4.79E02 25.8
LYM20 3 12664. 2 L 1.52 4 7.99E01 4.1 LYM28 8 12743. 8 J 0.02 6 5.52E02 24.7
LYM22 3 12674. 2 L 1.50 8 8.52E01 3 LYM28 7 12771. 6 J 0.02 6 5.89E02 23.5
LYM24 2 13053. 7 L 1.49 1 9.09E01 1.8 LYM20 1 12833. 7 J 0.02 5 6.60E02 22.3
LYM27 0 12871. 7 L 1.47 1 9.76E01 0.5 LYM 10 2 12222. 3 J 0.02 6 7.07E02 22.7
LYM20 3 12663. 2 L 1.46 7 9.91E01 0.2 LYM 17 3 12981. 5 J 0.02 6 7.84E02 23.1
CONTR OL L 1.46 5 0 LYM29 1 12754. 9 J 0.02 6 8.08E02 26.4
LYM20 3 12662. 3 M 0.30 7 6.02E04 65.1 LYM 11 1 12254. 4 J 0.02 5 8.41E02 22
LYM 16 5 12973. 6 M 0.26 7 7.02E03 43.8 LYM 13 0 12331. 3 J 0.02 7 8.47E02 31
LYM 16 5 12974. 5 M 0.26 9 1.43E02 44.6 LYM 15 3 12322. 1 J 0.02 5 1.13E01 19.3
LYM 14 2 12804. 4 M 0.24 5 4.25E02 31.9 LYM 10 2 12221. 1 J 0.02 5 1.20E01 20
LYM 16 5 12972. 6 M 0.24 4 5.69E02 31 LYM 10 7 12631. 4 J 0.02 5 1.20E01 20.2
LYM21 2 13034. 9 M 0.23 3 1.04E01 25.3 LYM 14 3 12524. 7 J 0.02 6 1.22E01 26.9
LYM21 2 13034. 8 M 0.23 8 1.07E01 28.1 LYM 10 2 12222. 1 J 0.02 5 1.30E01 19.7
271
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 16 5 12973. 8 M 0.22 9 1.33E- 01 23.2 LYM 18 3 12994. 8 J 0.02 6 1.32E- 01 24.3
LYM20 7 13251. 6 M 0.22 7 1.38E- 01 22.4 LYM 10 7 12631. 2 J 0.02 5 1.38E- 01 18.9
LYM20 3 12664. 1 M 0.22 4 1.69E- 01 20.8 LYM28 8 12741. 9 J 0.02 5 1.56E- 01 19.2
LYM21 2 13032. 8 M 0.22 6 1.96E- 01 21.5 LYM21 2 13031. 6 J 0.02 4 1.70E- 01 16.3
LYM24 2 13051. 8 M 0.22 4 2.19E01 20.5 LYM 13 7 12154. 5 J 0.02 6 1.75E- 01 22.8
LYM24 2 13054. 9 M 0.21 4 3.31E- 01 14.9 LYM28 9 12492. 2 J 0.02 5 1.76E- 01 20.6
LYM20 7 13251. 4 M 0.21 1 3.69E01 13.3 LYM 15 2 12371. 3 J 0.02 5 1.77E01 20.4
LYM22 0 12851. 7 M 0.20 6 4.66E01 11.1 LYM 13 8 12564. 1 J 0.02 5 1.84E- 01 19
LYM 14 2 12802. 9 M 0.20 2 5.62E01 8.9 LYM24 2 13051. 8 J 0.02 4 1.87E- 01 17.1
LYM 16 5 12973. 5 M 0.19 9 6.37E01 7.3 LYM 10 5 12294. 3 J 0.02 4 1.91E- 01 16.8
LYM20 7 13251. 5 M 0.19 9 6.45E01 6.9 LYM 10 6 12141. 4 J 0.02 4 1.95E- 01 16.3
LYM 14 2 12804. 3 M 0.19 8 6.72E01 6.3 LYM25 5 13082. 9 J 0.02 4 2.05E01 16.4
LYM 14 2 12801. 8 M 0.19 6 7.14E- 01 5.5 LYM 13 0 12333. 1 J 0.02 4 2.15E01 16.4
LYM22 0 12851. 11 M 0.19 5 7.28E01 5.2 LYM 14 2 12802. 9 J 0.02 4 2.26E01 17.3
LYM 14 2 12804. 1 M 0.19 4 7.89E01 4.3 LYM24 2 13052. 5 J 0.02 4 2.31E01 14.8
LYM20 3 12664. 2 M 0.19 1 8.68E01 2.5 LYM 10 7 12631. 1 J 0.02 4 2.35E01 15.8
LYM22 3 12674. 2 M 0.18 8 9.25E01 1.4 LYM 18 3 12993. 5 J 0.02 4 2.40E01 15.5
LYM24 2 13053. 7 M 0.18 6 9.85E01 0.3 LYM20 1 12834. 6 J 0.02 4 2.60E01 13.6
CONTR OL M 0.18 6 0 LYM 18 3 12993. 7 J 0.02 4 2.63E01 15.1
LYM20 3 12662. 3 N 0.26 4 3.40E02 25.7 LYM 10 6 12142. 3 J 0.02 4 3.01E- 01 13.1
LYM 16 5 12973. 6 N 0.25 2 7.08E02 19.8 LYM21 2 13034. 9 J 0.02 4 3.25E01 17.3
LYM20 7 13251. 6 N 0.23 9 2.15E01 13.5 LYM 10 7 12632. 1 J 0.02 3 3.27E01 13
LYM 16 5 12974. 5 N 0.24 5 2.21E01 16.6 LYM 10 2 12222. 6 J 0.02 3 3.49E01 12.4
LYM20 3 12664. 1 N 0.23 6 2.76E01 12.4 LYM 14 3 12524. 5 J 0.02 4 3.52E01 15.7
LYM 16 5 12972. 6 N 0.23 8 2.78E01 13.2 LYM29 1 12753. 6 J 0.02 3 3.61E- 01 12.4
LYM21 2 13034. 9 N 0.23 5 2.89E01 11.8 LYM 19 8 13005. 8 J 0.02 3 3.80E01 10.4
272
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 2 13034. 8 N 0.23 8 2.99E01 13.2 LYM28 7 12771. 7 J 0.02 3 4.35E01 9.5
LYM 14 2 12804. 4 N 0.22 7 4.59E01 8 LYM20 1 12833. 9 J 0.02 3 4.54E01 9.4
LYM 16 5 12973. 8 N 0.22 2 6.03E01 5.6 LYM 14 2 12804. 3 J 0.02 3 4.60E01 11.2
LYM24 2 13053. 7 N 0.22 2 6.06E01 5.7 LYM27 0 12871. 7 J 0.02 3 4.62E01 9.4
LYM 14 2 12804. 1 N 0.22 3 6.06E01 5.9 LYM 14 2 12801. 8 J 0.02 3 4.62E01 9
LYM 14 2 12802. 9 N 0.22 6.96E01 4.3 LYM28 7 12773. 7 J 0.02 3 4.62E01 10.2
LYM24 2 13051. 8 N 0.21 8 7.46E01 3.8 LYM28 9 12491. 4 J 0.02 3 4.64E01 8.6
LYM27 0 12871. 7 N 0.21 8 7.46E01 3.5 LYM 17 3 12982. 7 J 0.02 3 4.68E01 11.3
LYM 16 5 12973. 5 N 0.21 7 7.75E01 3.3 LYM20 8 13012. 5 J 0.02 3 4.71E01 12.1
LYM22 0 12851. 7 N 0.21 7 7.88E01 3.1 LYM44 11885. 4 J 0.02 2 5.57E01 7.6
LYM21 2 13032. 8 N 0.21 7 7.96E01 3 LYM 10 5 12297. 1 J 0.02 2 5.76E01 7.3
LYM24 2 13054. 9 N 0.21 3 9.14E01 1.2 LYM27 0 12871. 8 J 0.02 2 5.94E01 7.6
LYM20 7 13251. 4 N 0.21 3 9.16E01 1.1 LYM25 5 13081. 5 J 0.02 2 5.99E01 8
LYM20 3 12664. 2 N 0.21 3 9.31E01 1 LYM27 0 12871. 5 J 0.02 3 6.13E01 9.1
LYM 14 2 12804. 3 N 0.21 2 9.52E01 0.6 LYM 11 1 12251. 1 J 0.02 2 6.31E01 5.9
LYM20 3 12663. 2 N 0.21 1 9.76E01 0.3 LYM28 9 12491. 1 J 0.02 2 6.50E01 5.6
LYM22 0 12851. 11 N 0.21 1 9.90E01 0.1 LYM24 2 13053. 7 J 0.02 2 6.73E01 5.4
CONTR OL N 0.21 0 LYM 18 3 12994. 7 J 0.02 2 7.41E01 4.1
LYM 16 5 12973. 6 O 2.12 1.10E03 43.2 LYM27 0 12872. 7 J 0.02 2 7.82E01 3.7
LYM 16 5 12973. 8 O 1.84 7 4.09E03 24.8 LYM 19 7 12824. 4 J 0.02 1 7.94E01 3.2
LYM20 7 13251. 6 o 1.79 1 3.64E02 20.9 LYM28 7 12774. 6 J 0.02 2 7.96E01 3.5
LYM 14 2 12804. 4 o 1.94 9 4.00E02 31.6 LYM 17 3 12982. 6 J 0.02 1 8.19E01 2.9
LYM20 3 12664. 1 o 1.76 1 6.02E02 18.9 LYM20 8 13013. 6 J 0.02 1 8.22E01 3
LYM21 2 13034. 9 o 1.87 4 1.12E01 26.6 LYM 10 0 12131. 3 J 0.02 1 8.23E01 2.8
LYM20 3 12662. 3 o 2.41 6 1.58E01 63.2 LYM 14 3 12521. 2 J 0.02 1 8.76E01 2
LYM 16 5 12972. 6 o 1.95 2 2.19E01 31.8 LYM 14 3 12523. 4 J 0.02 1 8.78E01 2.7
273
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM20 7 13251. 5 O 1.59 2.62E01 ΊΑ LYM21 2 13034. 8 J 0.02 1 8.79E01 1.9
LYM22 0 12851. 7 o 1.62 7 2.95E01 9.9 LYM19 8 13004. 6 J 0.02 1 8.86E01 1.7
LYM20 7 13251. 4 o 1.65 3 3.18E- 01 11.6 LYM14 3 12521. 1 J 0.02 1 9.11E01 1.3
LYM16 5 12974. 5 o 2.14 2 3.19E- 01 44.7 LYM29 1 12751. 2 J 0.02 1 9.32E01 1
LYM22 0 12851. 11 o 1.56 7 3.79E01 5.8 LYM10 0 12133. 3 J 0.02 1 9.61E01 0.6
LYM21 2 13034. 8 o 1.89 6 4.48E01 28.1 LYM15 2 12372. 2 J 0.02 1 9.80E01 0.3
LYM21 2 13032. 8 o 1.81 3 4.49E01 22.4 LYM20 8 13012. 8 J 0.02 1 9.84E01 0.3
LYM14 2 12801. 8 o 1.60 4 5.02E01 8.3 CONTR OL J 0.02 1 0
LYM24 2 13054. 9 o 1.68 8 5.03E01 14 LYM28 8 12741. 9 K 0.71 3 2.72E01 13.6
LYM14 2 12802. 9 o 1.60 4 5.24E01 8.3 LYM11 9 12462. 2 K 0.70 6 3.08E01 12.4
LYM24 2 13051. 8 o 1.80 2 5.42E01 21.7 LYM28 9 12493. 1 K 0.70 4 3.13E- 01 12.1
LYM14 2 12804. 3 o 1.56 1 6.15E- 01 5.4 LYM14 2 12804. 1 K 0.69 5 3.86E01 10.7
LYM16 5 12973. 5 o 1.57 8 6.95E01 6.6 LYM44 11882. 1 K 0.69 5 3.88E01 10.7
LYM22 3 12674. 2 o 1.49 6 8.67E01 1 LYM14 3 12524. 7 K 0.68 8 4.41E01 9.5
LYM14 2 12804. 1 o 1.54 1 8.75E01 4.1 LYM61 13174. 7 K 0.69 5 4.79E01 10.7
LYM20 3 12664. 2 o 1.51 9.11E01 2 LYM11 9 12461. 4 K 0.67 6 5.05E01 7.6
CONTR OL o 1.48 1 0 LYM13 7 12154. 5 K 0.67 5 5.37E01 7.5
LYM16 5 12973. 6 P 2.64 3 2.53E03 17.9 LYM61 13174. 5 K 0.67 5 5.82E01 7.5
LYM20 7 13251. 6 P 2.52 5 1.43E02 12.6 LYM18 3 12994. 7 K 0.66 5 6.12E- 01 5.9
LYM16 5 12973. 8 P 2.47 2 3.44E02 10.2 LYM10 2 12222. 3 K 0.66 3 6.21E- 01 5.6
LYM20 3 12662. 3 P 2.9 8.02E02 29.3 LYM17 4 12414. 3 K 0.66 3 6.23E01 5.6
LYM14 2 12804. 4 P 2.42 1.34E- 01 7.9 LYM22 0 12851. 8 K 0.65 7 6.76E01 4.7
LYM20 7 13251. 4 P 2.38 9 1.67E- 01 6.5 LYM25 5 13082. 7 K 0.65 7 6.95E01 4.7
LYM20 3 12664. 1 P 2.47 8 3.11E- 01 10.5 LYM28 9 12493. 2 K 0.65 3 7.43E01 4
LYM21 2 13034. 9 P 2.45 3.23E01 9.2 LYM19 8 13005. 8 K 0.65 7.67E01 3.5
LYM16 5 12972. 6 P 2.55 8 3.80E01 14.1 LYM11 1 12252. 2 K 0.64 9 7.68E01 3.3
274
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM27 0 12871. 7 P 2.31 4 4.47E01 3.2 LYM90 12395. 1 K 0.65 7.75E01 3.5
LYM21 2 13032. 8 P 2.37 4.77E01 5.7 LYM24 2 13052. 5 K 0.64 9 7.83E01 3.3
LYM 16 5 12974. 5 P 2.60 7 4.77E01 16.2 LYM28 9 12491. 1 K 0.64 7 7.89E01 3
LYM24 2 13051. 8 P 2.42 2 4.96E01 8 LYM 15 3 12322. 1 K 0.64 5 8.11E- 01 2.7
LYM21 2 13034. 8 P 2.57 5.11E- 01 14.6 LYM 10 5 12297. 2 K 0.64 4 8.23E01 2.7
LYM24 2 13054. 9 P 2.35 8 6.45E01 5.1 LYM44 11885. 3 K 0.64 3 8.28E01 2.5
LYM 14 2 12802. 9 P 2.28 6 6.67E01 1.9 LYM 10 2 12222. 6 K 0.64 3 8.39E01 2.5
LYM 16 5 12973. 5 P 2.31 5 7.84E01 3.2 LYM28 8 12744. 7 K 0.64 3 8.42E01 2.5
LYM20 3 12664. 2 P 2.28 8.53E01 1.7 LYM29 1 12754. 9 K 0.64 3 8.48E01 2.5
LYM 14 2 12804. 1 P 2.27 6 8.85E01 1.5 LYM 10 7 12631. 4 K 0.64 1 8.56E01 2.1
LYM22 0 12851. 7 P 2.26 9.04E01 0.8 LYM29 1 12751. 7 K 0.64 8.64E01 2
LYM27 0 12872. 7 P 2.25 9.41E01 0.3 LYM28 8 12743. 9 K 0.64 8.66E01 2
LYM 14 2 12804. 3 P 2.24 5 9.83E01 0.1 LYM 17 4 12414. 2 K 0.64 8.72E01 2
CONTR OL P 2.24 3 0 LYM90 12392. 1 K 0.64 8.76E01 1.9
LYM4 11701. 1 A 93.6 53 1.73E03 4 LYM 14 3 12523. 4 K 0.64 1 8.77E01 2.1
LYM21 11672. 4 A 93.5 89 1.90E- 03 3.9 LYM 11 1 12251. 3 K 0.63 9 8.79E01 1.8
LYM 16 2 12231. 3 A 93.4 2.63E03 3.7 LYM 10 2 12221. 1 K 0.63 6 9.12E01 1.3
LYM1 11602. 6 A 93.3 52 2.88E03 3.7 LYM 10 2 12221. 2 K 0.63 3 9.47E01 0.8
LYM4 11702. 3 A 93.2 89 3.25E03 3.6 LYM 17 4 12412. 1 K 0.63 1 9.60E01 0.6
LYM 12 9 12571. 3 A 93.2 81 3.37E03 3.6 LYM25 5 13082. 8 K 0.63 9.70E01 0.4
LYM2 11692. 3 A 93.1 97 3.86E03 3.5 LYM 13 7 12152. 1 K 0.62 9 9.82E01 0.3
LYM2 11695. 3 A 93.1 69 4.02E03 3.5 LYM44 11884. 1 K 0.62 8 9.94E01 0.1
LYM 17 4 12411. 2 A 93.1 89 4.79E03 3.5 CONTR OL K 0.62 8 0
LYM 12 9 12573. 5 A 93.2 64 5.07E03 3.6 LYM 13 8 12561. 1 L 2.7 0.00E +00 124.8
LYM9 11632. 2 A 92.9 63 5.75E03 3.2 LYM 17 4 12414. 3 L 2.07 5 1.50E- 05 72.8
LYM9 11634. 5 A 92.7 88 8.06E03 3 LYM 13 8 12561. 3 L 2.06 2 2.00E05 71.7
275
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM1 11602. 1 A 92.6 34 1.10E02 2.9 LYM 11 9 12461. 4 L 2.01 6 4.40E05 67.8
LYM 17 11684. 5 A 92.5 39 1.23E02 2.8 LYM 11 9 12461. 1 L 1.97 8 1.02E- 04 64.7
LYM 11 1 12251. 3 A 92.4 4 1.48E02 2.6 LYM 13 0 12332. 1 L 1.89 5 1.67E- 04 57.8
LYM 16 2 12234. 4 A 92.5 26 1.48E02 2.7 LYM 10 6 12142. 2 L 1.96 9 3.33E04 63.9
LYM4 11706. 5 A 92.4 04 1.58E02 2.6 LYM 11 9 12463. 2 L 1.88 4 4.03E04 56.8
LYM 13 0 12333. 1 A 92.7 28 1.74E- 02 3 LYM22 0 12851. 8 L 1.88 5.61E- 04 56.5
LYM 14 3 12521. 1 A 92.3 55 1.77E02 2.5 LYM 17 4 12411. 3 L 1.93 1 8.78E04 60.7
LYM28 9 12491. 4 A 92.2 93 1.95E02 2.5 LYM 17 4 12412. 1 L 1.83 1 1.48E- 03 52.4
LYM 14 3 12523. 4 A 92.2 43 2.22E02 2.4 LYM28 9 12493. 1 L 1.80 5 1.50E- 03 50.2
LYM 13 0 12331. 3 A 92.6 7 2.48E02 2.9 LYM 10 7 12632. 3 L 1.79 9 2.47E03 49.7
LYM4 11706. 3 A 92.1 34 2.66E02 2.3 LYM 15 3 12323. 2 L 1.78 1 2.51E03 48.2
LYM29 0 12502. 1 A 93.9 71 2.67E02 4.3 LYM 15 3 12324. 1 L 1.79 8 2.61E03 49.7
LYM 17 11683. 1 A 93.1 89 2.71E02 3.5 LYM 11 9 12462. 1 L 1.78 5.10E- 03 48.1
LYM 17 11681. 4 A 92.3 82 2.78E02 2.6 LYM28 8 12743. 9 L 1.70 4 5.72E03 41.9
LYM 13 2 12275. 1 A 92.0 86 2.93E02 2.2 LYM25 5 13082. 5 L 1.82 6 5.79E03 52
LYM26 8 12482. 3 A 92.7 99 3.40E02 3 LYM25 5 13082. 8 L 1.68 7 7.22E03 40.4
LYM 14 3 12524. 7 A 92.0 03 3.43E02 2.2 LYM28 8 12743. 5 L 1.74 5 8.60E03 45.3
LYM 16 11623. 5 A 91.9 94 3.52E02 2.1 LYM25 5 13082. 7 L 1.71 9 1.08E02 43.1
LYM 10 0 12131. 3 A 93.2 35 3.92E02 3.5 LYM 15 3 12324. 2 L 1.66 1 1.28E02 38.3
LYM 14 1 12404. 3 A 92.2 79 3.95E02 2.5 LYM 11 9 12462. 2 L 1.70 5 1.33E02 42
LYM9 11633. 7 A 91.9 68 4.61E02 2.1 LYM 10 2 12222. 2 L 1.64 2 1.38E02 36.7
LYM 16 11623. 2 A 91.9 48 4.62E02 2.1 LYM 15 2 12371. 2 L 1.73 2 1.45E02 44.2
LYM 11 3 12441. 4 A 91.8 32 4.82E02 2 LYM 10 5 12293. 1 L 1.64 8 1.48E02 37.1
LYM 16 11622. 2 A 91.7 95 5.19E- 02 1.9 LYM 13 7 12151. 4 L 1.62 5 1.60E02 35.3
LYM28 9 12491. 1 A 92.5 54 5.47E02 2.8 LYM 17 4 12411. 2 L 1.65 1 1.70E02 37.4
LYM 17 4 12414. 2 A 91.8 86 5.60E02 2 LYM28 9 12493. 2 L 1.71 5 1.88E02 42.8
276
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 11612. 3 A 92.3 6.55E02 2.5 LYM 10 6 12144. 4 L 1.58 8 2.45E02 32.2
LYM 14 3 12521. 2 A 92.3 39 6.73E02 2.5 LYM 10 5 12295. 2 L 1.59 4 2.68E02 32.7
LYM22 11762. 2 A 92.0 49 7.65E02 2.2 LYM 10 5 12297. 2 L 1.59 1 2.80E02 32.4
LYM 14 8 12173. 1 A 93.6 23 7.77E02 4 LYM 13 0 12332. 2 L 1.58 5 2.81E02 31.9
LYM26 8 12483. 4 A 92.1 1 7.91E02 2.3 LYM 13 0 12334. 1 L 1.57 2.87E02 30.7
LYM 15 3 12323. 2 A 92.0 18 8.66E02 2.2 LYM27 0 12873. 6 L 1.55 8 4.30E02 29.7
LYM 12 9 12572. 4 A 95.4 26 8.79E02 6 LYM 11 1 12252. 2 L 1.56 4.53E02 29.8
LYM 15 2 12373. 1 A 92.9 94 9.17E02 3.3 LYM 15 3 12321. 2 L 1.56 6 4.59E02 30.4
LYM 16 11624. 6 A 91.6 07 9.39E02 1.7 LYM 13 7 12151. 1 L 1.54 8 4.97E02 28.8
LYM 11 1 12251. 1 A 91.5 31 9.51E02 1.6 LYM 13 7 12151. 2 L 1.54 3 6.15E02 28.5
LYM 10 2 12222. 3 A 91.6 11 1.04E01 1.7 LYM 10 5 12294. 2 L 1.50 2 7.39E02 25.1
LYM 15 2 12371. 3 A 91.4 65 1.08E01 1.6 LYM 10 6 12144. 3 L 1.53 1 7.99E02 27.4
LYM 10 5 12293. 1 A 92.8 55 1.10E01 3.1 LYM 13 8 12562. 2 L 1.51 8.00E02 25.7
LYM 14 8 12171. 2 A 97.1 89 1.13E01 7.9 LYM29 1 12754. 9 L 1.52 4 8.85E02 26.8
LYM3 12041. 2 A 91.8 2 1.20E01 2 LYM 13 0 12331. 3 L 1.58 4 9.07E02 31.9
LYM29 0 12502. 4 A 92.5 41 1.25E01 2.8 LYM 13 7 12154. 5 L 1.53 5 1.33E01 27.8
LYM22 11762. 1 A 91.5 81 1.28E01 1.7 LYM 14 3 12524. 7 L 1.50 4 1.44E01 25.2
LYM26 8 12482. 1 A 91.5 18 1.36E01 1.6 LYM28 9 12492. 2 L 1.44 2 1.47E01 20.1
LYM3 12043. 1 A 92.1 54 1.37E01 2.3 LYM 10 2 12222. 3 L 1.44 1.55E01 19.8
LYM 11 1 12252. 2 A 92.0 17 1.44E01 2.2 LYM28 8 12741. 9 L 1.45 1 1.68E01 20.8
LYM 13 8 12561. 3 A 91.7 41 1.49E01 1.9 LYM 17 3 12981. 6 L 1.42 7 1.71E01 18.8
LYM 14 8 12172. 1 A 91.8 54 1.50E01 2 LYM 13 7 12153. 1 L 1.42 7 1.79E01 18.8
LYM 15 11611. 3 A 91.2 82 1.57E01 1.4 LYM 13 8 12564. 1 L 1.43 2 1.94E01 19.2
LYM 13 4 12313. 2 A 92.9 27 1.58E01 3.2 LYM90 12395. 3 L 1.42 5 1.97E01 18.6
LYM 14 1 12404. 2 A 92.6 66 1.60E01 2.9 LYM 15 2 12371. 3 L 1.43 9 2.02E01 19.8
LYM 15 11612. 2 A 92.3 99 1.67E01 2.6 LYM21 2 13032. 8 L 1.40 9 2.12E01 17.3
277
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 13 8 12561. 1 A 91.6 67 1.72E01 1.8 LYM28 8 12743. 8 L 1.41 2.21E01 17.4
LYM 10 11741. 2 A 93.0 84 1.84E01 3.4 LYM 11 1 12254. 4 L 1.39 6 2.43E01 16.2
LYM2 11693. 3 A 91.3 11 1.94E01 1.4 LYM 19 7 12821. 6 L 1.38 3 2.76E01 15.1
LYM 13 11772. 1 A 91.1 62 1.96E01 1.2 LYM24 2 13051. 8 L 1.37 6 3.06E01 14.6
LYM 15 2 12371. 2 A 94.0 35 1.98E01 4.4 LYM 10 7 12631. 4 L 1.36 7 3.11E01 13.8
LYM 14 1 12404. 4 A 91.3 82 2.00E01 1.5 LYM24 2 13052. 5 L 1.37 1 3.18E01 14.1
LYM26 8 12483. 2 A 91.0 85 2.10E01 1.1 LYM 15 3 12322. 1 L 1.35 6 3.52E01 12.8
LYM29 0 12502. 2 A 91.2 45 2.10E01 1.3 LYM 10 6 12141. 4 L 1.35 5 3.53E01 12.8
LYM 13 2 12276. 1 A 91.9 05 2.21E01 2 LYM 15 2 12373. 1 L 1.35 4 3.59E01 12.7
LYM 13 0 12332. 1 A 91.4 23 2.26E01 1.5 LYM 10 7 12631. 2 L 1.35 6 3.69E01 12.9
LYM 13 7 12154. 5 A 92.6 34 2.36E01 2.9 LYM 10 7 12631. 1 L 1.35 4 3.80E01 12.7
LYM 14 1 12402. 4 A 92.7 47 2.36E01 3 LYM 10 2 12221. 1 L 1.35 1 3.82E01 12.4
LYM 13 11771. 6 A 92.6 02 2.48E01 2.8 LYM 18 3 12994. 8 L 1.38 5 3.83E01 15.3
LYM 15 11614. 3 A 90.9 56 2.69E01 1 LYM 10 5 12294. 3 L 1.32 1 4.64E01 10
LYM22 11764. 7 A 92.1 54 2.90E01 2.3 LYM 17 3 12981. 5 L 1.32 4.93E01 9.9
LYM 13 2 12273. 2 A 91.6 78 2.99E01 1.8 LYM28 9 12491. 4 L 1.31 2 5.04E01 9.2
LYM 11 9 12462. 1 A 92.8 84 2.99E01 3.1 LYM 10 2 12222. 1 L 1.31 5.15E01 9.1
LYM9 11633. 2 A 92.3 7 3.05E01 2.6 LYM25 5 13082. 9 L 1.31 4 5.16E01 9.4
LYM1 11603. 2 A 91.1 05 3.08E01 1.2 LYM 14 3 12524. 5 L 1.33 5 5.26E01 11.1
LYM 17 11682. 1 A 91.5 75 3.09E01 1.7 LYM28 9 12491. 1 L 1.30 5 5.32E01 8.6
LYM 19 11751. 5 A 91.9 71 3.18E01 2.1 LYM 14 2 12802. 9 L 1.31 6 5.37E01 9.5
LYM 10 11744. 1 A 90.9 73 3.22E01 1 LYM 10 0 12131. 3 L 1.3 5.51E01 8.2
LYM 11 9 12463. 2 A 91.6 19 3.27E01 1.7 LYM 10 2 12222. 6 L 1.30 3 5.63E01 8.5
LYM 16 11624. 4 A 91.3 28 3.34E01 1.4 LYM28 7 12774. 6 L 1.28 2 6.30E01 6.7
LYM 14 1 12404. 1 A 90.8 94 3.38E01 0.9 LYM 13 0 12333. 1 L 1.27 4 6.78E01 6
LYM 19 11751. 4 A 92.3 74 3.42E01 2.6 LYM 19 8 13005. 8 L 1.26 6 6.94E01 5.4
278
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 11684. 4 A 91.3 21 3.42E01 1.4 LYM 18 3 12993. 7 L 1.27 7.00E01 5.7
LYM 17 4 12411. 3 A 90.9 96 3.43E01 1 LYM 10 6 12142. 3 L 1.26 5 7.00E01 5.3
LYM 10 5 12297. 1 A 92.5 11 3.51E01 2.7 LYM 18 3 12994. 7 L 1.26 4 7.06E01 5.3
LYM 15 2 12372. 2 A 91.6 33 3.54E01 1.7 LYM20 1 12834. 6 L 1.26 1 7.14E01 5
LYM 15 3 12324. 2 A 90.8 81 3.57E01 0.9 LYM29 1 12753. 6 L 1.26 3 7.29E01 5.1
LYM28 9 12493. 6 A 90.7 91 3.59E01 0.8 LYM28 7 12771. 6 L 1.25 8 7.30E01 4.7
LYM 13 0 12332. 2 A 92.2 23 3.66E01 2.4 LYM28 7 12773. 7 L 1.26 3 7.39E01 5.1
LYM 10 11744. 5 A 93.0 31 3.89E01 3.3 LYM21 2 13031. 6 L 1.25 5 7.40E01 4.4
LYM 14 3 12524. 2 A 90.7 7 4.06E01 0.8 LYM44 11885. 4 L 1.25 4 7.56E01 4.4
LYM 10 6 12141. 4 A 90.7 74 4.06E01 0.8 LYM21 2 13034. 9 L 1.26 7 7.63E01 5.5
LYM21 11671. 2 A 91.5 32 4.18E01 1.6 LYM 17 3 12982. 6 L 1.23 8.61E01 2.4
LYM29 0 12504. 1 A 91.0 68 4.24E01 1.1 LYM20 1 12833. 7 L 1.22 7 8.72E01 2.2
LYM 11 1 12254. 4 A 91.0 31 4.40E01 1.1 LYM44 11882. 1 L 1.20 9 9.64E01 0.7
LYM 11 9 12461. 4 A 91.1 97 4.58E01 1.3 LYM20 8 13012. 5 L 1.20 6 9.83E01 0.4
LYM21 11673. 1 A 91.3 87 4.60E01 1.5 CONTR OL L 1.20 1 0
LYM 14 0 12262. 3 A 91.3 89 4.61E01 1.5 LYM 13 8 12561. 1 M 0.33 8 0.00E +00 124.8
LYM 14 8 12174. 2 A 91.6 62 4.77E01 1.8 LYM 17 4 12414. 3 M 0.25 9 1.50E05 72.8
LYM 11 1 12254. 3 A 91.1 61 4.82E01 1.2 LYM 13 8 12561. 3 M 0.25 8 2.00E05 71.7
LYM 13 8 12564. 1 A 91.5 67 4.91E01 1.7 LYM 11 9 12461. 4 M 0.25 2 4.40E05 67.8
LYM 19 11754. 1 A 90.5 86 5.02E01 0.6 LYM 11 9 12461. 1 M 0.24 7 1.02E04 64.7
LYM 11 9 12462. 2 A 91.2 66 5.04E01 1.3 LYM 13 0 12332. 1 M 0.23 7 1.67E04 57.8
LYM 10 2 12222. 2 A 91.3 56 5.05E01 1.4 LYM 10 6 12142. 2 M 0.24 6 3.33E04 63.9
LYM 10 5 12297. 2 A 90.8 82 5.68E01 0.9 LYM 11 9 12463. 2 M 0.23 5 4.03E04 56.8
LYM 11 9 12461. 1 A 91.2 25 5.83E01 1.3 LYM22 0 12851. 8 M 0.23 5 5.61E04 56.5
LYM22 11764. 1 A 91.3 11 5.88E01 1.4 LYM 17 4 12411. 3 M 0.24 1 8.78E04 60.7
LYM22 11761. 3 A 90.6 21 6.14E01 0.6 LYM 17 4 12412. 1 M 0.22 9 1.48E03 52.4
279
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM11 3 12442. 1 A 90.8 93 6.16E01 0.9 LYM28 9 12493. 1 M 0.22 6 1.50E03 50.2
LYM13 4 12311. 2 A 90.8 68 6.23E01 0.9 LYM10 7 12632. 3 M 0.22 5 2.47E03 49.7
LYM12 9 12573. 3 A 91.7 22 6.45E01 1.8 LYM15 3 12323. 2 M 0.22 3 2.51E03 48.2
LYM17 4 12414. 3 A 90.6 25 6.59E01 0.6 LYM15 3 12324. 1 M 0.22 5 2.61E03 49.7
LYM10 11742. 1 A 90.4 22 6.74E01 0.4 LYM11 9 12462. 1 M 0.22 2 5.10E03 48.1
LYM1 11601. 1 A 90.9 06 6.83E01 0.9 LYM28 8 12743. 9 M 0.21 3 5.72E03 41.9
LYM29 0 12501. 3 A 90.3 9 6.87E01 0.4 LYM25 5 13082. 5 M 0.22 8 5.79E03 52
LYM14 0 12261. 2 A 91.2 22 6.93E01 1.3 LYM25 5 13082. 8 M 0.21 1 7.22E03 40.4
LYM3 12041. 1 A 91.5 83 6.94E01 1.7 LYM28 8 12743. 5 M 0.21 8 8.60E03 45.3
LYM15 3 12321. 2 A 90.6 16 7.11E01 0.6 LYM25 5 13082. 7 M 0.21 5 1.08E02 43.1
LYM14 8 12174. 1 A 90.5 92 7.15E01 0.6 LYM15 3 12324. 2 M 0.20 8 1.28E02 38.3
LYM10 2 12221. 1 A 90.4 66 7.40E01 0.4 LYM11 9 12462. 2 M 0.21 3 1.33E02 42
LYM14 0 12261. 4 A 90.8 37 7.42E01 0.9 LYM10 2 12222. 2 M 0.20 5 1.38E02 36.7
LYM16 2 12234. 3 A 90.9 09 7.49E01 0.9 LYM15 2 12371. 2 M 0.21 7 1.45E02 44.2
LYM13 2 12271. 4 A 90.2 98 7.84E01 0.3 LYM10 5 12293. 1 M 0.20 6 1.48E02 37.1
LYM12 9 12572. 2 A 90.9 07 7.96E01 0.9 LYM13 7 12151. 4 M 0.20 3 1.60E02 35.3
LYM10 0 12134. 1 A 90.8 09 8.05E01 0.8 LYM17 4 12411. 2 M 0.20 6 1.70E02 37.4
LYM19 11753. 1 A 90.3 1 8.11E01 0.3 LYM28 9 12493. 2 M 0.21 4 1.88E02 42.8
LYM28 9 12493. 2 A 90.5 91 8.24E01 0.6 LYM10 6 12144. 4 M 0.19 9 2.45E02 32.2
LYM10 2 12222. 6 A 90.7 69 8.26E01 0.8 LYM10 5 12295. 2 M 0.19 9 2.68E02 32.7
LYM10 11742. 2 A 90.5 07 8.27E01 0.5 LYM10 5 12297. 2 M 0.19 9 2.80E02 32.4
LYM9 11632. 1 A 90.2 31 8.32E01 0.2 LYM13 0 12332. 2 M 0.19 8 2.81E02 31.9
LYM11 3 12444. 5 A 90.2 43 8.32E01 0.2 LYM13 0 12334. 1 M 0.19 6 2.87E02 30.7
LYM10 2 12222. 1 A 90.9 68 8.39E01 1 LYM27 0 12873. 6 M 0.19 5 4.30E02 29.7
LYM1 11604. 4 A 90.5 74 8.76E01 0.6 LYM11 1 12252. 2 M 0.19 5 4.53E02 29.8
LYM3 12043. 2 A 90.7 01 8.80E01 0.7 LYM15 3 12321. 2 M 0.19 6 4.59E02 30.4
280
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 5 12294. 3 A 90.2 28 8.91E01 0.2 LYM13 7 12151. 1 M 0.19 3 4.97E02 28.8
LYM15 3 12324. 1 A 90.3 08 8.94E01 0.3 LYM13 7 12151. 2 M 0.19 3 6.15E02 28.5
LYM15 11614. 4 A 90.1 58 9.00E01 0.1 LYM10 5 12294. 2 M 0.18 8 7.39E02 25.1
LYM13 11772. 2 A 90.2 6 9.44E01 0.2 LYM10 6 12144. 3 M 0.19 1 7.99E02 27.4
LYM28 9 12492. 2 A 90.2 34 9.48E01 0.2 LYM13 8 12562. 2 M 0.18 9 8.00E02 25.7
LYM16 2 12231. 1 A 90.1 45 9.78E01 0.1 LYM29 1 12754. 9 M 0.19 8.85E02 26.8
CONTR OL A 90.0 61 0 LYM13 0 12331. 3 M 0.19 8 9.07E02 31.9
LYM13 11771. 6 B 0.27 2 1.17E02 23.1 LYM10 7 12631. 4 M 0.18 2 1.23E01 21.4
LYM12 9 12573. 3 B 0.28 8 2.16E02 30.2 LYM13 7 12154. 5 M 0.19 2 1.33E01 27.8
LYM12 9 12573. 5 B 0.36 4 2.30E02 65 LYM15 3 12322. 1 M 0.18 1 1.40E01 20.6
LYM4 11702. 3 B 0.27 3.35E02 22.3 LYM14 3 12524. 7 M 0.18 8 1.44E01 25.2
LYM4 11701. 1 B 0.25 9 4.26E02 17.5 LYM28 9 12492. 2 M 0.18 1.47E01 20.1
LYM15 2 12373. 2 B 0.37 6 4.78E02 70.4 LYM10 2 12222. 3 M 0.18 1.55E01 19.8
LYM19 11752. 2 B 0.25 5 5.74E02 15.5 LYM28 8 12741. 9 M 0.18 1 1.68E01 20.8
LYM15 11611. 3 B 0.25 5 6.26E02 15.5 LYM17 3 12981. 6 M 0.17 8 1.71E01 18.8
LYM13 8 12561. 1 B 0.26 1 6.50E02 18.3 LYM13 7 12153. 1 M 0.17 8 1.79E01 18.8
LYM17 11682. 1 B 0.32 4 6.56E02 46.9 LYM13 8 12564. 1 M 0.17 9 1.94E01 19.2
LYM17 11683. 1 B 0.26 6 6.67E02 20.3 LYM90 12395. 3 M 0.17 8 1.97E01 18.6
LYM13 0 12333. 1 B 0.25 4 7.69E02 15.2 LYM15 2 12371. 3 M 0.18 2.02E01 19.8
LYM9 11633. 7 B 0.30 1 9.51E02 36.4 LYM21 2 13032. 8 M 0.17 6 2.12E01 17.3
LYM14 8 12171. 2 B 0.28 1 1.01E01 27.4 LYM28 8 12743. 8 M 0.17 6 2.21E01 17.4
LYM4 11706. 3 B 0.31 6 1.05E01 43.2 LYM11 1 12254. 4 M 0.17 5 2.43E01 16.2
LYM4 11705. 2 B 0.31 6 1.25E01 43.1 LYM19 7 12821. 6 M 0.17 3 2.76E01 15.1
LYM9 11632. 2 B 0.33 9 1.56E01 53.4 LYM24 2 13051. 8 M 0.17 2 3.06E01 14.6
LYM2 11691. 2 B 0.24 4 1.73E01 10.4 LYM24 2 13052. 5 M 0.17 1 3.18E01 14.1
LYM16 2 12234. 4 B 0.29 9 2.06E01 35.3 LYM10 6 12141. 4 M 0.16 9 3.53E01 12.8
281
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM14 8 12174. 1 B 0.31 5 2.13E01 42.7 LYM15 2 12373. 1 M 0.16 9 3.59E01 12.7
LYM28 9 12493. 2 B 0.27 1 2.20E01 22.9 LYM10 7 12631. 2 M 0.16 9 3.69E01 12.9
LYM9 11634. 5 B 0.26 2.39E01 17.8 LYM10 7 12631. 1 M 0.16 9 3.80E01 12.7
LYM12 9 12571. 3 B 0.24 9 2.41E01 12.7 LYM10 2 12221. 1 M 0.16 9 3.82E01 12.4
LYM15 3 12323. 2 B 0.25 9 2.51E01 17.2 LYM18 3 12994. 8 M 0.17 3 3.83E01 15.3
LYM11 9 12463. 2 B 0.43 3 2.58E01 95.9 LYM10 5 12294. 3 M 0.16 5 4.64E01 10
LYM13 0 12331. 3 B 0.23 9 2.71E01 8.1 LYM17 3 12981. 5 M 0.16 5 4.93E01 9.9
LYM19 11751. 5 B 0.24 3 2.73E01 9.8 LYM28 9 12491. 4 M 0.16 4 5.04E01 9.2
LYM15 11612. 3 B 0.28 9 2.83E01 31.1 LYM10 2 12222. 1 M 0.16 4 5.15E01 9.1
LYM21 11672. 4 B 0.25 2 2.88E01 14.1 LYM25 5 13082. 9 M 0.16 4 5.16E01 9.4
LYM16 11624. 4 B 0.25 1 3.28E01 13.5 LYM14 3 12524. 5 M 0.16 7 5.26E01 11.1
LYM12 9 12572. 4 B 0.31 6 3.30E01 43 LYM28 9 12491. 1 M 0.16 3 5.32E01 8.6
LYM11 3 12442. 1 B 0.32 6 3.53E01 47.8 LYM14 2 12802. 9 M 0.16 4 5.37E01 9.5
LYM4 11706. 5 B 0.29 6 3.55E01 33.9 LYM10 0 12131. 3 M 0.16 2 5.51E01 8.2
LYM13 2 12275. 1 B 0.28 9 3.63E01 30.8 LYM10 2 12222. 6 M 0.16 3 5.63E01 8.5
LYM12 9 12572. 2 B 0.30 3 3.87E01 37.3 LYM28 7 12774. 6 M 0.16 6.30E01 6.7
LYM13 11773. 2 B 0.31 4 3.98E01 42.1 LYM13 0 12333. 1 M 0.15 9 6.78E01 6
LYM14 3 12521. 2 B 0.26 4 4.18E01 19.7 LYM19 8 13005. 8 M 0.15 8 6.94E01 5.4
LYM14 3 12523. 4 B 0.27 4 4.27E01 24.3 LYM18 3 12993. 7 M 0.15 9 7.00E01 5.7
LYM11 3 12441. 4 B 0.27 8 4.50E01 25.7 LYM10 6 12142. 3 M 0.15 8 7.00E01 5.3
LYM10 6 12141. 4 B 0.25 4 4.54E01 15.1 LYM18 3 12994. 7 M 0.15 8 7.06E01 5.3
LYM13 11772. 1 B 0.27 4.61E01 22.3 LYM20 1 12834. 6 M 0.15 8 7.14E01 5
LYM9 11632. 1 B 0.31 9 4.74E01 44.4 LYM29 1 12753. 6 M 0.15 8 7.29E01 5.1
LYM11 1 12254. 3 B 0.33 5 4.82E01 51.7 LYM28 7 12771. 6 M 0.15 7 7.30E01 4.7
LYM15 3 12324. 2 B 0.30 4 4.85E01 37.6 LYM28 7 12773. 7 M 0.15 8 7.39E01 5.1
LYM10 6 12144. 4 B 0.23 3 4.92E01 5.6 LYM21 2 13031. 6 M 0.15 7 7.40E01 4.4
282
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM1 11602. 1 B 0.23 6 4.95E01 6.7 LYM27 0 12871. 5 M 0.15 9 7.48E01 5.7
LYM13 0 12332. 2 B 0.23 2 4.98E01 5 LYM44 11885. 4 M 0.15 7 7.56E01 4.4
LYM2 11695. 3 B 0.25 1 5.12E01 13.5 LYM21 2 13034. 9 M 0.15 8 7.63E01 5.5
LYM14 1 12404. 1 B 0.27 8 5.13E01 25.7 LYM10 7 12632. 1 M 0.15 6 7.80E01 4
LYM14 1 12402. 4 B 0.24 3 5.22E01 10.1 LYM17 3 12982. 6 M 0.15 4 8.61E01 2.4
LYM16 11624. 6 B 0.29 1 5.38E01 31.9 LYM20 1 12833. 7 M 0.15 3 8.72E01 2.2
LYM13 4 12311. 2 B 0.28 9 5.54E01 31.1 LYM44 11882. 1 M 0.15 1 9.64E01 0.7
LYM11 1 12251. 1 B 0.33 8 5.57E01 53.1 LYM20 8 13012. 5 M 0.15 1 9.83E01 0.4
LYM14 1 12404. 4 B 0.26 1 5.64E01 18 CONTR OL M 0.15 0
LYM17 11684. 4 B 0.23 5.76E01 4.2 LYM13 8 12561. 1 N 0.26 1 1.30E05 49
LYM10 6 12142. 1 B 0.29 3 5.87E01 32.8 LYM28 9 12493. 1 N 0.23 4 7.05E04 33.6
LYM13 4 12314. 2 B 0.24 1 6.43E01 9.3 LYM17 4 12414. 3 N 0.22 9 2.54E03 30.8
LYM10 0 12131. 3 B 0.25 1 6.43E01 13.8 LYM11 9 12461. 1 N 0.22 7 3.16E03 29.7
LYM10 11742. 1 B 0.26 7 6.69E01 20.9 LYM13 8 12561. 3 N 0.22 5 3.66E03 28.5
LYM11 1 12251. 3 B 0.23 9 6.76E01 8.4 LYM11 9 12461. 4 N 0.22 4 5.01E03 27.8
LYM11 1 12252. 2 B 0.22 9 6.87E01 3.9 LYM17 4 12411. 3 N 0.22 5 7.02E03 28.9
LYM16 11623. 5 B 0.25 9 6.97E01 17.2 LYM10 6 12142. 2 N 0.22 6 8.45E03 29.3
LYM10 6 12142. 2 B 0.23 3 6.99E01 5.6 LYM15 3 12323. 2 N 0.21 6 1.61E02 23.5
LYM14 8 12173. 1 B 0.22 9 7.02E01 3.6 LYM15 3 12324. 1 N 0.21 7 1.92E02 23.8
LYM15 2 12373. 1 B 0.22 9 7.02E01 3.9 LYM11 9 12463. 2 N 0.21 2 3.04E02 21
LYM13 4 12312. 3 B 0.24 5 7.07E01 11 LYM22 0 12851. 8 N 0.21 2 3.13E02 21.2
LYM29 0 12504. 1 B 0.28 3 7.08E01 28 LYM28 9 12493. 2 N 0.21 7 3.21E02 24.2
LYM16 11623. 2 B 0.25 7.31E01 13.2 LYM17 4 12412. 1 N 0.21 4 3.22E02 22.5
LYM2 11695. 1 B 0.27 7 7.60E01 25.4 LYM13 7 12151. 4 N 0.20 8 4.03E02 19.1
LYM16 2 12231. 1 B 0.23 5 7.79E01 6.4 LYM28 8 12743. 5 N 0.21 3 4.24E02 21.5
LYM2 11692. 3 B 0.25 1 7.87E01 13.5 LYM10 5 12295. 2 N 0.21 4.60E02 19.9
283
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM11 3 12443. 1 B 0.26 1 7.97E01 18 LYM25 5 13082. 8 N 0.21 5.20E02 20.1
LYM15 2 12372. 2 B 0.23 5 8.07E01 6.4 LYM11 9 12462. 1 N 0.21 1 5.82E02 20.8
LYM14 3 12521. 1 B 0.22 6 8.11E- 01 2.5 LYM13 0 12332. 1 N 0.20 7 5.93E02 18.4
LYM13 0 12334. 1 B 0.25 9 8.16E- 01 17.2 LYM10 7 12632. 3 N 0.20 7 6.68E02 18.4
LYM15 3 12324. 1 B 0.24 4 8.17E- 01 10.7 LYM15 3 12324. 2 N 0.20 4 7.50E02 16.6
LYM13 7 12154. 5 B 0.22 6 8.28E01 2.2 LYM11 9 12462. 2 N 0.20 8 7.54E02 19
LYM15 11614. 4 B 0.23 3 8.31E- 01 5.3 LYM10 5 12293. 1 N 0.20 5 7.59E02 17.3
LYM16 11622. 2 B 0.23 3 8.34E01 5.6 LYM15 2 12371. 3 N 0.20 5 7.65E02 17.4
LYM28 9 12493. 6 B 0.24 9 8.38E01 12.7 LYM25 5 13082. 7 N 0.20 7 8.60E02 18.1
LYM1 11604. 4 B 0.23 4 8.63E01 6.2 LYM11 1 12252. 2 N 0.20 3 9.29E02 16.2
LYM28 9 12491. 1 B 0.23 5 8.75E01 6.4 LYM10 2 12222. 2 N 0.20 2 1.09E- 01 15.6
LYM21 11673. 1 B 0.22 6 8.75E01 2.5 LYM25 5 13082. 5 N 0.20 7 1.17E- 01 18.2
LYM13 2 12271. 4 B 0.22 9 9.38E01 3.6 LYM13 7 12151. 2 N 0.20 4 1.18E- 01 16.5
LYM1 11603. 2 B 0.22 2 9.68E01 0.5 LYM10 6 12144. 4 N 0.19 9 1.21E- 01 14
LYM13 8 12561. 3 B 0.22 3 9.70E01 0.8 LYM14 3 12524. 7 N 0.20 4 1.42E- 01 16.6
LYM15 2 12371. 2 B 0.22 1 9.92E01 0.2 LYM28 8 12743. 9 N 0.19 8 1.48E- 01 13.3
CONTR OL B 0.22 1 0 LYM15 3 12321. 2 N 0.19 8 1.63E- 01 13.4
LYM9 11632. 2 C 3.26 9 4.30E05 64 LYM15 2 12371. 2 N 0.20 4 1.67E- 01 16.5
LYM4 11705. 2 C 2.99 3 1.48E- 04 50.1 LYM10 5 12294. 2 N 0.19 6 1.85E- 01 11.8
LYM17 11682. 1 C 2.73 1 8.43E04 37 LYM15 3 12322. 1 N 0.19 6 1.90E- 01 11.8
LYM4 11706. 3 C 3.39 4 2.46E03 70.2 LYM10 5 12297. 2 N 0.19 6 1.90E- 01 11.9
LYM12 9 12573. 3 C 3.10 6 2.83E03 55.8 LYM13 7 12151. 1 N 0.19 6 2.05E01 11.8
LYM13 0 12333. 1 C 2.68 1 3.58E03 34.5 LYM14 2 12804. 1 N 0.19 8 2.08E01 13.3
LYM4 11702. 3 C 3.1 4.05E03 55.5 LYM15 2 12373. 1 N 0.19 6 2.17E01 11.8
LYM13 8 12561. 1 C 2.53 1 5.20E03 27 LYM17 4 12411. 2 N 0.19 6 2.21E01 12.1
LYM13 11771. 6 C 2.75 6 6.82E03 38.3 LYM19 7 12821. 6 N 0.19 4 2.27E01 10.6
284
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM15 11612. 3 C 2.49 4 7.56E03 25.1 LYM13 0 12334. 1 N 0.19 3 2.39E01 10.3
LYM9 11634. 5 c 2.63 1 1.39E02 32 LYM10 2 12222. 3 N 0.19 3 2.51E01 10.3
LYM12 9 12573. 5 c 3.51 9 1.43E02 76.5 LYM13 0 12332. 2 N 0.19 1 3.09E01 9.2
LYM17 11683. 1 c 2.39 4 2.12E02 20.1 LYM29 1 12754. 9 N 0.19 4 3.10E01 10.7
LYM12 9 12571. 3 c 2.76 3 2.21E02 38.6 LYM10 6 12144. 3 N 0.19 2 3.17E01 9.9
LYM10 6 12144. 4 c 2.40 6 2.27E02 20.7 LYM27 0 12873. 6 N 0.19 3.42E01 8.7
LYM19 11751. 5 c 2.35 6 3.15E02 18.2 LYM10 2 12222. 1 N 0.19 3.58E01 8.6
LYM4 11701. 1 c 2.84 4 3.92E02 42.6 LYM10 2 12221. 1 N 0.18 8 3.97E01 7.6
LYM11 3 12441. 4 c 2.64 4 4.19E02 32.6 LYM13 7 12153. 1 N 0.18 8 3.97E01 7.7
LYM17 11684. 4 c 2.35 6 5.63E02 18.2 LYM17 3 12981. 6 N 0.18 8 3.98E01 7.7
LYM12 9 12572. 4 c 3.03 8 5.70E02 52.4 LYM90 12395. 3 N 0.18 9 4.04E01 8.2
LYM15 11611. 3 c 2.3 5.79E02 15.4 LYM10 7 12631. 2 N 0.18 9 4.08E01 8.1
LYM11 9 12463. 2 c 3.41 9 8.18E02 71.5 LYM44 11882. 1 N 0.18 8 4.49E01 7.4
LYM1 11602. 1 c 2.28 1 8.53E02 14.4 LYM17 3 12981. 5 N 0.18 7 4.84E01 6.6
LYM14 8 12171. 2 c 2.37 5 1.08E01 19.1 LYM14 3 12524. 5 N 0.18 9 5.07E01 7.9
LYM15 2 12373. 2 c 2.77 5 1.08E01 39.2 LYM24 2 13052. 5 N 0.18 6 5.08E01 6.2
LYM4 11706. 5 c 3.06 9 1.20E01 53.9 LYM13 0 12331. 3 N 0.18 9 5.20E01 8.2
LYM9 11633. 7 c 3.06 3 1.26E01 53.6 LYM28 8 12743. 8 N 0.18 5 5.30E01 6
LYM10 6 12144. 3 c 2.24 4 1.58E01 12.6 LYM13 8 12564. 1 N 0.18 5 5.54E01 5.8
LYM14 1 12402. 4 c 2.38 1 1.63E01 19.4 LYM28 9 12492. 2 N 0.18 4 5.60E01 5.3
LYM16 11624. 4 c 2.42 5 1.90E01 21.6 LYM13 7 12154. 5 N 0.18 6 5.68E01 6.4
LYM13 11773. 2 c 2.61 9 1.93E01 31.4 LYM13 8 12562. 2 N 0.18 3 6.21E01 4.8
LYM10 6 12142. 2 c 2.3 1.99E01 15.4 LYM28 9 12491. 4 N 0.18 2 6.68E01 3.8
LYM13 7 12154. 5 c 2.3 1.99E01 15.4 LYM10 6 12141. 4 N 0.18 1 6.80E01 3.6
LYM13 2 12275. 1 c 2.27 5 2.02E01 14.1 LYM18 3 12994. 7 N 0.18 1 6.90E01 3.7
LYM15 3 12323. 2 c 2.48 1 2.07E01 24.5 LYM10 7 12631. 4 N 0.18 1 6.97E01 3.5
285
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11633. 2 C 2.35 6 2.33E01 18.2 LYM28 9 12491. 1 N 0.18 7.34E01 3
LYM13 4 12314. 2 c 2.28 8 2.41E01 14.7 LYM27 0 12871. 8 N 0.18 1 7.36E01 3.7
LYM12 9 12572. 2 c 3 2.69E01 50.5 LYM14 2 12804. 3 N 0.18 1 7.40E01 3.7
LYM13 4 12312. 3 c 2.2 2.70E01 10.4 LYM24 2 13051. 8 N 0.18 7.41E- 01 3
LYM11 3 12442. 1 c 2.68 1 2.75E01 34.5 LYM44 11885. 3 N 0.18 1 7.62E01 3.2
LYM13 11772. 1 c 2.48 1 2.80E01 24.5 LYM18 3 12994. 8 N 0.18 1 7.66E01 3.7
LYM14 8 12173. 1 c 2.15 2.91E01 7.8 LYM10 6 12142. 3 N 0.17 9 7.88E01 2.4
LYM11 9 12461. 1 c 2.28 8 2.95E01 14.7 LYM11 1 12254. 4 N 0.17 9 7.89E01 2.4
LYM13 11771. 9 c 2.19 4 2.97E01 10 LYM10 7 12631. 1 N 0.17 9 7.99E01 2.4
LYM14 1 12404. 1 c 2.44 4 3.06E01 22.6 LYM20 1 12834. 6 N 0.17 9 8.18E- 01 2.2
LYM16 11624. 6 c 2.68 8 3.41E- 01 34.8 LYM10 0 12131. 3 N 0.17 8 8.46E01 1.7
LYM14 8 12174. 1 c 2.42 5 3.45E01 21.6 LYM21 2 13032. 8 N 0.17 8 8.59E01 1.6
LYM16 11622. 2 c 2.19 4 3.53E01 10 LYM20 1 12833. 9 N 0.17 7 8.96E01 1.1
LYM9 11632. 1 c 3.00 6 3.58E01 50.8 LYM27 0 12871. 5 N 0.17 8 9.11E01 1.5
LYM13 0 12331. 3 c 2.21 9 3.60E01 11.3 LYM10 5 12294. 3 N 0.17 7 9.14E01 1
LYM15 3 12324. 2 c 2.46 9 3.65E01 23.8 LYM10 7 12632. 1 N 0.17 7 9.15E01 1
LYM16 11623. 2 c 2.41 3 3.71E- 01 21 LYM20 1 12833. 7 N 0.17 6 9.24E01 0.8
LYM16 2 12234. 4 c 2.5 3.76E01 25.4 LYM13 7 12152. 1 N 0.17 6 9.43E01 0.7
LYM11 1 12254. 3 c 2.58 1 4.18E01 29.5 LYM20 8 13012. 5 N 0.17 6 9.69E01 0.5
LYM11 1 12251. 1 c 2.68 8 4.40E01 34.8 LYM19 7 12824. 4 N 0.17 6 9.72E01 0.3
LYM17 11681. 4 c 2.11 5 4.53E01 6.1 LYM28 8 12744. 6 N 0.17 6 9.74E01 0.4
LYM15 11614. 4 c 2.12 5 4.67E01 6.6 CONTR OL N 0.17 5 0
LYM10 6 12142. 1 c 2.53 1 4.74E01 27 LYM17 4 12414. 3 O 2.09 4 1.00E- 06 72.1
LYM10 6 12141. 4 c 2.35 8 4.96E01 18.3 LYM28 8 12743. 9 O 1.73 3.30E05 42.2
LYM14 3 12521. 2 c 2.18 1 5.05E01 9.4 LYM25 5 13082. 8 o 1.71 2 4.70E05 40.7
LYM19 11752. 2 c 2.08 1 5.38E01 4.4 LYM10 6 12144. 4 o 1.62 4 2.04E04 33.5
286
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM16 2 12231. 3 C 2.10 6 5.41E01 5.7 LYM27 0 12873. 6 O 1.58 7 4.90E04 30.4
LYM11 1 12251. 3 c 2.35 5.87E01 17.9 LYM28 9 12492. 2 o 1.51 8 1.30E03 24.7
LYM14 1 12404. 4 c 2.16 9 6.33E01 8.8 LYM10 5 12294. 2 o 1.49 6 1.87E03 22.9
LYM13 7 12151. 2 c 2.05 8 6.54E01 3.2 LYM10 7 12631. 4 o 1.48 7 2.26E03 22.2
LYM11 1 12254. 4 c 2.18 1 6.62E01 9.4 LYM13 0 12332. 1 o 1.92 8 3.71E03 58.5
LYM16 11623. 5 c 2.28 1 6.77E01 14.4 LYM15 3 12323. 2 o 1.82 8 4.86E03 50.3
LYM15 3 12324. 1 c 2.18 1 6.83E01 9.4 LYM13 0 12334. 1 o 1.57 8 5.52E03 29.7
LYM13 8 12561. 3 c 2.17 5 6.87E01 9.1 LYM13 7 12153. 1 o 1.43 5 7.32E03 17.9
LYM2 11695. 3 c 2.05 6.93E01 2.8 LYM15 3 12324. 2 o 1.68 9 7.63E03 38.9
LYM13 7 12151. 1 c 2.05 7.06E01 2.8 LYM17 3 12981. 6 o 1.46 3 8.10E03 20.2
LYM14 3 12523. 4 c 2.15 6 7.37E01 8.2 LYM13 8 12561. 1 o 2.72 6 8.93E03 124.1
LYM2 11695. 1 c 2.5 7.66E01 25.4 LYM15 3 12322. 1 o 1.43 2 9.89E03 17.7
LYM2 11691. 2 c 2.07 5 7.88E01 4.1 LYM28 9 12493. 1 o 1.81 8 1.07E02 49.5
LYM21 11672. 4 c 2.03 1 7.89E01 1.9 LYM11 9 12461. 4 o 2.03 1.16E02 66.9
LYM13 7 12152. 1 c 2.06 3 7.91E01 3.5 LYM10 2 12222. 2 o 1.67 6 1.46E02 37.7
LYM13 0 12332. 2 c 2.03 1 8.44E01 1.9 LYM10 2 12222. 3 o 1.45 5 1.94E02 19.6
LYM16 2 12231. 1 c 2.12 5 8.45E01 6.6 LYM10 5 12297. 2 o 1.59 8 2.07E02 31.3
LYM13 4 12311. 2 c 2.08 1 8.49E01 4.4 LYM10 7 12631. 2 o 1.38 6 2.27E02 14
LYM29 0 12504. 1 c 2.15 8.69E01 7.8 LYM13 8 12561. 3 o 2.06 6 3.41E02 69.8
LYM16 2 12234. 3 c 2.03 1 9.11E01 1.9 LYM11 9 12461. 1 o 1.94 8 6.22E02 60.1
LYM13 7 12153. 1 c 2.01 3 9.23E01 1 LYM10 5 12293. 1 o 1.69 5 6.63E02 39.3
LYM15 2 12373. 1 c 2.00 6 9.33E01 0.6 LYM10 6 12141. 4 o 1.38 8 7.61E02 14.1
LYM15 2 12371. 2 c 2 9.69E01 0.3 LYM21 2 13032. 8 o 1.44 9 7.79E02 19.1
LYM10 11742. 1 c 2.01 3 9.70E01 1 LYM11 9 12463. 2 o 1.91 7 8.15E02 57.6
LYM17 11684. 5 c 2.00 6 9.72E01 0.6 LYM10 5 12295. 2 o 1.60 7 8.74E02 32.1
LYM28 9 12491. 1 c 2 9.93E01 0.3 LYM17 3 12982. 6 o 1.33 2 8.92E02 9.5
287
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
CONTR OL C 1.99 4 0 LYM 11 1 12254. 4 O 1.43 9.17E02 17.6
LYM 14 8 12171. 2 D 0.36 2 3.00E06 59.2 LYM 17 4 12411. 2 o 1.72 4 1.04E01 41.7
LYM 14 3 12524. 7 D 0.34 4 1.40E05 51.3 LYM22 0 12851. 8 o 1.88 6 1.22E01 55
LYM1 11602. 1 D 0.31 3 8.90E05 37.7 LYM 10 5 12294. 3 o 1.35 6 1.28E01 11.4
LYM 13 0 12333. 1 D 0.30 9 1.24E04 36 LYM 13 7 12151. 4 o 1.63 3 1.38E01 34.2
LYM 10 11744. 1 D 0.30 1 2.98E04 32.6 LYM 17 4 12412. 1 o 1.84 7 1.64E01 51.8
LYM 10 11741. 2 D 0.38 2 3.43E04 67.9 LYM 10 6 12142. 2 o 1.98 4 1.65E01 63.1
LYM 16 2 12234. 3 D 0.29 9 4.64E04 31.4 LYM 13 0 12332. 2 o 1.61 5 1.74E01 32.8
LYM 10 2 12222. 2 D 0.29 2 6.30E04 28.6 LYM24 2 13051. 8 o 1.41 5 1.75E01 16.3
LYM 15 11614. 3 D 0.29 1 7.21E04 28 LYM 10 7 12632. 3 o 1.84 6 1.82E01 51.7
LYM 14 0 12262. 3 D 0.29 7.39E04 27.5 LYM 15 2 12373. 1 o 1.37 8 2.05E01 13.2
LYM4 11706. 5 D 0.28 9 8.21E04 27 LYM 13 7 12151. 1 o 1.58 2 2.07E01 30
LYM 10 5 12293. 1 D 0.29 8 8.36E04 31 LYM 15 3 12324. 1 o 1.77 5 2.09E01 45.9
LYM1 11602. 6 D 0.40 6 1.24E03 78.7 LYM 11 9 12462. 1 o 1.85 1 2.26E01 52.1
LYM 15 2 12372. 2 D 0.28 6 1.76E03 26 LYM 13 8 12562. 2 o 1.51 2 2.27E01 24.3
LYM 13 2 12273. 2 D 0.28 3 1.88E03 24.6 LYM28 9 12491. 1 o 1.32 8 2.38E01 9.1
LYM 13 2 12271. 4 D 0.27 5 3.78E03 20.8 LYM 17 4 12411. 3 o 1.94 2 2.45E01 59.6
LYM 17 11684. 4 D 0.27 1 1.10E02 19.2 LYM 13 7 12151. 2 o 1.58 7 2.45E01 30.4
LYM 11 9 12461. 4 D 0.27 3 1.11E02 20 LYM 11 1 12252. 2 o 1.54 6 2.55E01 27.1
LYM 16 2 12231. 3 D 0.27 8 1.15E02 22.4 LYM28 8 12743. 8 o 1.46 4 2.62E01 20.4
LYM 13 11771. 6 D 0.26 2 2.00E02 15.2 LYM28 7 12774. 6 o 1.30 3 2.70E01 7.1
LYM9 11632. 2 D 0.26 1 2.89E02 15 LYM28 8 12743. 5 o 1.78 2.75E01 46.3
LYM 11 9 12463. 2 D 0.28 5 4.01E02 25.5 LYM24 2 13052. 5 o 1.36 5 2.99E01 12.2
LYM 14 1 12404. 2 D 0.25 5 4.81E02 12.1 LYM 10 7 12631. 1 o 1.40 7 3.08E01 15.7
LYM 13 8 12561. 1 D 0.32 8 5.35E02 44.5 LYM 10 0 12131. 3 o 1.36 3.20E01 11.7
LYM 19 11751. 5 D 0.29 1 5.76E02 28 LYM28 9 12491. 4 o 1.32 2 3.20E01 8.7
288
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 19 11753. 1 D 0.27 4 6.46E02 20.5 LYM90 12395. 3 O 1.44 3 3.34E01 18.6
LYM28 9 12493. 6 D 0.25 3 7.62E02 11.2 LYM 10 2 12222. 1 o 1.33 9 3.34E01 10.1
LYM26 8 12483. 2 D 0.25 6 7.90E02 12.7 LYM 19 7 12821. 6 o 1.38 5 3.37E01 13.8
LYM 12 9 12573. 5 D 0.25 1 8.16E02 10.4 LYM25 5 13082. 7 o 1.71 1 3.37E01 40.7
LYM 14 8 12174. 1 D 0.30 3 8.57E02 33.3 LYM 11 9 12462. 2 o 1.68 8 3.41E01 38.8
LYM28 9 12493. 2 D 0.31 1.00E01 36.3 LYM 15 2 12371. 2 o 1.79 1 3.57E01 47.2
LYM9 11632. 1 D 0.34 4 1.06E01 51.2 LYM 15 3 12321. 2 o 1.54 5 3.58E01 27
LYM1 11604. 4 D 0.32 1 1.12E01 41.4 LYM28 7 12771. 6 o 1.28 4 3.68E01 5.5
LYM 10 11742. 2 D 0.30 3 1.26E01 33.2 LYM28 9 12493. 2 o 1.75 2 3.69E01 44
LYM1 11603. 2 D 0.28 1.48E01 23 LYM 10 6 12144. 3 o 1.54 4 3.75E01 26.9
LYM 11 9 12462. 2 D 0.36 1 1.51E01 58.8 LYM25 5 13082. 5 o 1.81 3.83E01 48.8
LYM 14 3 12521. 1 D 0.25 9 1.56E01 14.1 LYM28 8 12741. 9 o 1.47 9 4.12E01 21.6
LYM 17 11681. 4 D 0.24 9 1.61E01 9.6 LYM 13 8 12564. 1 o 1.45 2 4.26E01 19.3
LYM 13 11772. 1 D 0.24 8 1.66E01 9.1 LYM29 1 12754. 9 o 1.53 8 4.35E01 26.4
LYM 11 9 12462. 1 D 0.29 8 1.76E01 31.1 LYM 10 2 12221. 1 o 1.35 3 4.81E01 11.2
LYM 15 11612. 2 D 0.26 3 1.80E01 15.8 LYM 15 2 12371. 3 o 1.44 8 4.88E01 19
LYM 10 2 12221. 1 D 0.24 4 1.81E01 7.3 LYM25 5 13082. 9 o 1.35 6 5.04E01 11.5
LYM 17 4 12411. 2 D 0.30 4 1.83E01 33.9 LYM 13 0 12331. 3 o 1.58 9 5.44E01 30.6
LYM 16 11624. 4 D 0.24 4 1.94E01 7.2 LYM21 2 13031. 6 o 1.27 2 5.47E01 4.5
LYM21 11673. 1 D 0.26 1.96E01 14.4 LYM 14 3 12524. 7 o 1.49 2 5.72E01 22.7
LYM 17 11684. 5 D 0.24 2 2.39E01 6.4 LYM 17 3 12981. 5 o 1.33 1 5.74E01 9.4
LYM 13 8 12561. 3 D 0.32 1 2.41E01 41.1 LYM 10 6 12142. 3 o 1.26 7 5.74E01 4.2
LYM4 11705. 2 D 0.27 3 2.47E01 20.2 LYM 14 2 12802. 9 o 1.38 5.91E01 13.4
LYM 13 8 12562. 1 D 0.24 2 2.58E01 6.5 LYM 19 8 13005. 8 o 1.27 3 5.92E01 4.6
LYM 14 1 12404. 3 D 0.27 4 2.69E01 20.7 LYM 10 2 12222. 6 o 1.34 5 6.01E01 10.5
LYM 17 11683. 1 D 0.24 2 2.69E01 6.3 LYM 13 7 12154. 5 o 1.54 4 6.05E01 26.9
289
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 19 11754. 1 D 0.26 1 2.73E01 15 LYM20 1 12834. 6 O 1.28 7 7.03E01 5.8
LYM 15 2 12371. 2 D 0.27 1 2.75E01 19.3 LYM 18 3 12994. 8 o 1.41 4 7.10E- 01 16.2
LYM 13 0 12334. 1 D 0.24 5 2.83E01 7.7 LYM44 11885. 4 o 1.28 2 7.27E01 5.4
LYM 13 4 12311. 2 D 0.28 4 3.00E01 25 LYM24 2 13053. 7 o 1.26 2 7.36E01 3.7
LYM 14 1 12402. 4 D 0.29 6 3.09E01 30.2 LYM 10 7 12632. 1 o 1.28 9 7.44E01 5.9
LYM2 11692. 3 D 0.24 2 3.13E- 01 6.6 LYM29 1 12753. 6 o 1.29 2 7.51E- 01 6.2
LYM9 11633. 7 D 0.27 7 3.20E01 22 LYM 14 3 12524. 5 o 1.36 6 7.58E01 12.2
LYM 19 11751. 4 D 0.29 2 3.24E01 28.3 LYM20 1 12833. 7 o 1.24 1 7.73E01 2
LYM 16 2 12231. 1 D 0.27 9 3.32E01 22.6 LYM 13 0 12333. 1 o 1.29 4 7.92E01 6.4
LYM 14 8 12173. 1 D 0.28 9 3.33E01 27.2 LYM28 7 12773. 7 o 1.29 3 8.02E01 6.2
LYM 14 3 12524. 2 D 0.26 3 3.48E01 15.6 LYM 18 3 12993. 7 o 1.27 8 8.25E01 5
LYM 15 11612. 3 D 0.28 5 3.59E01 25.4 LYM27 0 12871. 5 o 1.29 2 8.85E01 6.2
LYM28 9 12491. 1 D 0.28 1 3.79E01 23.7 LYM 18 3 12994. 7 o 1.24 8.96E01 2
LYM 13 0 12332. 2 D 0.27 4 3.79E01 20.6 LYM21 2 13034. 9 o 1.27 9.25E01 4.4
LYM 17 4 12414. 3 D 0.31 3 3.80E01 37.5 LYM20 8 13012. 5 o 1.24 9 9.35E01 2.7
LYM 10 0 12133. 1 D 0.25 2 3.84E01 10.8 CONTR OL o 1.21 7 0
LYM 14 1 12404. 4 D 0.27 3.96E01 18.9 LYM28 9 12493. 1 P 2.45 7 6.00E06 34.4
LYM 16 2 12234. 4 D 0.30 7 4.01E01 35 LYM 15 3 12323. 2 P 2.34 8 3.90E05 28.5
LYM21 11671. 2 D 0.25 2 4.34E01 11.1 LYM 13 8 12561. 1 P 2.89 6 4.80E05 58.4
LYM 15 11611. 3 D 0.28 6 4.64E01 25.9 LYM28 8 12743. 9 P 2.27 8 1.08E- 04 24.6
LYM 10 11744. 5 D 0.26 3 4.65E01 15.5 LYM 10 6 12144. 4 P 2.16 2 1.09E- 03 18.3
LYM 17 4 12412. 1 D 0.28 3 4.68E01 24.5 LYM 13 0 12334. 1 P 2.12 3 1.12E- 03 16.2
LYM 17 4 12411. 3 D 0.25 9 4.73E01 13.9 LYM 10 5 12297. 2 P 2.12 3 1.13E03 16.1
LYM28 9 12491. 4 D 0.25 4.85E01 9.9 LYM 17 3 12981. 6 P 2.08 8 2.27E03 14.2
LYM 11 3 12442. 1 D 0.23 5 5.12E- 01 3.6 LYM 10 5 12293. 1 P 2.25 2 3.65E03 23.2
LYM 14 3 12521. 2 D 0.24 4 5.14E- 01 7.1 LYM 10 5 12294. 2 P 2.06 1 3.93E03 12.8
290
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 2 12222. 3 D 0.27 4 5.18E01 20.7 LYM 13 7 12153. 1 P 2.05 7 4.42E03 12.5
LYM 11 1 12251. 1 D 0.26 4 5.22E01 16.1 LYM 19 7 12821. 6 P 2.05 8 4.44E03 12.6
LYM 17 11682. 1 D 0.27 2 5.33E01 19.6 LYM 13 8 12561. 3 P 2.48 7 6.03E03 36.1
LYM26 8 12483. 4 D 0.25 8 5.50E01 13.3 LYM 10 7 12631. 4 P 2.03 4 7.95E03 11.3
LYM21 11672. 4 D 0.26 5 5.55E01 16.5 LYM 10 2 12222. 3 P 2.07 9 9.12E03 13.8
