AU2016312685A1 - Compositions and methods for treatment of pain - Google Patents

Abstract

Embodied herein are engineered fusion proteins that bind and target nociceptor neurons, compositions comprising these engineered fusion proteins, and methods for treatment of pain using these engineered fusion proteins or compositions containing the engineered fusion proteins. The engineered fusion proteins contain domains derived from protein toxins such as the anthrax toxin, clostridial botulinum family of toxins, disulphide-containing toxins, and AB component type toxins.

Description

FIELD OF THE INVENTION [0003] We describe novel compositions and methods for treatment of pain.

BACKGROUND OF THE INVENTION [0004] Pain in chronic disease conditions including osteoarthritis, rheumatoid arthritis, muscle spasticity, and cancer is a major socioeconomic burden, for which few effective treatments are available.

[0005] Current chronic pain therapies such as opioids are mostly ineffective or have major offtarget effects such as addictiveness due to action on other neuronal subtypes.

[0006] Nociceptor sensory neurons mediate the detection of harmful/injurious stimuli, and their aberrant activation produces chronic pain. These neurons are dysregulated in muscle spasticity that may contribute to overactive sensori-motor reflexes, and also innervate joints affected in osteoarticular conditions to mediate pain.

SUMMARY OF THE INVENTION [0007] The present invention provides novel compositions and methods for treatment of pain. The invention is based, at least in part, on our discovery that pain-sensing nociceptor neurons specifically express high levels of ANTXR2 (also known as CMG2), a receptor for anthrax toxin, while this receptor is not substantially expressed by other neuron subtypes. By using the endosomal delivery mechanisms inherent to anthrax toxin, we can specifically deliver molecular cargo into nociceptors that would result in pain-specific block without causing other neurological side effects. For examples, the molecular cargoes can be intracellularly acting toxins that inhibit or block cell signaling pathways in vivo or inhibit or block the release of synaptic neurotransmitters.

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PCT/US2016/049106 [0008] Accordingly, we provide, in one aspect, a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, which binding site is capable of undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron, and wherein the nociceptor neuron expresses the SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain.

[0009] In another aspect, provided herein is a composition comprising a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, which binding site is capable of undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron, and wherein the nociceptor neuron expresses the SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain.

[0010] By heterologous origin means that the parts (a), (b), and (c) of the fusion protein are not from the same protein. As used herein, the phrase “capable of cleaving” means cleaving. Nonlimiting examples of a non-cytotoxic protease that cleaves a SNARE protein in a nociceptor neuron are the BTx (serotypes included), TTx, and the non-Clostridial botulinum-like toxins described herein.

[0011] In one embodiment of all the aspects described herein, a fusion protein composition can further comprise a pharmaceutically acceptable carrier or excipient.

[0012] In one embodiment of a fusion protein or a composition described herein, the fusion protein further comprising a protease cleavage site at which site the fusion protein is cleavable by a protease, wherein the protease cleavage site is located C-terminal of the non-cytotoxic protease in the fusion protein. Proteases suitable for cleaving include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

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PCT/US2016/049106 [0013] In one embodiment of a fusion protein or a composition described herein, the noncytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a nonClostridial botulinum-like toxin. See Table 1 for non-limiting examples of the clostridial neurotoxin L-chain suitable for use in constructing the engineered fusion proteins described herein.

[0014] In one embodiment of a fusion protein or a composition described herein, the L chain is selected from the BTx light chain of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/Ε, BTx/F, or BTx/G, and first non-Clostridial botulinum-like toxin. In one embodiment of a fusion protein or a composition described herein, the L chain is selected from the BTx or TTx light chain disclosed in Table 1.

[0015] In one embodiment of a fusion protein or a composition described herein, the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx). See Table 1. For example, the BTx is BTx/A, BTx/B, BTx/C, BTx/D, BTx/Ε, BTx/F, or BTx/G [0016] In one embodiment of a fusion protein or a composition described herein, the TL comprises a clostridial neurotoxin translocation domain (also known as the H_N domain of the clostridial neurotoxin) or a non-Clostridial botulinum-like toxin translocation domain.

[0017] In one embodiment, the translocation domain comprises a H_N described in Table 1. In one embodiment of a fusion protein or a composition described herein, the H_N is selected from the BTx Hn domain of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/Ε, BTx/F, or BTx/G, and first non-Clostridial botulinum-like toxin.

[0018] In one embodiment of a fusion protein or a composition described herein, the H_N is selected from the BTx H_N domain disclosed in Table 1.

[0019] In one embodiment of a fusion protein or a composition described herein, the TM binds to the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

[0020] In one embodiment of a fusion protein or a composition described herein, the TM is an anthrax toxin protective antigen (PA) or a C-terminal receptor-binding domain of PA or a PA fragment thereof that retains binding activity to ANTXR2 (e.g., PAd4) or a nociceptor neuron binding protein.

[0021] In one embodiment of a fusion protein or a composition described herein, the nociceptor neuron binding protein is an antibody, e.g., an antibody that binds to a receptor or ion channel on the cell surface of a nociceptor neuron. For example, the receptor on the cell surface of a

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PCT/US2016/049106 nociceptor neuron is ANTXR2 or NGFR. For example, the ion channel on the cell surface of a nociceptor neuron is Navi.7, Navi.8 or Navi.9.

[0022] In one embodiment of a fusion protein or a composition described herein, wherein the PA is a mutant or variant PA resistant to furin cleavage. For example, the furin cleavage site comprising amino acid residues RKKR has been replaced by a furin-resistant amino acid sequence. For example, the furin-resista-nt amino acid sequence is SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33) or RRSS (SEQ ID NO: 149). RKKR are the residues 164-167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO: 1.

[0023] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2d4, and PAd4.

[0024] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAdl domain that is involved in calcium binding and also LF and EF binding. PAdl is located at residues 1-258 of PA (SEQ. ID. NO:1).

[0025] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd2 that is involved in membrane insertion and heptamerization.

[0026] In one embodiment, PAd2 is located at residues 259-487 of PA (SEQ. ID. NO: 1).

[0027] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd3 that is involved in oligomerization. PAd3 is located at residues 488-594 of PA (SEQ. ID. NO: 1).

[0028] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd4 that is involved in host cell receptor binding. In one embodiment, PAd4 is located at residues 595-735 of PA (SEQ. ID. NO:1).

[0029] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd3 and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 488-735 of PA (SEQ. ID. NO:1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 488-764 of PA (SEQ. ID. NO:1).

[0030] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2 and the

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PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-735 of PA (SEQ. ID. NO:1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-764 of PA (SEQ. ID. NO:1).

[0031] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2, PAd3, and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-735 of PA (SEQ. ID. NO:1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-764 of PA (SEQ. ID. NO:1).

[0032] In one embodiment of a fusion protein or a composition described herein, the TM comprises more than one PAd4 domain, e.g., 2, 3, 4, 5, 6, 7, 8, 9 or up to 10 PAd4 domains. In one embodiment, the multiple PAd4 domains are arranged in tandem, and can be linked by peptide linkers described herein.

[0033] In one embodiment of a fusion protein or a composition described herein including a PAd4 domain, the fusion protein comprises 2-10 PAd4 domains in tandem.

[0034] In one embodiment of a fusion protein or a composition described herein including a PAd4 domain, e.g., a PAd4, a PA or a C-terminal receptor binding domain of PA, one or more of the Lys residues in the PAd4 domain at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 has been replaced by Arg or His, wherein the numbering refers to that of SEQ ID NO: 1 after minusing the 29 aa signal peptide in SEQ. ID. NO: 1.

[0035] In one embodiment of a fusion protein or a composition described herein including a PAd4 domain,, e.g., a PA or a C-terminal receptor binding domain of PA, one or more of the Lys residues in the PAd4 domain at positions 623, 642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:lhas been replaced, for example, by Arg or His. [0036] In one aspect, a fusion protein comprising: (a) a botulinum neurotoxin (BTx) or a tetanus neurotoxin (TTx), and (b) an anthrax toxin protective antigen (PA), or a C-terminal receptorbinding domain of PA, wherein part (a) and (b) are linked or fused together. The term “fusion protein” is used interchangeably with the term “chimeric protein” herein.

[0037] In one embodiment, the BTx or TTx comprises a BTx or TTx enzymatic moiety and translocation peptide or domain.

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PCT/US2016/049106 [0038] In one embodiment, the BTx moiety or translocation peptide/domain is selected from the BTx light chain and heavy chain domains of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, BTx/G, and a non-Clostridial botulinum-like toxin. The back slash followed by an alphabet (/A, /B, /C, etc) denotes the various serotypes within the Clostridium botulinum family. [0039] In one embodiment, the BTx or TTx enzymatic moiety or translocation peptide/domain is selected from the enzymatic moieties and translocation domain of the Btx or TTx toxins provided in Table 1.

[0040] In another aspect, provided herein is a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA or PA fragment thereof binds a receptor expressed on the nociceptor neuron. In other words, the fusion protein here cleaves a SNARE protein.

[0041] In one embodiment, the non-cytotoxic protease comprises a clostridial neurotoxin Lchain. In one embodiment, the clostridial neurotoxin is botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx).

[0042] In one embodiment, the BTx is selected from any one of BTx /A, BTx /B, BTx /C, BTx /D, BTx ZE, BTx ZF, BTx /G, and a non-Clostridial botulinum-like toxin.

[0043] In one embodiment, the clostridial neurotoxin L-chain is selected from the L-chains of the clostridial neurotoxins provided in Table 1. In one embodiment, the clostridial neurotoxin L-chain is selected from SEQ. ID. NOS: 20-28.

[0044] In another aspect, provided herein is a fusion protein comprising (a) a disulfidecontaining peptide toxin which is capable of blocking ion channels in a nociceptor neuron; and (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses the ion channels therein (e.g., sodium or calcium or both sodium and calcium channels). In other words, the disulfide-containing peptide toxin here blocks ion channels in a nociceptor neuron and the TM binds to a binding site on the nociceptor neuron.

[0045] In another aspect, provided herein is a fusion protein comprising: (a) a disulfidecontaining peptide toxin which is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment that binds a receptor expressed on the nociceptor neuron. In other words, the disulfide-containing peptide toxin here blocks sodium or calcium or

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PCT/US2016/049106 both types of channels in a nociceptor neuron and the part (b) is a protein that binds to an anthrax toxin protective antigen (PA) or a PA fragment that binds a receptor expressed on the nociceptor neuron.

[0046] In one embodiment, the disulfide-containing peptide toxin comprised by a fusion ptotein described herein comprises a cysteine knot motif.

[0047] In one embodiment, the disulfide-containing peptide toxin comprised by a fusion ptotein described herein is a conotoxin, an agatoxin, a delta paulutoxin, a huwentotoxin or a ProTx II toxin.

[0048] In one embodiment, the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

[0049] In one embodiment, the PA or C-terminal receptor-binding domain of PA binds the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

[0050] In one embodiment, the TM is selected from the group consisting of: (i) an anthrax toxin protective antigen (PA); (ii) a C-terminal receptor-binding domain of PA; and (iii) a nociceptor neuron-binding protein.

[0051] In one embodiment, the PA is a mutant PA that is resistant to furin cleavage.

[0052] In one embodiment, the C-terminal receptor-binding domain of PA is PA63 or PAd4. [0053] In one embodiment, the PAd4, the PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 is modified or mutated.

[0054] In one embodiment, the PAd4, the PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 is resistant to cleavage by a protease, such as Lys C. [0055] In one embodiment, the nociceptor neuron-binding protein is an antibody.

[0056] In one embodiment, the antibody specifically binds to the nerve growth factor (NGF) receptor, the ANTXR2 receptor, or an ion-channel protein present on nociceptor neurons.

[0057] In one embodiment, the ion-channel protein is selected from Navi .7, Navi .8 or Navi .9. [0058] In one embodiment, the protein capable of binding to PA is an anthrax toxin lethal factor (LF) or an anthrax toxin edema factor (EF). In other words, the protein here binds PA and is an LF or EF.

[0059] In one embodiment, the PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

[0060] In one embodiment, the PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

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PCT/US2016/049106 [0061] In another aspect, provided herein is a fusion protein comprising: (a) an AB toxin; (b) an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA or fragment thereof binds a receptor expressed on a nociceptor neuron; and (c) a translocation domain (TL) that is capable of translocating the toxin (a protease) from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron. In other words, the TL translocates the toxin into the cytosol of the nociceptor neuron.

[0062] In one embodiment, the AB toxin is selected from Ricin toxin, Cholera toxin A-part and B-part; Pseudomonas aeruginosa Exotoxin A A-part and B-part; Shiga toxin A-part and B-part; and Diphtheria toxin A-part and B-part.

[0063] In one embodiment, the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

[0064] In one embodiment, the PA fragment is a C-terminal receptor-binding domain of PA. [0065] In one embodiment, the TL is a translocation domain derived from a clostridial neurotoxin, or is a holotoxin; or is a mutant form of the holotoxin that has been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin.

[0066] In another aspect, provided herein is a fusion protein comprising a botulinum neurotoxin (BTx) moiety comprising an N-terminal enzymatic domain (LC or L chain) and an intermediate pore-forming/translocation-domain (H_N) of the BTx, linked to a C-terminal receptor-binding domain of anthrax toxin protective antigen (PA). The C-terminal receptor-binding domain of anthrax toxin protective antigen can be, for example, a PAd4 domain.

[0067] In one embodiment, the fusion protein further comprises a linker peptide between the BTx moiety and the C-terminal receptor-binding domain of anthrax toxin protective antigen or PAd4 domain.

[0068] In another aspect, provided herein is a fusion protein comprising: (a) a botulinum neurotoxin N-terminal enzymatic domain of a botulinum neurotoxin (BTx) moiety, and (b) an N-terminal domain of anthrax toxin lethal factor (LFn), which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA; or the N-terminal domain of anthrax toxin edema factor (EFn), which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA, wherein part (a) is linked N-terminally or C-terminally or both Nterminally and C-terminally to part (b).

[0069] In one embodiment of any of the fusion proteins including a BTx moiety, the fusion protein can further comprise an amino acid sequence defining a belt corresponding to the N8

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PCT/US2016/049106 terminal part of the BTx H_N domain, wherein the H_N of the BTx is located at the C-terminal side of the BTx moiety. The presence of the belt stabilizes the L chain.

[0070] In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of the L chain and the H_N domain of BTx, the S-S bridge between the L chain and the H_N domain is not reduced.

[0071] In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of the L chain and not the H_N domain of BTx, the Cys residues in the L chain and the belt corresponding to the N-terminal part of the BTx H_n domain, if present, can be changed to Ala, Ser, or Thr.

[0072] In one embodiment, for a fusion protein comprising a BTx L moiety and an LFn or EFn domain, the fusion protein further comprises a linker peptide between the BTx L moiety and the LFn or EFn domain.

[0073] In another aspect, provided herein is a fusion protein comprising anthrax toxin protective antigen (PA), an anthrax toxin protective antigen C-terminal receptor binding domain (PAd4), or a nociceptor neuron-binding protein, linked to a disulfide-containing peptide toxin. In one embodiment, the disulfide-containing peptide toxin is an inhibitor cysteine knot toxin.

[0074] In one embodiment, the fusion protein further comprises a linker peptide between the PA, PAd4 or nociceptor-binding protein and the disulfide-containing peptide toxin (e.g., the inhibitor cysteine knot toxin).

[0075] In another aspect, provided herein is a fusion protein comprising a disulfide-containing peptide toxin operably linked N-terminally or C-terminally or both N-terminally and Cterminally, or chemically crosslinked at one or more sites, to the N-terminal domain (LFn) of anthrax toxin lethal factor, which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA; or the N-terminal domain (EFn) of anthrax toxin edema factor, which domain binds to oligomeric forms of PA63.

[0076] In one embodiment of any fusion protein described in which a toxin is fused to LFn or EFn, the fusion protein further comprises a linker peptide between the LFn and the toxin or the EFn and the toxin.

[0077] In another aspect, provided herein is a fusion protein comprising an AB toxin fused to a linker peptide linked to a C-terminal receptor-binding domain of anthrax toxin protective antigen (PAd4 domain), wherein the fusion protein further comprises a translocation domain, a

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PCT/US2016/049106 holotoxin, or a mutant form of the holotoxin that have been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin.

[0078] In one embodiment of any fusion protein including an AB toxin, the AB toxin is selected from Ricin toxin, Cholera toxin A-part and B-part, Pseudomonas aeruginosa Exotoxin A A-part and B-part, Shiga toxin A-part and B-part, and Diphtheria toxin A-part and B-part.

[0079] In another aspect, provided herein is a fusion protein comprising an N-terminal enzymatic domain (Chain A) together with a translocation/pore-forming domain from a Clostridial neurotoxin or a non-Clostridial botulinum-like toxin, linked to a C-terminal receptorbinding domain of anthrax toxin protective antigen (PAd4 domain). Examples of a Clostridial neurotoxin is tetanus neurotoxin (frequently abbreviated as TTx or TeNT in scientific literatures).

[0080] In one embodiment, the fusion protein further comprises a linker peptide between the TTx moiety and the PAd4 domain.

[0081] In one embodiment of any fusion protein described as having a linker, the linker peptide is 1-20 amino acids long.

[0082] In one embodiment of any fusion protein described as having a linker, the linker peptide is stable in human serum for at least 1 minute.

[0083] In one embodiment of any fusion protein described as having a linker, the linker peptide comprises at least one amino amino acid that is Gly or Ser.

[0084] In one embodiment of any fusion protein described as having a linker, the linker peptide does not comprise Lys and/or Arg.

[0085] In one embodiment of any fusion protein described that includes a BTx moiety, the BTx moiety is selected from the BTx light chain and heavy chain domains of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, BTx/G. For examples, the the BTx light chain and heavy chain domains are selected from SEQ ID NO: 29-31 or Table 1 described herein. It is specifically contemplated that a non-Clostridial botulinum-like toxin can also be used.

[0086] In one embodiment of any fusion protein described as including a PAd4 domain, the fusion protein comprises 2-10 PAd4 domains in tandem.

[0087] In one embodiment of any fusion protein described as including a PAd4 domain and a BTx moiety, about 1-60 consecutive amino acids from the N-terminal side of PA adjacent to the native PAd4 domain are further incorporated between the BTx moiety and the PAd4.

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PCT/US2016/049106 [0088] In one embodiment of any fusion protein described as including a PAd4 domain and an AB toxin, about 1-60 consecutive amino acids from the N-terminal side of PA adjacent to the native PAd4 domain are further incorporated between the AB toxin and the PAd4.

[0089] In one embodiment of any fusion protein described as including a PAd4 domain, e.g., a PAd4, a PA or a C-terminal receptor binding domain of PA, one or more of the Lys residues in the PAd4 domain at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 has been replaced by Arg or His, wherein the numbering refers to that of SEQ ID NO: 1 after minusing the 29 aa signal peptide in SEQ. ID. NO: 1. In other words, one or more, up to and including each of the Lys residues in the PAd4 domain of the PA at positions 623,

642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1 can be replaced, for example, by Arg or His.

[0090] In one embodiment of any fusion protein described as including a PAd4 domain, one or more of the Lys residues in the PAd4 domain at positions 623, 642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1 has been replaced, for example, by Arg or His.

[0091] In one embodiment of any fusion protein described as including an entire PA protein, the furin cleavage site of PA comprising amino acid residues ¹⁶⁴RKKR¹⁶⁷ of SEQ ID NO: 1 (minus the 29 residue signal peptide in SEQ. ID. NO: 1) has been replaced by a furin-resistant amino acid sequence. In one embodiment, the furin-resistant amino acid sequence is SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33), or RRSS(SEQ ID NO: 149).

[0092] In one embodiment of any fusion protein described as including a PAd4 domain, one or more of the Asn residues in the PAd4 domain at position 601,713, 719 of SEQ ID NO: 1 (minus the 29 aa signal peptide in SEQ. ID. NO:1) has been replaced by Asp.

[0093] In one embodiment of any fusion protein described herein, the fusion protein further comprises at least one D-amino acid at the N-terminus of the fusion protein.

[0094] In one embodiment of any fusion protein that includes all or part of a BTx L chain and H chain, the residue corresponding to an L chain junction of BTx with an H chain of BTx has been cleaved.

[0095] In one embodiment of any fusion protein that includes a nociceptor neuron-binding protein, the nociceptor neuron-binding protein is an antibody. In one embodiment, the antibody specifically binds to NGF receptor or an ion-channel protein present on nociceptor neurons. In one embodiment, the ion-channel protein is selected from Navi.7, Navi.8 or Navi.9.

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PCT/US2016/049106 [0096] In another aspect, provided herein is a composition comprising any one of the fusion proteins described in the preceding paragraphs. In one embodiment, the composition further comprises a pharmaceutically acceptable carrier, excipient or diluent.

[0097] In one embodiment of any composition described, the composition further comprises a native anthrax toxin protective antigen (PA). In one embodiment, the PA is an oligomeric PA. In one embodiment, the oligomeric PA is bound to the fusion protein.

[0098] In another aspect, provided herein is a nucleic acid encoding any of the fusion proteins described herein.

[0099] In another aspect, provided herein is a vector comprising the nucleic acid described in the preceding paragraph. For examples, the vector is a plasmid, a bacteriophage, a cosmid, a viral particle, or a viral vector. For example, the plasmid is an expression plasmid for recombinant protein expression in a bacteria, e.g., Escherichia coli. In another aspect, provided herein is a viral particle comprising a vector comprising a nucleic acid described in the preceding paragraph. In another aspect, provided herein is a viral particle comprising a a nucleic acid described in the preceding paragraph.