LYM29 0 12502. 4 D 0.25 5 6.03E01 12.4 LYM 11 1 12254. 4 P 2.01 3 1.74E02 10.1
LYM26 8 12482. 3 D 0.23 9 6.08E01 5.1 LYM 10 2 12222. 1 P 2.01 9 1.77E02 10.5
LYM29 0 12501. 3 D 0.24 2 6.70E01 6.6 LYM 10 6 12141. 4 P 1.99 9 1.86E02 9.4
LYM 10 5 12294. 2 D 0.26 3 7.15E01 15.6 LYM 11 9 12463. 2 P 2.42 7 2.00E02 32.8
LYM 10 0 12131. 3 D 0.24 6 7.22E01 8.2 LYM 15 3 12322. 1 P 2.02 5 2.34E02 10.8
LYM 11 1 12252. 2 D 0.25 2 7.44E01 10.7 LYM27 0 12873. 6 P 2.19 2.39E02 19.8
LYM1 11601. 1 D 0.24 1 7.48E01 6.1 LYM 10 2 12222. 2 P 2.26 2.62E02 23.6
LYM22 11762. 1 D 0.23 6 7.59E01 3.6 LYM 13 7 12151. 4 P 2.24 7 2.89E02 22.9
LYM 14 8 12172. 1 D 0.25 1 7.85E01 10.2 LYM 17 4 12414. 3 P 2.53 3 2.94E02 38.6
LYM26 8 12482. 1 D 0.24 3 8.20E01 6.9 LYM21 2 13032. 8 P 2.00 4 3.00E02 9.6
LYM 13 7 12153. 1 D 0.24 8.22E01 5.4 LYM 15 2 12373. 1 P 2.09 4 4.88E02 14.6
LYM 10 11742. 1 D 0.24 3 8.33E01 7.1 LYM 10 2 12221. 1 P 1.96 9 5.91E02 7.7
LYM 16 2 12233. 2 D 0.23 6 8.50E01 3.7 LYM 11 9 12461. 4 P 2.48 3 6.35E02 35.8
LYM 14 0 12261. 4 D 0.23 4 8.56E01 2.9 LYM 13 0 12332. 2 P 2.18 3 6.35E02 19.5
LYM29 0 12502. 1 D 0.23 4 8.96E01 3.1 LYM 15 3 12324. 2 P 2.20 7 6.58E02 20.7
LYM 14 3 12523. 4 D 0.23 2 9.21E01 1.9 LYM28 9 12492. 2 P 2.06 3 6.71E02 12.8
LYM9 11633. 2 D 0.23 9.45E01 1.4 LYM 17 3 12982. 6 P 1.94 4 7.81E02 6.4
LYM 11 1 12254. 4 D 0.22 8 9.48E01 0.3 LYM28 9 12493. 2 P 2.30 7 8.42E02 26.2
LYM 15 2 12373. 2 D 0.22 7 9.98E01 0 LYM 13 7 12151. 1 P 2.14 5 9.13E02 17.3
CONTR OL D 0.22 7 0 LYM22 0 12851. 8 P 2.29 4 9.18E02 25.5
LYM4 11706. 5 E 8.93 8 2.20E05 18.6 LYM 10 0 12131. 3 P 2.00 1 1.04E01 9.5
291
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 2 12222. 2 E 8.87 5 3.70E05 17.8 LYM13 0 12332. 1 P 2.43 7 1.12E01 33.4
LYM11 9 12462. 2 E 8.86 6 3.80E05 17.7 LYM11 9 12461. 1 P 2.38 3 1.15E01 30.4
LYM13 8 12561. 1 E 8.81 3 4.40E05 16.9 LYM24 2 13051. 8 P 2.01 1 1.19E- 01 10
LYM10 11742. 2 E 8.68 8 9.10E05 15.3 LYM28 8 12743. 5 P 2.29 9 1.24E01 25.8
LYM10 5 12293. 1 E 8.56 3 2.01E04 13.6 LYM10 6 12142. 2 P 2.41 1 1.25E01 31.9
LYM15 2 12372. 2 E 8.56 3 2.01E04 13.6 LYM10 5 12295. 2 P 2.24 3 1.29E- 01 22.7
LYM1 11602. 6 E 9.12 5 7.59E04 21.1 LYM10 5 12294. 3 P 1.95 3 1.30E01 6.9
LYM19 11753. 1 E 8.31 3 1.23E03 10.3 LYM10 7 12631. 2 P 2.02 2 1.32E01 10.7
LYM1 11603. 2 E 8.25 1.75E03 9.5 LYM15 3 12324. 1 P 2.30 9 1.37E- 01 26.3
LYM10 11744. 1 E 8.12 5 4.92E03 7.8 LYM17 4 12412. 1 P 2.35 9 1.38E01 29.1
LYM13 0 12333. 1 E 8.37 5 9.64E03 11.1 LYM17 4 12411. 2 P 2.25 8 1.41E01 23.5
LYM13 2 12271. 4 E 8.37 5 9.64E03 11.1 LYM24 2 13052. 5 P 2.00 2 1.43E01 9.5
LYM17 4 12414. 3 E 8.37 5 9.64E03 11.1 LYM10 7 12632. 3 P 2.32 6 1.47E- 01 27.2
LYM10 11741. 2 E 9.06 3 1.38E02 20.3 LYM10 6 12144. 3 P 2.13 1 1.69E- 01 16.6
LYM13 0 12332. 2 E 8.68 8 2.64E02 15.3 LYM17 4 12411. 3 P 2.45 8 1.72E- 01 34.5
LYM13 0 12334. 1 E 8.68 8 2.64E02 15.3 LYM21 2 13031. 6 P 1.96 9 1.78E- 01 7.7
LYM14 1 12402. 4 E 8.68 8 2.64E02 15.3 LYM15 2 12371. 3 P 2.06 1.86E01 12.7
LYM11 3 12442. 1 E 7.93 8 3.53E02 5.3 LYM25 5 13082. 8 P 2.31 2 2.00E01 26.5
LYM9 11632. 1 E 8.43 8 4.54E02 12 LYM15 3 12321. 2 P 2.11 2.02E01 15.4
LYM14 3 12524. 7 E 9 4.73E02 19.4 LYM11 9 12462. 1 P 2.41 8 2.08E01 32.3
LYM13 2 12275. 1 E 7.87 5 5.28E02 4.5 LYM24 2 13053. 7 P 1.91 4 2.14E01 4.7
LYM9 11633. 7 E 7.87 5 5.28E02 4.5 LYM28 8 12743. 8 P 2.07 2 2.20E01 13.4
LYM17 11681. 4 E 7.91 7 5.73E02 5.1 LYM28 9 12491. 1 P 1.95 9 2.38E01 7.2
LYM10 0 12133. 1 E 8.31 3 6.24E02 10.3 LYM11 1 12252. 2 P 2.14 8 2.40E01 17.5
LYM11 9 12461. 4 E 8.31 3 6.24E02 10.3 LYM25 5 13082. 9 P 1.99 8 2.41E01 9.3
LYM21 11672. 4 E 8 6.71E- 02 6.2 LYM11 9 12462. 2 P 2.21 8 2.61E01 21.3
292
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 11684. 4 E 8.18 8 8.91E02 8.6 LYM 13 7 12151. 2 P 2.21 2 2.66E01 21
LYM 19 11751. 5 E 8.18 8 8.91E02 8.6 LYM28 9 12491. 4 P 1.92 5 2.70E01 5.3
LYM 14 3 12524. 2 E 7.81 3 1.19E- 01 3.7 LYM 10 7 12631. 1 P 1.99 8 2.73E01 9.3
LYM 15 11614. 3 E 7.81 3 1.19E- 01 3.7 LYM 10 6 12142. 3 P 1.93 1 2.87E01 5.6
LYM 14 8 12171. 2 E 8.06 3 1.33E- 01 7 LYM 13 8 12562. 2 P 2.04 4 3.08E01 11.8
LYM 16 2 12231. 3 E 8.06 3 1.33E- 01 7 LYM25 5 13082. 5 P 2.27 3.12E- 01 24.2
LYM 19 11754. 1 E 8.06 3 1.33E- 01 7 LYM25 5 13082. 7 P 2.20 9 3.30E01 20.9
LYM 14 1 12404. 2 E 7.87 5 1.45E- 01 4.5 LYM 15 2 12371. 2 P 2.28 3 3.57E01 24.9
LYM28 9 12491. 4 E 7.87 5 1.45E- 01 4.5 LYM90 12395. 3 P 2.04 1 3.80E01 11.7
LYM 11 9 12463. 2 E 8.25 1.49E- 01 9.5 LYM28 7 12771. 6 P 1.87 8 3.99E01 2.8
LYM28 9 12493. 2 E 8.25 1.49E- 01 9.5 LYM 10 7 12632. 1 P 1.94 4 4.04E01 6.4
LYM 16 2 12234. 3 E 8.43 8 1.63E- 01 12 LYM 10 2 12222. 6 P 1.94 2 4.04E01 6.2
LYM 14 8 12174. 1 E 8.62 5 1.74E- 01 14.5 LYM28 8 12741. 9 P 2.04 4.14E01 11.6
LYM 14 0 12262. 3 E 7.75 1.85E- 01 2.8 LYM 13 8 12564. 1 P 2.04 9 4.46E01 12.1
LYM3 12042. 1 E 7.75 1.85E- 01 2.8 LYM29 1 12754. 9 P 2.07 7 4.54E01 13.7
LYM 15 11611. 3 E 8.47 9 1.89E- 01 12.5 LYM28 7 12774. 6 P 1.89 9 4.58E01 3.9
LYM 14 1 12404. 4 E 8.31 3 1.97E01 10.3 LYM 17 3 12981. 5 P 1.95 9 4.85E01 7.2
LYM 16 2 12234. 4 E 8.43 8 2.63E01 12 LYM 13 0 12331. 3 P 2.13 3 4.95E01 16.7
LYM28 9 12493. 6 E 8 2.66E01 6.2 LYM 13 7 12154. 5 P 2.09 5 5.07E01 14.6
LYM29 0 12502. 4 E 8 2.66E01 6.2 LYM20 1 12834. 6 P 1.97 5.14E- 01 7.8
LYM 17 4 12411. 2 E 8.68 8 2.73E01 15.3 LYM 14 3 12524. 7 P 2.08 8 5.44E01 14.2
LYM29 0 12501. 3 E 8.25 2.78E01 9.5 LYM20 1 12833. 9 P 1.86 4 5.52E01 2
LYM1 11604. 4 E 8.06 3 3.07E01 7 LYM 14 2 12802. 9 P 1.93 1 5.89E01 5.7
LYM21 11673. 1 E 8.06 3 3.07E01 7 LYM20 1 12833. 7 P 1.88 3 6.03E01 3
LYM 17 11683. 1 E 7.75 3.22E01 2.8 LYM 18 3 12994. 8 P 2.00 6 6.56E01 9.7
LYM2 11692. 3 E 7.75 3.22E01 2.8 LYM 10 0 12133. 3 P 1.85 3 6.64E01 1.4
293
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 11 9 12462. 1 E 8.68 8 3.33E01 15.3 LYM 13 0 12333. 1 P 1.91 3 6.70E01 4.7
LYM 14 1 12404. 3 E 8.12 5 3.36E01 7.8 LYM 14 3 12524. 5 P 1.99 6.99E01 8.9
LYM 10 2 12222. 3 E 8.43 8 3.42E01 12 LYM29 1 12753. 6 P 1.89 3 7.11E01 3.6
LYM28 9 12491. 1 E 8.75 3.45E01 16.1 LYM 14 2 12804. 1 P 1.90 1 7.24E01 4
LYM 13 7 12153. 1 E 7.81 3 3.45E01 3.7 LYM 14 3 12521. 1 P 1.84 8 7.39E01 1.1
LYM 14 3 12521. 1 E 7.81 3 3.45E01 3.7 LYM44 11885. 4 P 1.86 4 7.91E01 2
LYM21 11671. 2 E 8.18 8 3.58E01 8.6 LYM27 0 12871. 8 P 1.90 6 8.00E01 4.3
LYM 17 11682. 1 E 7.93 8 3.99E01 5.3 LYM27 0 12871. 5 P 1.94 8.20E01 6.1
LYM1 11602. 1 E 8 4.16E01 6.2 LYM20 8 13012. 5 P 1.90 1 8.47E01 4
LYM 15 2 12371. 2 E 8 4.16E01 6.2 LYM 18 3 12994. 7 P 1.85 7 8.51E01 1.6
LYM26 8 12483. 2 E 8 4.16E01 6.2 LYM 19 8 13005. 8 P 1.84 2 8.74E01 0.8
LYM 19 11751. 4 E 8.18 8 4.45E01 8.6 LYM 18 3 12993. 7 P 1.86 5 8.86E01 2.1
LYM 15 11612. 3 E 8.25 4.51E01 9.5 LYM 15 2 12372. 2 P 1.86 1 8.88E01 1.8
LYM26 8 12482. 3 E 8.06 3 5.16E01 7 LYM28 7 12773. 7 P 1.86 8.96E01 1.8
LYM 13 2 12273. 2 E 7.81 3 5.31E01 3.7 LYM 14 2 12804. 3 P 1.86 9 9.02E01 2.3
LYM 13 8 12562. 1 E 7.75 5.45E01 2.8 LYM21 2 13034. 9 P 1.87 9.29E01 2.3
LYM 13 8 12564. 1 E 7.75 5.45E01 2.8 LYM44 11882. 1 P 1.84 9 9.29E01 1.2
LYM3 12041. 1 E 7.75 5.45E01 2.8 LYM25 5 13081. 5 P 1.84 8 9.43E01 1.1
LYM 14 8 12173. 1 E 8.31 3 5.58E01 10.3 LYM 13 7 12152. 1 P 1.83 4 9.58E01 0.3
LYM26 8 12483. 4 E 7.62 5 5.60E01 1.2 LYM 17 4 12414. 2 P 1.83 2 9.58E01 0.2
LYM 10 6 12141. 4 E 7.68 8 5.77E01 2 LYM 18 3 12993. 5 P 1.83 9 9.59E01 0.6
LYM2 11693. 3 E 7.68 8 5.77E01 2 LYM27 0 12872. 7 P 1.83 6 9.62E01 0.4
LYM9 11633. 2 E 7.68 8 5.77E01 2 LYM 17 3 12982. 7 P 1.83 6 9.78E01 0.4
LYM 16 2 12231. 1 E 8 5.91E01 6.2 LYM 17 3 12981. 8 P 1.83 2 9.86E01 0.3
LYM 10 5 12294. 2 E 7.87 5 6.19E01 4.5 CONTR OL P 1.82 8 0
LYM 13 8 12561. 3 E 7.87 5 6.19E01 4.5 LYM57 12012. 2 A 93.3 2 8.80E03 2.5
294
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 4 12412. 1 E 7.85 4 6.25E01 4.2 LYM14 12054. 2 A 93.0 18 1.70E02 2.2
LYM3 12041. 2 E 8.06 3 6.33E01 7 LYM14 8 12171. 2 A 93.0 29 1.75E02 2.2
LYM10 11742. 1 E 7.81 3 6.40E01 3.7 LYM15 2 12373. 1 A 92.6 21 4.54E02 1.8
LYM17 4 12411. 3 E 8.12 5 6.61E- 01 7.8 LYM43 11791. 2 A 93.7 04 4.64E02 2.9
LYM12 9 12573. 5 E 7.62 5 6.64E01 1.2 LYM14 0 12262. 3 A 92.8 65 5.07E02 2
LYM10 2 12221. 1 E 7.75 6.70E01 2.8 LYM13 2 12273. 2 A 93.0 98 5.40E02 2.3
LYM13 4 12311. 2 E 7.75 6.70E01 2.8 LYM13 0 12331. 3 A 92.4 87 5.67E02 1.6
LYM15 11612. 2 E 7.75 6.70E01 2.8 LYM66 11954. 5 A 93.4 27 5.73E02 2.6
LYM3 12043. 1 E 7.75 6.70E01 2.8 LYM11 9 12461. 4 A 93.2 97 6.70E02 2.5
LYM11 1 12251. 1 E 7.87 5 6.83E01 4.5 LYM43 11791. 4 A 92.3 85 7.11E- 02 1.5
LYM13 11771. 6 E 7.87 5 6.83E01 4.5 LYM24 12063. 3 A 93.2 33 7.13E- 02 2.4
LYM9 11632. 2 E 7.60 7 7.08E01 0.9 LYM29 0 12504. 1 A 93.3 5 8.10E- 02 2.6
LYM10 2 12222. 6 E 7.87 5 7.30E01 4.5 LYM51 11891. 1 A 92.5 07 8.56E02 1.6
LYM17 4 12414. 2 E 7.75 7.43E01 2.8 LYM11 9 12462. 1 A 92.3 46 8.64E02 1.5
LYM10 0 12131. 3 E 7.81 3 7.57E01 3.7 LYM14 12051. 1 A 93.3 18 9.94E02 2.5
LYM14 0 12261. 1 E 7.62 5 7.90E01 1.2 LYM14 0 12264. 1 A 92.4 5 1.09E- 01 1.6
LYM28 9 12492. 2 E 7.64 3 8.18E- 01 1.4 LYM14 0 12261. 4 A 93.7 06 1.36E- 01 2.9
LYM10 11744. 5 E 7.62 5 8.54E01 1.2 LYM10 0 12131. 2 A 92.8 99 1.46E- 01 2.1
LYM2 11695. 3 E 7.62 5 8.54E01 1.2 LYM66 11955. 2 A 93.9 05 1.53E- 01 3.2
LYM19 11752. 2 E 7.68 8 8.62E01 2 LYM17 4 12411. 2 A 91.9 81 1.83E- 01 1.1
LYM10 6 12142. 2 E 7.56 3 8.70E01 0.4 LYM67 11781. 5 A 92.2 97 1.95E- 01 1.4
LYM14 3 12523. 4 E 7.56 3 8.70E01 0.4 LYM57 12012. 6 A 92.0 94 1.96E- 01 1.2
LYM15 3 12321. 2 E 7.62 5 8.89E01 1.2 LYM95 12124. 4 A 92.0 49 2.11E01 1.1
LYM14 8 12172. 1 E 7.56 3 9.62E01 0.4 LYM15 2 12372. 2 A 93.0 98 2.28E01 2.3
LYM14 8 12174. 2 E 7.56 3 9.62E01 0.4 LYM17 2 12302. 2 A 91.9 37 2.30E01 1
LYM4 11705. 2 E 7.54 2 9.88E01 0.1 LYM11 9 12462. 2 A 92.9 69 2.34E01 2.1
295
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
CONTR OL E 7.53 6 0 LYM95 12124. 6 A 93.6 93 2.49E01 2.9
LYM 14 3 12524. 7 F 0.51 2 4.90E05 57.7 LYM68 11942. 2 A 91.9 02 2.57E01 1
LYM 13 8 12561. 1 F 0.50 8 5.30E05 56.2 LYM29 0 12502. 4 A 92.1 94 3.14E- 01 1.3
LYM28 9 12493. 2 F 0.48 5 1.47E- 04 49.2 LYM51 11894. 2 A 93.1 54 3.27E01 2.3
LYM 10 11742. 2 F 0.46 9 2.28E04 44.2 LYM53 11844. 2 A 92.7 58 3.35E01 1.9
LYM 10 2 12222. 2 F 0.47 5 3.63E04 46.1 LYM 10 0 12131. 3 A 92.1 72 3.40E01 1.3
LYM 14 8 12174. 1 F 0.45 5 4.47E04 40 LYM31 11923. 1 A 92.4 07 3.77E01 1.5
LYM 13 2 12271. 4 F 0.45 4 4.55E04 39.8 LYM67 11782. 6 A 92.1 38 3.82E01 1.2
LYM 11 9 12463. 2 F 0.44 9.36E04 35.6 LYM3 12043. 1 A 91.8 72 4.24E01 0.9
LYM 19 11754. 1 F 0.44 9.71E04 35.6 LYM24 12061. 4 A 94.3 5 4.31E01 3.7
LYM 13 2 12273. 2 F 0.45 5 1.09E- 03 40.1 LYM 14 3 12523. 4 A 92.4 69 4.55E01 1.6
LYM 10 11741. 2 F 0.52 5 1.40E- 03 61.5 LYM 14 12051. 4 A 92.8 27 4.66E01 2
LYM 10 5 12293. 1 F 0.42 5 2.11E03 30.8 LYM 17 0 12453. 2 A 91.5 12 4.71E01 0.5
LYM 19 11753. 1 F 0.43 9 2.71E03 35 LYM 13 8 12566. 1 A 91.5 08 4.74E01 0.5
LYM4 11705. 2 F 0.42 2.85E03 29.4 LYM25 4 12472. 3 A 92.4 69 5.07E01 1.6
LYM 11 9 12461. 4 F 0.41 6 3.48E03 28.2 LYM25 4 12474. 4 A 93.0 13 5.16E- 01 2.2
LYM 10 11744. 1 F 0.45 9 7.24E03 41.1 LYM 15 2 12371. 2 A 91.4 63 5.20E01 0.5
LYM 15 2 12371. 2 F 0.39 9 1.05E02 22.8 LYM 13 7 12152. 1 A 92.2 31 5.23E01 1.3
LYM 19 11751. 4 F 0.39 7 1.36E02 22.1 LYM 14 12052. 5 A 91.5 87 5.37E01 0.6
LYM 13 0 12334. 1 F 0.48 2 1.68E02 48.5 LYM69 11852. 2 A 92.8 9 5.41E- 01 2
LYM 13 7 12153. 1 F 0.39 6 1.72E02 22 LYM68 11942. 3 A 91.4 29 5.48E01 0.4
LYM4 11706. 5 F 0.47 3 1.86E02 45.6 LYM43 11792. 2 A 93.0 65 5.58E01 2.2
LYM 17 4 12414. 3 F 0.51 5 1.92E02 58.5 LYM69 11853. 5 A 91.5 2 5.63E01 0.5
LYM28 9 12491. 4 F 0.39 9 1.98E02 22.7 LYM69 11853. 4 A 91.4 8 5.87E01 0.5
LYM 14 1 12402. 4 F 0.45 1 2.34E02 38.9 LYM67 11782. 4 A 92.5 68 6.01E- 01 1.7
LYM9 11632. 1 F 0.55 7 2.82E02 71.3 LYM 16 2 12234. 3 A 92.2 61 6.30E01 1.4
296
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 14 0 12262. 3 F 0.43 1 3.06E02 32.7 LYM 13 2 12275. 1 A 91.4 68 6.30E01 0.5
LYM 13 0 12333. 1 F 0.43 9 3.87E02 35 LYM67 11782. 5 A 91.3 78 6.44E01 0.4
LYM 15 2 12372. 2 F 0.41 2 3.93E02 26.7 LYM26 8 12481. 1 A 91.4 41 6.58E01 0.5
LYM1 11604. 4 F 0.43 9 4.25E02 35.1 LYM31 11921. 3 A 91.5 36 6.83E01 0.6
LYM1 11603. 2 F 0.37 7 4.78E02 16 LYM95 12121. 4 A 91.6 2 6.87E01 0.7
LYM 14 1 12404. 3 F 0.37 1 6.69E02 14.3 LYM 14 3 12524. 2 A 91.6 62 7.07E01 0.7
LYM 16 2 12231. 1 F 0.43 3 7.48E02 33.4 LYM57 12013. 3 A 92.4 76 7.11E01 1.6
LYM 13 11772. 1 F 0.36 9 7.58E02 13.7 LYM62 12022. 4 A 91.9 5 7.18E01 1
LYM1 11602. 1 F 0.37 9 7.70E02 16.7 LYM26 11824. 1 A 91.6 83 7.41E01 0.7
LYM 16 2 12231. 3 F 0.39 9 8.40E02 22.7 LYM 17 4 12412. 1 A 91.3 87 7.62E01 0.4
LYM 16 11624. 4 F 0.39 5 8.75E02 21.6 LYM67 11783. 5 A 91.7 09 7.63E01 0.8
LYM 13 8 12561. 3 F 0.46 8 8.78E02 44 LYM 10 5 12293. 1 A 91.7 57 7.81E01 0.8
LYM9 11632. 2 F 0.38 5 9.44E02 18.5 LYM30 11913. 5 A 91.6 17 7.83E01 0.7
LYM 14 0 12261. 1 F 0.36 9 9.78E02 13.6 LYM95 12124. 5 A 91.3 05 7.91E01 0.3
LYM 17 11681. 4 F 0.40 8 9.89E02 25.5 LYM 17 2 12301. 2 A 91.3 51 7.92E01 0.4
LYM 10 0 12133. 1 F 0.43 2 1.18E01 33 LYM43 11791. 5 A 91.2 02 7.93E01 0.2
LYM1 11602. 6 F 0.55 4 1.25E01 70.6 LYM53 11843. 2 A 94.9 42 7.95E01 4.3
LYM 17 4 12411. 3 F 0.44 4 1.29E01 36.6 LYM 17 0 12454. 2 A 91.4 69 7.97E01 0.5
LYM28 9 12492. 2 F 0.36 9 1.39E01 13.6 LYM 11 9 12463. 2 A 91.4 89 8.08E01 0.5
LYM 16 2 12234. 4 F 0.42 7 1.55E01 31.5 LYM 11 1 12254. 4 A 91.5 09 8.21E01 0.5
LYM 14 0 12264. 1 F 0.36 1.58E01 10.7 LYM31 11922. 3 A 91.5 75 8.21E01 0.6
LYM 12 9 12573. 5 F 0.35 9 1.61E01 10.5 LYM 13 8 12562. 1 A 91.4 48 8.41E01 0.5
LYM 13 2 12275. 1 F 0.39 9 1.64E01 22.9 LYM 17 4 12411. 3 A 91.3 86 8.43E01 0.4
LYM 15 3 12323. 2 F 0.35 8 1.76E01 10.2 LYM51 11893. 2 A 91.3 33 8.55E01 0.3
LYM21 11673. 1 F 0.41 3 1.80E01 27.1 LYM 17 0 12453. 3 A 91.3 21 8.70E01 0.3
LYM 15 11612. 2 F 0.37 8 1.96E01 16.3 LYM62 12021. 1 A 91.1 7 8.74E01 0.2
297
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 16 2 12234. 3 F 0.42 4 1.97E01 30.6 LYM 14 0 12261. 2 A 91.3 21 8.80E01 0.3
LYM 14 1 12404. 4 F 0.41 8 1.98E01 28.7 LYM 13 4 12312. 4 A 91.2 4 8.83E01 0.2
LYM 14 8 12171. 2 F 0.45 2 2.19E01 39 LYM 17 2 12301. 3 A 91.3 64 8.86E01 0.4
LYM 19 11752. 2 F 0.40 8 2.21E01 25.5 LYM 15 2 12372. 1 A 91.1 44 8.89E01 0.1
LYM 11 9 12462. 2 F 0.45 7 2.36E01 40.7 LYM 14 3 12521. 1 A 91.3 89 8.93E01 0.4
LYM 15 11611. 3 F 0.44 6 2.37E01 37.3 LYM30 11913. 3 A 91.2 04 8.94E01 0.2
LYM 13 11771. 6 F 0.35 5 2.37E01 9.2 LYM 11 9 12461. 1 A 91.1 51 9.05E01 0.1
LYM 19 11751. 5 F 0.39 6 2.37E01 21.9 LYM57 12012. 4 A 91.4 74 9.22E01 0.5
LYM 11 3 12442. 1 F 0.40 7 2.56E01 25.4 LYM25 4 12474. 3 A 91.2 98 9.38E01 0.3
LYM 13 8 12564. 1 F 0.35 5 2.62E01 9.4 LYM 14 12052. 4 A 91.1 21 9.52E01 0.1
LYM 15 11614. 4 F 0.35 8 2.72E01 10.1 LYM62 12023. 4 A 91.1 12 9.60E01 0.1
LYM 13 0 12332. 2 F 0.48 1 2.74E01 48 LYM66 11952. 1 A 91.0 69 9.64E01 0
LYM1 11601. 1 F 0.40 3 2.92E01 24.1 LYM43 11793. 2 A 91.0 6 9.73E01 0
LYM 14 0 12261. 4 F 0.35 9 2.93E01 10.6 LYM 11 1 12254. 3 A 91.0 41 9.81E01 0
LYM 10 2 12222. 3 F 0.45 1 2.97E01 38.8 LYM 13 0 12332. 2 A 91.0 95 9.83E01 0.1
LYM 10 11742. 1 F 0.39 4 3.00E01 21.1 LYM 15 2 12376. 1 A 91.0 52 9.90E01 0
LYM 13 4 12311. 2 F 0.40 1 3.03E01 23.4 CONTR OL A 91.0 24 0
LYM 14 8 12174. 2 F 0.34 9 3.05E01 7.4 LYM69 11853. 5 B 0.38 2 7.33E03 13.4
LYM 17 4 12414. 2 F 0.39 3 3.10E01 20.9 LYM53 11841. 2 B 0.40 7 1.01E02 20.8
LYM28 9 12493. 6 F 0.38 3.17E01 17.1 LYM 13 8 12561. 1 B 0.41 8 1.55E02 24
LYM22 11762. 1 F 0.36 1 3.24E01 11.2 LYM 13 4 12314. 2 B 0.36 6 5.15E02 8.8
LYM 17 4 12412. 1 F 0.42 5 3.25E01 30.9 LYM 14 0 12264. 1 B 0.36 2 7.22E02 7.5
LYM21 11671. 2 F 0.39 3 3.28E01 21 LYM 11 9 12461. 1 B 0.39 7 1.11E01 17.8
LYM 11 1 12251. 1 F 0.39 5 3.31E01 21.4 LYM30 11913. 5 B 0.35 6 1.56E01 5.6
LYM 17 11684. 5 F 0.34 7 3.33E01 6.9 LYM53 11844. 2 B 0.37 7 1.57E01 11.9
LYM9 11633. 7 F 0.40 6 3.55E01 25 LYM51 11894. 2 B 0.35 8 1.63E01 6.3
298
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM11 1 12254. 4 F 0.34 6 3.64E01 6.5 LYM51 11891. 1 B 0.35 8 1.64E01 6.2
LYM14 3 12524. 2 F 0.35 2 3.68E01 8.3 LYM10 0 12131. 2 B 0.36 1 1.82E01 7.3
LYM10 6 12142. 2 F 0.35 1 3.69E01 8.1 LYM53 11841. 1 B 0.36 1 1.82E01 7.3
LYM15 11614. 3 F 0.42 7 3.69E01 31.5 LYM11 1 12251. 3 B 0.39 8 2.06E01 18.2
LYM10 11744. 5 F 0.35 3 3.79E01 8.6 LYM14 3 12524. 2 B 0.44 6 2.56E01 32.3
LYM11 9 12462. 1 F 0.49 3.83E01 50.8 LYM57 12013. 5 B 0.38 3 2.62E01 13.6
LYM17 4 12411. 2 F 0.39 3 3.90E01 20.8 LYM13 8 12561. 3 B 0.38 1 2.70E01 13.2
LYM26 8 12483. 2 F 0.42 7 3.97E01 31.4 LYM11 1 12252. 2 B 0.36 8 2.79E01 9.1
LYM17 11684. 4 F 0.37 9 4.02E01 16.6 LYM17 2 12301. 2 B 0.35 3.03E01 3.9
LYM13 11771. 9 F 0.39 2 4.05E01 20.7 LYM13 8 12562. 1 B 0.35 7 3.98E01 6
LYM28 9 12491. 1 F 0.43 4.12E01 32.5 LYM26 8 12482. 3 B 0.35 9 4.07E01 6.7
LYM29 0 12502. 4 F 0.34 5 4.15E01 6.3 LYM51 11893. 2 B 0.34 8 4.13E01 3.4
LYM17 11682. 1 F 0.41 4.20E01 26.2 LYM10 5 12295. 2 B 0.36 7 4.31E01 8.9
LYM14 8 12172. 1 F 0.36 9 4.31E01 13.6 LYM10 5 12293. 1 B 0.36 4.56E01 6.9
LYM10 5 12294. 2 F 0.38 9 4.33E01 19.8 LYM29 0 12502. 4 B 0.35 1 4.58E01 4.3
LYM2 11695. 3 F 0.35 1 4.55E01 7.9 LYM26 8 12483. 2 B 0.37 3 4.72E01 10.8
LYM10 2 12222. 6 F 0.37 1 4.65E01 14.2 LYM14 3 12521. 2 B 0.37 8 5.08E01 12.1
LYM15 11612. 3 F 0.38 5 4.85E01 18.5 LYM62 12021. 1 B 0.36 8 5.10E01 9.3
LYM14 3 12521. 1 F 0.35 3 4.93E01 8.6 LYM68 11941. 4 B 0.40 8 5.11E01 21.2
LYM29 0 12501. 3 F 0.39 9 5.13E01 22.9 LYM29 0 12501. 3 B 0.36 1 5.13E01 7.3
LYM15 3 12321. 2 F 0.38 8 5.47E01 19.4 LYM14 8 12174. 2 B 0.34 7 5.34E01 3
LYM17 11683. 1 F 0.33 8 5.62E01 4 LYM31 11923. 4 B 0.35 1 5.39E01 4.3
LYM26 8 12483. 4 F 0.36 1 5.88E01 11.1 LYM14 12052. 5 B 0.34 6 5.46E01 2.8
LYM10 2 12221. 1 F 0.34 8 5.96E01 7.2 LYM11 1 12254. 4 B 0.34 6 5.71E01 2.8
LYM2 11693. 3 F 0.36 8 6.14E01 13.1 LYM51 11893. 4 B 0.34 9 5.77E01 3.7
LYM13 8 12562. 1 F 0.36 1 6.15E01 11.1 LYM13 7 12153. 1 B 0.37 8 5.84E01 12.3
299
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM21 11672. 4 F 0.34 7 6.16E01 6.8 LYM13 2 12271. 4 B 0.34 6 5.95E01 2.8
LYM13 11773. 2 F 0.33 8 6.25E01 4 LYM13 8 12564. 1 B 0.34 6 6.18E01 2.8
LYM13 2 12275. 3 F 0.37 6.32E01 13.9 LYM30 11913. 3 B 0.38 8 6.38E01 15.2
LYM13 0 12331. 3 F 0.35 8 6.50E01 10.2 LYM13 7 12152. 1 B 0.34 4 6.57E01 2.3
LYM14 8 12173. 1 F 0.37 8 6.57E01 16.3 LYM14 12052. 4 B 0.34 6 6.71E01 2.6
LYM3 12041. 2 F 0.34 3 6.88E01 5.7 LYM11 9 12462. 2 B 0.34 3 6.92E01 1.9
LYM13 7 12151. 1 F 0.34 2 6.98E01 5.3 LYM25 4 12474. 4 B 0.35 6.93E01 3.9
LYM10 6 12141. 4 F 0.34 9 7.07E01 7.4 LYM43 11791. 5 B 0.34 1 7.48E01 1.3
LYM14 1 12404. 2 F 0.34 6 7.13E01 6.6 LYM62 12022. 1 B 0.35 7 7.54E01 6
LYM14 3 12521. 2 F 0.33 7 7.26E01 3.6 LYM53 11842. 4 B 0.35 8 7.57E01 6.3
LYM10 5 12294. 3 F 0.35 3 7.73E01 8.6 LYM10 5 12297. 1 B 0.35 9 7.60E01 6.7
LYM10 0 12131. 3 F 0.34 5 8.18E01 6 LYM16 2 12231. 3 B 0.36 1 7.67E01 7.3
LYM9 11633. 2 F 0.34 8.64E01 4.6 LYM13 7 12151. 1 B 0.34 1 7.73E01 1.3
LYM11 1 12252. 2 F 0.34 8.78E01 4.8 LYM57 12013. 3 B 0.36 2 7.76E01 7.5
LYM26 8 12482. 1 F 0.33 8.79E01 1.6 LYM68 11941. 3 B 0.35 7 7.84E01 6
LYM11 3 12444. 4 F 0.32 8 9.04E01 0.8 LYM17 2 12301. 3 B 0.34 9 8.04E01 3.7
LYM16 2 12233. 2 F 0.32 7 9.42E01 0.5 LYM14 8 12174. 1 B 0.34 7 8.07E01 3
LYM10 2 12222. 1 F 0.32 8 9.74E01 0.9 LYM51 11892. 1 B 0.34 4 8.21E01 2.3
LYM15 3 12324. 1 F 0.32 7 9.76E01 0.5 LYM53 11843. 2 B 0.35 2 8.35E01 4.4
LYM10 6 12144. 4 F 0.32 6 9.76E01 0.3 LYM26 8 12481. 1 B 0.33 9 8.37E01 0.8
CONTR OL F 0.32 5 0 LYM13 7 12151. 2 B 0.34 1 8.42E01 1.3
LYM19 11752. 2 G 9.40 2 2.33E04 43.1 LYM68 11942. 3 B 0.34 3 8.62E01 1.9
LYM14 3 12524. 7 G 8.84 9 3.23E04 34.7 LYM29 0 12502. 1 B 0.33 9 8.75E01 0.6
LYM13 2 12275. 3 G 8.76 7 4.00E04 33.4 LYM13 4 12313. 2 B 0.33 9 8.82E01 0.6
LYM15 11614. 4 G 8.72 9 4.28E04 32.9 LYM30 11913. 4 B 0.35 5 8.85E01 5.5
LYM4 11705. 2 G 8.61 6 5.60E04 31.2 LYM15 2 12373. 2 B 0.34 5 8.86E01 2.4
300
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11632. 1 G 8.60 5 6.15E04 31 LYM31 11922. 3 B 0.34 4 9.08E01 2.3
LYM13 11772. 2 G 8.53 1 7.47E04 29.8 LYM69 11852. 2 B 0.34 3 9.23E01 1.9
LYM17 4 12414. 3 G 8.46 5 9.60E04 28.8 LYM67 11781. 5 B 0.34 9.46E01 1
LYM13 2 12273. 2 G 8.48 1 1.28E03 29.1 LYM15 2 12372. 1 B 0.33 9 9.51E01 0.6
LYM10 5 12294. 3 G 8.32 1.52E03 26.6 LYM57 12012. 6 B 0.33 8 9.53E01 0.2
LYM13 8 12561. 1 G 8.22 5 2.11E03 25.2 LYM13 7 12154. 5 B 0.33 8 9.64E01 0.4
LYM19 11754. 1 G 8.14 3 2.69E03 23.9 LYM17 2 12304. 2 B 0.34 1 9.64E01 1.3
LYM11 3 12444. 5 G 8.01 5 4.33E03 22 LYM57 12012. 2 B 0.33 8 9.71E01 0.2
LYM11 1 12252. 2 G 7.97 2 5.09E03 21.3 LYM26 8 12482. 1 B 0.33 8 9.86E01 0.2
LYM15 3 12324. 1 G 8.02 2 6.24E03 22.1 LYM67 11783. 5 B 0.33 7 9.93E01 0.1
LYM13 0 12334. 1 G 8.04 6 6.78E03 22.5 CONTR OL B 0.33 7 0
LYM17 4 12411. 3 G 8.77 2 1.45E02 33.5 LYM13 7 12152. 1 C 4.38 8 2.02E02 15.2
LYM17 11683. 1 G 7.67 9 1.61E02 16.9 LYM53 11844. 2 C 4.37 5 2.89E02 14.9
LYM13 0 12331. 3 G 7.68 4 1.97E02 17 LYM11 1 12251. 3 C 4.3 4.04E02 12.9
LYM15 11611. 3 G 7.85 2.01E02 19.5 LYM51 11894. 2 C 4.27 5 4.70E02 12.3
LYM10 11742. 1 G 8.12 7 2.10E02 23.7 LYM14 8 12174. 2 C 4.32 5 5.44E02 13.6
LYM17 11682. 1 G 7.60 4 2.15E02 15.7 LYM13 8 12561. 1 C 4.3 6.41E02 12.9
LYM11 1 12254. 4 G 7.60 1 2.17E02 15.7 LYM11 1 12252. 2 C 4.22 5 6.83E02 11
LYM15 3 12321. 2 G 8.37 4 2.39E02 27.5 LYM11 9 12461. 1 C 4.21 5 8.43E02 10.7
LYM11 3 12443. 1 G 7.57 4 2.47E02 15.3 LYM11 1 12254. 4 C 4.18 1 1.22E01 9.8
LYM10 0 12134. 1 G 7.56 2 2.55E02 15.1 LYM53 11841. 1 C 4.25 1.46E01 11.6
LYM28 9 12493. 2 G 8.63 3.01E02 31.4 LYM29 0 12501. 3 C 4.16 9 1.58E01 9.5
LYM22 11764. 7 G 7.56 6 3.04E02 15.2 LYM13 7 12153. 1 C 4.64 1 1.63E01 21.9
LYM13 0 12332. 1 G 7.50 5 3.23E02 14.2 LYM14 3 12524. 2 C 4.31 3 1.76E01 13.3
LYM1 11601. 1 G 9.44 5 3.25E02 43.8 LYM13 7 12154. 5 C 4.10 6 1.78E01 7.9
LYM15 3 12322. 1 G 7.46 2 3.90E02 13.6 LYM13 4 12314. 2 C 4.34 4 1.83E01 14.1
301
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 0 12133. 1 G 7.94 8 4.23E02 21 LYM13 8 12564. 1 C 4.19 4 2.80E01 10.2
LYM10 2 12221. 1 G 7.44 4 4.24E02 13.3 LYM25 4 12474. 4 c 4.13 8 2.93E01 8.7
LYM14 0 12261. 4 G 7.46 4.52E02 13.5 LYM11 9 12462. 2 c 4.13 1 3.11E01 8.5
LYM22 11761. 3 G 7.41 8 4.69E02 12.9 LYM51 11893. 2 c 4.16 9 3.79E01 9.5
LYM10 5 12293. 1 G 7.40 4 5.03E02 12.7 LYM69 11853. 5 c 3.98 8 3.90E01 4.7
LYM13 2 12271. 4 G 8.77 8 5.13E02 33.6 LYM14 0 12264. 1 c 4.11 3 4.20E01 8
LYM13 2 12275. 1 G 7.73 7 5.17E02 17.8 LYM10 5 12297. 1 c 3.98 1 4.86E01 4.6
LYM13 4 12312. 3 G 8.64 6 5.27E02 31.6 LYM51 11893. 4 c 4.24 4 5.14E01 11.5
LYM16 2 12234. 4 G 7.46 1 5.37E02 13.6 LYM13 8 12561. 3 c 4.28 1 5.21E01 12.4
LYM19 11753. 1 G 7.79 3 6.24E02 18.6 LYM68 11941. 4 c 4.12 3 5.24E01 8.3
LYM28 9 12493. 6 G 8.21 8 6.32E02 25.1 LYM13 4 12312. 4 c 3.95 6 6.33E01 3.9
LYM13 8 12566. 1 G 7.34 9 8.04E02 11.9 LYM13 8 12562. 1 c 3.91 3 6.53E01 2.8
LYM3 12042. 1 G 8.32 8 8.35E02 26.8 LYM53 11843. 2 c 3.97 5 6.64E01 4.4
LYM13 4 12314. 2 G 8.44 2 8.52E02 28.5 LYM53 11841. 2 c 4.02 6.89E01 5.6
LYM21 11674. 5 G 7.26 1 9.00E02 10.5 LYM11 1 12251. 1 c 3.99 4 7.37E01 4.9
LYM15 2 12371. 3 G 7.55 4 9.80E02 15 LYM25 4 12472. 3 c 3.98 8 7.61E01 4.7
LYM13 4 12311. 2 G 7.53 9 1.05E01 14.7 LYM26 11824. 1 c 3.96 9 7.64E01 4.2
LYM11 1 12251. 1 G 7.51 2 1.05E01 14.3 LYM17 2 12304. 1 c 3.86 4 7.87E01 1.5
LYM10 6 12144. 4 G 7.54 1.07E01 14.8 LYM14 0 12261. 1 c 3.85 6 8.15E01 1.3
LYM28 9 12491. 4 G 7.44 2 1.10E01 13.3 LYM51 11891. 1 c 3.85 8.33E01 1.1
LYM13 11773. 2 G 7.78 1.11E01 18.4 LYM51 11892. 1 c 3.85 6 8.47E01 1.3
LYM16 11624. 4 G 7.50 4 1.12E01 14.2 LYM13 7 12151. 2 c 3.88 1 8.63E01 1.9
LYM16 2 12233. 2 G 7.20 5 1.15E01 9.7 LYM13 7 12151. 1 c 3.89 4 8.70E01 2.3
LYM10 6 12144. 3 G 8.29 8 1.25E01 26.3 LYM11 9 12462. 1 c 3.83 1 9.06E01 0.6
LYM3 12041. 2 G 7.35 1 1.34E01 11.9 LYM26 11824. 5 c 3.83 1 9.06E01 0.6
LYM13 8 12562. 1 G 7.15 6 1.44E01 8.9 LYM57 12013. 3 c 3.88 9.10E01 1.9
302
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM13 7 12153. 1 G 8.56 5 1.46E- 01 30.4 LYM29 0 12504. 1 C 3.85 6 9.32E01 1.3
LYM11 3 12442. 2 G 7.70 3 1.48E- 01 17.3 LYM25 4 12474. 3 c 3.82 5 9.39E01 0.5
LYM17 11681. 4 G 7.50 6 1.49E- 01 14.3 LYM10 0 12131. 2 c 3.81 9 9.68E01 0.3
LYM10 2 12222. 2 G 7.66 1 1.59E- 01 16.6 LYM66 11954. 5 c 3.81 3 9.80E01 0.1
LYM13 0 12333. 1 G 7.53 8 1.65E- 01 14.7 LYM57 12012. 6 c 3.81 3 9.80E01 0.1
LYM11 3 12442. 1 G 8.27 7 1.67E- 01 26 CONTR OL c 3.80 7 0
LYM10 5 12294. 2 G 7.50 4 1.68E- 01 14.2 LYM13 4 12314. 2 D 0.47 4 2.43E04 37.7
LYM10 11742. 2 G 8.76 4 1.69E- 01 33.4 LYM26 8 12482. 3 D 0.45 2 7.22E04 31.3
LYM14 1 12404. 4 G 8.02 8 1.72E- 01 22.2 LYM31 11923. 4 D 0.44 2 1.43E- 03 28.3
LYM14 0 12261. 1 G 8.77 1.78E- 01 33.5 LYM13 8 12561. 1 D 0.49 4.94E03 42.3
LYM1 11602. 1 G 7.47 4 1.80E- 01 13.8 LYM17 0 12453. 2 D 0.43 7.39E03 24.9
LYM16 2 12231. 3 G 7.51 2 1.84E- 01 14.3 LYM14 8 12171. 2 D 0.43 5 8.04E03 26.3
LYM10 2 12222. 3 G 7.90 6 1.85E- 01 20.3 LYM57 12013. 5 D 0.41 4 1.08E02 20.3
LYM10 0 12131. 2 G 7.78 3 1.88E- 01 18.5 LYM68 11942. 3 D 0.43 1 1.45E02 25.2
LYM14 1 12404. 1 G 7.44 3 1.92E- 01 13.3 LYM43 11791. 5 D 0.47 1 1.54E02 36.6
LYM13 11772. 1 G 7.64 3 1.99E01 16.3 LYM14 0 12264. 1 D 0.40 8 1.74E02 18.5
LYM1 11602. 6 G 7.44 3 1.99E01 13.3 LYM10 0 12131. 2 D 0.49 5 4.32E02 43.5
LYM4 11706. 3 G 7.16 6 2.00E01 9.1 LYM13 7 12152. 1 D 0.39 4.90E02 13.2
LYM15 3 12323. 2 G 7.96 8 2.11E01 21.3 LYM57 12012. 2 D 0.39 5.17E- 02 13.1
LYM2 11695. 3 G 7.81 9 2.19E01 19 LYM69 11853. 5 D 0.42 8 6.11E- 02 24.3
LYM3 12043. 1 G 8.85 6 2.24E01 34.8 LYM14 12052. 4 D 0.38 7 6.34E02 12.5
LYM13 11771. 9 G 8.78 2 2.27E01 33.7 LYM14 3 12524. 2 D 0.45 9 6.71E- 02 33.1
LYM28 9 12492. 2 G 7.52 1 2.28E01 14.5 LYM53 11841. 1 D 0.46 2 7.65E02 34.1
LYM16 2 12231. 1 G 7.97 6 2.31E01 21.4 LYM14 8 12174. 1 D 0.53 7 8.03E02 55.9
LYM11 3 12444. 4 G 8.06 6 2.38E01 22.8 LYM29 0 12502. 4 D 0.44 4 8.80E02 28.8
LYM13 0 12332. 2 G 8.4 2.46E01 27.9 LYM10 5 12294. 3 D 0.40 1 9.08E02 16.3
303
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 11744. 5 G 7.02 5 2.46E01 6.9 LYM11 9 12462. 1 D 0.50 1 1.14E01 45.4
LYM17 4 12412. 1 G 8.37 2.55E01 27.4 LYM68 11941. 3 D 0.42 9 1.18E01 24.5
LYM9 11632. 2 G 7.50 5 2.64E01 14.2 LYM57 12012. 6 D 0.37 5 1.65E01 8.9
LYM10 0 12133. 3 G 7.44 4 2.66E01 13.3 LYM13 7 12151. 1 D 0.42 7 1.68E01 23.9
LYM15 2 12372. 2 G 7.52 2.67E01 14.5 LYM30 11913. 5 D 0.41 1 1.70E01 19.2
LYM11 9 12461. 4 G 8.26 4 2.68E01 25.8 LYM43 11791. 4 D 0.41 7 1.74E01 21.1
LYM14 0 12262. 3 G 8.23 2 2.72E01 25.3 LYM11 1 12252. 2 D 0.65 8 1.79E01 90.8
LYM14 0 12264. 1 G 8.75 3 2.84E01 33.2 LYM13 8 12561. 3 D 0.45 2 2.37E01 31.3
LYM14 8 12172. 1 G 8.29 5 2.85E01 26.3 LYM15 2 12372. 2 D 0.38 1 2.51E01 10.5
LYM13 8 12564. 1 G 7.27 2.88E01 10.7 LYM11 9 12462. 2 D 0.41 7 2.52E01 21.1
LYM14 3 12521. 1 G 7.43 3 2.89E01 13.1 LYM11 1 12254. 4 D 0.39 5 2.69E01 14.7
LYM4 11706. 5 G 7.38 1 2.90E01 12.4 LYM13 7 12154. 5 D 0.40 8 2.69E01 18.3
LYM10 6 12141. 4 G 7.83 6 2.92E01 19.3 LYM11 1 12251. 3 D 0.4 3.04E01 16
LYM10 2 12222. 6 G 7.60 8 2.95E01 15.8 LYM30 11912. 6 D 0.42 4 3.16E01 22.9
LYM2 11693. 3 G 7.68 3.07E01 16.9 LYM62 12021. 1 D 0.42 3.20E01 22
LYM10 6 12142. 2 G 8.08 5 3.09E01 23.1 LYM26 8 12481. 1 D 0.39 5 3.24E01 14.6
LYM11 9 12461. 1 G 8.06 1 3.13E01 22.7 LYM43 11792. 2 D 0.38 6 3.28E01 12
LYM14 8 12174. 2 G 7.99 7 3.17E01 21.7 LYM13 0 12331. 3 D 0.36 4 3.67E01 5.8
LYM10 5 12297. 1 G 7.58 9 3.25E01 15.5 LYM13 7 12153. 1 D 0.39 4 3.68E01 14.4
LYM10 11744. 1 G 8.49 4 3.37E01 29.3 LYM68 11942. 2 D 0.38 2 3.96E01 11
LYM29 0 12501. 3 G 8.09 8 3.38E01 23.3 LYM68 11943. 2 D 0.40 6 4.05E01 17.7
LYM2 11695. 1 G 7.38 2 3.44E01 12.4 LYM17 2 12301. 2 D 0.41 2 4.21E01 19.4
LYM9 11633. 7 G 7.29 6 3.48E01 11.1 LYM53 11844. 2 D 0.41 4 4.32E01 20.1
LYM17 4 12414. 2 G 7.92 2 3.51E01 20.6 LYM51 11893. 4 D 0.45 4.63E01 30.7
LYM13 11771. 6 G 7.03 5 3.52E01 7.1 LYM11 9 12461. 1 D 0.48 6 4.65E01 41
LYM3 12041. 1 G 8.12 9 3.75E01 23.7 LYM10 5 12295. 2 D 0.37 9 4.68E01 10
304
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM19 11751. 5 G 7.91 1 3.82E01 20.4 LYM51 11893. 2 D 0.36 8 4.81E01 6.8
LYM15 11614. 3 G 7.80 7 3.82E01 18.8 LYM15 2 12376. 1 D 0.39 4 4.85E01 14.5
LYM1 11604. 4 G 7.12 2 3.96E01 8.4 LYM13 4 12312. 4 D 0.36 9 4.91E01 7.2
LYM13 7 12152. 1 G 8.26 1 4.00E01 25.7 LYM51 11894. 2 D 0.36 5.02E01 4.4
LYM21 11674. 1 G 6.88 2 4.03E01 4.8 LYM15 2 12372. 1 D 0.43 5.13E- 01 24.8
LYM13 7 12151. 1 G 7.90 1 4.07E01 20.3 LYM62 12022. 1 D 0.37 3 5.37E01 8.1
LYM16 2 12234. 3 G 8.00 4 4.22E01 21.8 LYM11 1 12254. 3 D 0.44 6 5.43E01 29.5
LYM13 8 12561. 3 G 6.87 4.25E01 4.6 LYM10 0 12131. 3 D 0.35 7 5.49E01 3.5
LYM28 9 12491. 1 G 7.20 2 4.30E01 9.6 LYM14 3 12524. 7 D 0.45 5.61E- 01 30.6
LYM12 9 12573. 5 G 7.19 8 4.45E01 9.6 LYM29 0 12502. 2 D 0.40 1 5.62E01 16.4
LYM13 2 12276. 1 G 7.23 2 4.45E01 10.1 LYM14 12051. 4 D 0.36 5 5.63E01 6
LYM10 11741. 2 G 7.63 3 4.60E01 16.2 LYM67 11783. 5 D 0.38 6 6.06E01 12
LYM2 11691. 2 G 7.39 6 4.69E01 12.6 LYM43 11793. 2 D 0.37 5 6.13E- 01 8.9
LYM17 11684. 5 G 7.52 7 4.73E01 14.6 LYM30 11912. 7 D 0.35 9 6.25E01 4.1
LYM11 1 12254. 3 G 7.47 4 4.74E01 13.8 LYM10 0 12133. 3 D 0.35 6 6.28E01 3.4
LYM15 3 12324. 2 G 7.35 1 4.78E01 11.9 LYM11 9 12461. 4 D 0.37 6 6.48E01 9.1
LYM17 11684. 4 G 7.29 4.79E01 11 LYM68 11941. 4 D 0.35 3 6.66E01 2.5
LYM11 9 12462. 2 G 6.94 1 4.86E01 5.6 LYM10 0 12134. 1 D 0.36 3 6.77E01 5.5
LYM15 2 12371. 2 G 7.56 5 4.94E01 15.2 LYM29 0 12501. 3 D 0.36 2 7.05E01 5.2
LYM16 11623. 5 G 7.01 1 4.96E01 6.7 LYM95 12124. 4 D 0.35 2 7.39E01 2.1
LYM14 1 12404. 3 G 7.03 6 5.07E01 7.1 LYM26 11824. 6 D 0.36 2 7.57E01 5
LYM21 11673. 1 G 8.61 7 5.09E01 31.2 LYM14 3 12521. 2 D 0.35 1 7.58E01 1.8
LYM10 6 12142. 1 G 7.44 8 5.21E- 01 13.4 LYM13 8 12562. 1 D 0.36 3 7.64E01 5.3
LYM21 11671. 2 G 9.05 8 5.24E01 37.9 LYM13 2 12275. 1 D 0.35 1 7.77E01 2
LYM3 12043. 2 G 8.68 8 5.30E01 32.2 LYM13 2 12276. 1 D 0.35 2 7.92E01 2.1
LYM14 1 12402. 4 G 7.38 4 5.30E01 12.4 LYM25 4 12474. 4 D 0.37 5 7.96E01 9
305
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM11 3 12441. 4 G 7.04 9 5.31E01 7.3 LYM13 2 12271. 4 D 0.35 6 8.08E01 3.4
LYM10 2 12222. 1 G 7.91 7 5.33E01 20.5 LYM13 0 12332. 2 D 0.35 7 8.15E01 3.6
LYM26 8 12483. 2 G 7.79 4 5.34E01 18.6 LYM67 11782. 4 D 0.35 6 8.23E01 3.2
LYM22 11762. 1 G 7.80 1 5.39E01 18.7 LYM53 11842. 4 D 0.36 2 8.38E01 5.2
LYM11 9 12462. 1 G 7.69 2 5.48E01 17.1 LYM51 11891. 1 D 0.34 8 8.52E01 1.1
LYM15 11612. 3 G 7.17 5 5.52E01 9.2 LYM14 8 12173. 1 D 0.34 8 9.01E01 1
LYM10 0 12131. 3 G 7.14 5 5.60E01 8.8 LYM15 2 12373. 1 D 0.35 3 9.14E01 2.6
LYM14 3 12523. 4 G 7.04 6 5.67E01 7.2 LYM16 2 12231. 3 D 0.34 9 9.41E01 1.3
LYM14 8 12174. 1 G 7.40 3 5.77E01 12.7 LYM26 8 12482. 1 D 0.35 9.52E01 1.7
LYM19 11751. 4 G 7.08 4 5.88E01 7.8 LYM66 11954. 4 D 0.34 5 9.97E01 0.1
LYM14 3 12521. 2 G 6.96 2 6.60E01 6 CONTR OL D 0.34 5 0
LYM11 1 12251. 3 G 6.83 2 6.96E01 4 LYM11 1 12252. 2 E 9.68 8 7.00E06 21.3
LYM15 11612. 2 G 6.95 6 6.97E01 5.9 LYM53 11841. 1 E 9.06 3 1.80E04 13.5
LYM16 11623. 2 G 7.05 7.01E01 7.3 LYM57 12013. 5 E 9 2.83E04 12.7
LYM10 5 12297. 2 G 6.78 9 7.14E01 3.3 LYM10 5 12297. 1 E 8.87 5 6.26E04 11.2
LYM11 9 12463. 2 G 6.81 3 7.50E01 3.7 LYM13 8 12561. 1 E 9.5 7.87E04 19
LYM13 7 12151. 2 G 6.99 2 7.65E01 6.4 LYM10 0 12131. 2 E 8.81 3 1.02E03 10.4
LYM26 8 12483. 4 G 6.84 4 7.81E01 4.2 LYM14 8 12174. 1 E 9.25 1.72E03 15.9
LYM26 8 12482. 1 G 6.75 5 8.29E01 2.8 LYM69 11853. 5 E 9.25 1.72E03 15.9
LYM9 11633. 2 G 6.80 3 8.47E01 3.5 LYM14 3 12524. 2 E 8.68 8 2.72E03 8.8
LYM14 1 12404. 2 G 6.78 6 8.53E01 3.3 LYM30 11913. 5 E 8.68 8 2.72E03 8.8
LYM29 0 12502. 4 G 6.64 1 8.59E01 1.1 LYM30 11913. 4 E 8.59 8 4.80E03 7.7
LYM21 11672. 4 G 6.67 8.97E01 1.5 LYM43 11791. 4 E 8.56 3 7.93E03 7.2
LYM12 9 12572. 2 G 6.61 6 9.20E01 0.7 LYM67 11783. 5 E 8.74 1 1.00E02 9.5
LYM13 4 12312. 4 G 6.75 9 9.21E01 2.9 LYM14 0 12264. 1 E 8.5 1.16E02 6.5
LYM22 11764. 1 G 6.64 8 9.44E01 1.2 LYM14 3 12521. 2 E 8.5 1.16E02 6.5
306
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM29 0 12502. 2 G 6.60 7 9.83E01 0.6 LYM43 11791. 5 E 8.75 1.31E02 9.6
LYM 14 8 12173. 1 G 6.58 2 9.90E01 0.2 LYM68 11941. 3 E 8.75 1.31E02 9.6
CONTR OL G 6.57 0 LYM68 11942. 3 E 9.31 3 1.72E02 16.6
LYM 14 3 12524. 7 H 16.0 67 1.30E05 63.3 LYM 11 9 12461. 1 E 9.18 8 2.19E02 15.1
LYM 14 8 12171. 2 H 16.1 14 1.80E05 63.8 LYM 14 3 12524. 7 E 9.18 8 2.19E02 15.1
LYM 13 0 12333. 1 H 14.8 09 6.50E05 50.5 LYM51 11894. 2 E 8.43 8 2.49E02 5.7
LYM 10 11741. 2 H 18.7 1 9.40E05 90.1 LYM95 12124. 4 E 8.43 8 2.49E02 5.7
LYM4 11706. 5 H 14.0 74 2.31E04 43 LYM51 11893. 2 E 9.06 3 2.84E02 13.5
LYM 10 2 12222. 2 H 14.0 87 2.46E04 43.2 LYM30 11913. 3 E 8.93 8 3.78E02 11.9
LYM1 11602. 1 H 13.9 72 2.52E04 42 LYM 14 12052. 4 E 8.5 5.02E02 6.5
LYM 10 5 12293. 1 H 13.8 79 3.34E04 41 LYM29 0 12502. 2 E 8.5 5.02E02 6.5
LYM 10 11744. 1 H 13.8 5 3.39E04 40.8 LYM 13 4 12314. 2 E 8.81 3 5.19E02 10.4
LYM 16 2 12234. 3 H 13.5 67 4.59E04 37.9 LYM 10 5 12294. 2 E 8.31 3 8.12E02 4.1
LYM 14 0 12262. 3 H 12.9 58 1.39E03 31.7 LYM 13 0 12332. 2 E 8.87 5 1.03E01 11.2
LYM 15 11614. 3 H 12.8 9 1.69E03 31 LYM 13 7 12153. 1 E 8.26 8 1.05E01 3.6
LYM 15 2 12372. 2 H 13.5 17 5.83E03 37.4 LYM 16 2 12234. 3 E 8.37 5 1.08E01 4.9
LYM 11 9 12461. 4 H 12.4 16 7.53E03 26.2 LYM29 0 12501. 3 E 8.37 5 1.08E01 4.9
LYM1 11602. 6 H 19.4 77 7.70E03 97.9 LYM62 12022. 1 E 8.37 5 1.08E01 4.9
LYM 13 2 12273. 2 H 12.9 17 1.21E02 31.3 LYM 11 9 12462. 2 E 8.56 3 1.10E01 7.2
LYM 13 0 12334. 1 H 13.0 43 1.44E02 32.5 LYM 17 2 12302. 2 E 8.56 3 1.10E01 7.2
LYM 10 0 12133. 1 H 11.9 96 1.53E02 21.9 LYM 14 8 12172. 1 E 8.25 1.24E01 3.3
LYM 16 2 12231. 3 H 12.2 08 2.21E02 24.1 LYM95 12121. 2 E 8.25 1.24E01 3.3
LYM28 9 12493. 2 H 14.5 44 2.84E02 47.8 LYM 13 0 12331. 3 E 8.75 1.31E01 9.6
LYM 11 9 12463. 2 H 13.3 26 3.16E02 35.4 LYM 13 0 12334. 1 E 8.75 1.31E01 9.6
LYM 17 11684. 4 H 12.3 64 3.64E02 25.7 LYM 13 7 12151. 1 E 9.25 1.43E01 15.9
LYM 14 1 12404. 2 H 11.4 75 3.87E02 16.6 LYM68 11941. 4 E 8.41 1 1.43E01 5.3
307
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM1 11603. 2 H 12.6 74 4.14E02 28.8 LYM 17 0 12453. 2 E 8.95 5 1.60E01 12.2
LYM 13 8 12561. 1 H 16.1 27 4.40E02 63.9 LYM 11 1 12254. 3 E 8.62 5 1.71E01 8
LYM28 9 12493. 6 H 11.2 2 6.44E02 14 LYM 10 0 12134. 1 E 8.43 8 1.72E01 5.7
LYM26 8 12483. 2 H 12.0 16 8.02E02 22.1 LYM 14 12051. 4 E 8.43 8 1.72E01 5.7
LYM 10 2 12221. 1 H 11.1 37 8.39E02 13.2 LYM68 11942. 2 E 8.43 8 1.72E01 5.7
LYM 19 11751. 5 H 13.3 1 8.63E02 35.3 LYM26 8 12482. 3 E 8.81 3 1.79E01 10.4
LYM 13 11771. 6 H 11.5 97 9.59E02 17.9 LYM 10 0 12131. 3 E 8.5 2.31E01 6.5
LYM9 11632. 2 H 11.3 93 1.03E01 15.8 LYM 10 0 12133. 3 E 8.5 2.31E01 6.5
LYM9 11632. 1 H 16.5 55 1.11E01 68.2 LYM 13 8 12566. 1 E 8.5 2.31E01 6.5
LYM1 11604. 4 H 14.5 31 1.12E01 47.7 LYM24 12061. 2 E 8.5 2.31E01 6.5
LYM 14 8 12174. 1 H 14.4 88 1.13E01 47.2 LYM26 11824. 6 E 8.5 2.31E01 6.5
LYM 14 1 12402. 4 H 14.4 02 1.20E01 46.4 LYM25 4 12472. 3 E 8.25 2.39E01 3.3
LYM 10 11742. 2 H 13.9 28 1.24E01 41.5 LYM 10 5 12293. 1 E 8.18 8 2.52E01 2.5
LYM 13 8 12562. 1 H 10.9 15 1.30E01 10.9 LYM51 11891. 1 E 8.18 8 2.52E01 2.5
LYM 19 11753. 1 H 12.6 87 1.39E01 28.9 LYM67 11781. 5 E 8.18 8 2.52E01 2.5
LYM 14 3 12521. 1 H 11.2 54 1.45E01 14.4 LYM29 0 12502. 1 E 8.75 2.56E01 9.6
LYM 13 2 12271. 4 H 12.1 4 1.46E01 23.4 LYM 14 8 12173. 1 E 9 2.70E01 12.7
LYM 11 9 12462. 2 H 17.0 13 1.48E01 72.9 LYM 11 1 12251. 1 E 8.56 3 2.76E01 7.2
LYM 17 4 12411. 2 H 14.0 25 1.60E01 42.5 LYM 11 9 12462. 1 E 8.56 3 2.76E01 7.2
LYM 11 3 12442. 1 H 10.8 41 1.67E01 10.2 LYM 15 2 12372. 1 E 8.56 3 2.76E01 7.2
LYM 15 11612. 2 H 11.8 62 1.76E01 20.5 LYM51 11893. 4 E 8.56 3 2.76E01 7.2
LYM4 11705. 2 H 11.3 3 1.76E01 15.1 LYM 15 2 12372. 2 E 8.31 3 2.80E01 4.1
LYM 19 11754. 1 H 11.7 11 1.84E01 19 LYM 17 2 12301. 2 E 8.31 3 2.80E01 4.1
LYM 12 9 12573. 5 H 10.7 42 2.00E01 9.2 LYM26 8 12483. 2 E 8.31 3 2.80E01 4.1
LYM9 11633. 7 H 12.3 18 2.07E01 25.2 LYM31 11923. 1 E 8.31 3 2.80E01 4.1
LYM2 11692. 3 H 10.8 66 2.22E01 10.4 LYM 13 8 12561. 3 E 8.81 3 2.84E01 10.4
308
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 14 3 12524. 2 H 11.8 56 2.30E01 20.5 LYM31 11923. 4 E 8.81 3 2.84E01 10.4
LYM 13 0 12332. 2 H 13.3 97 2.34E01 36.2 LYM29 0 12504. 1 E 8.83 2.91E01 10.6
LYM 11 9 12462. 1 H 14.4 98 2.51E01 47.3 LYM62 12021. 1 E 8.62 5 3.08E01 8
LYM21 11673. 1 H 11.7 72 2.65E01 19.6 LYM 13 2 12271. 4 E 8.37 5 3.23E01 4.9
LYM 17 4 12414. 3 H 14.9 66 2.87E01 52.1 LYM 13 7 12154. 5 E 8.68 8 3.33E01 8.8
LYM 13 8 12561. 3 H 14.5 29 2.90E01 47.7 LYM68 11943. 2 E 8.68 8 3.33E01 8.8
LYM 14 1 12404. 3 H 12.2 56 2.98E01 24.6 LYM 15 2 12376. 1 E 8.43 8 3.55E01 5.7
LYM 15 11612. 3 H 13.1 03 2.99E01 33.2 LYM29 0 12502. 4 E 8.43 8 3.55E01 5.7
LYM 13 4 12311. 2 H 12.6 8 3.01E01 28.9 LYM31 11922. 3 E 8.43 8 3.55E01 5.7
LYM 15 11611. 3 H 12.5 42 3.17E01 27.5 LYM53 11844. 2 E 8.43 8 3.55E01 5.7
LYM 19 11751. 4 H 13.2 51 3.21E01 34.7 LYM 11 1 12254. 4 E 9.18 8 3.72E01 15.1
LYM 16 2 12231. 1 H 12.6 69 3.42E01 28.8 LYM 15 3 12321. 2 E 8.49 1 3.76E01 6.3
LYM28 9 12491. 4 H 11.3 87 3.46E01 15.7 LYM 15 2 12371. 2 E 8.56 3 3.96E01 7.2
LYM 17 11684. 5 H 10.5 15 3.52E01 6.9 LYM 10 5 12295. 2 E 8.62 5 4.09E01 8
LYM 15 2 12371. 2 H 12.3 07 3.54E01 25.1 LYM30 11912. 6 E 8.31 3 4.71E01 4.1
LYM21 11671. 2 H 12.0 4 3.73E01 22.4 LYM51 11892. 1 E 8.31 3 4.71E01 4.1
LYM29 0 12501. 3 H 11.4 64 3.76E01 16.5 LYM57 12012. 2 E 8.31 3 4.71E01 4.1
LYM 16 11624. 4 H 10.4 69 3.83E01 6.4 LYM 13 8 12562. 1 E 8.18 8 4.71E01 2.5
LYM 14 1 12404. 4 H 12.4 83 3.95E01 26.9 LYM 14 0 12261. 4 E 8.18 8 4.71E01 2.5
LYM28 9 12491. 1 H 13.3 58 3.97E01 35.8 LYM 16 2 12231. 1 E 8.18 8 4.71E01 2.5
LYM 17 11683. 1 H 10.4 48 4.15E01 6.2 LYM 14 0 12262. 3 E 8.37 5 4.75E01 4.9
LYM 14 8 12173. 1 H 12.8 42 4.17E01 30.5 LYM 14 8 12171. 2 E 8.5 4.82E01 6.5
LYM 16 2 12234. 4 H 14.1 45 4.21E01 43.7 LYM30 11912. 7 E 8.56 3 4.85E01 7.2
LYM 13 11772. 1 H 10.8 15 4.47E01 9.9 LYM26 8 12481. 1 E 8.62 5 4.87E01 8
LYM 17 4 12411. 3 H 11.9 25 4.47E01 21.2 LYM 10 0 12133. 1 E 8.12 5 5.09E01 1.8
LYM26 8 12483. 4 H 11.4 76 4.61E01 16.6 LYM 13 7 12152. 1 E 8.12 5 5.09E01 1.8
309
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 4 12412. 1 H 11.5 03 4.65E01 16.9 LYM 14 12052. 5 E 8.12 5 5.09E01 1.8
LYM 10 2 12222. 3 H 12.8 38 4.66E01 30.5 LYM26 11824. 5 E 8.12 5 5.09E01 1.8
LYM 11 1 12251. 1 H 11.9 87 4.83E01 21.8 LYM 13 2 12275. 1 E 8.56 3 5.52E01 7.2
LYM21 11672. 4 H 11.7 25 4.84E01 19.2 LYM53 11842. 4 E 8.5 5.58E01 6.5
LYM26 8 12482. 3 H 10.7 87 4.91E01 9.6 LYM57 12012. 6 E 8.25 6.05E01 3.3
LYM 17 4 12414. 2 H 10.2 74 5.09E01 4.4 LYM69 11853. 4 E 8.5 6.15E- 01 6.5
LYM 10 11744. 5 H 11.5 27 5.13E- 01 17.1 LYM 13 2 12276. 1 E 8.24 1 6.23E01 3.2
LYM29 0 12502. 4 H 11.7 49 5.22E01 19.4 LYM 10 5 12294. 3 E 8.18 8 6.34E01 2.5
LYM 17 11682. 1 H 12.2 86 5.68E01 24.9 LYM69 11852. 4 E 8.18 8 6.34E01 2.5
LYM 10 5 12294. 2 H 12.2 91 6.34E01 24.9 LYM95 12124. 5 E 8.06 3 6.47E01 1
LYM 13 7 12153. 1 H 10.9 38 6.48E01 11.2 LYM95 12124. 6 E 8.12 5 6.82E01 1.8
LYM 17 11681. 4 H 10.4 05 6.58E01 5.7 LYM43 11793. 2 E 8.43 8 7.13E- 01 5.7
LYM 10 11742. 1 H 11.3 48 7.13E- 01 15.3 LYM 13 0 12332. 1 E 8.37 5 7.33E01 4.9
LYM 11 1 12252. 2 H 11.4 94 7.14E- 01 16.8 LYM 14 0 12261. 1 E 8.25 7.45E01 3.3
LYM 10 0 12131. 3 H 10.8 07 7.19E01 9.8 LYM67 11782. 6 E 8.06 3 7.71E01 1
LYM 14 0 12261. 4 H 10.2 94 7.56E01 4.6 LYM 14 12051. 1 E 8.12 5 7.75E01 1.8
LYM9 11633. 2 H 10.5 62 7.61E- 01 7.3 LYM25 4 12474. 4 E 8.18 8 7.80E01 2.5
LYM 16 2 12233. 2 H 10.5 24 7.66E01 6.9 LYM26 8 12482. 1 E 8.25 9 8.09E01 3.4
LYM 13 2 12275. 1 H 10.0 29 7.80E01 1.9 LYM69 11854. 2 E 8.10 7 8.10E- 01 1.5
LYM 14 8 12172. 1 H 10.7 95 8.12E- 01 9.7 LYM 13 0 12333. 1 E 8.06 3 8.49E01 1
LYM26 8 12482. 1 H 10.4 8 8.16E- 01 6.5 LYM 13 8 12564. 1 E 8.06 3 8.49E01 1
LYM29 0 12502. 1 H 10.4 11 8.38E01 5.8 LYM 17 0 12452. 3 E 8.06 3 8.49E01 1
LYM22 11762. 1 H 10.1 61 8.39E01 3.3 LYM 13 4 12311. 2 E 8.12 5 8.60E01 1.8
LYM1 11601. 1 H 10.2 4 8.44E01 4.1 LYM62 12022. 2 E 8.12 5 8.60E01 1.8
LYM2 11693. 3 H 10.0 26 8.49E01 1.9 LYM66 11954. 4 E 8.12 5 8.82E01 1.8
LYM 14 3 12521. 2 H 9.99 5 9.08E01 1.6 LYM3 12043. 1 E 8.06 3 9.13E01 1
310
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 13 11771. 9 H 9.91 8 9.11E01 0.8 LYM 15 2 12373. 1 E 8 9.40E01 0.2
LYM29 0 12504. 1 H 10.0 34 9.18E01 2 LYM 15 3 12322. 1 E 8 9.63E01 0.2
LYM 14 3 12523. 4 H 10.0 41 9.29E01 2 LYM31 11924. 4 E 8 9.80E01 0.2
LYM 10 2 12222. 6 H 10.0 68 9.54E01 2.3 CONTR OL E 7.98 4 0
LYM 11 1 12254. 4 H 9.86 5 9.76E01 0.3 LYM 13 7 12151. 1 F 0.63 6 3.25E04 50
CONTR OL H 9.84 0 LYM57 12013. 5 F 0.60 5 7.25E04 42.7
LYM1 11602. 6 J 0.05 2.90E05 82.4 LYM 13 4 12314. 2 F 0.60 5 7.28E04 42.7
LYM 10 11741. 2 J 0.04 7 2.61E04 69.6 LYM 13 8 12561. 3 F 0.60 3 8.37E04 42.2
LYM 14 8 12171. 2 J 0.04 4 1.16E- 03 57.9 LYM51 11893. 2 F 0.60 7 1.97E03 43
LYM 14 3 12524. 7 J 0.04 3 1.72E- 03 56 LYM26 8 12482. 3 F 0.57 6 2.18E03 35.7
LYM 11 9 12462. 2 J 0.04 4 2.18E03 60.3 LYM68 11942. 3 F 0.57 2.74E03 34.3
LYM9 11632. 1 J 0.04 2 3.46E03 51.9 LYM 14 8 12174. 1 F 0.79 5 3.37E03 87.5
LYM 13 8 12561. 1 J 0.03 9 1.28E02 42.5 LYM29 0 12502. 4 F 0.56 3 3.59E03 32.8
LYM1 11604. 4 J 0.03 9 1.45E02 41.6 LYM69 11853. 5 F 0.63 4.12E03 48.5
LYM1 11602. 1 J 0.03 9 1.68E02 41.3 LYM68 11941. 3 F 0.67 6 4.18E03 59.3
LYM 13 8 12561. 3 J 0.03 8 2.14E02 39.2 LYM 13 7 12153. 1 F 0.54 4 7.80E03 28.2
LYM28 9 12493. 2 J 0.03 8 3.13E- 02 38 LYM 13 7 12154. 5 F 0.58 4 1.03E- 02 37.8
LYM 10 11742. 2 J 0.03 8 3.37E02 35.8 LYM 14 3 12521. 2 F 0.54 1 1.35E02 27.5
LYM 17 4 12414. 3 J 0.03 8 3.60E02 37.6 LYM43 11791. 5 F 0.55 2 1.40E02 30.2
LYM 16 2 12234. 4 J 0.03 9 3.75E02 39.7 LYM30 11913. 4 F 0.57 8 1.86E02 36.3
LYM 13 0 12333. 1 J 0.03 7 4.04E02 34.6 LYM30 11913. 5 F 0.53 7 1.99E02 26.7
LYM 10 2 12222. 2 J 0.03 7 4.21E02 33.3 LYM29 0 12501. 3 F 0.51 6 2.54E02 21.7
LYM 17 4 12411. 2 J 0.03 7 4.72E02 33.9 LYM53 11841. 1 F 0.63 2 2.58E02 49.1
LYM 16 2 12234. 3 J 0.03 7 4.72E02 34 LYM 17 0 12453. 2 F 0.51 1 3.14E- 02 20.5
LYM 15 11614. 3 J 0.03 7 4.86E02 32.3 LYM 14 0 12264. 1 F 0.50 8 3.58E02 19.9
LYM 14 8 12174. 1 J 0.03 6 5.71E- 02 30.8 LYM30 11913. 3 F 0.51 3 4.45E02 20.9
311
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 5 12293. 1 J 0.03 6 5.84E02 31.5 LYM 10 5 12297. 1 F 0.50 3 4.63E02 18.6
LYM 14 0 12262. 3 J 0.03 6 6.17E02 30 LYM62 12022. 1 F 0.50 1 5.09E02 18.2
LYM 11 9 12462. 1 J 0.03 6 6.65E02 30.3 LYM31 11923. 4 F 0.57 4 5.51E02 35.4
LYM 10 11744. 1 J 0.03 6 7.19E02 29.9 LYM68 11943. 2 F 0.60 4 5.83E02 42.4
LYM 19 11751. 5 J 0.03 6 7.62E02 29.3 LYM 15 2 12372. 2 F 0.51 7 5.83E02 21.9
LYM 14 1 12402. 4 J 0.03 6 7.71E02 30.2 LYM 10 5 12295. 2 F 0.55 2 6.04E02 30.1
LYM 15 2 12372. 2 J 0.03 5 9.41E02 27.8 LYM 13 7 12152. 1 F 0.50 4 6.15E02 18.8
LYM 13 4 12311. 2 J 0.03 6 9.65E02 28.5 LYM 13 8 12561. 1 F 0.64 4 7.28E02 51.8
LYM 19 11751. 4 J 0.03 6 9.82E02 28.8 LYM62 12021. 1 F 0.50 4 8.04E02 18.8
LYM 15 11611. 3 J 0.03 6 1.02E01 30.1 LYM30 11912. 6 F 0.52 1 9.04E02 22.9
LYM 16 2 12231. 3 J 0.03 5 1.13E01 25.7 LYM 11 1 12252. 2 F 0.81 7 9.40E02 92.5
LYM 15 11612. 3 J 0.03 5 1.21E01 26.5 LYM 11 9 12462. 2 F 0.51 3 9.81E02 21
LYM 14 8 12173. 1 J 0.03 5 1.32E01 26.4 LYM29 0 12502. 2 F 0.52 4 1.07E01 23.6
LYM1 11603. 2 J 0.03 4 1.32E01 24.2 LYM 10 0 12131. 2 F 0.57 5 1.17E01 35.6
LYM 17 11684. 4 J 0.03 4 1.34E01 24 LYM 14 12051. 1 F 0.48 8 1.25E01 15.1
LYM 17 4 12412. 1 J 0.03 5 1.37E01 26.8 LYM29 0 12502. 1 F 0.48 1.39E01 13.1
LYM 16 2 12231. 1 J 0.03 4 1.41E01 24.4 LYM 14 3 12524. 2 F 0.59 4 1.41E01 40
LYM 13 2 12273. 2 J 0.03 4 1.52E01 22.6 LYM 13 8 12562. 1 F 0.51 2 1.65E01 20.7
LYM 13 2 12271. 4 J 0.03 4 1.55E01 23.2 LYM 13 8 12564. 1 F 0.47 2 1.84E01 11.3
LYM4 11705. 2 J 0.03 4 1.60E01 23.1 LYM 17 2 12301. 2 F 0.51 1 1.88E01 20.4
LYM 19 11753. 1 J 0.03 4 1.68E01 21.9 LYM 15 2 12376. 1 F 0.52 8 1.96E01 24.5
LYM 11 9 12461. 4 J 0.03 4 1.68E01 22.2 LYM 14 12052. 4 F 0.53 2 1.98E01 25.5
LYM28 9 12491. 1 J 0.03 4 1.81E01 21.7 LYM 11 9 12462. 1 F 0.56 7 2.22E01 33.7
LYM 11 9 12463. 2 J 0.03 4 1.84E01 21.5 LYM 10 0 12134. 1 F 0.50 8 2.22E01 19.7
LYM 14 1 12404. 3 J 0.03 3 2.00E01 21 LYM 10 5 12294. 3 F 0.51 6 2.28E01 21.6
LYM 13 0 12332. 2 J 0.03 4 2.03E01 21.2 LYM 13 2 12271. 4 F 0.5 2.30E01 17.9
312
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 14 1 12404. 4 J 0.03 3 2.07E01 20.4 LYM51 11891. 1 F 0.47 1 2.32E01 11
LYM4 11706. 5 J 0.03 3 2.13E01 19.8 LYM67 11783. 5 F 0.54 1 2.36E01 27.6
LYM9 11633. 7 J 0.03 3 2.16E01 21 LYM26 11824. 6 F 0.51 6 2.42E01 21.6
LYM 15 2 12371. 2 J 0.03 3 2.34E01 19.7 LYM26 8 12481. 1 F 0.52 2 2.44E01 23
LYM 17 11682. 1 J 0.03 3 2.45E01 20.4 LYM 14 12051. 4 F 0.46 7 2.48E01 10.2
LYM21 11673. 1 J 0.03 3 2.57E01 18.1 LYM 14 8 12171. 2 F 0.46 8 2.60E01 10.4
LYM21 11672. 4 J 0.03 3 2.70E01 18.7 LYM 13 0 12332. 2 F 0.46 6 2.86E01 9.9
LYM 15 11612. 2 J 0.03 2 2.77E01 17.4 LYM 10 0 12133. 3 F 0.47 4 2.88E01 11.8
LYM9 11632. 2 J 0.03 2 2.83E01 17.2 LYM53 11844. 2 F 0.52 2 3.01E- 01 23.1
LYM 14 3 12521. 1 J 0.03 2 2.83E01 17.1 LYM51 11893. 4 F 0.61 5 3.06E01 45.1
LYM 14 3 12524. 2 J 0.03 2 2.84E01 17.3 LYM 15 2 12372. 1 F 0.62 5 3.14E- 01 47.3
LYM 10 2 12222. 3 J 0.03 3 2.90E01 18.6 LYM 11 1 12251. 1 F 0.46 8 3.26E01 10.4
LYM 10 11744. 5 J 0.03 2 3.16E- 01 16.9 LYM 16 2 12231. 3 F 0.47 3.29E01 10.8
LYM 13 11771. 6 J 0.03 2 3.27E01 16.2 LYM 11 9 12461. 1 F 0.64 9 3.29E01 52.9
LYM 11 1 12251. 1 J 0.03 2 3.47E01 16.1 LYM 14 3 12524. 7 F 0.58 3 3.35E01 37.3
LYM 10 5 12294. 2 J 0.03 2 3.57E01 17.1 LYM 13 0 12331. 3 F 0.48 3.48E01 13.2
LYM 17 4 12411. 3 J 0.03 2 3.66E01 14.4 LYM 13 0 12334. 1 F 0.47 6 3.58E01 12.3
LYM 19 11754. 1 J 0.03 2 3.67E01 14.1 LYM 13 2 12275. 1 F 0.45 6 3.63E01 7.5
LYM26 8 12483. 2 J 0.03 1 3.73E01 13.8 LYM 11 1 12254. 4 F 0.55 3 3.74E01 30.4
LYM26 8 12483. 4 J 0.03 2 3.80E01 15 LYM 11 1 12254. 3 F 0.60 3 3.81E- 01 42.1
LYM29 0 12502. 4 J 0.03 2 3.97E01 14.2 LYM 14 8 12173. 1 F 0.51 3 4.04E01 20.9
LYM28 9 12493. 6 J 0.03 1 4.46E01 11.8 LYM68 11942. 2 F 0.48 9 4.14E01 15.3
LYM 14 1 12404. 2 J 0.03 1 4.48E01 12.2 LYM57 12012. 2 F 0.46 2 4.14E01 9
LYM 13 11772. 1 J 0.03 1 4.52E01 12.1 LYM57 12012. 6 F 0.46 2 4.28E01 9
LYM21 11671. 2 J 0.03 1 4.72E01 11.1 LYM 10 0 12131. 3 F 0.48 2 4.31E01 13.6
LYM 12 9 12573. 5 J 0.03 1 4.89E01 10.8 LYM 15 3 12321. 2 F 0.50 7 4.37E01 19.5
313
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 11681. 4 J 0.03 1 4.90E01 10.8 LYM 16 2 12234. 3 F 0.45 6 4.41E01 7.6
LYM 14 3 12521. 2 J 0.03 5.23E01 10.1 LYM24 12061. 2 F 0.51 5 4.44E01 21.5
LYM 14 8 12172. 1 J 0.03 1 5.23E01 11.5 LYM 13 4 12312. 4 F 0.46 7 4.57E01 10.2
LYM28 9 12491. 4 J 0.03 5.61E01 9.4 LYM68 11941. 4 F 0.46 5 4.72E01 9.6
LYM 10 0 12133. 1 J 0.03 5.63E01 9 LYM30 11912. 7 F 0.48 5 4.92E01 14.2
LYM 10 2 12221. 1 J 0.03 5.66E01 9.1 LYM 13 2 12276. 1 F 0.51 3 4.98E01 21
LYM 10 0 12131. 3 J 0.03 5.87E01 9.1 LYM95 12124. 4 F 0.45 4 5.03E01 7.1
LYM2 11692. 3 J 0.03 5.92E01 8.4 LYM 14 8 12174. 2 F 0.46 7 5.95E01 10.2
LYM 16 11624. 4 J 0.03 6.06E01 8 LYM43 11791. 4 F 0.48 8 5.95E01 15.1
LYM29 0 12501. 3 J 0.03 6.10E01 8.3 LYM 15 2 12371. 2 F 0.47 6 6.25E01 12.3
LYM 10 11742. 1 J 0.03 6.16E01 8.9 LYM66 11954. 4 F 0.50 1 6.29E01 18.2
LYM 13 8 12562. 1 J 0.03 6.36E01 7.3 LYM67 11781. 5 F 0.44 6 6.32E01 5.3
LYM 17 11684. 5 J 0.03 6.40E01 7.2 LYM67 11782. 6 F 0.44 2 6.43E01 4.3
LYM 11 1 12252. 2 J 0.03 6.46E01 8.2 LYM 14 0 12261. 1 F 0.46 5 6.49E01 9.6
LYM26 8 12482. 1 J 0.03 6.52E01 7.8 LYM 17 2 12302. 2 F 0.47 1 6.57E01 11
LYM 17 11683. 1 J 0.02 9 6.68E01 6.6 LYM31 11922. 3 F 0.47 6.61E01 10.8
LYM1 11601. 1 J 0.02 9 6.76E01 6.7 LYM 14 12052. 5 F 0.43 9 6.69E01 3.4
LYM 13 7 12153. 1 J 0.02 9 6.95E01 6.6 LYM51 11894. 2 F 0.44 6.79E01 3.7
LYM 16 2 12233. 2 J 0.02 9 6.97E01 6.4 LYM 17 0 12452. 3 F 0.44 1 6.91E01 3.9
LYM26 8 12482. 3 J 0.02 9 7.03E01 6 LYM 15 3 12322. 1 F 0.48 5 6.92E01 14.4
LYM 13 0 12334. 1 J 0.02 9 7.32E01 5.2 LYM62 12022. 2 F 0.46 4 7.01E01 9.4
LYM22 11762. 1 J 0.02 9 8.38E01 3.2 LYM 10 5 12293. 1 F 0.44 8 7.04E01 5.7
LYM 14 0 12261. 4 J 0.02 8 8.73E01 2.6 LYM31 11923. 1 F 0.45 1 7.09E01 6.4
LYM 14 3 12523. 4 J 0.02 8 9.21E01 1.6 LYM69 11854. 2 F 0.44 7 7.13E01 5.5
LYM 11 1 12254. 4 J 0.02 8 9.41E01 1.1 LYM26 8 12482. 1 F 0.48 6 7.27E01 14.5
LYM2 11693. 3 J 0.02 8 9.79E01 0.4 LYM 11 9 12461. 4 F 0.44 4 7.34E01 4.8
314
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 2 12222. 6 J 0.02 8 9.79E01 0.5 LYM26 8 12483. 2 F 0.46 1 7.41E- 01 8.6
LYM11 3 12442. 1 J 0.02 8 9.82E01 0.4 LYM11 1 12251. 3 F 0.45 2 7.42E01 6.5
CONTR OL J 0.02 8 0 LYM16 2 12231. 1 F 0.45 7.55E01 6.2
LYM11 9 12462. 2 K 0.62 7 1.12E02 31.8 LYM10 0 12133. 1 F 0.44 6 7.57E01 5.3
LYM14 8 12174. 1 K 0.61 7 2.05E02 29.8 LYM26 11824. 5 F 0.44 2 7.76E01 4.1
LYM26 8 12483. 2 K 0.60 7 2.07E02 27.7 LYM15 2 12373. 1 F 0.46 7.98E01 8.4
LYM26 8 12482. 3 K 0.61 2 2.74E02 28.6 LYM69 11853. 4 F 0.45 5 8.07E01 7.3
LYM10 2 12222. 6 K 0.61 6 3.04E02 29.6 LYM25 4 12474. 4 F 0.46 6 8.11E- 01 9.9
LYM4 11706. 5 K 0.60 3 3.66E02 26.7 LYM17 2 12301. 3 F 0.43 9 8.30E01 3.6
LYM10 2 12222. 2 K 0.60 8 4.08E02 27.9 LYM95 12124. 5 F 0.43 8.69E01 1.4
LYM14 3 12524. 7 K 0.61 4 4.15E02 29.2 LYM13 0 12333. 1 F 0.43 8 8.73E01 3.2
LYM15 11611. 3 K 0.59 4.46E02 24.1 LYM14 8 12172. 1 F 0.43 1 8.75E01 1.7
LYM14 0 12261. 1 K 0.58 5 4.64E02 22.9 LYM53 11842. 4 F 0.44 9 8.83E01 5.8
LYM11 9 12461. 4 K 0.58 9 4.73E02 23.8 LYM43 11793. 2 F 0.44 6 9.06E01 5.1
LYM21 11674. 5 K 0.58 1 5.23E02 22.2 LYM14 0 12262. 3 F 0.43 3 9.11E01 2.2
LYM13 2 12271. 4 K 0.58 4 5.49E02 22.8 LYM25 4 12472. 3 F 0.42 9 9.16E01 1.1
LYM13 0 12332. 2 K 0.58 6 6.37E02 23.3 LYM13 7 12151. 2 F 0.43 6 9.21E01 2.7
LYM10 0 12131. 2 K 0.58 4 7.48E02 22.8 CONTR OL F 0.42 4 0
LYM10 0 12133. 1 K 0.58 3 8.16E02 22.7 LYM14 8 12174. 1 G 10.5 31 6.00E05 46.2
LYM13 8 12561. 1 K 0.58 2 9.29E02 22.5 LYM10 5 12297. 1 G 9.40 6 9.40E05 30.6
LYM14 1 12402. 4 K 0.57 8 9.33E02 21.5 LYM13 7 12154. 5 G 9.27 2 1.82E- 04 28.7
LYM10 11741. 2 K 0.57 2 9.81E02 20.4 LYM29 0 12502. 1 G 9.12 1 2.85E04 26.6
LYM10 11742. 2 K 0.57 1 1.03E- 01 20 LYM13 2 12271. 4 G 8.89 9 5.40E04 23.5
LYM15 2 12372. 2 K 0.57 2 1.06E- 01 20.2 LYM11 1 12252. 2 G 8.92 3 5.44E04 23.9
LYM10 5 12293. 1 K 0.56 4 1.39E- 01 18.6 LYM29 0 12502. 2 G 8.83 2 7.44E04 22.6
LYM17 11681. 4 K 0.56 6 1.40E- 01 19.1 LYM14 3 12524. 2 G 8.77 9.08E04 21.7
315
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 13 7 12153. 1 K 0.56 4 1.47E01 18.5 LYM26 8 12482. 3 G 8.97 3 1.05E03 24.6
LYM21 11671. 2 K 0.56 9 1.48E01 19.6 LYM67 11781. 5 G 8.53 4 2.64E03 18.5
LYM 10 11742. 1 K 0.56 4 1.50E01 18.6 LYM 13 8 12561. 1 G 10.3 11 3.08E03 43.1
LYM28 9 12491. 4 K 0.54 9 1.64E01 15.5 LYM 13 8 12561. 3 G 9.90 1 3.55E03 37.4
LYM 15 3 12321. 2 K 0.55 3 1.68E01 16.3 LYM57 12013. 5 G 9.58 3 3.82E03 33
LYM28 9 12491. 1 K 0.57 3 1.78E01 20.5 LYM 14 3 12524. 7 G 8.42 2 3.87E03 16.9
LYM 17 4 12411. 2 K 0.56 1.82E01 17.7 LYM29 0 12501. 3 G 8.47 4 4.45E03 17.6
LYM22 11764. 1 K 0.54 7 1.85E01 15 LYM 15 3 12322. 1 G 8.56 6 4.91E03 18.9
LYM28 9 12493. 2 K 0.54 9 1.87E01 15.5 LYM67 11783. 5 G 8.89 6 8.15E03 23.5
LYM 10 6 12142. 2 K 0.54 7 1.97E01 15 LYM 14 0 12261. 1 G 8.62 4 9.34E03 19.7
LYM 17 4 12412. 1 K 0.55 7 2.01E01 17.2 LYM43 11791. 5 G 8.22 7 1.13E02 14.2
LYM 17 4 12414. 2 K 0.54 9 2.07E01 15.5 LYM26 8 12483. 2 G 8.17 3 1.25E02 13.4
LYM 10 5 12297. 1 K 0.55 2.08E01 15.6 LYM 11 1 12251. 1 G 8.20 6 1.25E02 13.9
LYM 15 2 12373. 1 K 0.54 2 2.24E01 14 LYM 10 0 12134. 1 G 8.49 3 1.46E02 17.9
LYM22 11764. 7 K 0.54 5 2.25E01 14.5 LYM30 11913. 5 G 9.10 6 1.46E02 26.4
LYM 11 9 12462. 1 K 0.55 5 2.28E01 16.8 LYM 13 4 12311. 2 G 8.00 5 2.81E02 11.1
LYM1 11602. 6 K 0.56 1 2.30E01 18 LYM 13 0 12334. 1 G 8.53 9 3.38E02 18.5
LYM 13 0 12334. 1 K 0.55 9 2.36E01 17.5 LYM 16 2 12231. 1 G 9.30 8 3.90E02 29.2
LYM 13 8 12564. 1 K 0.54 6 2.43E01 14.8 LYM30 11912. 7 G 7.96 2 4.08E02 10.5
LYM26 8 12481. 1 K 0.53 6 2.59E01 12.6 LYM68 11941. 3 G 10.2 35 4.13E02 42.1
LYM3 12041. 2 K 0.55 1 2.68E01 15.9 LYM 10 0 12133. 1 G 8.26 4 5.83E02 14.7
LYM 10 2 12222. 3 K 0.54 6 2.81E01 14.8 LYM 15 3 12324. 1 G 9.05 9 5.91E02 25.7
LYM 16 2 12234. 3 K 0.54 1 2.97E01 13.9 LYM 10 0 12131. 3 G 7.84 5 6.29E02 8.9
LYM 16 2 12234. 4 K 0.54 3.06E01 13.6 LYM26 8 12483. 4 G 8.17 6 6.43E02 13.5
LYM 14 8 12173. 1 K 0.54 7 3.18E01 15.1 LYM31 11923. 4 G 8.75 7.07E02 21.5
LYM29 0 12501. 3 K 0.53 3 3.19E01 12 LYM57 12012. 2 G 8.17 4 8.06E02 13.5
316
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11632. 1 K 0.53 7 3.25E01 13 LYM17 4 12411. 3 G 9.04 6 8.44E02 25.6
LYM11 3 12442. 1 K 0.52 7 3.29E01 10.9 LYM53 11843. 2 G 7.79 6 8.61E02 8.2
LYM19 11754. 1 K 0.52 7 3.47E01 10.8 LYM13 7 12151. 1 G 10.0 24 8.70E02 39.1
LYM11 1 12251. 1 K 0.53 2 3.60E01 11.9 LYM11 1 12254. 3 G 8.78 6 9.05E02 22
LYM11 9 12463. 2 K 0.53 3 3.81E- 01 12.1 LYM95 12121. 2 G 7.75 2 1.05E01 7.6
LYM15 11614. 3 K 0.52 5 3.92E01 10.4 LYM16 2 12234. 4 G 8.33 7 1.12E01 15.7
LYM14 0 12264. 1 K 0.52 4 3.93E01 10.2 LYM30 11913. 3 G 8.02 4 1.18E01 11.4
LYM19 11753. 1 K 0.52 3 4.08E01 10 LYM10 5 12295. 2 G 8.79 8 1.36E01 22.1
LYM14 1 12404. 3 K 0.52 5 4.11E01 10.3 LYM3 12042. 1 G 7.69 7 1.37E- 01 6.8
LYM10 11744. 1 K 0.52 2 4.16E01 9.8 LYM13 2 12275. 1 G 7.68 6 1.44E01 6.7
LYM13 0 12331. 3 K 0.52 3 4.27E01 9.9 LYM68 11942. 2 G 8.30 5 1.48E01 15.3
LYM28 9 12493. 6 K 0.51 9 4.34E01 9.2 LYM13 7 12152. 1 G 8.27 8 1.51E01 14.9
LYM19 11752. 2 K 0.53 2 4.41E01 11.8 LYM15 2 12372. 1 G 9.36 1 1.57E- 01 29.9
LYM13 8 12562. 1 K 0.51 9 4.60E01 9.2 LYM26 8 12482. 1 G 9.01 1 1.64E01 25.1
LYM29 0 12502. 4 K 0.51 9 4.61E01 9.1 LYM13 4 12314. 2 G 9.93 5 1.83E01 37.9
LYM10 5 12294. 3 K 0.51 8 5.00E01 8.9 LYM16 2 12231. 3 G 8.42 8 1.87E- 01 17
LYM1 11603. 2 K 0.51 5 5.19E- 01 8.3 LYM66 11952. 1 G 8.19 4 1.92E- 01 13.7
LYM17 4 12414. 3 K 0.51 3 5.33E01 7.8 LYM66 11954. 4 G 8.63 1 2.06E01 19.8
LYM17 11682. 1 K 0.51 5 5.34E01 8.2 LYM43 11791. 4 G 8.57 4 2.13E01 19
LYM29 0 12502. 2 K 0.52 1 5.41E- 01 9.6 LYM26 11824. 6 G 8.67 2.15E01 20.3
LYM14 1 12404. 4 K 0.51 4 5.48E01 8.1 LYM31 11921. 3 G 8.12 7 2.23E01 12.8
LYM3 12041. 1 K 0.50 8 5.57E01 6.9 LYM14 8 12174. 2 G 9.02 6 2.26E01 25.3
LYM26 8 12482. 1 K 0.50 6 5.59E01 6.5 LYM11 1 12251. 3 G 8.39 6 2.31E01 16.5
LYM16 2 12233. 2 K 0.50 6 5.75E01 6.4 LYM24 12062. 3 G 8.37 8 2.38E01 16.3
LYM15 2 12371. 3 K 0.50 7 5.75E01 6.6 LYM13 7 12151. 2 G 7.63 7 2.41E01 6
LYM16 2 12231. 1 K 0.51 3 5.85E01 7.8 LYM11 1 12254. 4 G 8.57 1 2.44E01 19
317
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM15 2 12371. 2 K 0.50 5 5.88E01 6.2 LYM68 11942. 3 G 7.98 9 2.45E01 10.9
LYM10 6 12141. 4 K 0.50 5 5.96E01 6.1 LYM15 3 12323. 2 G 7.58 8 2.51E01 5.3
LYM15 11612. 3 K 0.50 6 6.17E01 6.4 LYM13 8 12564. 1 G 8.79 9 2.53E01 22.1
LYM10 5 12297. 2 K 0.50 7 6.20E01 6.5 LYM67 11782. 6 G 7.56 3 2.57E01 5
LYM10 5 12294. 2 K 0.50 5 6.39E01 6.1 LYM68 11943. 2 G 8.64 9 2.60E01 20.1
LYM21 11672. 4 K 0.50 4 6.50E01 5.9 LYM62 12022. 1 G 8.78 1 2.63E01 21.9
LYM1 11604. 4 K 0.5 6.53E01 5.1 LYM14 12051. 1 G 7.58 7 2.72E01 5.3
LYM15 11612. 2 K 0.50 2 6.56E01 5.6 LYM13 8 12562. 1 G 8.86 2 2.79E01 23
LYM14 1 12404. 2 K 0.50 1 6.61E01 5.3 LYM15 2 12376. 1 G 7.95 2 2.80E01 10.4
LYM17 11684. 4 K 0.50 2 6.69E01 5.5 LYM26 11821. 2 G 7.54 4 2.80E01 4.7
LYM19 11751. 4 K 0.50 4 6.71E01 5.9 LYM10 5 12294. 3 G 8.88 5 2.83E01 23.3
LYM10 11744. 5 K 0.49 8 6.80E01 4.8 LYM26 11824. 5 G 7.68 2 2.83E01 6.6
LYM4 11706. 3 K 0.49 6 6.93E01 4.4 LYM10 0 12131. 2 G 7.59 6 2.88E01 5.4
LYM13 2 12275. 1 K 0.49 8 7.10E01 4.8 LYM13 7 12153. 1 G 9.25 6 2.90E01 28.5
LYM11 3 12444. 4 K 0.49 4 7.42E01 3.8 LYM51 11891. 1 G 7.81 2.91E01 8.4
LYM12 9 12573. 5 K 0.49 4 7.44E01 3.8 LYM69 11853. 5 G 8.64 3 2.92E01 20
LYM13 11773. 2 K 0.49 2 7.46E01 3.5 LYM51 11893. 4 G 9.29 8 2.98E01 29.1
LYM13 0 12333. 1 K 0.49 5 7.48E01 4 LYM62 12022. 2 G 8.81 4 3.09E01 22.3
LYM16 11624. 4 K 0.49 2 7.53E01 3.4 LYM11 9 12462. 1 G 7.62 6 3.21E01 5.8
LYM14 3 12521. 1 K 0.49 4 7.62E01 3.8 LYM17 2 12301. 2 G 8.25 3.22E01 14.5
LYM12 9 12571. 3 K 0.49 3 7.92E01 3.7 LYM14 3 12521. 2 G 9.22 8 3.24E01 28.1
LYM13 11772. 2 K 0.48 8 8.40E01 2.6 LYM31 11924. 4 G 8.26 9 3.35E01 14.8
LYM9 11633. 2 K 0.48 6 8.54E01 2.2 LYM14 12052. 5 G 8.09 1 3.45E01 12.3
LYM29 0 12502. 1 K 0.48 7 8.54E01 2.4 LYM62 12021. 1 G 8.69 5 3.46E01 20.7
LYM9 11634. 5 K 0.48 4 8.82E01 1.7 LYM53 11841. 1 G 9.04 5 3.63E01 25.6
LYM10 6 12144. 4 K 0.48 4 8.84E01 1.8 LYM67 11782. 5 G 7.53 4 3.65E01 4.6
318
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 4 12411. 3 K 0.48 5 8.98E01 1.9 LYM11 9 12461. 1 G 8.65 5 3.72E01 20.1
LYM26 8 12483. 4 K 0.48 2 9.01E01 1.5 LYM30 11912. 6 G 7.91 3.80E01 9.8
LYM12 9 12572. 2 K 0.48 1 9.19E01 1.2 LYM30 11913. 4 G 14.9 39 3.98E01 107.4
LYM13 4 12311. 2 K 0.48 9.39E01 0.9 LYM25 4 12471. 2 G 8.13 6 4.05E01 12.9
LYM9 11633. 7 K 0.48 9.41E01 0.8 LYM24 12061. 2 G 8.90 5 4.08E01 23.6
LYM13 11771. 9 K 0.47 9 9.49E01 0.7 LYM53 11844. 2 G 8.51 6 4.19E01 18.2
LYM13 7 12151. 1 K 0.47 9 9.51E01 0.7 LYM13 0 12333. 1 G 8.44 4.29E01 17.1
LYM13 4 12312. 3 K 0.47 8 9.61E01 0.6 LYM51 11893. 2 G 8.6 4.35E01 19.4
LYM16 2 12231. 3 K 0.47 8 9.64E01 0.6 LYM51 11892. 1 G 8.00 7 4.43E01 11.1
LYM2 11693. 3 K 0.47 7 9.81E01 0.3 LYM26 11824. 3 G 7.46 7 4.44E01 3.6
CONTR OL K 0.47 6 0 LYM14 8 12173. 1 G 7.90 9 4.46E01 9.8
LYM1 11602. 6 L 2.50 7 2.00E05 100.5 LYM62 12023. 4 G 7.50 5 4.48E01 4.2
LYM10 11741. 2 L 2.40 5 3.80E05 92.3 LYM17 0 12453. 3 G 8.37 8 4.85E01 16.3
LYM11 9 12462. 2 L 2.19 1 8.04E04 75.2 LYM16 2 12234. 3 G 8.24 6 4.91E01 14.5
LYM9 11632. 1 L 2.13 4 1.01E03 70.6 LYM17 0 12452. 3 G 7.89 4.91E01 9.5
LYM14 3 12524. 7 L 2.09 4 1.DEOS 67.4 LYM31 11922. 3 G 8.37 4 5.24E01 16.2
LYM14 8 12171. 2 L 2.03 3 1.84E03 62.6 LYM13 4 12313. 2 G 8.02 8 5.29E01 11.4
LYM13 8 12561. 1 L 2.04 1 2.32E03 63.2 LYM15 3 12321. 2 G 8.37 4 5.39E01 16.2
LYM17 4 12414. 3 L 1.92 1 9.20E03 53.6 LYM25 4 12472. 3 G 7.44 5 5.40E01 3.3
LYM1 11604. 4 L 1.85 3 1.20E02 48.1 LYM15 2 12371. 2 G 8.10 3 5.47E01 12.5
LYM10 2 12222. 2 L 1.84 7 1.29E02 47.7 LYM29 0 12502. 4 G 7.86 5 5.54E01 9.2
LYM13 0 12333. 1 L 1.86 8 1.31E02 49.3 LYM13 0 12332. 2 G 9.59 4 5.61E01 33.2
LYM14 8 12174. 1 L 1.84 1.45E02 47.1 LYM17 2 12302. 2 G 7.73 6 5.61E01 7.4
LYM28 9 12493. 2 L 1.86 8 1.45E02 49.3 LYM3 12041. 1 G 8.49 2 5.64E01 17.9
LYM14 1 12402. 4 L 1.84 1 1.66E02 47.2 LYM62 12022. 4 G 7.94 9 5.65E01 10.3
LYM11 9 12462. 1 L 1.84 1 1.92E02 47.2 LYM13 0 12331. 3 G 7.74 8 5.70E01 7.5
319
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 11742. 2 L 1.79 5 2.33E02 43.5 LYM17 4 12411. 2 G 7.83 7 5.73E01 8.8
LYM13 8 12561. 3 L 1.82 3 2.34E02 45.8 LYM13 8 12566. 1 G 7.71 6 5.76E01 7.1
LYM1 11602. 1 L 1.79 2 2.41E02 43.2 LYM14 12052. 4 G 7.77 6 5.91E01 7.9
LYM10 5 12293. 1 L 1.77 6 2.81E02 42 LYM43 11791. 2 G 8.02 5 6.07E01 11.4
LYM17 4 12411. 2 L 1.77 8 3.09E02 42.1 LYM69 11853. 4 G 7.97 7 6.13E01 10.7
LYM10 11744. 1 L 1.75 2 3.26E02 40.1 LYM68 11941. 4 G 7.69 3 6.29E01 6.8
LYM16 2 12234. 4 L 1.83 8 3.42E02 47 LYM26 8 12481. 1 G 7.84 4 6.40E01 8.9
LYM15 2 12372. 2 L 1.74 4 4.01E02 39.4 LYM43 11793. 2 G 8.08 7 6.72E01 12.3
LYM4 11706. 5 L 1.72 9 4.16E02 38.3 LYM53 11842. 4 G 8.04 9 6.85E01 11.7
LYM16 2 12234. 3 L 1.74 2 4.19E02 39.3 LYM31 11923. 1 G 7.71 3 7.10E01 7.1
LYM13 0 12332. 2 L 1.71 7 5.60E02 37.3 LYM14 8 12172. 1 G 7.51 6 7.34E01 4.3
LYM19 11751. 5 L 1.69 2 6.21E02 35.3 LYM13 2 12276. 1 G 7.88 7 7.39E01 9.5
LYM15 11614. 3 L 1.67 6 6.35E02 34 LYM10 5 12294. 2 G 7.42 7 7.63E01 3.1
LYM11 9 12463. 2 L 1.67 5 7.13E02 33.9 LYM11 9 12462. 2 G 7.29 4 7.81E01 1.2
LYM14 0 12262. 3 L 1.65 8 7.47E02 32.6 LYM53 11841. 2 G 7.54 6 7.89E01 4.7
LYM15 11612. 3 L 1.67 5 7.83E02 33.9 LYM10 0 12133. 3 G 7.31 7 7.97E01 1.6
LYM28 9 12491. 1 L 1.68 2 8.02E02 34.5 LYM51 11894. 2 G 7.29 6 8.21E01 1.3
LYM13 0 12334. 1 L 1.65 8 8.07E02 32.6 LYM11 9 12461. 4 G 7.33 6 8.46E01 1.8
LYM19 11751. 4 L 1.68 4 8.28E02 34.6 LYM95 12124. 5 G 7.47 1 8.50E01 3.7
LYM19 11753. 1 L 1.62 5 1.03E01 29.9 LYM10 5 12293. 1 G 7.46 7 8.53E01 3.6
LYM13 4 12311. 2 L 1.64 1.05E01 31.1 LYM25 4 12474. 4 G 7.73 7 8.61E01 7.4
LYM16 2 12231. 1 L 1.63 7 1.06E01 30.9 LYM25 4 12474. 3 G 7.32 1 8.99E01 1.6
LYM13 2 12273. 2 L 1.61 9 1.07E01 29.5 LYM17 0 12453. 2 G 7.23 9 9.08E01 0.5
LYM1 11603. 2 L 1.61 4 1.10E01 29 LYM17 2 12301. 3 G 7.31 9 9.09E01 1.6
LYM11 9 12461. 4 L 1.61 3 1.13E01 29 LYM17 0 12452. 4 G 7.24 9 9.33E01 0.6
LYM15 11611. 3 L 1.63 3 1.16E01 30.6 LYM69 11852. 4 G 7.22 5 9.80E01 0.3
320
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 11684. 4 L 1.60 9 1.17E01 28.6 LYM14 12051. 4 G 7.24 4 9.80E01 0.6
LYM14 8 12173. 1 L 1.63 9 1.21E01 31 LYM14 3 12521. 1 G 7.21 1 9.94E01 0.1
LYM14 1 12404. 4 L 1.59 5 1.46E01 27.6 CONTR OL G 7.20 4 0
LYM10 2 12222. 3 L 1.61 5 1.50E01 29.1 LYM13 8 12561. 1 H 25.0 53 4.46E04 61.4
LYM26 8 12483. 2 L 1.56 9 1.55E01 25.5 LYM13 4 12314. 2 H 23.0 18 4.64E04 48.3
LYM16 2 12231. 3 L 1.57 2 1.57E01 25.7 LYM26 8 12482. 3 H 22.6 16 7.44E04 45.7
LYM13 2 12271. 4 L 1.57 1.71E01 25.5 LYM43 11791. 5 H 23.8 24 1.69E03 53.5
LYM15 2 12371. 2 L 1.56 8 1.80E01 25.4 LYM10 0 12131. 2 H 24.7 77 2.60E03 59.6
LYM14 1 12404. 3 L 1.56 1.82E01 24.7 LYM14 0 12264. 1 H 20.4 54 8.48E03 31.8
LYM21 11671. 2 L 1.54 8 1.95E01 23.8 LYM68 11942. 3 H 21.8 99 9.46E03 41.1
LYM9 11633. 7 L 1.55 1 1.99E01 24 LYM57 12013. 5 H 21.3 79 1.02E02 37.7
LYM17 11682. 1 L 1.57 2 2.12E01 25.7 LYM14 3 12524. 2 H 22.0 43 1.20E02 42
LYM10 5 12294. 2 L 1.58 2.17E01 26.3 LYM14 8 12174. 1 H 29.3 6 1.27E02 89.1
LYM10 0 12133. 1 L 1.52 2.30E01 21.5 LYM31 11923. 4 H 22.0 07 1.51E02 41.8
LYM15 11612. 2 L 1.52 1 2.35E01 21.6 LYM17 0 12453. 2 H 19.3 73 2.87E02 24.8
LYM11 1 12251. 1 L 1.53 3 2.43E01 22.6 LYM69 11853. 5 H 20.5 73 3.39E02 32.5
LYM14 3 12524. 2 L 1.51 5 2.44E01 21.2 LYM29 0 12502. 4 H 22.4 69 3.42E02 44.7
LYM21 11673. 1 L 1.51 6 2.45E01 21.2 LYM13 0 12331. 3 H 18.9 05 3.44E02 21.8
LYM17 4 12411. 3 L 1.51 5 2.58E01 21.1 LYM13 7 12151. 1 H 21.7 62 3.90E02 40.2
LYM29 0 12502. 4 L 1.51 7 2.60E01 21.3 LYM53 11841. 1 H 22.5 4 5.42E02 45.2
LYM21 11672. 4 L 1.50 6 2.73E01 20.4 LYM51 11893. 2 H 18.8 76 6.70E02 21.6
LYM19 11754. 1 L 1.49 1 2.79E01 19.2 LYM13 8 12561. 3 H 23.0 75 7.08E02 48.7
LYM29 0 12501. 3 L 1.48 3 3.11E01 18.6 LYM14 8 12171. 2 H 21.1 07 7.50E02 36
LYM17 4 12412. 1 L 1.48 6 3.12E01 18.8 LYM11 9 12462. 2 H 19.8 45 8.05E02 27.8
LYM10 11744. 5 L 1.47 9 3.29E01 18.2 LYM57 12012. 2 H 18.1 27 8.18E02 16.8
LYM13 11771. 6 L 1.47 6 3.30E01 18 LYM11 9 12462. 1 H 25.6 04 8.45E02 64.9
321
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM26 8 12483. 4 L 1.47 8 3.34E01 18.1 LYM14 12052. 4 H 18.1 08 9.10E02 16.7
LYM9 11632. 2 L 1.46 7 3.38E01 17.3 LYM68 11941. 3 H 21.3 83 9.75E02 37.7
LYM4 11705. 2 L 1.46 5 3.38E01 17.1 LYM43 11791. 4 H 20.1 59 1.06E- 01 29.9
LYM28 9 12491. 4 L 1.46 4 3.49E01 17 LYM13 7 12152. 1 H 17.8 11 1.18E- 01 14.7
LYM14 3 12521. 1 L 1.45 3 3.61E- 01 16.2 LYM10 5 12294. 3 H 18.8 02 1.43E- 01 21.1
LYM14 1 12404. 2 L 1.45 6 3.64E01 16.4 LYM11 1 12252. 2 H 35.5 94 1.61E- 01 129.3
LYM10 11742. 1 L 1.47 7 3.68E01 18.1 LYM30 11913. 5 H 19.9 62 1.68E- 01 28.6
LYM28 9 12493. 6 L 1.43 1 4.07E01 14.4 LYM26 8 12481. 1 H 18.4 91 1.73E- 01 19.1
LYM10 2 12221. 1 L 1.42 5 4.39E01 13.9 LYM13 0 12334. 1 H 17.4 32 1.74E- 01 12.3
LYM11 1 12252. 2 L 1.44 1 4.63E01 15.2 LYM14 8 12173. 1 H 18.3 18 1.82E- 01 18
LYM13 8 12562. 1 L 1.40 7 4.77E01 12.5 LYM68 11943. 2 H 20.4 73 1.93E- 01 31.9
LYM13 7 12153. 1 L 1.41 4 4.85E01 13.1 LYM13 7 12154. 5 H 19.4 06 2.03E01 25
LYM26 8 12482. 3 L 1.39 7 5.07E01 11.7 LYM15 2 12372. 2 H 17.7 21 2.08E01 14.2
LYM2 11692. 3 L 1.39 1 5.24E01 11.2 LYM10 0 12131. 3 H 17.3 47 2.10E01 11.7
LYM13 11772. 1 L 1.38 5 5.50E01 10.8 LYM10 5 12295. 2 H 18.6 36 2.16E01 20.1
LYM12 9 12573. 5 L 1.37 5.85E01 9.5 LYM13 0 12332. 2 H 19.3 96 2.39E01 25
LYM16 2 12233. 2 L 1.37 4 5.94E01 9.8 LYM29 0 12501. 3 H 18.1 76 2.41E01 17.1
LYM10 0 12131. 3 L 1.36 9 6.12E- 01 9.5 LYM17 2 12301. 2 H 19.4 01 2.45E01 25
LYM11 3 12442. 1 L 1.35 4 6.33E01 8.2 LYM68 11942. 2 H 18.8 4 2.53E01 21.4
LYM14 8 12172. 1 L 1.36 8 6.37E01 9.4 LYM62 12022. 1 H 18.1 31 2.65E01 16.8
LYM17 11681. 4 L 1.34 5 6.69E01 7.6 LYM57 12012. 6 H 17.8 54 2.67E01 15
LYM26 8 12482. 1 L 1.34 9 6.71E- 01 7.9 LYM11 1 12251. 3 H 19.2 31 2.86E01 23.9
LYM16 11624. 4 L 1.33 9 6.83E01 7.1 LYM11 1 12254. 4 H 19.7 09 2.89E01 27
LYM17 11684. 5 L 1.33 2 7.05E01 6.5 LYM51 11894. 2 H 17.1 23 3.01E- 01 10.3
LYM9 11633. 2 L 1.33 4 7.13E- 01 6.7 LYM30 11912. 6 H 20.5 01 3.16E- 01 32.1
LYM17 4 12414. 2 L 1.32 7.47E01 5.6 LYM53 11844. 2 H 20.1 69 3.27E01 29.9
322
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM17 11683. 1 L 1.31 3 7.74E01 5 LYM13 2 12271. 4 H 17.7 65 3.38E01 14.4
LYM29 0 12502. 1 L 1.31 3 7.90E01 5 LYM62 12021. 1 H 19.7 79 3.40E01 27.4
LYM14 0 12261. 4 L 1.30 4 8.12E01 4.2 LYM13 7 12153. 1 H 16.7 96 3.54E01 8.2
LYM1 11601. 1 L 1.30 3 8.13E01 4.2 LYM10 0 12134. 1 H 17.7 39 3.54E01 14.3
LYM10 2 12222. 6 L 1.30 8 8.19E01 4.6 LYM15 2 12376. 1 H 18.5 14 3.63E01 19.3
LYM2 11693. 3 L 1.28 9 8.60E01 3 LYM51 11893. 4 H 22.5 79 3.83E01 45.5
LYM13 2 12275. 1 L 1.28 8 8.64E01 3 LYM10 0 12133. 3 H 16.6 99 4.07E01 7.6
LYM14 3 12521. 2 L 1.28 2 8.86E01 2.5 LYM14 3 12521. 2 H 16.5 83 4.25E01 6.8
LYM22 11762. 1 L 1.28 8.94E01 2.3 LYM11 1 12254. 3 H 22.3 09 4.38E01 43.7
LYM14 3 12523. 4 L 1.27 2 9.24E01 1.7 LYM14 12051. 4 H 17.1 86 4.39E01 10.7
LYM13 11771. 9 L 1.26 2 9.58E01 0.9 LYM15 2 12372. 1 H 20.5 78 4.63E01 32.6
LYM11 1 12254. 4 L 1.26 2 9.60E01 0.9 LYM14 3 12524. 7 H 23.4 43 4.73E01 51
LYM13 8 12564. 1 L 1.25 1 1.00E +00 0 LYM13 4 12312. 4 H 16.9 24 4.79E01 9
CONTR OL L 1.25 1 0 LYM29 0 12502. 2 H 19.0 66 4.84E01 22.8
LYM1 11602. 6 M 0.31 3 3.40E05 94.2 LYM68 11941. 4 H 16.6 57 4.90E01 7.3
LYM10 11741. 2 M 0.30 1 6.50E05 86.3 LYM11 9 12461. 1 H 23.2 76 4.91E01 49.9
LYM11 9 12462. 2 M 0.27 4 1.29E03 69.7 LYM26 11824. 6 H 17.6 42 4.94E01 13.7
LYM9 11632. 1 M 0.26 7 1.64E03 65.3 LYM13 2 12275. 1 H 16.5 39 5.07E01 6.5
LYM14 3 12524. 7 M 0.26 2 1.85E03 62.2 LYM67 11783. 5 H 17.1 09 5.29E01 10.2
LYM14 8 12171. 2 M 0.25 4 3.03E03 57.5 LYM13 2 12276. 1 H 17.0 95 5.30E01 10.1
LYM13 8 12561. 1 M 0.25 5 3.74E03 58.1 LYM11 9 12461. 4 H 16.9 19 5.75E01 9
LYM17 4 12414. 3 M 0.24 1.42E02 48.8 LYM43 11792. 2 H 17.3 89 5.90E01 12
LYM1 11604. 4 M 0.23 2 1.88E02 43.5 LYM53 11842. 4 H 18.3 13 5.93E01 18
LYM13 0 12333. 1 M 0.23 3 2.02E02 44.7 LYM30 11912. 7 H 16.9 2 6.04E01 9
LYM10 2 12222. 2 M 0.23 1 2.03E02 43.1 LYM95 12124. 4 H 16.2 55 6.19E01 4.7
LYM28 9 12493. 2 M 0.23 3 2.20E02 44.7 LYM13 8 12562. 1 H 17.0 22 6.38E01 9.7
323
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 14 8 12174. 1 M 0.23 2.25E02 42.5 LYM30 11913. 3 H 16.5 14 6.50E01 6.4
LYM 14 1 12402. 4 M 0.23 2.54E02 42.6 LYM43 11793. 2 H 17.2 97 6.59E01 11.4
LYM 11 9 12462. 1 M 0.23 2.88E02 42.6 LYM 16 2 12231. 3 H 16.7 71 6.82E01 8
LYM 13 8 12561. 3 M 0.22 8 3.48E02 41.2 LYM67 11782. 4 H 16.2 8 6.90E01 4.9
LYM 10 11742. 2 M 0.22 4 3.55E02 39 LYM26 11824. 5 H 15.9 6 7.43E01 2.8
LYM1 11602. 1 M 0.22 4 3.66E02 38.8 LYM31 11922. 3 H 16.0 61 7.61E01 3.5
LYM 10 5 12293. 1 M 0.22 2 4.23E02 37.6 LYM 15 2 12371. 2 H 16.5 7 7.69E01 6.7
LYM 17 4 12411. 2 M 0.22 2 4.59E02 37.7 LYM69 11852. 4 H 16.0 5 7.87E01 3.4
LYM 16 2 12234. 4 M 0.23 4.82E02 42.4 LYM25 4 12474. 4 H 16.8 55 8.07E01 8.6
LYM 10 11744. 1 M 0.21 9 4.91E02 35.7 LYM 11 1 12251. 1 H 15.7 98 8.44E01 1.8
LYM 15 2 12372. 2 M 0.21 8 5.92E02 35.1 LYM 15 2 12373. 1 H 16.2 37 8.53E01 4.6
LYM 16 2 12234. 3 M 0.21 8 6.16E02 34.9 LYM26 8 12483. 2 H 16.0 6 8.84E01 3.5
LYM4 11706. 5 M 0.21 6 6.18E02 34 LYM51 11891. 1 H 15.7 1 8.91E01 1.2
LYM 15 11611. 3 M 0.22 1 7.09E02 36.8 LYM 17 2 12302. 2 H 15.7 68 9.46E01 1.6
LYM 13 0 12332. 2 M 0.21 5 8.05E02 33 LYM66 11954. 4 H 15.8 84 9.47E01 2.3
LYM 19 11751. 5 M 0.21 2 8.99E02 31.1 LYM 13 8 12564. 1 H 15.6 54 9.64E01 0.8
LYM 15 11614. 3 M 0.21 9.28E02 29.8 LYM 14 0 12262. 3 H 15.6 52 9.65E01 0.8
LYM 11 9 12463. 2 M 0.20 9 1.02E01 29.8 LYM29 0 12502. 1 H 15.5 92 9.67E01 0.4
LYM 13 2 12271. 4 M 0.20 9 1.03E01 29.8 LYM 17 0 12452. 3 H 15.5 73 9.84E01 0.3
LYM 14 0 12262. 3 M 0.20 7 1.08E01 28.5 LYM26 8 12482. 1 H 15.5 28 9.99E01 0
LYM 15 11612. 3 M 0.20 9 1.11E01 29.7 CONTR OL H 15.5 23 0
LYM28 9 12491. 1 M 0.21 1.13E01 30.3 LYM 11 1 12252. 2 J 0.07 5 6.99E04 88
LYM 13 0 12334. 1 M 0.20 7 1.15E01 28.5 LYM 14 8 12174. 1 J 0.06 1.71E02 51.2
LYM 19 11751. 4 M 0.21 1.16E01 30.4 LYM 10 0 12131. 2 J 0.05 7 3.78E02 43.8
LYM 19 11753. 1 M 0.20 3 1.46E01 25.9 LYM 11 9 12462. 1 J 0.05 7 4.39E02 42.8
LYM 13 4 12311. 2 M 0.20 5 1.46E01 27 LYM 13 4 12314. 2 J 0.05 6 5.26E02 40.2
324
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM16 2 12231. 1 M 0.20 5 1.48E01 26.8 LYM13 8 12561. 1 J 0.05 6 5.33E02 40.8
LYM13 2 12273. 2 M 0.20 2 1.51E01 25.4 LYM53 11841. 1 J 0.05 3 1.00E01 33.8
LYM1 11603. 2 M 0.20 2 1.55E01 25 LYM11 9 12461. 1 J 0.05 5 1.12E01 39
LYM11 9 12461. 4 M 0.20 2 1.59E01 24.9 LYM43 11791. 5 J 0.05 2 1.28E01 30.7
LYM14 8 12173. 1 M 0.20 5 1.64E01 26.9 LYM14 3 12524. 2 J 0.05 2 1.29E01 30.9
LYM17 11684. 4 M 0.20 1 1.64E01 24.6 LYM13 8 12561. 3 J 0.05 2 1.37E01 31
LYM14 1 12404. 4 M 0.19 9 1.99E01 23.6 LYM26 8 12482. 3 J 0.05 2 1.50E01 29.7
LYM10 2 12222. 3 M 0.20 2 2.01E01 25.1 LYM51 11893. 4 J 0.05 2 1.68E01 31.2
LYM17 4 12412. 1 M 0.20 1 2.06E01 24.5 LYM17 0 12453. 2 J 0.05 1.80E01 26.5
LYM26 8 12483. 2 M 0.19 6 2.14E01 21.6 LYM14 8 12171. 2 J 0.05 1.84E01 25.8
LYM16 2 12231. 3 M 0.19 6 2.16E01 21.8 LYM29 0 12502. 4 J 0.05 1 1.91E01 27.3
LYM4 11705. 2 M 0.19 7 2.21E01 22.2 LYM69 11853. 5 J 0.05 1.99E01 25.8
LYM15 2 12371. 2 M 0.19 6 2.42E01 21.5 LYM14 3 12524. 7 J 0.05 2 2.03E01 30.5
LYM14 1 12404. 3 M 0.19 5 2.46E01 20.8 LYM15 2 12372. 1 J 0.05 1 2.08E01 27.9
LYM21 11671. 2 M 0.19 4 2.63E01 19.9 LYM31 11923. 4 J 0.04 9 2.30E01 23.8
LYM9 11633. 7 M 0.19 4 2.66E01 20.2 LYM62 12021. 1 J 0.04 9 2.47E01 23.5
LYM17 11682. 1 M 0.19 6 2.76E01 21.7 LYM68 11941. 3 J 0.04 9 2.49E01 22.7
LYM10 5 12294. 2 M 0.19 7 2.79E01 22.4 LYM68 11942. 3 J 0.04 9 2.51E01 22.9
LYM10 0 12133. 1 M 0.19 3.08E01 17.7 LYM30 11912. 6 J 0.04 9 2.52E01 23.6
LYM15 11612. 2 M 0.19 3.12E01 17.8 LYM13 7 12151. 1 J 0.04 9 2.56E01 23
LYM11 1 12251. 1 M 0.19 2 3.17E01 18.8 LYM11 1 12254. 3 J 0.05 2.65E01 26.4
LYM14 3 12524. 2 M 0.18 9 3.24E01 17.4 LYM13 7 12154. 5 J 0.04 9 2.67E01 22.6
LYM21 11673. 1 M 0.19 3.25E01 17.4 LYM43 11791. 4 J 0.04 7 3.56E01 18.4
LYM17 4 12411. 3 M 0.18 9 3.38E01 17.3 LYM57 12013. 5 J 0.04 7 3.61E01 17.9
LYM29 0 12502. 4 M 0.19 3.39E01 17.5 LYM53 11844. 2 J 0.04 7 3.67E01 18.8
LYM21 11672. 4 M 0.18 8 3.57E01 16.6 LYM30 11913. 5 J 0.04 7 3.74E01 18.1
325
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM19 11754. 1 M 0.18 6 3.68E01 15.5 LYM17 2 12301. 2 J 0.04 7 3.74E01 17.8
LYM29 0 12501. 3 M 0.18 5 4.02E01 14.9 LYM14 0 12264. 1 J 0.04 6 4.03E01 16.5
LYM10 11744. 5 M 0.18 5 4.23E01 14.5 LYM11 1 12251. 3 J 0.04 6 4.13E01 16.2
LYM13 11771. 6 M 0.18 4 4.24E01 14.3 LYM10 5 12294. 3 J 0.04 6 4.21E01 15.8
LYM26 8 12483. 4 M 0.18 5 4.28E01 14.5 LYM11 9 12462. 2 J 0.04 6 4.34E01 16.2
LYM9 11632. 2 M 0.18 3 4.36E01 13.6 LYM29 0 12502. 2 J 0.04 7 4.34E01 16.7
LYM28 9 12491. 4 M 0.18 3 4.48E01 13.4 LYM68 11943. 2 J 0.04 6 4.46E01 15
LYM10 11742. 1 M 0.18 5 4.60E01 14.4 LYM26 8 12481. 1 J 0.04 6 4.64E01 14.3
LYM14 3 12521. 1 M 0.18 2 4.66E01 12.6 LYM13 7 12153. 1 J 0.04 6 4.66E01 14.7
LYM14 1 12404. 2 M 0.18 2 4.66E01 12.7 LYM13 7 12152. 1 J 0.04 6 4.76E01 14.3
LYM28 9 12493. 6 M 0.17 9 5.20E01 10.9 LYM11 1 12254. 4 J 0.04 5 5.19E- 01 12.8
LYM17 11681. 4 M 0.17 9 5.21E- 01 11 LYM67 11783. 5 J 0.04 5 5.24E01 13.1
LYM10 2 12221. 1 M 0.17 8 5.52E01 10.4 LYM14 12052. 4 J 0.04 5 5.38E01 12
LYM11 1 12252. 2 M 0.18 5.64E01 11.6 LYM15 2 12376. 1 J 0.04 5 5.55E01 11.7
LYM13 8 12562. 1 M 0.17 6 5.99E01 9 LYM57 12012. 2 J 0.04 4 5.56E01 11.6
LYM13 7 12153. 1 M 0.17 7 5.99E01 9.6 LYM43 11792. 2 J 0.04 5 5.60E01 11.9
LYM26 8 12482. 3 M 0.17 5 6.31E- 01 8.3 LYM68 11942. 2 J 0.04 4 6.17E- 01 9.8
LYM2 11692. 3 M 0.17 4 6.50E01 7.8 LYM13 4 12312. 4 J 0.04 3 6.74E01 8.3
LYM13 11772. 1 M 0.17 3 6.76E01 7.3 LYM13 8 12562. 1 J 0.04 3 6.85E01 7.9
LYM12 9 12573. 5 M 0.17 1 7.18E- 01 6.1 LYM10 5 12295. 2 J 0.04 3 6.88E01 7.9
LYM16 2 12233. 2 M 0.17 2 7.20E01 6.4 LYM15 2 12372. 2 J 0.04 3 6.89E01 7.7
LYM10 0 12131. 3 M 0.17 1 7.38E01 6.1 LYM25 4 12474. 4 J 0.04 3 7.03E01 8.3
LYM14 8 12172. 1 M 0.17 1 7.57E01 6 LYM51 11893. 2 J 0.04 3 7.27E01 6.7
LYM11 3 12442. 1 M 0.16 9 7.72E01 4.9 LYM57 12012. 6 J 0.04 3 7.31E- 01 6.8
LYM26 8 12482. 1 M 0.16 9 8.03E01 4.5 LYM11 9 12461. 4 J 0.04 3 7.38E01 6.7
LYM16 11624. 4 M 0.16 7 8.24E01 3.7 LYM10 0 12134. 1 J 0.04 2 7.60E01 6
326
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 17 11684. 5 M 0.16 7 8.48E01 3.2 LYM 13 2 12276. 1 J 0.04 2 7.61E01 5.8
LYM9 11633. 2 M 0.16 7 8.49E01 3.4 LYM29 0 12501. 3 J 0.04 2 7.65E01 5.8
LYM 17 4 12414. 2 M 0.16 5 8.92E01 2.3 LYM62 12022. 1 J 0.04 2 7.73E01 5.6
LYM 17 11683. 1 M 0.16 4 9.20E01 1.7 LYM26 11824. 6 J 0.04 2 7.80E01 5.3
LYM29 0 12502. 1 M 0.16 4 9.25E01 1.7 LYM51 11891. 1 J 0.04 2 8.08E01 4.6
LYM 10 2 12222. 6 M 0.16 3 9.46E01 1.3 LYM43 11793. 2 J 0.04 2 8.24E01 4.5
LYM 14 0 12261. 4 M 0.16 3 9.55E01 1 LYM 10 0 12131. 3 J 0.04 1 8.31E01 4
LYM1 11601. 1 M 0.16 3 9.57E01 0.9 LYM 14 3 12521. 2 J 0.04 1 8.39E01 3.9
CONTR OL M 0.16 1 0 LYM 13 2 12275. 1 J 0.04 1 8.53E01 3.6
LYM 10 11741. 2 N 0.27 4 1.39E04 51 LYM 10 0 12133. 3 J 0.04 1 8.80E01 2.9
LYM9 11632. 1 N 0.27 2 1.71E04 49.7 LYM51 11894. 2 J 0.04 1 8.81E01 2.9
LYM1 11602. 6 N 0.27 1.78E04 48.6 LYM67 11782. 4 J 0.04 1 8.84E01 2.9
LYM 14 3 12524. 7 N 0.26 7 4.23E04 46.9 LYM 14 12051. 4 J 0.04 1 8.90E01 2.7
LYM 11 9 12462. 2 N 0.25 2 5.22E03 38.9 LYM53 11842. 4 J 0.04 1 9.19E01 2.1
LYM 10 11742. 2 N 0.23 6 1.12E02 29.9 LYM 17 2 12302. 2 J 0.04 9.57E01 1.1
LYM28 9 12493. 2 N 0.23 5 1.37E02 29.4 LYM 13 0 12331. 3 J 0.04 9.66E01 0.8
LYM 17 4 12414. 3 N 0.23 8 1.53E02 30.8 LYM26 8 12482. 1 J 0.04 9.71E01 0.7
LYM 14 8 12171. 2 N 0.23 4 1.54E02 29 LYM 13 2 12271. 4 J 0.04 9.73E01 0.7
LYM 10 5 12293. 1 N 0.23 3 1.86E02 28 LYM 16 2 12231. 3 J 0.04 9.76E01 0.6
LYM 13 8 12561. 1 N 0.23 5 1.90E02 29.3 LYM 14 12051. 1 J 0.04 9.76E01 0.6
LYM 10 2 12222. 2 N 0.23 1 2.04E02 27.3 LYM30 11912. 7 J 0.04 9.77E01 0.6
LYM 14 8 12174. 1 N 0.23 2.20E02 26.7 LYM69 11854. 2 J 0.04 9.77E01 0.5
LYM 13 0 12333. 1 N 0.23 2 2.21E02 27.5 LYM 15 2 12373. 1 J 0.04 9.81E01 0.5
LYM 16 2 12234. 3 N 0.23 1 2.61E02 27.1 LYM 14 8 12173. 1 J 0.04 9.85E01 0.4
LYM1 11604. 4 N 0.23 2.80E02 26.7 CONTR OL J 0.04 0
LYM 15 11614. 3 N 0.22 7 3.23E02 25.2 LYM67 11783. 5 K 0.74 1 6.72E04 44.8
327
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 15 2 12372. 2 N 0.22 8 3.31E- 02 25.6 LYM 13 2 12276. 1 K 0.69 6 1.12E02 36
LYM 16 2 12234. 4 N 0.23 6 3.39E02 30 LYM 13 8 12566. 1 K 0.65 9 1.33E02 28.9
LYM 14 1 12402. 4 N 0.22 6 4.06E02 24.5 LYM 11 9 12461. 1 K 0.67 1 1.72E02 31.2
LYM 13 4 12311. 2 N 0.22 6 4.65E02 24.2 LYM69 11853. 5 K 0.65 7 2.56E02 28.4
LYM 19 11751. 5 N 0.22 3 4.82E02 22.9 LYM 13 7 12151. 1 K 0.64 8 2.68E02 26.8
LYM 10 11744. 1 N 0.22 4 4.91E02 23.5 LYM 13 8 12561. 1 K 0.63 8 3.91E- 02 24.7
LYM1 11602. 1 N 0.22 4 5.06E02 23.2 LYM 10 5 12297. 1 K 0.64 6 4.88E02 26.3
LYM 13 2 12271. 4 N 0.22 1 5.78E02 21.8 LYM30 11913. 3 K 0.63 1 5.27E02 23.3
LYM 17 4 12411. 2 N 0.22 3 5.88E02 22.8 LYM53 11841. 1 K 0.64 1 5.90E02 25.3
LYM 14 0 12262. 3 N 0.22 1 6.40E02 21.4 LYM 11 1 12251. 1 K 0.62 7 6.03E02 22.5
LYM 11 9 12461. 4 N 0.22 7.17E02 21.3 LYM24 12061. 2 K 0.63 1 6.18E- 02 23.3
LYM4 11706. 5 N 0.21 9 8.19E- 02 20.4 LYM24 12064. 1 K 0.61 8 6.89E02 20.9
LYM 15 11611. 3 N 0.22 4 8.23E02 23.1 LYM25 4 12471. 2 K 0.61 5 7.20E02 20.3
LYM 13 0 12332. 2 N 0.22 2 8.28E02 22.3 LYM31 11923. 1 K 0.61 7 8.28E02 20.6
LYM26 8 12483. 2 N 0.21 7 9.09E02 19.5 LYM57 12013. 5 K 0.61 7 8.35E02 20.7
LYM 17 4 12412. 1 N 0.22 9.27E02 20.8 LYM 10 5 12295. 2 K 0.62 8.37E02 21.2
LYM 16 2 12231. 1 N 0.21 7 1.07E- 01 19.4 LYM 10 5 12293. 1 K 0.61 1 8.53E02 19.5
LYM 19 11751. 4 N 0.21 8 1.07E- 01 19.8 LYM51 11893. 2 K 0.62 8.98E02 21.3
LYM 13 8 12561. 3 N 0.21 7 1.08E- 01 19.3 LYM62 12022. 1 K 0.61 2 9.67E02 19.7
LYM 14 1 12404. 4 N 0.21 7 1.08E- 01 19.3 LYM68 11942. 3 K 0.60 5 1.06E- 01 18.2
LYM 19 11753. 1 N 0.21 4 1.09E- 01 18.1 LYM 14 8 12174. 1 K 0.61 5 1.10E- 01 20.3
LYM 17 4 12411. 3 N 0.21 7 1.15E- 01 19.2 LYM 11 1 12254. 4 K 0.61 4 1.13E- 01 20.1
LYM 13 2 12273. 2 N 0.21 3 1.19E- 01 17.4 LYM26 8 12482. 3 K 0.61 6 1.16E- 01 20.4
LYM 17 11684. 4 N 0.21 4 1.19E- 01 17.9 LYM 11 1 12252. 2 K 0.60 9 1.28E- 01 19.1
LYM4 11705. 2 N 0.21 5 1.21E- 01 18.1 LYM67 11782. 5 K 0.60 2 1.28E- 01 17.6
LYM 15 11612. 3 N 0.21 7 1.25E- 01 19.3 LYM62 12023. 4 K 0.60 6 1.29E- 01 18.4
328
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM9 11632. 2 N 0.21 5 1.26E01 18.3 LYM 14 8 12172. 1 K 0.60 1 1.35E01 17.5
LYM 11 9 12462. 1 N 0.21 6 1.29E01 18.6 LYM 14 3 12524. 2 K 0.60 5 1.51E01 18.2
LYM21 11673. 1 N 0.21 3 1.36E01 17.4 LYM 13 8 12564. 1 K 0.61 6 1.54E01 20.4
LYM29 0 12501. 3 N 0.21 6 1.42E01 18.7 LYM 13 4 12311. 2 K 0.59 9 1.66E01 17.1
LYM 13 0 12334. 1 N 0.21 3 1.48E01 17.3 LYM26 11824. 6 K 0.60 2 1.76E01 17.6
LYM 17 11682. 1 N 0.21 7 1.52E01 19.2 LYM29 0 12504. 1 K 0.59 6 1.83E01 16.5
LYM 16 2 12231. 3 N 0.21 1 1.58E01 16.2 LYM95 12124. 4 K 0.59 1 1.85E01 15.5
LYM 10 0 12133. 1 N 0.21 1.59E01 15.8 LYM 15 3 12321. 2 K 0.59 5 1.94E01 16.4
LYM 19 11754. 1 N 0.21 1 1.60E01 15.9 LYM 17 0 12453. 2 K 0.58 5 2.40E01 14.3
LYM 14 8 12173. 1 N 0.21 4 1.61E01 17.8 LYM30 11913. 5 K 0.58 5 2.41E01 14.3
LYM 13 7 12153. 1 N 0.21 1.80E01 15.8 LYM 11 9 12462. 2 K 0.58 6 2.44E01 14.7
LYM 13 8 12562. 1 N 0.20 8 1.95E01 14.6 LYM 14 3 12524. 7 K 0.6 2.47E01 17.4
LYM 10 2 12221. 1 N 0.20 8 1.97E01 14.5 LYM 17 2 12302. 2 K 0.57 8 2.79E01 13
LYM 15 11612. 2 N 0.20 8 2.06E01 14.6 LYM68 11943. 2 K 0.58 3 2.80E01 14
LYM 13 11772. 1 N 0.20 9 2.08E01 14.9 LYM 13 2 12275. 1 K 0.58 5 2.80E01 14.3
LYM1 11601. 1 N 0.20 9 2.18E01 15.2 LYM66 11955. 2 K 0.57 5 2.85E01 12.4
LYM 14 3 12521. 1 N 0.20 7 2.19E01 14 LYM29 0 12502. 2 K 0.57 7 2.87E01 12.8
LYM 15 2 12371. 2 N 0.20 8 2.27E01 14.5 LYM 14 0 12261. 1 K 0.59 8 2.92E01 16.8
LYM28 9 12491. 4 N 0.20 6 2.34E01 13.6 LYM29 0 12502. 1 K 0.57 8 2.94E01 13
LYM1 11603. 2 N 0.20 5 2.45E01 13 LYM 13 4 12314. 2 K 0.57 5 2.95E01 12.4
LYM26 8 12483. 4 N 0.20 8 2.49E01 14.4 LYM62 12021. 1 K 0.57 9 3.02E01 13.2
LYM21 11672. 4 N 0.20 7 2.55E01 14 LYM 14 12052. 5 K 0.57 4 3.05E01 12.2
LYM28 9 12493. 6 N 0.20 5 2.58E01 12.7 LYM95 12121. 2 K 0.57 3 3.13E01 12
LYM21 11671. 2 N 0.20 6 2.59E01 13.3 LYM26 8 12481. 1 K 0.57 5 3.22E01 12.5
LYM 11 1 12251. 1 N 0.20 7 2.60E01 13.9 LYM69 11854. 2 K 0.57 3.32E01 11.5
LYM 11 9 12463. 2 N 0.20 5 2.61E01 12.9 LYM62 12022. 2 K 0.57 4 3.34E01 12.2
329
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 10 11744. 5 N 0.20 6 2.65E01 13.5 LYM30 11912. 7 K 0.57 4 3.35E01 12.3
LYM 14 8 12172. 1 N 0.20 9 2.78E01 15 LYM69 11853. 4 K 0.57 8 3.42E01 13
LYM 14 1 12404. 2 N 0.20 3 2.88E01 11.9 LYM 13 2 12275. 3 K 0.56 9 3.42E01 11.2
LYM 13 11771. 6 N 0.20 5 2.89E01 12.6 LYM 13 0 12333. 1 K 0.56 5 3.66E01 10.6
LYM 14 1 12404. 3 N 0.20 4 2.94E01 12.1 LYM 10 5 12294. 2 K 0.56 3 3.67E01 10.1
LYM 10 2 12222. 3 N 0.20 7 3.08E01 14.2 LYM31 11922. 3 K 0.56 7 3.69E01 10.8
LYM28 9 12491. 1 N 0.20 6 3.10E- 01 13.2 LYM 17 0 12453. 3 K 0.56 8 3.72E01 11.1
LYM 17 11681. 4 N 0.20 2 3.14E- 01 11.3 LYM25 4 12473. 1 K 0.56 3 4.05E01 10
LYM26 8 12482. 3 N 0.20 3 3.18E- 01 11.5 LYM31 11924. 4 K 0.57 4.08E01 11.4
LYM 16 2 12233. 2 N 0.20 2 3.39E01 11.3 LYM 15 2 12376. 1 K 0.56 4 4.22E01 10.3
LYM 17 4 12414. 2 N 0.20 1 3.47E01 10.8 LYM57 12012. 2 K 0.56 5 4.26E01 10.4
LYM 16 11624. 4 N 0.2 3.59E01 10.2 LYM 14 12051. 4 K 0.56 4.29E01 9.5
LYM 12 9 12573. 5 N 0.2 3.63E01 10.2 LYM 14 0 12261. 4 K 0.55 7 4.32E01 9
LYM29 0 12502. 4 N 0.20 2 3.73E01 11.1 LYM 13 0 12334. 1 K 0.55 8 4.46E01 9.1
LYM26 8 12482. 1 N 0.19 8 4.54E01 9 LYM 13 7 12154. 5 K 0.55 6 4.67E01 8.7
LYM 10 5 12294. 2 N 0.2 4.70E01 10 LYM 10 0 12131. 3 K 0.55 7 4.69E01 9
LYM 13 2 12275. 3 N 0.2 4.79E01 10 LYM53 11841. 2 K 0.55 8 4.74E01 9.2
LYM 19 11752. 2 N 0.19 7 4.82E01 8.5 LYM26 8 12483. 4 K 0.56 5 4.77E01 10.4
LYM 14 3 12524. 2 N 0.19 6 4.88E01 7.8 LYM68 11941. 3 K 0.55 5 4.80E01 8.6
LYM9 11633. 7 N 0.19 6 4.90E01 8.1 LYM 17 0 12452. 4 K 0.55 9 4.81E01 9.3
LYM 15 3 12321. 2 N 0.19 6 5.19E- 01 7.7 LYM 14 8 12173. 1 K 0.55 5 4.86E01 8.5
LYM 11 1 12254. 4 N 0.19 5 5.30E01 7.1 LYM26 8 12482. 1 K 0.55 8 4.94E01 9.1
LYM 13 2 12275. 1 N 0.19 4 5.34E01 7 LYM26 11821. 2 K 0.56 5.00E01 9.4
LYM 14 3 12521. 2 N 0.19 4 5.39E01 6.9 LYM31 11921. 3 K 0.55 8 5.05E01 9.1
LYM 10 11742. 1 N 0.19 6 5.54E01 7.8 LYM31 11923. 4 K 0.55 4 5.08E01 8.3
LYM 10 2 12222. 6 N 0.19 6 5.56E01 7.9 LYM 15 3 12322. 1 K 0.56 5.10E- 01 9.5
330