[0100] In another aspect, provided herein is a cell comprising the nucleic acid described herein or the vector of described herein. For example, an E. coli carrying a plasmid that comprises a nucleic acid encoding a fusion protein described herein. For example, for the recombinant protein expression of the a fusion protein encoded in the nucleic acid. In another aspect, provided herein is a cell comprising a viral particle comprising a vector comprising a nucleic acid described in the preceding paragraph. In another aspect, provided herein is a cell comprising a viral particle comprising a a nucleic acid described in the preceding paragraph. [0101] In another aspect, provided herein is a method of producing a fusion protein, the method comprising culturing the cell described herein above under conditions such that the fusion protein is expressed, and recovering the fusion protein.

[0102] In another aspect, provided herein is a fusion protein produced by the method described in the preceding paragraph.

[0103] In one embodiment, any of the fusion proteins described herein, or a fusion protein produced by a method described herein, is glycosylated. In another embodiment, any of the fusion proteins described herein, or a fusion protein produced by a method described herein, is non-glycosylated.

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PCT/US2016/049106 [0104] In one embodiment of the method described for producing a fusion protein, the cell is a prokaryotic cell such as bacteria. In one embodiment of the method described for producing a fusion protein, the cell is a bacteria cell. In one embodiment, the bacteria is Escherichia coli (E. Coli). In another embodiment, the bacteria is an attenuated Bacillus anthracis strains, e.g., CDC 684. In one embodiment of the method described for producing a fusion protein, the cell is a yeast cell. In one embodiment, the yeast is Saccharomyces cerevisiae.

[0105] In one embodiment of the method described for producing a fusion protein, the yeast cell is glycosylation deficient.

[0106] In one embodiment of the method described for producing a fusion protein, the yeast cell is glycosylation and protease deficient.

[0107] In one embodiment of the method described for producing a fusion protein, the cell is a mammalian cell. In one embodiment, the mammalian cell is a COS cell, a CHO cell, or an NSO cell.

[0108] In one embodiment, provided herein is the use of any of the fusion proteins described herein for the treatment of pain.

[0109] In one embodiment, provided herein is the use of any of the fusion proteins described herein for the manufacture of medicament for the treatment of pain.

[0110] In another aspect, provided herein is an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (PAd4) fused with an inhibitor cysteine knot (ICK) toxin, e.g., a Conotoxin (CTx).

[0111] In another aspect, provided herein is an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with an inhibitor cysteine knot (ICK) toxin and a Protective-Antigen (PA) moiety. In another aspect, provided herein is an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with a L chain of a Clostridial neurotoxin and a Protective-Antigen (PA) moiety. In one embodiment, this fusion protein can further comprise the belt of the H chain of the Clostridial neurotoxin, the belt is the N-terminal segment of the H chain. In another aspect, provided herein is an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with an intracellur acting toxin (e.g., an AB type toxin) and a Protective-Antigen (PA) moiety.

[0112] In another aspect, provided herein is an engineered fusion protein comprising a mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptorbinding function, fused with a molecule capable of specifically targeting a nociceptor surface

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PCT/US2016/049106 receptor or a nociceptor ion channel receptor, and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA. In other words, the molecule specifically targets a nociceptor surface receptor or a nociceptor ion channel receptor.

[0113] In another aspect, provided herein is an engineered fusion protein comprising an anthrax protective antigen (PA) moiety fused with a molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel receptor, and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA. In some embodiments of any of the aspects described herein, PA can be further engineered to enhance binding to one or more receptors. In other words, the molecule specifically targets a nociceptor surface receptor or a nociceptor ion channel receptor.

[0114] In one embodiment, the molecule capable of specifically targeting or the molecule that specifically targets a nociceptor surface receptor or a nociceptor ion channel receptor is selected from an antibody, or antibody mimetic, that specifically binds to the NGF receptor, or an antibody or antibody mimetic that specifically binds to Navi.7, Navi.8 or Navi.9. In some embodiments of any of the aspects described herein, molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel can be further engineered to enhance binding to one or more receptors.

[0115] In one embodiment, wherein the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx), tetanus toxin (TTx),shiga toxin, ricin toxin, anthrax lethal toxin (lethal factor, LF), and/or anthrax edema toxin (edema factor, EF).

[0116] In another aspect, provided herein is an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), wherein the mPA has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function, and a molecule that can target nociceptor neuron surface molecules, specifically in combination with anthrax toxin edema factor (EF) and/or anthrax lethal factor (LF).

[0117] In one embodiment of an engineered fusion protein of any of the preceding paragraphs, the PA or mPA is in a covalent or noncovalent oligomeric form. In one embodiment, the oligomeric form is bound to the molecule, e.g., covalently or noncovalently.

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PCT/US2016/049106 [0118] In another aspect, provided herein is a composition comprising an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (PAd4) fused with an inhibitor cysteine knot (ICK) toxin , e.g. a Conotoxin (CTx). [0119] In another aspect, provided herein is a composition comprising an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn), fused with an inhibitor cysteine knot (ICK) toxin (e.g., a conotoxin (CTx)) and a Protective-Antigen (PA) moiety.

[0120] In another aspect, provided herein is a composition comprising an engineered mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptorbinding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor, or a nociceptor ion channel and an anthrax lethal factor domain (LFn), fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA.

[0121] In another aspect, provided herein is a composition comprising an engineered fusion protein comprising an anthrax protective antigen (PA) moiety fused with a molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel receptor, and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA. In some embodiments of any of the aspects described herein, PA can be further engineered to enhance binding to one or more receptors.

[0122] In one embodiment, the molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel is selected from a NGF, and an antibody that specifically binds to Navi.7, Navi.8 or Navi.9. In some embodiments of any of the aspects described herein, molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel can be further engineered to enhance binding to one or more receptors.

[0123] In another embodiment, the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, anthrax lethal toxin (lethal factor, LF), and/or anthrax edema toxin (edema factor, EF).

[0124] In another aspect, provided herein is a composition comprising an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), wherein the mPA has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function, and a molecule that can target nociceptor neuron surface molecules specifically in combination with anthrax toxin edema factor (EF).

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PCT/US2016/049106 [0125] In one embodiment, the PA or mPA is in an oligomeric form. In one embodiment, the oligomeric form is bound to the molecule.

[0126] In one embodiment, a fusion protein-comprising composition further comprises a pharmaceutically acceptable carrier or excipient.

[0127] In another aspect, provided herein is a method for treatment of pain, the method comprising administering to a subject in need thereof a composition comprising a fusion protein as described herein.

[0128] In another aspect, provided herein is a method of treating pain, the method comprising administering to a subject in need thereof a native mature anthrax toxin protective antigen (PA) and anthrax toxin edema factor (EF), anthrax toxin lethal factor (LF) or any combination thereof. [0129] In another aspect, provided herein is a method for the treatment of nerve, joint, skin, visceral, bladder, or muscle pain, comprising administering peripherally by intradermal injection, subcutaneous injection, intramuscular injection, intraneural injection, or intra-articular injection to a subject in need thereof a composition comprising a fusion protein as described herein.

[0130] In another aspect, described herein is a method for treatment of diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders, comprising administering by epidural injection, intrathecal infusion or intra-cerebroventricular infusion into the central nervous system of a subject in need thereof a composition comprising a fusion protein as described herein.

[0131] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a composition comprising an engineered fusion protein comprising an anthrax toxin ProtectiveAntigen (PA) moiety or its receptor binding domain (PAd4) fused to an intracellularly acting toxin catalytic domain, wherein the engineered fusion protein is delivered to nociceptor neurons and results in decreased intracellular signaling events in the nociceptor neurons or decreased neurotransmitter release from the nociceptor neurons.

[0132] In one embodiment, the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, anthrax lethal toxin (lethal factor), and/or anthrax edema toxin (edema factor)

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PCT/US2016/049106 [0133] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a composition comprising an engineered fusion protein comprising an anthrax toxin ProtectiveAntigen (PA) moiety or its receptor binding domain (Pad4) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

[0134] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective amount of a composition comprising an engineered fusion protein comprising an anthrax toxin lethal factor (LFn) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)) and a Protective-Antigen (PA) moiety. Alternately, treatment of pain is carried out by administering to a subject in need thereof an effective amount of a composition comprising an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with a L chain of a Clostridial neurotoxin and a Protective-Antigen (PA) moiety, or an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with an intracellur acting toxin (e.g., an AB type toxin) and a Protective-Antigen (PA) moiety. In one embodiment, the fusion protein comprising the L chain of a Clostridial neurotoxin can further comprise the belt of the H chain of the Clostridial neurotoxin, the belt is the N-terminal segment of the H chain.

[0135] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain.

[0136] In one embodiment, the molecule is selected from an antibody that specifically binds to the NGF receptor and an antibody that specifically binds to Navi .7, Navi .8 or Navi .9.

[0137] In another embodiment, the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx), tetanus toxin (TTx), shiga toxin, ricin toxin, anthrax lethal toxin (lethal factor), and/or anthrax edema toxin (edema factor).

[0138] In some aspects, any compositions described in the preceding paragraphs or any compositions comprising a fusion protein described in the preceding paragraphs is use for the

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PCT/US2016/049106 treatment of pain. Treatment of pain can include administering more than one, i.e., several, of the different compositions described in the preceding paragraphs.

[0139] In another aspect, described herein is a method of treating pain in a subject in need thereof comprising administering to the subject an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), wherein the mPA has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function and a molecule that can target nociceptor surface molecules specifically in combination with anthrax toxin edema factor (EP) and/or anthrax lethal factor (LF).

[0140] In one embodiment, the PA or mPA is administered in an oligomeric form, wherein the oligomeric PA or mPA is formed from proteolytically activated PA or mPA (or mutant thereof) to achieve increased avidity for receptor-bearing cells. In one embodiment, the oligomeric form is bound to the molecule before administering.

[0141] In one embodiment, the composition is administered separately before, simultaneously, or after administering a composition comprising an anthrax protective antigen (PA), in a pharmaceutically acceptable carrier, excipient or diluent.

[0142] In one embodiment, the administering is performed by intrathecal infusion or intracerebroventricular infusion or by an epidural injection into the central nervous system, or by peripheral administration using intradermal injection, subcutaneous injection, intramuscular injection, intraneural injection, or intra-articular injection.

[0143] In another embodiment, the pain is selected from diabetic neuropathic pain, cancer pain, fibromyalgia, other systemic pain disorders, nerve, joint, skin, visceral, bladder, and muscle pain.

[0144] In another aspect, provided herein is a method of manufacture of a pharmaceutical composition comprising one or more of the fusion proteins described in the preceding paragraphs and a pharmaceutically acceptable carrier or excipient.

[0145] In another aspect, provided herein is a fusion protein described in the preceding paragraphs for use in the manufacture of medicament for the treatment of pain. In one embodiment, the fusion protein is formulated with at least one pharmaceutically acceptable carrier or excipient.

[0146] In another aspect, provided herein is a fusion protein described in the preceding paragraphs for use in the treatment of pain. In one embodiment, the fusion protein is formulated with at least one pharmaceutically acceptable carrier or excipient.

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BRIEF DESCRIPTION OF THE DRAWINGS [0147] Figures 1A-1B demonstrate that Anthrax Toxin Receptor is specifically expressed in the dorsal root ganglia compared to other nervous system tissues. (Figure 1 A) Expression profiling data of 11 nervous tissue types showing that Antxr2 transcript expression is only present in dorsal root ganglia tissues, where nociceptor neurons are found. (Figure IB) In situ hybridization image for Antxr2 showing strong expression in dorsal root ganglia but not surrounding tissues or spinal cord.

[0148] Figure 2 demonstrates that Antxr2 is highly enriched in nociceptor neurons compared to proprioceptor sensory neurons (large dot and arrow). Volcano plot (P-value vs. fold-change of difference) shows Antxr2 is strongly enriched in nociceptor pain-sensing neurons compared to proprioceptor neurons.

[0149] Figure 3 shows that the Protective Antigen (PA) alone does not inhibit protein synthesis in neurons.

[0150] Figure 4 shows that PA alone does not inhibit protein synthesis in neurons.

[0151] Figure 5 shows that protein synthesis inhibition in neurons by the fusion protein LFnDTX is dependent on the presence of PA and that LFn-DTX is able to block protein synthesis intracellularly in nociceptor neurons at picomolar concentrations.

[0152] Figure 6 shows that PA and the fusion protein LFn-DTX inhibit protein synthesis in neurons.

[0153] Figure 7A shows the modular construction of embodiments of BoTX-PA fusion proteins using various domains of BoTX protein and different PA-derived proteins. The PA-derived protein is the Pad4 domain or PA that is resistant to protease cleavage, such as furin protease. [0154] Figure 7B shows the modular construction of embodiments of TTX-PA fusion proteins using various domains of TTX protein and different PA-derived proteins. The PA-derived protein is the Pad4 domain or PA that is resistant to protease cleavage, such as furin protease. [0155] Figure 8A shows the modular construction of embodiments of a fusion proteins comprising BoTX and the PA-binding domains LFn or EFn. The fusion proteins are made using the light chain / catalytic domain from various BoTX serotypes with the PA-binding domain of the two PA-binding proteins, LF and EF.These BoTX-PA-binding fusion proteins are to be used in conjuction with the native PA protein for the treatment of pain.

[0156] Figure 8B shows the modular construction of embodiments of a fusion proteins comprising TTX or other intracellular acting toxins and the PA-binding domains LFn or EFn.

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These fusion proteins are made using the light chain/ catalytic domain of TTX protein or various other intracellular acting toxins, with the PA-binding domain of the two PA-binding proteins, LF and EF.

[0157] Figure 9 shows the modular construction of embodiments of a fusion proteins comprising small disulfide containing toxins or inhibitor cysteine knots (ICK) toxins and a PAderived protein. The PA-derived protein is the Pad4 domain or the PA that is resistant to protease cleavage, such as furin protease.

DETAILED DESCRIPTION OF THE INVENTION [0158] Abbreviations: ANTXR2 (CMG2) = a cell surface receptor for the anthrax toxin; PA = anthrax toxin Protective-Antigen, 83 kDa; PA63 = active 63 kDa of fragment of PA derived from furin cleavage, self-assembles into a ring-shaped heptamer or octamer to form a receptorbound prepore, PA63 prepore binds up to three or four EF, LF, LFn or EFn, forming complexes that are then endocytosed; PAdl = an LF/EF binding component or fragment of PA; PAd2 = a membrane translocation component or fragment of PA, an anthrax-derived translocation domain or peptide; PAd3 = an oligomerisation component or fragment of PA; PAd4 = the host cell receptor binding domain of PA to ANTXR1 and ANTXR2 receptors, PA’s native receptors; PA^funn' = a furin resistant PA with modified or mutated furin-protease recognition site, is incapable of multimerisation and translocation, no binding to LFn or EFn but can still bind host cell receptor; ICK = inhibitor cysteine knot; LFn = N-terminal PA binding domain of anthrax toxin lethal factor, an “anthrax toxin translocation peptide”; EFn = N-terminal PA binding domain of anthrax toxin edema factor, also an “anthrax translocation signal peptide”; LF = anthrax lethal toxin (lethal factor); EF = anthrax edema toxin (edema factor); mPA = a mutant anthrax protective antigen moiety that has been altered to block its native receptor-binding function; Navi .7, Navi .8 or Navi .9 = ion channel proteins; DTx = diphtheria toxin including A and B components of the toxin, DTA = diphtheria toxin only the A components of the toxin, the enzymatic component, the component that is the intracellur acting toxin; PE or PTx = Pseudomonas aeruginosa exotoxin A; BTx or BoTX or BoNT = botulinium toxin; TTx = tetanus toxin; CTx = Conotoxin; CNT = clostridial neurotoxin family; LC or L = 50 kDa light chain of of a neurotoxin member of the clostridial neurotoxin family, L functions as a zincdependent endopeptidase; HC = heavy chain (HC = H_N + He) contains two functional domains, each of ~50 kDa; Hn = N-terminal half of HC, is the translocation domain of a neurotoxin member of the clostridial neurotoxin family. Hn is known to form ion channels in lipid bilayers.

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He = C-terminal half of HC, is the receptor binding domain of a neurotoxin member of the clostridial neurotoxin family; LHn = L + Hn.

[0159] Unless otherwise defined herein, scientific and technical terms used in connection with the present application shall have the meanings that are commonly understood by those of ordinary skill in the art to which this disclosure belongs. It should be understood that this invention is not limited to the particular methodology, protocols, and reagents, etc., described herein and as such can vary. The terminology used herein is for the purpose of describing particular embodiments only, and is not intended to limit the scope of the present invention, which is defined solely by the claims. Definitions of common terms in molecular biology can be found in The Merck Manual of Diagnosis and Therapy, 19th Edition, published by Merck Sharp & Dohme Corp., 2011 (ISBN 978-0-911910-19-3); Robert S. Porter et al. (eds.), The Encyclopedia of Molecular Cell Biology and Molecular Medicine, published by Blackwell Science Ltd., 1999-2012 (ISBN 9783527600908); and Robert A. Meyers (ed.), Molecular Biology and Biotechnology: a Comprehensive Desk Reference, published by VCH Publishers, Inc., 1995 (ISBN 1-56081-569-8); Immunology by Wemer Luttmann, published by Elsevier, 2006; Janeway's Immunobiology, Kenneth Murphy, Allan Mowat, Casey Weaver (eds.), Taylor & Francis Limited, 2014 (ISBN 0815345305, 9780815345305); Lewiris Genes XI, published by Jones & Bartlett Publishers, 2014 (ISBN-1449659055); Michael Richard Green and Joseph Sambrook, Molecular Cloning: A Laboratory Manual, 4th ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., USA (2012) (ISBN 1936113414); Davis et al., Basic Methods in Molecular Biology, Elsevier Science Publishing, Inc., New York, USA (2012) (ISBN 044460149X); Laboratory Methods in Enzymology: DNA, Jon Lorsch (ed.) Elsevier, 2013 (ISBN 0124199542); Current Protocols in Molecular Biology (CPMB), Frederick M. Ausubel (ed.), John Wiley and Sons, 2014 (ISBN 047150338X, 9780471503385), Current Protocols in Protein Science (CPPS), John E. Coligan (ed.), John Wiley and Sons, Inc., 2005; and Current Protocols in Immunology (CPI) (John E. Coligan, ADA M Kruisbeek, David H Margulies,

Ethan M Shevach, Warren Strobe, (eds.) John Wiley and Sons, Inc., 2003 (ISBN 0471142735, 9780471142737), the contents of which are all incorporated by reference herein in their entireties.

[0160] All patents and other publications; including literature references, issued patents, published patent applications, and co-pending patent applications; cited throughout this application are expressly incorporated herein by reference for the purpose of describing and

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PCT/US2016/049106 disclosing, for example, the methodologies described in such publications that might be used in connection with the technology described herein. These publications are provided solely for their disclosure prior to the filing date of the present application. Nothing in this regard should be construed as an admission that the inventors are not entitled to antedate such disclosure by virtue of prior invention or for any other reason. All statements as to the date or representation as to the contents of these documents is based on the information available to the applicants and does not constitute any admission as to the correctness of the dates or contents of these documents.

[0161] The description of embodiments of the disclosure is not intended to be exhaustive or to limit the disclosure to the precise form disclosed. While specific embodiments of, and examples for, the disclosure are described herein for illustrative purposes, various equivalent modifications are possible within the scope of the disclosure, as those skilled in the relevant art will recognize. For example, while method steps or functions are presented in a given order, alternative embodiments may perform functions in a different order, or functions may be performed substantially concurrently. The teachings of the disclosure provided herein can be applied to other procedures or methods as appropriate. The various embodiments described herein can be combined to provide further embodiments. Aspects of the disclosure can be modified, if necessary, to employ the compositions, functions and concepts of the above references and application to provide yet further embodiments of the disclosure. Moreover, due to biological functional equivalency considerations, some changes can be made in protein structure without affecting the biological or chemical action in kind or amount. These and other changes can be made to the disclosure in light of the detailed description. All such modifications are intended to be included within the scope of the appended claims.

[0162] We have identified a novel way to treat pain utilizing pain-sensing nociceptor-specific delivery of molecules that quell pain.

[0163] Skin lesions caused by Bacillus anthracis, the causative agent of anthrax, are characteristically painless. We discovered that pain-sensing nociceptor neurons specifically express high levels of ANTXR2, the receptor for anthrax toxin, while this receptor is not expressed or substantially expressed by other neuron subtypes. Anthrax toxin receptor is also expressed by hematopoietic lineage cells (macrophages, osteoclasts, osteoblasts) involved in joint remodeling. Without wishing to be bound by a theory, we submit that anthrax toxin

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PCT/US2016/049106 silences pain during infection by acting through ANTXR2 on nociceptor sensory neurons, and that it can also be used to target immune cells involved in joint remodeling.

[0164] We have previously described a system of targeted delivery of antigens (U.S. Patent Application Publication No. 20030202989) and proteins (WO2012096926) using different anthrax toxin-based delivery systems, including a system in which anthrax receptor binding to its native target receptor has been ablated (U.S. Patent Application Publication No. 20150044210). In these systems, the pore-forming ability of anthrax toxin was exploited to permit entry of a reagent into a cell. The receptor-binding portion of anthrax toxin was ablated in order to permit engineering of cell-binding specificity as desired by the user.

[0165] In short, the receptor-binding component of anthrax toxin, termed Protective Antigen (PA), binds to ANTXR2, is endocytosed, and subsequently translocates either anthrax Lethal Factor (LF) or anthrax Edema Factor (EF), or both, across the endosomal membrane to the cytosol. As described herein, the inventors have made the surprising discovery that the major anthrax toxin receptor ANTXR2 is highly specific in expression within nociceptive neurons amongst all nervous tissues, i.e., anthrax toxin is preferentially targeted to nociceptive neurons via binding to ANTXR2. The discovery of this preferential binding of the native anthrax toxin permits the use of anthrax toxin and its cytosolic delivery mechanisms to specifically target nociceptive neurons to produce highly specific and efficacious pain blockade. In some embodimentsts of any of the aspects described herein, no receptor binding modifications are needed, as the target neurons express the receptor the anthrax system naturally binds to. In some aspects of any of the embodiments, specificity can be increased and side effects reduced by use of additional ligand-receptor interactions, in concert with the anthrax toxin-ANTXR2 interaction. Here we utilized anthrax toxin as a platform to specifically block chronic pain, silence muscle spasticity, and to target and prevent both pain and joint destruction in osteoarthritis. The methods and compositions described herein diverge from earlier anthraxtoxin delivery systems in utilizing the receptor-binding portion of anthrax toxin to direct delivery to a specific cell type, instead of using only the pore-forming activity of the toxin to permit entry of a reagent to a cell targeted by means independent of any native anthrax toxin binding activity.

[0166] Chronic pain is a major socio-economic burden in society for which few targeted treatments are available. Nociceptor sensory neurons mediate the detection of noxious/injurious stimuli, resulting in pain sensations and avoidance behavior. Sustained activation of nociceptors

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PCT/US2016/049106 during inflammation or following nerve injury leads to chronic pain. We provide uses of proteinaceous toxins to create new targeted molecular entities to treat pain.

[0167] We have found that the anthrax toxin receptor ANTXR2 is highly expressed on nociceptors and specific to these neurons compared to other neuronal subtypes. This finding suggests that we can use the Protective Antigen (PA) moiety of anthrax toxin or its receptorbinding domain (PAd4) as a cellular specificity determinant for creating constructs to kill nociceptors or otherwise block their ability to transmit signals to the central nervous system (CNS).

[0168] The advantage of this surprising strategy is the specificity of targeting peripheral painsensing neurons compared to other pain treatments, which often have off-target effects on other neuronal subtypes.

[0169] We describe engineering intracellularly acting toxins such as anthrax toxin, disulfidecontaining peptide toxins such as inhibitor cysteine knot (ICK) toxins, AB type toxins such as diphtheria toxin (DT), and SNARE targeting toxins such as tetanus toxin (TTx), and/or botulinum toxins (BTx) for use as a targeted painkiller. In some embodiments, these toxins depend on PA mediated delivery of the intracellular enzymatic activity of these toxins into nociceptor neurons.

Toxins and their components, parts and fragments useful for the modular construction of engineered fusion (chimeric) proteins [0170] Anthrax toxin [0171] Anthrax toxin is a trimeric complex of three protein components secreted by virulent strains of the bacterium, Bacillus anthracis. The three protein components are Protective Antigen (PA), Edema Factor (EF), and Lethal Factor (LF). PA is an 83 kDa protein that mediates specific receptor targeting and binding. Upon binding to its receptor, either Tumor Endothelium Marker-8 (TEM8 or “ANTRX1”) or Capillary Morphogenesis Protein 2 (CMG2 or “ANTXR2”), PA83 is proteolytically activated by furin or other furin-like proteases, removing an N-terminal piece (PA20) and leaving the remaining piece (PA63) bound to the receptor. This activates PA enabling it to multimerise to form heptamers/octamers that bind up to 4 EF/LF molecules. PA63 spontaneously oligomerizes to form ring-shaped heptameric or octameric prepores, which contain binding sites capable of binding LF or EF with high nM affinity. LF and EF (each ~90 kDa) have homologous, ~260-residue N-terminal domains that bind the prepores; the enzymatic moieties of LF and EF are C-terminal. The resulting complexes are

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PCT/US2016/049106 internalised by endocytosed and under low pH of the endosome, the PA63 prepore changes conformation, inserts into the membrane and transports bound cargo molecules (LF/EF) to the cytosol, where they refold and catalyze their respective reactions. The LF is zinc dependent endopeptidase that catalyzes the hydrolysis (cleavage) of certain mitogen-activated protein kinase kinases (MAP Kinase/ERK Kinase; also known as MAP Kinase Kinase), and this leads to the disruption of many cellular signalling pathways, which eventually leads to cell death. EF is a calmodulin and calcium dependent adenylate cyclase that increases cAMP to extraordinary levels in cells. Changes in intracellular cAMP affect membrane permeability and may account for edema. In macrophages and neutrophils, an additional effect is the depletion of ATP reserves which are needed for the engulfment process. This is a list of the possible combinations that can occur with the Anthrax Toxin: PA+LF leads to lethal activity; EF+PA leads to edema; EF+LF has no toxic effects on cells; and PA+LF+EF leads to lethal activity and edema in an affected cell. LF consists of an N-terminal PA binding domain (abbreviated herein as “LFPABD” or “LFn”) and a C-terminal proteolytic component. LF acts by cleaving mitogen-activated protein (MAP) kinase kinases. EF consists of an N-terminal PA binding domain (abbreviated herein as “EFPABD” or “EFn”), a central enzymatic component, and a C-terminal calmodulin binding component. EF is a calcium dependent adenylate cyclase that elevates cellular cAMP levels. MAP kinase and cAMP signalling have both been found to be critical in mediating nociceptor signalling.

[0172] PA possesses four major functions distributed across four structurally distinct domains an LF/EF binding component (PAdl), a membrane translocation component (PAd2), an oligomerisation component (PAd3), and a host cell receptor binding component (PAd4).

[0173] As used herein, “anthrax toxin protective antigen” or “PA” refers to a polypeptide that, in oligomeric form, binds specifically and selectively to the ANTXR2 receptors, subsequently forming a pore in the cell membrane and translocating cargo toxins. The sequence of PA is known in the art, e.g., (NCBI Gene ID No: 3361714 (SEQ ID NO: 1; the 29 amino acid residue peptide sequence is the signal peptide: MKKRKVLIPLMALSTILVSSTGNLEVIQA (SEQ. ID. NO: 34) at the N-terminus (NCBI Ref Seq: NP_052806; UNIPROT P13423). The numbering of the amino acid residues can be with reference to SEQ. ID. NO: 1 that has the signal peptide. Alternatively, the numbering of the amino acid residues can be with reference to the PA sequence without the signal peptide. PA binds to host cell surface ANTXR2 receptors and is cleaved by a furin-family protease to an active 63 kDa PA form (PA63) that self-assembles into

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PCT/US2016/049106 a ring-shaped heptamer or octamer to form a receptor-bound prepore. The PA63 prepore binds up to three or four molecules of, e.g., anthrax lethal factor, forming complexes that are then endocytosed. Upon acidification of the endosome, protective antigen prepore undergoes a conformational rearrangement to form a membrane-spanning, ion-conductive pore, which transports anthrax lethal factor and/or anthrax edema factor from the endosome to the cytosol. LFn, the N-terminal domain of anthrax lethal factor, has nanomolar binding affinity for the pore, and this domain (or the corresponding EF domain, EFn) alone can be used for translocation of chemical moieties.

[0174] The furin-family protease cleavage site in ¹⁶⁴RKKR¹⁶⁷, and cleavage occurs between ¹⁶⁷RS¹⁶⁸, the amino acid residue numbering is referenced against SEQ. ID. NO: 1 minus the 29 amino acid signal peptide. To remove the furin site in order to make a furin-resistant PA, RKKR (residues 164-167 of SEQ ID NO: 1 minus the 29 aa signal peptide in SEQ ID NO: 1) can be replaced with SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33), or RRSS (SEQ ID NO: 149) (to eliminate all basic residues). Removal of the furin cleavage site to produce furin resistant PA (PA^funn') will prevent multimerization and translocation.

[0175] As used herein, “anthrax toxin edema factor” or “EF” refers to a calmodulin- and Ca2+dependent adenylyl cyclase, which elevates the level of cAMP within the cell. The sequence of EF is known, e g. NCBI Gene ID: 3361726; SEQ ID NO: 6.

[0176] As used herein, “anthrax toxin lethal factor” or “LF” refers to a metalloprotease that cleaves most members of the MAP kinase family. The sequence of LF is known, e.g., NCBI Gene ID: 3361711; SEQ ID NO: 7. For further discussion of EF and LF, see, e.g., Leppla, 79 PNAS, 3162 (1982); Duesbery et al., 280 Science 734 (1998); Vitale et al., 248 Biochem. Biophys. Res. Commn. 706 (1998); each of which is incorporated by reference herein in its entirety.

[0177] As used herein, “anthrax translocation signal peptide” or “anthrax toxin translocation peptide” refers to a anthrx-derived domain or peptide that, when comprised by and/or linked to a polypeptide, causes that polypeptide to bind to PA or mPA (optionally to PA or mPA in an oligomeric complex) and be translocated by the mature PA/mPA pore to the cytoplasm of a target cell. In some embodiments, the anthrax toxin translocation peptide can be LFn (e.g., amino acids 34-267, 34-293, or 34-297 of SEQ ID NO:7, the full-length LF with its N-terminal signal peptide), EFn (e.g., amino acids 59-277 or 34-290 of SEQ. ID. NO:6), or variants thereof.

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PCT/US2016/049106 [0178] In some embodiments of all the aspects described herein, a small positively charged peptide segment that mimics LFn or EFn can be used to aid in translocating cargo molecules through a PA or mPA pore. These mimics may be composed of at least one non-natural amino acid and are described in more detail in, e.g., International Patent Publication WO 2012/096926; US Patent No: 9079952, and US Patent Application Publications No: US 2013/0336974 and US 2015/0267186, each of which is incorporated by reference herein in its entirety.

[0179] As used herein, “PAd4” or “protective antigen domain 4” refers to the domain of PA that recognizes and binds to host cell cellular receptors (e.g. ANTXR1 and/or ANTXR2). PAd4 can comprise the sequence from about amino acid 621 to about amino acid 764 of SEQ ID NO: 1 (sequence inclusive of the signal peptide. In some embodiments of all the aspects described herein, PAd4 can comprise amino acids 621-764 of SEQ ID NO: 1, which is the amino acid sequence of PA with the signal peptide. In some embodiments of all the aspects described herein, PAd4 can comprise amino acids 596-735 of SEQ ID NO: 1. In one embodiment of all the aspects described herein, PAd4 can comprise amino acids 625-764 of SEQ ID NO: 1. In another embodiment of all the aspects described herein, PAd4 can comprise amino acids 616764 of SEQ ID NO: 1. In another embodiment of all the aspects described herein, PAd4 can comprise amino acids 609-764 of SEQ ID NO: 1. In one embodiment of all the aspects described herein, the PAd4 comprises

RFHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO:

35) . In one embodiment of all the aspects described herein, PAd4 consist essentially of

RFHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO:

36) . In one embodiment of all the aspects described herein, the PAd4 comprises

FHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDG KTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO:

37) . In one embodiment of all the aspects described herein, PAd4 consist essentially of

FHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDG KTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO:

38) . In one embodiment of all the aspects described herein, the PAd4 comprises

GLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIF skkgyeig (SEQ ID NO: 39). In one embodiment of all the aspects described herein, the PAd4 consist essentially of

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GLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIF SKKGYEIG (SEQ ID NO: 40).

[0180] In one embodiment of all aspects of the fusion proteins described herein, the PAd4 is fused or joined to the other protein or toxin by a linker peptide. Examples of linker peptide include: fhydrnniavgadeswkeahrevinssteglllnidkdirkilsgyiveiedte (SEQ ID NO:

41), VEIEDTE (SEQ ID NO: 42), KDIRKILSGYIVEIEDTE (SEQ ID NO: 43), STEGLLLNIDKDIRKILSGYIVEIEDTE (SEQ ID NO: 44), and

VGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTE (SEQ ID NO: 45).

[0181] Examples of linker peptides attached to the N-terminus of PAd4 are shown as follows where the linker peptide sequences are shown in bold:

[0182] FHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRY

DMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKK GYEIG (SEQ ID NO: 46) [0183] VEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTII NPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO: 47) [0184] KDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVN VYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO: 48) [0185] STEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPL YISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO: 49) [0186] VGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLR

QDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG (SEQ ID NO: 50) [0187] SNARE-targeting toxins (including BTx and TTx) [0188] Botulinum neurotoxin (BTx, also abbreviated as BoTX or BoNT) causes botulism which is characterized by descending flaccid paralysis as a result of inhibition of acetylcholine release at the neuromuscular junction. There are seven botulinum neurotoxin serotypes (A-G) produced by bacteria of the genus Clostridium. In addition, botulinum-like neurotoxin from nonClostridium sp. Weissella oryzae SG25T has recently been discovered (Nature Scientific Repo.

Rts | 6:30257 | DOI: 10.1038/srep30257). BTx, with tetanus neurotoxin (TTx) produced by

Clostridium tetani, make up the clostridial neurotoxin (CNT) family. TTx exhibits a high degree of sequence and structural homology to the BTxs, in particular to BTx/B, and is the causative agent of tetanus, which is characterized by spastic paralysis. Although differing in clinical manifestation, the fundamental mode of action - inhibition of neurotransmission - is common to all CNTs. Inhibition of neurotransmitter release by the CNTs is caused by the specific cleavage

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PCT/US2016/049106 of a group of proteins integral to the exocytotic process, the SNARE proteins (soluble NSFattachment protein receptors). Cleavage of one or more of the SNARE proteins leads to a block in the release of vesicular contents to the extracellular environment.

[0189] These SNARE targeting toxins share a similar basic CNT structure. CNTs are synthesized as single-chain polypeptides of-150 kDa (a holotoxin) and are subsequently cleaved to form di-chain molecules made of the light (LC) and heavy chains (HC) that are linked by a single disulfide bond. The 50-kDa LC acts as a zinc-dependent endopeptidase. The heavy chain contains two functional domains, each of-50 kDa. The N-terminal half (H_N) is the translocation domain, known to form ion channels in lipid bilayers, and the C-terminal half (He) is the ganglioside and protein binding domain, which has a key role in binding to the target cell membrane and internalization of the toxin molecules into cholinergic neurons. The three functional domains are structurally distinct and arranged in a linear fashion, such that there is no contact between the LC and HC domains. Overall, BTxs and TTx share -35% sequence identity. The BTx catalytic LC domains share up to 36% sequence identity [2], and the LC domains of BTx/B and TTx have over 50% identity. (See Review “Botulinum and tetanus neurotoxins:structure, function and therapeutic utility” by K. Turton et al., Trends in Biochemistry, 2002, 27:552-558). Proteases suitable for cleaving the holotoxin to form a dichain toxin include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0190] BTx, a neurotoxic protein produced by the bacterium Clostridium botulinum, is expressed as a large, single polypeptide molecule that has three distinct domains - a 50 kDa proteolytic N-terminal end (LC), a 50 kDa translocation domain located in the middle (H_N), and a 50 kDa host cell receptor binding C-terminal end (He). For the toxin to be functional, it must first be proteolytically cleaved to yield a di-chain protein consisting of a light chain (LC) and heavy chain (HC = H_N + He), held together by a single disulfide bond. Proteolytic activation is crucial because after receptor binding and internalisation by endocytosis, subsequent acidification of the endosome is believed to cause a conformational change in the protein, leading to insertion of the H_N domain into the endosomal membrane, formation of a translocation pore and delivery of the LC into the cytoplasm, where the disulphide bond is reduced and the LC released. The LC is a zinc-dependant protease with a highly specific substrate specificity. There are multiple BTx serotypes (A to G) and sub-serotypes (up to 12 for any given serotype). A serotype is based upon the ability of neutralising antibodies to neutralise

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PCT/US2016/049106 botulinum neurotoxin. To date there are 7 serotypes of botulinum neurotoxin that have been identified, labelled A through to G (BTx/A to BTx/G). With the advent of next generation sequencing it has been identified that within serotypes there are subtypes of BoNT, these are defined as toxins with a sequence difference from other toxins of >2.5% at the protein level. To date over 40 subtypes of BoNT have been identified across the seven serotypes. Different serotypes have different substrate specificities - BTx/A and BTx/Ε cleave SNAP-25, serotypes /B, /D, ZF and /G cleave synaptobrevin/VAMP. BTx/C cleaves both SNAP-25 and syntaxin 1 A. These substrates are SNARE (SNAP (Soluble NSF Attachment Protein) Receptor) proteins that play a critical role in neurotransmitter release at the pre-synaptic nerve terminal and are critical to vesicular secretion from all eukaryotic cells.

[0191] The three domains of BTx (LC, H_N, He) are functionally and structurally distinct and the boundaries of each domain for each sub-serotype have been defined in the art. (See Review “Botulinum and tetanus neurotoxins:structure, function and therapeutic utility” by K. Turton et al., Trends in Biochemistry, 2002, 27:552-558; this literature reference is hereby incorporated by reference in its entirety). Each of the 50 kDa domains can function independently from each other, for example, in a chimeric protein. The H_N domain has a “belt” region that wraps around the LC - this is believed to behave as a pseudo-inhibitor and have a chaperone function during LC translocation.The belt regions of the HN of BTx of various serotypes or of TTx are shown in Table 1.

[0192] Derivation of Botulinum Neurotoxin sequences [0193] For BTx and TTx molecules with no published structure, the structural homology modelling tool LOOPP, available at the website of the loopp organization, was used to obtain a predicted structure based on BTx/ΑΙ (3BTA.pdb). From this, as well as a sequence alignment of all BTx subserotypes by Clustal Omega, it was possible to determine the transition point between domains. Clustal BTx sequence alignments are provided at the end of this document for those BTx sero- and sub-types identified to date.

[0194] LH_N = Botulinum neurotoxin catalytic domain (LC) + translocation domain (H_N) [0195] The LH_N domain for each subserotype are known in the art, e.g., L H_N /Al (residues 1872) and LH_N /Bl (residues 1-859).

[0196] LC or L = Botulinum neurotoxin catalytic domain, (50 kDa, pi -6.3-8.1)

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PCT/US2016/049106 [0197] The LC domain for each subserotype has previously been defined in US 2007/0166332 (hereby incorporated by reference in its entirety), e.g., LC/A1 (residues 1-448) and LC/B1 (residues 1-441), and are summarized in Table 1 below.

Table 1

Neurotoxin	Accession Number	LC	Belt	hn
BoNT/Al	A5HZZ9	1-448	449-546	449-872
BoNT/A2	X73423	1-448	449-546	449-872
BoNT/A3	DQ185900	1-444	445-542	445-869
BoNT/A4	EU341307	1-448	449-546	449-872
BoNT/A5	EU679004	1-448	449-546	449-872
B0NT/A6	FJ981696	1-448	449-546	449-872
BoNT/A7	JQ954969	1-448	449-546	449-872
B0NT/A8	KM233166	1-448	449-546	449-872
BoNT/Bl	B1INP5	1-440	441-533	441-859
BoNT/B2	AB084152	1-440	441-533	441-859
BoNT/B3	EF028400	1-440	441-533	441-859
BoNT/B4	EF051570	1-440	441-533	441-859
BoNT/B5	EF033130	1-440	441-533	441-859
B0NT/B6	AB302852	1-440	441-533	441-859
BoNT/B7	JQ354985	1-440	441-533	441-859
B0NT/B8	JQ964806	1-440	441-533	441-859
BoNT/Cl	Pl8640	1-441	442-542	442-867
BoNT/CD	AB200360	1-441	442-542	442-867
BoNT/DC	AB745660	1-445	446-538	446-863
BoNT/D	P19321	1-445	446-538	446-863
BoNT/El	Q00496	1-422	423-515	423-846
BoNT/E2	EF028404	1-422	423-515	423-846
BoNT/E3	EF028403	1-422	423-515	423-846
BoNT/E4	AB088207	1-422	423-515	423-846
BoNT/E5	AB037711	1-422	423-515	423-846
B0NT/E6	AM695759	1-422	423-515	423-846

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Neurotoxin	Accession Number	LC	Belt	hn
BoNT/E7	JN695729	1-422	423-515	423-846
B0NT/E8	JN695730	1-422	423-515	423-846
BoNT/E9	JX424534	1-422	423-515	423-846
BoNT/ElO	KF861917	1-422	423-515	423-846
BoNT/Ell	KF861875	1-422	423-515	423-846
BoNT/E12	KM370319	1-425	426-518	426-849
BoNT/Fl	Q57236	1-439	440-534	440-865
BoNT/F2	GU213209	1-439	440-534	440-865
BoNT/F3	GU213227	1-439	440-534	440-865
BoNT/F4	GU213214	1-439	440-534	440-865
BoNT/F5	GU213211	1-438	439-531	439-862
B0NT/F6	M92906	1-439	440-534	440-864
BoNT/F7	GU213233	1-431	432-524	432-856
BoNT/G	Q60393	1-441	442-538	442-864
BoNT/”H”	KGO15617	1-434	435-528	435-860
TeNT	P04958	1-457	458-556	458-880

The above-identified reference sequences should be considered a guide, as slight variations may occur according to sub-serotypes. By way of example, US 2007/0166332 (hereby incorporated by reference in its entirety) cites slightly different clostridial sequences:

LC (has the catalytic or enzymatic activity against SNAREs):

Botulinum type A neurotoxin: amino acid residues M1-K448 Botulinum type B neurotoxin: amino acid residues M1-K441 Botulinum type Cl neurotoxin: amino acid residues M1-K449 Botulinum type D neurotoxin: amino acid residues M1-R445 Botulinum type E neurotoxin: amino acid residues M1-R422 Botulinum type F neurotoxin: amino acid residues M1-K439 Botulinum type G neurotoxin: amino acid residues M1-K446 Tetanus neurotoxin: amino acid residues M1-A457 H_n domain:

Botulinum type A neurotoxin: amino acid residues A449-K871

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Botulinum type B neurotoxin: amino acid residues A442-S858 Botulinum type Cl neurotoxin: amino acid residues T450-N866 Botulinum type D neurotoxin: amino acid residues D446-N862 Botulinum type E neurotoxin: amino acid residues K423-K845 Botulinum type F neurotoxin: amino acid residues A440-K864 Botulinum type G neurotoxin: amino acid residues S447-S863 Tetanus neurotoxin: amino acid residues S458-V879 [0198] Inhibitor cysteine knot (ICK) toxins [0199] As used herein, “inhibitor cysteine knot toxin” or “ICK toxin” refers to a toxin comprising the cysteine knot motif and which modulates the activity of a receptor and/or ion channel target. An inhibitor cysteine knot (ICK) is a protein structural motif containing three disulfide bridges. Along with the sections of polypeptide between them, two disulfides form a loop through which the third disulfide bond (linking the 3rd and 6th cysteine in the sequence) passes, forming a knot (thus the alternate name knottin). The motif is common in invertebrate toxins such as those from arachnids and molluscs. The motif is also found in some inhibitor proteins found in plants, but the plant and animal motifs are thought to be a product of convergent evolution. The ICK motif is a very stable protein structure which is resistant to heat denaturation and proteolysis. ICK peptide components of venoms target voltage-gated ion channels but members of the family also act as antibacterial and haemolytic agents. Plant ICK proteins are often protease inhibitors. ICK toxins are typically found in the venom of, e.g., cone snails, spiders, and scorpions. In some embodiments, ICK toxins are disulfide-containing peptide toxins. These disulfide-containing peptide toxins have between 30-70 amino acid residue. In some embodiments of any of the aspects described herein, the ICK toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

[0200] Huwentotoxins are 7 types of ICK toxins (HWTX-1, HWTX-III, HWTX-IV, HWTX-X, HWTX-II, HWTX-VII, HWTX-VIII) from Chinese bird spiders that act against voltage-gated calcium channels.