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 13 11771. 9 N 0.19 3 5.98E01 6.2 LYM30 11913. 4 K 0.54 9 5.23E01 ΊΑ
LYM 11 3 12442. 1 N 0.19 2 6.01E01 5.9 LYM53 11844. 2 K 0.55 2 5.40E01 7.9
LYM2 11693. 3 N 0.19 2 6.18E01 5.7 LYM 13 8 12561. 3 K 0.55 1 5.44E01 7.7
LYM 14 0 12261. 4 N 0.19 1 6.66E01 4.9 LYM 15 2 12372. 1 K 0.55 2 5.48E01 7.9
LYM 16 11622. 2 N 0.19 6.70E01 4.8 LYM24 12061. 4 K 0.54 8 5.49E01 7.2
LYM 13 0 12331. 3 N 0.18 9 7.24E01 4.2 LYM 17 2 12304. 2 K 0.55 2 5.50E01 7.8
LYM 10 0 12131. 3 N 0.18 9 7.44E01 3.9 LYM 14 8 12174. 2 K 0.55 2 5.65E01 7.9
LYM2 11692. 3 N 0.18 8 7.48E01 3.6 LYM25 4 12474. 3 K 0.55 5.67E01 7.6
LYM 13 8 12564. 1 N 0.18 8 7.56E01 3.5 LYM51 11891. 1 K 0.54 3 5.74E01 6.2
LYM 11 1 12252. 2 N 0.18 9 7.61E01 4.2 LYM 15 2 12371. 2 K 0.54 8 5.75E01 7.2
LYM 10 6 12141. 4 N 0.18 8 7.62E01 3.5 LYM43 11793. 2 K 0.55 5.77E01 7.6
LYM 14 1 12404. 1 N 0.18 7 7.90E01 3 LYM 15 2 12373. 1 K 0.55 5.98E01 7.6
LYM28 9 12492. 2 N 0.18 7 8.07E01 2.9 LYM25 4 12474. 4 K 0.54 6 6.00E01 6.7
LYM 15 3 12324. 2 N 0.18 7 8.23E01 2.9 LYM67 11781. 5 K 0.54 2 6.09E01 6
LYM 17 11684. 5 N 0.18 5 8.58E01 2 LYM43 11791. 5 K 0.54 5 6.10E01 6.6
LYM 11 9 12461. 1 N 0.18 5 8.84E01 1.7 LYM51 11892. 1 K 0.54 3 6.25E01 6.2
LYM 14 3 12523. 4 N 0.18 5 8.92E01 1.6 LYM 10 0 12131. 2 K 0.54 1 6.31E01 5.8
LYM9 11633. 2 N 0.18 4 9.21E01 1.3 LYM 14 3 12521. 2 K 0.53 9 6.33E01 5.4
LYM 17 11683. 1 N 0.18 3 9.35E01 0.9 LYM 16 2 12231. 1 K 0.53 9 6.33E01 5.4
LYM 10 6 12142. 2 N 0.18 2 9.73E01 0.4 LYM 14 3 12521. 1 K 0.53 9 6.47E01 5.4
LYM22 11764. 1 N 0.18 2 9.75E01 0.4 LYM67 11782. 6 K 0.53 9 6.49E01 5.4
LYM22 11762. 1 N 0.18 2 9.78E01 0.3 LYM53 11843. 2 K 0.54 6.70E01 5.5
LYM 14 0 12264. 1 N 0.18 2 9.80E01 0.3 LYM26 11824. 5 K 0.53 6 6.75E01 4.7
LYM 15 3 12323. 2 N 0.18 2 9.81E01 0.3 LYM 13 0 12332. 1 K 0.54 2 6.78E01 5.9
LYM 10 6 12144. 4 N 0.18 2 9.82E01 0.3 LYM66 11952. 1 K 0.53 5 6.92E01 4.6
LYM 10 5 12294. 3 N 0.18 2 9.87E01 0.2 LYM 10 0 12133. 3 K 0.53 3 7.11E01 4.2
331
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
CONTR OL N 0.18 2 0 LYM29 0 12502. 4 K 0.53 4 7.21E- 01 4.4
LYM 14 3 12524. 7 O 2.00 8 1.50E- 05 58.2 LYM 16 2 12234. 3 K 0.53 3 7.24E01 4.2
LYM 14 8 12171. 2 O 2.01 4 2.00E05 58.6 LYM 17 4 12414. 3 K 0.53 3 7.34E01 4.2
LYM 13 0 12333. 1 o 1.85 1 7.90E05 45.8 LYM 14 3 12523. 4 K 0.53 2 7.42E01 3.9
LYM 10 11741. 2 o 2.33 9 1.39E- 04 84.2 LYM 14 12051. 1 K 0.53 1 7.52E01 3.8
LYM4 11706. 5 o 1.75 9 2.95E04 38.5 LYM 14 0 12262. 3 K 0.53 1 7.59E01 3.8
LYM 10 2 12222. 2 o 1.76 1 3.14E- 04 38.7 LYM24 12063. 3 K 0.52 9 7.68E01 3.5
LYM1 11602. 1 o 1.74 7 3.45E04 37.5 LYM43 11791. 4 K 0.53 7.70E01 3.7
LYM 10 5 12293. 1 o 1.73 5 4.36E04 36.6 LYM 14 8 12171. 2 K 0.52 9 7.79E01 3.4
LYM 10 11744. 1 o 1.73 1 4.44E04 36.3 LYM51 11894. 2 K 0.52 9 7.80E01 3.5
LYM 16 2 12234. 3 o 1.69 6 6.35E04 33.6 LYM 17 4 12411. 3 K 0.52 7 8.03E01 3
LYM 14 0 12262. 3 o 1.62 2.10E03 27.6 LYM 15 3 12323. 2 K 0.52 7 8.05E01 3
LYM 13 2 12271. 4 o 1.61 8 2.28E03 27.4 LYM26 8 12483. 2 K 0.52 6 8.15E- 01 2.9
LYM 15 11614. 3 o 1.61 1 2.52E03 26.9 LYM 16 2 12231. 3 K 0.52 7 8.18E- 01 3
LYM 15 2 12372. 2 o 1.69 8.69E03 33.1 LYM 13 4 12313. 2 K 0.52 3 8.47E01 2.3
LYM1 11602. 6 o 2.43 5 9.41E03 91.7 LYM 13 7 12151. 2 K 0.52 3 8.53E01 2.3
LYM 11 9 12461. 4 o 1.55 2 1.28E- 02 22.2 LYM 14 12054. 2 K 0.52 2 8.56E01 2.1
LYM 13 2 12273. 2 o 1.61 5 1.84E02 27.2 LYM 13 2 12271. 4 K 0.52 2 8.70E01 2
LYM 13 0 12334. 1 o 1.63 2.12E02 28.4 LYM26 11824. 3 K 0.52 8.83E01 1.7
LYM 10 0 12133. 1 o 1.49 9 2.74E02 18.1 LYM68 11942. 2 K 0.52 8.89E01 1.6
LYM28 9 12493. 2 o 1.81 8 3.54E02 43.2 LYM 13 4 12312. 3 K 0.51 9 9.12E01 1.4
LYM 16 2 12231. 3 o 1.52 6 3.61E- 02 20.2 LYM57 12012. 6 K 0.51 9 9.13E01 1.4
LYM 11 9 12463. 2 o 1.66 6 4.22E02 31.2 LYM68 11941. 4 K 0.51 8 9.13E01 1.3
LYM 13 8 12561. 1 o 2.01 6 5.07E02 58.8 LYM95 12124. 5 K 0.51 8 9.25E01 1.2
LYM 17 11684. 4 o 1.54 6 5.44E02 21.7 LYM 10 0 12133. 1 K 0.51 7 9.31E01 1
LYM1 11603. 2 o 1.58 4 5.79E02 24.8 LYM 11 9 12461. 4 K 0.51 6 9.42E01 1
332
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 14 1 12404. 2 O 1.43 4 7.37E02 13 LYM 15 2 12372. 2 K 0.51 4 9.65E01 0.5
LYM 19 11751. 5 o 1.66 4 1.05E01 31 LYM 14 0 12264. 1 K 0.51 4 9.70E01 0.5
LYM26 8 12483. 2 o 1.50 2 1.15E01 18.3 LYM57 12013. 3 K 0.51 4 9.72E01 0.4
LYM9 11632. 1 o 2.06 9 1.20E01 63 LYM 13 7 12152. 1 K 0.51 3 9.74E01 0.4
LYM28 9 12493. 6 o 1.40 3 1.25E01 10.5 LYM30 11912. 6 K 0.51 3 9.76E01 0.4
LYM1 11604. 4 o 1.81 6 1.26E01 43 LYM3 12041. 1 K 0.51 3 9.85E01 0.3
LYM 14 8 12174. 1 o 1.81 1 1.28E01 42.6 LYM 11 9 12462. 1 K 0.51 2 9.90E01 0.2
LYM 14 1 12402. 4 o 1.8 1.35E01 41.8 LYM26 11824. 1 K 0.51 2 9.97E01 0
LYM 10 11742. 2 o 1.74 1 1.42E01 37.1 LYM62 12022. 4 K 0.51 2 9.97E01 0
LYM 13 11771. 6 o 1.45 1.49E01 14.2 LYM 10 5 12294. 3 K 0.51 2 9.97E01 0
LYM 11 9 12462. 2 o 2.12 7 1.57E01 67.5 CONTR OL K 0.51 1 0
LYM 10 2 12221. 1 o 1.39 2 1.62E01 9.6 LYM 11 1 12252. 2 L 4.3 3.60E05 126.4
LYM 19 11753. 1 o 1.58 6 1.69E01 24.9 LYM 14 8 12174. 1 L 3.57 9 4.94E04 88.4
LYM9 11632. 2 o 1.42 4 1.70E01 12.1 LYM 11 9 12462. 1 L 3.12 5 7.46E03 64.5
LYM 17 4 12411. 2 o 1.75 3 1.79E01 38.1 LYM 10 0 12131. 2 L 3.04 1 1.01E02 60.1
LYM 17 11681. 4 o 1.38 5 1.88E01 9.1 LYM 13 8 12561. 1 L 3.06 2 1.03E02 61.2
LYM 15 11612. 2 o 1.48 3 2.29E01 16.8 LYM43 11791. 5 L 2.89 8 1.80E02 52.6
LYM 14 3 12521. 1 o 1.40 7 2.32E01 10.8 LYM 13 4 12314. 2 L 2.86 6 2.55E02 50.9
LYM 19 11754. 1 o 1.46 4 2.44E01 15.3 LYM 13 8 12561. 3 L 2.84 5 3.12E02 49.8
LYM9 11633. 7 o 1.54 2.49E01 21.3 LYM53 11841. 1 L 2.77 8 4.04E02 46.2
LYM 13 8 12562. 1 o 1.36 4 2.52E01 7.4 LYM26 8 12482. 3 L 2.77 7 4.10E02 46.2
LYM 13 0 12332. 2 o 1.67 5 2.61E01 31.9 LYM29 0 12502. 4 L 2.75 6 5.17E02 45.1
LYM 11 9 12462. 1 o 1.81 2 2.70E01 42.7 LYM 14 3 12524. 2 L 2.7 5.53E02 42.2
LYM 14 3 12524. 2 o 1.48 2 2.87E01 16.7 LYM51 11893. 4 L 2.78 2 6.14E02 46.4
LYM 17 4 12414. 3 o 1.87 1 3.05E01 47.3 LYM 13 7 12151. 1 L 2.69 8 6.26E02 42
LYM 13 8 12561. 3 o 1.81 6 3.10E01 43 LYM31 11923. 4 L 2.66 5 6.28E02 40.3
333
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 11 3 12442. 1 O 1.35 5 3.16E01 6.7 LYM 14 3 12524. 7 L 2.88 3 6.35E02 51.8
LYM21 11673. 1 o 1.47 1 3.28E01 15.9 LYM68 11942. 3 L 2.65 9 7.46E02 40
LYM 15 11612. 3 o 1.63 8 3.31E01 29 LYM 11 9 12461. 1 L 2.85 1 7.88E02 50.1
LYM 13 4 12311. 2 o 1.58 5 3.39E01 24.8 LYM68 11941. 3 L 2.63 1 7.90E02 38.5
LYM 14 1 12404. 3 o 1.53 2 3.45E01 20.7 LYM 14 8 12171. 2 L 2.59 5 9.52E02 36.6
LYM 19 11751. 4 o 1.65 6 3.52E01 30.4 LYM57 12013. 5 L 2.59 2 9.88E02 36.4
LYM2 11692. 3 o 1.35 8 3.74E01 7 LYM 11 1 12254. 3 L 2.67 7 1.14E01 40.9
LYM 12 9 12573. 5 o 1.34 3 3.76E01 5.7 LYM69 11853. 5 L 2.54 5 1.23E01 34
LYM4 11705. 2 o 1.52 3 3.80E01 19.9 LYM30 11912. 6 L 2.52 7 1.45E01 33
LYM 16 2 12231. 1 o 1.58 4 3.81E01 24.7 LYM 14 0 12264. 1 L 2.49 5 1.50E01 31.3
LYM 15 2 12371. 2 o 1.53 8 4.01E01 21.1 LYM 15 2 12372. 1 L 2.55 8 1.54E01 34.6
LYM 15 11611. 3 o 1.69 4 4.12E01 33.4 LYM68 11943. 2 L 2.48 8 1.58E01 31
LYM21 11671. 2 o 1.50 5 4.27E01 18.5 LYM43 11791. 4 L 2.45 4 1.80E01 29.2
LYM28 9 12491. 1 o 1.67 4.28E01 31.5 LYM62 12021. 1 L 2.44 9 1.93E01 28.9
LYM28 9 12491. 4 o 1.42 3 4.32E01 12.1 LYM53 11844. 2 L 2.46 1 1.95E01 29.6
LYM 14 1 12404. 4 o 1.56 4.38E01 22.9 LYM30 11913. 5 L 2.44 3 1.99E01 28.6
LYM 16 2 12234. 4 o 1.76 8 4.46E01 39.2 LYM 13 7 12154. 5 L 2.43 8 2.03E01 28.4
LYM 14 8 12173. 1 o 1.60 5 4.55E01 26.4 LYM 17 0 12453. 2 L 2.39 6 2.19E01 26.2
LYM29 0 12501. 3 o 1.43 3 4.56E01 12.8 LYM 11 9 12462. 2 L 2.39 2.40E01 25.8
LYM 10 2 12222. 3 o 1.60 5 5.03E01 26.4 LYM 11 1 12254. 4 L 2.39 9 2.43E01 26.3
LYM 17 4 12411. 3 o 1.49 1 5.04E01 17.4 LYM 17 2 12301. 2 L 2.36 5 2.52E01 24.5
LYM 17 4 12412. 1 o 1.55 4 5.23E01 22.4 LYM 11 1 12251. 3 L 2.35 9 2.67E01 24.2
LYM26 8 12483. 4 o 1.43 4 5.36E01 13 LYM51 11893. 2 L 2.33 2 2.92E01 22.8
LYM 11 1 12251. 1 o 1.49 8 5.37E01 18 LYM29 0 12502. 2 L 2.35 7 2.97E01 24.1
LYM21 11672. 4 o 1.46 6 5.47E01 15.4 LYM 10 5 12294. 3 L 2.30 5 3.15E01 21.3
LYM29 0 12502. 4 o 1.46 9 5.82E01 15.7 LYM 13 0 12332. 2 L 2.29 4 3.24E01 20.8
334
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 11744. 5 O 1.44 1 5.83E01 13.5 LYM68 11942. 2 L 2.29 8 3.35E01 21
LYM13 11772. 1 o 1.35 2 5.92E01 6.5 LYM26 8 12481. 1 L 2.27 5 3.51E- 01 19.7
LYM17 11684. 5 o 1.31 4 6.05E01 3.5 LYM10 5 12295. 2 L 2.27 7 3.56E01 19.9
LYM17 11682. 1 o 1.53 6 6.12E- 01 20.9 LYM13 0 12331. 3 L 2.24 1 3.81E- 01 18
LYM26 8 12482. 3 o 1.34 8 6.33E01 6.2 LYM14 8 12173. 1 L 2.24 7 3.93E01 18.3
LYM16 11624. 4 o 1.30 9 6.51E- 01 3.1 LYM15 2 12376. 1 L 2.24 6 3.97E01 18.2
LYM10 5 12294. 2 o 1.53 6 6.73E01 21 LYM29 0 12501. 3 L 2.23 5 4.07E01 17.7
LYM17 11683. 1 o 1.30 6 6.85E01 2.9 LYM57 12012. 2 L 2.22 5 4.17E01 17.1
LYM13 7 12153. 1 o 1.36 7 7.39E01 7.7 LYM13 2 12276. 1 L 2.21 6 4.40E01 16.6
LYM11 1 12252. 2 o 1.43 7 7.64E01 13.1 LYM14 12052. 4 L 2.20 1 4.53E01 15.9
LYM10 11742. 1 o 1.41 8 7.68E01 11.7 LYM13 7 12152. 1 L 2.20 4 4.55E01 16
LYM10 0 12131. 3 o 1.35 1 8.06E01 6.4 LYM62 12022. 1 L 2.19 5 4.65E01 15.5
LYM17 4 12414. 2 o 1.28 4 8.53E01 1.1 LYM10 0 12134. 1 L 2.18 7 4.81E01 15.1
LYM9 11633. 2 o 1.32 8.63E01 4 LYM26 11824. 6 L 2.17 7 4.90E01 14.6
LYM16 2 12233. 2 o 1.31 5 8.71E- 01 3.6 LYM57 12012. 6 L 2.16 9 5.11E- 01 14.2
LYM14 8 12172. 1 o 1.34 9 8.73E01 6.3 LYM53 11842. 4 L 2.17 9 5.18E- 01 14.7
LYM26 8 12482. 1 o 1.31 9.06E01 3.2 LYM67 11783. 5 L 2.16 2 5.19E- 01 13.8
LYM14 0 12261. 4 o 1.28 7 9.25E01 1.3 LYM13 2 12271. 4 L 2.15 7 5.24E01 13.5
LYM29 0 12502. 1 o 1.30 1 9.27E01 2.5 LYM10 0 12131. 3 L 2.14 1 5.42E01 12.7
LYM1 11601. 1 o 1.28 9.68E01 0.8 LYM15 2 12372. 2 L 2.13 2 5.59E01 12.2
LYM22 11762. 1 o 1.27 9.99E01 0 LYM13 8 12562. 1 L 2.12 4 5.80E01 11.8
CONTR OL o 1.27 0 LYM43 11792. 2 L 2.11 9 6.05E01 11.6
LYM14 3 12524. 7 P 2.58 1 6.00E06 38 LYM51 11894. 2 L 2.09 7 6.19E- 01 10.4
LYM14 8 12171. 2 P 2.42 2 1.00E- 04 29.5 LYM13 0 12334. 1 L 2.08 2 6.35E01 9.6
LYM14 8 12174. 1 P 2.32 4 1.00E- 04 24.2 LYM43 11793. 2 L 2.09 2 6.44E01 10.1
LYM4 11706. 5 P 2.30 2 1.40E- 04 23.1 LYM13 4 12312. 4 L 2.08 2 6.55E01 9.6
335
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 11744. 1 P 2.29 7 1.80E04 22.8 LYM14 12051. 4 L 2.07 7 6.58E01 9.4
LYM10 5 12293. 1 P 2.29 9 2.18E04 22.9 LYM11 9 12461. 4 L 2.07 2 6.66E01 9.1
LYM10 11742. 2 P 2.36 4 3.58E04 26.4 LYM13 2 12275. 1 L 2.06 5 6.78E01 8.7
LYM10 2 12222. 2 P 2.24 3 6.39E04 19.9 LYM30 11912. 7 L 2.05 7 6.96E01 8.3
LYM13 2 12273. 2 P 2.21 5 6.83E04 18.4 LYM16 2 12231. 3 L 2.05 6 7.00E01 8.2
LYM13 2 12271. 4 P 2.21 7.22E04 18.2 LYM13 7 12153. 1 L 2.05 4 7.02E01 8.1
LYM13 0 12333. 1 P 2.37 4 9.53E04 26.9 LYM25 4 12474. 4 L 2.06 6 7.04E01 8.8
LYM14 0 12262. 3 P 2.18 6 1.21E03 16.9 LYM14 3 12521. 2 L 2.04 9 7.08E01 7.8
LYM1 11602. 1 P 2.25 3 3.80E03 20.4 LYM10 0 12133. 3 L 2.03 5 7.35E01 7.1
LYM16 2 12234. 3 P 2.29 2 6.47E03 22.6 LYM30 11913. 3 L 2.02 7 7.48E01 6.7
LYM13 0 12334. 1 P 2.19 3 9.35E03 17.3 LYM68 11941. 4 L 2.01 3 7.74E01 6
LYM19 11751. 5 P 2.25 4 9.64E03 20.5 LYM15 2 12371. 2 L 2.01 2 7.89E01 5.9
LYM13 11771. 6 P 2.07 8 1.10E02 11.1 LYM67 11782. 4 L 1.99 1 8.22E01 4.8
LYM28 9 12493. 2 P 2.34 7 1.26E02 25.5 LYM26 11824. 5 L 1.97 3 8.52E01 3.9
LYM11 9 12463. 2 P 2.16 6 1.42E02 15.8 LYM13 8 12564. 1 L 1.97 6 8.53E01 4
LYM10 11741. 2 P 2.72 9 1.57E02 45.9 LYM51 11891. 1 L 1.97 2 8.55E01 3.8
LYM10 2 12221. 1 P 2.05 8 1.68E02 10.1 LYM15 2 12373. 1 L 1.97 6 8.56E01 4
LYM15 2 12372. 2 P 2.24 3 2.00E02 20 LYM95 12124. 4 L 1.96 2 8.74E01 3.3
LYM17 11684. 4 P 2.11 1 2.86E02 12.9 LYM26 8 12483. 2 L 1.96 2 8.79E01 3.3
LYM1 11602. 6 P 2.69 1 3.00E02 43.9 LYM31 11922. 3 L 1.95 9 8.80E01 3.1
LYM14 1 12404. 2 P 2.03 3.41E02 8.5 LYM17 2 12302. 2 L 1.94 8 9.08E01 2.6
LYM15 11612. 2 P 2.08 3 3.48E02 11.4 LYM14 12051. 1 L 1.94 4 9.11E01 2.4
LYM14 3 12524. 2 P 2.02 6 3.61E02 8.3 LYM69 11852. 4 L 1.93 9 9.21E01 2.1
LYM13 11772. 1 P 2.06 1 3.72E02 10.2 LYM11 1 12251. 1 L 1.93 6 9.27E01 1.9
LYM14 3 12521. 1 P 2.05 4 4.46E02 9.8 LYM66 11954. 4 L 1.92 2 9.59E01 1.2
LYM10 0 12133. 1 P 2.12 4.61E02 13.4 LYM10 5 12297. 1 L 1.91 2 9.76E01 0.6
336
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM16 11624. 4 P 2.01 4 4.89E02 7.7 LYM14 0 12262. 3 L 1.90 6 9.87E01 0.3
LYM17 11681. 4 P 2.01 9 5.10E02 8 LYM29 0 12502. 1 L 1.90 6 9.88E01 0.3
LYM19 11753. 1 P 2.14 9 5.24E02 14.9 CONTR OL L 1.9 0
LYM13 8 12562. 1 P 2.00 8 6.33E02 7.3 LYM11 1 12252. 2 M 0.53 7 2.20E05 121
LYM1 11603. 2 P 2.09 6 8.89E02 12.1 LYM14 8 12174. 1 M 0.44 7 3.03E04 84
LYM9 11632. 1 P 2.65 5 9.51E02 42 LYM11 9 12462. 1 M 0.39 1 5.76E03 60.6
LYM11 9 12461. 4 P 2.17 2 9.96E02 16.1 LYM10 0 12131. 2 M 0.38 7.86E03 56.3
LYM12 9 12573. 5 P 1.98 9 1.00E01 6.3 LYM13 8 12561. 1 M 0.38 3 8.16E03 57.4
LYM19 11754. 1 P 2.12 5 1.17E01 13.6 LYM43 11791. 5 M 0.36 2 1.43E02 49
LYM17 4 12411. 2 P 2.28 7 1.23E01 22.3 LYM13 4 12314. 2 M 0.35 8 2.14E02 47.3
LYM11 3 12442. 1 P 2.05 4 1.24E01 9.8 LYM13 8 12561. 3 M 0.35 6 2.71E02 46.2
LYM14 1 12402. 4 P 2.33 1.29E01 24.6 LYM11 9 12461. 1 M 0.37 3 3.52E02 53.4
LYM15 11614. 3 P 2.23 2 1.30E01 19.4 LYM53 11841. 1 M 0.34 7 3.56E02 42.8
LYM28 9 12493. 6 P 2.05 1 1.31E01 9.7 LYM26 8 12482. 3 M 0.34 7 3.61E02 42.7
LYM9 11632. 2 P 2.11 3 1.36E01 13 LYM29 0 12502. 4 M 0.34 4 4.73E02 41.6
LYM13 8 12561. 1 P 2.47 1.39E01 32 LYM14 3 12524. 2 M 0.33 8 4.96E02 38.8
LYM11 9 12462. 2 P 2.51 9 1.48E01 34.7 LYM31 11923. 4 M 0.33 3 5.67E02 37
LYM9 11633. 7 P 2.10 2 1.55E01 12.4 LYM13 7 12151. 1 M 0.33 7 5.76E02 38.7
LYM16 2 12231. 1 P 2.16 3 1.88E01 15.6 LYM51 11893. 4 M 0.34 8 5.87E02 43
LYM16 2 12231. 3 P 2.12 8 1.99E01 13.8 LYM14 3 12524. 7 M 0.36 6.28E02 48.2
LYM4 11705. 2 P 2.12 7 2.10E01 13.8 LYM68 11942. 3 M 0.33 2 6.98E02 36.7
LYM14 1 12404. 3 P 2.09 8 2.18E01 12.2 LYM68 11941. 3 M 0.32 9 7.35E02 35.2
LYM17 4 12414. 3 P 2.42 4 2.25E01 29.6 LYM14 8 12171. 2 M 0.32 4 9.03E02 33.4
LYM1 11604. 4 P 2.31 6 2.37E01 23.8 LYM57 12013. 5 M 0.32 4 9.44E02 33.2
LYM19 11751. 4 P 2.19 9 2.40E01 17.6 LYM17 0 12453. 2 M 0.32 1 9.97E02 31.9
LYM28 9 12491. 4 P 2.03 3 2.41E01 8.7 LYM11 1 12254. 3 M 0.33 5 1.15E01 37.6
337
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM13 8 12561. 3 P 2.30 6 2.48E01 23.3 LYM69 11853. 5 M 0.31 8 1.20E01 30.8
LYM13 4 12311. 2 P 2.17 8 2.62E01 16.5 LYM30 11912. 6 M 0.31 6 1.45E01 29.9
LYM13 0 12332. 2 P 2.28 2.65E01 21.9 LYM14 0 12264. 1 M 0.31 2 1.48E01 28.2
LYM21 11673. 1 P 2.11 4 2.76E01 13 LYM15 2 12372. 1 M 0.32 1.56E01 31.5
LYM15 2 12371. 2 P 2.12 7 2.84E01 13.7 LYM68 11943. 2 M 0.31 1 1.58E01 27.9
LYM11 9 12462. 1 P 2.28 1 3.03E01 21.9 LYM43 11791. 4 M 0.30 7 1.81E01 26.1
LYM26 8 12483. 2 P 2.12 1 3.07E01 13.4 LYM62 12021. 1 M 0.30 6 1.96E01 25.9
LYM17 4 12414. 2 P 2.01 6 3.46E01 7.8 LYM53 11844. 2 M 0.30 8 1.99E01 26.5
LYM17 4 12411. 3 P 2.15 1 3.50E01 15 LYM30 11913. 5 M 0.30 5 2.03E01 25.6
LYM15 11612. 3 P 2.18 7 3.58E01 16.9 LYM13 7 12154. 5 M 0.30 5 2.08E01 25.3
LYM17 4 12412. 1 P 2.15 5 3.66E01 15.2 LYM11 9 12462. 2 M 0.29 9 2.48E01 22.9
LYM14 8 12173. 1 P 2.15 3 3.73E01 15.1 LYM11 1 12254. 4 M 0.3 2.52E01 23.3
LYM14 1 12404. 4 P 2.15 8 3.80E01 15.4 LYM17 2 12301. 2 M 0.29 6 2.60E01 21.6
LYM29 0 12501. 3 P 2.12 5 3.82E01 13.6 LYM13 2 12276. 1 M 0.29 5 2.66E01 21.5
LYM16 2 12234. 4 P 2.29 6 4.09E01 22.8 LYM11 1 12251. 3 M 0.29 5 2.78E01 21.2
LYM11 1 12251. 1 P 2.09 8 4.17E01 12.2 LYM51 11893. 2 M 0.29 1 3.06E01 19.9
LYM15 11611. 3 P 2.21 4 4.19E01 18.4 LYM29 0 12502. 2 M 0.29 5 3.12E01 21.2
LYM22 11762. 1 P 1.92 1 4.32E01 2.7 LYM67 11783. 5 M 0.29 2 3.23E01 20
LYM13 2 12275. 1 P 1.95 7 4.42E01 4.7 LYM10 5 12294. 3 M 0.28 8 3.31E01 18.5
LYM21 11671. 2 P 2.07 9 4.44E01 11.1 LYM13 0 12332. 2 M 0.28 7 3.41E01 17.9
LYM17 11684. 5 P 1.91 8 4.53E01 2.6 LYM68 11942. 2 M 0.28 7 3.54E01 18.1
LYM2 11692. 3 P 1.91 8 4.54E01 2.6 LYM26 8 12481. 1 M 0.28 4 3.71E01 16.9
LYM13 7 12153. 1 P 2.03 3 4.60E01 8.7 LYM10 5 12295. 2 M 0.28 5 3.77E01 17
LYM10 2 12222. 3 P 2.20 6 4.62E01 18 LYM13 0 12331. 3 M 0.28 4.04E01 15.2
LYM17 11683. 1 P 1.93 6 4.85E01 3.5 LYM14 8 12173. 1 M 0.28 1 4.20E01 15.5
LYM28 9 12491. 1 P 2.16 8 5.00E01 15.9 LYM15 2 12376. 1 M 0.28 1 4.24E01 15.4
338
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM10 11744. 5 P 2.06 5.04E01 10.1 LYM29 0 12501. 3 M 0.27 9 4.35E01 14.9
LYM1 11601. 1 P 2.07 5 5.18E01 10.9 LYM57 12012. 2 M 0.27 8 4.46E01 14.4
LYM26 8 12483. 4 P 2.04 9 5.28E01 9.5 LYM14 12052. 4 M 0.27 5 4.87E01 13.1
LYM17 11682. 1 P 2.15 4 5.33E01 15.2 LYM13 7 12152. 1 M 0.27 6 4.89E01 13.3
LYM21 11672. 4 P 2.07 1 5.40E01 10.7 LYM62 12022. 1 M 0.27 4 5.01E01 12.8
LYM11 1 12254. 4 P 1.92 9 5.68E01 3.2 LYM13 7 12153. 1 M 0.27 5 5.04E01 13.1
LYM13 11771. 9 P 1.97 4 5.76E01 5.5 LYM10 0 12134. 1 M 0.27 3 5.19E01 12.4
LYM26 8 12482. 3 P 1.97 4 5.94E01 5.5 LYM26 11824. 6 M 0.27 2 5.29E01 11.9
LYM2 11693. 3 P 1.92 9 5.99E01 3.1 LYM57 12012. 6 M 0.27 1 5.53E01 11.5
LYM29 0 12502. 4 P 2.02 5 6.17E01 8.3 LYM53 11842. 4 M 0.27 2 5.60E01 12
LYM14 0 12261. 4 P 1.94 7 6.59E01 4.1 LYM13 2 12271. 4 M 0.27 5.68E01 10.8
LYM26 8 12482. 1 P 1.96 9 6.73E01 5.3 LYM68 11941. 4 M 0.26 9 5.74E01 10.5
LYM14 8 12172. 1 P 2.06 9 6.76E01 10.6 LYM10 0 12131. 3 M 0.26 8 5.89E01 10.1
LYM10 11742. 1 P 1.99 9 6.93E01 6.9 LYM15 2 12372. 2 M 0.26 6 6.09E01 9.6
LYM19 11752. 2 P 1.95 4 6.98E01 4.5 LYM13 8 12562. 1 M 0.26 6 6.32E01 9.2
LYM14 3 12521. 2 P 1.91 1 7.08E01 2.2 LYM43 11792. 2 M 0.26 5 6.58E01 8.9
LYM10 5 12294. 2 P 2.02 5 7.30E01 8.3 LYM51 11894. 2 M 0.26 2 6.76E01 7.8
LYM11 1 12252. 2 P 2 7.59E01 6.9 LYM13 0 12334. 1 M 0.26 6.96E01 7
LYM10 0 12131. 3 P 1.94 7.90E01 3.7 LYM43 11793. 2 M 0.26 2 7.03E01 7.5
LYM15 3 12323. 2 P 1.89 3 7.92E01 1.2 LYM13 4 12312. 4 M 0.26 7.16E01 7
LYM16 2 12233. 2 P 1.92 7 7.99E01 3 LYM14 12051. 4 M 0.26 7.20E01 6.8
LYM14 3 12523. 4 P 1.91 8.45E01 2.1 LYM11 9 12461. 4 M 0.25 9 7.29E01 6.5
LYM2 11695. 3 P 1.88 5 8.49E01 0.8 LYM13 2 12275. 1 M 0.25 8 7.43E01 6.1
LYM15 3 12321. 2 P 1.91 5 8.77E01 2.4 LYM30 11912. 7 M 0.25 7 7.63E01 5.7
LYM9 11633. 2 P 1.91 3 8.81E01 2.3 LYM25 4 12474. 4 M 0.25 8 7.67E01 6.2
LYM13 0 12331. 3 P 1.88 6 9.18E01 0.9 LYM16 2 12231. 3 M 0.25 7 7.67E01 5.7
339
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM13 2 12275. 3 P 1.90 8 9.31E01 2 LYM14 3 12521. 2 M 0.25 6 7.77E01 5.3
LYM10 2 12222. 6 P 1.88 2 9.74E01 0.6 LYM26 8 12482. 1 M 0.25 7 7.87E01 5.7
LYM29 0 12502. 1 P 1.87 1 9.99E01 0 LYM10 0 12133. 3 M 0.25 4 8.07E01 4.6
CONTR OL P 1.87 0 LYM69 11854. 2 M 0.25 4 8.16E01 4.4
LYM10 3 12713. 5 A 95.4 46 6.40E05 3.7 LYM15 3 12321. 2 M 0.25 4 8.20E01 4.4
LYM20 11711. 2 A 94.1 99 1.22E03 2.3 LYM30 11913. 3 M 0.25 3 8.23E01 4.2
LYM51 11891. 1 A 93.9 81 1.89E03 2.1 LYM15 2 12371. 2 M 0.25 2 8.64E01 3.4
LYM11 0 12921. 7 A 94.0 61 1.99E03 2.2 LYM67 11782. 4 M 0.24 9 9.03E01 2.3
LYM30 11913. 3 A 93.9 36 2.18E03 2.1 LYM13 8 12564. 1 M 0.24 7 9.36E01 1.6
LYM31 11924. 4 A 93.8 65 2.88E03 2 LYM15 2 12373. 1 M 0.24 7 9.38E01 1.6
LYM56 13111. 5 A 93.8 43 2.90E03 2 LYM26 11824. 5 M 0.24 7 9.39E01 1.4
LYM82 12204. 2 A 93.8 24 3.63E03 1.9 LYM51 11891. 1 M 0.24 6 9.42E01 1.3
LYM95 12121. 2 A 94.2 94 3.66E03 2.4 LYM95 12124. 4 M 0.24 5 9.64E01 0.8
LYM30 11913. 4 A 94.5 32 5.55E03 2.7 LYM26 8 12483. 2 M 0.24 5 9.65E01 0.9
LYM14 5 12951. 9 A 93.6 12 6.11E03 1.7 LYM31 11922. 3 M 0.24 5 9.70E01 0.7
LYM95 12124. 6 A 93.5 99 6.49E03 1.7 LYM17 2 12302. 2 M 0.24 4 9.95E01 0.1
LYM12 8 12641. 3 A 93.5 73 6.95E03 1.7 CONTR OL M 0.24 3 0
LYM41 11834. 2 A 93.7 77 7.60E03 1.9 LYM11 1 12252. 2 N 0.36 5 8.67E04 57.1
LYM43 11791. 5 A 94.1 66 8.49E03 2.3 LYM14 8 12174. 1 N 0.31 2 1.65E02 34.3
LYM66 11954. 4 A 93.6 58 1.06E02 1.7 LYM69 11853. 5 N 0.29 5 5.60E02 27
LYM14 12051. 4 A 93.4 06 1.22E02 1.5 LYM13 8 12561. 1 N 0.29 6 6.19E02 27.2
LYM11 6 13202. 12 A 93.7 53 1.48E02 1.9 LYM11 9 12462. 1 N 0.29 8.42E02 24.7
LYM27 1 12721. 9 A 93.4 59 1.61E02 1.5 LYM10 0 12131. 2 N 0.28 8 8.55E02 23.7
LYM14 5 12954. 8 A 93.3 11 1.71E02 1.4 LYM14 3 12524. 2 N 0.28 6 9.40E02 22.8
LYM41 11832. 2 A 93.2 79 1.90E02 1.3 LYM68 11941. 3 N 0.28 1 1.21E01 21
LYM26 11821. 2 A 93.2 94 2.17E02 1.4 LYM11 9 12461. 1 N 0.29 5 1.24E01 26.9
340
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM53 11841. 1 A 93.6 75 2.30E02 1.8 LYM67 11783. 5 N 0.28 3 1.38E01 21.6
LYM27 1 12724. 7 A 93.5 39 2.83E02 1.6 LYM13 4 12314. 2 N 0.27 7 1.56E01 18.9
LYM23 2 13024. 7 A 93.3 05 2.83E02 1.4 LYM13 8 12561. 3 N 0.27 8 1.57E- 01 19.4
LYM27 1 12723. 2 A 93.1 62 3.14E- 02 1.2 LYM31 11923. 4 N 0.27 7 1.57E- 01 19
LYM67 11782. 6 A 94.3 35 3.97E02 2.5 LYM29 0 12502. 4 N 0.27 7 1.64E01 19
LYM11 0 12923. 8 A 94.0 14 4.09E02 2.1 LYM57 12013. 5 N 0.27 6 1.67E- 01 18.7
LYM15 6 12961. 7 A 93.7 81 4.22E02 1.9 LYM26 8 12482. 3 N 0.27 6 1.68E01 18.8
LYM88 12191. 1 A 93.4 38 4.39E02 1.5 LYM53 11841. 1 N 0.27 6 1.75E- 01 18.7
LYM23 2 13024. 6 A 93.0 9 4.49E02 1.1 LYM62 12021. 1 N 0.27 5 2.00E01 18.4
LYM23 9 13044. 8 A 93.0 69 4.51E02 1.1 LYM14 3 12524. 7 N 0.28 2.15E01 20.4
LYM23 9 13042. 9 A 94.2 42 5.48E02 2.4 LYM30 11913. 5 N 0.27 3 2.18E01 17.4
LYM10 3 12712. 8 A 93.6 97 7.12E- 02 1.8 LYM53 11844. 2 N 0.27 2 2.53E01 16.7
LYM67 11782. 5 A 93.3 1 7.48E02 1.4 LYM51 11893. 4 N 0.27 2 2.62E01 16.8
LYM26 11824. 5 A 93.2 3 9.64E02 1.3 LYM30 11912. 6 N 0.26 8 2.72E01 15.1
LYM24 12064. 1 A 92.9 77 1.09E- 01 1 LYM68 11942. 3 N 0.26 7 2.76E01 15
LYM24 12061. 4 A 93.5 87 1.10E01 1.7 LYM17 0 12453. 2 N 0.26 4 3.05E01 13.5
LYM26 11824. 6 A 93.6 26 1.16E01 1.7 LYM68 11943. 2 N 0.26 5 3.08E01 14
LYM28 5 12733. 9 A 93.4 76 1.19E- 01 1.6 LYM11 1 12254. 3 N 0.27 1 3.36E01 16.4
LYM99 12243. 2 A 93.2 27 1.26E01 1.3 LYM13 7 12151. 1 N 0.26 1 3.59E01 12.4
LYM66 11952. 2 A 92.7 47 1.33E01 0.8 LYM14 0 12264. 1 N 0.26 3.88E01 11.6
LYM82 12201. 5 A 93.0 06 1.35E01 1 LYM15 2 12372. 1 N 0.26 4 3.92E01 13.5
LYM95 12124. 4 A 93.5 98 1.41E01 1.7 LYM43 11791. 5 N 0.25 8 4.06E01 11
LYM26 11824. 1 A 94.0 62 1.54E01 2.2 LYM13 7 12154. 5 N 0.25 8 4.09E01 11
LYM53 11844. 2 A 92.9 49 1.58E01 1 LYM29 0 12502. 2 N 0.25 8 4.41E01 10.8
LYM23 8 12762. 8 A 92.6 61 1.75E- 01 0.7 LYM11 1 12251. 3 N 0.25 7 4.46E01 10.7
LYM57 12013. 3 A 93.0 63 1.82E01 1.1 LYM10 5 12295. 2 N 0.25 6 4.60E01 10.1
341
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM12 5 12934. 5 A 94.0 64 1.92E- 01 2.2 LYM11 1 12254. 4 N 0.25 5 4.96E01 9.7
LYM12 8 12641. 5 A 93.6 44 1.94E- 01 1.7 LYM26 8 12481. 1 N 0.25 3 5.27E01 8.6
LYM51 11894. 2 A 92.9 55 1.98E- 01 1 LYM51 11893. 2 N 0.25 1 5.42E01 8
LYM66 11955. 2 A 93.6 58 2.03E01 1.7 LYM51 11891. 1 N 0.25 1 5.54E01 7.9
LYM23 8 12763. 5 A 93.4 75 2.13E01 1.6 LYM68 11942. 2 N 0.25 1 5.61E- 01 8.1
LYM20 11712. 2 A 92.9 72 2.19E01 1 LYM17 2 12301. 2 N 0.25 5.79E01 7.6
LYM14 5 12953. 5 A 93.9 25 2.34E01 2 LYM13 7 12153. 1 N 0.24 9 5.93E01 7.3
LYM53 11843. 2 A 92.9 2.43E01 0.9 LYM13 8 12562. 1 N 0.24 9 6.03E01 6.9
LYM12 5 12932. 8 A 97.2 38 2.56E01 5.6 LYM43 11791. 4 N 0.24 9 6.08E01 6.9
LYM28 4 12883. 5 A 95.3 09 2.58E01 3.5 LYM10 5 12294. 3 N 0.24 8 6.13E- 01 6.7
LYM41 11831. 5 A 93.3 47 2.68E01 1.4 LYM14 8 12171. 2 N 0.24 8 6.13E- 01 6.7
LYM28 4 12884. 7 A 93.4 92 2.80E01 1.6 LYM10 0 12131. 3 N 0.24 8 6.13E- 01 6.6
LYM12 5 12934. 7 A 92.5 35 2.81E01 0.5 LYM62 12022. 1 N 0.24 7 6.26E01 6.4
LYM26 11824. 3 A 94.2 93 2.82E01 2.4 LYM13 2 12276. 1 N 0.24 9 6.26E01 6.9
LYM27 7 13104. 9 A 94.2 32 3.03E01 2.4 LYM13 0 12331. 3 N 0.24 7 6.36E01 6.1
LYM15 6 12963. 4 A 93.3 22 3.23E01 1.4 LYM26 11824. 6 N 0.24 8 6.42E01 6.5
LYM27 7 13101. 1 A 93.4 57 3.32E01 1.5 LYM14 12052. 4 N 0.24 5 6.80E01 5.5
LYM27 7 13105. 7 A 93.1 65 3.34E01 1.2 LYM15 2 12376. 1 N 0.24 6 6.82E01 5.6
LYM88 12194. 2 A 92.7 73 3.50E01 0.8 LYM43 11792. 2 N 0.24 6 6.97E01 5.7
LYM30 11912. 7 A 93.3 71 3.68E01 1.4 LYM10 0 12134. 1 N 0.24 5 7.03E01 5.3
LYM10 3 12712. 5 A 94.0 13 3.80E01 2.1 LYM57 12012. 2 N 0.24 4 7.15E- 01 4.8
LYM11 6 13204. 4 A 92.4 11 4.06E01 0.4 LYM10 5 12297. 1 N 0.24 3 7.31E- 01 4.7
LYM99 12244. 1 A 92.8 73 4.11E01 0.9 LYM13 7 12152. 1 N 0.24 2 7.68E01 3.9
LYM57 12013. 5 A 92.8 67 4.13E01 0.9 LYM15 2 12372. 2 N 0.24 2 7.69E01 3.9
LYM12 8 12641. 1 A 92.4 36 4.13E01 0.4 LYM10 0 12133. 3 N 0.24 1 7.86E01 3.6
LYM11 0 12924. 5 A 93.5 92 4.13E01 1.7 LYM11 9 12462. 2 N 0.24 1 7.88E01 3.7
342
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11953. 6 A 93.5 38 4.18E01 1.6 LYM24 12061. 2 N 0.24 1 7.97E01 3.6
LYM57 12012. 2 A 92.7 05 4.22E01 0.7 LYM14 3 12521. 2 N 0.24 8.16E- 01 3.1
LYM14 5 12952. 9 A 92.4 82 4.55E01 0.5 LYM14 8 12173. 1 N 0.24 8.22E01 3
LYM99 12241. 1 A 93.2 81 4.58E01 1.3 LYM69 11854. 2 N 0.23 9 8.47E01 2.5
LYM15 6 12961. 9 A 93.7 23 4.82E01 1.8 LYM14 12051. 4 N 0.23 7 8.82E01 2
LYM56 13112. 7 A 93.7 81 4.85E01 1.9 LYM13 2 12271. 4 N 0.23 7 8.82E01 2
LYM82 12201. 1 A 92.9 48 5.15E- 01 1 LYM29 0 12501. 3 N 0.23 7 8.83E01 2
LYM11 6 13202. 7 A 92.9 51 5.22E01 1 LYM26 8 12482. 1 N 0.23 8 8.83E01 2.3
LYM23 9 13041. 7 A 92.4 82 5.31E- 01 0.5 LYM15 2 12373. 1 N 0.23 7 9.00E01 1.9
LYM28 4 12884. 6 A 92.9 58 5.74E01 1 LYM25 4 12474. 4 N 0.23 7 9.03E01 1.9
LYM56 13112. 5 A 93.5 18 5.79E01 1.6 LYM68 11941. 4 N 0.23 6 9.24E01 1.3
LYM15 6 12963. 3 A 92.9 31 5.88E01 1 LYM13 0 12334. 1 N 0.23 5 9.24E01 1.2
LYM51 11893. 4 A 92.9 63 5.94E01 1 LYM11 1 12251. 1 N 0.23 5 9.41E01 1
LYM12 1 13211. 8 A 92.8 58 6.05E01 0.9 LYM14 12052. 5 N 0.23 5 9.44E01 0.9
LYM11 0 12923. 5 A 92.5 76 6.26E01 0.6 LYM66 11954. 4 N 0.23 5 9.46E01 1.1
LYM67 11782. 4 A 92.5 33 6.33E01 0.5 LYM14 0 12261. 1 N 0.23 4 9.57E01 0.8
LYM12 11871. 1 A 92.3 19 6.34E01 0.3 LYM15 2 12371. 2 N 0.23 4 9.76E01 0.4
LYM10 3 12713. 7 A 93.4 6 6.35E01 1.5 CONTR OL N 0.23 3 0
LYM62 12022. 4 A 93.3 15 6.56E01 1.4 LYM13 4 12314. 2 O 2.87 7 1.57E- 04 44.9
LYM43 11793. 2 A 92.8 4 6.72E01 0.9 LYM26 8 12482. 3 O 2.82 7 2.54E04 42.3
LYM69 11852. 4 A 92.3 47 6.74E01 0.3 LYM13 8 12561. 1 o 3.13 2 7.56E04 57.7
LYM31 11923. 1 A 93.0 48 6.91E- 01 1.1 LYM43 11791. 5 o 2.97 8 3.01E- 03 49.9
LYM99 12244. 2 A 92.2 12 7.08E01 0.2 LYM10 0 12131. 2 o 3.09 7 5.61E- 03 55.9
LYM95 12121. 4 A 92.3 76 7.27E01 0.4 LYM17 0 12453. 2 o 2.58 9 6.69E03 30.3
LYM43 11792. 2 A 92.6 2 7.34E01 0.6 LYM14 0 12264. 1 o 2.55 7 7.02E03 28.7
LYM14 12052. 4 A 92.7 27 7.41E- 01 0.7 LYM57 12013. 5 o 2.67 2 1.45E02 34.6
343
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11953. 1 A 92.6 66 7.44E01 0.7 LYM68 11942. 3 O 2.73 7 1.48E02 37.8
LYM 12 11872. 1 A 92.7 24 7.81E01 0.7 LYM 14 3 12524. 2 o 2.75 5 1.94E02 38.7
LYM23 8 12764. 8 A 92.2 36 7.83E01 0.2 LYM 14 8 12174. 1 o 3.67 2.35E02 84.8
LYM 11 6 13201. 8 A 92.4 84 7.84E01 0.5 LYM31 11923. 4 o 2.75 1 2.44E02 38.5
LYM82 12203. 3 A 92.1 75 8.22E01 0.1 LYM 13 0 12331. 3 o 2.36 3 2.49E02 19
LYM23 8 12761. 6 A 92.2 22 8.23E01 0.2 LYM69 11853. 5 o 2.57 2 4.76E02 29.5
LYM67 11781. 5 A 92.6 22 8.43E01 0.6 LYM29 0 12502. 4 o 2.80 9 5.25E02 41.4
LYM23 2 13024. 4 A 92.9 31 8.45E01 1 LYM 13 7 12151. 1 o 2.72 5.81E02 37
LYM67 11783. 5 A 92.1 82 8.54E01 0.1 LYM57 12012. 2 o 2.26 6 6.86E02 14.1
LYM88 12193. 1 A 92.1 08 8.99E01 0.1 LYM51 11893. 2 o 2.35 9 7.59E02 18.8
LYM20 11716. 3 A 92.2 57 9.05E01 0.2 LYM53 11841. 1 o 2.81 7 7.71E02 41.9
LYM 12 1 13214. 3 A 92.3 09 9.05E01 0.3 LYM 14 12052. 4 o 2.26 4 8.31E02 14
LYM23 2 13022. 1 A 92.2 36 9.28E01 0.2 LYM 13 2 12276. 1 o 2.27 4 9.43E02 14.5
LYM31 11921. 3 A 92.0 86 9.31E01 0 LYM 13 8 12561. 3 o 2.88 4 9.53E02 45.2
LYM27 1 12721. 8 A 92.2 1 9.39E01 0.2 LYM 14 8 12171. 2 o 2.63 8 1.02E01 32.8
LYM99 12243. 1 A 92.1 42 9.40E01 0.1 LYM68 11941. 4 o 2.22 3 1.03E01 11.9
LYM88 12193. 5 A 92.1 79 9.49E01 0.1 LYM 11 9 12462. 1 o 3.20 1 1.06E01 61.2
LYM 12 1 13211. 6 A 92.1 25 9.70E01 0.1 LYM 11 9 12462. 2 o 2.48 1 1.06E01 24.9
LYM69 11853. 5 A 92.0 63 9.73E01 0 LYM 13 7 12152. 1 o 2.22 6 1.08E01 12.1
LYM28 4 12882. 5 A 92.0 91 9.89E01 0 LYM68 11941. 3 o 2.67 3 1.27E01 34.6
LYM 12 5 12931. 5 A 92.0 65 9.94E01 0 LYM43 11791. 4 o 2.52 1.37E01 26.9
CONTR OL A 92.0 48 0 LYM 11 1 12252. 2 o 4.44 9 1.69E01 124
LYM95 12124. 4 B 0.39 1 1.15E01 8.6 LYM 13 0 12334. 1 o 2.17 9 1.70E01 9.7
LYM69 11852. 2 B 0.38 8 1.69E01 7.7 LYM 10 5 12294. 3 o 2.35 1.77E01 18.3
LYM51 11891. 1 B 0.42 1 3.86E01 16.9 LYM30 11913. 5 o 2.49 5 2.05E01 25.6
LYM66 11953. 6 B 0.37 6 4.19E01 4.3 LYM26 8 12481. 1 o 2.31 1 2.11E01 16.4
344
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM67 11782. 6 B 0.40 8 4.83E01 13.3 LYM 14 8 12173. 1 O 2.29 2.22E01 15.3
LYM66 11954. 4 B 0.37 2 5.30E01 3.2 LYM 10 0 12131. 3 o 2.16 8 2.24E01 9.2
LYM99 12244. 1 B 0.36 9 6.38E01 2.4 LYM68 11943. 2 o 2.55 9 2.28E01 28.9
LYM67 11782. 4 B 0.37 4 6.79E01 3.9 LYM 15 2 12372. 2 o 2.21 5 2.44E01 11.5
LYM99 12243. 1 B 0.36 5 8.06E01 1.3 LYM 13 7 12154. 5 o 2.42 6 2.44E01 22.1
LYM43 11793. 2 B 0.37 4 8.36E01 3.9 LYM 10 5 12295. 2 o 2.33 2.62E01 17.3
LYM31 11924. 4 B 0.36 9 9.06E01 2.5 LYM 13 0 12332. 2 o 2.42 4 2.81E01 22.1
LYM57 12013. 3 B 0.36 3 9.80E01 0.8 LYM 17 2 12301. 2 o 2.42 5 2.87E01 22.1
CONTR OL B 0.36 0 LYM29 0 12501. 3 o 2.27 2 2.90E01 14.4
LYM95 12124. 4 C 4.28 1 2.01E03 22.8 LYM68 11942. 2 o 2.35 5 3.00E01 18.6
LYM66 11953. 6 C 4.23 8 4.68E03 21.6 LYM62 12022. 1 o 2.26 6 3.17E01 14.1
LYM67 11782. 4 C 4.00 6 2.07E02 14.9 LYM57 12012. 6 o 2.23 2 3.21E01 12.4
LYM99 12244. 1 C 4.00 6 2.94E02 14.9 LYM 11 1 12254. 4 o 2.46 4 3.28E01 24
LYM99 12243. 2 C 3.96 9 3.28E02 13.9 LYM 11 1 12251. 3 o 2.40 4 3.30E01 21
LYM66 11954. 4 C 3.91 3 3.91E02 12.3 LYM30 11912. 6 o 2.56 3 3.48E01 29
LYM69 11852. 2 C 3.93 1 5.24E02 12.8 LYM51 11894. 2 o 2.14 3.52E01 7.8
LYM67 11782. 5 C 3.87 5 5.34E02 11.2 LYM53 11844. 2 o 2.52 1 3.61E01 26.9
LYM82 12203. 3 C 3.81 3 9.88E02 9.4 LYM 13 7 12153. 1 o 2.25 2 3.67E01 13.4
LYM88 12194. 2 C 3.79 4 1.08E01 8.8 LYM62 12021. 1 o 2.47 2 3.77E01 24.5
LYM51 11891. 1 C 3.81 3 1.95E01 9.4 LYM 13 2 12271. 4 o 2.22 1 4.01E01 11.8
LYM53 11841. 1 C 3.74 4 2.04E01 7.4 LYM51 11893. 4 o 2.82 2 4.03E01 42.1
LYM43 11791. 5 C 3.68 1 2.86E01 5.6 LYM 11 9 12461. 1 o 3.04 9 4.11E01 53.5
LYM99 12241. 1 C 3.65 3.67E01 4.7 LYM 15 2 12376. 1 o 2.31 4 4.14E01 16.5
LYM67 11782. 6 C 4.25 3.83E01 21.9 LYM 10 0 12134. 1 o 2.21 7 4.18E01 11.6
LYM53 11841. 2 C 3.63 1 4.57E01 4.2 LYM 11 1 12254. 3 o 2.78 9 4.58E01 40.4
LYM82 12201. 5 C 3.79 4 4.71E01 8.8 LYM 10 0 12133. 3 o 2.08 7 4.87E01 5.1
345
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM43 11793. 2 C 3.79 4 5.39E01 8.8 LYM14 3 12524. 7 O 2.93 4.89E01 47.6
LYM67 11783. 5 c 3.59 4 6.03E01 3.1 LYM15 2 12372. 1 o 2.57 2 4.90E01 29.5
LYM53 11842. 4 c 3.57 5 6.17E01 2.6 LYM14 3 12521. 2 o 2.07 3 5.09E01 4.4
LYM99 12243. 1 c 3.58 8 6.17E01 2.9 LYM14 12051. 4 o 2.14 8 5.20E01 8.2
LYM82 12201. 1 c 3.56 9 6.50E01 2.4 LYM29 0 12502. 2 o 2.38 3 5.23E01 20
LYM51 11893. 4 c 3.59 6.68E01 3 LYM67 11783. 5 o 2.30 7 5.53E01 16.2
LYM88 12193. 1 c 3.69 4 7.08E01 6 LYM26 11824. 6 o 2.20 5 5.59E01 11
LYM88 12193. 5 c 3.68 1 7.16E01 5.6 LYM13 4 12312. 4 o 2.11 6 5.72E01 6.5
LYM69 11854. 2 c 3.55 6 7.53E01 2 LYM13 2 12275. 1 o 2.06 7 6.20E01 4.1
LYM66 11955. 2 c 3.62 5 8.66E01 4 LYM53 11842. 4 o 2.28 9 6.36E01 15.3
LYM51 11892. 1 c 3.5 9.37E01 0.4 LYM43 11792. 2 o 2.17 4 6.56E01 9.4
CONTR OL c 3.48 5 0 LYM11 9 12461. 4 o 2.11 5 6.64E01 6.5
LYM11 6 13202. 12 D 0.37 9 1.40E05 41.9 LYM30 11912. 7 o 2.11 5 6.90E01 6.5
LYM67 11782. 6 D 0.33 7 4.39E04 26.2 LYM13 8 12562. 1 o 2.12 8 7.14E01 7.1
LYM12 8 12641. 5 D 0.36 4 8.83E04 36.4 LYM43 11793. 2 o 2.16 2 7.20E01 8.9
LYM20 11711. 2 D 0.36 3 8.90E04 36.1 LYM30 11913. 3 o 2.06 4 7.61E01 3.9
LYM23 8 12764. 8 D 0.33 4 7.05E03 25.3 LYM16 2 12231. 3 o 2.09 6 7.65E01 5.6
LYM88 12193. 1 D 0.29 8 2.70E02 11.8 LYM95 12124. 4 o 2.03 2 7.69E01 2.3
LYM12 11871. 3 D 0.29 8 3.76E02 11.8 LYM67 11782. 4 o 2.03 5 8.22E01 2.5
LYM11 6 13202. 7 D 0.32 1 3.92E02 20.2 LYM15 3 12321. 2 o 2.05 1 8.30E01 3.3
LYM23 9 13042. 9 D 0.33 5.21E02 23.8 LYM15 2 12371. 2 o 2.07 1 8.45E01 4.3
LYM53 11841. 1 D 0.30 3 7.50E02 13.5 LYM25 4 12474. 4 o 2.10 7 8.58E01 6.1
LYM26 11824. 3 D 0.31 2 8.07E02 17 LYM26 8 12482. 1 o 2.11 1 8.72E01 6.3
LYM99 12243. 1 D 0.34 8 8.18E02 30.4 LYM69 11854. 2 o 2.00 6 9.07E01 1
LYM31 11923. 4 D 0.28 9 1.00E01 8.3 LYM31 11922. 3 o 2.00 8 9.14E01 1.1
LYM31 11924. 4 D 0.29 7 1.21E01 11.4 LYM15 2 12373. 1 o 2.03 9.27E01 2.2
346
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11955. 2 D 0.28 9 1.36E- 01 8.5 LYM69 11852. 4 O 2.00 6 9.29E01 1
LYM53 11843. 2 D 0.28 7 1.41E- 01 7.7 LYM26 11824. 5 o 1.99 5 9.47E01 0.5
LYM26 11824. 6 D 0.32 7 1.42E- 01 22.4 LYM26 8 12483. 2 o 2.00 7 9.62E01 1.1
LYM28 5 12733. 9 D 0.38 1.57E- 01 42.3 CONTR OL o 1.98 6 0
LYM20 11716. 5 D 0.29 2 1.84E- 01 9.5 LYM68 11941. 3 P 2.99 1 4.57E04 24.7
LYM 10 3 12713. 5 D 0.34 6 1.85E- 01 29.6 LYM 13 4 12314. 2 P 2.97 4 5.82E04 24
LYM24 12061. 4 D 0.32 7 1.93E- 01 22.7 LYM 14 8 12174. 1 P 3.46 1 9.68E04 44.3
LYM 14 12051. 4 D 0.30 7 1.94E- 01 15 LYM57 12013. 5 P 2.90 1 1.36E- 03 20.9
LYM26 11824. 1 D 0.33 8 1.97E01 26.8 LYM26 8 12482. 3 P 2.94 5 2.74E03 22.8
LYM23 8 12763. 7 D 0.28 3 1.97E01 6.1 LYM31 11923. 4 P 2.94 4 2.83E03 22.7
LYM66 11954. 4 D 0.32 2 2.07E01 20.7 LYM 14 0 12264. 1 P 2.79 1 5.07E03 16.4
LYM 12 11872. 1 D 0.40 4 2.11E01 51.6 LYM 10 0 12131. 2 P 3.08 5 6.47E03 28.6
LYM99 12244. 2 D 0.28 3 2.45E01 6.2 LYM 13 0 12331. 3 P 2.71 2 1.54E02 13
LYM 12 11871. 1 D 0.33 4 2.71E01 25.1 LYM 14 8 12171. 2 P 2.74 8 1.78E02 14.5
LYM 12 8 12641. 3 D 0.32 5 2.98E01 21.7 LYM51 11893. 2 P 2.69 9 1.88E02 12.5
LYM23 9 13044. 8 D 0.30 2 3.23E01 13 LYM 13 8 12561. 1 P 3.15 4 2.51E02 31.5
LYM23 2 13024. 6 D 0.29 5 3.63E01 10.7 LYM69 11853. 5 P 2.96 8 2.79E02 23.7
LYM 10 3 12712. 8 D 0.30 5 3.64E01 14.3 LYM29 0 12502. 4 P 2.88 6 2.85E02 20.3
LYM95 12121. 2 D 0.33 2 3.79E01 24.5 LYM 17 0 12453. 2 P 2.70 3 2.98E02 12.7
LYM95 12124. 4 D 0.28 9 4.16E01 8.4 LYM 14 3 12524. 2 P 2.94 3 3.25E02 22.7
LYM69 11852. 2 D 0.28 1 4.94E01 5.2 LYM68 11942. 3 P 2.86 6 3.61E- 02 19.5
LYM 15 6 12963. 1 D 0.29 5.11E- 01 8.6 LYM53 11841. 1 P 2.97 1 4.36E02 23.9
LYM82 12201. 1 D 0.27 5 5.11E- 01 3.1 LYM57 12012. 2 P 2.62 9 5.16E- 02 9.6
LYM67 11782. 4 D 0.28 8 5.17E- 01 8.1 LYM 11 9 12462. 1 P 3.13 4 6.34E02 30.7
LYM30 11912. 6 D 0.29 5.57E01 8.6 LYM 13 7 12152. 1 P 2.59 6 8.59E02 8.2
LYM24 12064. 1 D 0.3 5.74E01 12.5 LYM62 12022. 1 P 2.63 8.66E02 9.6
347
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM26 11824. 5 D 0.30 9 6.01E01 15.9 LYM 13 8 12561. 3 P 3.01 4 8.88E02 25.6
LYM23 2 13024. 7 D 0.33 6.01E01 23.6 LYM 13 7 12151. 1 P 2.92 6 9.19E02 22
LYM30 11912. 7 D 0.27 7 6.08E01 3.7 LYM 13 7 12153. 1 P 2.70 2 9.26E02 12.6
LYM26 11821. 2 D 0.28 6 6.37E01 7.3 LYM 13 0 12332. 2 P 2.67 3 1.06E01 11.4
LYM 10 3 12711. 8 D 0.27 3 6.74E01 2.5 LYM43 11791. 5 P 2.94 9 1.06E01 22.9
LYM 10 3 12712. 5 D 0.27 3 6.81E01 2.3 LYM43 11791. 4 P 2.73 9 1.20E01 14.2
LYM 11 6 13204. 4 D 0.31 7.10E01 16.3 LYM 11 1 12252. 2 P 3.85 1.23E01 60.5
LYM62 12023. 2 D 0.27 3 7.33E01 2.2 LYM 10 5 12295. 2 P 2.70 5 1.58E01 12.8
LYM 12 8 12641. 1 D 0.27 9 7.45E01 4.4 LYM 10 0 12131. 3 P 2.55 1 1.66E01 6.3
LYM57 12012. 2 D 0.27 1 7.62E01 1.4 LYM30 11913. 5 P 2.82 3 1.67E01 17.7
LYM66 11953. 6 D 0.27 7.80E01 1.3 LYM 13 7 12154. 5 P 2.67 4 1.74E01 11.5
LYM31 11921. 3 D 0.26 9 8.84E01 1 LYM 10 0 12134. 1 P 2.62 5 1.75E01 9.4
LYM30 11913. 5 D 0.27 3 8.96E01 2.4 LYM 11 9 12462. 2 P 2.68 3 1.81E01 11.8
LYM 15 6 12961. 9 D 0.26 8 9.20E01 0.6 LYM 13 0 12334. 1 P 2.54 3 2.00E01 6
LYM 14 5 12951. 9 D 0.26 7 9.76E01 0.2 LYM30 11912. 6 P 2.79 4 2.04E01 16.5
CONTR OL D 0.26 7 0 LYM68 11941. 4 P 2.53 5 2.13E01 5.7
LYM26 11824. 3 E 8.81 3 2.28E03 8.7 LYM 10 5 12294. 3 P 2.68 5 2.22E01 11.9
LYM82 12201. 1 E 9.12 5 4.62E03 12.5 LYM68 11943. 2 P 2.85 3 2.25E01 18.9
LYM28 5 12733. 9 E 9 7.67E03 11 LYM26 8 12481. 1 P 2.67 2 2.31E01 11.4
LYM24 12064. 1 E 8.62 5 9.72E03 6.4 LYM 11 1 12251. 3 P 2.68 9 2.51E01 12.1
LYM53 11841. 1 E 8.87 5 1.34E02 9.4 LYM 14 12052. 4 P 2.60 9 2.63E01 8.8
LYM 12 11872. 1 E 8.56 3 2.18E02 5.6 LYM 13 4 12312. 4 P 2.51 8 2.68E01 4.9
LYM95 12121. 2 E 9.31 3 2.37E02 14.8 LYM 11 1 12254. 4 P 2.75 3 2.72E01 14.7
LYM31 11923. 4 E 8.75 2.50E02 7.9 LYM57 12012. 6 P 2.52 4 2.86E01 5.2
LYM43 11791. 4 E 8.75 2.50E02 7.9 LYM62 12021. 1 P 2.82 7 2.91E01 17.8
LYM99 12243. 2 E 8.75 2.50E02 7.9 LYM 15 2 12372. 2 P 2.62 3 3.12E01 9.3
348
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 12 8 12641. 5 E 9.18 8 3.04E02 13.3 LYM 14 3 12521. 2 P 2.53 9 3.29E01 5.8
LYM67 11782. 6 E 8.62 5 4.97E02 6.4 LYM53 11844. 2 P 2.85 1 3.42E01 18.8
LYM99 12244. 2 E 8.62 5 4.97E02 6.4 LYM 17 2 12301. 2 P 2.68 8 3.44E01 12.1
LYM66 11954. 4 E 8.93 8 5.42E02 10.2 LYM67 11783. 5 P 2.69 8 3.48E01 12.5
LYM99 12243. 1 E 9.25 7.13E02 14.1 LYM51 11893. 4 P 2.94 2 3.50E01 22.6
LYM30 11913. 4 E 8.43 8 7.36E02 4 LYM 13 2 12271. 4 P 2.56 9 3.58E01 7.1
LYM66 11953. 6 E 8.43 8 7.36E02 4 LYM29 0 12502. 2 P 2.69 4 3.87E01 12.3
LYM95 12124. 4 E 8.43 8 7.36E02 4 LYM 11 9 12461. 1 P 3.08 3 3.95E01 28.5
LYM 12 8 12641. 3 E 8.81 3 7.63E02 8.7 LYM68 11942. 2 P 2.67 3 3.96E01 11.4
LYM 10 3 12713. 5 E 8.5 1.05E01 4.8 LYM 15 2 12376. 1 P 2.63 2 4.09E01 9.7
LYM26 11824. 6 E 8.5 1.05E01 4.8 LYM 13 8 12562. 1 P 2.59 4.09E01 8
LYM24 12061. 4 E 9 1.06E01 11 LYM29 0 12501. 3 P 2.57 1 4.21E01 7.2
LYM23 8 12764. 8 E 8.68 8 1.12E01 7.1 LYM51 11891. 1 P 2.50 1 4.32E01 4.2
LYM 14 5 12951. 9 E 8.37 5 1.13E01 3.3 LYM 11 1 12254. 3 P 2.96 4 4.42E01 23.6
LYM88 12194. 2 E 8.56 3 1.73E01 5.6 LYM 14 3 12524. 7 P 2.92 8 4.42E01 22
LYM26 11824. 1 E 8.75 1.74E01 7.9 LYM95 12124. 4 P 2.48 5 4.88E01 3.6
LYM20 11711. 2 E 8.93 8 1.81E01 10.2 LYM 14 8 12173. 1 P 2.55 1 4.89E01 6.3
LYM 14 12051. 4 E 8.81 3 2.22E01 8.7 LYM 15 2 12372. 1 P 2.81 6 5.25E01 17.4
LYM 11 6 13202. 12 E 8.37 5 2.33E01 3.3 LYM 10 0 12133. 3 P 2.50 1 5.25E01 4.3
LYM99 12241. 1 E 8.37 5 2.33E01 3.3 LYM26 11824. 6 P 2.61 9 5.33E01 9.2
LYM30 11912. 6 E 8.31 3 2.38E01 2.5 LYM 11 1 12251. 1 P 2.46 3 5.41E01 2.7
LYM23 9 13042. 9 E 8.43 8 2.80E01 4 LYM51 11894. 2 P 2.46 2 5.54E01 2.6
LYM69 11852. 2 E 8.93 8 2.86E01 10.2 LYM 14 12051. 4 P 2.53 4 5.68E01 5.6
LYM 12 8 12641. 1 E 8.5 3.24E01 4.8 LYM 10 5 12297. 1 P 2.47 5 5.86E01 3.1
LYM57 12012. 2 E 8.5 3.24E01 4.8 LYM 13 2 12276. 1 P 2.53 2 5.96E01 5.5
LYM31 11921. 3 E 8.55 4 3.53E01 5.5 LYM43 11792. 2 P 2.56 4 6.02E01 6.9
349
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM66 11955. 2 E 8.93 8 3.68E01 10.2 LYM30 11913. 3 P 2.45 6 6.49E01 2.4
LYM88 12193. 1 E 8.62 5 3.80E01 6.4 LYM 16 2 12231. 3 P 2.49 6 6.50E01 4.1
LYM66 11952. 2 E 8.37 5 4.66E01 3.3 LYM30 11913. 4 P 2.47 2 6.77E01 3
LYM23 2 13024. 7 E 8.31 3 4.68E01 2.5 LYM 11 9 12461. 4 P 2.51 5 7.10E- 01 4.9
LYM99 12244. 1 E 8.43 8 4.71E01 4 LYM 15 2 12371. 2 P 2.50 8 7.20E01 4.5
LYM31 11924. 4 E 8.56 3 4.80E01 5.6 LYM53 11842. 4 P 2.58 9 7.25E01 7.9
LYM51 11891. 1 E 8.25 5.02E01 1.7 LYM43 11793. 2 P 2.53 5 7.25E01 5.7
LYM53 11842. 4 E 8.25 5.02E01 1.7 LYM30 11912. 7 P 2.44 2 7.59E01 1.8
LYM62 12023. 5 E 8.25 5.02E01 1.7 LYM 15 2 12373. 1 P 2.50 3 7.68E01 4.3
LYM62 12023. 2 E 8.68 8 5.52E01 7.1 LYM26 11824. 5 P 2.42 8 7.79E01 1.2
LYM 12 11873. 4 E 8.43 8 5.87E01 4 LYM 13 2 12275. 1 P 2.42 4 8.07E01 1.1
LYM 12 11871. 3 E 8.18 8 6.37E01 1 LYM69 11852. 4 P 2.43 9 8.44E01 1.7
LYM53 11843. 2 E 8.18 8 6.37E01 1 LYM31 11922. 3 P 2.42 5 8.59E01 1.1
LYM67 11782. 4 E 8.43 8 6.63E01 4 LYM25 4 12474. 4 P 2.48 7 8.63E01 3.7
LYM43 11793. 2 E 8.43 8 7.17E01 4 LYM26 8 12482. 1 P 2.47 1 8.81E- 01 3
LYM26 11821. 2 E 8.31 3 7.24E01 2.5 LYM66 11954. 4 P 2.47 8 8.96E01 3.3
LYM 12 11871. 1 E 8.5 7.33E01 4.8 LYM 15 3 12321. 2 P 2.42 3 9.16E01 1
LYM23 9 13044. 8 E 8.18 8 7.69E01 1 LYM29 0 12502. 1 P 2.41 1 9.36E01 0.5
LYM28 5 12734. 9 E 8.31 3 7.80E01 2.5 LYM62 12022. 2 P 2.41 2 9.44E01 0.5
LYM43 11791. 5 E 8.12 5 9.18E01 0.2 LYM67 11782. 4 P 2.40 6 9.49E01 0.3
LYM 11 6 13204. 4 E 8.18 8 9.28E01 1 LYM 16 2 12234. 3 P 2.4 9.95E01 0
LYM30 11913. 5 E 8.18 8 9.28E01 1 CONTR OL P 2.39 9 0
LYM23 2 13024. 6 E 8.12 5 9.39E01 0.2
LYM30 11912. 7 E 8.18 8 9.39E01 1
LYM67 11782. 5 E 8.12 5 9.62E01 0.2
LYM26 11824. 5 E 8.12 5 9.89E01 0.2
350
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
CONTR OL E 8.10 9 0
Table 32. Results of the greenhouse experiments. Provided are the measured values of each tested parameter [parameters (ID.) A-P according to the parameters described in Table 31 above] in plants expressing the indicated polynucleotides. “Ev” = event; “P” = P-value; “Mean ” = the average of measured parameter across replicates. % incr. vs. cont. = percentage of increase versus control (as compared to control).