[0201] Delta-palutoxins consist of 4 types of ICK Toxins (IT1, IT2, IT3, IT4) from spiders that act against voltage-gated sodium channels.

[0202] Conotoxins are small, 10-30 residue peptide ICK toxins from cone snails which act on voltage gated calcium and sodium channels. Some of these toxins are known to act

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PCT/US2016/049106 extracellularly to modulate the activity of ion channels. Examples, W-conotoxin GVIA and Wconotoxin MVIIC.

[0203] As used herein, “conotoxin” refers to a toxin produced by the marine cone snail (e.g. the genus Conus). Some conotoxins can modulate ion channel activity. In some embodiments of all the aspects described herein, the conotoxin can be an ion channel modulator. Non-limiting examples of conotoxins can include δ-conotoxin (e.g. NCBI ID: AKD43185; SEQ ID NO: 10; for further discussion see, e.g., Leipold et al. FEBS Letters 2005 579:3881-4, which is incorporated by reference herein in its entirety), which is known to block voltage-dependent sodium channels, μ-conotoxin (e.g. Swiss-Prot ID: P15472.1; SEQ ID NO: 9; for further discussion, see, e.g., Li and Tomaselli. Toxicol. 2004 44:117-122; which is incorporated by reference herein in its entirety) which also blocks voltage-dependent sodium channels, or ωconotoxin Μ VII A (e.g. NCBI ID: ADB93081; SEQ ID NO: 8; for further discussion see, e.g., Nielsen et al. Molecular Recognition 2000 13:55-70, which is incorporated by reference herein in its entirety) (e.g. ziconotide), which is known to block N-type voltage-dependent calcium channels. Additional non-limiting examples of ICK toxins include, e.g., psalmotoxin-1, βTRTX-Tp2a, and purotoxin-1 and are described in the literature (see, e.g., US Patent Publications 20120277166; 20120220539; 20120087969, 20050214903, and 20050143560; Craik et al. Toxicon 2001 39:43-60; Zhu et al. FASEB lournal 2003 17:1765-7; Daly and Craik. Current Opinion in Chemical Biology 2011 15:362-368; Grishin. European lournal of Biochemistry 1999 264: 276-280; Liang et al. Toxicon 2004 43:575-585; Kolmar FEBS lournal 2008 275: 2684-2690; Saez et al. Toxins 2010 2:2851-2871; Vetter et al. Amino Acids 2011 40:15-28; Alewood et al. Australian lournal of Chemistry 2003 56:769-774; King. Expert Opinion on Biological Therapy 2011 11:1469-1484; King et al. Toxicon 2008 52:264-276; Herzig et al. Nucl. Acids Res 2010; Szeto et al. FEBS Letters 2000 470: 203-299; and Bergeron and Bingham. Toxins 2012 4:1082-1119; each of which is incorporated by reference herein in its entirety).

[0204] The following are examples of cysteine knot sequences from ICK toxins that can attach to PAd4, mPA, PA^funn', LFn, EFn, or other nociceptor-binding protein etc for delivery to nociceptor neurons.

[0205] W-conotoxin GVIA: cksxgsscsxtsynccrscnxytkrcy (SEQ ID NO: X) (Modifications: X = Hyp, Disulfide bridge between 1 - 16, 8 - 19, 15 - 26, Tyr-27 = C-terminal amide)

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PCT/US2016/049106 [0206] W-conotoxin MVIIC: ckgkgapcrktmydccsgscgrrgkc (SEQ ID NO: X) (Modifications: Disulfide bridge between 1 - 16, 8 - 20, 15 - 26, Cys-26 = C-terminal amide) [0207] W-Agatoxin IVA:kkkciakdygrckwggtpccrgrgcicsimgtnceckprlimeglgla (SEQ ID NO: X) (Modifications: Disulfide bridge between 4 - 20, 12 - 25, 19 - 36, 27 - 34) [0208] W-Agatoxin TK: ednciaedygkctwggtkccrgrpcrcsmigtncectprlimeglsfa (SEQ ID NO: X) (Modifications: Disulfide bridge between 4 - 20, 12 - 25, 19 - 36, 27 - 34) [0209] Huwentotoxin IV:ecleifkacnpsndqcckssklvcsrktrwckyqi (SEQ ID NO: X) (Modifications: Disulfide bridge: 2-17,9-24,16-31) (Modifications: Ile-35 = C-terminal amide) [0210] ProTx II: ycqkwmwtcdserkccegmvcrlwckkklw (SEQ ID NO: X) (Modifications: Disulfide bridge: 2-16, 9-21, 15-25) [0211] The AB toxins [0212] The AB toxins are two-component protein complexes secreted by a number of pathogenic bacteria. They are named AB toxins due to their components: the A component is usually the active portion, and the B component is usually the binding portion. The A subunit possesses enzyme activity, where the catalytic domain or activity is found, and is transferred to the host cell following a conformational change in the membrane-bound transport B subunit. Among the toxins produced by certain Clostridium spp. are the binary exotoxins. These proteins consist of two independent polypeptides, which correspond to the A/B subunit moieties. The enzyme component (A) enters the cell through endosomes produced by the oligomeric binding/translocation protein (B), and prevents actin polymerisation through ADPribosylation of monomeric G-actin.

[0213] Examples of the A component of the binary toxin family include C. perfringens iota toxin la, C. botulinum C2 toxin CI, and Clostridium difficile ADP-ribosyltransferase. Other homologous proteins have been found in Clostridium spiroforme.

[0214] Examples of the of the B component (aka binding or transport component) binary toxin family include the Bacillus anthracis protective antigen (PA) protein described herein.

[0215] The Diphteria toxin (DT) also is an AB toxin. It inhibits protein synthesis in the host cell through phosphorylation of the eukaryotic elongation factor 2, which is an essential component for protein synthesis. The exotoxin A of Pseudomonas aeruginosa is another example of an AB toxin that targets the eukaryotic elongation factor 2.

Engineered fusion chimeric proteins [0216] BTx/TTx—PAd4/PA fusion proteins

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PCT/US2016/049106 [0217] Encompassed herein is a BTx or TTx fused to PAd4 to allow redirecting the action of TTx or one or another BTx to nociceptors via PAd4 binding. This encompasses a BTx in which the receptor binding domain is replaced by the receptor binding function of anthrax PA. In this construct we replace the C-terminal domain of BTx with the C-terminal receptor-binding domain of PA, PAd4 or PA63, or any PA fragment that can still bind the receptor ANTXR2.

The BTx Light chain (enzymatic moiety is encompassed in the L-chain) and translocation domain (H_N) are linked to a receptor binding domain of PA. (See Figure 7A) The C-terminal receptor-binding domain of PA, e.g., PAd4, will bind the construct/fusion protein to the ANTXR2 receptor on nociceptors and mediate trafficking to the endosome, at which point the BTx pore forming domain (H_N) would insert into the membrane and mediate translocation of the BTx L-chain to the cytosol, where it would cleave a SNARE and block neurotransmitter release. PA will target its receptor ANTXR2 (CMG2), and botulinum toxin H_N domain will trigger poreformation, translocation, and enzymatic moieties to block synaptic function. In some embodiments, this strategy requires botulinum or tetanus toxins to act both extracellularly and intracellularly. In some embodiments, this strategy requires the pre-activation of the toxins by Lys-C enzyme. This approach could apply similarly to the translocation domain in the heavy chain and light chain domains of tetanus toxin. (See Figure 7B). Other proteases suitable for cleaving the junction include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0218] Accordingly, in one aspect, we provide a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, which binding site is capable of undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron, and wherein the nociceptor neuron expresses the SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain. By heterologous origin means that the parts (a), (b), and (c) of the fusion protein are not from the same protein. As used herein, the phrase “capable of cleaving” means cleaving. Non-limiting examples of a non-cytotoxic protease that cleaves a SNARE protein in a nociceptor neuron are the BTx (serotypes included), TTx, and the non-Clostridial botulinum-like toxins described herein.

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PCT/US2016/049106 [0219] In one embodiment, provided herein is a composition comprising a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, which binding site is capable of undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron, and wherein the nociceptor neuron expresses the SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain. By heterologous origin means that the parts (a), (b), and (c) of the fusion protein are not from the same protein. As used herein, the phrase “capable of cleaving” means cleaving. Non-limiting examples of a non-cytotoxic protease that cleaves a SNARE protein in a nociceptor neuron are the BTx (serotypes included), TTx, and the non-Clostridial botulinum-like toxins described herein. In one embodiment of all the aspects described herein, a fusion protein composition can further comprise a pharmaceutically acceptable carrier or excipient.

[0220] In one embodiment of a fusion protein or a composition described herein, the fusion protein further comprising a protease cleavage site at which site the fusion protein is cleavable by a protease, wherein the protease cleavage site is located C-terminal of the non-cytotoxic protease in the fusion protein. Proteases suitable for cleaving include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0221] In one embodiment of a fusion protein or a composition described herein, the non-cytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a non-Clostridial botulinumlike toxin. See Table 1 for non-limiting examples of the clostridial neurotoxin L-chain suitable for use in constructing the engineered fusion proteins described herein.

[0222] In one embodiment of a fusion protein or a composition described herein, the L chain is selected from the BTx light chain of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/Ε, BTx/F, or BTx/G, and first non-Clostridial botulinum-like toxin. In one embodiment of a fusion protein or a composition described herein, the L chain is selected from the BTx or TTx light chain disclosed in Table 1.

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PCT/US2016/049106 [0223] In one embodiment of a fusion protein or a composition described herein, the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx). See Table 1. For example, the BTx is BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, or BTx/G [0224] In one embodiment of a fusion protein or a composition described herein, the TF comprises a clostridial neurotoxin translocation domain or a non-Clostridial botulinum-like toxin translocation domain. For example, the translocation domain comprises the H_N of a clostridial neurotoxin or or a non-Clostridial botulinum-like toxin. In one embodiment, the translocation domain comprises a H_N described in Table 1. In one embodiment of a fusion protein or a composition described herein, the Hn is selected from the BTx Hn domain of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, or BTx/G, and first non-Clostridial botulinum-like toxin. In one embodiment of a fusion protein or a composition described herein, the H_N is selected from the BTx H_N domain disclosed in Table 1.

[0225] In one embodiment of a fusion protein or a composition described herein, the TM binds to the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

[0226] In one embodiment of a fusion protein or a composition described herein, the TM is an anthrax toxin protective antigen (PA) or a C-terminal receptor-binding domain of PA or a PA fragment thereof that retains binding activity to ANTXR2 or a nociceptor neuron binding protein. [0227] In one embodiment of a fusion protein or a composition described herein, the nociceptor neuron binding protein is an antibody. For example, an antibody that binds to a receptor or ion channel on the cell surface of a nociceptor neuron. For example, the receptor on the cell surface of a nociceptor neuron is ANTXR2 or NGFR. For example, the ion channel on the cell surface of a nociceptor neuron is Navi.7, Navi.8 or Navi.9.

[0228] In one embodiment of a fusion protein or a composition described herein, wherein the PA is a mutant PA resistant to furin cleavage. For example, the furin cleavage site comprising amino acid residues RKKR has been replaced by a furin-resistant amino acid sequence. For example, the furinresista-nt amino acid sequence is SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33) or RRSS (SEQ ID NO: 149). RKKR are the residues 164-167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO: 1.

[0229] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2-d4, and PAd4. In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAdl domain that is involved in calcium binding and

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PCT/US2016/049106 also LF and EF binding. PAdl is located at residues 1-258 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd2 that is involved in membrane insertion and heptamerization. In one embodiment, PAd2 is located at residues 259-487 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd3 that is involved in oligomerization. PAd3 is located at residues 488-594 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd4 that is involved in host cell receptor binding. In one embodiment, PAd4 is located at residues 595-735 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd3 and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 488-735 of PA (SEQ. ID. NO:1). Alternately, the C-terminal receptorbinding domain of PA comprises, consists of, or consist essentially of the residues 488-764 of PA (SEQ. ID. NO:1).

[0230] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2 and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-735 of PA (SEQ. ID. NO: 1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-764 of PA (SEQ. ID. NO: 1).

[0231] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2, PAd3, and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-735 of PA (SEQ. ID. NO: 1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-764 of PA (SEQ. ID. NO: 1).

[0232] In one embodiment of a fusion protein or a composition described herein, the PA, a Cterminal receptor-binding domain of PA, or a PA fragment thereof that retains binding activity to ANTXR2 or a nociceptor neuron binding protein (e.g., a PAd4 domain) is modified or mutated. For example, to be resistant to cleavage by a protease, such as Lys C or furin. In one embodiment of a fusion protein or a composition described herein, the PA, a C-terminal receptor-binding

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PCT/US2016/049106 domain of PA, or a PA fragment thereof that retains binding activity to ANTXR2 or a nociceptor neuron binding protein is resistant to cleavage by a protease, such as Lys C or furin. For example, the one or more of the Lys residues in the PAd4 domain of PA at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 has been replaced by Arg or His, wherein the numbering refers to that of SEQ ID NO: 1 after minusing the 29 aa signal peptide in SEQ. ID. NO:1, or one or more of the Lys residues at positions 623, 642, 662, 666,682, 702,

708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1 can be replaced, for examples, by Arg or His. Other proteas that can cleave PA, a C-terminal receptor-binding domain of PA, or a PA fragment thereof that retains binding activity to ANTXR2 or a nociceptor neuron binding protein include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0233] Accordingly, in one aspect, the engineered fusion protein comprises (a) PAd4 and (b) a BTx or TTx, wherein the PAd4 is fused or linked with the BTx or TTx. BTx or TTx are SNARE-targeting proteases. In one embodiment, the engineered fusion protein comprises (a) a PAd4 and (b) a SNARE-targeting protease, wherein the PAd4 is fused or linked with the SNARE-targeting protease. In one embodiment of the engineered fusion protein, the PAd4 domain is replaced with PA. In one embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin. In another aspect, we provide a composition comprising an engineered fusion protein comprises (a) a PAd4 and (b) a SNARE-targeting protease, wherein the PAd4 is fused or linked with the SNARE-targeting protease. In one embodiment, provided herein is a composition comprising an engineered fusion protein that comprises (a) PAd4 and (b) a BTx or TTx, wherein the PAd4 is fused or linked with the BTx or TTx. In another embodiment of the composition, the PAd4 domain of the engineered fusion protein includes PA, instead of PAd4. In one embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin. In another embodiment of any of the fusion polypeptide compositions described herein, the composition further comprises a pharmaceutically acceptable carrier or excipient.

[0234] In one embodiment of a fusion protein or composition described herein, the PAd4 or PA is linked with the TTx, BTx, or SNARE targeting protease with a peptide linker. In one embodiment of a fusion protein or composition, the linker peptide is 1-20 amino acids long. In one embodiment of a fusion protein or composition, the PAd4 or PA can replace the native receptor binding domain of the BTx or TTx neurotoxin, or is fused to a form of one of the BTx

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PCT/US2016/049106 or TTx neurotoxins in which the native receptor-binding function had been ablated by mutation. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease comprises the entire protein, i.e., the holotoxin, wherein the native receptor-binding function had been ablated by mutation. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease consist essentially of the entire protein, i.e., the holotoxin, wherein the native receptor-binding function had been ablated by mutation. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease consists of the entire protein, i.e., the holotoxin, wherein the native receptor-binding function had been ablated by mutation. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease comprises, consist essentially of, or consists of only a part of the protein, rather than the holotoxin, e.g., one or two domains of the holotoxin protein. For example, the TTx or BTx or SNARE-targeting protease element can consist essentially of the LC and H_N (LH_N) of a TTx, BTx or SNARE-targeting protease.

[0235] In another aspect, described herein is a fusion protein comprising (a) a botulinum neurotoxin (BTx) moiety comprising an N-terminal enzymatic domain (LC), and (b) an intermediate pore-forming/translocation -domain (H_N) of the BTx, and (c) a C-terminal receptorbinding domain of anthrax toxin protective antigen (PAd4 domain), wherein the parts (a)-(c) are linked together, e.g., linked together by linker peptides as described herein. In other words, an L H_n of a BTx is fused to a PAd4 domain of PA by a linker peptide, wherein PAd4 is the Cterminal receptor-binding domain of anthrax toxin protective antigen. In one embodiment of a fusion protein, PA is included instead of the PAd4. In one embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin. In another aspect, described herein is a composition comprising a fusion protein comprising (a) a botulinum neurotoxin (BTx) moiety comprising an N-terminal enzymatic domain (LC), and (b) an intermediate poreforming/translocation-domain (H_N) of the BTx, and (c) a C-terminal receptor-binding domain of anthrax toxin protective antigen (PAd4 domain), wherein the parts (a)-(c) are linked together. In one embodiment, the composition includes PA in place of the PAd4 domain in the fusion protein. In another embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin. In another embodiment of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0236] In one embodiment of a fusion protein or composition described herein, the BTx moiety is selected from the BTx light chain (LC) and heavy chain (HC) domains of any one of

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Clostridial BTx serotypes: BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, BTx/G, and a nonClostridial botulinum-like toxin.

[0237] In another aspect, described herein is a fusion protein comprising (a) an N-terminal enzymatic domain (LC) of tetanus neurotoxin (TTx), (b) a translocation/pore-forming domain (H_n) of TTx, and (c) a C-terminal receptor-binding domain of anthrax toxin protective antigen (PAd4 domain), wherein the parts (a)-(c) of fusion protein are linked together, e.g., operably linked together by linker peptides described herein. In other words, a LH_N of aTTx is fused to to a PAd4 domain of PA by a linker peptide, wherein PAd4 is the C-terminal receptor-binding domain of anthrax toxin protective antigen. In one embodiment, described herein is a composition comprising a fusion protein comprising (a) an N-terminal enzymatic domain (LC) of tetanus neurotoxin (TTx), (b) a translocation/pore-forming domain (H_N) of TTx, and (c) a Cterminal receptor-binding domain of anthrax toxin protective antigen (PAd4 domain), wherein the parts (a)-(c) of the fusion protein are linked together. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient. In another embodiment of a fusion protein or composition, the amino acid residues corresponding to the junction between the light chain of TTx and the heavy chain of TTx has been cleaved.

[0238] In one embodiment of a fusion protein or composition described herein, the amino acid residues corresponding to the LC junction with the HC of the BTx (serotypes included) or with TTx has been cleaved. In one embodiment of a fusion protein or composition described herein, the amino acid residues corresponding to the LC junction with the H_N of the BTx (serotypes included) or TTx has been cleaved. The cleavage is carried out by a protease, such as but is not limited to, lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0239] In one embodiment of any of the fusion proteins including a BTx moiety, the BTx moiety comprises a BTx or TTx enzymatic moiety and a translocation peptide/domain. In one embodiment, the enzymatic moiety and a translocation peptide/domain are linked by a linker peptide. In one embodiment of any of the fusion proteins including a BTx moiety comprising a BTx or TTx enzymatic moiety and a translocation peptide/domain, the enzymatic moiety and a translocation peptide/domain are separated by cleavage with a protease, e.g., Lys-C. In one embodiment of any of the fusion proteins including a BTx moiety comprising a BTx or TTx enzymatic moiety and a translocation peptide/domain linked by a linker peptide, the enzymatic

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PCT/US2016/049106 moiety and a translocation peptide/domain are separated by cleavage, e.g., with a protease, e.g., Lys-C. Cleavage functions to activate the enzymatic moiety and a translocation peptide/domain in the fusion protein.

[0240] In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of an L chain and a H_N domain of the BTx, the S-S bridge between the L chain and the H_N domain is not reduced. In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of an L chain and not a H_N domain of the BTx, the Cys residues in the L-chain and the belt corresponding to the N-terminal part of the BTx H_N domain in the holotoxin, if present, can be changed to Ala, Ser, or Thr. In one embodiment of a fusion protein or composition described herein, the fusion protein further comprises at least one Damino acid at the N-terminus of the fusion protein. The D-amino acid residues in the N-terminus serve to jdecrease potential immunogenicity of the fusion protein.