EXAMPLE 11
IMPROVED TRANSGENIC PLANT PERFORMANCE - TISSUE CULTURE ASSAYS
To analyze the effect of expression of the isolated polynucleotides in plants, plants performance was tested in tissue culture.
Plant growth under favorable conditions in tissue culture using T1 or T2 plants - The experiments used either T2 seeds (T2 experiments herein below) or T1 seeds (T1 experiments herein below). Surface sterilized T1 or T2 seeds were sown in basal media [50% Murashige-Skoog medium (MS) supplemented with 0.8% plant agar as solidifying agent] in the presence of Kanamycin (for selecting only transgenic plants). After sowing, plates were transferred for 2-3 days for stratification at 4 °C and then grown at 25 °C under 12-hour light 12-hour dark daily cycles for 7 to 10 days. At this time point, at T2 experiments seedlings randomly chosen were carefully transferred to plates containing 0.5 MS media. Each plate contained 5 seedlings of the same transgenic event, and 3-4 different plates (replicates) for each event. For each polynucleotide of the invention at least four independent transformation events were analyzed from each construct. Plants expressing the polynucleotides of the invention were compared to the average measurement of the control plants (empty vector or GUS reporter gene under the same promoter) used in the same experiment. Alternatively, at T1 experiments seedlings randomly chosen were carefully transferred to plates containing 0.5 MS media. Each plate contained 5 T1 seedlings representing 5 independent transgenic events, and 3-4 different plates (total of 15-20 events). Plants expressing the polynucleotides of the invention were compared to the average
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351 measurement of the control plants (empty vector or GUS reporter gene under the same promoter) used in the same experiment.
Plant growth under low nitrogen conditions in Tissue culture using T2 plants - Surface sterilized seeds were sown in basal media [50 % Murashige-Skoog medium (MS) supplemented with 0.8 % plant agar as solidifying agent] in the presence of Kanamycin (used as a selecting agent). After sowing, plates were transferred for 2-3 days for stratification at 4 °C and then grown at 25 °C under 12-hour light 12-hour dark daily cycles for 7 to 10 days. At this time point, seedlings randomly chosen were carefully transferred to plates containing % MS media (15 mM N) for the normal nitrogen concentration treatment and 0.75 mM nitrogen for the low nitrogen concentration treatments. Each plate contained 5 seedlings of the same transgenic event, and 3-4 different plates (replicates) for each event. For each polynucleotide of the invention at least four independent transformation events were analyzed from each construct. Plants expressing the polynucleotides of the invention were compared to the average measurement of the control plants (empty vector or GUS reporter gene under the same promoter) used in the same experiment.
For both experiments the same plant parameters were being measured and being described below:
Digital imaging - A laboratory image acquisition system, which consists of a digital reflex camera (Canon EOS 300D) attached with a 55 mm focal length lens (Canon EF-S series), mounted on a reproduction device (Kaiser RS), which included 4 light units (4x150 Watts light bulb) and located in a darkroom, is used for capturing images of plantlets sawn in agar plates.
The image capturing process is repeated every 4 days starting at day 1 till day 10. An image analysis system was used, which consists of a personal desktop computer (Intel P4 3.0 GHz processor) and a public domain program - ImageJ 1.39 [Java based image processing program which was developed at the U.S. National Institutes of Health and freely available on the internet at Hypertext Transfer Protocol://rsbweb (dot) nih (dot) gov/]. Images were captured in resolution of 10 Mega Pixels (3888 x 2592 pixels) and stored in a low compression JPEG (Joint Photographic Experts Group standard) format. Next, analyzed data was saved to text files and processed using the JMP statistical analysis software (SAS institute).
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Seedling analysis - Using the digital analysis seedling data was calculated, including leaf area, root coverage and root length.
The relative growth rate for the various seedling parameters was calculated according to the following formulas XVII, VII and XVIII.
Formula XVII:
Relative growth rate of leaf area = Regression coefficient of leaf area along time course.
Formula VII (above) Relative growth rate of root coverage = Regression coefficient of root coverage along time course.
Formula XVIII:
Relative growth rate of root length = Regression coefficient of root length along time course.
At the end of the experiment, plantlets were removed from the media and weighed for the determination of plant fresh weight. Plantlets were then dried for 24 hours at 60 °C, and weighed again to measure plant dry weight for later statistical analysis. Growth rate is determined by comparing the leaf area coverage, root coverage and root length, between each couple of sequential photographs, and results were used to resolve the effect of the gene introduced on plant vigor under optimal conditions. Similarly, the effect of the gene introduced on biomass accumulation, under optimal conditions, is determined by comparing the plants' fresh and dry weight to that of control plants (containing an empty vector or the GUS reporter gene under the same promoter). From every construct created, 3-5 independent transformation events were examined in replicates.
Statistical analyses - To identify genes conferring significantly improved plant vigor or enlarged root architecture, the results obtained from the transgenic plants were compared to those obtained from control plants. To identify outperforming genes and constructs, results from the independent transformation events tested were analyzed separately (T2 experiments) or as average of events (T1 experiments). To evaluate the effect of a gene event (T2 experiments) or gene (T1 experiment) over a control the data is analyzed by Student’s t-test and the p value is calculated. Results were considered significant if p < 0.1. The JMP statistics software package was used (Version 5.2.1, SAS Institute Inc., Cary, NC, USA).
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Tables 33, 35 and 37 specify the parameters measured in plants in the tissue culture assays (T2 plants, T1 plants and low nitrogen T2 plants).
Experimental Results
Plants expressing the polynucleotides of the invention were assayed for a 5 number of commercially desired traits. In cases where a certain event appears more than once, the event was tested in several independent experiments.
Table 33
Measured parameters at the tissue culture assay (T2 experiment) for transformed agriculture improving trait genes
Tested Parameters ID
Dry Weight (gr) A
Fresh Weight (gr) B
RGR Of Root Coverage C
Roots Coverage TP3 (cm2) D
RGR Of Roots Length E
Roots Length TP3 (cm) F
Leaf Area TP3 (cm) G
RGR Of Leaf Area H
Table 33: Provided are the identification (ID) letters o each of the Tested
Parameters. TP3 -Time Point 3; RGR- Relative Growth Rate.
Table 34
Results obtained in a T2 experiment at the tissue culture assay
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11801. 2 A 0.00 7 4.96E04 60.3 LYMl 1160 2.6 H 0.10 4 0.00E +00 124
LYM34 11902. 2 A 0.00 6 2.28E02 33.5 LYM132 1227 5.3 H 0.08 5 0.00E +00 82.4
LYM34 11904. 3 A 0.00 6 7.24E02 27.6 LYM178 1216 4.3 H 0.10 6 0.00E +00 128.4
LYM34 11901. 1 A 0.00 5 8.11E02 15.8 LYM132 1227 1.4 H 0.07 5 1.00E- 06 61.2
LYM35 11813. 5 A 0.00 5 8.90E02 14.7 LYMl 1160 1.1 H 0.07 4 2.00E06 60.1
CONTR OL A 0.00 5 0 LYM178 1216 3.3 H 0.09 3 2.00E06 100.8
LYM34 11904. 3 B 0.11 9 8.41E02 27.7 LYM132 1227 6.1 H 0.08 6 6.00E06 84.4
LYM35 11813. 5 B 0.10 9 9.32E02 16.8 LYM134 1231 4.2 H 0.07 5 3.10E- 05 61.1
CONTR OL B 0.09 3 0 LYM6 1173 6.1 H 0.07 7 5.10E- 05 66
354
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Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11801. 1 C 0.69 7 1.40E- 05 69.9 LYM268 1248 2.1 H 0.07 2 6.60E05 54.4
LYM 12 11874. 1 c 0.59 3.88E02 43.9 LYM 129 1257 3.5 H 0.07 8 1.22E04 68.6
LYM35 11813. 5 c 0.51 8 7.38E02 26.2 LYM1 1160 3.2 H 0.06 6 5.10E04 42.6
LYM37 11803. 2 c 0.52 7 8.20E02 28.3 LYM268 1248 3.2 H 0.07 2 5.20E04 54.1
LYM34 11902. 2 c 0.50 5 9.84E02 23.1 LYM134 1231 3.2 H 0.09 8 8.99E04 111.5
CONTR OL c 0.41 0 LYM178 1216 4.2 H 0.06 4 I.35E03 37.5
LYM37 11801. 1 D 6.17 8 1.90E- 05 69.5 LYM5 1243 2.1 H 0.07 2 1.67E03 54.4
LYM41 11831. 5 D 4.33 1 7.99E02 18.8 LYM268 1248 3.4 H 0.07 3.94E03 50.7
CONTR OL D 3.64 5 0 LYM268 1248 2.3 H 0.06 4 5.44E03 36.9
LYM37 11801. 1 E 0.5 9.40E05 48.1 LYM5 1243 5.1 H 0.06 7 9.04E03 44.9
LYM34 11902. 4 E 0.43 4 4.61E03 28.8 LYM6 1173 5.1 H 0.06 4 1.69E02 37.6
LYM 12 11871. 1 E 0.42 1 1.67E02 24.7 LYM6 1173 5.2 H 0.05 9 1.93E02 27.1
LYM 12 11874. 1 E 0.47 5 2.60E02 40.6 LYM 129 1257 2.2 H 0.05 9 2.39E02 26.6
LYM 12 11873. 4 E 0.43 7 2.78E02 29.5 LYM 129 1257 1.3 H 0.06 1 5.64E02 31
LYM 12 11872. 1 E 0.41 9 3.43E02 24.3 LYM132 1227 3.2 H 0.06 1 6.13E02 32.2
LYM37 11803. 2 E 0.44 4.37E02 30.4 LYM1 1160 2.1 H 0.05 7 6.26E02 21.7
LYM134 12312. 3 E 0.41 3 4.44E02 22.3 LYM5 1243 6.2 H 0.05 9 8.93E02 27.3
LYM178 12164. 2 E 0.45 5 4.69E02 34.8 CONTR OL H 0.04 6 0
LYM34 11903. 3 E 0.41 8 4.86E02 24 LYM236 1259 4.3 A 0.00 8 1.51E03 116.1
LYM41 11831. 1 E 0.41 5.41E- 02 21.5 LYM254 1247 1.1 A 0.00 8 2.78E03 98.7
LYM178 12161. 1 E 0.40 3 7.68E02 19.6 LYM 162 1223 1.1 A 0.00 6 3.13E03 46.6
LYM41 11833. 1 E 0.41 5 8.54E02 23.1 LYM42 1199 2.2 A 0.00 6 4.31E03 47.3
CONTR OL E 0.33 7 0 LYM148 1217 1.2 A 0.00 6 5.66E03 53.1
LYM37 11801. 1 F 6.04 7 6.62E04 37 LYM 170 1245 2.3 A 0.00 8 1.06E02 100.6
LYM34 11902. 4 F 5.24 6 9.78E04 18.8 LYM250 1261 3.2 A 0.00 8 1.81E02 93.6
LYM41 11831. 5 F 5.45 2.57E03 23.5 LYM 172 1230 1.3 A 0.00 5 2.24E02 40.8
LYM41 11831. F 5.58 4.3 IE- 26.5 LYM206 1260 A 0.00 2.33E- 69.1
355
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Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 3 03 3.2 7 02
LYM 12 11873. 4 F 5.77 6 1.16E02 30.8 LYM236 1259 2.3 A 0.01 1 2.33E02 194.5
LYM37 11801. 2 F 5.41 1 1.89E02 22.6 LYM 140 1226 1.4 A 0.00 5 2.36E02 37.6
LYM178 12161. 1 F 5.19 7 2.62E02 17.7 LYM236 1259 1.1 A 0.00 8 4.87E02 94.9
LYM35 11813. 5 F 5.42 1 3.01E02 22.8 LYM 172 1230 4.1 A 0.00 6 5.05E02 46
LYM 12 11871. 1 F 4.91 3.40E02 11.2 LYM 170 1245 3.3 A 0.00 8 5.28E02 102.6
LYM34 11903. 3 F 5.27 1 5.80E02 19.4 LYM99 1224 4.2 A 0.00 5 5.35E02 31.8
LYM 12 11872. 1 F 4.93 3 9.08E02 11.8 LYM 176 1238 5.1 A 0.00 8 6.09E02 92.9
LYM37 11803. 2 F 5.32 5 9.97E02 20.6 LYM254 1247 3.1 A 0.00 6 6.78E02 51.1
CONTR OL F 4.41 4 0 LYM206 1260 1.3 A 0.00 5 8.81E02 23.5
LYM34 11902. 2 G 0.51 1.12E04 35.6 CONTR OL A 0.00 4 0
LYM132 12271. 4 G 0.53 5 1.40E04 42.2 LYM250 1261 3.2 B 0.15 5 1.17E03 115.8
LYM37 11801. 1 G 0.53 3.38E03 41.1 LYM 170 1245 2.3 B 0.15 1.88E03 108.2
LYM35 11813. 5 G 0.53 2 4.76E03 41.6 LYM 140 1226 1.4 B 0.10 3 2.97E03 42.9
LYM41 11831. 5 G 0.48 5 5.92E03 29.1 LYM254 1247 1.1 B 0.14 6 4.61E03 103.2
LYM34 11904. 3 G 0.51 1 1.03E02 36 LYM42 1199 2.2 B 0.11 2 6.00E03 55
LYM37 11801. 2 G 0.55 3 2.50E02 47.2 LYM236 1259 4.3 B 0.16 6 7.83E03 130.6
LYM35 11814. 1 G 0.49 6 4.22E02 31.9 LYM148 1217 1.2 B 0.11 8 9.52E03 63.8
LYM37 11803. 2 G 0.46 4.24E02 22.3 LYM99 1224 4.2 B 0.09 4 1.23E02 31
LYM35 11812. 4 G 0.49 5 4.88E02 31.7 LYM89 1221 1.2 B 0.15 7 1.54E02 117.7
LYM37 11802. 2 G 0.69 8 5.08E02 85.6 LYM 162 1223 1.1 B 0.10 9 1.59E02 52
LYM178 12161. 1 G 0.43 2 5.38E02 15 LYM236 1259 2.3 B 0.21 8 1.74E02 202.4
LYM41 11831. 1 G 0.46 7 8.64E02 24.4 LYM 172 1230 4.1 B 0.11 8 2.52E02 63.6
LYM178 12163. 3 G 0.43 9 8.80E02 16.7 LYM 176 1238 5.1 B 0.14 7 2.76E02 103.9
LYM37 11803. 1 G 0.44 5 9.23E02 18.3 LYM254 1247 3.1 B 0.12 3 3.29E02 70.5
CONTR OL G 0.37 6 0 LYM206 1260 3.2 B 0.13 9 3.64E02 92.4
LYM37 11802. 2 H 0.07 1 8.35E04 82.3 LYM236 1259 1.1 B 0.14 8 3.71E02 105.8
356
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Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM37 11801. 1 H 0.05 6 2.75E03 44.2 LYM 170 1245 3.3 B 0.15 6 4.30E02 116.8
LYM37 11801. 2 H 0.05 4 6.30E03 40.3 LYM250 1261 4.1 B 0.09 4.32E02 24.8
LYM35 11813. 5 H 0.05 1 1.52E02 32.4 LYM 172 1230 2.2 B 0.08 9 4.68E02 23.7
LYM132 12271. 4 H 0.05 2 1.70E02 34.1 LYM250 1261 3.4 B 0.09 9 4.78E02 37
LYM37 11803. 2 H 0.05 2.33E02 29.6 LYM206 1260 1.3 B 0.1 5.38E02 39.3
LYM35 11812. 4 H 0.05 2 2.59E02 33.2 LYM 140 1226 1.2 B 0.08 9 5.71E02 23.4
LYM34 11902. 2 H 0.04 9 2.97E02 27.4 LYM206 1260 3.1 B 0.08 8 6.78E02 22.5
LYM34 11904. 3 H 0.05 7.81E02 28.4 LYM 170 1245 3.2 B 0.09 4 7.55E02 30.7
LYM 12 11874. 1 H 0.05 9.07E02 30.1 LYM206 1260 2.1 B 0.12 3 8.33E02 70.1
LYM35 11814. 1 H 0.04 7 9.82E02 22.5 LYM 170 1245 2.4 B 0.12 8 8.37E02 77.1
CONTR OL H 0.03 9 0 LYM 140 1226 2.2 B 0.09 9.03E02 24.7
LYM82 12203. 5 A 0.01 1 1.26E03 111.5 LYM 176 1238 4.1 B 0.09 6 9.40E02 33
LYM268 12482. 1 A 0.00 7 2.56E03 34.2 CONTR OL B 0.07 2 0
LYM82 12201. 2 A 0.00 8 5.53E03 51.6 LYM 172 1230 1.3 C 0.90 9 0.00E +00 131.8
LYM5 12436. 1 A 0.00 6 8.15E03 24.2 LYM 176 1238 4.1 C 0.86 9 0.00E +00 121.6
LYM86 12183. 1 A 0.00 7 8.76E03 43.6 LYM206 1260 3.2 C 0.96 2 0.00E +00 145.4
LYM 129 12573. 1 A 0.01 1.15E02 91.5 LYM236 1259 1.1 C 1.00 8 0.00E +00 157.2
LYM268 12484. 2 A 0.00 9 2.45E02 73.6 LYM236 1259 2.3 C 0.99 9 0.00E +00 154.8
LYM268 12483. 4 A 0.01 4 2.66E02 180.3 LYM236 1259 4.3 C 0.86 2 0.00E +00 119.8
LYM 129 12572. 2 A 0.00 7 2.78E02 38.7 LYM250 1261 3.2 C 0.93 7 0.00E +00 139
LYM8 11984. 1 A 0.01 1 3.56E02 125.9 LYM254 1247 1.1 C 0.83 2 0.00E +00 112.2
LYM86 12183. 3 A 0.00 7 9.36E02 39.7 LYM 170 1245 2.4 C 0.78 4 1.00E06 100.1
CONTR OL A 0.00 5 0 LYM 170 1245 2.3 C 0.82 6 1.00E05 110.8
LYM268 12482. 1 B 0.13 8 1.55E03 47.8 LYM 170 1245 3.2 C 0.78 9 1.00E05 101.4
LYM82 12203. 5 B 0.18 9 5.29E03 102.1 LYM148 1217 1.2 C 0.80 9 1.10E05 106.5
LYM86 12183. 1 B 0.14 2 1.04E02 51.8 LYM206 1260 2.1 C 0.89 5 1.10E05 128.4
LYM 129 12573. B 0.17 1.16E- 83.7 LYM 172 1230 C 0.71 1.30E- 81
357
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Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 1 02 4.1 05
LYM268 12484. 2 B 0.14 6 1.19E02 56.8 LYM162 1223 1.1 C 0.89 8 1.70E05 129
LYM82 12201. 2 B 0.13 3 1.75E02 42.9 LYM162 1223 1.2 c 0.85 6 2.40E05 118.5
LYM268 12483. 4 B 0.24 3 2.03E02 160.1 LYM176 1238 1.3 c 0.69 1 4.30E05 76.2
LYM129 12572. 2 B 0.12 6 4.67E02 35.3 LYM250 1261 4.1 c 0.74 8.00E05 88.8
LYM5 12436. 1 B 0.11 7.62E02 18.2 LYM206 1260 3.3 c 0.73 6 1.02E04 87.7
CONTR OL B 0.09 3 0 LYM89 1221 4.2 c 0.71 3 1.44E04 81.9
LYM268 12483. 4 C 1.19 3 0.00E +00 184.9 LYM176 1238 5.1 c 0.84 7 1.46E04 116
LYM82 12203. 5 C 0.93 3 1.00E06 122.9 LYM172 1230 2.2 c 0.77 7 1.54E04 98.2
LYM8 11984. 1 C 0.84 6 1.20E05 102.1 LYM254 1247 1.2 c 0.65 7 2.37E04 67.6
LYM82 12203. 2 C 1.04 7 2.30E05 149.9 LYM99 1224 4.2 c 0.66 5 5.09E04 69.6
LYM268 12484. 2 C 0.74 9 4.40E05 79 LYM250 1261 1.3 c 0.66 6 5.70E04 69.8
LYM5 12436. 2 C 0.70 8 1.17E04 69 LYM172 1230 1.2 c 0.62 1 6.43E04 58.4
LYM44 11884. 3 C 0.68 3 5.09E04 63.2 LYM170 1245 3.3 c 0.70 9 6.67E04 80.9
LYM86 12183. 3 C 0.59 9 4.64E03 43.1 LYM89 1221 4.1 c 0.69 4 7.89E04 77.2
LYM129 12573. 1 C 0.63 4 4.95E03 51.5 LYM236 1259 2.4 c 0.69 8 8.40E04 78
LYM129 12572. 2 C 0.61 6 5.99E03 47.2 LYM42 1199 2.2 c 0.75 8.94E04 91.4
LYM86 12182. 3 C 0.58 5 1.21E02 39.6 LYM140 1226 1.2 c 0.63 4 1.55E03 61.8
LYM268 12481. 3 C 0.65 5 1.25E02 56.5 LYM89 1221 4.3 c 0.63 6 1.76E03 62.3
LYM5 12436. 1 C 0.59 2 1.26E02 41.3 LYM89 1221 1.2 c 0.69 1.81E03 76
LYM44 11882. 1 C 0.61 2 1.33E02 46.2 LYM162 1223 3.2 c 0.59 4 2.55E03 51.5
LYM268 12482. 1 C 0.55 8 3.20E02 33.2 LYM99 1224 4.1 c 0.63 1 3.I2E03 60.9
LYM44 11885. 3 C 0.54 6 5.94E02 30.3 LYM140 1226 1.4 c 0.61 4 3.48E03 56.5
CONTR OL C 0.41 9 0 LYM254 1247 2.3 c 0.60 9 4.02E03 55.4
LYM268 12483. 4 D 10.3 19 2.40E05 190.3 LYM162 1223 4.3 c 0.59 1 4.28E03 50.8
LYM5 12436. 2 D 6.06 9 1.53E03 70.7 LYM3 1204 1.2 c 0.58 4 5.59E03 48.9
LYM44 11884. 3 D 5.87 6 2.29E03 65.3 LYM99 1224 1.1 c 0.57 3 6.37E03 46.2
358
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Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM82 12203. 5 D 8.17 2.69E03 129.8 LYM89 1221 4.4 C 0.60 1 ΊΑΊΕ03 53.3
LYM268 12484. 2 D 6.62 7 3.76E03 86.4 LYM250 1261 3.4 c 0.59 8 7.72E03 52.6
LYM86 12183. 3 D 5.31 3 3.87E03 49.5 LYM290 1250 2.1 c 0.63 5 8.21E03 61.9
LYM86 12182. 3 D 4.99 6 8.33E03 40.6 LYM290 1250 1.3 c 0.63 6 1.00E02 62.3
LYM129 12572. 2 D 5.33 6 1.25E02 50.1 LYM148 1217 3.5 c 0.60 8 1.17E02 55.2
LYM129 12573. 1 D 5.39 1.80E02 51.6 LYM148 1217 3.1 c 0.55 5 1.44E02 41.6
LYM5 12436. 1 D 5.20 3 2.16E02 46.4 LYM206 1260 1.3 c 0.60 6 1.63E02 54.7
LYM82 12203. 2 D 9.17 2 2.69E02 158 LYM148 1217 2.1 c 0.54 4 3.03E02 38.8
LYM8 11984. 1 D 7.27 7 3.07E02 104.7 LYM254 1247 4.3 c 0.54 3 3.66E02 38.4
LYM44 11885. 3 D 4.76 8 3.08E02 34.1 LYM3 1204 1.1 c 0.53 1 3.68E02 35.5
LYM268 12482. 1 D 4.71 4 3.75E02 32.6 LYM99 1224 3.2 c 0.58 4 4.06E02 48.9
LYM44 11882. 1 D 5.20 5 6.64E02 46.4 CONTR OL c 0.39 2 0
CONTR OL D 3.55 5 0 LYM176 1238 4.1 D 7.65 5 0.00E +00 132.7
LYM268 12483. 4 E 0.52 9 1.08E02 41.8 LYM172 1230 4.1 D 6.29 8 1.30E05 91.4
LYM44 11884. 3 E 0.50 4 2.21E02 35.2 LYM170 1245 2.4 D 6.86 3 3.10E05 108.6
LYM82 12203. 2 E 0.52 8 2.55E02 41.7 LYM176 1238 1.3 D 6.03 9 3.20E05 83.6
LYM82 12203. 5 E 0.49 4 6.19E02 32.5 LYM254 1247 1.2 D 5.66 3 1.13E04 72.2
LYM86 12182. 3 E 0.47 4 7.22E02 27.2 LYM172 1230 1.3 D 7.85 3 3.12E04 138.7
LYM86 12183. 3 E 0.46 9 9.75E02 25.7 LYM172 1230 1.2 D 5.34 7 3.95E04 62.5
CONTR OL E 0.37 3 0 LYM254 1247 1.1 D 7.28 5.95E04 121.3
LYM268 12483. 4 F 6.55 1 4.20E05 48.7 LYM99 1224 1.1 D 4.88 5 1.02E03 48.5
LYM82 12203. 5 F 6.54 4.30E05 48.4 LYM162 1223 3.2 D 5.09 5 1.13E03 54.9
LYM82 12203. 2 F 6.36 6 2.44E04 44.5 LYM236 1259 1.1 D 8.65 5 1.52E03 163.1
LYM44 11884. 3 F 5.87 5 6.63E04 33.4 LYM236 1259 4.3 D 7.79 6 2.20E03 137
LYM86 12182. 3 F 5.58 6 2.72E03 26.8 LYM162 1223 4.3 D 5.02 3 2.44E03 52.7
LYM86 12183. 3 F 5.72 4 3.20E03 29.9 LYM206 1260 3.2 D 8.33 2.58E03 153.2
LYM8 11983. F 5.55 3.24E- 26.1 LYM148 1217 D 4.69 2.92E- 42.6
359
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 6 03 3.1 2 03
LYM5 12436. 1 F 5.83 1 3.79E03 32.3 LYM236 1259 2.3 D 8.56 4 2.99E03 160.3
LYM268 12484. 2 F 5.89 8 5.85E03 33.9 LYM3 1204 1.2 D 5.08 3 3.81E03 54.5
LYM86 12181. 2 F 5.39 6 7.40E03 22.5 LYM140 1226 1.4 D 5.32 1 3.93E03 61.7
LYM129 12572. 2 F 5.55 5 8.48E03 26.1 LYM250 1261 3.2 D 8.02 2 4.46E03 143.9
LYM5 12432. 2 F 5.25 2 2.59E02 19.2 LYM148 1217 1.2 D 7.07 6 4.80E03 115.1
LYM44 11882. 1 F 5.40 9 3.28E02 22.8 LYM170 1245 3.2 D 6.92 5.21E03 110.4
LYM5 12432. 1 F 5.11 6 3.85E02 16.1 LYM89 1221 4.3 D 5.75 6.25E03 74.8
LYM44 11885. 4 F 5.08 5 4.84E02 15.4 LYM206 1260 3.3 D 6.59 9 8.50E03 100.6
LYM129 12573. 1 F 5.08 2 5.14E02 15.3 LYM89 1221 4.2 D 6.28 5 1.03E02 91
LYM5 12436. 2 F 5.77 2 5.31E02 31 LYM99 1224 4.2 D 5.74 2 1.05E02 74.5
LYM5 12435. 1 F 5.49 8 6.21E02 24.8 LYM250 1261 4.1 D 6.30 8 1.09E02 91.8
LYM8 11982. 6 F 5.08 9 7.04E02 15.5 LYM170 1245 2.3 D 7.21 1.17E02 119.2
LYM8 11984. 1 F 5.99 9 9.59E02 36.2 LYM140 1226 1.2 D 5.41 1.38E02 64.5
CONTR OL F 4.40 6 0 LYM254 1247 2.3 D 5.26 8 1.47E02 60.1
LYM5 12436. 1 G 0.63 8 1.29E04 50.3 LYM250 1261 1.3 D 5.79 6 1.51E02 76.2
LYM129 12573. 1 G 0.84 9 1.56E04 99.9 LYM89 1221 4.1 D 6.21 1.65E02 88.8
LYM82 12203. 5 G 0.84 7 2.51E04 99.4 LYM172 1230 2.2 D 6.67 2 1.89E02 102.8
LYM86 12183. 3 G 0.68 7 4.03E04 61.7 LYM206 1260 2.1 D 7.77 2 1.91E02 136.2
LYM268 12482. 1 G 0.60 3 5.49E04 42 LYM162 1223 1.1 D 7.88 5 1.92E02 139.7
LYM268 12483. 4 G 1.05 4 6.89E04 148 LYM3 1204 1.1 D 4.68 4 2.07E02 42.4
LYM82 12201. 2 G 0.64 3 1.52E03 51.4 LYM162 1223 1.2 D 7.35 9 2.76E02 123.7
LYM268 12484. 2 G 0.76 8 1.52E03 80.8 LYM236 1259 2.4 D 6.22 4 2.84E02 89.2
LYM86 12183. 1 G 0.60 2 2.17E03 41.6 LYM99 1224 4.1 D 5.46 7 2.84E02 66.2
LYM44 11882. 1 G 0.54 4 4.43E03 28.1 LYM176 1238 5.1 D 7.50 3 2.87E02 128.1
LYM44 11885. 3 G 0.55 2 4.98E03 29.9 LYM290 1250 1.2 D 4.36 7 2.94E02 32.8
LYM82 12204. 6 G 0.55 8 7.03E03 31.3 LYM148 1217 2.1 D 4.71 1 3.20E02 43.2
360
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM129 12572. 2 G 0.67 1 7.23E03 57.9 LYM170 1245 3.3 D 6.28 2 3.38E02 91
LYM44 11884. 3 G 0.53 2 7.42E03 25.3 LYM250 1261 3.4 D 5.34 5 3.40E02 62.5
LYM5 12436. 2 G 0.54 5 8.39E03 28.2 LYM89 1221 1.2 D 6.24 7 4.75E02 89.9
LYM8 11984. 1 G 0.84 9 1.84E02 99.8 LYM89 1221 4.4 D 4.93 2 4.87E02 49.9
LYM86 12182. 3 G 0.52 6 2.43E02 23.7 LYM42 1199 2.2 D 6.54 5.04E02 98.8
LYM6 11735. 2 G 0.49 8.02E02 15.4 LYM148 1217 3.5 D 5.37 2 6.79E02 63.3
LYM82 12203. 2 G 0.83 4 8.07E02 96.2 LYM254 1247 4.3 D 4.62 5 6.91E02 40.6
CONTR OL G 0.42 5 0 LYM290 1250 2.1 D 5.37 7.87E02 63.2
LYM129 12573. 1 H 0.08 5 0.00E +00 100.9 LYM206 1260 1.3 D 5.29 6 8.29E02 61
LYM268 12483. 4 H 0.10 8 0.00E +00 156.5 CONTR OL D 3.29 0
LYM8 11984. 1 H 0.08 9 0.00E +00 110.3 LYM236 1259 1.1 E 0.59 4 2.26E03 47.4
LYM82 12203. 5 H 0.08 8 1.00E06 108.4 LYM172 1230 2.2 E 0.59 6 3.04E03 47.9
LYM268 12484. 2 H 0.07 4 2.30E05 75.8 LYM176 1238 1.3 E 0.57 7 4.24E03 43.2
LYM86 12183. 3 H 0.06 6 2.60E04 56.3 LYM140 1226 1.2 E 0.56 6 4.95E03 40.6
LYM268 12482. 1 H 0.06 2 1.28E03 46.3 LYM99 1224 4.1 E 0.56 6 6.16E03 40.6
LYM129 12572. 2 H 0.06 5 1.65E03 53.7 LYM172 1230 4.1 E 0.56 4 7.50E03 40.1
LYM82 12203. 2 H 0.08 7 1.78E03 106.5 LYM170 1245 3.2 E 0.56 3 7.87E03 39.8
LYM5 12436. 1 H 0.06 2.89E03 41.7 LYM170 1245 2.4 E 0.56 7 8.02E03 40.8
LYM86 12183. 1 H 0.06 5.56E03 41 LYM254 1247 2.3 E 0.55 3 8.60E03 37.2
LYM5 12436. 2 H 0.05 9 8.00E03 39 LYM148 1217 1.2 E 0.56 3 9.63E03 39.9
LYM82 12201. 2 H 0.05 9 8.96E03 40.3 LYM206 1260 2.1 E 0.56 2 1.25E02 39.6
LYM82 12204. 6 H 0.05 7 1.25E02 34.6 LYM99 1224 4.2 E 0.54 1.39E02 34
LYM44 11884. 3 H 0.05 6 1.64E02 32.6 LYM236 1259 2.3 E 0.55 5 2.06E02 37.7
LYM268 12481. 3 H 0.06 1 2.53E02 44.7 LYM250 1261 3.2 E 0.54 2 2.10E02 34.5
LYM44 11885. 3 H 0.05 6 2.57E02 33.6 LYM254 1247 1.2 E 0.55 2.13E02 36.6
LYM44 11882. 1 H 0.05 5 3.23E02 29.4 LYM206 1260 3.2 E 0.55 7 2.43E02 38.4
LYM5 12432. H 0.05 5.25E- 34.7 LYM170 1245 E 0.53 2.59E- 33.7
361
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 7 02 2.3 8 02
LYM86 12182. 3 H 0.05 3 7.08E02 24.8 LYM89 1221 4.4 E 0.55 7 2.64E02 38.2
CONTR OL H 0.04 2 0 LYM236 1259 2.4 E 0.53 4 2.66E02 32.6
LYM89 12214. 3 A 0.00 6 5.91E04 43.4 LYM206 1260 3.3 E 0.54 2 2.79E02 34.5
LYM250 12611. 3 A 0.00 6 4.67E03 44.1 LYM172 1230 1.3 E 0.52 7 3.29E02 30.7
CONTR OL A 0.00 4 0 LYM172 1230 1.2 E 0.52 3 3.72E02 29.8
LYM250 12611. 3 C 0.72 4 1.68E02 39.6 LYM148 1217 3.1 E 0.54 7 3.85E02 35.7
CONTR OL C 0.51 9 0 LYM89 1221 4.1 E 0.55 4 3.89E02 37.6
LYM250 12611. 3 D 6.63 3 3.09E02 40.5 LYM89 1221 1.2 E 0.52 9 3.96E02 31.3
CONTR OL D 4.72 1 0 LYM250 1261 4.1 E 0.53 5 4.14E02 32.8
LYM250 12611. 3 E 0.53 1 7.01E02 18.9 LYM162 1223 1.1 E 0.54 4.51E02 34.1
CONTR OL E 0.44 7 0 LYM42 1199 2.2 E 0.52 8 5.37E02 31.2
LYM250 12611. 3 F 6.62 7 1.48E03 22.7 LYM206 1260 1.3 E 0.51 6.40E02 26.6
LYM236 12591. 1 F 6.19 7 1.53E02 14.7 LYM250 1261 1.3 E 0.52 5 6.99E02 30.4
LYM99 12243. 2 F 6.22 2.59E02 15.1 LYM206 1260 4.3 E 0.50 3 7.47E02 24.9
CONTR OL F 5.40 2 0 LYM236 1259 4.3 E 0.51 8.71E02 26.7
LYM250 12611. 3 G 0.63 3 4.48E03 30.7 LYM176 1238 5.1 E 0.52 6 8.97E02 30.6
LYM89 12214. 3 G 0.63 2 3.84E02 30.6 LYM254 1247 1.1 E 0.51 3 9.45E02 27.4
CONTR OL G 0.48 4 0 LYM176 1238 4.1 E 0.50 7 9.46E02 26
LYM250 12611. 3 H 0.06 6 4.26E02 29.7 CONTR OL E 0.40 3 0
CONTR OL H 0.05 1 0 LYM170 1245 3.2 F 7.24 6 1.00E06 71.9
LYM130 12332. 2 A 0.00 8 7.52E04 183.7 LYM170 1245 2.4 F 7.20 7 1.00E06 71
LYM102 12222. 1 A 0.00 6 1.71E03 86.6 LYM236 1259 1.1 F 7.23 9 1.00E06 71.7
LYM130 12334. 1 A 0.00 7 2.90E03 123.4 LYM148 1217 1.2 F 6.95 1 3.00E06 64.9
LYM138 12561. 3 A 0.00 5 3.10E03 74.1 LYM172 1230 1.3 F 7.00 6 3.00E06 66.2
LYM141 12404. 2 A 0.00 6 8.08E03 106.7 LYM99 1224 4.2 F 6.7 3.00E06 59
LYM106 12142. 2 A 0.00 4 1.83E02 48.1 LYM176 1238 1.3 F 7.08 9 4.00E06 68.2
362
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM138 12566. 1 A 0.00 4 1.99E02 46.4 LYM176 1238 4.1 F 7.17 1 3.30E05 70.1
LYM100 12133. 3 A 0.00 5 2.31E02 62.3 LYM99 1224 4.1 F 6.71 5 3.40E05 59.3
LYM141 12404. 3 A 0.00 8 3.47E02 151 LYM254 1247 2.3 F 6.57 3 3.80E05 56
LYM106 12144. 3 A 0.00 5 3.82E02 59 LYM172 1230 4.1 F 6.85 2 4.90E05 62.6
LYM119 12462. 1 A 0.00 4 6.49E02 46.4 LYM140 1226 1.2 F 6.62 3 5.40E05 57.1
LYM130 12331. 3 A 0.00 4 7.03E02 48.1 LYM170 1245 2.3 F 6.77 7 6.70E05 60.8
LYM137 12152. 1 A 0.00 8 7.19E02 160.3 LYM3 1204 1.1 F 6.22 8 7.30E05 47.8
LYM100 12131. 2 A 0.00 4 7.74E02 45.6 LYM148 1217 3.5 F 6.63 9 7.60E05 57.5
LYM102 12221. 2 A 0.00 7 8.15E02 117.6 LYM206 1260 3.2 F 7.10 5 1.19E- 04 68.6
LYM130 12332. 1 A 0.00 4 9.91E02 48.1 LYM254 1247 1.1 F 6.78 1 1.27E- 04 60.9
CONTR OL A 0.00 3 0 LYM89 1221 4.2 F 7.10 8 1.46E- 04 68.6
LYM141 12404. 2 B 0.13 4 1.20E- 05 79 LYM206 1260 3.1 F 5.79 3 2.05E04 37.4
LYM138 12561. 3 B 0.11 4 2.78E04 52.9 LYM250 1261 3.2 F 6.78 2 2.08E04 60.9
LYM102 12222. 1 B 0.11 3 9.40E04 51.4 LYM140 1226 1.4 F 6.07 9 2.18E04 44.2
LYM130 12332. 1 B 0.11 7 7.14E- 03 55.7 LYM172 1230 1.2 F 6.31 7 2.83E04 49.9
LYM130 12332. 2 B 0.18 9 1.06E02 152.1 LYM290 1250 1.2 F 5.64 8 3.03E04 34
LYM106 12142. 2 B 0.10 4 1.16E- 02 38.3 LYM290 1250 1.3 F 6.47 2 3.12E- 04 53.6
LYM130 12334. 1 B 0.17 6 1.48E02 135 LYM236 1259 4.3 F 7.03 3 3.99E04 66.9
LYM141 12404. 3 B 0.15 5 3.07E02 106.5 LYM89 1221 1.2 F 6.81 3 4.03E04 61.6
LYM138 12566. 1 B 0.1 3.93E02 33.3 LYM162 1223 1.1 F 7.20 3 5.06E04 70.9
LYM137 12152. 1 B 0.16 4 4.75E02 119.7 LYM148 1217 2.1 F 5.78 9 5.46E04 37.3
LYM100 12131. 2 B 0.10 8 5.45E02 44.1 LYM99 1224 1.1 F 5.77 6.25E04 36.9
LYM119 12462. 1 B 0.11 6.36E02 46.8 LYM206 1260 2.1 F 6.96 6.53E04 65.1
LYM113 12444. 5 B 0.14 4 6.90E02 91.8 LYM236 1259 2.4 F 6.74 1 7.46E04 59.9
CONTR OL B 0.07 5 0 LYM236 1259 2.3 F 6.47 1 8.01E- 04 53.5
LYM137 12153. 1 C 0.75 3.30E05 73.3 LYM162 1223 1.2 F 6.80 5 8.61E- 04 61.4
LYM102 12222. C 0.68 3.41E- 57.4 LYM250 1261 F 6.19 1.05E- 47
363
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 1 04 3.4 6 03
LYM141 12404. 3 C 0.73 9 1.80E03 70.8 LYM 176 1238 5.1 F 6.84 2 1.76E03 62.3
LYM137 12152. 1 c 0.63 2.56E03 45.6 LYM 172 1230 2.2 F 6.85 1 1.79E03 62.5
LYM138 12561. 3 c 0.61 5 2.31E02 42.1 LYM250 1261 4.1 F 6.73 3 1.94E03 59.7
LYM130 12332. 2 c 0.58 8 2.32E02 36 LYM206 1260 3.3 F 6.66 6 1.97E03 58.2
LYM 102 12221. 2 c 0.57 8 5.38E02 33.7 LYM42 1199 2.2 F 6.76 5 2.50E03 60.5
LYM 100 12133. 3 c 0.55 5 5.62E02 28.4 LYM89 1221 4.1 F 6.51 9 2.76E03 54.7
LYM141 12404. 2 c 0.54 7 7.44E02 26.5 LYM254 1247 1.2 F 6.58 9 2.87E03 56.3
CONTR OL c 0.43 3 0 LYM 162 1223 4.3 F 5.85 8 3.38E03 39
LYM 102 12222. 1 D 5.94 2 1.65E03 46.8 LYM3 1204 1.2 F 5.20 3 3.62E03 23.4
LYM137 12152. 1 D 5.64 8 2.45E03 39.5 LYM250 1261 1.3 F 6.66 4 3.93E03 58.1
LYM137 12153. 1 D 6.55 1 2.59E03 61.8 LYM206 1260 1.3 F 5.60 5 5.24E03 33
LYM 100 12133. 3 D 5.09 9 5.27E02 26 LYM89 1221 4.3 F 5.83 7 6.12E03 38.5
LYM130 12332. 2 D 5.25 3 6.20E02 29.8 LYM 162 1223 3.2 F 5.95 8 8.02E03 41.4
CONTR OL D 4.04 8 0 LYM254 1247 4.3 F 5.75 8 8.41E03 36.6
LYM137 12153. 1 E 0.56 9 1.28E03 41.7 LYM3 1204 3.2 F 4.99 3 1.23E02 18.5
LYM141 12404. 3 E 0.55 9 1.44E02 39.3 LYM42 1199 2.1 F 5.51 4 1.45E02 30.8
LYM138 12561. 3 E 0.51 3.15E02 27 LYM290 1250 2.1 F 5.90 9 2.95E02 40.2
LYM 102 12222. 1 E 0.50 1 4.11E02 24.8 LYM148 1217 3.1 F 6.08 6 3.14E02 44.4
LYM 100 12133. 3 E 0.49 3 5.35E02 22.9 LYM206 1260 4.3 F 4.95 9 4.80E02 17.7
CONTR OL E 0.40 1 0 LYM148 1217 4.1 F 4.97 1 6.23E02 17.9
LYM138 12561. 3 F 6.64 9 2.18E03 31.5 LYM99 1224 3.2 F 5.67 5 6.51E02 34.6
LYM 100 12133. 3 F 6.46 9 2.22E03 27.9 LYM 140 1226 2.3 F 5.43 7 8.77E02 29
LYM138 12562. 1 F 5.95 7 5.93E03 17.8 LYM42 1199 4.1 F 5.06 8 9.11E02 20.2
LYM 102 12222. 1 F 6.27 6.30E03 24 CONTR OL F 4.21 5 0
LYM137 12153. 1 F 6.74 3 9.51E03 33.3 LYM254 1247 1.1 G 0.77 3 3.00E06 72.9
LYM113 12444. 5 F 5.95 7 1.07E02 17.8 LYM99 1224 4.2 G 0.56 9 1.23E03 27.3
364
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM102 12221. 2 F 5.89 2 1.12E02 16.5 LYM206 1260 1.3 G 0.63 1.78E03 40.9
LYM137 12152. 1 F 5.94 9 1.63E02 17.6 LYM170 1245 2.3 G 1.02 4 2.21E03 129
LYM119 12461. 4 F 5.79 3 2.27E02 14.5 LYM176 1238 4.1 G 0.67 5 2.30E03 51
LYM130 12332. 2 F 5.63 8 4.49E02 11.5 LYM250 1261 3.2 G 0.88 6 2.49E03 98.2
LYM113 12443. 1 F 5.68 1 8.19E02 12.3 LYM42 1199 2.2 G 0.68 8 4.52E03 53.8
CONTR OL F 5.05 8 0 LYM172 1230 1.2 G 0.55 5 4.63E03 24.2
LYM102 12222. 1 G 0.64 1 5.60E03 61.2 LYM236 1259 4.3 G 0.92 3 4.63E03 106.6
LYM138 12561. 3 G 0.56 3 7.37E03 41.4 LYM162 1223 1.1 G 0.70 4 5.43E03 57.5
LYM130 12332. 2 G 0.73 3 8.67E03 84.3 LYM148 1217 1.2 G 0.74 4 6.77E03 66.5
LYM137 12152. 1 G 0.75 2 1.54E02 88.9 LYM236 1259 2.3 G 1.06 3 6.78E03 137.7
LYM141 12404. 2 G 0.53 8 2.41E02 35.3 LYM172 1230 4.1 G 0.62 3 7.31E03 39.4
LYM138 12566. 1 G 0.5 2.70E02 25.7 LYM206 1260 3.2 G 0.74 9 9.52E03 67.5
LYM130 12334. 1 G 0.54 4 4.27E02 36.6 LYM176 1238 5.1 G 0.99 7 1.09E02 123.1
LYM143 12521. 2 G 0.47 8 7.49E02 20.2 LYM250 1261 4.2 G 0.57 2 1.38E02 27.9
LYM138 12562. 1 G 0.47 6 9.14E02 19.7 LYM89 1221 4.2 G 0.54 7 1.62E02 22.4
CONTR OL G 0.39 8 0 LYM250 1261 3.4 G 0.68 1 1.94E02 52.3
LYM141 12404. 3 H 0.07 7 5.80E05 96.5 LYM170 1245 2.4 G 0.76 2.00E02 70
LYM102 12222. 1 H 0.06 5 8.00E05 65.8 LYM89 1221 1.2 G 0.71 4 2.05E02 59.8
LYM137 12152. 1 H 0.07 3 8.50E05 85.8 LYM140 1226 1.4 G 0.70 1 2.10E02 56.9
LYM130 12332. 2 H 0.06 8 9.70E05 73.7 LYM170 1245 3.2 G 0.64 2 2.18E02 43.5
LYM137 12153. 1 H 0.06 6 1.26E- 03 66.9 LYM140 1226 2.2 G 0.56 9 2.43E02 27.3
LYM138 12561. 3 H 0.05 4 1.01E02 37.1 LYM170 1245 3.3 G 0.90 9 2.78E02 103.3
LYM141 12404. 2 H 0.05 3 1.35E02 34.4 LYM236 1259 1.1 G 0.87 4 2.83E02 95.5
LYM102 12221. 2 H 0.05 8 1.40E02 46.1 LYM89 1221 4.4 G 0.53 7 2.84E02 20.2
LYM130 12334. 1 H 0.05 2 3.72E02 30.7 LYM99 1224 3.1 G 0.62 3 3.48E02 39.3
LYM138 12562. 1 H 0.05 4.54E02 26 LYM89 1221 4.3 G 0.63 6 4.21E02 42.2
LYM138 12566. H 0.04 7.16E- 22.8 LYM176 1238 G 0.59 4.33E- 32.1
365
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 8 02 4.2 1 02
LYMl 00 12133. 3 H 0.04 9 7.66E02 25.2 LYM206 1260 3.3 G 0.58 5 4.64E02 31
LYMl 06 12144. 3 H 0.04 9 8.55E02 24 LYMl 40 1226 1.2 G 0.51 5.15E- 02 14
CONTR OL H 0.03 9 0 LYMl 76 1238 2.2 G 0.58 5 5.38E02 30.8
LYM153 12321. 2 A 0.01 2 9.21E03 102.4 LYM42 1199 2.1 G 0.64 1 5.45E02 43.4
LYMl 52 12376. 1 A 0.01 1 4.22E02 75.2 LYM148 1217 3.5 G 0.67 3 5.74E02 50.6
LYM148 12174. 1 A 0.00 8 5.19E- 02 28.7 LYM89 1221 4.1 G 0.63 1 5.75E02 41.2
LYMl 40 12262. 2 A 0.00 8 9.10E02 23.8 LYM206 1260 2.1 G 0.73 2 5.75E02 63.6
CONTR OL A 0.00 6 0 LYM254 1247 3.1 G 0.56 8 5.82E02 27
LYM153 12321. 2 B 0.24 5 2.61E03 69.9 LYM3 1204 1.2 G 0.66 5 6.39E02 48.8
LYMl 52 12376. 1 B 0.20 3 8.19E02 40.9 LYM42 1199 3.1 G 0.52 8 6.87E02 18.2
CONTR OL B 0.14 4 0 LYMl 72 1230 1.3 G 0.54 9 8.21E02 22.8
LYMl 52 12376. 1 C 1.18 4 0.00E +00 138.6 LYMl 76 1238 1.3 G 0.56 3 8.39E02 26
LYM153 12321. 2 C 1.04 1 1.30E- 05 109.9 LYM290 1250 4.1 G 0.65 9 8.59E02 47.4
LYMl 70 12452. 3 C 0.84 2.70E05 69.4 CONTR OL G 0.44 7 0
LYMl 49 12344. 2 C 0.82 9 5.50E05 67.1 LYMl 70 1245 2.3 H 0.09 9 0.00E +00 113.2
LYMl 72 12301. 2 C 0.90 5 6.80E05 82.3 LYM236 1259 2.3 H 0.10 9 0.00E +00 135.8
LYMl 74 12412. 1 C 0.80 9 9.50E05 63.2 LYM250 1261 3.2 H 0.08 8 0.00E +00 90.5
LYM153 12322. 1 C 0.87 7 1.92E- 04 76.8 LYM236 1259 4.3 H 0.08 8 1.00E- 06 89
LYMl 72 12301. 3 C 0.86 2.07E04 73.3 LYM254 1247 1.1 H 0.07 7 1.00E- 06 64.9
LYMl 76 12381. 3 C 0.78 1 3.32E04 57.5 LYMl 76 1238 5.1 H 0.09 6 6.00E06 106.2
LYMl 70 12454. 2 C 0.76 6 5.34E04 54.4 LYM206 1260 3.2 H 0.07 8 1.20E- 05 68.2
LYMl 74 12411. 3 C 0.74 8 1.82E- 03 50.8 LYMl 70 1245 3.3 H 0.09 2 7.00E05 97.6
LYMl 62 12234. 4 C 0.74 3 2.64E03 49.7 LYMl 70 1245 2.4 H 0.07 8 8.10E- 05 67.9
LYM289 12493. 2 C 0.74 7 3.09E03 50.6 LYM236 1259 1.1 H 0.08 7 1.34E- 04 87.2
LYMl 74 12411. 2 C 0.78 5 4.17E03 58.3 LYMl 62 1223 1.1 H 0.07 1 2.54E04 52.4
LYMl 11 12254. 3 C 0.76 4 4.75E03 54 LYM89 1221 1.2 H 0.07 1 5.66E04 52
366
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM148 12174. 1 C 0.72 5 5.96E03 46.1 LYM42 1199 2.2 H 0.06 6 5.77E04 43
LYM162 12234. 3 c 0.73 3 1.17E02 47.7 LYM206 1260 1.3 H 0.06 5 6.02E04 39.1
LYM148 12171. 2 c 0.68 4 2.29E02 37.8 LYM148 1217 1.2 H 0.06 9 9.52E04 49.3
LYM105 12293. 1 c 0.65 8 2.67E02 32.6 LYM176 1238 4.1 H 0.06 6 1.86E03 42.7
LYM162 12231. 2 c 0.68 2.78E02 37.1 LYM206 1260 2.1 H 0.07 3 2.16E03 58.3
LYM174 12414. 3 c 0.65 5.52E02 30.9 LYM172 1230 4.1 H 0.06 3 2.61E03 36.2
LYM170 12452. 4 c 0.63 6 5.67E02 28.2 LYM250 1261 3.4 H 0.06 6 2.68E03 43
LYM153 12323. 2 c 0.68 4 5.84E02 37.9 LYM170 1245 3.2 H 0.06 4 3.33E03 38.6
LYM148 12173. 5 c 0.65 2 6.99E02 31.4 LYM140 1226 1.4 H 0.06 6 4.14E03 41.3
LYM290 12502. 4 c 0.63 5 7.97E02 28.1 LYM99 1224 3.1 H 0.06 3 6.82E03 35.1
LYM254 12474. 4 c 0.61 7 8.58E02 24.4 LYM99 1224 4.2 H 0.05 9 7.05E03 27.3
LYM148 12173. 1 c 0.63 2 9.21E02 27.3 LYM89 1221 4.1 H 0.06 5 7.10E03 40.5
CONTR OL c 0.49 6 0 LYM206 1260 3.3 H 0.06 1 8.74E03 31.6
LYM152 12376. 1 D 10.1 84 0.00E +00 134.7 LYM250 1261 4.2 H 0.06 9.60E03 29.4
LYM170 12452. 3 D 7.08 7.80E05 63.2 LYM42 1199 2.1 H 0.06 4 1.49E02 37.4
LYM176 12381. 3 D 6.67 2.52E04 53.7 LYM254 1247 3.1 H 0.06 1.84E02 28.6
LYM149 12344. 2 D 7.18 2 2.74E04 65.5 LYM290 1250 4.1 H 0.06 5 2.04E02 39.9
LYM174 12412. 1 D 6.75 1 3.53E04 55.6 LYM89 1221 4.3 H 0.06 1 3.34E02 30.8
LYM170 12454. 2 D 6.62 6 3.98E04 52.7 LYM172 1230 1.2 H 0.05 7 3.68E02 22.3
LYM174 12411. 3 D 6.49 7 3.90E03 49.7 LYM42 1199 3.1 H 0.05 8 3.99E02 24.2
LYM289 12493. 2 D 6.46 9 8.75E03 49.1 LYM89 1221 4.4 H 0.05 7 4.67E02 22.5
LYM162 12234. 4 D 6.25 3 1.01E02 44.1 LYM148 1217 3.5 H 0.06 2 4.81E02 33.2
LYM105 12293. 1 D 5.67 1.26E02 30.7 LYM140 1226 1.2 H 0.05 6 5.27E02 19.9
LYM172 12301. 3 D 7.41 2 1.63E02 70.8 LYM236 1259 2.4 H 0.06 1 6.49E02 30.4
LYM172 12301. 2 D 7.67 4 1.83E02 76.9 LYM250 1261 4.1 H 0.05 5 9.32E02 19.6
LYM153 12321. 2 D 8.90 1 1.85E02 105.2 LYM176 1238 1.3 H 0.05 6 9.61E02 20.1
LYM153 12322. D 7.58 2.24E- 74.7 LYM290 1250 H 0.06 9.74E- 35.7
367
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 02 1.3 3 02
LYM148 12174. 1 D 6.39 2.38E02 47.3 CONTR OL H 0.04 6 0
LYM254 12474. 4 D 5.37 7 2.95E02 23.9 LYM90 1239 2.1 A 0.00 5 1.00E06 108.9
LYM111 12254. 3 D 6.64 2 3.13E02 53.1 LYM213 1284 2.9 A 0.00 4 5.60E05 48.5
LYM 170 12452. 4 D 5.43 8 5.31E02 25.3 LYM 107 1263 3.4 A 0.00 6 1.12E04 153.5
LYM148 12171. 2 D 6.00 8 5.50E02 38.5 LYM157 1334 1.1 A 0.00 6 1.62E03 130.7
LYM 174 12411. 2 D 6.70 3 6.07E02 54.5 LYM90 1239 4.2 A 0.00 5 2.24E03 78.2
LYM 162 12231. 2 D 5.94 8 7.11E02 37.1 LYM 107 1263 1.4 A 0.00 5 9.45E03 104
LYM 162 12234. 3 D 6.31 9 8.38E02 45.6 LYM 180 1344 1.7 A 0.00 4 1.15E02 58.4
LYM 172 12304. 1 D 5.12 6 9.20E02 18.2 LYM90 1239 5.3 A 0.00 5 1.27E02 115.8
CONTR OL D 4.33 9 0 LYM248 1350 1.6 A 0.00 4 1.40E02 74.3
LYM 176 12381. 3 E 0.57 2.35E02 42.8 LYM52 1289 5.7 A 0.00 5 1.64E02 87.1
LYM 172 12301. 2 E 0.56 3 3.24E02 41.1 LYM52 1289 4.6 A 0.00 5 2.41E02 93.1
LYM 174 12412. 1 E 0.56 3.53E02 40.3 LYM213 1284 1.8 A 0.00 7 2.71E02 161.4
LYM153 12322. 1 E 0.54 7 5.02E02 37.1 LYM68 1194 2.2 A 0.00 4 3.03E02 77.2
LYM254 12474. 4 E 0.54 5 5.08E02 36.5 LYM157 1334 1.3 A 0.00 7 3.06E02 193.1
LYM111 12254. 3 E 0.54 2 6.45E02 35.8 LYM 180 1344 1.5 A 0.00 3 3.17E02 20.8
LYM 170 12454. 2 E 0.53 7 6.57E02 34.5 LYM52 1289 1.8 A 0.00 7 3.60E02 183.2
LYM 172 12301. 3 E 0.54 3 6.79E02 36.1 LYM68 1194 3.5 A 0.00 4 3.69E02 46.5
LYM148 12174. 1 E 0.53 5 6.85E02 34 LYM213 1284 1.6 A 0.00 8 3.70E02 235.6
LYM 152 12376. 1 E 0.54 3 7.05E02 36.1 LYM117 1362 2.6 A 0.00 5 4.17E02 85.1
LYM 174 12411. 2 E 0.53 5 7.56E02 34.1 LYM117 1362 1.8 A 0.00 4 4.82E02 57.4
LYM153 12321. 2 E 0.54 3 7.70E02 36.1 LYM52 1289 4.8 A 0.00 8 5.80E02 217.8
LYM 170 12452. 3 E 0.53 8.57E02 32.8 LYM68 1194 1.3 A 0.00 4 5.93E02 41.6
LYM148 12171. 2 E 0.52 3 9.20E02 31.1 LYM248 1350 2.7 A 0.00 4 6.41E02 65.3
CONTR OL E 0.39 9 0 LYM117 1362 4.4 A 0.00 4 7.16E02 72.3
LYM 149 12344. 2 F 6.80 1 1.57E03 33.2 LYM52 1289 4.7 A 0.00 6 7.32E02 152.5
368
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 152 12376. 1 F 7.02 3 1.62E03 37.5 LYM157 1334 1.4 A 0.00 5 7.51E02 106.9
LYM148 12171. 2 F 6.66 3 2.42E03 30.5 LYM213 1284 1.7 A 0.00 5 8.38E02 114.9
LYM254 12474. 4 F 6.67 1 2.45E03 30.7 LYM 180 1344 3.7 A 0.00 3 8.44E02 28.7
LYM 174 12412. 1 F 6.79 1 2.67E03 33 LYM 180 1344 2.6 A 0.00 4 9.89E02 50.5
LYM 170 12454. 2 F 6.64 1 2.92E03 30.1 CONTR OL A 0.00 3 0
LYM 170 12452. 3 F 6.74 2 3.91E03 32 LYM90 1239 2.1 B 0.15 2 1.06E03 81.1
LYM 172 12301. 3 F 6.70 6 5.41E03 31.3 LYM 107 1263 1.4 B 0.13 6 2.69E03 61.9
LYM148 12174. 1 F 6.44 9 5.65E03 26.3 LYM90 1239 5.3 B 0.13 5 5.72E03 60.8
LYM153 12321. 2 F 6.67 8 5.68E03 30.8 LYM157 1334 1.1 B 0.14 6 1.69E02 73.9
LYM153 12322. 1 F 6.44 3 5.80E03 26.2 LYM213 1284 1.6 B 0.20 3 1.93E02 141.6
LYM 176 12381. 3 F 6.44 2 5.82E03 26.2 LYM117 1362 1.8 B 0.10 5 2.79E02 24.6
LYM289 12493. 2 F 6.37 7.79E03 24.8 LYM 107 1263 3.4 B 0.14 4 3.61E02 71.1
LYM 172 12301. 2 F 6.40 1 8.13E03 25.4 LYM68 1194 2.2 B 0.11 1 4.71E02 31.8
LYM 174 12414. 3 F 6.25 9 1.53E02 22.6 LYM52 1289 4.6 B 0.13 1 4.73E02 55.6
LYM 174 12411. 2 F 6.33 8 1.62E02 24.1 LYM52 1289 4.8 B 0.18 4 4.84E02 118.7
LYM148 12173. 5 F 6.26 8 1.64E02 22.7 LYM157 1334 1.3 B 0.16 5 5.02E02 96.8
LYM 140 12262. 3 F 6.2 1.65E02 21.4 LYM52 1289 4.7 B 0.16 4 5.10E02 94.7
LYM111 12254. 3 F 6.35 2 1.66E02 24.4 LYM52 1289 1.8 B 0.14 7 5.39E02 75.3
LYM 176 12384. 1 F 6.08 7 2.67E02 19.2 LYM90 1239 4.2 B 0.11 5.40E02 30.6
LYM 170 12453. 2 F 6.09 8 3.46E02 19.4 LYM52 1289 5.7 B 0.15 5.54E02 78.1
LYM111 12252. 2 F 6.02 9 3.90E02 18.1 LYM248 1350 2.7 B 0.12 6.58E02 43.3
LYM 162 12234. 4 F 5.98 4.10E02 17.1 LYM213 1284 2.9 B 0.09 9 6.68E02 17.3
LYM153 12323. 2 F 6.03 5 4.13E02 18.2 LYM117 1362 2.6 B 0.13 6 6.92E02 61.7
LYM 162 12234. 3 F 6.27 6 4.14E02 22.9 LYM213 1284 1.8 B 0.18 6 9.20E02 121.5
LYM 170 12452. 4 F 5.96 4.49E02 16.7 CONTR OL B 0.08 4 0
LYM 149 12343. 2 F 6.25 5 5.80E02 22.5 LYM 107 1263 3.4 C 0.99 1 0.00E +00 94.3
LYM 162 12231. F 6.01 6.32E- 17.9 LYM 107 1263 C 0.94 0.00E 85.1
369
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 9 02 1.4 4 +00
LYM 152 12373. 2 F 5.84 6 7.37E02 14.5 LYM52 1289 4.6 C 1.01 2 0.00E +00 98.3
LYM289 12493. 6 F 5.78 7 9.53E02 13.3 LYM52 1289 1.8 c 0.92 8 0.00E +00 81.9
CONTR OL F 5.10 6 0 LYM68 1194 2.2 c 0.98 0.00E +00 92.1
LYM 152 12376. 1 G 0.99 3 4.96E04 50.8 LYM52 1289 4.8 c 0.95 4 1.00E- 06 87
LYM153 12321. 2 G 1.04 8 4.01E03 59.2 LYM213 1284 1.6 c 0.87 3.00E06 70.5
LYM148 12174. 1 G 0.91 6 6.30E03 39.2 LYM90 1239 2.1 c 0.86 9 1.10E- 05 70.4