[0241] In one embodiment of a fusion protein or composition described herein, the PAd4 is linked with the LH_N with a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment, about 1-60 consecutive amino acids from the N-terminal side of PA adjacent to the native PAd4 domain are further incorporated between the enzymatic/poreforming domains of the fusion protein and the receptor binding PAd4 fusion partner. In one embodiment of fusion protein or composition, the PAd4 is located at the C-terminus of the fusion protein, and the LH_N is at the N-terminus of the fusion protein. In one embodiment of a fusion protein or composition, the PAd4 is located at the N-terminus of the fusion protein. In another embodiment of a fusion protein or composition, the PAd4 is located both at the Nterminus and the C-terminus of the fusion protein, with the LH_N (LC and H_N) sandwiched between two PAd4 domains. In another embodiment of a fusion protein or composition, there are more than one PAd4 domain in the fusion protein, e.g., two to ten PAd4 domains, one to five PAd4 domains, or two to five PAd4 domains. In one embodiment of a fusion protein or composition described herein, where multiple PAd4 domains are present, the multiple PAd4 domains are arranged in tandem. In one embodiment of a fusion protein or composition described herein, the multiple PAd4 domains are linked by peptide linkers. In one embodiment, the linker peptide is 1-20 amino acids long.

[0242] Accordingly, BTx-Anthrax toxin fusion protein or BTx-PA-derived fusion protein combinations include, but are not limited to:

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PCT/US2016/049106

LC/X-H_N/Y-(Linker)-PA^furin'

LC/X-H_N/Y-(Linker)-PAd2-d4

LC/X-H_N/Y-(Linker)-PAd4

LC/X-(Linker)-LFn

LC/X-(Linker)-EFn [0243] X & Y refer to a BTx subserotype and can be from the same (preferable) or different serotypes. Note that the presence of “Linker” in parenthesis indicates that one may be required if negative steric effects are observed. Non limiting example of a linkers are (GGS) (SEQ ID NO: 57) where n = 1 to 8.

[0244] Example constructs of fusion proteins of the invention, ((GGS)₂ is disclosed as SEQ ID NO: 58):

[0245] “LH_N/A-GS2-PA^furin'”: BTx/Al (1-872) + (GGS)₂ + _PA^R164S’^K165S’^K166S [0246] “LH_N/A-GS2-PA^furinAN”: BTx/Al (1-872) + (GGS)₂ + _Pa^r164S’^k165S’^k166S (15-735) [0247] “LH_N/A-GS2-PAd4”: BTx/Al (1-872) + (GGS)₂ + PA (595-735) [0248] “LC/A-GS2-LFPABD”: BTx/Al (1-448) + (GGS)₂ + LF (1-262) [0249] “LC/A-GS2-LFPABDAN”: BTx/Al (1-448) + (GGS)₂ + LF (29-262) [0250] “LC/A-GS2-EFPABD”: BTx/Al (1-448) + (GGS)₂ + EF (1-259) [0251] “LC/A-GS2-EFPABDAN”: BTx/Al (1-448) + (GGS)₂ + EF (31-259) [0252] “LH_N/B-GS2-PA^furin'”: BTx/Bl (1-859) + (GGS)₂ + _Pa^{r164SK165SK166S} [0253] “LH_N/B-GS2-PA^furinAN”: BTx/Bl (1-859) + (GGS)₂ + _Pa^r164S’^k165S’^k166S (15-735) [0254] “LH_N/B-GS2-PAd4”: BTx/Bl (1-859) + (GGS)₂ + PA (595-735) [0255] “LC/B-GS2-LFPABD”: BTx/Bl (1-441) + (GGS)₂ + LF (1-262) [0256] “LC/B-GS2-LFPABDAN”: BTx/Bl (1-441) + (GGS)₂ + LF (29-262) [0257] “LC/B-GS2-EFPABD”: BTx/Bl (1-441) + (GGS)₂ + EF (1-259) [0258] “LC/B-GS2-EFPABDAN”: BTx/Bl (1-441) + (GGS)₂ + EF (31-259) [0259] BTx/TTx—LFn/EFn fusion proteins [0260] Native PA and a fusion protein comprising LFn fused to the catalytic domain of TTx or the catalytic domain of one or another of the various forms/serotypes of BTx, when used in combination can be directed to disrupt intracellular signaling in the nociceptor neurons or block synaptic transmission via neurotransmitters. (See Figure 8A and 8B) These constructs make use of the proteolytic activities of the catalytic domains to cleave SNARE proteins and thereby block neurotransmitter release without killing nociceptors or bystander cells. The TTx or one or

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PCT/US2016/049106 another of the various forms/serotypes of BTx or CNT family of toxins are SNARE-targeting proteases.

[0261] Accordingly, in one aspect, the engineered fusion protein comprises (a) an LFn and (b) a SNARE-targeting protease. In one embodiment, the engineered fusion protein comprises (a) an LFn and (b) a TTx or a BTx. In one embodiment of a fusion protein described herein, LFn is linked with the TTx, BTx, or SNARE targeting protease with a peptide linker. In one embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) an LFn and (b) a TTx or a BTx. In one embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) an LFn and (b) a SNAREtargeting protease. In one embodiment of all the aspects described herein, a fusion protein composition can further comprise a pharmaceutically acceptable carrier or excipient. In one embodiment of a fusion protein or composition described herein, LFn is linked with the TTx, BTx, or SNARE targeting protease with a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment of an engineered fusion protein or composition described herein, the LFn is located at the N-terminus of the fusion protein. In one embodiment of an engineered fusion protein or composition described herein, the LFn is located at the Cterminus of the fusion protein. In one embodiment of an engineered fusion proteins described herein, the LFn is located both at the N-terminus and C-terminus of the fusion protein, with the TTx or BTx or SNARE-targeting protease sandwiched between the two LFns. In another embodiment of an engineered fusion protein or composition described herein, EFn is included instead of LFn. In one embodiment of a fusion protein or composition described herein, the TTx or BTx or SNARE-targeting protease comprises the entire protein, i.e., the holotoxin. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease consist essentially of the entire protein, i.e., the holotoxin. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease consists of the entire protein, i.e., the holotoxin. The fusion protein containing the holotoxin would need to be activated by proteolytic cleavage. Proteases suitable activating the holotoxin include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C. Proteases suitable for cleaving the junction include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C. In one embodiment of a fusion protein or composition, the TTx or BTx or SNARE-targeting protease comprises, consist

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PCT/US2016/049106 essentially of, or consists of only a part of the protein, not the holotoxin, e.g., a domain of the holotoxin. For example, the TTx or BTx or SNARE-targeting protease can consist essentially of LC or LC and H_N (LH_N) of the TTx or BTx or SNARE-targeting protease. For example, the TTx or BTx or SNARE-targeting protease can consist essentially of LC plus the belt segment located at the N-terminus of the holotoxin, the belt segment is found between the L chain and the H_N chain. In one embodiment of a fusion protein or composition described, the BTx is selected from the BTx LC and Hn domains of any one of serotypes: BTx/A, BTx/B, BTx/C, BTx/D, BTx/E, BTx/F, BTx/G, and a non-Clostridial botulinum-like toxin. In one embodiment of a fusion protein or composition described, the BTx is selected from BTx LC and H_N domains from Table 1, as non-limiting examples, see SEQ. ID. NOS: 29-31.

[0262] Accordingly, in one aspect, provided herein is a fusion protein comprising (a) an enzymatic moiety of a botulinum neurotoxin (BTx) or an an enzymatic moiety of a tetanus neurotoxin (TTx), and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor; or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor. The enzymatic moiety of BTx is located at the N-terminal of botulinum neurotoxin holotoxin. In one embodiment, provided herein is a composition comprising a fusion protein comprising (a) an enzymatic moiety of a botulinum neurotoxin (BTx) or an an enzymatic moiety of a tetanus neurotoxin (TTx), and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor; or (b)(ii) the Nterminal domain (EFn) of anthrax toxin edema factor. In one embodiment of all the aspects described herein, the composition further comprises a pharmaceutically acceptable carrier or excipient.

[0263] In one aspect, provided herein is a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA or PA fragment binds a receptor expressed on the nociceptor neuron. In one embodiment, provided herein is a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment thereof,wherein the PA or PA fragment binds a receptor expressed on the nociceptor neuron. In some embodiments of all the aspects described herein, the composition as described herein further comprise a pharmaceutically acceptable carrier or excipient.

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PCT/US2016/049106 [0264] In one embodiment of a fusion protein or composition as described herein, the noncytotoxic protease comprises a clostridial neurotoxin L-chain (LC) or a non-Clostridial botulinum-like toxin L-chain. In one embodiment of a fusion protein or composition, the clostridial neurotoxin L-chain (LC) or a non-Clostridial botulinum-like toxin L-chain is the enzymatic moiety. In one embodiment of a fusion protein or composition, the non-cytotoxic protease is selected from the group consisting of the BTx light chain domains of any one of BTx/A, BTx/B, BTx/C, BTx/D, BTx/Ε, BTx/F, BTx/G, a first non-Clostridial botulinum-like toxin, and a TTx. For example, the non-cytotoxic protease can be selected from the group consisting of BTx/A LC (a.a. 1-448), BTx/B LC (a.a. 1-441), BTx/C LC (a.a. 1-449), BTx/D LC (a.a. 1-442), BTx/Ε LC (a.a. 1-422), BTx/F LC (a.a. 1-436), and BTx/G LC (a.a. 1-442). For examples, the the BTx light chain can be selected from SEQ ID NO: 20-28 or Table 1 described herein.

[0265] In one embodiment of a fusion protein or composition, the clostridial neurotoxin is BTx or TTx.

[0266] In one embodiment of a fusion protein or composition, the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

[0267] In one embodiment of a fusion protein or composition, the protein capable of binding to PA is: (i) an anthrax toxin lethal factor (LF); or (ii) an anthrax toxin edema factor (EF).

[0268] In one embodiment of a fusion protein or composition, the PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

[0269] In one embodiment of a fusion protein or composition, the PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

[0270] In one embodiment of a fusion protein or composition, the LFn and EFn are domains that bind to oligomeric forms of PA63, the proteolytically activated form of anthrax PA. In one embodiment of a fusion protein or composition, the enzymatic domain is the LC of the BTx or TTx described herein. In one embodiment of a fusion protein or composition, the enzymatic domain is linked N-terminally or C-terminally or both N-terminally and C-terminally, to LFn or EFn. In one embodiment of a fusion protein or composition described herein, the LFn or EFn is linked with the enzymatic domain or the LC of the BTx or TTx by way of a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment of an engineered fusion protein or composition described herein, the LFn or EFn is located at the Nterminus of the fusion protein. In one embodiment of an engineered fusion protein or

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PCT/US2016/049106 composition described herein, the LFn or EFn is located at the C-terminus of the fusion protein. In one embodiment of an engineered fusion protein or composition described herein, the LFn or EFn is located both at the N-terminus and C-terminus of the fusion protein, with the N-terminal enzymatic domain or the LC of the BTx or TTx sandwiched between the two LFns or EFns. In one embodiment of a fusion protein or composition described herein, the fusion protein can further comprise an amino acid sequence defining a belt corresponding to the N-terminal part of the BTx H_n domain, wherein the H_N domain is located at the C-terminal side of the BTx.

[0271] In one embodiment of a fusion protein or composition described herein, where the fusion protein comprises both the L and H_N of a BTx or TTx, e.g., amino acids 1-872 (SEQ. ID. NO:29), the amino acid residues corresponding to the LC junction with the H_N of BTx have been cleaved. Proteases suitable for cleaving the junction include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C. In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of an L chain and a H_N domain of BTx, the S-S bridge between the L chain and the H_N domain is not reduced. In one embodiment of any of the fusion proteins including a BTx moiety, wherein the BTx moiety comprises, consist essentially of, or consists of an L chain and not a H_N domain of BTx, the Cys residues in the L-chain and the belt corresponding to the N-terminal part of the BTx H_N domain in the holotoxin, if present, have been changed to Ala, Ser, or Thr. In one embodiment of a fusion protein or composition described herein, the fusion protein further comprises at least one D-amino acid at the N-terminus of the fusion protein. The D-amino acid can be added by a Sortase reaction and are described in more detail in, e.g., International Patent Publication WO 2012/096926; US Patent No: 9079952, and US Patent Application Publications No: US 2013/0336974 and US 2015/0267186, each of which is incorporated by reference herein in its entirety.

[0272] In one embodiment of a fusion protein described herein that comprises an LFn or EFn, or LF or EF, these fusion proteins are used together with non-fused PA, or used together with a second fusion protein comprising (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the toxin to nociceptor neurons to treat pain. In other words, in one embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with a separate,

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PCT/US2016/049106 non-fused PA polypeptide to a subject to treat pain. In another embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with a second fusion protein to a subject to treat pain. The second fusion protein comprises (a) PA or a PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the first fusion protein containing the toxin to nociceptor neurons to treat pain. In some embodiments of the second fusion protein, the PA is a variant (mPA), a modified (e.g., chemically) or mutated form that does not bind the ANTXR2 receptor as described herein.

[0273] In one aspect, then, provided herein is a composition comprising:

(I) a first fusion protein comprising (a) a botulinum neurotoxin N-terminal enzymatic domain of a botulinum neurotoxin (BTx) moiety, the enzymatic domain, or tetanus neurotoxin (TTx) moiety, the enzymatic domain and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor, and (II) a second protein comprising (c) PA or PA fragment capable of binding LFn or EFn, and optionally (d) nociceptor neuron-binding protein, wherein the parts (a) and (b) are joined by a peptide linker, and wherein the parts (c) and (d) are also joined by a peptide linker, when part (d) is present. In one embodiment of the composition described, when the second protein is a fusion protein, the PA is a mutant variant of PA, an mPA.

[0274] In one embodiment of any of the toxin proteins, toxin fusion proteins or fusion protein compositions described herein, the composition further comprises a pharmaceutically acceptable carrier or excipient. In one embodiment of a composition comprising a linker peptide, the linker peptide is 1-20 amino acids long. An non-limiting example of a PA fragment capable of binding LFn or EFn is PA63. In one embodiment, the PA protein is an oligomeric PA. In one embodiment, the PA is a native anthrax toxin protective antigen (PA) protein. In one embodiment of a composition described herein, the PA is an oligomeric PA, which can be bound to the fusion protein. In one embodiment, this composition is useful for the treatment of pain such as nerve, joint, skin, visceral, bladder, or muscle pain, and diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders. In another embodiment, this composition is useful in the manufacture of medicament for the treatment of pain.

[0275] AB toxin-LFn/EFn fusion proteins

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PCT/US2016/049106 [0276] Native PA and a fusion protein LFn-DT in combination can be directed to nociceptor neurons using the catalytic domain (aka the “A” component or “A” part) of diphtheria toxin (DT) to block protein synthesis. DT is an AB type toxin. Accordingly, in one aspectt, an engineered fusion protein comprises (a) an LFn and (b) a DT. In one embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) an LFn and (b) a DT. In one embodiment of a fusion protein, LFn is linked to the DT with a peptide linker. In one embodiment of a fusion protein, DT comprises both the A part and the B part found in SEQ. ID. NO: 2. In one embodiment, DT is DTA, comprising the A part (the active, catalytic/enzymatic domain) found in SEQ ID NO: 2. The DTA amino acid sequence includes residues 1-193 of the diphtheria toxin. In one embodiment of an engineered fusion protein comprising LFn, the LFn is located at the N-terminus of the fusion protein. In another embodiment of an engineered fusion protein comprising LFn, the LFn is located at the C-terminus of the fusion protein. In another embodiment of an engineered fusion protein comprising LFn, the LFn is located both at the N- terminus and C-terminus of the fusion protein, with DT sandwiched between the two LFns. In another embodiment, the LFn is replaced with EFn. Accordingly, in one embodiment, the engineered fusion protein comprises (a) an EFn and (b) a DT. In one embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) an EFn and (b) a DT. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0277] In some embodiments of an engineered fusion protein or composition described herein, the catalytic domains of other intracellularly acting toxins, such as the plant toxin, ricin, or a disulfide-containing peptide toxin such as the ICK toxin could be fused to LFn in place of DT, giving an engineered fusion protein such as LFn-ΡΕ (PTx), LFn-conotoxin, LFn-ricin, LFnCholera toxin, LFn-agatoxin, LFn- delta-palutoxin, LFn-huwentotoxin, LFn- scorpion longchain toxin, and/or LFn-Shiga toxin. Accordingly, in one embodiment of an engineered fusion protein or composition described herein, the LFn is linked with one other toxin, the other toxin being an intracellularly acting toxin. In one embodiment of a fusion protein or composition, the intracellularly acting toxin is selected from the group consisting of ricin, PE, conotoxin, Cholera toxin, agatoxin, delta-palutoxin, huwentotoxin, Shiga toxin, scorpion long-chain toxin, and scorpion short-chain toxin. In one embodiment of a fusion protein or composition, LFn is linked to the other toxin with a peptide linker. In another embodiment of an engineered fusion protein or composition described herein, the LFn is linked with at least one other toxin that is not

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PCT/US2016/049106 derived from the anthrax toxin. In another embodiment of an engineered fusion protein or composition described herein, the LFn is linked to the A component or active, catalytic or enzymatic domain of an AB toxin, e.g., the A component residues between amino acid residues 364-613 of PE, the A part residues are 1-193 of the DT.

[0278] In one embodiment of an engineered fusion protein or composition described herein,

LFn is located at the N-terminus of the fusion protein. In another embodiment of an engineered fusion protein or composition described herein, LFn is located at the C-terminus of the fusion protein. In one embodiment of an engineered fusion protein or composition described herein, LFn is located both at the N- terminus and C-terminus of the fusion protein, with the intracellularly acting toxin sandwiched between the two LFns. In another embodiment of an engineered fusion protein or composition described herein, EFn is included instead of LFn. For example, this provides an engineered fusion protein such as EFn-PE (PTx), EFn-conotoxin, EFn-ricin, EFn-Cholera toxin, EFn-agatoxin, EFn-delta-palutoxin EFn-huwentotoxin, or EFnShiga toxin.

[0279] In some embodiments of a fusion protein described herein comprising a LFn or EFn, or LF or EF, these fusion proteins are used together with non-fused or separate PA, or used together with a second fusion protein to treat pain. In other words, in one embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF polypeptide is coadministered with PA to a subject to treat pain. In another embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with a second fusion protein to a subject to treat pain.The second fusion protein comprises (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the first fusion protein containing the toxin to nociceptor neurons to treat pain. In some embodiments of the second fusion protein, the PA is a mutant variant of the native PA (mPA), a form that does not bind the ANTXR2 receptor as described herein.

[0280] In one aspect, provided herein is a composition comprising:

(I) a first fusion protein comprising (a) a DT, an intracellularly acting toxin, an ICK toxin or a disulfide-containing peptide toxin, and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor, and (II) a second protein comprising (c) PA or PA fragment capable of binding LFn or EFn, and optionally (d) a nociceptor neuron-binding protein,

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PCT/US2016/049106 wherein the parts (a) and (b) are joined by a peptide linker, and wherein the parts (c) and (d) are also joined by a peptide linker when (d) is present. In one embodiment of the composition described, when the second protein is a fusion protein, the PA is a mutant variant of PA, a mPA.

[0281] In one embodiment of the composition, the linker peptides are 1-20 amino acids long. A non-limiting example of PA fragment capable of binding LFn or EFn is PA63. In one embodiment of a composition described herein which includes a PA protein, the PA protein is an oligomeric PA. In another embodiment, the PA is a native anthrax toxin protective antigen (PA) protein. In another embodiment, the oligomeric PA is bound to the fusion protein.

[0282] In one embodiment, compositions described herein which include toxins and/or toxin fusions are useful for the treatment of pain such as nerve, joint, skin, visceral, bladder, or muscle pain, diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders. In another embodiment, these compositions are useful in the manufacture of medicament for the treatment of pain.

[0283] AB toxin-PAd4/PA fusion proteins [0284] In another aspect, provided herein is a fusion protein comprising an AB toxin fused to a linker peptide that is then linked to a PAd4 domain of PA, wherein PAd4 is the C-terminal receptor-binding domain of anthrax toxin protective antigen, wherein the fusion protein further comprises a translocation domain, a holotoxin or a mutant form of the holotoxin that has been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin. In one embodiment of a fusion protein, PA is used instead of a PAd4 domain. In one embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin, (PA^funn'). [0285] In one embodiment, provided herein is a composition comprising an AB toxin fused to a linker peptide operably linked to a PAd4 domain of PA, wherein Pad4 is the C-terminal receptor-binding domain of anthrax toxin protective antigen, wherein the fusion protein further comprises a translocation domain, a holotoxin or a mutant form of the holotoxin that has been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin. In one embodiment of a fusion protein, PA is used instead of a PAd4 domain. In one embodiment, the PA is a variant PA mutant form that is resistant to cleavage by furin, (PA^funn'). In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

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PCT/US2016/049106 [0286] In one aspect, provided herein is a fusion protein comprising: (a) an AB toxin; (b) an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or fragment binds a receptor expressed on the nociceptor neuron; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron.