LYM290 12502. 4 G 0.79 9 4.73E02 21.3 LYM157 1334 1.3 c 0.93 6 3.10E- 05 83.5
LYM 172 12301. 2 G 0.86 2 5.63E02 30.9 LYM157 1334 1.1 c 0.82 3 1.04E- 04 61.3
LYM 140 12262. 2 G 0.81 4 8.61E02 23.6 LYM90 1239 5.3 c 0.82 1.17E- 04 60.6
LYM 174 12411. 3 G 0.86 7 9.28E02 31.7 LYM157 1334 1.4 c 0.81 2 1.51E- 04 59.2
CONTR OL G 0.65 8 0 LYM90 1239 4.2 c 0.77 9 2.54E04 52.8
LYM 152 12376. 1 H 0.10 3 1.39E- 04 65.4 LYM68 1194 1.4 c 0.78 8 3.36E04 54.5
LYM153 12321. 2 H 0.10 6 2.48E04 69.7 LYM248 1350 1.6 c 0.78 4 5.63E04 53.7
LYM 172 12301. 2 H 0.08 8 1.64E02 41 LYM 107 1263 1.1 c 0.76 4 6.45E04 49.7
LYM148 12174. 1 H 0.08 6 1.81E02 38.1 LYM117 1362 2.6 c 0.74 I.38E03 45.1
LYM 174 12411. 3 H 0.08 5 4.51E02 36.4 LYM52 1289 5.7 c 0.72 4 2.87E03 42
CONTR OL H 0.06 3 0 LYM52 1289 4.7 c 0.74 1 3.BEOS 45.2
LYM 175 12651. 2 A 0.00 5 1.27E- 03 85.3 LYM90 1239 3.1 c 0.72 8 8.19E03 42.6
LYM 107 12632. 1 A 0.00 5 7.98E03 96.3 LYM157 1334 2.4 c 0.71 1.13E02 39.2
LYM203 12663. 2 A 0.00 6 1.07E02 104.6 LYM 107 1263 1.2 c 0.67 1 2.27E02 31.6
LYM128 12642. 1 A 0.00 4 3.17E- 02 53.2 LYM213 1284 1.7 c 0.68 2.56E02 33.4
LYM128 12641. 3 A 0.00 4 5.95E02 64.2 LYM68 1194 2.3 c 0.67 9 3.65E02 33
LYM 175 12654. 4 A 0.00 4 7.53E02 47.7 LYM90 1239 5.1 c 0.67 6 5.36E02 32.6
CONTR OL A 0.00 3 0 LYM68 1194 1.3 c 0.64 4 5.48E02 26.2
LYM 107 12631. 1 B 0.09 2 9.39E03 28.3 LYM248 1350 3.5 c 0.64 7 6.20E02 26.8
LYM 175 12654. 4 B 0.11 2 1.18E02 55.8 LYM117 1362 1.8 c 0.64 7 6.25E02 26.8
370
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM203 12663. 2 B 0.12 2 1.66E02 69.5 LYM117 1362 4.7 C 0.63 6 7.06E02 24.6
LYM 107 12632. 1 B 0.12 5 2.43E02 73.7 LYM117 1362 3.9 c 0.62 9 9.82E02 23.2
LYM 175 12651. 2 B 0.11 7 2.91E02 62.4 CONTR OL c 0.51 0
LYM128 12642. 1 B 0.09 6 3.18E- 02 33.2 LYM213 1284 1.6 D 7.63 8 4.50E05 69.8
LYM128 12641. 3 B 0.09 6 6.27E02 33.4 LYM117 1362 2.6 D 6.21 9 9.60E05 38.3
LYM203 12662. 2 B 0.15 7.88E02 108.2 LYM 107 1263 1.2 D 5.85 2 3.86E04 30.1
CONTR OL B 0.07 2 0 LYM68 1194 2.2 D 8.37 1 4.18E04 86.1
LYM128 12642. 1 C 0.59 4.98E04 67 LYM52 1289 1.8 D 8.04 8 4.29E04 78.9
LYM203 12663. 2 C 0.49 6 2.37E02 40.5 LYM90 1239 4.2 D 6.75 1 1.42E- 03 50.1
LYM203 12662. 2 C 0.52 9 5.42E02 49.7 LYM 107 1263 1.1 D 6.53 1 2.91E03 45.2
LYM128 12641. 3 C 0.44 7 7.46E02 26.7 LYM52 1289 5.7 D 6.18 3 5.76E03 37.5
LYM 107 12631. 2 C 0.48 2 8.17E- 02 36.6 LYM52 1289 4.6 D 8.57 2 6.41E- 03 90.6
CONTR OL C 0.35 3 0 LYM 107 1263 1.4 D 8.24 9 7.31E03 83.4
LYM128 12642. 1 D 5.09 8 4.34E03 62 LYM90 1239 2.1 D 7.58 6 1.12E02 68.6
LYM128 12641. 3 D 4.17 6 1.25E02 32.7 LYM52 1289 4.8 D 8.22 8 1.31E02 82.9
LYM203 12663. 2 D 4.26 6 7.47E02 35.6 LYM 107 1263 3.4 D 8.64 4 1.42E02 92.2
CONTR OL D 3.14 6 0 LYM90 1239 5.3 D 7.12 1.67E- 02 58.3
LYM128 12641. 3 E 0.44 7 9.19E04 33 LYM157 1334 1.4 D 7.11 4 1.98E02 58.2
LYM128 12641. 5 E 0.43 3 3.42E03 28.7 LYM68 1194 1.4 D 6.66 3 2.04E02 48.1
LYM128 12642. 1 E 0.44 4.86E03 30.8 LYM117 1362 4.7 D 5.48 2 2.19E02 21.9
LYM203 12663. 2 E 0.41 3 2.97E02 22.8 LYM68 1194 1.3 D 5.57 8 2.27E02 24
LYM203 12662. 2 E 0.40 4 3.66E02 20.3 LYM157 1334 1.1 D 7.02 6 2.67E02 56.2
LYM128 12641. 1 E 0.41 4 8.08E02 23.3 LYM248 1350 1.6 D 6.80 9 3.00E02 51.4
CONTR OL E 0.33 6 0 LYM117 1362 1.8 D 5.70 3 4.86E02 26.8
LYM128 12642. 1 F 6.01 2 8.60E05 45.8 LYM52 1289 4.7 D 6.31 4 5.92E02 40.4
LYM128 12641. 3 F 5.47 9 1.32E- 04 32.9 LYM157 1334 1.3 D 8.09 2 7.45E02 79.9
LYM203 12663. F 5.07 7.26E- 23 LYM213 1284 D 6.06 8.34E- 34.8
371
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 03 1.7 2 02
LYM203 12664. 1 F 4.69 9 7.69E03 14 LYM 180 1344 3.7 D 5.25 9 8.41E02 16.9
LYM203 12662. 2 F 5.04 1 1.20E02 22.3 LYM157 1334 2.4 D 6.14 3 8.49E02 36.6
LYM128 12641. 5 F 4.68 6 1.21E02 13.7 CONTR OL D 4.49 8 0
LYM 175 12651. 4 F 4.80 2 1.96E02 16.5 LYM68 1194 1.4 E 0.61 6 1.55E03 41.7
LYM 107 12632. 3 F 4.57 3 3.01E02 10.9 LYM 107 1263 1.1 E 0.59 8 3.20E03 37.5
LYM 107 12631. 2 F 5.32 5 7.35E02 29.1 LYM68 1194 2.2 E 0.59 3 4.66E03 36.4
LYM128 12641. 1 F 5.15 1 7.83E02 24.9 LYM52 1289 4.6 E 0.59 6 4.93E03 37.2
CONTR OL F 4.12 3 0 LYM248 1350 3.5 E 0.58 8 5.03E03 35.2
LYM 107 12632. 1 G 0.52 5 1.77E03 47.2 LYM90 1239 3.1 E 0.58 7 5.49E03 34.9
LYM128 12642. 1 G 0.56 8 2.05E03 59.3 LYM52 1289 5.7 E 0.58 6 5.79E03 34.7
LYM128 12641. 3 G 0.51 9 4.67E03 45.3 LYM68 1194 1.3 E 0.58 6 6.68E03 34.7
LYM203 12663. 2 G 0.58 3 1.40E02 63.4 LYM52 1289 4.8 E 0.57 9 9.24E03 33.1
LYM 107 12631. 1 G 0.44 7 4.06E02 25.4 LYM90 1239 4.2 E 0.56 9 1.49E02 30.9
LYM 175 12651. 2 G 0.56 8 5.89E02 59.1 LYM157 1334 1.3 E 0.55 4 2.88E02 27.3
LYM203 12662. 2 G 0.60 9 5.96E02 70.7 LYM213 1284 1.6 E 0.55 3 2.96E02 27.1
CONTR OL G 0.35 7 0 LYM248 1350 1.6 E 0.55 8 3.17E02 28.3
LYM128 12642. 1 H 0.05 7 4.93E03 57.5 LYM 107 1263 3.4 E 0.54 6 4.23E02 25.5
LYM203 12663. 2 H 0.05 6 9.28E03 55.3 LYM157 1334 1.1 E 0.54 5 4.29E02 25.2
LYM203 12662. 2 H 0.06 1.20E02 65 LYM 180 1344 1.7 E 0.54 1 5.32E02 24.4
LYM128 12641. 3 H 0.05 1 2.49E02 40.3 LYM157 1334 1.4 E 0.54 5.93E02 24.2
LYM 175 12651. 2 H 0.05 6 2.52E02 55.8 LYM 107 1263 1.2 E 0.53 9 6.08E02 24
LYM 107 12632. 1 H 0.05 1 2.94E02 40.3 LYM90 1239 2.1 E 0.53 3 8.04E02 22.5
CONTR OL H 0.03 6 0 LYM68 1194 2.3 E 0.52 6 9.63E02 20.9
LYM224 13435. 3 A 0.00 7 0.00E +00 90.7 CONTR OL E 0.43 5 0
LYM217 13182. 1 A 0.00 9 9.40E05 160 LYM 107 1263 3.4 F 7.25 1 0.00E +00 30.4
LYM23 12783. 5 A 0.00 7 6.40E04 99 LYM68 1194 2.2 F 7.60 7 0.00E +00 36.8
372
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM164 12813. 5 A 0.01 1.20E03 169 LYM90 1239 3.1 F 7.20 6 0.00E +00 29.6
LYM164 12813. 8 A 0.00 9 2.03E03 143.6 LYM52 1289 4.8 F 6.93 2 3.00E06 24.7
LYM251 13073. 8 A 0.00 7 3.58E03 84.6 LYM157 1334 1.3 F 6.85 4 1.40E05 23.3
LYM122 13712. 3 A 0.00 5 3.83E03 45.5 LYM90 1239 4.2 F 6.94 1 1.40E05 24.9
LYM274 13414. 2 A 0.00 9 4.46E03 138.1 LYM68 1194 1.3 F 7.08 2 7.00E05 27.4
LYM217 13181. 11 A 0.00 9 4.68E03 136.7 LYM180 1344 1.5 F 6.59 6 8.70E05 18.6
LYM79 13132. 2 A 0.01 6.39E03 166.9 LYM157 1334 1.4 F 6.80 5 1.05E04 22.4
LYM273 13721. 3 A 0.01 1 7.17E03 201.2 LYM248 1350 3.5 F 7.13 1.31E04 28.3
LYM273 13721. 1 A 0.00 7 8.18E- 03 81.8 LYM52 1289 5.7 F 6.93 6 2.60E04 24.8
LYM249 13631. 1 A 0.00 6 8.20E03 64.7 LYM90 1239 5.3 F 6.74 7 7.99E04 21.4
LYM23 12783. 7 A 0.01 8.56E03 162.1 LYM107 1263 1.1 F 6.89 9.89E04 23.9
LYM122 13713. 2 A 0.00 7 8.63E03 80.4 LYM180 1344 3.7 F 6.93 4 1.01E03 24.7
LYM249 13633. 1 A 0.01 9.46E03 172.4 LYM52 1289 1.8 F 6.48 6 1.57E- 03 16.7
LYM193 13484. 3 A 0.00 8 9.51E03 127.8 LYM248 1350 1.6 F 7.25 6 2.13E03 30.5
LYM245 13061. 6 A 0.00 7 1.45E02 82.5 LYM213 1284 1.6 F 6.73 6 3.86E03 21.2
LYM273 13722. 4 A 0.00 7 1.60E02 90.1 LYM157 1334 1.1 F 6.31 2 3.94E03 13.6
LYM251 13072. 8 A 0.00 9 1.70E- 02 138.1 LYM90 1239 5.1 F 6.79 6 4.94E03 22.2
LYM217 13181. 7 A 0.00 6 1.82E02 53 LYM107 1263 1.2 F 6.84 6 6.89E03 23.2
LYM23 12782. 6 A 0.00 8 2.17E02 114.8 LYM248 1350 2.7 F 6.67 3 6.91E- 03 20
LYM122 13714. 4 A 0.01 2.25E02 166.2 LYM157 1334 2.4 F 6.44 2 7.43E03 15.9
LYM245 13062. 5 A 0.00 8 2.38E02 131.2 LYM107 1263 1.4 F 6.95 9 8.62E03 25.2
LYM79 13133. 1 A 0.00 6 3.11E- 02 62.6 LYM52 1289 4.6 F 7.32 8 1.06E02 31.8
LYM23 12784. 6 A 0.00 7 4.14E02 95.5 LYM68 1194 1.4 F 6.93 7 1.08E02 24.8
LYM251 13073. 7 A 0.00 8 4.14E02 126.4 LYM68 1194 2.3 F 6.77 1 1.09E02 21.8
LYM273 13723. 1 A 0.00 8 4.80E02 123 LYM117 1362 1.8 F 6.43 1 1.47E02 15.7
LYM224 13434. 2 A 0.00 6 4.97E02 59.9 LYM180 1344 2.6 F 6.00 3 1.85E02 8
LYM251 13074. A 0.00 5.26E- 49.6 LYM213 1284 F 6.00 1.91E- 7.9
373
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
6 5 02 2.8 1 02
LYM274 13413. 4 A 0.00 6 5.58E02 76.3 LYM 180 1344 1.7 F 6.81 4 2.38E02 22.6
LYM273 13722. 3 A 0.00 7 6.00E02 80.4 LYM90 1239 2.1 F 6.51 8 3.57E02 17.2
LYM224 13435. 1 A 0.01 6.64E02 177.9 LYM52 1289 4.7 F 6.23 2 5.88E02 12.1
LYM217 13183. 2 A 0.00 9 6.68E02 156.6 LYM213 1284 1.7 F 6.42 9 9.76E02 15.6
LYM217 13181. 6 A 0.00 6 6.76E02 62.6 CONTR OL F 5.55 9 0
LYM79 13133. 3 A 0.00 5 6.76E02 41.3 LYM68 1194 2.2 G 0.71 9 1.00E- 06 54.5
LYM23 12783. 8 A 0.00 5 7.66E02 30.4 LYM90 1239 5.3 G 0.72 4 1.00E- 06 55.5
LYM 122 13714. 2 A 0.00 8 7.70E02 114.8 LYM117 1362 3.9 G 0.58 6 5.20E05 25.8
LYM249 13631. 2 A 0.00 7 8.25E02 105.1 LYM248 1350 1.6 G 0.71 9 6.60E05 54.4
LYM274 13415. 2 A 0.00 7 8.30E02 83.2 LYM117 1362 2.6 G 0.70 9 5.32E04 52.2
LYM249 13631. 4 A 0.00 5 8.68E02 31.7 LYM 107 1263 1.4 G 0.73 3 5.34E04 57.3
LYM251 13072. 6 A 0.00 9 9.27E02 159.3 LYM 180 1344 1.7 G 0.66 4 1.17E- 03 42.6
LYM240 12682. 1 A 0.00 9 9.57E02 148.4 LYM52 1289 1.8 G 0.87 8 1.61E- 03 88.5
CONTR OL A 0.00 4 0 LYM213 1284 1.6 G 1.09 8 2.01E03 135.7
LYM251 13073. 8 B 0.14 5 7.17E04 59.3 LYM68 1194 3.5 G 0.65 3 2.34E03 40.2
LYM 164 12813. 8 B 0.16 6 8.84E04 82.4 LYM117 1362 1.8 G 0.60 8 3.36E03 30.6
LYM 122 13712. 3 B 0.12 2 8.94E04 33.4 LYM90 1239 4.2 G 0.64 4 3.68E03 38.4
LYM217 13182. 1 B 0.17 9 1.19E- 03 96.3 LYM52 1289 4.6 G 0.69 3.90E03 48.2
LYM273 13721. 3 B 0.22 1 1.26E- 03 142.7 LYM157 1334 1.1 G 0.80 4 3.92E03 72.7
LYM249 13631. 1 B 0.15 9 1.43E- 03 74.6 LYM 107 1263 3.4 G 0.82 9 5.17E- 03 78
LYM273 13721. 1 B 0.13 2 1.54E- 03 44.4 LYM52 1289 5.7 G 0.78 6 1.65E02 68.8
LYM 193 13484. 3 B 0.16 5 2.86E03 80.7 LYM52 1289 4.8 G 0.98 7 1.95E02 111.9
LYM79 13132. 2 B 0.2 3.59E03 119.3 LYM117 1362 4.7 G 0.59 2 2.59E02 27.2
LYM217 13181. 11 B 0.20 3 4.90E03 123.1 LYM213 1284 1.8 G 0.74 6 2.62E02 60.2
LYM 122 13714. 4 B 0.24 9 4.98E03 172.7 LYM 180 1344 1.5 G 0.63 2 2.70E02 35.7
LYM273 13723. 1 B 0.16 5 8.86E03 80.7 LYM117 1362 4.4 G 0.57 6 2.79E02 23.6
374
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM274 13411. 2 B 0.11 4 1.00E02 24.9 LYM248 1350 2.7 G 0.68 5 2.84E02 47.1
LYM274 13414. 2 B 0.18 9 1.01E02 107.4 LYM 107 1263 2.1 G 0.58 8 2.98E02 26.3
LYM249 13633. 1 B 0.19 5 1.09E02 114.2 LYM157 1334 1.4 G 0.88 2 3.13E02 89.4
LYM245 13062. 5 B 0.19 7 1.37E02 116.1 LYM68 1194 1.3 G 0.57 3 5.05E02 23
LYM274 13413. 4 B 0.14 1 1.41E02 54.1 LYM157 1334 1.3 G 0.83 4 5.09E02 79.2
LYM23 12783. 7 B 0.20 4 1.57E02 123.9 LYM 107 1263 1.1 G 0.68 8 5.95E02 47.8
LYM224 13435. 3 B 0.14 9 2.06E02 63.9 LYM90 1239 2.1 G 0.63 3 6.01E02 35.9
LYM79 13134. 3 B 0.14 2.13E02 53.9 LYM157 1334 1.7 G 0.71 7 8.11E02 54
LYM251 13072. 8 B 0.16 1 2.19E02 76.5 LYM52 1289 4.7 G 0.72 9.20E02 54.6
LYM23 12783. 8 B 0.13 1 2.26E02 43.9 LYM213 1284 1.7 G 0.69 8 9.67E02 49.9
LYM 164 12813. 5 B 0.22 1 2.28E02 142.7 CONTR OL G 0.46 6 0
LYM23 12782. 7 B 0.12 5 2.52E02 36.8 LYM 107 1263 3.4 H 0.08 1 0.00E +00 83.3
LYM217 13181. 7 B 0.12 4 3.28E02 35.6 LYM 107 1263 1.4 H 0.07 8 0.00E +00 75.7
LYM23 12782. 6 B 0.16 3.33E02 76 LYM117 1362 2.6 H 0.08 0.00E +00 79.3
LYM273 13722. 3 B 0.14 8 4.38E02 62.3 LYM157 1334 1.4 H 0.09 2 0.00E +00 108
LYM 122 13712. 1 B 0.14 7 4.52E02 61.4 LYM157 1334 1.1 H 0.08 0.00E +00 80.9
LYM251 13072. 6 B 0.23 1 4.55E02 153.2 LYM213 1284 1.6 H 0.11 1 0.00E +00 149.2
LYM251 13074. 6 B 0.12 8 4.80E02 40.5 LYM52 1289 4.8 H 0.10 3 0.00E +00 131.6
LYM131 12791. 5 B 0.13 6 5.54E02 49.2 LYM52 1289 1.8 H 0.09 3 0.00E +00 108.9
LYM240 12682. 1 B 0.16 4 5.66E02 80.3 LYM52 1289 5.7 H 0.08 3 0.00E +00 87
LYM 122 13713. 2 B 0.14 6 5.87E02 60.6 LYM90 1239 5.3 H 0.07 6 0.00E +00 71
LYM23 12784. 6 B 0.18 6.16E02 97.8 LYM68 1194 2.2 H 0.07 4 1.00E06 67.4
LYM79 13133. 3 B 0.13 1 6.29E02 43.3 LYM52 1289 4.6 H 0.07 5 2.00E06 68.1
LYM 122 13714. 2 B 0.17 6 6.66E02 93.6 LYM157 1334 1.3 H 0.08 5 3.00E06 92.7
LYM249 13631. 2 B 0.17 2 6.94E02 88.8 LYM213 1284 1.8 H 0.07 4 1.70E05 66.3
LYM224 13435. 1 B 0.22 5 7.12E02 146.6 LYM248 1350 1.6 H 0.06 9 3.10E05 56.2
LYM217 13183. B 0.19 7.76E- 115.6 LYM90 1239 H 0.06 3.80E- 54.1
375
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 7 02 4.2 8 05
LYM23 12783. 5 B 0.16 2 8.12E02 112 LYM 107 1263 1.1 H 0.07 3 4.60E05 65.3
LYM217 13181. 6 B 0.14 5 8.35E02 59 LYM68 1194 3.5 H 0.06 9 6.60E05 54.6
LYM40 13732. 1 B 0.14 3 8.41E02 56.4 LYM52 1289 4.7 H 0.07 4 1.57E04 66.8
LYM79 13133. 1 B 0.15 6 9.62E02 70.9 LYM90 1239 2.1 H 0.06 8 2.75E04 52.6
LYM273 13722. 4 B 0.14 9.64E02 54 LYM213 1284 1.7 H 0.07 5.36E04 58.5
CONTR OL B 0.09 1 0 LYM157 1334 1.7 H 0.07 7.79E04 57.3
LYM 122 13714. 4 C 0.90 5 0.00E +00 135.4 LYM117 1362 4.7 H 0.06 2 2.19E03 39.2
LYM 122 13713. 2 C 0.68 1 0.00E +00 77 LYM117 1362 4.4 H 0.06 4.46E03 35.7
LYM131 12793. 3 C 0.66 3 0.00E +00 72.4 LYM248 1350 2.7 H 0.06 3 4.46E03 41
LYM 164 12813. 5 C 0.93 3 0.00E +00 142.7 LYM 180 1344 1.7 H 0.06 4.78E03 35
LYM 193 13482. 4 C 0.74 5 0.00E +00 93.9 LYM117 1362 3.9 H 0.05 9 7.75E03 31.9
LYM217 13181. 6 C 0.85 9 0.00E +00 123.4 LYM68 1194 1.4 H 0.06 9.46E03 36.1
LYM23 12783. 7 C 0.78 0.00E +00 102.9 LYM 180 1344 1.5 H 0.05 8 1.89E02 30.4
LYM245 13062. 5 C 0.77 3 0.00E +00 101.1 LYM 107 1263 2.1 H 0.05 7 1.94E02 29.2
LYM245 13061. 6 C 0.64 6 0.00E +00 68 LYM90 1239 3.1 H 0.06 2.02E02 36.1
LYM249 13631. 2 C 0.88 6 0.00E +00 130.4 LYM68 1194 1.3 H 0.05 7 2.16E02 29.1
LYM249 13633. 1 C 0.84 4 0.00E +00 119.6 LYM157 1334 2.4 H 0.05 9 2.17E02 33.1
LYM251 13073. 8 C 1.06 0.00E +00 175.7 LYM68 1194 2.3 H 0.06 3 2.18E02 42.3
LYM251 13073. 7 C 0.91 8 0.00E +00 138.9 LYM 180 1344 2.6 H 0.05 7 3.88E02 27.7
LYM251 13072. 6 C 0.77 7 0.00E +00 102.2 LYM117 1362 1.8 H 0.05 5 5.30E02 24.2
LYM251 13072. 8 C 0.77 0.00E +00 100.4 CONTR OL H 0.04 4 0
LYM251 13074. 6 C 0.75 5 0.00E +00 96.5 LYM268 1248 2.3 A 0.00 4 6.00E06 66.2
LYM273 13723. 1 C 0.88 6 0.00E +00 130.5 LYM 140 1226 1.2 A 0.00 4 5.80E05 59.4
LYM273 13721. 3 C 0.75 5 0.00E +00 96.3 LYM 162 1223 1.3 A 0.00 6 7.40E05 130.9
LYM273 13722. 4 C 0.66 5 0.00E +00 73 LYM 13 1177 4.1 A 0.00 6 1.23E04 132.9
LYM274 13414. 2 C 0.85 5 0.00E +00 122.3 LYM 140 1226 1.1 A 0.00 5 2.00E04 74.9
376
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM274 13415. 2 C 0.84 7 0.00E +00 120.2 LYM134 1231 4.2 A 0.00 4 3.70E04 68.1
LYM274 13413. 4 c 0.82 4 0.00E +00 114.4 LYM162 1223 4.3 A 0.00 8 7.16E04 204.3
LYM40 13734. 2 c 0.61 1 0.00E +00 58.9 LYM132 1227 1.4 A 0.00 5 8.37E04 79.7
LYM79 13132. 2 c 0.81 1 0.00E +00 110.9 LYM140 1226 1.4 A 0.00 4 1.14E03 47.8
LYM79 13133. 1 c 0.71 0.00E +00 84.6 LYM289 1249 1.1 A 0.00 5 1.21E03 110.6
LYM79 13134. 3 c 0.63 8 0.00E +00 66 LYM290 1250 4.1 A 0.00 4 2.88E03 49.8
LYM249 13631. 4 c 0.59 4 1.00E06 54.4 LYM290 1250 2.4 A 0.00 5 3.71E03 101.9
LYM122 13712. 3 c 0.62 4 2.00E06 62.3 LYM113 1244 4.4 A 0.00 5 3.73E03 104.8
LYM273 13722. 3 c 0.65 2.00E06 69.2 LYM140 1226 2.2 A 0.00 7 4.11E03 187.9
LYM23 12784. 6 c 0.62 5 3.00E06 62.5 LYM134 1231 2.4 A 0.00 6 5.01E03 122.2
LYM224 13435. 1 c 0.69 1 4.00E06 79.7 LYM268 1248 3.4 A 0.00 6 5.96E03 150.2
LYM249 13631. 1 c 0.57 4 7.00E06 49.3 LYM132 1227 5.3 A 0.00 5 7.41E03 73.9
LYM40 13732. 1 c 0.72 8 1.00E05 89.4 LYM268 1248 2.1 A 0.00 9 1.25E02 246.9
LYM79 13133. 3 c 0.58 9 1.50E05 53.1 LYM102 1222 2.3 A 0.01 3 1.32E02 387.9
LYM240 12682. 1 c 0.89 8 1.80E05 133.5 LYM3 1204 1.2 A 0.00 5 1.33E02 107.7
LYM131 12791. 8 c 0.73 4 3.10E05 90.9 LYM289 1249 3.2 A 0.00 6 1.44E02 144.4
LYM274 13413. 1 c 0.61 7 4.50E05 60.5 LYM3 1204 2.1 A 0.00 5 1.46E02 108.7
LYM260 13095. 7 c 0.58 6 7.10E05 52.5 LYM162 1223 4.4 A 0.00 5 1.69E02 101
LYM23 12782. 6 c 0.63 5 8.80E05 65.2 LYM113 1244 4.5 A 0.00 5 1.98E02 96.1
LYM40 13732. 2 c 0.57 1.08E04 48.4 LYM113 1244 2.2 A 0.00 5 2.39E02 95.2
LYM260 13095. 1 c 0.76 9 1.25E04 100 LYM289 1249 2.2 A 0.00 8 2.43E02 194.7
LYM122 13712. 1 c 0.59 4 1.35E04 54.4 LYM106 1214 2.1 A 0.00 9 2.45E02 261.4
LYM164 12814. 8 c 0.56 5 2.55E04 47 LYM113 1244 2.1 A 0.00 6 2.58E02 136.7
LYM245 13064. 8 c 0.57 9 3.35E04 50.6 LYM132 1227 3.2 A 0.00 3 2.75E02 25.6
LYM122 13714. 2 c 0.61 8 3.64E04 60.6 LYM134 1231 2.3 A 0.00 7 2.91E02 155.1
LYM164 12814. 7 c 0.56 8 5.97E04 47.6 LYM148 1217 3.1 A 0.00 6 2.96E02 130
LYM224 13434. c 0.54 8.91E- 41.8 LYM13 1177 A 0.00 2.97E- 36.2
377
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 5 04 2.2 4 02
LYM164 12813. 8 C 0.53 4 9.49E04 38.8 LYM132 1227 6.1 A 0.00 8 3.01E02 206.3
LYM224 13435. 5 c 0.55 4 1.23E03 44 LYM129 1257 3.1 A 0.00 4 3.03E02 71
LYM193 13484. 4 c 0.53 1 1.25E03 38 LYM102 1222 2.1 A 0.01 2 3.89E02 345.4
LYM23 12783. 8 c 0.51 5 1.59E03 33.9 LYM134 1231 1.2 A 0.00 6 4.57E02 122.2
LYM193 13484. 3 c 0.53 7 2.28E03 39.7 LYM268 1248 1.1 A 0.00 4 5.25E02 72.9
LYM217 13182. 1 c 0.54 4 3.30E03 41.4 LYM10 1174 4.5 A 0.00 4 5.94E02 47.8
LYM249 13631. 3 c 0.49 4 5.23E03 28.5 LYM148 1217 2.1 A 0.00 6 6.12E02 116.4
LYM79 13134. 2 c 0.50 4 8.40E03 31.1 LYM113 1244 3.1 A 0.00 8 6.54E02 197.6
LYM273 13721. 1 c 0.50 5 1.06E02 31.4 LYM289 1249 1.4 A 0.00 4 6.60E02 52.7
LYM260 13095. 8 c 0.49 7 1.36E02 29.2 LYM102 1222 2.2 A 0.00 8 7.00E02 222.7
LYM23 12782. 7 c 0.50 3 1.53E02 30.9 LYM10 1174 2.2 A 0.00 4 8.72E02 44
LYM245 13061. 8 c 0.48 3 1.73E02 25.7 LYM13 1177 2.1 A 0.00 5 9.00E02 77.8
LYM23 12783. 5 c 0.48 7 1.88E02 26.7 LYM129 1257 3.5 A 0.00 5 9.06E02 85.5
LYM217 13181. 7 c 0.47 9 3.48E02 24.7 LYM102 1222 1.1 A 0.00 7 9.14E02 183.1
LYM224 13432. 1 c 0.46 5 3.71E02 21 LYM106 1214 4.4 A 0.00 4 9.31E02 66.2
CONTR OL c 0.38 4 0 LYM3 1204 3.2 A 0.00 4 9.69E02 70
LYM122 13713. 2 D 6.38 8 0.00E +00 77 CONTR OL A 0.00 3 0
LYM249 13631. 4 D 5.39 8 0.00E +00 49.6 LYM13 1177 4.1 B 0.13 2 3.00E06 64.6
LYM273 13723. 1 D 7.90 7 0.00E +00 119.1 LYM3 1204 1.2 B 0.13 4 2.20E04 66.7
LYM249 13631. 3 D 4.59 9 3.10E05 27.4 LYM162 1223 4.3 B 0.18 6 4.15E04 131.8
LYM249 13631. 1 D 5.21 5 4.80E05 44.5 LYM162 1223 4.4 B 0.12 6.94E04 49.1
LYM251 13073. 8 D 9.27 6 2.48E04 157 LYM140 1226 1.2 B 0.10 3 8.53E04 28
LYM131 12793. 3 D 5.81 7 2.93E04 61.2 LYM3 1204 3.2 B 0.10 4 3.07E03 29.9
LYM164 12813. 5 D 8.33 4 4.25E04 130.9 LYM290 1250 2.4 B 0.13 3.23E03 61.6
LYM245 13061. 6 D 6.16 3 1.03E03 70.8 LYM132 1227 6.1 B 0.15 9 3.74E03 98.1
LYM273 13722. 4 D 5.99 7 1.03E03 66.2 LYM162 1223 1.3 B 0.13 6 5.97E03 69.7
378
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM23 12783. 8 D 4.63 1 2.39E03 28.3 LYM134 1231 2.3 B 0.15 7 6.63E03 95.2
LYM40 13734. 2 D 5.44 6 2.86E03 50.9 LYM289 1249 1.1 B 0.12 8 7.98E03 59
LYM217 13181. 6 D 7.55 6 3.51E03 109.4 LYM140 1226 2.2 B 0.17 4 8.75E03 117.3
LYM224 13432. 1 D 4.16 5 4.08E03 15.4 LYM132 1227 5.3 B 0.11 4 8.82E03 41.5
LYM274 13415. 2 D 7.41 9 4.10E03 105.6 LYM289 1249 2.2 B 0.19 1.16E02 137.4
LYM251 13074. 6 D 6.66 6 4.94E03 84.7 LYM268 1248 2.1 B 0.19 2 1.21E02 139.2
LYM249 13633. 1 D 8 4.95E03 121.7 LYM113 1244 2.1 B 0.14 5 1.30E02 80.3
LYM23 12783. 7 D 7.13 7 6.65E03 97.7 LYM268 1248 3.4 B 0.13 2 1.32E02 64.2
LYM79 13134. 3 D 5.54 7.39E03 53.5 LYM3 1204 2.1 B 0.14 2 1.38E02 77.1
LYM122 13714. 4 D 8.31 5 8.23E03 130.4 LYM290 1250 4.1 B 0.09 5 1.49E02 17.8
LYM79 13133. 1 D 6.17 9 1.22E02 71.2 LYM148 1217 3.1 B 0.14 1 1.51E02 75.8
LYM79 13132. 2 D 7.31 5 1.42E02 102.7 LYM134 1231 2.4 B 0.13 9 1.55E02 73.1
LYM251 13072. 6 D 7.17 5 1.42E02 98.8 LYM290 1250 2.1 B 0.09 6 1.59E02 20
LYM251 13073. 7 D 8.23 1.56E02 128 LYM106 1214 4.4 B 0.10 3 1.67E02 28.3
LYM251 13072. 8 D 6.89 6 1.59E02 91.1 LYM102 1222 2.3 B 0.25 2 2.42E02 213.8
LYM273 13721. 3 D 6.84 4 1.74E02 89.6 LYM148 1217 2.1 B 0.12 7 2.50E02 58.1
LYM274 13414. 2 D 7.66 7 1.85E02 112.4 LYM106 1214 2.1 B 0.19 4 2.73E02 141.6
LYM245 13062. 5 D 6.54 3 2.21E02 81.3 LYM102 1222 2.1 B 0.23 7 3.04E02 195.1
LYM40 13732. 2 D 5.37 3 2.26E02 48.9 LYM113 1244 4.5 B 0.13 3 3.89E02 65.3
LYM122 13712. 3 D 5.38 4 2.45E02 49.2 LYM129 1257 3.5 B 0.13 5 3.90E02 67.9
LYM224 13435. 1 D 6.55 4 2.96E02 81.6 LYM129 1257 1.3 B 0.15 1 4.13E02 88.4
LYM249 13631. 2 D 7.72 3.46E02 113.9 LYM268 1248 2.3 B 0.09 4 4.38E02 17.1
LYM273 13722. 3 D 5.77 7 3.61E02 60.1 LYM113 1244 4.4 B 0.13 6 4.55E02 69.1
LYM79 13133. 3 D 5.12 6 3.67E02 42 LYM289 1249 3.2 B 0.13 4.69E02 62.4
LYM23 12784. 6 D 5.42 8 3.91E02 50.4 LYM113 1244 3.1 B 0.18 6 5.16E02 131.8
LYM193 13482. 4 D 6.65 4 4.51E02 84.4 LYM134 1231 1.2 B 0.13 9 5.91E02 73.4
LYM193 13484. D 4.89 4.61E- 35.6 LYM132 1227 B 0.10 6.45E- 31.3
379
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
4 5 02 1.4 5 02
LYM274 13413. 4 D 7.88 9 4.88E02 118.6 LYM129 1257 3.1 B 0.11 4 6.88E02 41.7
LYM193 13481. 2 D 4.14 5.04E02 14.7 LYM140 1226 1.4 B 0.09 6 7.22E02 19.9
LYM40 13732. 1 D 6.93 9 5.19E02 92.3 LYM106 1214 1.4 B 0.12 1 7.36E02 50.4
LYM122 13712. 1 D 5.60 8 5.71E02 55.4 LYM102 1222 2.2 B 0.19 2 7.66E02 139.1
LYM164 12813. 8 D 4.76 6 6.09E02 32 LYM162 1223 3.2 B 0.11 4 8.96E02 42.5
LYM164 12814. 8 D 5.12 6 6.17E02 42 LYM140 1226 1.1 B 0.09 6 9.02E02 19.5
LYM240 12682. 1 D 8.44 4 6.37E02 134 LYM13 1177 2.2 B 0.13 1 9.05E02 63.5
LYM260 13095. 7 D 5.14 7 6.73E02 42.6 CONTR OL B 0.08 0
LYM274 13413. 1 D 5.52 8 7.60E02 53.2 LYM102 1222 2.3 C 1.24 2 0.00E +00 203.7
LYM23 12783. 5 D 4.38 8 7.70E02 21.6 LYM102 1222 2.1 C 1.14 8 0.00E +00 180.7
LYM131 12791. 8 D 6.88 2 8.02E02 90.7 LYM106 1214 2.1 C 0.74 4 0.00E +00 82.1
LYM193 13484. 3 D 5.01 9 9.01E02 39.1 LYM113 1244 4.4 C 0.80 5 0.00E +00 96.9
CONTR OL D 3.60 9 0 LYM113 1244 3.1 C 0.79 4 0.00E +00 94.1
LYM251 13073. 8 E 0.58 4 1.00E06 58.3 LYM129 1257 3.5 C 0.86 1 0.00E +00 110.7
LYM251 13074. 6 E 0.57 7 1.00E06 56.3 LYM132 1227 6.1 C 0.74 9 0.00E +00 83.3
LYM249 13631. 2 E 0.58 2 4.00E06 57.8 LYM148 1217 3.1 C 0.79 8 0.00E +00 95.1
LYM164 12811. 8 E 0.55 1 6.00E06 49.2 LYM148 1217 2.1 C 0.73 4 0.00E +00 79.5
LYM217 13181. 6 E 0.56 7 1.50E05 53.6 LYM162 1223 4.3 C 0.97 8 0.00E +00 139.2
LYM245 13062. 5 E 0.53 7 3.50E05 45.6 LYM162 1223 1.2 C 0.73 2 0.00E +00 79
LYM245 13064. 8 E 0.52 2 1.42E04 41.5 LYM268 1248 2.3 C 0.78 4 0.00E +00 91.8
LYM122 13713. 2 E 0.52 2 2.35E04 41.5 LYM268 1248 3.4 C 0.76 2 0.00E +00 86.3
LYM164 12813. 5 E 0.54 4 2.41E04 47.5 LYM268 1248 3.2 C 0.74 0.00E +00 81
LYM122 13712. 3 E 0.51 9 2.99E04 40.7 LYM289 1249 2.2 C 0.84 5 0.00E +00 106.7
LYM251 13073. 7 E 0.52 7 4.09E04 42.7 LYM289 1249 1.1 C 0.78 9 0.00E +00 92.9
LYM273 13722. 4 E 0.50 5 9.21E04 36.9 LYM289 1249 3.6 C 0.78 5 0.00E +00 92
LYM273 13723. 1 E 0.50 2 1.54E03 36.1 LYM289 1249 3.2 C 0.72 1 0.00E +00 76.4
380
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM23 12783. 7 E 0.49 3 2.29E03 33.5 LYM290 1250 2.4 C 0.77 7 0.00E +00 90
LYM131 12791. 8 E 0.48 7 2.71E03 31.9 LYM148 1217 3.5 c 0.71 1 1.00E06 73.9
LYM251 13072. 8 E 0.49 8 2.78E03 35 LYM268 1248 2.1 c 0.77 2 1.00E06 88.9
LYM260 13095. 7 E 0.49 1 3.02E03 32.9 LYM290 1250 1.2 c 0.72 4 1.00E06 77.1
LYM249 13631. 1 E 0.48 9 3.23E03 32.5 LYM129 1257 1.3 c 0.77 6 2.00E06 89.9
LYM249 13631. 4 E 0.49 8 3.49E03 34.8 LYM162 1223 1.3 c 0.74 6 2.00E06 82.5
LYM131 12793. 3 E 0.48 6 3.59E03 31.8 LYM102 1222 2.2 c 0.74 8 5.00E06 83.1
LYM251 13072. 6 E 0.48 3 4.03E03 31 LYM10 1174 4.5 c 0.71 1 7.00E06 73.8
LYM79 13132. 2 E 0.47 8 5.43E03 29.6 LYM134 1231 4.2 c 0.65 8 2.30E05 61
LYM79 13134. 3 E 0.47 3 7.86E03 28 LYM10 1174 1.4 c 0.68 3 2.80E05 67
LYM193 13482. 4 E 0.47 8 8.17E03 29.6 LYM113 1244 2.1 c 0.64 8 3.30E05 58.5
LYM79 13133. 1 E 0.48 1 8.28E03 30.4 LYM13 1177 4.1 c 0.64 1 3.30E05 56.7
LYM274 13415. 2 E 0.47 5 9.01E03 28.6 LYM134 1231 1.2 c 0.65 1 7.30E05 59.3
LYM40 13734. 2 E 0.46 9 9.05E03 27.2 LYM289 1249 1.4 c 0.65 4 1.15E04 60
LYM260 13095. 1 E 0.49 6 1.32E02 34.3 LYM148 1217 1.2 c 0.60 8 1.49E04 48.7
LYM224 13434. 2 E 0.46 6 1.34E02 26.4 LYM140 1226 1.4 c 0.62 2 1.52E04 52.1
LYM79 13133. 3 E 0.46 5 1.55E02 25.9 LYM134 1231 2.4 c 0.61 6 1.68E04 50.6
LYM164 12814. 7 E 0.46 7 1.71E02 26.5 LYM148 1217 4.1 c 0.60 8 1.69E04 48.6
LYM274 13413. 4 E 0.47 5 2.10E02 28.6 LYM106 1214 2.2 c 0.64 7 2.21E04 58.2
LYM40 13732. 1 E 0.47 5 2.15E02 28.7 LYM268 1248 1.1 c 0.63 9 2.23E04 56.3
LYM40 13732. 2 E 0.46 2.66E02 24.6 LYM290 1250 2.1 c 0.61 4.18E04 49.3
LYM260 13095. 8 E 0.46 2 2.67E02 25.3 LYM290 1250 4.1 c 0.60 9 6.87E04 48.9
LYM23 12784. 6 E 0.45 3 2.97E02 22.8 LYM113 1244 4.5 c 0.59 6 7.01E04 45.7
LYM274 13414. 2 E 0.45 7 2.97E02 23.7 LYM102 1222 1.1 c 0.64 8 1.55E03 58.5
LYM240 12682. 1 E 0.46 2 4.66E02 25.1 LYM3 1204 2.1 c 0.57 2.95E03 39.4
LYM23 12782. 6 E 0.45 1 5.25E02 22.2 LYM129 1257 3.1 c 0.58 1 3.85E03 42.1
LYM193 13481. E 0.43 6.58E- 18.9 LYM140 1226 c 0.57 4.08E- 40.5
381
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 9 02 2.3 4 03
LYM23 12783. 8 E 0.43 8 8.19E02 18.6 LYM134 1231 2.3 C 0.56 7 4.13E03 38.6
LYM224 13435. 5 E 0.43 8 8.43E02 18.8 LYM 10 1174 1.2 c 0.55 9 4.92E03 36.8
LYM273 13722. 3 E 0.44 9.76E02 19.3 LYM132 1227 3.2 c 0.56 3 5.24E03 37.6
CONTR OL E 0.36 9 0 LYM290 1250 1.3 c 0.55 2 5.82E03 34.9
LYM131 12791. 8 F 6.80 9 0.00E +00 41.1 LYM 106 1214 1.4 c 0.57 7 7.47E03 41.2
LYM251 13073. 8 F 7.17 8 0.00E +00 48.8 LYM 140 1226 1.1 c 0.54 1.12E02 32.2
LYM251 13074. 6 F 7.04 2 0.00E +00 46 LYM3 1204 1.1 c 0.54 7 1.19E02 33.7
LYM251 13073. 7 F 6.98 8 0.00E +00 44.9 LYM132 1227 1.4 c 0.56 5 1.23E02 38.3
LYM251 13072. 6 F 6.46 5 0.00E +00 34 LYM 10 1174 2.2 c 0.56 9 1.23E02 39.3
LYM40 13734. 2 F 5.90 2 0.00E +00 22.3 LYM 140 1226 2.2 c 0.56 1.42E02 36.9
LYM249 13631. 3 F 5.61 7 1.00E06 16.4 LYM 13 1177 2.1 c 0.53 1.46E02 29.6
LYM 164 12811. 8 F 5.94 1 2.00E06 23.1 LYM3 1204 1.2 c 0.52 4 2.55E02 28.1
LYM79 13134. 3 F 5.85 2 2.00E06 21.3 LYM 129 1257 2.2 c 0.52 1 3.13E02 27.5
LYM245 13064. 8 F 6.21 5 3.00E06 28.8 LYM 102 1222 2.6 c 0.52 2 3.24E02 27.7
LYM274 13415. 2 F 6.45 4 1.40E05 33.8 LYM 13 1177 2.2 c 0.51 6 4.80E02 26.2
LYM274 13413. 4 F 6.96 3 4.00E05 44.3 LYM132 1227 5.1 c 0.50 1 6.79E02 22.6
LYM 193 13481. 2 F 5.96 8.50E05 23.5 LYM 162 1223 4.4 c 0.50 1 6.95E02 22.5
LYM79 13132. 2 F 6.12 2 1.83E04 26.9 LYM 13 1177 1.6 c 0.51 9 7.56E02 26.9
LYM 122 13714. 4 F 6.25 4 3.39E04 29.6 LYM 140 1226 1.2 c 0.50 2 8.74E02 22.7
LYM 122 13712. 1 F 6.19 3.43E04 28.3 LYM3 1204 3.2 c 0.49 4 9.78E02 20.9
LYM245 13062. 5 F 5.76 8 3.71E04 19.6 CONTR OL c 0.40 9 0
LYM249 13631. 2 F 6.98 7 4.32E04 44.8 LYM268 1248 2.3 D 6.51 6 0.00E +00 87.6
LYM 193 13482. 4 F 6.30 8 4.55E04 30.8 LYM268 1248 3.4 D 6.28 8 2.00E06 81
LYM217 13181. 6 F 6.75 3 5.78E04 40 LYM148 1217 1.2 D 5.18 9 4.00E05 49.4
LYM 164 12814. 8 F 5.56 1 7.94E04 15.3 LYM289 1249 2.2 D 7.22 3 7.40E05 107.9
LYM131 12793. 3 F 6.00 3 1.10E03 24.4 LYM148 1217 4.1 D 5.09 6 9.60E05 46.7
382
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM23 12783. 7 F 6.27 5 1.34E- 03 30.1 LYMl 40 1226 1.1 D 4.51 2 3.53E04 29.9
LYMl 22 13713. 2 F 6.76 5 1.65E- 03 40.2 LYMl 3 1177 2.1 D 4.46 7 8.33E04 28.6
LYM245 13061. 6 F 6.11 7 3.30E03 26.8 LYM148 1217 3.1 D 6.76 7 1.30E- 03 94.8
LYM273 13722. 4 F 6.08 9 3.52E03 26.2 LYM290 1250 2.4 D 6.42 5 2.00E03 85
LYMl 64 12813. 5 F 6.91 5 5.03E03 43.3 LYMl 62 1223 4.3 D 8.82 2.51E03 153.9
LYM249 13631. 1 F 5.83 5.49E03 20.8 LYMl 62 1223 1.2 D 6.02 6 2.51E03 73.5
LYM273 13723. 1 F 6.30 3 5.56E03 30.6 LYM289 1249 3.6 D 6.41 3 2.68E03 84.6
LYM40 13732. 1 F 6.44 6 6.08E03 33.6 LYM289 1249 3.2 D 5.99 7 3.69E03 72.6
LYM224 13435. 1 F 6.00 1 6.99E03 24.4 LYM132 1227 6.1 D 6.25 7 4.48E03 80.1
LYM240 12682. 1 F 6.59 4 9.82E03 36.7 LYMl 13 1244 2.1 D 5.43 5 4.57E03 56.5
LYMl 22 13712. 3 F 5.82 2 1.17E02 20.7 LYM290 1250 1.3 D 4.57 3 5.64E03 31.7
LYM224 13435. 5 F 5.72 6 1.24E- 02 18.7 LYMl 3 1177 4.1 D 5.36 3 6.31E03 54.4
LYM249 13633. 1 F 6.40 5 1.51E02 32.8 LYM132 1227 5.3 D 4.07 6 6.87E03 17.3
LYM40 13732. 2 F 6.01 5 1.52E02 24.7 LYM148 1217 3.5 D 5.83 6 6.99E03 68
LYM274 13414. 2 F 5.79 2 1.60E02 20.1 LYMl 06 1214 2.1 D 6.27 9 7.68E03 80.8
LYM224 13432. 1 F 5.18 4 1.77E02 7.5 LYMl 13 1244 4.4 D 6.70 6 9.46E03 93
LYM249 13631. 4 F 6.1 2.05E02 26.4 LYMl 13 1244 4.5 D 4.96 5 1.05E- 02 42.9
LYM260 13095. 7 F 5.94 3 2.05E02 23.2 LYMl 02 1222 2.3 D 10.3 47 1.06E02 197.9
LYM260 13095. 1 F 6.16 5 2.12E02 27.8 LYM289 1249 1.1 D 6.56 1.24E02 88.8
LYM251 13072. 8 F 5.90 1 2.20E02 22.3 LYMl 13 1244 3.1 D 6.78 4 1.25E02 95.3
LYMl 64 12814. 7 F 5.8 2.60E02 20.2 LYM268 1248 3.2 D 6.26 3 1.30E02 80.3
LYM274 13413. 1 F 5.83 4 2.70E02 20.9 LYM134 1231 2.4 D 5.22 4 1.38E02 50.4
LYMl 93 13484. 4 F 5.59 9 3.59E02 16.1 LYM134 1231 4.2 D 5.60 9 1.45E02 61.5
LYM79 13133. 1 F 5.78 2 4.30E02 19.8 LYM148 1217 2.1 D 6.05 5 1.59E02 74.3
LYM273 13721. 3 F 5.38 6 4.48E02 11.6 LYMl 40 1226 1.4 D 5.19 2 1.62E02 49.5
LYM79 13133. 3 F 5.45 2 4.87E02 13 LYM290 1250 1.2 D 6.09 7 1.82E02 75.5
LYM23 12782. F 5.25 6.38E- 8.8 LYMl 29 1257 D 7.10 2.09E- 104.6
383
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
7 1 02 3.5 7 02
LYM260 13095. 8 F 5.58 8 9.86E02 15.8 LYM290 1250 2.1 D 5.03 8 2.88E02 45
CONTR OL F 4.82 4 0 LYM3 1204 2.1 D 4.82 3 3.26E02 38.8
LYM224 13435. 3 G 0.76 4 0.00E +00 72.3 LYM162 1223 1.3 D 6.43 4 3.53E02 85.2
LYM40 13734. 2 G 0.56 7 1.08E04 27.9 LYM134 1231 1.2 D 5.55 8 3.62E02 60
LYM273 13722. 4 G 0.85 6 4.09E04 93.1 LYM102 1222 2.1 D 9.50 6 3.77E02 173.6
LYM273 13721. 1 G 0.70 1 6.35E04 58.1 LYM129 1257 2.2 D 4.35 3.96E02 25.2
LYM273 13721. 3 G 1.06 3 7.82E04 139.6 LYM10 1174 1.4 D 5.71 2 4.08E02 64.4
LYM122 13712. 3 G 0.63 2 8.84E04 42.4 LYM129 1257 1.3 D 6.49 5 4.89E02 87
LYM251 13073. 8 G 0.87 9 1.02E03 98.3 LYM3 1204 3.2 D 4.15 2 5.04E02 19.5
LYM23 12783. 5 G 0.66 3 1.60E03 49.5 LYM10 1174 4.5 D 5.88 6 5.04E02 69.4
LYM164 12813. 5 G 0.82 4 3.06E03 85.8 LYM132 1227 5.1 D 4.22 8 5.06E02 21.7
LYM249 13633. 1 G 0.94 4 3.80E03 112.9 LYM10 1174 1.2 D 4.70 1 5.08E02 35.3
LYM79 13132. 2 G 0.88 1 4.30E03 98.7 LYM268 1248 2.1 D 6.36 5.11E02 83.1
LYM217 13182. 1 G 0.79 7 5.62E03 79.6 LYM134 1231 2.3 D 4.74 2 5.15E02 36.5
LYM23 12783. 7 G 0.87 1 6.19E03 96.5 LYM102 1222 2.2 D 6.47 6 5.30E02 86.4
LYM193 13484. 3 G 0.77 7.00E03 73.6 LYM268 1248 1.1 D 5.36 4 5.40E02 54.4
LYM249 13631. 1 G 0.69 6 7.39E03 56.9 LYM162 1223 4.4 D 4.15 4 5.73E02 19.6
LYM251 13072. 8 G 0.80 7 8.13E03 82 LYM290 1250 4.1 D 5.10 5 5.84E02 47
LYM122 13713. 2 G 0.72 1 8.93E03 62.6 LYM3 1204 1.1 D 4.53 8 6.02E02 30.7
LYM274 13414. 2 G 0.89 5 1.25E02 101.9 LYM132 1227 3.2 D 4.75 5 6.21E02 36.9
LYM224 13435. 5 G 0.54 9 1.36E02 23.7 LYM106 1214 2.2 D 5.33 5 6.22E02 53.6
LYM79 13133. 3 G 0.65 2 1.38E02 47.1 LYM289 1249 1.4 D 5.47 2 6.26E02 57.5
LYM217 13181. 11 G 0.67 7 1.41E02 52.7 LYM3 1204 1.2 D 4.40 2 6.70E02 26.7
LYM273 13723. 1 G 0.82 5 1.50E02 86 LYM102 1222 2.6 D 4.51 8 8.47E02 30.1
LYM122 13714. 4 G 0.93 9 1.71E02 111.7 LYM140 1226 2.3 D 4.82 6 8.91E02 38.9
LYM251 13073. 7 G 0.96 4 1.78E02 117.4 LYM129 1257 3.1 D 4.88 8 9.60E02 40.7
384
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM274 13411. 2 G 0.53 2.47E02 19.6 CONTR OL D 3.47 4 0
LYM245 13062. 5 G 0.74 2 2.75E02 67.4 LYM129 1257 3.5 E 0.70 9 4.00E06 62.2
LYM23 12782. 6 G 0.79 4 2.84E02 79.1 LYM289 1249 3.6 E 0.69 7 7.00E06 59.3
LYM274 13413. 4 G 0.79 1 3.21E- 02 78.4 LYM162 1223 1.2 E 0.65 9 7.90E05 50.8
LYM122 13712. 1 G 0.69 5 3.25E02 56.7 LYM102 1222 2.3 E 0.67 5 8.60E05 54.3
LYM245 13061. 6 G 0.82 3.44E02 84.9 LYM290 1250 2.4 E 0.63 2 2.93E04 44.5
LYM23 12784. 6 G 0.75 2 3.82E02 69.6 LYM148 1217 3.5 E 0.62 5 5.90E04 43
LYM251 13072. 6 G 0.90 7 3.90E02 104.5 LYM102 1222 2.1 E 0.63 8 7.08E04 46
LYM251 13074. 6 G 0.64 3 3.93E02 45.1 LYM290 1250 1.2 E 0.62 2 7.15E- 04 42.1
LYM40 13732. 2 G 0.56 3 4.57E02 27 LYM268 1248 2.3 E 0.61 3 1.36E- 03 40.2
LYM23 12782. 7 G 0.54 1 4.89E02 22 LYM10 1174 4.5 E 0.60 7 1.97E03 38.8
LYM217 13181. 7 G 0.56 2 5.20E02 26.7 LYM148 1217 2.1 E 0.6 2.71E03 37.1
LYM217 13183. 2 G 0.91 3 5.21E- 02 106 LYM148 1217 4.1 E 0.59 1 3.47E03 35.1
LYM164 12813. 8 G 0.65 5.77E02 46.5 LYM140 1226 1.4 E 0.59 4.44E03 34.9
LYM273 13722. 3 G 0.63 9 5.87E02 44.1 LYM268 1248 3.4 E 0.59 5 4.63E03 36.1
LYM224 13435. 1 G 0.92 7 5.89E02 108.9 LYM268 1248 3.2 E 0.58 6 5.11E- 03 34.1
LYM217 13181. 6 G 0.62 2 6.07E02 40.2 LYM113 1244 3.1 E 0.58 7.96E03 32.6
LYM274 13415. 2 G 0.71 8 6.41E- 02 61.8 LYM289 1249 1.1 E 0.57 2 1.03E02 30.8
LYM240 12682. 1 G 0.80 8 6.42E02 82.2 LYM289 1249 2.2 E 0.58 2 1.07E02 33.1
LYM79 13133. 1 G 0.60 4 6.96E02 36.2 LYM132 1227 3.2 E 0.56 6 1.31E02 29.5
LYM224 13434. 2 G 0.64 3 7.21E- 02 44.9 LYM290 1250 1.3 E 0.56 6 1.39E02 29.4
LYM122 13714. 2 G 0.78 8.03E02 75.9 LYM106 1214 2.2 E 0.56 5 1.55E02 29.3
LYM245 13064. 8 G 0.56 9 8.26E02 28.3 LYM10 1174 2.2 E 0.56 8 1.60E02 30
LYM40 13732. 1 G 0.68 8.52E02 53.3 LYM13 1177 4.1 E 0.56 2 1.77E02 28.5
LYM249 13631. 2 G 0.80 4 8.60E02 81.3 LYM113 1244 4.4 E 0.55 4 2.37E02 26.7
LYM23 12783. 8 G 0.5 8.97E02 12.7 LYM134 1231 1.2 E 0.55 3 2.63E02 26.4
LYM79 13134. G 0.55 9.71E- 25.7 LYM10 1174 E 0.55 2.69E- 26.7
385
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
3 7 02 1.4 4 02
CONTR OL G 0.44 3 0 LYM10 1174 1.2 E 0.54 8 3.19E- 02 25.4
LYM122 13714. 4 H 0.09 5 0.00E +00 118.7 LYM132 1227 5.1 E 0.55 1 3.90E02 26
LYM122 13713. 2 H 0.07 2 0.00E +00 66.2 LYM132 1227 6.1 E 0.55 3.90E02 25.8
LYM122 13712. 3 H 0.06 4 0.00E +00 47 LYM290 1250 4.1 E 0.54 8 4.08E02 25.2
LYM164 12813. 5 H 0.08 0.00E +00 84.1 LYM129 1257 1.3 E 0.54 9 4.67E02 25.5
LYM193 13484. 3 H 0.07 3 0.00E +00 67 LYM289 1249 3.2 E 0.54 1 5.42E02 23.7
LYM217 13183. 2 H 0.08 9 0.00E +00 104.8 LYM289 1249 1.4 E 0.54 3 5.79E02 24.1
LYM217 13182. 1 H 0.08 4 0.00E +00 93 LYM113 1244 2.1 E 0.54 6.19E- 02 23.4
LYM217 13181. 11 H 0.06 9 0.00E +00 58.8 LYM102 1222 2.2 E 0.54 1 6.54E02 23.6
LYM224 13435. 3 H 0.07 0.00E +00 60.5 LYM134 1231 4.2 E 0.53 7.02E02 21.2
LYM23 12783. 7 H 0.08 9 0.00E +00 104 LYM102 1222 2.6 E 0.52 4 9.02E02 19.9
LYM23 12782. 6 H 0.08 2 0.00E +00 89 LYM140 1226 2.3 E 0.53 1 9.82E02 21.4
LYM23 12784. 6 H 0.07 3 0.00E +00 68.3 CONTR OL E 0.43 7 0
LYM23 12783. 5 H 0.06 6 0.00E +00 51.8 LYM129 1257 3.5 F 7.52 9 0.00E +00 48.8
LYM245 13061. 6 H 0.08 1 0.00E +00 85.2 LYM148 1217 4.1 F 6.57 6 0.00E +00 30
LYM245 13062. 5 H 0.07 8 0.00E +00 79.4 LYM102 1222 2.6 F 6.33 1 1.00E- 06 25.2
LYM249 13633. 1 H 0.09 8 0.00E +00 123.9 LYM134 1231 1.2 F 6.31 4 1.00E- 06 24.8
LYM249 13631. 1 H 0.06 8 0.00E +00 56.9 LYM290 1250 2.4 F 6.93 4 3.00E06 37.1
LYM251 13073. 7 H 0.09 7 0.00E +00 122.4 LYM132 1227 3.2 F 6.46 8 8.00E06 27.9
LYM251 13073. 8 H 0.08 8 0.00E +00 102.1 LYM289 1249 1.1 F 6.65 7 2.20E05 31.6
LYM251 13072. 6 H 0.08 7 0.00E +00 100.7 LYM290 1250 1.3 F 6.05 9 4.00E05 19.8
LYM251 13072. 8 H 0.08 7 0.00E +00 99.1 LYM134 1231 4.2 F 6.20 4 7.70E05 22.6
LYM251 13074. 6 H 0.06 8 0.00E +00 56.4 LYM148 1217 3.1 F 6.77 1.40E- 04 33.8
LYM273 13721. 3 H 0.10 6 0.00E +00 143.3 LYM13 1177 4.1 F 6.45 9 1.53E- 04 27.7
LYM273 13723. 1 H 0.08 9 0.00E +00 104 LYM290 1250 1.2 F 6.82 3 1.66E- 04 34.9
LYM273 13722. 4 H 0.08 1 0.00E +00 85.6 LYM113 1244 4.4 F 6.32 5 1.73E- 04 25
386
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM273 13721. 1 H 0.07 4 0.00E +00 70.2 LYM 10 1174 4.5 F 7.04 4 1.83E04 39.3
LYM273 13722. 3 H 0.06 7 0.00E +00 54.8 LYM268 1248 3.2 F 6.83 1.89E04 35
LYM274 13414. 2 H 0.09 4 0.00E +00 115.6 LYM289 1249 2.2 F 6.92 6 2.40E04 36.9
LYM274 13413. 4 H 0.07 8 0.00E +00 78.9 LYM289 1249 3.6 F 7.10 8 4.29E04 40.5
LYM79 13132. 2 H 0.09 5 0.00E +00 117 LYM148 1217 2.1 F 6.75 4 6.38E04 33.5
LYM79 13133. 3 H 0.07 0.00E +00 60.2 LYM268 1248 2.3 F 6.81 4 7.13E04 34.7
LYM217 13181. 6 H 0.06 6 1.00E06 51.9 LYM113 1244 3.1 F 6.92 5 9.38E04 36.9
LYM249 13631. 2 H 0.08 5 1.00E06 95.9 LYM 140 1226 1.4 F 6.84 7 1.17E03 35.4
LYM274 13415. 2 H 0.07 4 1.00E06 69.9 LYM148 1217 3.5 F 6.56 8 1.48E03 29.8
LYM79 13133. 1 H 0.06 4 1.00E06 47.7 LYM113 1244 4.5 F 6.07 9 1.72E03 20.2
LYM 164 12813. 8 H 0.06 7 2.00E06 54 LYM 102 1222 2.1 F 7.22 6 2.12E03 42.8
LYM224 13435. 1 H 0.08 9 2.00E06 104.8 LYM 10 1174 1.2 F 5.97 6 2.26E03 18.1
LYM240 12682. 1 H 0.08 2 2.00E06 89 LYM 106 1214 2.2 F 6.15 8 2.57E03 21.7
LYM 122 13714. 2 H 0.07 7 5.00E06 77.8 LYM 162 1223 1.2 F 6.89 9 2.78E03 36.4
LYM40 13734. 2 H 0.05 6 5.00E06 28.3 LYM 10 1174 1.4 F 6.12 8 3.19E03 21.2
LYM 122 13712. 1 H 0.06 3 1.70E05 43.7 LYM148 1217 1.2 F 6.27 6 4.06E03 24.1
LYM224 13434. 2 H 0.06 4 2.70E05 47.3 LYM 162 1223 4.3 F 6.65 1 5.16E03 31.5
LYM40 13732. 1 H 0.06 8 3.00E05 55.4 LYM268 1248 3.4 F 6.74 6 5.50E03 33.4
LYM217 13181. 7 H 0.05 7 9.40E05 31.2 LYM 102 1222 2.3 F 7.19 8 7.29E03 42.3
LYM79 13134. 3 H 0.05 7 1.09E04 31.8 LYM289 1249 3.2 F 6.30 5 7.70E03 24.6
LYM260 13095. 7 H 0.06 3 1.15E04 45.5 LYM113 1244 2.1 F 6.43 8 1.27E02 27.3
LYM23 12782. 7 H 0.05 6 1.57E04 28 LYM 102 1222 2.2 F 6.67 7 1.28E02 32
LYM40 13732. 2 H 0.05 6 1.93E04 28.4 LYM290 1250 4.1 F 6.29 6 1.34E02 24.5
LYM131 12791. 5 H 0.06 3.33E04 37.3 LYM132 1227 5.1 F 6.32 2 1.46E02 25
LYM245 13064. 8 H 0.05 7 4.25E04 29.9 LYM132 1227 5.3 F 5.86 3 1.47E02 15.9
LYM274 13411. 2 H 0.05 3 6.16E04 22.6 LYM132 1227 6.1 F 6.53 6 1.48E02 29.2
LYM79 13134. H 0.05 1.51E- 24.6 LYM 106 1214 F 6.22 1.59E- 23
387
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 4 03 2.1 02
LYM260 13095. 1 H 0.07 2.31E03 61.7 LYM 10 1174 2.2 F 6.22 6 1.66E02 23.1
LYM23 12783. 8 H 0.05 2 2.84E03 18.8 LYM 106 1214 1.4 F 5.81 1 2.02E02 14.9
LYM274 13413. 1 H 0.05 5 9.12E03 25.3 LYM 162 1223 1.3 F 6.50 8 2.18E02 28.7
LYM249 13631. 4 H 0.05 1 9.60E03 17.4 LYM 129 1257 1.3 F 6.49 9 3.26E02 28.5
LYM 164 12814. 8 H 0.06 1 1.06E02 39.9 LYM 13 1177 2.2 F 6.13 3.39E02 21.2
LYM224 13435. 5 H 0.05 1.25E02 15.3 LYM132 1227 1.4 F 5.81 4 4.00E02 14.9
LYM131 12791. 8 H 0.06 4 1.66E02 47.4 LYM 13 1177 2.1 F 5.74 3 6.50E02 13.5
LYM 193 13482. 4 H 0.05 5 2.52E02 26.1 LYM 129 1257 3.1 F 5.78 3 6.75E02 14.3
LYM260 13095. 8 H 0.05 2 4.62E02 19.8 LYM 13 1177 3.2 F 5.50 5 6.85E02 8.8
LYM224 13432. 1 H 0.04 9 4.71E02 13 LYM3 1204 2.1 F 5.67 3 6.99E02 12.1
CONTR OL H 0.04 4 0 LYM268 1248 1.1 F 6.05 6 7.44E02 19.7
LYM 122 13711. 3 A 0.01 1 1.00E06 231.7 LYM134 1231 2.4 F 6.02 8 9.99E02 19.2
LYM234 14093. 2 A 0.01 2.10E05 192.5 CONTR OL F 5.05 8 0
LYM 189 13315. 2 A 0.01 5.08E04 197.1 LYM134 1231 2.4 G 0.70 4 0.00E +00 57.1
LYM217 13183. 2 A 0.00 8 5.11E04 130.3 LYM 140 1226 1.2 G 0.63 6 0.00E +00 42
LYM 189 13314. 5 A 0.00 5 9.45E04 67.4 LYM 162 1223 4.3 G 0.91 2 1.00E06 103.5
LYM79 13134. 3 A 0.00 5 9.97E04 62 LYM290 1250 2.4 G 0.66 7 1.30E05 48.9
LYM161 13233. 5 A 0.00 7 1.28E03 124.2 LYM 162 1223 4.4 G 0.75 5.67E04 67.5
LYM217 13186. 1 A 0.01 2 1.32E03 275.4 LYM 140 1226 2.2 G 0.90 3 6.14E04 101.7
LYM217 13181. 9 A 0.00 8 1.81E03 134.2 LYM132 1227 6.1 G 0.82 1 1.92E03 83.4
LYM32 13964. 1 A 0.00 8 2.09E03 144.9 LYM 140 1226 1.4 G 0.54 3 2.25E03 21.2
LYM234 14092. 5 A 0.01 2 2.20E03 277 LYM 13 1177 2.2 G 0.63 4 3.99E03 41.6
LYM240 12683. 5 A 0.01 2.37E03 192.5 LYM289 1249 2.2 G 0.88 4.21E03 96.5
LYM219 13332. 9 A 0.01 1 3.78E03 233.2 LYM132 1227 1.4 G 0.60 9 4.24E03 36
LYM278 13364. 5 A 0.00 4 3.79E03 24.4 LYM289 1249 1.1 G 0.69 1 5.40E03 54.3
LYM245 13061. 8 A 0.01 3 3.90E03 306.9 LYM268 1248 2.1 G 0.93 6 6.27E03 108.9
388
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM234 14092. 1 A 0.00 5 5.44E03 42 LYM3 1204 1.2 G 0.66 1 6.62E03 47.6
LYM74 13954. 1 A 0.01 4 8.73E03 315.4 LYM 162 1223 1.3 G 0.74 8 7.40E03 67
LYM74 13954. 2 A 0.00 9 1.17E02 175.6 LYM268 1248 3.4 G 0.71 7 7.99E03 60.2
LYM188 13244. 6 A 0.00 5 1.21E02 53.6 LYM290 1250 4.1 G 0.56 2 8.97E03 25.4
LYM 189 13311. 3 A 0.00 9 1.35E02 186.4 LYM3 1204 3.2 G 0.63 5 9.85E03 41.8
LYM 189 13311. 2 A 0.01 1.83E02 194.8 LYM148 1217 3.1 G 0.84 9 1.05E02 89.5
LYM274 13415. 2 A 0.01 2 1.98E02 273.9 LYM 13 1177 4.1 G 0.78 9 1.16E02 76.1
LYM79 13132. 2 A 0.01 3 2.07E02 300 LYM 140 1226 1.1 G 0.52 1 1.27E02 16.3