[0287] In one embodiment, provided herein is a composition comprising a fusion protein comprising: (a) an AB toxin; (b) an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or fragment binds a receptor expressed on the nociceptor neuron; and (c) a translocation domain (TL) that is capable of translocating the toxin, a protease, from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0288] In one embodiment of a fusion protein or composition described herein, the AB toxin is selected from Ricin toxin, Cholera toxin A-part and B-part; Pseudomonas aeruginosa Exotoxin A A-part and B-part; Shiga toxin A-part and B-part; and Diphtheria toxin A-part and B-part. [0289] In one embodiment of a fusion protein or composition described herein, the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

[0290] In one embodiment of a fusion protein or composition described herein, the PA fragment is a C-terminal receptor-binding domain of PA, e.g., PA63 or PAd4 as non-limiting examples. [0291] In one embodiment of a fusion protein or composition described herein, the C-terminal receptor-binding domain of PA comprises, consist essentially of, or consists of a domain having the amino acid sequence of SEQ ID NO: 35-40. In one embodiment of a fusion protein or composition described herein, the PA fragment comprises, consist essentially of, or consists of a domain having the amino acid sequence of SEQ ID NO: 35-40.

[0292] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAdl domain that is involved in calcium binding and also LF and EF binding. PAdl is located at residues 1-258 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd2 that is involved in membrane insertion and heptamerization. In one embodiment, PAd2 is located at residues 259-487 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd3 that is involved in oligomerization. PAd3 is located at residues 488-594 of

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PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises the PAd4 that is involved in host cell receptor binding. In one embodiment, PAd4 is located at residues 595-735 of PA (SEQ. ID. NO: 1). In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd3 and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 488-735 of PA (SEQ. ID. NO:1). Alternately, the C-terminal receptorbinding domain of PA comprises, consists of, or consist essentially of the residues 488-764 of PA (SEQ. ID. NO:1).

[0293] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2 and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-735 of PA (SEQ. ID. NO: 1). Alternately, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-487 and 488-764 of PA (SEQ. ID. NO: 1).

[0294] In one embodiment of a fusion protein or a composition described herein, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the PAd2, PAd3, and the PAd4domain of PA. For example, the C-terminal receptor-binding domain of PA comprises, consists of, or consist essentially of the residues 259-735 of PA (SEQ. ID. NO: 1).

[0295] In one embodiment of a fusion protein or composition described herein, the PAd4 or PA fragment is linked with the AB toxin with a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment of a fusion protein or composition described, approximately about 1-60 consecutive amino acids from the N-terminal side adjacent to the native PAd4 domain are further incorporated between the AB toxin and the PAd4. In one embodiment of a fusion protein or composition, the PAd4 is located at the C-terminus of the fusion protein, and the AB toxin is at the C-terminus of the fusion protein. In one embodiment of a fusion protein or composition, the PAd4 is located at the N-terminus of the fusion protein. In another embodiment of a fusion protein or composition, the PAd4 is located both at the Nterminus and the C-terminus of the fusion protein, with the AB toxin sandwiched between the two PAd4 domains. In another embodiment of a fusion protein or composition, there are more than one PAd4 domain in the fusion protein, e.g., 2-10 PAd4 domains, 1-5 PAd4 domains, 2-5 PAd4 domains, in tandem. In one embodiment of a fusion protein or composition described

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PCT/US2016/049106 herein, where multiple PAd4 domains are present, the multiple PAd4 domains are arranged in tandem. In one embodiment of a fusion protein or composition described herein, the multiple PAd4 domains are linked by peptide linkers. In one embodiment of a fusion protein or composition described herein, the TL, translocation domain; a holotoxin; or a mutant form of the holotoxin is sandwiched between the AB toxin and PAd4 or PA fragment.

[0296] In one embodiment of a fusion protein or composition described herein, the AB toxin is selected from Ricin toxin, Cholera toxin A-part and B-part; Pseudomonas aeruginosa Exotoxin A A-part and B-part; Shiga toxin A-part and B-part; and Diphtheria toxin A-part and B-part. In one embodiment of a fusion protein or composition described herein, the TL is a clostridial neurotoxin translocation domain; a holotoxin; or a mutant form of the holotoxin that have been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin. In some embodiments of a fusion protein or composition described herein, the translocation domain is derived from BTx or TTx, e.g., the H_N of BTx or TTx as disclosed in Table 1 (a clostridial neurotoxin translocation domain), or the translocation domain is derived from the anthrax toxin, e.g., LFn or EFn, or a polycationic sequence described herein. In some embodiments of the fusion proteins or compositions described herein, the holotoxin or a mutant form of the holotoxin is selected from Ricin toxin, Cholera toxin, PE; Shiga toxin, DT; and scorpion long-or short-chain toxins. In some embodiments of a fusion protein or composition described herein, the holotoxin or a mutant form of the holotoxin is PA, mPA, or PA^funn', e.g., for an entire PA protein, the furin cleavage site comprising amino acid residues RKKR has been replaced by a furin-resistant amino acid sequence such as SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33), or RRSS (SEQ ID NO: 149). RKKR are the residues 164-167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO:1.

[0297] In some embodiments of a fusion protein described herein comprising a LFn or EFn, or LF or EF, these fusion proteins can be used together with non-fused or separate PA, or used together with a second fusion protein comprising (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the toxin to nociceptor neurons to treat pain. In other words, in one embodiment, the fusion protein described herein comprising a LFn or EFn, or LF or EF is co-administered with PA alone to a subject to treat pain. In another embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with a second fusion protein to a subject to treat

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PCT/US2016/049106 pain. In such instances, the second fusion protein comprises (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the first fusion protein containing the toxin to nociceptor neurons to treat pain. In some embodiments of the second fusion protein, the PA is a variant, modified (e.g., chemically) or mutated form (mPA) that does not bind the ANTXR2 receptor as described herein.

[0298] In one aspect, provided herein is a composition comprising:

(I) a first fusion protein comprising (a) AB toxin and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor, and (II) a second protein comprising (c) PA or PA fragment capable of binding LFn or EFn, and optionally (d) nociceptor neuron-binding protein, wherein the parts (a) and (b) are joined by a peptide linker, and wherein the parts (c) and (d) are also joined by a peptide linker, when part (d) is present. In one embodiment of the composition described, when the second protein is a fusion protein, the PA is a mutant variant of PA, an mPA.

[0299] In one embodiment of the composition, the linker peptides are 1-20 amino acids long. An example of PA fragment capable of binding LFn or EFn is PA63. In one embodiment of any one composition described herein, the PA protein is an oligomeric PA. In one embodiment of any one composition described herein, the PA is a native anthrax toxin protective antigen (PA) protein. In one embodiment, the PA is the oligomeric PA. In one embodiment, the oligomeric PA is bound to the fusion protein. In one embodiment, this composition is useful for the treatment of pain such as nerve, joint, skin, visceral, bladder, or muscle pain, and diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders. In another embodiment, this composition is useful in the manufacture of medicament for the treatment of pain.

[0300] ICK toxin—PAd4/PA fusion proteins [0301] Also described herein is the engineering of anthrax toxin components with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)). Because some ICK toxins are known to modulate the activity of ion channels, they have been used to treat pain but effects on cell-types other than nociceptors have hampered systemic treatment. If these toxins are fused to, or otherwise used to decorate, PAd4 or native PA, they can be targeted specifically to nociceptors. (See Figure 9) Accordingly, in one aspect, an engineered fusion protein comprises (a) PAd4 or

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PCT/US2016/049106 native PA or receptor-binidng fragment thereof, and (b) an ICK toxin. In another embodiment, provided herein is a composition comprising an engineered fusion protein that comprises (a) PAd4 or native PA or receptor-binding fragment thereof, and (b) an ICK toxin. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient. The PAd4 or native PA or receptorbinding fragment thereof can be fused to the ICK toxin by a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long.

[0302] ICK toxin—LFn/EFn fusion proteins

Alternatively, the ICK toxin can be fused to LFn or EFn, or a fusion protein containing LFn or EFn, which can then be used in combination with PA, or a modified (e.g., chemically) or mutated form of PA, to affect nociceptors specifically. Accordingly, in one aspect, provided herein is an engineered fusion protein comprising (a) LFn and (b) an ICK toxin. In another aspect, provided herein is an engineered fusion protein comprising (a) EFn, and (b) an ICKtoxin. In another aspect, provided herein is an engineered fusion protein comprising (a) an ICKtoxin, and (b) a nociceptor neuron-binding protein. In one embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) LFn and (b) an ICK toxin. In another embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) EFn, and (b) an ICKtoxin. In another embodiment, provided herein is a composition comprising an engineered fusion protein comprising (a) an ICKtoxin, and (b) a nociceptor neuron-binding protein. The nociceptor neuron-binding protein helps direct the ICK toxin specifically to the nociceptor neuron. Similarly, the LFn or EFn, together with PA or variant forms of PA or receptor-binding fragments thereof, helps deliver the toxin directly to nociceptor neurons and into the cytosol. In one embodiment of an engineered fusion protein or composition described herein, the LFn, EFn, or nociceptor neuron-binding protein is fused to the ICK toxin by a peptide linker. In one embodiment, the linker peptide is 1-20 amino acids long.

In one embodiment of an engineered fusion protein or composition described herein, the LFn, EFn, or nociceptor neuron-binding protein is located at the N-terminus of the fusion protein. In one embodiment of an engineered fusion protein or composition described herein, the LFn, EFn, or nociceptor neuron-binding protein is located at the C-terminus of the fusion protein. In another embodiment, the LFn, EFn, or nociceptor neuron-binding protein is located at both the N-terminus and the C-terminus of the fusion protein, with the ICKtoxin sandwiched between the LFn, EFn, or nociceptor neuron-binding protein.

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PCT/US2016/049106 [0303] Disulfide-containing peptide toxin—LFn/EFn fusion proteins [0304] In another aspect, provided herein is a fusion protein comprising (a) a disulfidecontaining peptide toxin and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor. In one embodiment, a composition is provided comprising a fusion protein comprising (a) a disulfide-containing peptide toxin and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor. In one embodiment of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0305] In one embodiment of a fusion protein or composition described, the disulfide-containing peptide toxin is linked N-terminally or C-terminally or both N-terminally and C-terminally, or chemically crosslinked at one or more sites to LFn or EFn. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is linked to LFn or EFn. LFn is a domain of anthrax toxin lethal factor which binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA. EFn is a domain of anthrax toxin edema factor, which domain binds to oligomeric forms of PA63. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is an inhibitor cysteine knot toxin (ICK) toxin. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin. In one embodiment of a fusion protein or composition, part (a) is fused with part (b) with a linker peptide. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment of a fusion protein or composition described herein, the LFn or EFn is located at the N-terminus of the fusion protein. In one embodiment of a fusion protein or composition described herein, the LFn or EFn is located at the C-terminus of the fusion protein. In another embodiment of a fusion protein or composition, the LFn or EFn is located at both the N-terminus and the C-terminus of the fusion protein, with the disulfidecontaining peptide toxin sandwiched between the two LFns or EFns.

[0306] In one aspect, described herein is a fusion protein comprising: (a) a disulfide-containing peptide toxin and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the fragment binds a receptor expressed on a nociceptor neuron. In one embodiment, the disulfide-containing peptide toxin is a channel blocking toxin having a cysteine-knot motif that is capable of blocking sodium or calcium or both sodium and calcium

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PCT/US2016/049106 channels in a nociceptor neuron. In one embodiment, a composition is provided comprising a fusion protein comprising: (a) a disulfide-containing peptide toxin and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA fragment binds a receptor expressed on the nociceptor neuron. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0307] In all of the above aspects and embodiments of a fusion protein or composition described, the disulfide-containing peptide toxin can comprise a cysteine knot motif.

[0308] In all of the above aspects and embodiments of a fusion protein or composition described, the disulfide-containing peptide toxin can be a conotoxin, an agatoxin, a deltapalutoxin, a huwentotoxin or a ProTx II toxin.

[0309] In all of the above aspects and embodiments of a fusion protein or composition described, the PA-binding receptor expressed on the nociceptor neuron can be ANTXR2 (CMG2).

[0310] In all of the above aspects and embodiments of a fusion protein or composition described, the protein capable of binding to PA can be: (i) an anthrax toxin lethal factor (LF); or (ii) an anthrax toxin edema factor (EF).

[0311] In all of the above aspects and embodiments of a fusion protein or composition described, the PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

[0312] In all of the above aspects and embodiments of a fusion protein or composition described, the PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

[0313] In some embodiments of a fusion protein described herein comprising a LFn or EFn, or LF or EF, these fusion proteins are used or administered together with unfused PA, or used or administered together with a second fusion protein comprising (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the toxin to nociceptor neurons to treat pain. In other words, in one embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with unfused or native PA to a subject to treat pain. In another embodiment, the fusion protein described herein comprising an LFn or EFn, or LF or EF is co-administered with a second fusion

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PCT/US2016/049106 protein to a subject to treat pain. The second fusion protein comprises (a) PA or PA fragment capable of binding LFn or EFn, and (b) a nociceptor neuron-binding protein, where the PA or PA fragment is fused to a nociceptor neuron-binding protein, and the nociceptor neuron-binding protein directs the first fusion protein containing the toxin to nociceptor neurons to treat pain. In some embodiments of the second fusion protein, the PA is a modified (e.g., chemically) or mutated variant form (mPA), that does not bind the ANTXR2 receptor as described herein.

[0314] In one aspect, described herein is a composition comprising:

(I) a first fusion protein comprising (a) a disulfide-containing peptide toxin and (b)(i) the N-terminal domain (LFn) of anthrax toxin lethal factor or (b)(ii) the N-terminal domain (EFn) of anthrax toxin edema factor, and (II) a second protein comprising (c) PA or PA fragment capable of binding LFn or EFn, and optionally (d) nociceptor neuron-binding protein, wherein the parts (a) and (b) are joined by a peptide linker, and wherein the parts (c) and (d) are also joined by a peptide linker. In one embodiment of the composition described, when the second protein is a fusion protein, the PA is a mutant variant of PA, an mPA. In one embodiment of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0315] In one embodiment, the linker peptides are 1-20 amino acids long. A non-limiting example of a PA fragment capable of binding LFn or EFn is PA63. In one embodiment of a composition described herein, the PA protein is an oligomeric PA. In one embodiment of a composition described herein, the PA is a native anthrax toxin protective antigen (PA) protein.

In one embodiment of a composition described herein, the PA is an oligomeric PA, which can be bound to the fusion protein. In one embodiment, such a composition is useful for the treatment of pain such as nerve, joint, skin, visceral, bladder, or muscle pain, and diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders. In another embodiment, this composition is useful in the manufacture of medicament for the treatment of pain.

[0316] Disulfide-containing peptide toxin— PAd4/PA fusion proteins [0317] In one aspect, provided herein is a fusion protein comprising (a) a disulfide-containing peptide toxin, and (b)(i) an anthrax toxin protective antigen (PA) or (b)(ii) an anthrax toxin protective antigen C-terminal receptor binding domain (PAd4); or (b)(iii) a nociceptor neuronbinding protein . (See Figure 9) In one embodiment, a composition is provided comprising a

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PCT/US2016/049106 fusion protein comprising (a) a disulfide-containing peptide toxin, and (b)(i) an anthrax toxin protective antigen (PA) or (b)(ii) an anthrax toxin protective antigen C-terminal receptor binding domain (PAd4); or (b)(iii) a nociceptor neuron-binding protein . In one embodiment of a fusion protein or composition, part (a) is fused to part (b) with a linker peptide. In one embodiment, the linker peptide is 1-20 amino acids long. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is located at the N-terminus of the fusion protein. In one embodiment of a fusion protein or composition described herein, the disulfidecontaining peptide toxin is located at the C-terminus of the fusion protein. In another embodiment, the PA, PAd4 or nociceptor neuron-binding protein is located at both the Nterminus and the C-terminus of the fusion protein, such that the disulfide-containing peptide toxin is sandwiched by the two PA, PAd4 or nociceptor neuron-binding proteins. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is an inhibitor cysteine knot toxin (ICK) toxin. In one embodiment of a fusion protein or composition described herein, the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II (PE) toxin. In one embodiment of a fusion protein or composition described herein, the fusion protein comprises a linker peptide between the PA, PAd4 or nociceptor-binding protein and the inhibitor cysteine knot toxin.

[0318] In another aspect, provided herein is a fusion protein comprising: (a) a disulfidecontaining peptide toxin that is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses sodium or calcium or both sodium and calcium channels. In one embodiment, the disulfidecontaining peptide toxin is a channel blocking toxin having a cysteine-knot motif that is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron. In another embodiment, provided herein is a composition comprising a fusion protein comprising: (a) a disulfide-containing peptide toxin that is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses the sodium or calcium or both sodium and calcium channels therein. In some embodiments of all the aspects described herein, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

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PCT/US2016/049106 [0319] In all of the above aspects and embodiments of a fusion protein or composition described, the disulfide-containing peptide toxin can comprises a cysteine knot motif.

[0320] In all of the above aspects and embodiments of a fusion protein or composition described, the disulfide-containing peptide toxin can be, for example, a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

[0321] In all of the above aspects and embodiments of a fusion protein or composition described, the TM can be selected, for example, from the group consisting of: (i) an anthrax toxin protective antigen (PA); (ii) a C-terminal receptor-binding domain of PA; or (iii) a PA fragment thereof, e.g., PAd4; or (iv) a nociceptor neuron-binding protein.

[0322] In one embodiment of each of the fusion protein or composition described, the TM, PA or C-terminal receptor-binding domain of PA, or a PA fragment or the nociceptor neuronbinding protein can bind the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron. In one embodiment, the nociceptor neuron-binding protein is an antibody that specifically binds the ANTXR2 receptor. In one embodiment, the antibody is an antibody fragment that can bind the ANTXR2 receptor. In another embodiment, the antibody specifically binds to the NGF receptor, or an ion-channel protein present on nociceptor neurons. In some embodiments, the ion-channel protein is selected from Navi.7, Navi.8 or Navi.9.

[0323] In all of the above aspects and embodiments of a fusion protein or composition described, the PA can be, for example, a mutant PA resistant to furin cleavage as described herein and known in the art. For example, the furin cleavage site comprising amino acid residues RKKR can be replaced by a furin-resistant amino acid sequence such as SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33) or RRSS (SEQ ID NO: 149). RKKR are the residues 164-167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO: 1.

[0324] In all of the above aspects and embodiments of a fusion protein or composition described, the C-terminal receptor-binding domain of PA can be, for example, PA63 or PAd4. [0325] In all of the above aspects and embodiments of a fusion protein or composition described, the PAd4, a PA or a C-terminal receptor binding domain of PA can be modified or mutated, for example, to be resistant to cleavage by a protease, such as Lys C. In all of the above aspects and embodiments of a fusion protein or composition described, the PAd4, a PA or a Cterminal receptor binding domain of PA of the described fusion protein is resistant to protease cleavage, such as Lys-C, lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, chymotrypsins, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C. For example,

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PCT/US2016/049106 one or more, up to and including each of the Lys residues at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 of SEQ ID NO: 1 (minus the 29 aa signal peptide in SEQ. ID. NO: 1) can be replaced, for example, by Arg or His. In other words, one or more, up to and including each of the Lys residues in the PAd4 domain at positions 623, 642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1 can be replaced, for example, by Arg or His.

[0326] Other examples, of proteases which the PAd4 can be made resistant to but are not limited to are lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0327] (mPA—nociceptor-binding protein) fusion protein [0328] Further described herein is the engineering of mPA, which is a variant PA that has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function, as described, e.g., in U.S. Patent Application Publication No. 20150044210, incorporated herein by reference in its entirety) to be fused with molecules that can target nociceptor surface receptors or ion channels specifically. Accordingly, in one aspect, the engineered fusion protein comprises (a) an engineering mPA, and (b) a nociceptor-binding protein. In one embodiment, provided herein is a composition comprising a engineered fusion protein comprises (a) an engineering mPA, and (b) a nociceptor-binding protein. As examples, the nociceptor-binding protein can be a non-PA protein capable of binding the ANTRAX receptor on the nociceptor, or an antibody that binds a receptor or ion channel proteins on the cell surface of the nociceptor, or a protein ligand of a receptor on the cell surface of the nociceptor. As examples of the described engineered fusion protein, the mPA can be fused to NGF which targets and binds the NGF receptor, or mPA can be fused to antibodies or antibody fragments that specifically bind the Navi.7 channel which creates sodium ion pores on nociceptors. Navi.7 is usually expressed at high levels in two types of neurons, the nociceptive (pain) neurons at dorsal root ganglion (DRG) and trigeminal ganglion, and sympathetic ganglion neurons, which are part of the autonomic (involuntary) nervous system. When such a fusion protein comprising an mPA fused to nociceptor-binding protein is used in conjunction with another fusion protein comprising LFn or EFn or EF or LF, e.g., LFn fused to BTx, or LFn fused to TTx, or EFn fused to BTx, or EFn fused to the TTx, and when the mPA/LFn or EFn interaction occurs between the first fusion protein and the second fusion protein, the toxins are specifically directed to nociceptors by the

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PCT/US2016/049106 nociceptor-binding protein of the fusion protein, and the toxin enters the cytosol by way of the mPA/LFn or EFn interaction.

[0329] Also provided herein are native PA or mutant PA (mPA, which denotes a PA that has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function), fused with molecules that can target nociceptor surface molecules in combination with FF or EF. In some embodiments, the fusion protein comprising an mPA fused to a nociceptor-binding protein is used specifically in conjunction with FF or EF. MAP kinases and their signaling pathways have been shown to be important for chronic pain development in mouse models. FF specifically inhibits MAP kinase signaling. In one embodiment, PA or mPA in combination with FF can be used to specifically target MAP kinase signaling in nociceptors to block pain.

EF activates adenylate cyclase, which has also been linked to pain development. One can also target adenylate cyclase in pain by using PA or mPA in combination with EF.

[0330] Navi .8 and Navi .9 can also be used as target receptors for the nociceptor-binding protein of a fusion protein as described herein. In other embodiments of the engineered fusion protein described herein, the nociceptor-binding protein part of the fusion protein binds Navi.8 or Navi.9.

[0331] In any of the above aspects and embodiments of a fusion protein or composition described herein comprising an FFn or EFn, or FF or EF, and embodiments of a fusion protein or composition described herein comprising PA or PA fragments, an oligomeric form of PA formed from proteolytically activated PA (e.g., PA63) or mPA can be substituted for monomeric PA to increase avidity for receptor-bearing cells. The toxin effector moiety can be bound to the PA oligomeric form before administering, or injected separately.

[0332] In another aspect, described herein is an engineered fusion protein comprising: a first domain comprising a polypeptide selected from the group consisting of:

i) an anthrax toxin protective antigen (PA) moiety; or ii) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor; and a second domain comprising a polypeptide selected from the group consisting of:

iii) an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)) optionally fused with an anthrax toxin translocation peptide;

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PCT/US2016/049106 iv) an intracellularly acting toxin catalytic domain optionally fused with an anthrax toxin translocation peptide; or

v) an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF). [0333] In one embodiment, the first domain and the second domain are fused together with a linker peptide. In one embodiment, the linker peptide is 1-20 amino acids long. In another embodiment, the linker peptide is stable in human serum for at least 1 minute.

[0334] In another embodiment, the first domain of the fusion protein serves as the targeting moiety (TM) of the fusion protein. The targeting moiety functions to direct the toxin to the nociceptor neuron via a cell surface marker enriched on the nociceptor. Non-limiting examples include, but are not limited to the abundant ANTXR2 receptor, NGF receptor, and/or the Navi.7, Navi.8, or Navi.9 ion channels expressed on the surface of nociceptors. In one embodiment, the targeting moiety is one that is capable of binding to a binding site on the nociceptor neuron, which binding site is capable of undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron, and wherein the nociceptor neuron expresses a SNARE protein which is subsequently proteolytically cleaved by the toxin of the second domain. In another embodiment, the targeting moiety is one that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses sodium or calcium, or both sodium and calcium, ion channels (e.g., Navi.7, Navi.8, and Navi.9 ion channels), or expresses ANTXR2 receptor or NGF receptor. In one embodiment, the binding site on the nociceptor neuron is, accordingly, ANTXR2 receptor, NGF receptor, Navi.7,

Navi.8, or Navi.9 ion channel.

[0335] The molecule capable of specifically targeting a nociceptor surface receptor, such as ANTXR2, or an ion channel receptor can be, e.g. a polynucleotide (e.g. an aptamer), a polypeptide, an antibody or antigen-binding fragment thereof, or an affibody. Affibody molecules are small proteins engineered to bind to a large number of target proteins or peptides with high affinity, imitating monoclonal antibodies, and are therefore a member of the family of antibody mimetics. In some embodiments, the molecule can be an antibody reagent, e.g. an antibody, monoclonal antibody, and/or antigen-binding portion thereof. Nociceptor surface receptors and/or nociceptor ion channel receptors are known in the art and are described in, e.g., Gohar. Modulator 2005 19:9-13; Bennaroch. Neurology 2015 10; Simon et al. The Nociceptive Membrane. Academic Press 2011; each of which is incorporated by reference herein in its entirety. Non-limiting examples of nociceptor surface receptors and/or nociceptor ion channel

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PCT/US2016/049106 receptors include, e.g., NGF receptor (NGFR) (e.g. NCBI Gene ID: 4804) Navi.7 (e.g. NCBI Gene ID: 6335), Navi.8 (e.g. NCBI Gene ID: 6336), or Navi.9 (e.g. NCBI Gene ID: 11280).

All database sequences as referred herein and throughout the specification by sequence reference numbers are incorporated herein by reference in their entirety. The database reference numbers and sequences are as set forth in the databases on the filing date of this application. In one embodiment of any aspect involving a molecule capable of specifically targeting a nociceptor surface receptor, the molecule can be an antibody reagent that specifically binds to the NGF receptor and/or an antibody reagent that specifically binds to Navi .7, Navi .8 or Navi .9. In some embodiments of any such aspect, in order to decrease off-target effects, multiple molecules capable of specifically targeting a nociceptor surface receptor or an ion channel receptor can be present in the same fusion protein and/or composition. The composition may also comprise two, three or more fusion proteins with different targeting moieties.

[0336] In one embodiment of any of the aspects described herein that involve a PA polypeptide, the pore-forming ability of the PA is desired to be targeted without using PA’s ability to specifically bind ANTXR2. Accordingly, in one embodiment of any aspect involving a PA polypeptide, the composition can comprise a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native ANTXR2-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor. By way of non-limiting example, the PAd4 domain of PA can be deleted and/or altered to block the receptor-binding function. By way of further non-limiting example, mPA can comprise N682A and/or D683 A (relative to the sequence of SEQ ID NO: 1 after the removal of the signal peptides at aa 1-29 residues) (see, e.g., Rosovitz MI, et al. 2003. Alanine-scanning mutations in domain 4 of anthrax toxin protective antigen (PAd4) reveal residues important for binding to cellular receptor and to a neutralizing monoclonal antibody. I. Biol. Chem. 278:30936 -30944; which is incorporated by reference herein in its entirety). Various methods of altering polypeptide sequences and/or engineering proteins to comprise desired mutations are known in the art, and examples of them are described elsewhere herein.

[0337] In one embodiment of an engineered fusion protein described herein, the second domain of the fusion protein is the toxin effector moiety of the fusion protein. Depending upon the toxin protein, the toxin effector moiety functions to disrupt cell signaling on the nociceptors and/or blocks the release of neurotransmitters from the nociceptors or kills the nociceptors. The toxin

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PCT/US2016/049106 effector moiety can be a non-cytotoxic protease that targets one or more SNARE proteins on vesicles (e.g., BTx and TTx), MAP kinases (EF and LF), etc.

[0338] As described herein, the inventors have discovered that the anthrax protective antigen can selectively target nociceptor neurons, binding to them and forming a pore capable of membrane transport. By coupling (either physically or functionally), an anthrax toxin protective antigen and an appropriate toxin, the nociceptor neurons can be killed and/or disabled or the pain signal can be blocked. Such compositions can be used, e.g. to treat pain, e.g., by disabling cell signaling or synaptic transmission in nociceptor neurons without substantial offtarget effects on the rest of the nervous system. Moreover, use of this system allows a pain treatment without the debilitating side effect of substance abuse.

[0339] In certain aspects, the fusion proteins described herein can comprise a toxin. As used herein, “toxin” refers to a compound produced by an organism which causes or initiates the development of a noxious, poisonous or deleterious effect in a host cell presented with the toxin. Such deleterious conditions may include inhibition of key cellular functions, inhibition of cell metabolism, and/or cell death.

[0340] In some embodiments of all the aspects described herein involving a toxin, the toxin can be an inhibitor cysteine knot (ICK) toxin, e.g., a conotoxin (CTx).

[0341] In some embodiments of all the aspects described herein involving a toxin, the toxin can be an intracellularly acting toxin and/or an intracellularly acting toxin catalytic domain.

Suitable bacterial toxins can include those with proteolytic activity against, e.g., SNARE proteins to prevent neurotransmitter release, or toxins that are cytotoxic to neurons. Nonlimiting examples of suitable toxins can include bacterial toxins such as, e.g., diphtheria toxin (DTx) (e.g. NCBI Gene ID: 2650491; SEQ ID NO: 2); Pseudomonas aeruginosa exotoxin A (PTx or PE) (e.g. NCBI Gene ID: 877850; SEQ ID NO: 3); botulinium toxin (BTx) (e.g. NCBI Gene ID: 5398487; SEQ ID NO: 4); tetanus toxin (TTx) (e.g. NCBI Gene ID: 17583237; SEQ ID NO: 5) shiga toxin (e.g. Shigella Stx (e.g., GenBank accession numbers CAC05622 and CAC05623) Stx-1 (e.g. GenBank accession numbers 32400300 and 32400299) and/or Stx-2 (e.g. GenBank accession numbers 161511882 and 161511883) , anthrax lethal toxin (lethal factor), and/or anthrax edema toxin (edema factor). A further non-limiting example of a suitable toxin is ricin toxin (e.g. NCBI Gene ID: 8287993).

[0342] In some embodiments of all the aspects described herein, the toxin can be an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF).

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PCT/US2016/049106 [0343] In some embodiments of all the aspects described herein, multiple toxins can be present in the same fusion protein and/or composition as described herein.

[0344] In some embodiments, an effector moiety includes a toxin that comprises a translocation domain (TL) therein. In one embodiment, the TL is capable of translocating the fusion protein from within an endosome, across the endosomal membrane and into the cytosol of a nociceptor neuron. In some embodiments, the TL is the anthrax translocation signal peptide (LLn or ELn), also referred to herein as the anthrax toxin translocation peptide, a H_N domain of BTx (serotypes included) or the H_N domain of TTx, or a polycationic sequence such as KKK, KKKKKK (SEQ ID NO: 59), KKKKKKKK (SEQ ID NO: 60), HHH, HHHHHH (SEQ ID NO: 61), HHHHHHHH (SEQ ID NO: 62), RRR, RRRRRR (SEQ ID NO: 63), or RRRRRRRR (SEQ ID NO: 64). See US Patent Application Publication No: US 2003/0202989, which is incorporated here by reference in its entirety. In other embodiments, the TL is a clostridial neurotoxin translocation domain, H_N, derived from a clostridial neurotoxin (CNT) family member protein. This includes the BTx serotypes, TTx and the newly discovered non-Clostridial botulinum-like toxin.

[0345] In some embodiments of all the aspects described herein, the toxin can be fused with an anthrax toxin translocation peptide, e.g., to enable the PA and/or mPA to recognize and transport the toxin into the nociceptor cell.

[0346] In some embodiments of all the aspects described herein, a translocation domain can be a polycationic sequence. Such sequences are discussed in the art; see, e.g., Blanke, Proc. Natl. Acad. Sci. USA 93, pp. 8437-8442, 1996, and US Patent Application Publication No: US 2003/0202989, each of which is incorporated here by reference in its entirety. A polycationic sequence can comprise at least 2 cationic amino acids, e.g., lysine, arginine, or histidine. In some embodiments of all the aspects described herein that employ a polycationic sequence for translocation function, the polycationic sequence can comprise at least about 3, about 6, or about 8 cationic amino acids. In some embodiments of all the aspects described herein that employ a polycationic sequence for translocation function, the polycationic sequence can comprise the sequence KKK, KKKKKK(SEQ ID NO: 59), or KKKKKKKK (SEQ ID NO: 60). In some embodiments of all the aspects described herein that employ a polycationic sequence for translocation function, the polycationic sequence can comprise the sequence HHH, HHHHHH (SEQ ID NO: 61), or HHHHHHHH (SEQ ID NO: 62). In some embodiments of all the aspects described herein that employ a polycationic sequence for translocation function, the polycationic

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PCT/US2016/049106 sequence can comprise the sequence RRR, RRRRRR (SEQ ID NO: 63), or RRRRRRRR (SEQ ID NO: 64).

[0347] In some embodiments of toxin fusion proteins as described herein, a first fusion protein domain comprises an anthrax toxin protective antigen (PA) moiety and a second fusion protein domain comprises an anthrax toxin translocation peptide fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)). In other embodiments of a first fusion protein domain, the the anthrax toxin translocation peptide is replaced with a clostridial neurotoxin translocation domain, H_N, or a polycationic sequence.

[0348] In some embodiments of toxin fusion proteins as described herein, the first domain comprises a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor, and the second domain comprises an anthrax toxin translocation peptide fused with an intracellularly-acting toxin catalytic domain. In other embodiments of a first fusion protein domain, the the anthrax toxin translocation peptide is replaced with a clostridial neurotoxin translocation domain, H_N, or a polycationic sequence. [0349] In some embodiments of toxin fusion proteins as described herein, a first domain comprises: i) an anthrax toxin protective antigen (PA) moiety; or ii) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor; and a second domain comprises an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF).

[0350] In another aspect, described herein is an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (Pad4) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

[0351] In order to form a functional pore, PA and/or mPA must oligomerize. Accordingly, in some embodiments of any of the aspects described herein that involve a PA polypeptide, the PA or mPA can in an oligomeric form. In some embodiments of any of the aspects described herein that involve a PA polypeptide, the PA or mPA can be in an oligomeric form prior to administration to a subject and/or prior to coming in contact with a nociceptor cell.

[0352] Linkers — A linker may be used to connect two or more domains or portions of a polypeptide as described herein. Linker molecules (linkers) may be peptides, which consist of one to multiple amino acids, or non-peptide molecules. Examples of peptide linker molecules

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PCT/US2016/049106 useful in the polypeptides described herein include glycine-rich peptide linkers (see, e.g., US 5,908,626), wherein more than half of the amino acid residues are glycine. Preferably, such glycine-rich peptide linkers consist of about 20 or fewer amino acids.

[0353] Linker molecules may also include non-peptide or partial peptide molecules. For instance, the peptides can be linked to peptides or other molecules using well known crosslinking molecules such as glutaraldehyde or EDC (Pierce, Rockford, Illinois).

[0354] In some embodiments of the fusion proteins described herein, the various domains and moieties, TM, TL, PAd4, PA fragments, LF, LFn, EF, EFn, mPA, various types of toxin (BTx incuding the various serotypes, TTx, AB toxins, Ricin toxin, Cholera toxin, PE, Shiga toxin, DT, conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin) etc. are joined together in the respective fusion protein with a linker peptide. Examples of linker peptide include, but are not limited to:

FHYDRNNIAVGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTE (SEQIDNO: 65); VEIEDTE (SEQ ID NO: 66), KDIRKILSGYIVEIEDTE (SEQIDNO: 67); steglllnidkdirkilsgyiveiedte (SEQIDNO: 68), evkqenrllneses(SEQ ID NO: 69); and VGADESWKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTE (SEQ ID NO: 70).

[0355] Flexible linkers are generally composed of small, non-polar or polar residues such as Gly, Ser and Thr. In one embodiment of a fusion protein described herein that includes a linker, the linker peptide comprises at least one amino acid that is Gly or Ser. In one embodiment of a fusion protein described herein that includes a linker, the linker is a flexible polypeptide between 1 and 25 residues in length. Common examples of flexible peptide linkers include (GGS) „, where n = 1 to 8, or (Gly4Ser)n repeat where n=l-8 (SEQ ID NO:57), preferably, n=3, 4, 5, or 6, that is (Gly-Gly-Gly-Gly-Ser)n, where n indicates the number of repeats of the motif. For example, the flexible linker is (GGS)₂, GGSGGS (SEQ ID NO: 58).

[0356] In one embodiment of a fusion protein described herein that includes a linker, the linker peptide is 1-20 amino acids long. In one embodiment, the linker peptide is stable in human serum for at least 1 minute. In one embodiment, the linker peptide does not comprise Lys and/or Arg.

[0357] In one embodiment of a fusion protein including a linker and PAd4, the linker appended to the N-terminus of PAd4 is less than 20 amino acids in length and is comprised of at least three amino acids Gly, Ser, and Ala.

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PCT/US2016/049106 [0358] In one embodiment of a fusion protein including a linker and PAd4, the linker appended to the N-terminus of PAd4 is less than 20 amino acids in length and is comprised of at least four amino acids Gly, Ser, Thr, and Ala.

[0359] In one embodiment of a fusion protein including a linker, the linker is stable in human serum for at least 1 minute and is less than 20 amino acids in length.

[0360] Bifunctional cross-linking molecules are linker molecules that possess two distinct reactive sites. For example, one of the reactive sites of a bifunctional linker molecule may be reacted with a functional group on a peptide to form a covalent linkage and the other reactive site may be reacted with a functional group on another molecule to form a covalent linkage. General methods for cross-linking molecules have been reviewed (see, e.g., Means and Feeney, Bioconjugate Chem., 1: 2-12 (1990)).

[0361] Homobifunctional cross-linker molecules have two reactive sites which are chemically the same. Examples of homobifunctional cross-linker molecules include, without limitation, glutaraldehyde; N,N'-bis(3-maleimido-propionyl-2-hydroxy-l,3-propanediol (a sulfhydrylspecific homobifunctional cross-linker); certain N-succinimide esters (e.g., discuccinimyidyl suberate, dithiobis(succinimidyl propionate), and soluble bis-sulfonic acid and salt thereof (see, e.g., Pierce Chemicals, Rockford, Illinois; Sigma-Aldrich Corp., St. Louis, Missouri).

[0362] Preferably, a bifunctional cross-linker molecule is a heterobifunctional linker molecule, meaning that the linker has at least two different reactive sites, each of which can be separately linked to a peptide or other molecule. Use of such heterobifunctional linkers permits chemically separate and stepwise addition (vectorial conjunction) of each of the reactive sites to a selected peptide sequence. Heterobifunctional linker molecules useful in the invention include, without limitation, m-maleimidobenzoyl-N-hydroxysuccinimide ester (see, Green et al., Cell, 28: 477487 (1982); Palker et al., Proc. Natl. Acad. Sci (USA), 84: 2479-2483 (1987)); m-maleimidobenzoylsulfosuccinimide ester; maleimidobutyric acid N-hydroxysuccinimide ester; and Nsuccinimidyl 3-(2-pyridyl-dithio)propionate (see, e.g., Carlos et al., Biochem. J., 173: 723-737 (1978); Sigma- Aldrich Corp., St. Louis, Missouri).

[0363] PAd4 domains - In one embodiment of a fusion protein comprising a PAd4 domain described herein, the fusion protein comprises about 2-10 PAd4 domains in tandem, or 1-5 PAd4 domains, or 2-5 PAd4 domains, etc., in tandem. In one embodiment of a fusion protein, approximately 1-60 consecutive amino acids from the N-terminal side of PA adjacent to the native PAd4 domain are further incorporated between the toxin moiety (e.g., BTx moiety, TTx

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PCT/US2016/049106 moiety, disulfide-containing peptide toxin moiety, AB toxin moiety, etc., and the PAd4 domain(s).

[0364] In one embodiment of a fusion protein comprising a PAd4 domain or a composition comprising a PAd4 domain described herein, the fusion protein further comprises domain 2 of PA (PAd2). The PAd2 domain can be found at amino acid residues 259-487 of the PA sequence (SEQ. ID. NO: 1). In another embodiment of a fusion protein comprising a PAd4 domain or a composition comprising a PAd4 domain described herein, the fusion protein further comprises domain 3 of PA (PAd3).

[0365] In one embodiment of a fusion protein comprising a PAd4 domain or a composition comprising a PAd4 domain described herein, the fusion protein further comprises a variant form of intact PA in which the furin cleavage site has been ablated by mutation (M), so that the PA is resistant to proteolytic activation and hence does not oligomerize.

[0366] In one embodiment of a fusion protein comprising a PA, or a PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 as described herein, or a composition comprising a fusion protein including a PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 as described herein, the PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2, the PA-derived protein is modified or mutated.

[0367] In one embodiment, the PAd4, the PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 is resistant to cleavage by a protease, such as Lys C. Other examples of proteases that the PA can be made resistant to include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0368] In one embodiment of a fusion protein comprising a PAd4, a PA or PA fragment thereof, or a C-terminal receptor binding domain of PA that binds ANTXR2 PA as described herein or a composition comprising a fusion protein including a PAd4, a PA or PA fragment thereof, or a Cterminal receptor binding domain of PA that binds ANTXR2 as described herein, the PAderived protein is resistant to cleavage by chymotrypsin/thermolysin. This can also be optionally mutated to prevent potential chymotrypsin cleavage. The chymotrypsin/thermolysin sensitive site is located at ³¹³FFD³¹⁵.

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PCT/US2016/049106 [0369] Other examples of proteases that the PA can be made resistant to include but are not limited to lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0370] In one embodiment, one or more of the Lys residues in the PAd4 domain or a PA, or a mPA at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 have been replaced by Arg or His. (The numbering is referencing SEQ ID NO: 1 after the removal of the N-terminal the 29 aa signal peptide, SEQ. ID. NO: 1 is sequence P13423 that has the 29 aa signal peptide. In other words, one or more, up to and including each of the Lys residues in the PAd4 domain of PA at positions 623, 642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1 can be replaced, for example, by Arg or His.

[0371] In one embodiment, one or more of the Asn residues in the PAd4 domain at position 630, 742, and/or 748 of SEQ ID NO: 1 has been replaced by Asp.

[0372] PA — In one embodiment of a fusion protein described herein comprising a PA domain or a composition comprising such a fusion protein, the PA is a variant or mutant form of PA that is resistant to furin cleavage (PA^funn') or is mutated to block its native receptor-binding function (mPA). In one embodiment, the PA furin cleavage site comprising amino acid residues RKKR has been replaced by a furin-resistant amino acid sequence, wherein RKKR are the residues 164167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO: 1. In one embodiment, the furin-resistant amino acid sequence is SSSR (SEQ ID NO: 32), SSSS (SEQ ID NO: 33), or RRSS (SEQ ID NO: 149). In one embodiment, PA has one or two mutations that block the receptor-binding function of PA, N711A and/or D712A; the amino acid numbering is according to SEQ ID NO: 1, the entire PA including the 29 residue signal peptide. The two mutations are N682A/D683 A in the PA sequence numbered without the 29 residue signal peptide.

[0373] In one embodiment of a fusion protein described herein comprising a PA, the PA is modified or mutated, for example, to be resistant to cleavage by a protease, e.g., Lys-C or furin. For example, the one or more of the Lys residues in the PAd4 domain at positions 594, 613, 633, 637,653, 673, 679, 680, 684, 695, 703, 722, 723,729, and 730 has been replaced by Arg or His, wherein the numbering refers to that of SEQ ID NO: 1 after minusing the 29 aa signal peptide in SEQ. ID. NO:1, or at positions 623, 642, 662, 666,682, 702, 708, 709, 713, 724, 732, 751, 752,758, and 759 in SEQ. ID. NO:1. In other embodiments of a fusion protein described herein comprising a PA, the PA is resistant to cleavage by a protease, wherein the protease is selected

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PCT/US2016/049106 from Lys-C, lysyl peptidase, trypsin, Enterokinase, clostripain, elastase, chymotrypsins, thermolysin, endoproteinase Lys-C, and endoproteinase Arg-C.