LYM217 13182. 1 A 0.01 2 2.10E02 269.3 LYM 106 1214 2.1 G 0.91 9 1.37E02 105.3
LYM240 12682. 1 A 0.01 2 2.22E02 264.7 LYM134 1231 2.3 G 0.78 1 1.42E02 74.4
LYM 189 13315. 1 A 0.01 7 2.23E02 422.8 LYM3 1204 2.1 G 0.69 3 2.41E02 54.8
LYM188 13244. 7 A 0.00 6 2.61E02 87.3 LYM113 1244 2.1 G 0.70 2 2.51E02 56.8
LYM79 13133. 2 A 0.00 9 3.08E02 161.8 LYM 102 1222 2.3 G 1.04 2.56E02 132.2
LYM79 13133. 3 A 0.00 9 3.18E02 183.3 LYM113 1244 4.5 G 0.67 2 3.11E02 50
LYM 189 13314. 4 A 0.00 9 3.27E02 167.9 LYM289 1249 3.2 G 0.74 7 3.12E02 66.7
LYM188 13244. 4 A 0.01 3.40E02 220.2 LYM 129 1257 3.5 G 0.69 3.20E02 54.1
LYM79 13134. 1 A 0.01 3.50E02 194.8 LYM113 1244 4.4 G 0.64 7 3.21E02 44.4
LYM274 13413. 1 A 0.00 9 3.63E02 166.4 LYM134 1231 1.2 G 0.70 2 3.87E02 56.7
LYM234 14092. 8 A 0.01 2 3.81E02 268.5 LYM 129 1257 3.1 G 0.58 2 3.90E02 30
LYM74 13952. 2 A 0.00 9 3.97E02 181 LYM132 1227 5.3 G 0.61 4 3.97E02 37
LYM32 13963. 4 A 0.00 8 4.02E02 151.8 LYM113 1244 3.1 G 0.86 5 4.24E02 93.2
LYM274 13413. 4 A 0.00 9 4.20E02 169.5 LYM 102 1222 2.1 G 1.12 4 4.88E02 151
LYM234 14091. 1 A 0.00 8 4.79E02 131.1 LYM 106 1214 4.4 G 0.63 8 5.62E02 42.4
LYM161 13233. 6 A 0.01 5.45E02 220.9 LYM 102 1222 2.2 G 0.88 7 6.97E02 98.1
LYM240 12683. 9 A 0.00 4 5.60E02 28.2 LYM148 1217 2.1 G 0.64 9 7.46E02 44.8
LYM79 13131. 1 A 0.00 7 6.26E02 116.5 LYM 102 1222 1.1 G 0.74 4 7.72E02 66.1
LYM32 13963. A 0.00 6.95E- 49.7 LYM 10 1174 G 0.55 8.52E- 24.1
389
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 5 02 4.5 6 02
LYM273 13721. 3 A 0.00 6 7.08E02 80.4 LYM290 1250 1.2 G 0.66 4 9.90E02 48.2
LYM79 13134. 2 A 0.00 4 7.89E02 32.8 CONTR OL G 0.44 8 0
LYM217 13181. 6 A 0.00 5 8.18E02 61.2 LYM 102 1222 2.1 H 0.11 8 0.00E +00 160.6
LYM 122 13713. 4 A 0.00 5 9.83E02 51.2 LYM 102 1222 2.3 H 0.11 3 0.00E +00 149.3
CONTR OL A 0.00 3 0 LYM 106 1214 2.1 H 0.09 1 0.00E +00 101.4
LYM161 13233. 5 B 0.14 6 0.00E +00 123.8 LYM132 1227 6.1 H 0.08 4 0.00E +00 85.3
LYM 189 13314. 5 B 0.10 3 0.00E +00 57.6 LYM 140 1226 2.2 H 0.08 8 0.00E +00 94.1
LYM234 14093. 2 B 0.18 1 3.00E06 177.1 LYM148 1217 3.1 H 0.08 4 0.00E +00 86.3
LYM32 13964. 1 B 0.14 5 5.12E- 04 122.8 LYM 162 1223 4.3 H 0.09 1 0.00E +00 100.3
LYM234 14092. 5 B 0.21 9 6.15E- 04 235.5 LYM268 1248 2.1 H 0.09 4 0.00E +00 108.2
LYM 122 13711. 3 B 0.22 5 6.83E04 245.3 LYM289 1249 2.2 H 0.09 2 0.00E +00 104
LYM240 12683. 5 B 0.17 9 8.14E- 04 173.6 LYM 13 1177 4.1 H 0.07 9 1.00E- 06 74.4
LYM245 13061. 8 B 0.24 1.32E- 03 268.1 LYM 162 1223 4.4 H 0.07 4 3.00E06 64.8
LYM217 13186. 1 B 0.19 7 1.61E- 03 202.2 LYM268 1248 3.4 H 0.07 6 3.00E06 68.5
LYM217 13183. 2 B 0.14 4 1.66E- 03 120.5 LYM134 1231 2.3 H 0.07 7 4.00E06 70
LYM 189 13315. 2 B 0.21 2 4.60E03 224.4 LYM113 1244 3.1 H 0.08 7 5.00E06 91.5
LYM219 13332. 9 B 0.19 4 5.69E03 197.9 LYM 162 1223 1.3 H 0.07 4 8.00E06 63.1
LYM74 13954. 2 B 0.15 7 7.07E03 141.3 LYM290 1250 2.4 H 0.07 1 1.30E- 05 57.2
LYM217 13182. 1 B 0.23 1 7.34E03 253.5 LYM 129 1257 3.5 H 0.07 5 2.20E05 66.3
LYM234 14092. 1 B 0.08 7 7.90E03 33 LYM134 1231 2.4 H 0.06 9 3.10E- 05 52.5
LYM278 13364. 5 B 0.07 6 8.29E03 17 LYM 102 1222 2.2 H 0.08 7 7.00E05 91.6
LYM74 13954. 1 B 0.24 8 8.32E03 280 LYM289 1249 1.1 H 0.06 9 9.40E05 53.2
LYM217 13181. 9 B 0.15 1 8.57E03 130.7 LYM113 1244 4.4 H 0.07 1 1.12E- 04 56.9
LYM 189 13311. 2 B 0.17 4 8.79E03 166.7 LYM134 1231 1.2 H 0.07 1 1.62E- 04 57.5
LYM32 13963. 4 B 0.16 3 8.96E03 149.3 LYM 102 1222 1.1 H 0.07 6 2.25E04 68.8
LYM240 12683. 9 B 0.07 7 9.39E03 18.7 LYM289 1249 3.2 H 0.07 1 2.37E04 57.5
390
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM 189 13311. 3 B 0.17 6 1.20E02 169 LYM3 1204 2.1 H 0.06 8 4.18E04 49.7
LYM79 13134. 1 B 0.17 3 1.36E02 165.4 LYM113 1244 2.1 H 0.06 7 7.34E04 49.1
LYM79 13133. 3 B 0.16 9 1.42E02 158.3 LYM148 1217 2.1 H 0.06 8 8.70E04 50.9
LYM240 12682. 1 B 0.20 2 1.49E02 209.5 LYM 129 1257 1.3 H 0.07 1.22E- 03 54.8
LYM79 13132. 2 B 0.23 7 1.69E02 262.6 LYM113 1244 4.5 H 0.06 6 1.82E- 03 45.3
LYM188 13244. 7 B 0.11 6 1.77E02 77.9 LYM290 1250 1.2 H 0.06 8 1.94E- 03 50
LYM188 13244. 6 B 0.10 2 2.08E02 56.2 LYM3 1204 1.2 H 0.06 3 2.54E03 38.7
LYM 189 13315. 1 B 0.28 1 2.09E02 330 LYM 140 1226 1.2 H 0.06 1 4.70E03 34.5
LYM79 13134. 2 B 0.08 7 2.10E02 33.3 LYM3 1204 3.2 H 0.06 1 6.01E- 03 35.8
LYM 189 13314. 4 B 0.15 8 2.19E02 141.4 LYM132 1227 5.3 H 0.06 1 9.29E03 34.2
LYM188 13244. 4 B 0.19 6 2.23E02 200.6 LYM 13 1177 2.2 H 0.06 9.79E03 32.3
LYM161 13233. 6 B 0.18 5 2.28E02 183.3 LYM 106 1214 1.4 H 0.06 3 1.25E- 02 39.7
LYM274 13415. 2 B 0.21 7 2.29E02 232.4 LYM 106 1214 4.4 H 0.06 1.94E02 32.6
LYM274 13413. 4 B 0.15 2 2.34E02 133.3 LYM268 1248 1.1 H 0.06 1 2.01E02 34.4
LYM234 14091. 1 B 0.14 9 2.38E02 129 LYM134 1231 4.2 H 0.05 9 2.35E02 29.9
LYM79 13133. 2 B 0.15 6 2.45E02 139.7 LYM 129 1257 3.1 H 0.05 7 3.09E02 27.1
LYM79 13134. 3 B 0.10 9 2.50E02 67.5 LYM132 1227 1.4 H 0.05 7 3.88E02 25.2
LYM273 13721. 3 B 0.11 2 2.82E02 71.3 LYM113 1244 2.2 H 0.05 9 3.90E02 30
LYM274 13413. 1 B 0.16 7 3.18E- 02 156.6 LYM 10 1174 4.5 H 0.05 6 5.50E02 24.8
LYM217 13181. 6 B 0.1 3.59E02 53.3 LYM290 1250 4.1 H 0.05 6 5.52E02 23
LYM234 14092. 8 B 0.20 8 3.90E02 219.4 LYM 129 1257 2.2 H 0.05 5 9.34E02 21.4
LYM32 13963. 1 B 0.09 3 5.12E- 02 42.1 LYM289 1249 1.4 H 0.05 6 9.88E02 23.2
LYM74 13952. 2 B 0.15 4 5.75E02 136.2 CONTR OL H 0.04 5 0
LYM79 13131. 1 B 0.15 2 6.99E02 133.1 LYM248 1350 2.6 A 0.00 4 1.00E- 05 49
LYM161 13234. 6 B 0.13 6 7.51E- 02 108.5 LYM79 1313 4.7 A 0.00 4 6.75E04 67
LYM219 13334. 8 B 0.11 4 7.99E02 74.8 LYM157 1334 1.4 A 0.00 6 1.12E- 03 127
LYM219 13331. B 0.14 9.01E- 127.7 LYM 180 1344 A 0.00 1.29E- 75
391
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 9 02 2.7 4 03
CONTR OL B 0.06 5 0 LYM 180 1344 2.6 A 0.00 4 2.39E03 78
LYM 122 13711. 3 C 0.94 7 0.00E +00 73.9 LYM52 1289 4.6 A 0.00 4 3.08E03 50
LYM161 13233. 6 C 1.00 1 0.00E +00 83.9 LYM157 1334 1.1 A 0.00 7 3.26E03 182
LYM 189 13315. 1 C 1.28 1 0.00E +00 135.3 LYM79 1313 1.6 A 0.00 6 3.45E03 146
LYM 189 13315. 2 C 1.27 8 0.00E +00 134.6 LYM213 1284 2.8 A 0.00 9 5.95E03 260
LYM 189 13311. 2 C 1.04 3 0.00E +00 91.5 LYM157 1334 1.3 A 0.01 3 6.38E03 420
LYM219 13332. 9 C 1.16 9 0.00E +00 114.6 LYM 120 1338 2.2 A 0.00 7 1.08E02 192
LYM234 14092. 5 C 1.19 6 0.00E +00 119.5 LYM213 1284 2.9 A 0.00 8 1.10E02 235
LYM240 12683. 5 C 1.11 4 0.00E +00 104.6 LYM117 1362 4.7 A 0.00 4 1.29E02 59
LYM240 12682. 1 C 1.05 3 0.00E +00 93.4 LYM79 1313 2.6 A 0.00 4 1.41E02 64
LYM274 13413. 4 C 1.20 5 0.00E +00 121.3 LYM52 1289 5.7 A 0.00 9 1.45E02 262
LYM274 13415. 2 C 1.10 8 0.00E +00 103.4 LYM 107 1263 1.1 A 0.00 7 1.50E02 189
LYM32 13964. 1 c 1.00 1 0.00E +00 83.9 LYM 120 1338 2.8 A 0.00 7 1.53E02 160
LYM74 13954. 1 c 1.34 6 0.00E +00 147.2 LYM 120 1338 2.1 A 0.00 6 1.71E02 157
LYM74 13954. 2 c 1.13 3 0.00E +00 108.1 LYM213 1284 1.8 A 0.00 5 1.96E02 114
LYM79 13132. 2 c 1.06 6 0.00E +00 95.8 LYM227 1454 2.1 A 0.00 4 2.27E02 43
LYM79 13134. 1 c 1.01 8 0.00E +00 86.9 LYM 120 1338 2.3 A 0.00 8 2.67E02 225
LYM217 13181. 6 c 0.97 4 1.00E06 78.9 LYM52 1289 4.7 A 0.01 1 3.21E02 334
LYM245 13061. 8 c 0.94 9 1.00E06 74.3 LYM227 1454 4.2 A 0.00 4 3.26E02 53
LYM32 13963. 4 c 0.94 9 2.00E06 74.3 LYM52 1289 4.8 A 0.00 5 3.45E02 88
LYM188 13244. 4 c 0.90 7 3.00E06 66.6 LYM 180 1344 1.7 A 0.00 9 3.65E02 259
LYM 189 13311. 3 c 0.92 3 3.00E06 69.5 LYM248 1350 3.5 A 0.00 4 3.65E02 75
LYM234 14091. 1 c 0.98 1 1.40E05 80.1 LYM213 1284 1.6 A 0.00 6 3.85E02 125
LYM217 13186. 1 c 0.88 9 1.90E05 63.3 LYM 107 1263 3.4 A 0.00 4 3.86E02 71
LYM234 14092. 8 c 0.95 7 1.90E05 75.7 LYM117 1362 2.6 A 0.00 4 3.99E02 51
LYM234 14093. 2 c 0.87 2 3.90E05 60.1 LYM227 1454 2.3 A 0.00 3 4.02E02 37
392
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM79 13133. 2 C 0.90 3 5.00E05 65.8 LYM227 1454 2.5 A 0.00 3 4.55E02 32
LYM74 13952. 2 c 0.95 1.17E04 74.4 LYM 120 1338 2.4 A 0.00 4 4.58E02 59
LYM161 13233. 5 c 0.79 3 3.92E04 45.6 LYM248 1350 4.6 A 0.00 3 4.71E02 29
LYM274 13413. 1 c 0.91 9 7.62E04 68.8 LYM52 1289 1.8 A 0.00 4 5.01E02 62
LYM219 13331. 1 c 0.78 8 2.74E03 44.8 LYM79 1313 1.5 A 0.00 4 5.09E02 54
LYM79 13131. 1 c 0.82 5 3.08E03 51.6 LYM 107 1263 2.1 A 0.00 4 5.18E02 55
LYM240 12683. 9 c 0.75 3 3.59E03 38.2 LYM248 1350 2.7 A 0.00 3 5.65E02 27
LYM188 13244. 7 c 0.76 7 4.32E03 40.8 LYM117 1362 3.9 A 0.00 4 5.72E02 63
LYM161 13234. 6 c 0.77 1 5.36E03 41.5 LYM157 1334 2.4 A 0.00 3 6.07E02 30
LYM79 13133. 3 c 0.76 5 9.03E03 40.4 LYM117 1362 1.8 A 0.00 4 6.42E02 41
LYM 189 13314. 4 c 0.75 9.65E03 37.7 LYM 180 1344 1.5 A 0.00 7 9.29E02 178
LYM273 13721. 3 c 0.70 6 2.08E02 29.7 CONTR OL A 0.00 3 0
LYM79 13134. 3 c 0.70 8 2.18E02 30 LYM79 1313 2.6 B 0.09 7 0.00E +00 57
LYM188 13244. 6 c 0.67 6 6.45E02 24.2 LYM248 1350 2.6 B 0.08 4 3.80E05 36.3
LYM234 14092. 1 c 0.66 8.67E02 21.2 LYM52 1289 4.6 B 0.07 7 1.17E03 24.1
LYM32 13963. 1 c 0.68 6 9.24E02 26 LYM 120 1338 2.8 B 0.14 3 1.23E03 130.6
CONTR OL c 0.54 5 0 LYM213 1284 2.8 B 0.19 7 1.73E03 218
LYM32 13964. 1 D 8.65 1 0.00E +00 79.9 LYM157 1334 1.4 B 0.11 7 3.42E03 88.4
LYM219 13332. 9 D 10.4 91 1.00E05 118.2 LYM227 1454 4.2 B 0.09 3 4.06E03 50.6
LYM 122 13711. 3 D 8.61 1 5.80E05 79.1 LYM 120 1338 2.2 B 0.16 4 4.26E03 164.9
LYM161 13233. 5 D 7.32 6 1.20E04 52.3 LYM 107 1263 3.4 B 0.10 2 4.42E03 65.5
LYM188 13244. 4 D 8.09 7 2.06E04 68.4 LYM52 1289 5.7 B 0.18 5 4.74E03 198.5
LYM234 14092. 5 D 10.5 4 7.64E04 119.2 LYM117 1362 1.8 B 0.08 3 5.00E03 33.8
LYM79 13132. 2 D 9.36 3.54E03 94.6 LYM 180 1344 2.6 B 0.09 5 5.31E03 53.8
LYM74 13954. 2 D 9.85 5 5.72E03 104.9 LYM 107 1263 1.1 B 0.18 2 5.88E03 193.5
LYM 189 13315. 2 D 10.9 46 5.76E03 127.6 LYM248 1350 4.6 B 0.08 6.04E03 29.8
LYM74 13954. D 11.9 6.16E- 149.1 LYM157 1334 B 0.17 6.92E- 183.8
393
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
1 81 03 1.1 6 03
LYM274 13413. 4 D 10.3 17 7.08E03 114.5 LYM157 1334 1.3 B 0.28 9 8.30E03 367.8
LYM161 13233. 6 D 8.86 9 8.43E03 84.4 LYM 120 1338 2.4 B 0.08 7 8.44E03 41.4
LYM274 13415. 2 D 9.62 3 8.58E03 100.1 LYM79 1313 1.6 B 0.15 3 9.73E03 146.6
LYM245 13061. 8 D 8.36 8 8.65E03 74 LYM117 1362 2.5 B 0.08 9 1.06E02 44
LYM 189 13315. 1 D 11.2 93 1.02E02 134.8 LYM157 1334 2.4 B 0.09 2 1.14E02 49
LYM234 14093. 2 D 7.63 2 1.08E02 58.7 LYM 120 1338 2.3 B 0.18 9 1.26E02 205.1
LYM240 12683. 9 D 6.76 1 1.26E02 40.6 LYM52 1289 1.8 B 0.09 9 1.29E02 60.4
LYM 189 13311. 3 D 8.14 9 1.49E- 02 69.5 LYM227 1454 1.5 B 0.08 6 1.29E- 02 39.2
LYM79 13134. 1 D 9.34 7 1.65E02 94.4 LYM213 1284 2.9 B 0.18 3 1.30E02 195.5
LYM32 13963. 4 D 8.28 8 1.66E02 72.4 LYM 180 1344 1.7 B 0.20 3 1.33E02 227.8
LYM240 12682. 1 D 9.74 7 1.72E02 102.7 LYM 120 1338 2.1 B 0.14 9 1.38E02 140.6
LYM 189 13311. 2 D 8.99 1.94E02 87 LYM213 1284 1.6 B 0.12 5 1.59E02 102.2
LYM79 13134. 3 D 6.43 1 1.94E02 33.7 LYM 180 1344 2.7 B 0.10 2 2.04E02 64.6
LYM217 13186. 1 D 7.5 1.95E02 56 LYM52 1289 4.7 B 0.23 7 2.09E02 282.8
LYM217 13181. 6 D 8.44 3 1.96E02 75.6 LYM117 1362 2.6 B 0.09 5 2.67E02 53.3
LYM273 13721. 3 D 6.13 2 3.30E02 27.5 LYM213 1284 1.8 B 0.11 8 2.79E02 91.6
LYM234 14092. 1 D 5.87 8 3.41E- 02 22.2 LYM248 1350 3.5 B 0.1 2.95E02 62
LYM240 12683. 5 D 9.95 7 3.82E02 107.1 LYM227 1454 2.1 B 0.09 6 4.16E02 55.3
LYM79 13133. 2 D 8.25 2 4.16E02 71.6 LYM213 1284 1.5 B 0.08 9 4.72E02 43.5
LYM234 14091. 1 D 8.58 6 5.33E02 78.5 LYM117 1362 3.9 B 0.08 9 4.77E02 44.2
LYM234 14092. 8 D 8.37 3 5.62E02 74.1 LYM248 1350 2.7 B 0.07 6 5.33E02 23.7
LYM161 13234. 6 D 7.15 7.26E02 48.7 LYM 107 1263 2.1 B 0.09 8 6.41E- 02 57.9
LYM219 13331. 1 D 7.09 6 7.41E- 02 47.6 LYM 180 1344 1.5 B 0.16 2 6.47E02 162.6
LYM188 13244. 7 D 6.69 8.77E02 39.1 LYM227 1454 2.5 B 0.07 1 7.28E02 15.4
CONTR OL D 4.80 9 0 LYM52 1289 4.8 B 0.11 1 7.53E02 79.6
LYM 189 13315. 2 E 0.66 2 3.29E03 29.1 LYM117 1362 4.7 B 0.08 2 7.84E02 33
394
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM274 13413. 4 E 0.64 6 1.08E02 26.1 LYM248 1350 1.6 B 0.07 7 8.28E02 24.4
LYM189 13315. 1 E 0.64 1 1.59E02 25 CONTR OL B 0.06 2 0
LYM219 13332. 9 E 0.61 3 4.07E02 19.6 LYM107 1263 1.1 C 0.83 1 0.00E +00 94.2
LYM161 13233. 6 E 0.60 2 7.90E02 17.4 LYM120 1338 2.3 C 1.03 8 0.00E +00 142.4
LYM32 13964. 1 E 0.6 7.97E02 17 LYM157 1334 1.3 C 1.14 1 0.00E +00 166.5
CONTR OL E 0.51 3 0 LYM157 1334 1.4 C 0.91 8 0.00E +00 114.5
LYM219 13332. 9 F 7.58 6 1.00E06 29 LYM213 1284 2.8 C 1.03 5 0.00E +00 141.7
LYM32 13964. 1 F 6.96 2 7.00E06 18.4 LYM52 1289 4.7 C 0.8 0.00E +00 86.9
LYM240 12682. 1 F 6.84 3 3.90E05 16.4 LYM213 1284 2.9 C 0.76 2 1.00E06 77.9
LYM74 13954. 1 F 7.08 5 4.60E05 20.5 LYM120 1338 2.2 C 0.82 8 6.00E06 93.3
LYM79 13134. 1 F 7.2 1.08E03 22.5 LYM248 1350 3.5 C 0.74 1 6.00E06 73
LYM274 13413. 4 F 7.26 2 1.40E03 23.5 LYM52 1289 5.7 C 0.72 4 2.50E05 69.1
LYM79 13132. 2 F 6.66 2 1.94E- 03 13.3 LYM213 1284 1.6 C 0.7 3.20E05 63.5
LYM189 13315. 2 F 7.59 1 1.99E03 29.1 LYM120 1338 2.1 C 0.69 5 6.10E- 05 62.3
LYM234 14092. 5 F 7.11 7 2.84E03 21.1 LYM180 1344 1.7 C 0.76 3 8.30E05 78.3
LYM189 13315. 1 F 7.39 6 2.91E03 25.8 LYM180 1344 2.7 C 0.67 5 1.83E04 57.6
LYM74 13954. 2 F 7.08 9 5.06E03 20.6 LYM79 1313 1.5 C 0.68 2.64E04 58.9
LYM161 13233. 6 F 6.97 8 1.61E02 18.7 LYM157 1334 1.1 C 0.66 6 5.55E04 55.6
LYM161 13233. 5 F 6.50 2 2.85E02 10.6 LYM117 1362 1.8 C 0.65 9 8.30E04 53.8
LYM122 13711. 3 F 6.64 3 3.74E02 13 LYM79 1313 1.6 C 0.65 9 1.51E03 53.9
LYM240 12683. 5 F 6.97 8 4.00E02 18.7 LYM52 1289 4.8 C 0.67 1.78E03 56.5
LYM79 13134. 3 F 6.40 3 5.79E02 8.9 LYM52 1289 1.8 c 0.62 4 1.88E03 45.8
LYM274 13415. 2 F 6.39 6.01E- 02 8.7 LYM227 1454 2.3 c 0.64 7 2.21E03 51.2
LYM245 13061. 8 F 6.36 6 7.89E02 8.3 LYM157 1334 2.4 c 0.61 6 4.48E03 43.8
LYM217 13181. 6 F 6.76 6 8.26E02 15.1 LYM79 1313 2.6 c 0.60 5 4.76E03 41.3
CONTR OL F 5.87 9 0 LYM120 1338 2.8 c 0.60 7 5.79E03 41.7
LYM189 13315. G 1.28 1.90E- 167.8 LYM180 1344 c 0.61 8.13E- 42.7
395
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 4 05 1.5 1 03
LYM217 13183. 2 G 0.97 3 4.10E05 103 LYM117 1362 2.6 C 0.59 3 8.16E03 38.5
LYM74 13954. 2 G 0.93 1 6.30E05 94.1 LYM248 1350 1.6 c 0.60 4 8.30E03 41.1
LYM234 14092. 5 G 1.20 4 1.92E04 151.1 LYM213 1284 1.5 c 0.59 4 9.39E03 38.7
LYM122 13711. 3 G 1.15 9 3.08E04 141.7 LYM227 1454 4.2 c 0.59 3 1.48E02 38.6
LYM240 12683. 5 G 1.04 2 7.28E04 117.2 LYM107 1263 1.2 c 0.58 8 1.80E02 37.4
LYM79 13134. 3 G 0.80 8 1.09E03 68.5 LYM117 1362 2.5 c 0.60 4 1.90E02 41
LYM245 13061. 8 G 1.27 1 1.20E03 165.1 LYM107 1263 3.4 c 0.56 4 2.80E02 31.8
LYM79 13132. 2 G 1.32 I.33E03 175.3 LYM52 1289 4.6 c 0.54 8 4.99E02 27.9
LYM234 14093. 2 G 0.94 3 1.41E03 96.7 LYM79 1313 4.7 c 0.53 6 7.39E02 25.2
LYM74 13954. 1 G 1.31 3 1.81E03 173.7 CONTR OL c 0.42 8 0
LYM217 13186. 1 G 0.91 1 1.88E03 90.1 LYM157 1334 1.4 D 8.10 1 0.00E +00 121.4
LYM32 13963. 1 G 0.66 5 2.56E03 38.7 LYM213 1284 2.9 D 6.77 7 1.47E04 85.2
LYM161 13233. 6 G 1.06 4 2.90E03 121.9 LYM213 1284 1.6 D 6.03 9 2.00E04 65
LYM217 13182. 1 G 1.08 3 3.10E03 125.8 LYM52 1289 4.7 D 7.31 4 8.85E04 99.9
LYM219 13332. 9 G 1.06 3 4.10E03 121.8 LYM117 1362 2.6 D 5.11 3 1.50E03 39.7
LYM161 13233. 5 G 1.09 9 4.42E03 129.2 LYM107 1263 1.1 D 7.34 6 1.55E03 100.8
LYM274 13415. 2 G 1.15 4.92E03 139.8 LYM180 1344 2.7 D 6.26 6 1.64E03 71.2
LYM274 13413. 4 G 0.89 9 6.80E03 87.4 LYM120 1338 2.1 D 6.10 3 2.38E03 66.8
LYM189 13315. 1 G 1.43 7 7.49E03 199.8 LYM157 1334 1.3 D 9.88 6 2.61E03 170.2
LYM189 13311. 2 G 1.02 9 7.55E03 114.6 LYM52 1289 1.8 D 5.27 9 3.81E03 44.3
LYM32 13964. 1 G 0.84 4 7.69E03 76 LYM248 1350 3.5 D 6.50 1 4.31E03 77.7
LYM79 13134. 1 G 0.99 1.05E02 106.5 LYM107 1263 3.4 D 5.08 1 6.28E03 38.9
LYM234 14091. 1 G 0.91 9 1.09E02 91.6 LYM79 1313 2.6 D 5.27 2 7.18E03 44.1
LYM188 13244. 4 G 1.04 9 1.17E02 118.7 LYM79 1313 4.7 D 4.84 4 7.92E03 32.4
LYM217 13181. 9 G 0.77 5 1.18E02 61.6 LYM79 1313 1.5 D 5.96 1 1.41E02 62.9
LYM240 12683. 9 G 0.57 9 1.27E02 20.7 LYM52 1289 5.7 D 6.30 2 1.43E02 72.2
396
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM189 13311. 3 G 0.98 1.37E02 104.4 LYM157 1334 1.1 D 6.12 7 1.48E02 67.4
LYM278 13364. 5 G 0.57 4 1.37E02 19.7 LYM213 1284 2.8 D 9.74 5 1.57E02 166.3
LYM240 12682. 1 G 1.13 2 1.51E02 136.1 LYM157 1334 2.4 D 5.41 8 1.58E02 48.1
LYM79 13133. 3 G 0.97 4 1.51E02 103.1 LYM120 1338 2.8 D 5.23 3 2.06E02 43
LYM234 14092. 8 G 1.15 2.17E02 139.7 LYM120 1338 2.3 D 9.17 2 3.14E02 150.7
LYM188 13244. 6 G 0.58 2.18E02 20.9 LYM213 1284 1.5 D 5.04 4 3.32E02 37.9
LYM79 13134. 2 G 0.62 2 2.53E02 29.6 LYM117 1362 1.8 D 5.51 3 4.02E02 50.7
LYM32 13963. 4 G 0.96 7 2.55E02 101.8 LYM120 1338 2.2 D 7.20 7 4.05E02 97
LYM79 13133. 2 G 0.95 2.59E02 98 LYM79 1313 3.6 D 4.40 4 4.15E02 20.4
LYM189 13314. 5 G 0.60 4 2.68E02 26 LYM52 1289 4.6 D 4.63 7 4.35E02 26.7
LYM161 13234. 6 G 0.98 9 2.76E02 106.3 LYM248 1350 1.6 D 5.17 8 5.20E02 41.5
LYM74 13952. 2 G 0.83 7 3.56E02 74.5 LYM180 1344 1.5 D 5.62 1 5.27E02 53.6
LYM189 13314. 4 G 0.80 3 3.63E02 67.4 LYM180 1344 1.7 D 6.61 6 5.74E02 80.8
LYM274 13413. 1 G 0.82 3 4.32E02 71.6 LYM79 1313 1.6 D 5.67 2 6.56E02 55
LYM79 13131. 1 G 0.94 1 5.88E02 96.2 LYM227 1454 2.3 D 5.39 8 8.39E02 47.5
LYM188 13244. 7 G 0.74 1 6.09E02 54.5 CONTR OL D 3.65 9 0
LYM234 14092. 1 G 0.61 6 6.23E02 28.6 LYM157 1334 1.3 E 0.56 3 8.32E03 39.2
LYM219 13331. 1 G 0.77 8 8.27E02 62.3 LYM248 1350 3.5 E 0.54 4 1.60E02 34.6
CONTR OL G 0.48 0 LYM248 1350 1.6 E 0.53 1 2.70E02 31.5
LYM122 13711. 3 H 0.12 1 0.00E +00 155.6 LYM120 1338 2.2 E 0.52 2 4.43E02 29.2
LYM161 13233. 6 H 0.11 2 0.00E +00 136 LYM120 1338 2.3 E 0.52 3 6.14E02 29.4
LYM161 13233. 5 H 0.11 0.00E +00 133.1 LYM107 1263 1.1 E 0.51 1 6.15E02 26.4
LYM161 13234. 6 H 0.10 5 0.00E +00 122 LYM120 1338 2.8 E 0.51 1 6.32E02 26.4
LYM188 13244. 4 H 0.10 5 0.00E +00 121.6 LYM52 1289 1.8 E 0.49 8 9.65E02 23.4
LYM189 13315. 1 H 0.14 6 0.00E +00 207.9 CONTR OL E 0.40 4 0
LYM189 13315. 2 H 0.13 3 0.00E +00 181.1 LYM107 1263 1.1 F 6.51 7 0.00E +00 32.4
LYM189 13311. H 0.10 0.00E 123.6 LYM157 1334 F 6.66 0.00E 35.4
397
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 6 +00 1.4 3 +00
LYM 189 13311. 3 H 0.09 9 0.00E +00 109.8 LYM79 1313 1.5 F 6.65 8 2.30E05 35.3
LYM217 13182. 1 H 0.11 7 0.00E +00 146.7 LYM79 1313 2.6 F 6.26 9 6.80E05 27.4
LYM217 13183. 2 H 0.09 6 0.00E +00 102.8 LYM248 1350 3.5 F 6.84 9 7.40E05 39.1
LYM217 13186. 1 H 0.09 0.00E +00 91 LYM 107 1263 3.4 F 6.42 1.94E04 30.4
LYM219 13332. 9 H 0.11 0.00E +00 132.5 LYM248 1350 1.6 F 6.55 2.54E04 33.1
LYM234 14092. 5 H 0.12 3 0.00E +00 160.3 LYM213 1284 2.8 F 7.02 9 2.62E04 42.8
LYM234 14092. 8 H 0.11 9 0.00E +00 151.6 LYM 180 1344 2.7 F 6.27 4 3.41E04 27.5
LYM234 14093. 2 H 0.10 1 0.00E +00 113.6 LYM213 1284 2.9 F 6.02 8 4.41E04 22.4
LYM234 14091. 1 H 0.09 4 0.00E +00 98.2 LYM213 1284 1.6 F 5.83 6 5.41E04 18.6
LYM240 12683. 5 H 0.10 9 0.00E +00 130.7 LYM 120 1338 2.2 F 6.34 5 1.79E03 28.9
LYM240 12682. 1 H 0.10 9 0.00E +00 130 LYM157 1334 1.1 F 5.67 7 2.64E03 15.3
LYM245 13061. 8 H 0.12 8 0.00E +00 170.9 LYM157 1334 1.3 F 6.75 2 3.09E03 37.2
LYM274 13415. 2 H 0.11 9 0.00E +00 152.5 LYM 180 1344 1.7 F 5.93 5 3.68E03 20.6
LYM274 13413. 4 H 0.09 5 0.00E +00 101.8 LYM 180 1344 1.5 F 6.07 1 4.41E03 23.3
LYM274 13413. 1 H 0.08 7 0.00E +00 84.2 LYM52 1289 4.7 F 6.00 8 5.17E03 22.1
LYM32 13963. 4 H 0.10 2 0.00E +00 116.1 LYM 120 1338 2.3 F 6.67 4 8.09E03 35.6
LYM32 13964. 1 H 0.08 9 0.00E +00 87.8 LYM52 1289 1.8 F 5.77 4 9.79E03 17.3
LYM74 13954. 1 H 0.12 8 0.00E +00 171.4 LYM79 1313 4.7 F 5.60 1 1.44E02 13.8
LYM74 13954. 2 H 0.09 3 0.00E +00 96.9 LYM227 1454 2.3 F 5.91 1.57E02 20.1
LYM79 13132. 2 H 0.13 4 0.00E +00 183.6 LYM79 1313 3.6 F 5.77 8 2.12E02 17.4
LYM79 13133. 3 H 0.10 1 0.00E +00 114.2 LYM 107 1263 1.2 F 5.76 4 2.69E02 17.1
LYM79 13134. 1 H 0.1 0.00E +00 111.5 LYM 120 1338 2.1 F 5.44 8 2.96E02 10.7
LYM79 13133. 2 H 0.09 7 0.00E +00 104.7 LYM117 1362 1.8 F 5.54 1 3.11E02 12.6
LYM79 13134. 3 H 0.08 2 0.00E +00 73.1 LYM117 1362 2.6 F 5.57 8 3.16E02 13.3
LYM 189 13314. 4 H 0.08 3 1.00E06 75.5 LYM157 1334 2.4 F 5.90 6 4.04E02 20
LYM74 13952. 2 H 0.08 5 1.00E06 80.6 LYM52 1289 4.6 F 5.68 6 5.87E02 15.5
398
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM79 13131. 1 H 0.09 7 1.00E06 104.4 LYM157 1334 1.1 F 5.64 7 6.06E02 14.7
LYM219 13331. 1 H 0.08 2 1.20E05 73.8 LYM120 1338 2.8 F 5.59 7 7.48E02 13.7
LYM188 13244. 7 H 0.07 9 1.40E05 66.2 LYM248 1350 2.7 F 5.61 7 7.50E02 14.1
LYM217 13181. 9 H 0.07 1 7.40E05 50 CONTR OL F 4.92 3 0
LYM219 13334. 8 H 0.07 5 4.81E04 59.2 LYM79 1313 4.7 G 0.78 3 0.00E +00 69
LYM32 13963. 1 H 0.06 4 1.00E03 34.7 LYM120 1338 2.8 G 0.93 7 6.00E06 102.4
LYM273 13721. 3 H 0.06 7 1.42E03 40.7 LYM180 1344 2.6 G 0.70 8 1.72E04 52.9
LYM189 13314. 5 H 0.06 3 1.80E03 33.5 LYM79 1313 2.6 G 0.63 5 2.20E04 37.1
LYM234 14092. 1 H 0.06 4 2.49E03 34.5 LYM248 1350 2.6 G 0.6 3.71E04 29.4
LYM217 13181. 6 H 0.06 7 2.63E03 41 LYM227 1454 4.2 G 0.61 2 4.69E04 32
LYM188 13244. 6 H 0.06 2 3.19E03 30.8 LYM107 1263 3.4 G 0.69 5 6.12E04 50.1
LYM219 13334. 7 H 0.06 5 6.05E03 37.1 LYM120 1338 2.1 G 1.05 6 8.03E04 128
LYM79 13134. 2 H 0.06 1 6.73E03 28.6 LYM227 1454 2.1 G 0.62 5 8.16E04 34.9
LYM240 12683. 9 H 0.05 9 1.03E02 25.6 LYM117 1362 2.6 G 0.67 8 8.66E04 46.3
LYM122 13713. 4 H 0.06 1 1.40E02 29.1 LYM157 1334 1.1 G 1.03 8 1.08E03 124.2
LYM278 13364. 5 H 0.05 8 2.02E02 23.2 LYM157 1334 1.4 G 0.73 7 1.15E03 59.1
LYM274 13413. 3 H 0.06 2.07E02 27.2 LYM157 1334 1.3 G 1.52 8 1.56E03 229.9
LYM240 12684. 8 H 0.05 9 5.27E02 24.1 LYM120 1338 2.2 G 1.05 7 1.65E03 128.2
CONTR OL H 0.04 7 0 LYM107 1263 1.1 G 1.08 5 2.28E03 134.2
LYM1 11603. 2 A 0.00 6 2.00E06 74.1 LYM227 1454 1.5 G 0.61 2.98E03 31.8
LYM1 11601. 1 A 0.00 7 1.20E05 83.9 LYM120 1338 2.4 G 0.61 4 4.29E03 32.6
LYM132 12275. 3 A 0.00 7 1.63E04 96.5 LYM213 1284 2.8 G 1.20 5 4.34E03 160.1
LYM178 12164. 2 A 0.00 6 2.14E03 58 LYM248 1350 3.5 G 0.75 1 4.94E03 62.2
LYM132 12271. 4 A 0.00 7 3.64E03 97.2 LYM180 1344 2.7 G 0.83 9 5.84E03 81.2
LYM1 11604. 4 A 0.00 5 3.68E03 29.4 LYM52 1289 5.7 G 1.04 4 6.49E03 125.4
LYM268 12483. 2 A 0.00 8 6.62E03 111.2 LYM157 1334 2.4 G 0.60 9 6.86E03 31.5
LYM5 12432. A 0.00 6.64E- 28.7 LYM180 1344 G 1.02 7.31E- 121.8
399
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 5 03 1.5 7 03
LYM178 12164. 3 A 0.01 1 1.01E02 206.3 LYM213 1284 1.8 G 0.73 2 7.99E03 58
LYM134 12314. 2 A 0.00 6 1.05E02 77.6 LYM120 1338 2.3 G 1.09 9 8.19E- 03 137.3
LYM268 12482. 3 A 0.00 6 1.08E02 58.7 LYM52 1289 4.7 G 1.15 3 8.28E03 148.8
LYM129 12571. 3 A 0.00 6 1.11E02 54.5 LYM213 1284 2.9 G 1.14 3 8.30E03 146.8
LYM178 12163. 3 A 0.01 1 1.16E02 202.1 LYM79 1313 1.6 G 1.11 8.39E03 139.7
LYM1 11602. 6 A 0.01 1 1.60E02 197.2 LYM180 1344 1.7 G 1.22 4 1.13E02 164.3
LYM1 11602. 1 A 0.00 5 1.79E02 46.2 LYM157 1334 1.1 G 0.52 7 1.68E02 13.9
LYM268 12482. 1 A 0.00 7 2.35E02 97.9 LYM227 1454 2.5 G 0.56 9 1.84E- 02 22.7
LYM132 12276. 1 A 0.00 9 2.60E02 146.9 LYM52 1289 4.6 G 0.52 5 1.93E02 13.4
LYM129 12572. 2 A 0.00 5 2.65E02 46.2 LYM52 1289 1.8 G 0.67 1 2.02E02 44.8
LYM5 12432. 1 A 0.00 6 4.79E02 70.6 LYM117 1362 1.8 G 0.57 2.22E02 23
LYM6 11735. 1 A 0.00 6 5.37E02 58 LYM213 1284 1.6 G 0.78 2 2.30E02 68.9
LYM132 12273. 2 A 0.00 5 5.62E02 44.1 LYM107 1263 2.1 G 0.64 8 2.97E02 39.9
LYM268 12483. 4 A 0.00 6 6.34E02 65 LYM117 1362 3.9 G 0.67 7 4.19E02 46
LYM6 11736. 1 A 0.00 6 6.64E02 71.3 LYM117 1362 4.7 G 0.69 5 5.21E- 02 49.9
LYM6 11733. 2 A 0.00 4 6.75E02 13.3 LYM117 1362 2.5 G 0.63 4 5.88E02 36.9
LYM6 11735. 2 A 0.00 5 6.93E02 49 LYM52 1289 4.8 G 0.73 6.31E02 57.5
LYM134 12313. 2 A 0.01 1 7.63E02 216.1 LYM79 1313 1.5 G 0.65 4 7.90E02 41.2
LYM129 12573. 5 A 0.00 7 7.95E02 102.8 CONTR OL G 0.46 3 0
CONTR OL A 0.00 4 0 LYM107 1263 1.1 H 0.10 7 0.00E +00 141.1
LYM132 12275. 3 B 0.13 4 1.00E- 06 86.1 LYM120 1338 2.3 H 0.11 1 0.00E +00 148.8
LYM1 11603. 2 B 0.12 4 3.20E05 72.1 LYM120 1338 2.2 H 0.10 7 0.00E +00 139.8
LYM1 11601. 1 B 0.12 3 4.10E05 71.4 LYM120 1338 2.1 H 0.10 2 0.00E +00 129.7
LYM132 12271. 4 B 0.12 4 1.69E- 04 71.8 LYM120 1338 2.8 H 0.09 4 0.00E +00 111.3
LYM268 12483. 2 B 0.14 2 8.85E04 96.8 LYM157 1334 1.3 H 0.14 6 0.00E +00 228.5
LYM178 12164. 2 B 0.11 1 2.98E03 54.4 LYM157 1334 1.1 H 0.09 6 0.00E +00 117
400
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM5 12432. 2 B 0.09 6.77E03 25.1 LYM180 1344 1.7 H 0.11 4 0.00E +00 157.5
LYM134 12314. 2 B 0.13 8 7.76E03 91.2 LYM180 1344 1.5 H 0.09 7 0.00E +00 119.2
LYM129 12571. 3 B 0.11 9.48E03 52.8 LYM213 1284 2.8 H 0.11 4 0.00E +00 157
LYM1 11602. 6 B 0.21 4 9.84E03 197.7 LYM213 1284 2.9 H 0.10 7 0.00E +00 141.1
LYM268 12482. 3 B 0.12 4 1.45E02 71.8 LYM52 1289 4.7 H 0.11 7 0.00E +00 162.5
LYM268 12482. 1 B 0.12 9 1.64E02 78.6 LYM52 1289 5.7 H 0.10 5 0.00E +00 136
LYM129 12572. 2 B 0.10 1 1.69E02 40.1 LYM79 1313 1.6 H 0.10 8 0.00E +00 142.5
LYM129 12573. 3 B 0.08 7 1.94E02 21 LYM180 1344 2.7 H 0.08 1.00E06 79.4
LYM6 11735. 2 B 0.13 2.15E02 80.5 LYM157 1334 1.4 H 0.07 7 3.00E06 73.4
LYM178 12164. 3 B 0.21 5 2.21E02 199.1 LYM213 1284 1.6 H 0.07 7 1.70E05 74.3
LYM178 12163. 3 B 0.22 7 2.30E02 214.8 LYM79 1313 4.7 H 0.07 6.90E05 57.7
LYM5 12432. 1 B 0.11 6 2.54E02 60.7 LYM52 1289 4.8 H 0.07 5 1.89E04 67.6
LYM6 11735. 1 B 0.10 7 2.65E02 48.9 LYM227 1454 4.2 H 0.06 7 4.24E04 49.8
LYM132 12276. 1 B 0.18 2.72E02 150.1 LYM107 1263 3.4 H 0.06 6 5.81E04 48.6
LYM134 12313. 2 B 0.22 9 3.20E02 217.6 LYM117 1362 2.6 H 0.06 6 5.92E04 49
LYM268 12483. 4 B 0.12 8 4.11E02 77.8 LYM248 1350 3.5 H 0.06 7 7.50E04 50.7
LYM134 12312. 4 B 0.09 6 6.12E02 33.5 LYM213 1284 1.8 H 0.06 7 7.87E04 50.6
LYM129 12573. 5 B 0.14 4 6.28E02 99.7 LYM52 1289 1.8 H 0.06 7 9.77E04 49.6
LYM6 11736. 1 B 0.13 7.91E02 80.6 LYM117 1362 2.5 H 0.06 7 9.85E04 51.7
LYM1 11604. 4 B 0.08 3 9.90E02 16 LYM180 1344 2.6 H 0.06 5 1.09E03 45.8
CONTR OL B 0.07 2 0 LYM117 1362 3.9 H 0.06 4 3.89E03 44.7
LYM1 11602. 6 C 0.96 5 0.00E +00 91.4 LYM79 1313 2.6 H 0.06 2 5.30E03 38.5
LYM1 11601. 1 C 0.83 8.30E05 64.7 LYM107 1263 2.1 H 0.06 3 5.57E03 41.7
LYM268 12483. 2 C 0.80 3 1.01E04 59.3 LYM120 1338 2.4 H 0.06 1 5.57E03 38.2
LYM132 12276. 1 C 0.93 6 1.06E04 85.8 LYM117 1362 4.7 H 0.06 4 5.91E03 43.9
LYM178 12164. 3 C 0.83 1 1.49E04 64.9 LYM248 1350 2.6 H 0.06 9.80E03 35.3
LYM129 12571. C 0.79 1.72E- 57.5 LYM213 1284 H 0.06 1.07E- 39
401
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
3 4 04 1.5 2 02
LYM129 12573. 5 C 0.83 1.82E04 64.6 LYM227 1454 2.1 H 0.05 9 1.46E02 33.2
LYM268 12482. 3 c 0.75 2 4.97E04 49.2 LYM157 1334 2.4 H 0.06 1.46E02 34.4
LYM268 12483. 4 c 0.75 2 8.08E04 49.2 LYM117 1362 1.8 H 0.06 1.51E02 34.5
LYM178 12163. 3 c 0.84 9 8.09E04 68.5 LYM79 1313 1.5 H 0.06 2.75E02 35.8
LYM5 12435. 1 c 0.77 1 9.77E04 52.9 LYM227 1454 1.5 H 0.05 7 3.75E02 28.4
LYM134 12314. 2 c 0.73 3 1.55E03 45.5 CONTR OL H 0.04 4 0
LYM178 12164. 2 c 0.67 9 7.95E03 34.7 LYM79 1313 1.6 A 0.00 4 9.00E06 63
LYM134 12313. 2 c 0.73 9 8.31E03 46.6 LYM79 1313 3.6 A 0.00 4 1.55E03 61
LYM132 12275. 3 c 0.67 5 1.62E02 34 LYM79 1313 1.5 A 0.00 4 3.66E02 40
LYM1 11603. 2 c 0.68 3 3.61E02 35.6 LYM79 1313 2.6 A 0.00 4 3.91E02 47
CONTR OL c 0.50 4 0 LYM227 1454 4.2 A 0.00 4 5.01E02 72
LYM1 11602. 6 D 8.10 9 7.70E05 79.7 LYM79 1313 4.7 A 0.00 3 5.24E02 39
LYM268 12483. 2 D 6.77 9 9.34E04 50.3 LYM227 1454 2.5 A 0.00 3 7.71E02 35
LYM268 12482. 3 D 6.31 8 9.47E04 40 CONTR OL A 0.00 3 0
LYM129 12571. 3 D 6.58 7 1.03E03 46 LYM79 1313 3.6 B 0.08 9 3.95E03 23.5
LYM134 12314. 2 D 6.14 6 2.72E03 36.2 LYM227 1454 4.2 B 0.10 1 1.09E02 40.9
LYM1 11601. 1 D 7.07 4 6.19E03 56.8 LYM227 1454 2.1 B 0.08 2 5.43E02 14.7
LYM268 12483. 4 D 6.37 5 1.10E02 41.3 LYM79 1313 1.5 B 0.09 3 7.88E02 28.9
LYM178 12164. 2 D 5.68 1 1.80E02 25.9 LYM79 1313 2.6 B 0.09 5 8.38E02 32.4
LYM129 12573. 5 D 7.10 5 1.84E02 57.5 LYM227 1454 2.5 B 0.08 5 9.81E02 18.4
LYM178 12164. 3 D 6.94 1 1.87E02 53.8 CONTR OL B 0.07 2 0
LYM132 12276. 1 D 7.98 5 3.78E02 77 LYM79 1313 4.7 C 0.66 5 5.00E05 49.9
LYM5 12435. 1 D 6.43 3 4.32E02 42.6 LYM79 1313 2.6 C 0.68 3 1.75E04 53.9
LYM132 12275. 3 D 5.76 9 5.38E02 27.9 LYM227 1454 4.2 C 0.60 6 2.21E03 36.6
LYM178 12163. 3 D 7.17 1 6.48E02 59 LYM79 1313 3.6 C 0.61 4 5.09E03 38.3
CONTR OL D 4.51 1 0 LYM79 1313 1.5 C 0.60 6 6.01E03 36.5
402
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM178 12164. 3 E 0.61 8 6.14E04 35.8 LYM227 1454 2.5 C 0.58 9 9.41E03 32.9
LYM5 12435. 1 E 0.6 6.85E04 31.8 LYM79 1313 1.6 c 0.55 9 2.18E02 26
LYM134 12314. 2 E 0.59 8 1.04E03 31.5 LYM227 1454 2.3 c 0.57 6 2.31E02 29.9
LYM268 12482. 3 E 0.59 1.49E03 29.6 CONTR OL c 0.44 4 0
LYM129 12571. 3 E 0.59 6 1.76E03 31 LYM79 1313 4.7 D 5.69 8 4.00E06 47.8
LYM132 12276. 1 E 0.59 5 2.11E03 30.8 LYM79 1313 1.6 D 5.05 1 2.55E04 31
LYM1 11602. 6 E 0.58 4.57E03 27.6 LYM227 1454 4.2 D 5.17 6 7.52E03 34.3
LYM132 12275. 3 E 0.58 7 9.38E03 29 LYM79 1313 1.5 D 5.50 4 5.52E02 42.8
LYM178 12164. 2 E 0.55 7 1.30E02 22.5 LYM79 1313 2.6 D 5.91 1 5.61E02 53.3
LYM268 12483. 4 E 0.53 9 4.86E02 18.5 LYM227 1454 2.5 D 5.15 9 6.06E02 33.8
LYM178 12163. 3 E 0.55 3 5.88E02 21.4 LYM79 1313 3.6 D 5.42 9 8.59E02 40.9
LYM1 11601. 1 E 0.54 3 6.29E02 19.2 CONTR OL D 3.85 5 0
LYM129 12573. 5 E 0.54 8 7.27E02 20.4 LYM79 1313 4.7 F 6.19 1 5.25E04 18
LYM5 12432. 1 E 0.53 2 7.47E02 16.9 LYM79 1313 2.6 F 6.15 8 6.45E03 17.4
LYM129 12572. 2 E 0.52 7.70E02 14.4 LYM79 1313 1.5 F 6.28 6 7.80E03 19.8
CONTR OL E 0.45 5 0 LYM227 1454 2.3 F 5.86 3 7.80E02 11.7
LYM268 12482. 3 F 6.79 7 1.32E04 22.4 CONTR OL F 5.24 7 0
LYM5 12435. 1 F 6.56 6 5.75E04 18.2 LYM79 1313 1.6 G 0.75 6 8.17E03 48
LYM134 12314. 2 F 6.85 8 2.92E03 23.5 LYM227 1454 4.2 G 0.57 5 3.56E02 12.6
LYM132 12276. 1 F 6.96 8 4.43E03 25.4 CONTR OL G 0.51 1 0
LYM129 12571. 3 F 6.61 4 1.13E02 19.1 LYM79 1313 1.6 H 0.07 5 1.40E05 50.2
LYM178 12164. 3 F 6.68 5 1.23E02 20.3 LYM227 1454 4.2 H 0.06 2 1.36E02 24.5
LYM268 12483. 2 F 6.47 7 1.34E02 16.6 LYM79 1313 3.6 H 0.06 2 1.76E02 25.2
LYM268 12483. 4 F 6.49 4 1.43E02 16.9 LYM79 1313 1.5 H 0.06 4 2.54E02 28.1
LYM1 11602. 6 F 6.60 7 1.52E02 18.9 LYM227 1454 2.5 H 0.06 1 3.57E02 22.1
LYM1 11601. 1 F 6.59 5 2.97E02 18.7 LYM79 1313 4.7 H 0.05 9 6.68E02 19.2
LYM178 12164. F 6.10 4.81E- 9.9 LYM79 1313 H 0.05 8.94E- 18.9
403
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 6 02 2.6 9 02
LYM132 12275. 3 F 6.54 6 7.02E02 17.8 CONTR OL H 0.05 0
LYMl 29 12573. 5 F 6.54 4 9.24E02 17.8
CONTR OL F 5.55 5 0
LYMl 11601. 1 G 0.75 8.00E06 56.3
LYM132 12271. 4 G 0.76 1.00E- 05 58.3
LYM132 12275. 3 G 0.84 1 4.10E05 75.2
LYM268 12482. 1 G 0.73 8 2.75E04 53.6
LYM178 12164. 3 G 1.03 1 1.85E- 03 114.7
LYMl 11603. 2 G 0.66 5 1.89E- 03 38.5
LYM134 12314. 2 G 0.75 9 2.43E03 58.1
LYMl 11602. 6 G 1.00 2 3.24E03 108.6
LYM178 12164. 2 G 0.61 5 7.36E03 28
LYM178 12163. 3 G 0.92 9 1.03E02 93.6
LYM132 12276. 1 G 0.83 3 1.10E02 73.5
LYM6 11736. 1 G 0.75 1.25E02 56.2
LYMl 29 12573. 5 G 0.78 6 2.28E02 63.6
LYM268 12483. 2 G 0.72 8 2.44E02 51.6
LYM6 11735. 2 G 0.59 4 2.79E02 23.7
LYM268 12482. 3 G 0.63 3.55E02 31.3
LYM5 12432. 1 G 0.74 1 3.96E02 54.3
LYMl 29 12572. 2 G 0.59 8 4.01E02 24.5
LYMl 11602. 1 G 0.58 8 5.84E02 22.4
LYM268 12483. 4 G 0.70 8 6.03E02 47.5
LYM134 12313. 2 G 0.96 8 6.92E02 101.5
CONTR OL G 0.48 0
LYM136 13423. 1 A 0.00 6 4.00E06 156.7 LYMl 60 1347 2.1 A 0.01 0.00E +00 138.8
404
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYMl 11601. 1 A 0.00 4 2.49E04 69.1 LYM136 1342 3.4 A 0.00 9 1.48E- 04 118.5
LYM136 13421. 5 A 0.00 6 1.77E03 129.9 LYM293 1339 1.2 A 0.00 7 5.51E- 03 57.6
LYM84 13404. 4 A 0.00 4 3.79E03 81.4 LYM293 1339 1.4 A 0.00 9 8.63E03 106
LYMl 11602. 6 A 0.00 7 5.63E03 182.5 LYM136 1342 1.7 A 0.00 8 1.58E02 94
LYMl 11603. 2 A 0.00 5 7.42E03 125.8 LYM136 1342 1.8 A 0.00 8 2.02E02 92.2
LYM84 13401. 2 A 0.00 5 1.15E- 02 91.8 LYMl 60 1347 1.1 A 0.00 8 3.06E02 95.2
LYM84 13403. 1 A 0.00 7 1.33E02 170.1 LYM84 1340 3.1 A 0.00 8 3.34E02 90.4
LYM84 13403. 3 A 0.00 5 1.48E02 99 LYMl 60 1347 2.2 A 0.00 7 3.80E02 78.5
LYM136 13421. 6 A 0.00 5 2.79E02 116.5 LYM84 1340 3.3 A 0.01 2 6.33E02 186
LYM136 13421. 8 A 0.00 7 2.82E02 189.7 LYM293 1339 2.2 A 0.00 7 6.99E02 70.1
LYM84 13403. 2 A 0.00 6 2.92E02 156.7 LYM84 1340 1.2 A 0.00 7 7.32E02 66.6
LYMl 11602. 1 A 0.00 4 3.31E- 02 70.1 LYM293 1339 1.9 A 0.00 7 7.86E02 67.8
LYM136 13423. 2 A 0.00 4 3.85E02 79.4 LYM136 1342 1.5 A 0.00 8 8.34E02 99.4
LYMl 11604. 4 A 0.00 3 5.00E02 39.2 LYMl 60 1347 1.4 A 0.00 6 9.24E02 31.3
CONTR OL A 0.00 2 0 CONTR OL A 0.00 4 0
LYM84 13401. 2 B 0.09 3 1.52E- 03 80.5 LYMl 60 1347 2.1 B 0.21 8 5.01E- 03 128.9
LYMl 11601. 1 B 0.09 4.19E03 75.6 LYM136 1342 3.4 B 0.19 7.33E03 100
LYM136 13423. 1 B 0.12 5 5.82E03 143.9 LYM136 1342 1.8 B 0.17 3 1.03E02 81.6
LYM84 13403. 3 B 0.1 6.00E03 95.1 LYM293 1339 1.2 B 0.13 8 1.09E02 44.7
LYM136 13421. 5 B 0.10 3 8.84E03 100 LYM84 1340 1.2 B 0.13 8 1.59E02 44.7
LYM136 13421. 6 B 0.12 3 9.57E03 139 LYM136 1342 1.7 B 0.15 3 2.38E02 60.5
LYMl 11602. 6 B 0.13 1.32E02 153.7 LYM84 1340 3.3 B 0.27 5 3.54E02 189.5
LYM136 13423. 2 B 0.08 8 1.41E02 70.7 LYMl 60 1347 2.2 B 0.15 5 6.63E02 63.2
LYM136 13421. 8 B 0.15 5 2.23E02 202.4 LYM293 1339 1.4 B 0.19 3 7.66E02 102.6
LYM84 13403. 2 B 0.15 5 2.32E02 202.4 LYM136 1342 1.5 B 0.18 8.25E02 89.5
LYM84 13404. 4 B 0.09 5 2.70E02 85.4 LYMl 60 1347 1.1 B 0.18 8.25E02 89.5
LYMl 11603. B 0.10 2.70E- 109.8 LYM84 1340 B 0.19 8.89E- 105.3
405
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 8 02 3.1 5 02
LYMl 11604. 4 B 0.07 3 3.33E02 41.5 CONTR OL B 0.09 5 0
LYM1 11602. 1 B 0.08 8 3.79E02 70.7 LYM136 1342 1.5 G 1.16 1.40E05 113.3
LYM84 13403. 1 B 0.15 5.94E02 192.7 LYM 160 1347 2.1 G 1.07 3 1.70E05 97.2
CONTR OL B 0.05 1 0 LYM 160 1347 1.1 G 0.97 3 1.00E04 78.9
LYMl 11601. 1 G 0.75 7.00E06 88.7 LYM84 1340 3.1 G 0.91 5 1.04E04 68.3
LYM84 13403. 1 G 0.75 8.00E06 88.7 LYM136 1342 3.4 G 1.08 1.69E03 98.6
LYM84 13404. 4 G 0.64 9.30E05 61 LYM136 1342 1.8 G 1.03 5 3.80E03 90.3
LYMl 11603. 2 G 0.63 5 7.21E04 59.7 LYM293 1339 1.4 G 1.19 3 5.56E03 119.3
LYM136 13421. 6 G 0.68 8 1.51E03 73 LYM84 1340 1.2 G 0.83 7.52E03 52.6
LYM84 13401. 2 G 0.68 8 2.17E03 73 LYM84 1340 3.3 G 1.41 8 7.77E03 160.7
LYMl 11602. 6 G 0.78 3 3.89E03 96.9 LYM 160 1347 2.2 G 0.76 1.94E02 39.8
LYM136 13423. 1 G 0.83 4.81E03 108.8 LYM136 1342 1.7 G 0.88 2.80E02 61.8
LYM84 13403. 3 G 0.72 4.83E03 81.1 LYM293 1339 1.2 G 0.74 4.83E02 36.1
LYM136 13421. 5 G 0.62 6.93E03 56 LYM293 1339 2.2 G 0.88 5 4.98E02 62.8
LYM84 13403. 2 G 0.78 5 1.19E02 97.5 LYM136 1342 3.2 G 0.79 5 8.04E02 46.2
LYM136 13421. 8 G 0.87 8 1.65E02 120.8 LYM293 1339 1.9 G 0.81 3 8.66E02 49.4
LYM136 13423. 2 G 0.61 2.94E02 53.5 LYM 160 1347 1.4 G 0.72 5 9.93E02 33.3
LYMl 11604. 4 G 0.51 5 2.96E02 29.6 CONTR OL G 0.54 4 0
CONTR OL G 0.39 8 0 LYM136 1342 1.5 H 0.12 2 0.00E +00 119
LYM136 13423. 1 H 0.08 1 0.00E +00 101.6 LYM 160 1347 2.1 H 0.11 8 0.00E +00 110.6
LYM84 13403. 1 H 0.07 6 0.00E +00 88.3 LYM84 1340 3.3 H 0.15 1.00E06 168.9
LYMl 11602. 6 H 0.07 7 1.00E06 91.4 LYM136 1342 3.4 H 0.11 6 3.00E06 108.4
LYMl 11601. 1 H 0.06 8 2.00E06 70.4 LYM293 1339 1.4 H 0.12 1 6.00E06 116.8
LYM84 13403. 2 H 0.08 3 2.00E06 107 LYM136 1342 1.8 H 0.10 6 7.20E05 90.5
LYM136 13421. 8 H 0.08 7 4.00E06 116.3 LYM 160 1347 1.1 H 0.09 7 1.50E04 74.2
LYM136 13421. 6 H 0.06 8 7.00E06 68.1 LYM84 1340 3.1 H 0.08 9 8.80E04 59.1
406
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYM84 13403. 3 H 0.07 9.00E06 74.3 LYM136 1342 1.7 H 0.09 4 1.79E03 68.6
LYM84 13401. 2 H 0.06 5 2.60E05 62.6 LYM84 1340 1.2 H 0.08 6 3.12E- 03 54.6
LYM136 13421. 5 H 0.06 6 2.80E05 65 LYM293 1339 2.2 H 0.09 3 3.73E03 66.4
LYM1 11603. 2 H 0.06 2 3.00E05 54.9 LYM 160 1347 2.2 H 0.08 5 5.45E03 51.8
LYM84 13404. 4 H 0.06 7.80E05 48.6 LYM293 1339 1.9 H 0.08 4 2.09E02 50.7
LYM136 13423. 2 H 0.06 1 1.90E- 03 51.8 LYM293 1339 1.2 H 0.07 8 2.83E02 40.1
LYM1 11604. 4 H 0.05 4 4.45E03 35.4 LYM136 1342 3.2 H 0.08 1 3.88E02 44.5
LYM1 11602. 1 H 0.05 3 1.86E02 31.5 LYM 160 1347 1.4 H 0.07 5 6.82E02 34.5
CONTR OL H 0.04 0 CONTR OL H 0.05 6 0
LYM84 13403. 2 C 1.02 7 1.40E- 05 80.2 LYM136 1342 1.5 C 0.90 8 0.00E +00 100.7
LYM136 13423. 1 C 1.02 3 1.50E- 05 79.7 LYM136 1342 1.8 C 0.87 3 0.00E +00 93.1
LYM136 13421. 8 C 1.02 8 7.30E05 80.6 LYM293 1339 1.2 C 0.79 2 0.00E +00 75.2
LYM84 13403. 1 C 0.89 3 1.60E- 04 56.8 LYM 160 1347 2.1 C 0.72 1 1.00E- 06 59.5
LYM84 13403. 3 C 0.86 7 6.59E04 52.3 LYM84 1340 3.3 C 1.08 9 1.00E- 06 140.8
LYM136 13421. 6 C 0.85 3 2.33E03 49.8 LYM136 1342 3.2 C 0.83 1 3.00E06 83.8
LYM136 13423. 2 C 0.86 4 3.27E03 51.7 LYM293 1339 1.4 C 1.07 1 3.00E06 136.8
LYM1 11603. 2 C 0.81 7 3.91E- 03 43.4 LYM 160 1347 1.1 C 0.77 2 3.10E- 05 70.6
LYM84 13401. 2 C 0.80 4 4.08E03 41.2 LYM84 1340 1.2 C 0.69 2 SHOEOS 52.9
LYM1 11602. 6 C 0.86 2 5.42E03 51.3 LYM136 1342 3.4 C 0.77 7 4.90E05 71.7
LYM1 11601. 1 C 0.78 9 1.01E02 38.6 LYM 160 1347 2.2 C 0.67 2 1.41E04 48.7
LYM1 11604. 4 C 0.82 3 1.54E02 44.5 LYM84 1340 3.1 C 0.64 6 2.21E04 42.9
LYM84 13404. 4 C 0.73 4 2.94E02 28.8 LYM293 1339 1.9 C 0.76 3 2.73E04 68.7
LYM1 11602. 1 C 0.72 7 4.75E02 27.6 LYM136 1342 1.7 C 0.72 7 8.57E04 60.7
LYM136 13421. 5 C 0.71 5 7.12E- 02 25.5 LYM293 1339 2.2 C 0.66 8 1.97E02 47.8
CONTR OL C 0.57 0 CONTR OL C 0.45 2 0
LYM1 11604. 4 E 0.58 3 3.46E03 26.5 LYM84 1340 3.3 E 0.55 9 5.55E02 23
LYM84 13403. E 0.57 1.03E- 24.6 CONTR E 0.45 0
407
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
2 4 02 OL 4
LYM136 13421. 8 E 0.55 1 1.41E02 19.7 LYM136 1342 1.8 D 7.68 5 9.00E05 87.2
LYM84 13403. 3 E 0.56 2 1.74E02 21.9 LYM136 1342 1.5 D 8.41 8 1.06E04 105
LYM1 11601. 1 E 0.54 9 2.97E02 19.1 LYM 160 1347 2.1 D 6.28 5.37E04 52.9
LYM84 13401. 2 E 0.54 3 4.13E02 17.9 LYM293 1339 1.2 D 6.82 3 2.80E03 66.1
LYM84 13403. 1 E 0.53 5 4.77E02 16.1 LYM84 1340 3.1 D 5.88 8.55E03 43.2
LYM84 13404. 4 E 0.52 8 5.27E02 14.6 LYM84 1340 1.2 D 6.16 5 9.88E03 50.1
LYM136 13423. 2 E 0.54 3 5.95E02 18 LYM136 1342 3.2 D 7.68 5 1.61E02 87.2
LYM1 11602. 1 E 0.52 5 6.56E02 13.9 LYM 160 1347 1.1 D 6.81 8 1.69E02 66
CONTR OL E 0.46 1 0 LYM84 1340 3.3 D 9.51 8 2.04E02 131.8
LYM136 13423. 1 D 8.86 3 8.70E05 75.8 LYM136 1342 3.4 D 7.01 5 2.44E02 70.8
LYM84 13403. 1 D 7.74 8 3.02E03 53.7 LYM 160 1347 2.2 D 5.75 8 2.55E02 40.2
LYM84 13403. 2 D 8.73 8 5.76E03 73.4 LYM293 1339 1.4 D 9.49 2.56E02 131.1
LYM84 13403. 3 D 7.59 8 8.31E03 50.7 LYM293 1339 1.9 D 6.7 4.90E02 63.2
LYM84 13401. 2 D 7.03 8 9.19E03 39.6 LYM136 1342 1.7 D 6.53 3 5.11E02 59.1
LYM84 13404. 4 D 6.51 5 1.63E02 29.3 CONTR OL D 4.10 6 0
LYM1 11603. 2 D 7.22 3 2.00E02 43.3 LYM136 1342 1.5 F 6.76 5 1.52E03 21.7
LYM136 13421. 8 D 8.99 3 2.33E02 78.4 LYM136 1342 3.2 F 6.73 2.68E03 21.1
LYM1 11601. 1 D 6.88 8 2.44E02 36.7 LYM136 1342 1.8 F 6.94 3 3.01E03 24.9
LYM136 13421. 6 D 7.33 5 3.72E02 45.5 LYM84 1340 1.2 F 6.2 9.41E03 11.5
LYM136 13423. 2 D 7.40 5 4.76E02 46.9 LYM136 1342 1.7 F 6.38 3.57E02 14.8
LYM1 11602. 6 D 7.60 5 4.83E02 50.9 LYM293 1339 1.9 F 6.22 3 4.78E02 11.9
LYM1 11602. 1 D 6.27 8 4.96E02 24.6 LYM84 1340 3.3 F 6.78 3 5.99E02 22
CONTR OL D 5.04 0 LYM293 1339 1.2 F 6.20 8 7.14E02 11.7
LYM136 13421. 8 F 7.01 8 1.11E04 27.1 LYM 160 1347 1.1 F 6.12 5 9.99E02 10.2
LYM84 13404. 4 F 6.47 8 3.96E04 17.3 CONTR OL F 5.55 9 0
LYM136 13423. 1 F 6.81 7.54E04 23.3
408
2018271407 30 Nov 2018
Gene name Event I D Mea n P value % incr. vs. cont. Gene name Event I D Mea n P value % incr. vs. cont.
LYMl 11601. 1 F 6.77 5 2.36E03 η.Ί
LYM84 13403. 3 F 6.76 5 3.61E03 22.5
LYM84 13403. 1 F 6.53 4.49E03 18.3
LYM84 13403. 2 F 6.90 3 5.58E03 25
LYMl 11603. 2 F 6.81 3 6.13E03 23.4
LYM136 13423. 2 F 6.79 7.54E03 23
LYM84 13401. 2 F 6.63 3 1.04E02 20.1
LYMl 11602. 1 F 6.27 5 1.24E02 13.7
LYM136 13421. 6 F 6.11 3 1.93E02 10.7
LYMl 11604. 4 F 6.70 8 2.78E02 21.5
CONTR OL F 5.52 1 0
Table 34. Results of the tissue culture experiments. Provided are the measured values of each tested parameter [parameters (ID.) A-F according to the parameters described in Table 33 above] in plants expressing the indicated polynucleotides. “Ev” = event; “P” = P-value; “Mean ” = the average of measured parameter across 5 replicates. % incr. vs. cont. = percentage of increase versus control (as compared to control).
Table 35
Measured parameters at the tissue culture assay (T1 experiment) for transformed agriculture improving trait genes
Tested Parameters ID
Dry Weight (gr) A
Fresh Weight (gr) B
RGR Of Root Coverage C
Roots Coverage TP3 (cm2) D
RGR Of Roots Length E
Roots Length TP3 (cm) F
Leaf Area TP3 (cm) G
RGR Of Leaf Area H
Leaf Area TP1 (cm) I
Roots Length TP1 (cm) J
Table 35: Provided are the identification (ID) letters of each of the Tested Parameters.
TP3 = Time point 3; RGR - relative growth rate. TP1 = Time point 1.
409
2018271407 30 Nov 2018
Table 36
Results obtained in a Tl experiment at the tissue culture assay
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
LYM161 A 0.014 1.24E- 03 90.4 LYM240 H 0.078 2.23E-02 31.2
LYM219 A 0.01 2.07E- 03 28.3 LYM228 H 0.077 2.59E-02 29.8
LYM83 A 0.01 1.93E- 02 30.6 LYM189 H 0.076 3.81E-02 28
LYM278 A 0.009 3.67E- 02 25.9 LYM184 H 0.082 4.23E-02 37.8
LYM204 A 0.01 5.84E- 02 36.3 LYM248 H 0.076 6.24E-02 27.1
LYM155 A 0.013 6.05E- 02 70.7 CONTROL H 0.06 0
LYM221 A 0.009 9.70E- 02 22.9 LYM117 A 0.009 5.26E-04 65.7
CONTROL 0.007 0 LYM146 A 0.01 1.17E-02 81.5
LYM161 B 0.282 9.40E- 05 75.5 LYM144 A 0.007 1.61E-02 34.3
LYM83 B 0.213 3.45E- 03 32.5 LYM93 A 0.008 7.31E-02 43.5
LYM219 B 0.207 2.66E- 02 28.8 LYM123 A 0.006 7.96E-02 19
LYM204 B 0.207 6.73E- 02 28.8 LYM127 A 0.007 9.16E-02 32.1
LYM155 B 0.267 9.60E- 02 66.3 CONTROL A 0.005 0
LYM278 B 0.191 9.94E- 02 18.9 LYM117 B 0.198 7.40E-05 75.7
CONTROL 0.161 0 LYM127 B 0.159 8.58E-04 41.3
LYM221 C 0.468 1.90E- 03 94.9 LYM146 B 0.186 8.64E-03 65.3
LYM155 C 0.468 2.86E- 03 95.2 LYM192 B 0.148 1.44E-02 31.7
LYM161 C 0.484 3.41E- 03 101.5 LYM144 B 0.153 4.48E-02 35.5
LYM188 C 0.4 2.12E- 02 66.5 LYM93 B 0.172 5.30E-02 52.3
LYM 144 C 0.355 9.94E- 02 48.1 LYM135 B 0.178 5.72E-02 58
CONTROL 0.24 0 LYM123 B 0.156 5.80E-02 38.4
LYM188 D 3.425 1.59E- 03 67.6 LYM200 B 0.153 6.00E-02 35.5
LYM221 D 3.964 1.79E- 03 94 CONTROL B 0.113 0
LYM155 D 3.85 1.26E- 02 88.4 LYM135 C 0.625 1.90E-05 79.8
LYM 144 D 3.038 4.84E- 02 48.6 LYM127 C 0.614 5.30E-05 76.4
LYM161 D 4.023 7.69E- 96.8 LYM146 C 0.553 1.54E-04 58.8
410
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
02
CONTROL 2.044 0 LYMl 17 C 0.537 5.03E-04 54.2
LYM155 E 0.444 9.80E- 03 58.2 LYMl 54 c 0.56 1.78E-03 60.9
LYM221 E 0.413 2.08E- 02 47 LYM192 c 0.492 3.37E-03 41.5
LYMl 88 E 0.41 2.14E- 02 46.1 LYM93 c 0.477 8.26E-03 37
LYM161 E 0.412 2.44E- 02 46.6 LYM200 c 0.483 9.48E-03 38.9
LYMl 44 E 0.405 2.83E- 02 44.2 LYM144 c 0.473 1.14E-02 35.8
CONTROL 0.281 0 LYM123 c 0.473 1.75E-02 35.8
LYMl 88 F 4.053 6.86E- 04 41.3 LYM273 c 0.473 1.83E-02 35.8
LYMl 44 F 3.97 2.09E- 03 38.4 CONTROL c 0.348 0
LYM221 F 4.058 3.24E- 03 41.5 LYM192 D 4.217 1.10E-03 42.2
LYM161 F 3.914 2.30E- 02 36.5 LYM93 D 4.075 1.12E-03 37.4
LYM278 F 3.493 5.26E- 02 21.8 LYM144 D 4.057 4.97E-03 36.8
LYM155 F 4.084 5.40E- 02 42.4 LYMl 17 D 4.4 7.86E-03 48.4
LYM204 F 3.68 6.02E- 02 28.3 LYM146 D 4.555 9.70E-03 53.6
CONTROL 2.868 0 LYM200 D 4.151 3.73E-02 40
LYM83 G 0.883 2.63E- 04 31.7 LYM135 D 5.162 4.62E-02 74
LYM161 G 1.129 1.06E- 03 68.3 LYM127 D 5.078 5.37E-02 71.2
LYM221 G 0.856 4.40E- 03 27.7 LYM123 D 4.062 7.29E-02 37
LYM278 G 0.834 9.29E- 03 24.3 CONTROL D 2.966 0
LYM155 G 1.024 2.05E- 02 52.8 LYM127 E 0.535 9.11E-04 48.7
LYMl 44 G 0.823 3.31E- 02 22.7 LYM135 E 0.508 2.21E-03 41
LYM204 G 0.789 4.70E- 02 17.6 LYMl 17 E 0.463 1.53E-02 28.7
CONTROL 0.671 0 LYM93 E 0.448 2.20E-02 24.5
LYM161 H 0.122 4.00E- 06 71.4 LYM192 E 0.444 3.60E-02 23.2
LYM155 H 0.112 2.07E- 04 56.9 LYMl 54 E 0.456 4.57E-02 26.7
LYM83 H 0.096 7.84E- 03 35.1 CONTROL E 0.36 0
LYM278 H 0.09 3.91E- 02 26.5 LYM93 F 4.431 8.92E-04 21.7
411
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
LYM221 H 0.089 4.80E- 02 25.3 LYM192 F 4.435 9.73E-03 21.8
LYM 144 H 0.088 6.23E- 02 23.8 LYM144 F 4.132 6.49E-02 13.5
CONTROL 0.071 0 LYMD3 F 4.108 7.42E-02 12.8
LYM227 A 0.01 8.00E- 05 53.1 LYM135 F 4.683 9.16E-02 28.6
LYM32 A 0.007 1.81E- 03 19.8 CONTROL F 3.641 0
LYM40 A 0.009 1.92E- 03 49.9 LYMD7 G 0.72 6.DE-04 22.6
LYM273 A 0.009 2.65E- 03 44.7 LYM117 G 0.904 2.69E-03 53.9
LYM273 A 0.01 3.DE- OS 63.1 LYM192 G 0.701 3.05E-03 19.3
LYM200 A 0.01 8.53E- 03 57.9 LYM135 G 0.885 1.05E-02 50.7
LYM118 A 0.008 2.84E- 02 24.2 LYM146 G 0.854 1.87E-02 45.4
LYM 164 A 0.009 3.85E- 02 39.1 LYM144 G 0.693 2.45E-02 18
LYM23 A 0.008 6.86E- 02 32.3 LYM93 G 0.737 9.00E-02 25.4
LYM93 A 0.01 8.67E- 02 61.9 CONTROL G 0.588 0
LYM 122 A 0.008 9.35E- 02 28.3 LYM117 H 0.095 1.50E-05 62.9
CONTROL 0.006 0 LYM135 H 0.09 4.07E-04 55.5
LYM227 B 0.248 4.10E- 05 47.9 LYM146 H 0.085 9.67E-04 46.9
LYM40 B 0.216 2.49E- 04 28.6 LYM93 H 0.075 2.94E-02 29.7
LYM273 B 0.231 7.82E- 03 37.8 LYMD7 H 0.073 7.67E-02 25.7
LYM200 B 0.251 1.45E- 02 49.8 CONTROL H 0.058 0
LYM 146 B 0.229 1.83E- 02 36.6 LYM180 A 0.006 1.39E-04 44.3
LYM273 B 0.249 1.90E- 02 48.6 LYM243 A 0.006 3.56E-03 64.4
LYM 164 B 0.222 2.09E- 02 32.2 LYM194 A 0.006 9.85E-03 62.5
LYM 154 B 0.216 3.87E- 02 28.8 LYM221 A 0.005 4.06E-02 34.6
LYM 122 B 0.189 6.35E- 02 12.9 LYM204 A 0.006 4.55E-02 60.5
LYM135 B 0.197 7.69E- 02 17.4 LYM109 A 0.005 6.49E-02 29.4
CONTROL 0.168 0 LYM233 A 0.007 7.DE-02 70.9
LYM234 C 0.482 5.87E- 02 32.1 CONTROL A 0.004 0
412
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
LYM200 C 0.469 6.18E- 02 28.7 LYM243 B 0.148 1.67E-02 28.8
LYM227 c 0.47 6.80E- 02 28.9 CONTROL B 0.115 0
LYM 154 c 0.481 7.23E- 02 31.9 LYM233 C 0.383 4.28E-04 55.4
CONTROL 0.364 0 LYM204 C 0.377 6.67E-04 52.8
LYM200 D 3.874 5.17E- 02 27.9 LYM248 C 0.377 1.32E-03 53.1
CONTROL 3.029 0 LYM194 C 0.366 1.66E-03 48.4
LYM273 G 1.057 1.01E- 04 23 LYMl 86 C 0.387 1.93E-03 57.1
LYM227 G 1.033 1.50E- 04 20.2 LYM243 C 0.347 4.89E-03 40.9
LYM200 G 1.012 2.71E- 04 17.8 LYM83 C 0.349 5.96E-03 41.5
LYM273 G 1.027 2.79E- 04 19.6 LYMl 09 C 0.34 1.16E-02 38
LYM 154 G 1.022 1.12E- 02 18.9 LYM228 C 0.336 1.95E-02 36.4
LYM 164 G 1.027 8.89E- 02 19.5 LYMl 15 C 0.339 1.96E-02 37.7
LYM 146 G 1.063 8.89E- 02 23.7 LYM252 C 0.34 2.33E-02 38
LYM40 G 0.97 9.15E- 02 12.9 CONTROL C 0.246 0
LYM135 G 1.045 9.75E- 02 21.6 LYM243 D 2.941 4.12E-03 38.7
CONTROL 0.859 0 LYMl 15 D 2.938 6.77E-03 38.6
LYM93 H 0.117 2.44E- 02 29.7 LYM194 D 3.087 8.47E-03 45.6
LYM 146 H 0.112 3.08E- 02 24.4 LYM233 D 3.284 1.36E-02 54.9
LYM273 H 0.108 4.22E- 02 20.3 LYM204 D 3.176 2.25E-02 49.8
LYM273 H 0.107 5.78E- 02 19 LYM83 D 2.959 3.59E-02 39.6
LYM 154 H 0.108 6.06E- 02 19.8 LYMl 09 D 2.886 4.28E-02 36.1
LYM 164 H 0.108 6.30E- 02 20 LYM248 D 3.188 5.13E-02 50.4
LYM135 H 0.108 7.21E- 02 19.8 CONTROL D 2.12 0
LYM227 H 0.106 7.58E- 02 17.7 LYM248 E 0.416 9.58E-03 27.1
LYM200 H 0.106 7.94E- 02 17.6 LYM204 E 0.389 6.24E-02 19.1
LYM234 H 0.107 8.46E- 02 18.6 LYM233 E 0.39 7.40E-02 19.4
CONTROL 0.09 0 LYM83 E 0.385 8.68E-02 17.7
LYM131 A 0.008 2.70E- 60.5 CONTROL E 0.327 _ 0
413
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
02
LYM 194 A 0.007 5.17E- 02 36.9 LYM115 F 3.729 2.49E-03 13.6
LYM261 A 0.006 5.62E- 02 29.7 LYM248 F 4.115 5.82E-03 25.3
LYM 185 A 0.01 5.77E- 02 99.7 LYM228 F 3.665 2.44E-02 11.6
LYM 123 A 0.007 7.73E- 02 39 LYM204 F 3.852 4.19E-02 17.3
LYM 192 A 0.006 7.80E- 02 14.4 LYM83 F 3.788 6.51E-02 15.4
CONTROL 0.005 0 LYM233 F 3.97 8.99E-02 20.9
LYM252 B 0.165 5.43E- 03 38.4 CONTROL F 3.284 0
LYM131 B 0.181 2.17E- 02 51.5 LYM233 G 0.768 5.26E-03 41.5
LYM 194 B 0.164 3.02E- 02 37.5 LYM194 G 0.73 1.12E-02 34.5
LYM 185 B 0.225 3.55E- 02 87.9 LYM228 G 0.597 4.27E-02 9.8
LYM 123 B 0.154 4.39E- 02 28.9 LYM243 G 0.676 4.45E-02 24.5
CONTROL 0.12 0 LYM215 G 0.626 6.82E-02 15.4
LYM 185 C 0.527 6.00E- 06 97.4 LYM204 G 0.697 8.47E-02 28.3
LYM 123 C 0.495 1.50E- 05 85.7 CONTROL G 0.543 0
LYM131 C 0.454 2.90E- 05 70.4 LYM233 H 0.078 1.07E-04 38.3
LYM 194 C 0.413 1.09E- 03 54.7 LYM194 H 0.077 4.96E-04 36.3
LYM243 C 0.406 3.94E- 03 52.1 LYM204 H 0.069 2.23E-02 23.5
LYM252 C 0.375 1.15E- 02 40.5 LYM243 H 0.068 2.43E-02 20.9
LYM233 C 0.366 1.81E- 02 37.2 LYM252 H 0.071 2.64E-02 26.5
LYM215 C 0.338 7.24E- 02 26.7 CONTROL H 0.056 0
CONTROL 0.267 0 LYM189 A 0.009 3.27E-04 32.5
LYM131 D 3.668 3.37E- 04 67.4 LYM32 A 0.01 8.84E-03 51.3
LYM215 D 2.788 1.33E- 02 27.2 LYM219 A 0.01 4.76E-02 49.4
LYM 194 D 3.34 2.15E- 02 52.4 LYM240 A 0.009 5.15E-02 33.2
LYM 123 D 4.004 3.68E- 02 82.7 LYM161 A 0.01 7.76E-02 52
LYM 185 D 4.257 5.21E- 02 94.2 CONTROL A 0.007 0
LYM233 D 3.014 6.12E- 37.5 LYM32 B 0.19 9.39E-04 27.5
414
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
02
LYM252 D 3.036 7.43E- 02 38.5 LYM249 B 0.225 2.56E-03 51
CONTROL 2.192 0 LYM189 B 0.21 3.29E-02 40.5
LYM131 E 0.469 8.00E- 06 42.8 LYM193 B 0.193 6.69E-02 29.1
LYM 185 E 0.47 2.28E- 04 43.1 LYM261 B 0.177 7.40E-02 18.5
LYM 123 E 0.448 3.49E- 04 36.4 CONTROL B 0.149 0
LYM 194 E 0.411 6.53E- 03 25.3 LYM234 C 0.531 0.00E+00 123.9
LYM243 E 0.407 8.35E- 03 24 LYM249 C 0.539 0.00E+00 127.6
LYM252 E 0.383 7.84E- 02 16.6 LYM219 C 0.517 7.00E-06 118.2
CONTROL 0.328 0 LYM240 C 0.415 2.30E-05 75.1
LYM131 F 4.042 7.90E- 05 32 LYM74 C 0.443 6.30E-05 86.9
LYM243 F 3.668 1.22E- 02 19.8 LYM179 C 0.406 1.06E-04 71.1
LYM215 F 3.383 3.49E- 02 10.5 LYM161 C 0.409 1.34E-04 72.4
LYM 194 F 3.635 4.63E- 02 18.8 LYM79 C 0.412 1.71E-04 73.6
LYM 123 F 3.912 5.09E- 02 27.8 LYM188 C 0.38 5.35E-04 60.3
LYM 185 F 4.091 7.35E- 02 33.7 LYM278 C 0.376 1.23E-03 58.5
CONTROL 3.061 0 LYM261 C 0.369 1.75E-03 55.6
LYM131 G 0.834 1.00E- 06 54 LYM224 C 0.382 3.15E-03 61.3
LYM 123 G 0.78 2.30E- 05 44.1 LYM189 C 0.349 5.89E-03 47.3
LYM233 G 0.643 8.49E- 03 18.8 LYM32 C 0.341 2.37E-02 44
LYM252 G 0.713 2.16E- 02 31.8 LYM193 C 0.322 4.86E-02 35.6
LYM243 G 0.656 2.67E- 02 21.2 LYM155 C 0.302 9.72E-02 27.2
LYM 192 G 0.669 2.77E- 02 23.5 CONTROL C 0.237 0
LYM261 G 0.637 3.41E- 02 17.7 LYM240 D 3.448 1.00E-06 67.3
LYM 194 G 0.715 5.43E- 02 32 LYM188 D 3.137 6.00E-06 52.2
LYM 185 G 0.825 5.58E- 02 52.4 LYM179 D 3.35 9.72E-04 62.6
CONTROL 0.541 0 LYM189 D 2.884 1.31E-03 39.9
LYM131 H 0.087 3.00E- 06 53.4 LYM234 D 4.399 4.93E-03 113.5
415
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
LYM 185 H 0.092 1.70E- 05 62.1 LYM249 D 4.486 8.04E-03 m.i
LYM 123 H 0.083 3.10E- 05 46.2 LYM74 D 3.651 9.49E-03 112
LYM252 H 0.077 2.13E- 03 34.4 LYM261 D 3.07 2.24E-02 49
LYM 194 H 0.077 3.63E- 03 34.1 LYM161 D 3.381 2.29E-02 64.1
LYM 192 H 0.073 1.17E- 02 27.3 LYM278 D 3.171 2.40E-02 53.9
LYM261 H 0.069 4.77E- 02 20.8 LYM79 D 3.427 3.04E-02 66.3
LYM243 H 0.068 7.19E- 02 18.9 LYM219 D 4.274 7.53E-02 107.4
CONTROL 0.057 0 LYM155 D 2.558 8.03E-02 24.1
LYM245 A 0.008 1.20E- 02 38.7 CONTROL D 2.061 0
LYM228 A 0.008 1.47E- 02 44.3 LYM249 E 0.438 5.00E-06 53.9
LYM240 A 0.008 2.80E- 02 45.2 LYM234 E 0.431 3.10E-05 51.7
LYM260 A 0.007 3.74E- 02 27.4 LYM219 E 0.401 1.65E-03 41.2
LYM 189 A 0.007 3.75E- 02 27 LYM224 E 0.397 2.21E-03 39.7
LYM 184 A 0.009 5.19E- 02 49.1 LYM179 E 0.378 3.93E-03 33
CONTROL 0.006 0 LYM79 E 0.383 5.24E-03 34.7
LYM245 B 0.16 1.51E- 02 41.9 LYM240 E 0.362 8.54E-03 27.4
LYM260 B 0.15 2.23E- 02 33 LYM74 E 0.373 9.36E-03 31.3
LYM 189 B 0.136 4.67E- 02 20.6 LYM189 E 0.352 2.77E-02 23.9
LYM240 B 0.144 5.98E- 02 27.5 LYM261 E 0.35 3.22E-02 23
LYM228 B 0.148 7.33E- 02 31.1 LYM188 E 0.352 3.95E-02 23.9
LYM 184 B 0.159 8.46E- 02 41.5 LYM193 E 0.351 5.12E-02 23.4
CONTROL 0.113 0 LYM161 E 0.348 5.53E-02 22.4
LYM 184 C 0.46 1.23E- 03 98.6 LYM32 E 0.344 8.20E-02 21
LYM240 C 0.363 6.06E- 03 56.9 LYM251 E 0.338 9.37E-02 18.9
LYM 109 C 0.33 2.96E- 02 42.4 CONTROL E 0.284 0
LYM245 C 0.322 5.20E- 02 39.3 LYM74 F 3.635 3.70E-05 18.8
LYM248 C 0.323 5.28E- 02 39.7 LYM249 F 4.232 3.54E-03 38.3
416
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
LYM189 C 0.318 6.19E- 02 37.2 LYM240 F 3.548 3.55E-03 16
LYM186 c 0.315 6.33E- 02 36 LYM234 F 4.189 3.00E-02 36.9
CONTROL 0.232 0 LYM261 F 3.464 4.23E-02 13.2
LYM109 D 2.67 9.12E- 04 41.4 LYM179 F 3.591 9.25E-02 17.4
LYM186 D 2.588 1.06E- 02 37 CONTROL F 3.06 0
LYM240 D 2.99 1.63E- 02 58.4 LYM240 G 0.919 5.00E-06 57.4
LYM189 D 2.592 1.94E- 02 37.3 LYM249 G 0.849 1.20E-05 45.4
LYM245 D 2.594 4.12E- 02 37.4 LYM278 G 0.879 9.10E-05 50.5
LYM115 D 2.352 4.59E- 02 24.6 LYM261 G 0.799 1.65E-04 36.8
LYM248 D 2.622 7.42E- 02 38.8 LYM224 G 0.739 2.43E-04 26.5
LYM180 D 2.304 7.43E- 02 22 LYM189 G 0.853 1.11E-03 46
CONTROL 1.888 0 LYM161 G 0.913 1.62E-03 56.3
LYM240 E 0.391 1.32E- 02 29.6 LYM79 G 0.915 2.06E-03 56.7
LYM248 E 0.386 2.03E- 02 28.1 LYM188 G 0.747 1.25E-02 27.9
LYM186 E 0.384 2.65E- 02 27.4 LYM219 G 0.841 1.69E-02 44.1
LYM184 E 0.417 5.28E- 02 38.2 LYM74 G 0.762 1.99E-02 30.4
LYM180 E 0.366 6.72E- 02 21.5 LYM179 G 0.795 4.21E-02 36.2
LYM109 E 0.364 7.31E- 02 20.8 LYM234 G 0.815 4.73E-02 39.5
CONTROL 0.301 0 CONTROL G 0.584 0
LYM240 F 3.576 2.32E- 03 26.9 LYM161 H 0.097 2.10E-05 62.6
LYM109 F 3.246 1.05E- 02 15.2 LYM240 H 0.094 4.70E-05 57.3
LYM248 F 3.449 1.22E- 02 22.4 LYM79 H 0.095 7.60E-05 59.9
LYM180 F 3.271 3.14E- 02 16 LYM189 H 0.091 1.67E-04 53.1
LYM186 F 3.533 4.22E- 02 25.3 LYM278 H 0.088 4.71E-04 47.7
LYM189 F 3.237 6.97E- 02 14.8 LYM249 H 0.086 7.09E-04 45.4
LYM115 F 3.16 7.89E- 02 12.1 LYM219 H 0.087 1.31E-03 46
CONTROL 2.819 0 LYM234 H 0.086 2.25E-03 44.5
LYM184 G 0.774 3.40E- 36 LYM261 H 0.082 3.68E-03 38.3
417
2018271407 30 Nov 2018
Gene name ID Mean P value % incr. vs. cont Gene name ID Mean P value % incr. vs. cont
05
LYM228 G 0.749 1.29E- 03 31.6 LYM32 H 0.086 4.72E-03 44.3
LYM 189 G 0.726 6.50E- 03 27.5 LYM179 H 0.081 1.11E-02 35.5
LYM240 G 0.735 2.55E- 02 29.1 LYM74 H 0.081 1.50E-02 36.7
LYM 186 G 0.653 4.33E- 02 14.7 LYM188 H 0.077 2.66E-02 29.3
CONTROL 0.569 0 LYM224 H 0.077 4.09E-02 30.1
CONTROL H 0.059 0
LYM38 B 0.115 13.8
LYM126 B 0.136 34.3
CONTROL B 0.101 0
LYM36 A 0.004 E-4.75 01 6.7 LYM36 I 0.138 E-014.84 7.8
CONTROL A 0.004 0 CONTROL I 0.128 0
LYM36 I 0.09 E-4.34 01 7 LYM36 J 0.693 E-017.20 3.3
CONTROL I 0.084 _ 0 CONTROL J 0.671 _ 0
Table 36. Results of the tissue culture experiments. Provided are the measurec values of each tested parameter [parameters (ID.) A-F according to the parameters described in Table 35 above] in plants expressing the indicated polynucleotides. “Ev” = event; “P” = P-value; “Mean ” = the average of measured parameter across events.
% incr. vs. cont. = percentage of increase versus control (as compared to control).
Table 37
Measured parameters at the tissue culture assay low nitrogen (T2 experiment) for transformed agriculture improving trait genes
Tested Parameters ID
Dry Weight (gr) G
Fresh Weight (gr) H
RGR Of Root Coverage I
Roots Coverage TP3 (cm2) J
RGR Of Roots Length K
Roots Length TP3 (cm) L
Leaf Area TP3 (cm) M
RGR Of Leaf Area N
Table 37: Provided are the identification (ID) letters o each of the Tested
Parameters. TP3 - Time Point 3; RGR- Relative Growth Rate plants were grown on low nitrogen as described above.
2018271407 30 Nov 2018
418
Table 38
Results obtained in a T2 experiment at the tissue culture assay low nitrogen
Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
LYM17 8 12161 .1 G 0.006 2.07E03 39.1 LYM5 12432 .1 G 0.007 1.40E05 69.3
LYM37 11801 .2 G 0.007 3.50E03 60 LYM268 12483 .2 G 0.007 1.56E04 56.6
LYM34 11901 .1 G 0.006 3.63E03 31.9 LYM1 11602 .6 G 0.009 2.16E04 107. 8
CONTR OL G 0.004 0 LYM178 12164 .3 G 0.009 3.01E03 110. 2
LYM37 11801 .2 I 1.024 1.65E04 56.9 LYM132 12275 .3 G 0.006 3.52E03 50.6
LYM178 12161 .1 I 1.023 5.17E04 56.8 LYM129 12572 .2 G 0.006 5.24E03 41.6
CONTR OL I 0.652 0 LYM1 11604 .4 G 0.006 5.89E03 39.2
LYM12 11873 .4 L 6.672 5.23E03 23 LYM129 12571 .3 G 0.006 7.22E03 45.2
LYM37 11801 .2 L 6.593 5.54E03 21.5 LYM268 12483 .4 G 0.008 7.89E03 95.8
CONTR OL L 5.425 0 LYM178 12164 .2 G 0.006 8.14E03 50.6
LYM5 12436 .1 G 0.008 3.89E04 83.5 LYM132 12273 .2 G 0.005 8.21E03 30.7
LYM86 12183 .3 G 0.007 5.67E04 63 CONTR OL G 0.004 0
LYM82 12203 .5 G 0.011 2.31E03 153 LYM1 11602 .6 H 0.177 1.00E06 103. 6
LYM82 12201 .2 G 0.008 2.64E03 77.8 LYM5 12432 .1 H 0.142 1.94E04 64
LYM86 12182 .3 G 0.007 2.83E03 49.9 LYM268 12483 .2 H 0.154 9.59E04 76.8
CONTR OL G 0.004 0 LYM129 12572 .2 H 0.123 1.86E03 41.4
LYM268 12482 .1 H 0.115 8.00E06 61.6 LYM132 12275 .3 H 0.144 2.77E03 66.3
LYM82 12203 .5 H 0.189 2.40E04 166 LYM129 12573 .5 H 0.13 3.59E03 50.2
LYM44 11884 .1 H 0.12 6.61E04 67.8 LYM6 11735 .1 H 0.118 8.04E03 36
LYM6 11735 .2 H 0.102 6.94E04 43.6 LYM178 12164 .2 H 0.133 9.56E03 53.6
LYM82 12201 .2 H 0.144 1.47E03 101. 5 CONTR OL H 0.087 0
LYM129 12573 .1 H 0.122 1.54E03 71.9 LYM268 12483 .4 I 1.459 0.00E+ 00 94.9
LYM86 12183 .3 H 0.132 1.66E03 85.3 LYM5 12435 .1 I 1.327 5.00E06 77.2
LYM86 12182 .3 H 0.124 2.94E03 73.7 LYM178 12164 .3 I 1.39 2.60E05 85.7
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
LYM5 12436 .1 H 0.155 6.44E03 118. 2 LYM129 12571 .3 I 1.264 3.90E05 68.7
LYM129 12572 .2 H 0.121 7.61E03 69.9 LYM129 12573 .5 I 1.215 4.60E05 62.3
LYM82 12204 .6 H 0.091 9.35E03 27.4 LYM268 12483 .2 I 1.195 7.50E05 59.5
LYM5 12435 .1 H 0.104 9.36E03 45.6 LYM268 12482 .3 I 1.16 3.42E04 54.9
LYM8 11984 .1 H 0.15 9.54E03 110. 2 LYM134 12314 .2 I 1.199 4.26E04 60.1
CONTR OL H 0.071 0 LYM1 11603 .2 I 1.094 1.02E03 46.1
LYM268 12483 .4 I 1.515 0.00E+ 00 124. 3 LYM5 12432 .2 I 1.082 2.26E03 44.5
LYM82 12203 .2 I 1.459 0.00E+ 00 116 LYM268 12482 .1 I 1.23 4.74E03 64.3
LYM82 12203 .5 I 1.419 8.00E06 110. 1 LYM1 11602 .6 I 1.073 6.12E03 43.2
LYM8 11984 .1 I 1.336 1.10E05 97.9 LYM132 12276 .1 I 1.134 7.20E03 51.5
LYM44 11882 .1 I 1.135 2.40E05 68.1 CONTR OL I 0.749 0
LYM5 12436 .1 I 1.264 3.40E05 87.2 LYM268 12483 .4 J 12.19 3.00E05 90.2
LYM86 12183 .3 I 1.056 1.39E04 56.3 LYM5 12435 .1 J 10.94 5 1.14E03 70.8
LYM86 12182 .3 I 1.219 1.86E04 80.5 LYM129 12571 .3 J 10.37 5 1.25E03 61.9
LYM5 12436 .2 I 1.072 2.95E04 58.7 LYM129 12573 .5 J 10.09 3 2.32E03 57.5
LYM82 12201 .2 I 0.986 3.76E04 46 LYM268 12483 .2 J 9.908 2.57E03 54.6
LYM44 11884 .3 I 1.094 5.32E04 62 LYM268 12482 .3 J 9.59 4.95E03 49.6
LYM44 11885 .4 I 1.249 1.21E03 85 CONTR OL J 6.409 0
LYM268 12484 .2 I 1.147 1.40E03 69.9 LYM129 12571 .3 K 0.76 6.00E05 41.4
LYM8 11982 .7 I 0.958 1.62E03 41.9 LYM5 12435 .1 K 0.754 6.90E05 40.3
LYM8 11983 .1 I 1.007 1.85E03 49.1 CONTR OL K 0.538 0
LYM129 12573 .1 I 0.935 2.77E03 38.4 LYM129 12571 .3 L 7.821 3.52E04 23.6
LYM129 12573 .3 I 0.901 2.85E03 33.4 LYM5 12435 .1 L 7.76 5.05E04 22.6
LYM268 12482 .1 I 0.992 3.37E03 46.9 LYM268 12483 .4 L 7.69 6.12E04 21.5
LYM6 11734 .3 I 1.105 5.28E03 63.6 CONTR OL L 6.328 0
LYM5 12435 I 1.047 6.27E- 55.1 LYM5 12432 M 0.837 3.00E- 67.1
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
.1 03 .1 06
LYM129 12572 .2 I 0.97 7.93E03 43.6 LYM129 12571 .3 M 0.732 2.50E05 46.1
CONTR OL I 0.675 0 LYM132 12273 .2 M 0.685 8.40E05 36.7
LYM82 12203 .2 J 12.32 8 1.84E03 118. 3 LYM1 11604 .4 M 0.692 1.78E04 38.1
LYM129 12573 .3 J 7.459 3.21E03 32.1 LYM129 12573 .5 M 0.797 3.26E04 59.1
LYM268 12483 .4 J 12.72 6 6.83E03 125. 4 LYM178 12163 .3 M 0.668 6.70E04 33.4
LYM82 12201 .2 J 8.641 8.55E03 53 LYM1 11602 .6 M 0.95 7.84E04 89.7
CONTR OL J 5.647 0 LYM5 12435 .1 M 0.756 8.12E04 51.1
LYM82 12203 .2 K 0.636 1.22E03 30 LYM132 12275 .3 M 0.727 1.36E03 45.3
LYM5 12435 .1 K 0.624 1.73E03 27.8 LYM1 11602 .1 M 0.676 1.74E03 35.1
LYM86 12182 .3 K 0.622 2.13E03 27.3 LYM268 12483 .4 M 0.889 2.41E03 77.5
LYM268 12483 .4 K 0.628 3.66E03 28.5 LYM178 12164 .3 M 0.93 2.60E03 85.7
LYM44 11884 .3 K 0.614 5.55E03 25.7 LYM178 12164 .2 M 0.732 4.37E03 46.3
CONTR OL K 0.489 0 LYM129 12572 .2 M 0.7 5.37E03 39.9
LYM82 12203 .2 L 7.098 1.50E05 35.2 LYM134 12314 .2 M 0.746 5.84E03 48.9
LYM86 12182 .3 L 6.996 2.30E05 33.3 LYM1 11603 .2 M 0.78 9.55E03 55.8
LYM268 12483 .4 L 7.232 2.69E04 37.8 CONTR OL M 0.501 0
LYM5 12435 .1 L 6.758 3.03E04 28.7 LYM1 11602 .6 N 0.098 0.00E+ 00 96
LYM82 12203 .5 L 7.346 4.61E04 39.9 LYM178 12164 .3 N 0.094 0.00E+ 00 87
LYM86 12183 .3 L 6.532 8.44E04 24.4 LYM268 12483 .4 N 0.092 0.00E+ 00 83.5
LYM5 12432 .1 L 6.265 1.21E03 19.3 LYM5 12432 .1 N 0.083 1.00E06 65.1
LYM5 12436 .1 L 6.713 1.40E03 27.9 LYM5 12435 .1 N 0.083 6.00E06 65.5
LYM44 11884 .3 L 6.768 1.41E03 28.9 LYM129 12573 .5 N 0.08 7.00E06 60.5
LYM268 12484 .2 L 6.748 3.26E03 28.5 LYM1 11603 .2 N 0.082 1.10E05 64.2
LYM44 11885 .4 L 6.724 3.68E03 28.1 LYM129 12571 .3 N 0.076 2.30E05 52.5
LYM8 11983 .1 L 6.614 5.58E03 26 LYM178 12164 .2 N 0.078 3.10E05 55.3
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
LYM5 12436 .2 L 6.52 6.08E03 24.2 LYM132 12275 .3 N 0.073 7.30E05 45.8
LYM86 12181 .3 L 6.239 6.93E03 18.8 LYM132 12273 .2 N 0.071 8.20E05 41.5
LYM8 11984 .1 L 6.951 8.05E03 32.4 LYM132 12276 .1 N 0.076 1.27E04 52.1
CONTR OL L 5.25 0 LYM1 11604 .4 N 0.071 1.52E04 41
LYM82 12203 .2 M 0.836 8.30E05 110. 7 LYM5 12432 .2 N 0.077 1.63E04 53.8
LYM129 12572 .2 M 0.675 4.28E04 69.9 LYM268 12482 .1 N 0.082 1.98E04 63
LYM268 12482 .1 M 0.63 6.12E04 58.6 LYM129 12572 .2 N 0.072 2.38E04 44.1
LYM82 12203 .5 M 0.836 9.33E04 110. 6 LYM134 12313 .2 N 0.084 2.41E04 67.5
LYM86 12183 .3 M 0.684 1.14E03 72.2 LYM134 12314 .2 N 0.073 6.27E04 45.5
LYM82 12204 .6 M 0.491 1.31E03 23.6 LYM268 12483 .2 N 0.077 1.02E03 52.9
LYM82 12201 .2 M 0.787 1.98E03 98.1 LYM1 11602 .1 N 0.068 1.34E03 36.8
LYM268 12483 .4 M 0.825 2.72E03 107. 9 LYM132 12271 .4 N 0.075 2.22E03 49.5
LYM5 12436 .1 M 0.776 3.22E03 95.3 LYM178 12163 .3 N 0.064 7.09E03 26.9
LYM268 12484 .2 M 0.743 4.16E03 87.2 LYM1 11601 .1 N 0.067 8.58E03 34.4
LYM8 11984 .1 M 0.716 4.66E03 80.3 CONTR OL N 0.05 0
LYM8 11982 .7 M 0.565 8.97E03 42.3
LYM5 12435 .1 M 0.674 9.05E03 69.7
LYM86 12182 .3 M 0.719 9.47E03 81.2
LYM268 12481 .1 M 0.627 9.53E03 58
CONTR OL M 0.397 0
LYM268 12483 .4 N 0.085 0.00E+ 00 112. 8
LYM82 12203 .2 N 0.088 0.00E+ 00 119. 9
LYM82 12203 .5 N 0.087 0.00E+ 00 116. 8
LYM5 12436 .1 N 0.078 1.00E06 95.5
LYM82 12201 .2 N 0.074 2.00E06 85
LYM8 11984 N 0.075 3.00E- 87
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
.1 06
LYM86 12183 .3 N 0.072 3.00E06 80.7
LYMl 29 12573 .1 N 0.073 1.00E- 05 82.5
LYM268 12484 .2 N 0.073 1.20E- 05 82.9
LYM86 12182 .3 N 0.074 2.00E05 85.7
LYM5 12435 .1 N 0.072 2.60E05 80.5
LYM268 12482 .1 N 0.066 6.90E05 63.7
LYMl 29 12572 .2 N 0.068 8.00E05 71.2
LYM268 12481 .3 N 0.066 8.40E05 64
LYM44 11884 .3 N 0.067 9.10E05 68
LYM268 12481 .1 N 0.062 4.98E04 54.5
LYM44 11885 .4 N 0.068 5.74E04 70.9
LYM5 12436 .2 N 0.062 9.56E04 55.4
LYM8 11982 .7 N 0.059 1.14E- 03 47
LYM44 11884 .1 N 0.057 2.22E03 42
LYM8 11982 .4 N 0.057 2.75E03 42.3
LYM82 12201 .1 N 0.056 5.28E03 39
LYM86 12183 .1 N 0.056 7.02E03 40.5
LYM44 11885 .3 N 0.059 7.80E03 46.7
LYM44 11882 .1 N 0.056 8.64E03 40.3
CONTR OL N 0.04 0
LYM136 13423 .2 H 0.006 2.00E06 107. 3 LYM136 13423 .2 N 0.085 0.00E+ 00 82.6
LYM136 13421 .8 G 0.005 8.66E04 75.6 LYM136 13421 .8 N 0.082 0.00E+ 00 75.9
LYM84 13404 .4 G 0.007 2.84E03 113. 8 LYM84 13404 .4 N 0.092 0.00E+ 00 96.7
LYM136 13421 .6 G 0.006 2.89E03 94.3 LYM84 13401 .2 N 0.088 0.00E+ 00 88
LYMl 11601 .1 G 0.005 5.24E03 61 LYMl 11601 .1 N 0.081 1.00E06 73.2
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
LYM84 13403 .3 G 0.006 5.30E03 87.8 LYM84 13403 .3 N 0.08 2.00E06 70.6
LYM84 13401 .2 G 0.007 5.52E03 130. 9 LYM84 13403 .2 N 0.073 2.00E06 55.9
LYM1 11603 .2 G 0.004 9.31E03 42.3 LYM136 13423 .1 N 0.085 3.00E06 81.3
LYM84 13403 .2 G 0.005 1.53E02 58.5 LYM1 11602 .6 N 0.07 1.40E05 49.8
LYM1 11602 .6 G 0.005 2.06E02 50.4 LYM136 13421 .6 N 0.075 2.50E05 60.5
LYM136 13423 .1 G 0.007 3.33E02 123. 6 LYM84 13403 .1 N 0.07 7.20E05 50.5
LYM136 13421 .5 G 0.005 5.81E02 72.4 LYM136 13421 .5 N 0.074 1.10E04 57.9
CONTR OL G 0.003 0 LYM1 11603 .2 N 0.071 1.87E04 51.2
LYM1 11601 .1 H 0.103 1.93E04 78.3 LYM1 11604 .4 N 0.058 2.56E02 23.7
LYM84 13403 .3 H 0.11 1.55E03 91.3 LYM1 11602 .1 N 0.056 7.26E02 19.1
LYM84 13403 .2 H 0.113 1.81E03 95.7 CONTR OL N 0.047 0
LYM136 13423 .2 H 0.13 4.05E03 126. 1 LYM136 13421 .8 I 1.163 9.90E05 51.6
LYM1 11603 .2 H 0.093 4.55E03 60.9 LYM136 13423 .1 I 1.209 8.12E04 57.6
LYM84 13404 .4 H 0.13 6.79E03 126. 1 LYM1 11603 .2 I 0.993 1.65E03 29.4
LYM1 11602 .6 H 0.103 7.66E03 78.3 LYM84 13404 .4 I 1.095 2.56E03 42.7
LYM136 13423 .1 H 0.148 9.13E03 156. 5 LYM84 13403 .2 I 1.009 3.97E03 31.5
LYM136 13421 .8 H 0.128 1.35E02 121. 7 LYM84 13403 .1 I 0.997 4.57E03 30
LYM84 13401 .2 H 0.133 1.58E02 130. 4 LYM136 13423 .2 I 1.104 4.86E03 43.9
LYM136 13421 .5 H 0.105 2.31E02 82.6 LYM84 13403 .3 I 1.035 8.51E03 34.9
LYM136 13421 .6 H 0.11 2.99E02 91.3 LYM84 13401 .2 I 1.049 2.01E02 36.8
LYM84 13403 .1 H 0.095 9.17E02 65.2 LYM136 13421 .6 I 0.996 2.96E02 29.8
CONTR OL H 0.058 0 LYM1 11601 .1 I 0.899 6.99E02 17.1
LYM136 13421 .8 M 0.805 0.00E+ 00 84 LYM1 11604 .4 I 0.884 9.29E02 15.3
LYM84 13403 .2 M 0.683 0.00E+ 00 56 CONTR OL I 0.767 0
LYM1 11602 .6 M 0.713 1.50E04 62.9 LYM1 11603 .2 J 8.538 1.59E03 30
LYM84 13404 M 0.893 6.76E- 104 LYM84 13403 J 8.743 1.76E- 33.1
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Gene name Event I D Mea n P value % incr . vs. cont Gene name Event I D Mea n P value % incr . vs. cont
.4 04 .1 02
LYMl 11601 .1 M 0.84 7.01E- 04 92 LYM136 13421 .8 J 10.11 5 2.04E02 54
LYM136 13423 .2 M 0.835 7.48E04 90.9 LYM84 13403 .2 J 8.468 3.82E02 28.9
LYM84 13403 .1 M 0.675 1.60E- 03 54.3 LYM84 13404 .4 J 9.658 5.32E02 47
LYM84 13403 .3 M 0.79 2.37E03 80.6 LYMl 11604 .4 J 7.745 5.47E02 17.9
LYM84 13401 .2 M 0.86 2.92E03 96.6 LYM136 13423 .1 J 10.39 8 6.40E02 58.3
LYM136 13423 .1 M 0.84 4.59E03 92 LYMl 11601 .1 J 7.858 6.86E02 19.6
LYMl 11603 .2 M 0.693 8.94E03 58.3 CONTR OL J 6.568 0
LYM136 13421 .6 M 0.738 9.38E03 68.6 LYM136 13421 .8 L 7.173 1.89E- 03 21.6
LYMl 11604 .4 M 0.54 1.15E- 02 23.4 LYM84 13404 .4 L 7.105 3.22E03 20.4
LYM136 13421 .5 M 0.685 1.62E- 02 56.6 LYM84 13403 .1 L 6.823 8.12E- 03 15.7
LYMl 11602 .1 M 0.538 5.30E02 22.9 LYMl 11603 .2 L 6.868 9.56E03 16.4
CONTR OL M 0.438 0 LYMl 11601 .1 L 6.538 2.95E02 10.8
LYM136 13423 .2 L 6.88 3.42E02 16.6
LYM84 13403 .2 L 6.445 7.62E02 9.3
CONTR OL L 5.899 0
Table 38. Results of the tissue culture T2 experiments. Provided are the measured values of each tested parameter [parameters (ID.) G-L according to the parameters described in Table 37 above] in plants expressing the indicated polynucleotides. “Ev” = event; “P” = P-value; “Mean ” = the average of measured 5 parameter across events. % incr. vs. cont. = percentage of increase versus control (as compared to control).
These results demonstrate that the polynucleotides of the invention are capable of improving yield and additional valuable important agricultural traits such as increase 10 of biomass, abiotic stress tolerance, nitrogen use efficiency, yield, vigor, fiber yield and/or quality. Thus, transformed plants showing improved fresh and dry weight demonstrate the gene capacity to improve biomass a key trait of crops for forage and plant productivity; transformed plants showing improvement of seed yield demonstrate the genes capacity to improve plant productivity; transformed plants showing
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2018271407 30 Nov 2018 improvement of plot coverage and rosette diameter demonstrate the genes capacity to improve plant drought resistance as they reduce the loss of soil water by simple evaporation and reduce the competition with weeds; hence reduce the need to use herbicides to control weeds. Transformed plants showing improvement of relative growth rate of various organs (leaf and 5 root) demonstrate the gene capacity to promote plant growth and hence shortening the needed growth period and/or alternatively improving the utilization of available nutrients and water leading to increase of land productivity; Transformed plants showing improvement of organ number as demonstrated by the leaf number parameter exhibit a potential to improve biomass yield important for forage crops and improve the plant productivity; Transformed plants 10 showing increased root length and coverage demonstrate the gene capacity to improve drought resistance and better utilization of fertilizers as the roots can reach larger soil volume; Transformed plants showing improvement of leaf petiole relative area and leaf blade area demonstrate the genes capacity to cope with limited light intensities results from increasing the plant population densities and hence improve land productivity.
b
Although the invention has been described in conjunction with specific embodiments thereof, it is evident that many alternatives, modifications and variations will be apparent to those skilled in the art. Accordingly, it is intended to embrace all such alternatives, modifications and variations that fall within the spirit and broad scope of the appended claims.
’0 All publications, patents and patent applications mentioned in this specification are herein incorporated in their entirety by reference into the specification, to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated herein by reference. In addition, citation or identification of any reference in this application shall not be construed as an admission that such reference is 25 available as prior art to the present invention. To the extent that section headings are used, they should not be construed as necessarily limiting.
Any reference to publications cited in this specification is not an admission that the disclosures constitute common general knowledge in Australia.
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Other embodiments of the invention as described herein are defined in the following paragraphs:
1. A method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence at least 80 % identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
2. A method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
3. A method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80 % identical to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 36753736 or 3737, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
4. A method of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant, comprising expressing within the plant an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 19743480, and 3675-3737, thereby increasing the yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of the plant.
5. An isolated polynucleotide comprising a nucleic acid sequence at least 80 % identical to SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739, wherein said nucleic acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
6. An isolated polynucleotide comprising the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 37383739.
7. An isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide
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2018271407 30 Nov 2018 which comprises an amino acid sequence at least 80 % homologous to the amino acid sequence set forth in SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737, wherein said nucleic acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
8. An isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
9. A nucleic acid construct comprising the isolated polynucleotide of paragraph 5, 6, 7 or 8, and a promoter for directing transcription of said nucleic acid sequence in a host cell.
10. An isolated polypeptide comprising an amino acid sequence at least 80 % homologous to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737, wherein said amino acid sequence is capable of increasing yield, biomass, growth rate, vigor, oil content, fiber yield, fiber quality, abiotic stress tolerance, and/or nitrogen use efficiency of a plant.
11. An isolated polypeptide comprising the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
12. A plant cell exogenously expressing the polynucleotide of paragraph 5, 6, 7 or 8 or the nucleic acid construct of paragraph 9.
13. A plant cell exogenously expressing the polypeptide of paragraph 10 or 11.
14. The method of paragraph 1 or 3, the isolated polynucleotide of paragraph 5 or 7, the nucleic acid construct of paragraph 9, or the plant cell of paragraph 12, wherein said nucleic acid sequence is as set forth in SEQ ID NO: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, 3738 or 3739.
15. The method of paragraph 1, 2, 3 or 4, the isolated polynucleotide of paragraph 5, 6, 7 or 8, the nucleic acid construct of paragraph 9, or the plant cell of paragraph 12, wherein said polynucleotide consists of the nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3487, 1-239, 467-1973, 3481-3486, 3488-3674, and 3738-3739.
16. The method of paragraph 1, 2, 3 or 4, the isolated polynucleotide of paragraph 5, 6, 7 or 8, the nucleic acid construct of paragraph 9, or the plant cell of paragraph 12, wherein said nucleic acid sequence encodes an amino acid sequence at least 80 % homologous to SEQ ID NO: 246, 240-245, 247-465, 1974-3480, 3675-3736 or 3737.
17. The method of paragraph 1, 2, 3 or 4 or the isolated polynucleotide of paragraph 5, 6, 7 or 8, the nucleic acid construct of paragraph 9, or the plant cell of paragraph 12, wherein said nucleic acid sequence encodes the amino acid sequence selected from the group consisting of SEQ ID NOs: 246, 240-245, 247-465, 1974-3480, and 3675-3737.
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18. The plant cell of paragraph 12 or 13, wherein said plant cell forms a part of a plant.
19. The method of paragraph 1, 2, 3 or 4, the isolated polynucleotide of paragraph 5 or 7, or the nucleic acid construct of paragraph 9, the isolated polypeptide of paragraph 10, the plant cell of paragraph 12 or 13, wherein the abiotic stress is selected from the group consisting of salinity, drought, water deprivation, low temperature, high temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, atmospheric pollution and UV irradiation.
20. The method of paragraph 1, 2, 3 or 4, further comprising growing the plant under the abiotic stress.
21. The method of paragraph 1, 2, 3 or 4, further comprising growing the plant under nitrogen-limiting conditions.
Still further embodiments are within the scope of the following claims.

Claims (20)

  1. CLAIMS:
    1. A method of increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency or reducing time to flowering and/or to inflorescence emergence of a plant, comprising over-expressing within the plant a polypeptide comprising an amino acid sequence at least 80% identical to SEQ ID NO: 434, and growing the plant over-expressing said polypeptide under non-stress conditions, thereby increasing the yield, biomass, growth rate, vigor, and/or nitrogen use efficiency, or reducing the time to flowering and/or to inflorescence emergence, of the plant.
  2. 2. A method of increasing tolerance of a plant to salinity stress, comprising overexpressing within the plant a polypeptide comprising an amino acid sequence at least 80% identical to SEQ ID NO: 434, and growing the plant over-expressing said polypeptide under salinity stress conditions, thereby increasing the tolerance of the plant to salinity stress.
  3. 3. The method of claim 1 or claim 2, wherein said polypeptide is expressed from an exogenous polynucleotide which comprises a nucleic acid sequence at least 80% identical to SEQ ID NO: 3671 or 197.
  4. 4. A method of producing a crop, comprising growing a crop plant transformed with an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80% homologous to the amino acid sequence set forth in SEQ ID NO: 434, wherein the crop plant is derived from plants which have been transformed with said exogenous polynucleotide and which have been selected for increased yield, increased biomass, increased growth rate, increased vigor, increased nitrogen use efficiency, reduced time to flowering and/or reduced time to inflorescence emergence under non-stress conditions as compared to a wild type plant of the same species which is grown under the same growth conditions, and the crop plant has the increased yield, increased biomass, increased growth rate, increased vigor, increased nitrogen use efficiency, reduced time to flowering and/or reduced time to inflorescence emergence under the non-stress conditions, thereby producing the crop.
  5. 5. A method of producing a crop, comprising growing a crop plant transformed with an exogenous polynucleotide comprising a nucleic acid sequence encoding a polypeptide at least 80% homologous to the amino acid sequence set forth in SEQ ID NO: 434, wherein the crop plant is derived from plants which have been transformed with said exogenous polynucleotide
    430
    2018271407 27 Apr 2020 and which have been selected for increased tolerance to salinity stress as compared to a wild type plant of the same species which is grown under the same growth conditions, and the crop plant has the increased tolerance to salinity stress, thereby producing the crop.
  6. 6. The method of claim 4 or claim 5, wherein said exogenous polynucleotide comprises a nucleic acid sequence at least 80% identical to SEQ ID NO: 3671 or 197.
  7. 7. A nucleic acid construct comprising an isolated polynucleotide comprising a nucleic acid sequence encoding a polypeptide which comprises an amino acid sequence at least 85% identical to the amino acid sequence set forth in SEQ ID NO: 434, and a heterologous promoter operably linked to said isolated polynucleotide, wherein said nucleic acid sequence is capable of:
    (i) increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency of a plant under non-stress conditions;
    (ii) reducing time to flowering and/or to inflorescence emergence of a plant under non-stress conditions; and/or (iii) increasing tolerance of a plant to salinity stress.
  8. 8. The nucleic acid construct of claim 7, wherein said isolated polynucleotide comprises a nucleic acid sequence at least 85% identical to SEQ ID NO: 3671 or 197.
  9. 9. An isolated polypeptide comprising an amino acid sequence at least 85% identical to SEQ ID NO: 434, wherein said amino acid sequence is capable of:
    (i) increasing yield, biomass, growth rate, vigor, and/or nitrogen use efficiency of a plant under non-stress conditions, (ii) reducing time to flowering and/or to inflorescence emergence of a plant under non-stress conditions, and/or (iii) increasing tolerance of a plant to salinity stress.
  10. 10. A transgenic plant cell comprising the nucleic acid construct of claim 7 or claim 8.
  11. 11. A transgenic plant comprising the cell of claim 10, or the nucleic acid construct of claim 7 or claim 8.
    431
    2018271407 27 Apr 2020
  12. 12. A method of selecting plants having increased yield, biomass, growth rate, vigor, and/or nitrogen use efficiency, and/or reduced time to flowering and/or time to inflorescence emergence under non-stress conditions, or increasing tolerance to salinity stress, the method comprising selecting plants transformed with the nucleic acid construct of claim 7 or claim 8 for an increased trait as compared to a native plant which is grown under the same growth conditions, wherein said trait is selected from the group consisting of: yield under non-stress conditions, biomass under non-stress conditions, growth rate under non-stress conditions, vigor under non-stress conditions, salinity stress tolerance, nitrogen use efficiency under non-stress conditions, reduced time to flowering under non-stress conditions and/or reduced time to inflorescence emergence under non-stress conditions.
  13. 13. The method of any one of claims 1, 2, 4, 5 and 12, the nucleic acid construct of claim 7, the isolated polypeptide of claim 9, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said polypeptide is at least 90% identical to SEQ ID NO: 434.
  14. 14. The method of any one of claims 1, 2, 4, 5, and 12, the nucleic acid construct of claim 7, the isolated polypeptide of claim 9, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said polypeptide is at least 95% identical to SEQ ID NO: 434.
  15. 15. The method of any one of claims 1, 2, 4, 5, and 12, the nucleic acid construct of claim 7, the isolated polypeptide of claim 9, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said polypeptide is selected from the group consisting of SEQ ID NOs: 434, and 3427-3468.
  16. 16. The method of any one of claims 1, 2, 4, 5, and 12, the nucleic acid construct of claim 7, the isolated polypeptide of claim 9, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said polypeptide is set forth in SEQ ID NO: 434.
  17. 17. The method of claim 3 or claim 6, the nucleic acid construct of claim 8, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said nucleic acid sequence is at least 90% identical to the polynucleotide set forth in SEQ ID NO: 3671.
    432
    2018271407 27 Apr 2020
  18. 18. The method of claim 3 or claim 6, the nucleic acid construct of claim 8, the plant cell of claim 10, or the transgenic plant of claim 11, wherein said nucleic acid sequence is selected from the group consisting of SEQ ID NOs: 3671, 197 and 1920-1961.
  19. 19. The method of any one of claims 1-6, and 12, further comprising growing the plant under nitrogen-limiting conditions.
  20. 20. The method of any one of claims 1-6, and 13-18, further comprising selecting said plant for an increased trait as compared to a native plant of the same species which is grown under the same growth conditions, said trait being selected from the group consisting of: yield under non-stress conditions, biomass under non-stress conditions, growth rate under non-stress conditions, salinity stress tolerance, nitrogen use efficiency under non-stress conditions, and/or for a reduced time to flowering or time to inflorescence emergence under non-stress conditions.
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