[0374] In one embodiment of a fusion protein described herein, the fusion protein further comprises at least one D-amino acid at the N-terminus of the fusion protein.

[0375] In one embodiment of a fusion protein described herein, the fusion protein is glycosylated.

[0376] In one embodiment of a fusion protein described herein, the fusion protein is nonglycosylated.

Production of engineered fusion protein [0377] The various polypeptides (e.g. fusion polypeptides or first or second polypeptides) described herein can be purified from natural sources and/or produced recombinantly using any method that is known in the art. For examples, the engineered fusion proteins described herein can be produced by recombinant molecular cloning that is known in the art. By way of nonlimiting example, PA can be purified from the Steme strain of B. anthracis or synthesized by other known means. In B. anthracis, the gene for PA is located on a plasmid referred to as pXOl (Milne et al., 1994, J. of Biol. Chem. 269(32):20607-20612; which is incorporated by reference herein in its entirety). Methods of recombinant expression are well-known in the art.

In some embodiments, PA63 can be substituted for full-length PA. The PA63 fragment may be purified from trypsin-treated PA by anion exchange chromatography (Milne et al., 1994, supra). PA encoding gene has been cloned and sequenced (Vodkin, et al., 1983, Cell 34:693-697; which is incorporated by reference herein in its entirety) and may be used to obtain purified PA polypeptide.

[0378] The fusion of two polypeptide moieties is effected either by recombinant DNA technology, or using a sortase reaction (see e.g., WO 2012096926, WO2013177231, WO2014088928,; US Patent No: 9079952, and US Patent Application Publications No: US 2013/0336974 and US 2015/0267186, each of which is incorporated by reference herein in its entirety.), or other method of chemical linking/biochemical conjugation that is known in the art. [0379] Recombinant DNA and molecular biology techniques can be use to produce the described engineered fusion protein. The process of cloning the cDNA segments and sequences that encode the respective protein domains and moieties, e.g., TM, TL, PAd4, PA fragments, LF, LFn, EF, EFn, mPA, various types of toxin (BTx, TTx, AB toxins, Ricin toxin, Cholera toxin, PE, Shiga toxin, DT, conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II

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PCT/US2016/049106 toxin) etc., the production of DNA sequences encoding the various peptide linkers, the ligation of different cDNA sequences, the construction of the expression vectors (e.g., plasmid, bacteriophage, phagmid, or viral vector) for the various engineered fusion proteins, and the protein expression and purification of various recombinant engineered fusion proteins can be performed by conventional recombinant molecular biology and protein biochemistry techniques such as described in Lewin's Genes XI, published by Jones & Bartlett Publishers, 2014 (ISBN1449659055); Michael Richard Green and Joseph Sambrook, Molecular Cloning: A Laboratory Manual, 4th ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., USA (2012) (ISBN 1936113414); Davis et al., Basic Methods in Molecular Biology, Elsevier Science Publishing, Inc., New York, USA (2012) (ISBN 044460149X); Current Protocols in Molecular Biology (CPMB), Frederick M. Ausubel (ed.), John Wiley and Sons, 2014 (ISBN 047150338X, 9780471503385), Current Protocols in Protein Science (CPPS), John E. Coligan (ed.), John Wiley and Sons, Inc., 2005, which are all incorporated by reference herein in their entireties. [0380] The engineered fusion proteins and peptide linkers can be produced by any method known in the art for the synthesis of a fusion protein, in particular, by chemical synthesis or by recombinant expression techniques.

[0381] The engineered fusion proteins of the invention can be produced by any method known in the art for the expression and purification of recombinant proteins.

[0382] Recombinant expression of engineered fusion proteins requires construction of an expression vector containing a polynucleotide that encodes the engineered fusion protein described herein. The polynucleotide can further sequences that encode additional amino acids for the purpose of protein purification or identifying or locating the engineered fusion protein in the expression system or during the protein purification process. Once a polynucleotide encoding an engineered fusion protein has been obtained, the vector for the production of the fusion protein can be produced by recombinant DNA technology using techniques well known in the art. Thus, methods for preparing a protein by expressing a polynucleotide containing a fusion protein-encoding nucleotide sequence are described herein. Methods which are well known to those skilled in the art can be used to construct expression vectors containing protein coding sequences and appropriate transcriptional and translational control signals. These methods include, for example, in vitro recombinant DNA techniques, synthetic techniques, and in vivo genetic recombination. The invention, thus, provides replicable vectors comprising a nucleotide sequence encoding a fusion protein of the invention, operably linked to a promoter.

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The expression vector is transferred to a host cell by conventional techniques and the transfected cells are then cultured by conventional techniques to produce an engineered fusion protein of the invention. Thus, the invention includes host cells containing a polynucleotide encoding a fusion protein, operably linked to a heterologous promoter.

[0383] A variety of host-expression vector systems can be utilized to express the fusion proteins of the invention. Such host-expression systems represent vehicles by which the coding sequences of interest can be produced and subsequently purified, but also represent cells which can, when transformed or transfected with the appropriate nucleotide coding sequences, express the fusion protein of the invention in situ. These include but are not limited to microorganisms such as prokaryotic bacteria (e.g., attenuated Bacillus anthracis strains, E. coli, B. subtilis) transformed with recombinant bacteriophage DNA, plasmid DNA or cosmid DNA expression vectors containing the fusion protein coding sequences; yeast (e.g., Saccharomyces, Pichia) transformed with recombinant yeast expression vectors containing the fusion protein coding sequences; insect cell systems infected with recombinant virus expression vectors (e.g., baculovirus) containing the fusion protein coding sequences; plant cell systems infected with recombinant virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with recombinant plasmid expression vectors (e.g., Ti plasmid) containing the fusion protein coding sequences; or mammalian cell systems (e.g., COS, CHO, BHK, 293, 3T3 cells) harboring recombinant expression constructs containing promoters derived from the genome of mammalian cells (e.g., metallothionein promoter) or from mammalian viruses (e.g., the adenovirus late promoter; the vaccinia virus 7.5K promoter). Bacterial cells such as E.coli and attenuated B.anthracis strains are especially useful for the expression of the fusion proteins described herein.

[0384] In bacterial systems, a number of expression vectors can be advantageously selected depending upon the use intended for the fusion protein being expressed. For example, when a large quantity of such a protein is to be produced, for the generation of pharmaceutical compositions of a fusion protein, vectors which direct the expression of high levels of a fusion protein products that are readily purified can be desirable. Such vectors include, but are not limited, to the E. coli expression vector pUR278 (Ruther et al., EMBO J., 2:1791 (1983)), in which the fusion protein coding sequence can be ligated individually into the vector in frame with the lacZ coding region so that a fusion protein is produced; pIN vectors (Inouye & Inouye, Nucleic Acids Res., 13:3101-3109 (1985); VanHeeke& Schuster, J. Biol. Chem., 24:5503-5509

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PCT/US2016/049106 (1989)); and the like pGEX vectors can also be used to express foreign polypeptides as fusion proteins with glutathione S-transferase (GST). In general, such fusion proteins are soluble and can easily be purified from lysed cells by adsorption and binding to matrix glutathione-agarose beads followed by elution in the presence of free glutathione. The pGEX vectors are designed to include thrombin or factor Xa protease cleavage sites so that the cloned target gene product can be released from the GST moiety. Alternately, the pET expression vectors can be used for producing histidine-tagged recombinant proteins, where the histidine-tagged recombinant proteins can be affinity purified by a nickel column. Expression of recombinant proteins in Pichiapastoris is described by Holliger, P. (2002)Meth. Mol. Biol., 178:349-57, and is hereby incorporated by reference. Examples of recombinant expression and purification of engineered anthrax containing fusion proteins and BTx- or TTx- containing fusion proteins are known in the art, and are described in more detail in, e.g., International Patent Publication WO 2012/096926 ani WO 2015/166242; US Patent No: 9079952, 9234011, 9243301, and US Patent Application Publications No: US 2013/0336974, US 2015/0267186, US 2015/0044210, each of which is incorporated by reference herein in its entirety.

[0385] In an insect system, Autographa californica nuclear polyhedrosis virus (AcNPV) is used as a vector to express foreign genes. The virus grows in Spodoptera frugiperda cells. The fusion protein coding sequence can be cloned individually into non-essential regions (for example the polyhedrin gene) of the virus and placed under control of an AcNPV promoter (for example the polyhedrin promoter).

[0386] Large scale expression of heterologous proteins in the algae Chlamydomonas reinhardtii are described by Griesbeck C. et. al. 2006 Mol. Biotechnol. 34:213-33; Manuell AL et. al. 2007 Plant Biotechnol J. Eprint; Franklin SE and Mayfield SP, 2005, Expert Opin Biol Ther. Feb;5(2):225-35; Mayfield SP and Franklin SE, 2005 Vaccine Mar 7;23(15): 1828-32; and Fuhrmann M. 2004, Methods Mol Med. 94:191-5. Foreign heterologous coding sequences are inserted into the genome of the nucleus, chloroplast and mitochodria by homologous recombination. The chloroplast expression vector p64 carrying the most versatile chloroplast selectable marker aminoglycoside adenyl transferase (aadA), which confers resistance to spectinomycin or streptomycin, can be used to express foreign protein in the chloroplast. Biolistic gene gun method is used to introduce the vector in the algae. Upon its entry into chloroplasts, the foreign DNA is released from the gene gun particles and integrates into the chloroplast genome through homologous recombination.

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PCT/US2016/049106 [0387] In mammalian host cells, a number of viral-based expression systems can be utilized. In cases where an adenovirus is used as an expression vector, the coding sequence of fusion protein can be ligated to an adenovirus transcription/translation control complex, e.g., the late promoter and tripartite leader sequence. This chimeric gene can then be inserted in the adenovirus genome by in vitro or in vivo recombination. Insertion in a non-essential region of the viral genome (e.g., region El or E3) will result in a recombinant virus that is viable and capable of expressing the fusion protein in infected hosts. See, e.g., Logan & Shenk, Proc. Natl. Acad. Sci. USA, 81:355359 (1984). Specific initiation signals can also be required for efficient translation of inserted fusion protein coding sequences. These signals include the ATG initiation codon and adjacent sequences. Furthermore, the initiation codon must be in phase with the reading frame of the desired coding sequence to ensure translation of the entire insert. These exogenous translational control signals and initiation codons can be of a variety of origins, both natural and synthetic. The efficiency of expression can be enhanced by the inclusion of appropriate transcription enhancer elements, transcription terminators, etc. (see, Bittner et al., Methods in Enzymol., 153:51-544(1987)).

[0388] In addition, a host cell strain can be chosen which modulates the expression of the inserted sequences, or modifies and processes the gene product in the specific fashion desired. Such modifications (e.g., glycosylation) and processing (e.g., cleavage) of protein products can be important for the function of the protein. Different host cells have characteristic and specific mechanisms for the post-translational processing and modification of proteins and gene products. Appropriate cell lines or host systems can be chosen to ensure the correct modification and processing of the foreign protein expressed. To this end, eukaryotic host cells which possess the cellular machinery for proper processing of the primary transcript, glycosylation, and phosphorylation of the gene product can be used. Such mammalian host cells include but are not limited to CHO, VERY, BHK, Hela, COS, MDCK, NSO, 293, 3T3, W138, and in particular, breast cancer cell lines such as, for example, BT483, Hs578T, HTB2, BT20 and T47D, and normal mammary gland cell line such as, for example, CRL7030 and Hs578Bst.

[0389] For long-term, high-yield production of recombinant proteins, stable expression is preferred. For example, cell lines which stably express the fusion protein can be engineered. Rather than using expression vectors which contain viral origins of replication, host cells can be transformed with DNA controlled by appropriate expression control elements (e.g., promoter, enhancer, sequences, transcription terminators, polyadenylation sites, etc.), and a selectable

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PCT/US2016/049106 marker. Following the introduction of the foreign DNA, engineered cells can be allowed to grow for 1-2 days in an enriched media, and then are switched to a selective media. The selectable marker in the recombinant plasmid confers resistance to the selection and allows cells to stably integrate the plasmid into their chromosomes and grow to form foci which in turn can be cloned and expanded into cell lines. This method can advantageously be used to engineer cell lines which express the fusion protein. Such engineered cell lines can be particularly useful in screening and evaluation of compounds that interact directly or indirectly with the fusion protein.

[0390] A number of selection systems can be used, including but not limited to the herpes simplex virus thymidine kinase (Wigler et al., Cell, 11:223 (1977)), hypoxanthine-guanine phosphoribosyltransferase (Szybalska& Szybalski, Proc. Natl. Acad. Sci. USA, 48:202 (1992)), and adenine phosphoribosyltransferase (Towy et al., Cell, 22:817 (1980)) genes can be employed in tk-, hgprt- or aprt- cells, respectively. Also, anti-metabolite resistance can be used as the basis of selection for the following genes: dhfr, which confers resistance to methotrexate (Wigler et al., Proc. Natl. Acad. Sci. USA, 77:357 (1980); O'Hare et al., Proc. Natl. Acad. Sci. USA, 78:1527 (1981)); gpt, which confers resistance to mycophenolic acid (Mulligan & Berg, Proc. Natl. Acad. Sci. USA, 78:2072 (1981)); neo, which confers resistance to the aminoglycoside G-418; Wu and Wu, Biotherapy, 3:87-95 (1991); Tolstoshev, Ann. Rev. Pharmacol. Toxicol., 32:573-596 (1993); Mulligan, Science, 260:926-932 (1993); and Morgan and Anderson, Ann. Rev. Biochem., 62:191-217 (1993); Can, 1993, TIB TECH 11(5): 155-215); and hygro, which confers resistance to hygromycin (Santerre et al., Gene, 30:147 (1984)). Methods commonly known in the art of recombinant DNA technology can be routinely applied to select the desired recombinant clone, and such methods are described, for example, in Current Protocols in Molecular Biology, Ausubel et al., eds. (John Wiley & Sons, NY 1993); Kriegler, Gene Transfer and Expression, A Faboratory Manual (Stockton Press, NY 1990); and Current Protocols in Human Genetics, Dracopoli et al., eds. (John Wiley & Sons, NY 1994), Chapters 12 and 13; Colberre-Garapin et al., J. Mol. Biol., 150:1 (1981), which are incorporated by reference herein in their entireties.

[0391] The expression levels of an engineered fusion protein described herein can be increased by vector amplification (for a review, see Bebbington and Hentschel, The use of vectors based on gene amplification for the expression of cloned genes in mammalian cells in DNA cloning, Vol. 3. (Academic Press, New York, 1987)). When a marker in the vector system expressing the

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PCT/US2016/049106 fusion protein is amplifiable, increase in the level of inhibitor present in culture of host cell will increase the number of copies of the marker gene. Since the amplified region is associated with the nucleic acid sequence encoding the engineered fusion protein described herein, production of the engineered fusion protein will also increase (Crouse et al., Mol. Cell. Biol., 3:257 (1983)). [0392] The host cell can be co-transfected with two expression vectors of the invention, the first vector encoding a first fusion protein and the second vector encoding a second fusion protein. The two vectors can contain identical selectable markers which enable equal expression of a fusion polypeptides. Alternatively, a single vector can be used which encodes, and is capable of expressing, both fusion polypeptides. A bi-cistronic expression cassette encoding both fusion polypeptides is inserted into the expression vector (Proudfoot, Nature, 322:52 (1986); Kohler, Proc. Natl. Acad. Sci. USA, 77:2197 (1980)).

[0393] Once a fusion protein of the invention has been produced by an animal or recombinantly expressed, it can be purified by any method known in the art for protein purification for example, by chromatography (e.g., ion exchange, affinity, particularly by affinity for the specific antigen after Protein A, and sizing column chromatography), centrifugation, differential solubility, or by any other standard technique for the purification of proteins. In addition, the engineered fusion protein described herein can be fused to heterologous polypeptide sequences described herein or otherwise known in the art, to facilitate purification.

[0394] For the purpose of affinity purification, relevant matrices for affinity chromatography, such as glutathione-, amylase-, and nickel- or cobalt- conjugated resins are used. Many of such matrices are available in “kit” form, such as the Pharmacia GST purification system and the QIAexpressTM system (QIAGEN®) useful with histidine-tagged fusion proteins. Tags can also facilitate the detection of the expressed recombinant fusion proteins. Examples of such tags include the various fluorescent proteins (e.g., GFP) as well as “epitope tags,” which are usually short peptide sequences for which a specific antibody is available. Well known epitope tags for which specific monoclonal antibodies are readily available include FLAG, influenza virus haemagglutinin (HA), and c-myc tags. In some cases, the fusion domains have a protease cleavage site, such as for Factor Xa or Thrombin, which allows the relevant protease to partially digest the fusion proteins and thereby liberate the recombinant proteins therefrom. The liberated proteins can then be isolated from the fusion domain by subsequent chromatographic separation. [0395] Accordingly, in one embodiment, encompassed herein is a nucleic acid sequence encoding any one of the fusion proteins described herein.

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PCT/US2016/049106 [0396] In one embodiment, provided herein is a vector comprising a nucleic acid sequence encoding any one of the fusion protein described herein. For examples, the vector can be a plasmid, a bacteriophage, a phagmid, a cosmid, a viral vector, or a viral particle. These vectors are known in the art. In one embodiment, provided herein is a plasmid comprising a nucleic acid sequence encoding any one of the fusion protein described herein. For example, the plasmid is a bacterial plasmid. In one embodiment of a vector described, the vector is an expression vector. For example, the plasmid (vector) is an expression plasmid for the recombinant protein expression in a bacteria, e.g., Escherichia coli. In one embodiment of an expression vector described, the expression vector is a bacterial expression vector. In one embodiment of an expression vector described, the expression vector is a prokaryotic expression vector. In one embodiment of an expression vector described, the expression vector is an eukaryotic expression vector. In one embodiment of an expression vector described, the expression vector is a mammalian expression vector. In one embodiment, the expression vector is a yeast expression vector.

[0397] In another embodiment, provided herein is a viral particle comprising a vector comprising a nucleic acid described in the preceding paragraph. In another aspect, provided herein is a viral particle comprising a a nucleic acid described in the preceding paragraph.

[0398] In one embodiment, provided herein is a cell comprising a nucleic acid sequence encoding any one of the fusion proteins described herein or a vector comprising a nucleic acid sequence encoding any one of the fusion proteins described herein. The cell can be a bacteria, a yeast cell, a mammalian cell etc. For example, an E. coli carrying a plasmid that comprises a nucleic acid encoding a fusion protein described herein. For example, for the recombinant protein expression of the a fusion protein encoded in the nucleic acid.

[0399] In another aspect, provided herein is a cell comprising a viral particle comprising a vector comprising a nucleic acid sequence encoding any one of the fusion proteins described herein. In another aspect, provided herein is a cell comprising a plasmid comprising a nucleic acid sequence encoding any one of the fusion proteins described herein. In another aspect, provided herein is a cell comprising a viral particle comprising a nucleic acid sequence encoding any one of the fusion proteins described herein.

[0400] In one embodiment, provided herein is a method of producing any one of the fusion proteins described herein, comprising (a) culturing a cell comprising a nucleic acid sequence encoding any one of the fusion proteins described herein, or a vector (e.g., a plasmid)

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PCT/US2016/049106 comprising a nucleic acid sequence encoding any one of the fusion proteins described herein, or a viral particle comprising a vector comprising a nucleic acid sequence encoding any one of the fusion proteins described, or a viral particle comprising a nucleic acid sequence encoding any one of the fusion proteins described herein herein, wherein the culturing is performed under conditions such that the fusion protein described is expressed; and (b) recovering the fusion protein.

[0401] In one embodiment, provided herein is a fusion protein produced by the method described herein, specifically, the method comprising (a) culturing a cell comprising a nucleic acid sequence encoding any one of the fusion proteins described herein or a vector (e.g., a plasmid) comprising a nucleic acid sequence encoding any one of the fusion proteins described herein, or a viral particle comprising a vector comprising a nucleic acid sequence encoding any one of the fusion proteins described, or a viral particle comprising a nucleic acid sequence encoding any one of the fusion proteins described herein herein, wherein the culturing is performed under conditions such that the fusion protein described is expressed; and (b) recovering the fusion protein.

[0402] In one embodiment of the method described for producing a fusion protein, the cell is a prokaryotic cell such as bacteria. In one embodiment of the method described for producing a fusion protein, the cell is a bacteria cell. In one embodiment, the bacteria is Escherichia coli (E. Coli). In another embodiment, the bacteria is an attenuated B. anthracis strains (e.g.CDC 684). [0403] In one embodiment of a method of producing a fusion protein described herein, the cell is a yeast cell. In one embodiment, the yeast is Saccharomyces cerevisiae. In one embodiment, the yeast is cell glycosylation deficient.

[0404] In one embodiment of a method of producing a fusion protein described herein, the yeast is glycosylation and protease deficient. In one embodiment, the protease is furin or furin-like protease.

[0405] In one embodiment of a method of producing a fusion protein described herein, the cell is a mammalian cell. In one embodiment, the mammalian cell is a COS cell, a CHO cell, or an NSO cell.

Compositions [0406] In one aspect, described herein is a composition comprising at least one engineered fusion protein as described herein. In one embodiment, the composition further comprises a pharmaceutically acceptable carrier, excipient or diluent.

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PCT/US2016/049106 [0407] In some aspects, any compositions described in the preceding paragraphs or any compositions comprising a fusion protein described in the preceding paragraphs is use for the treatment of pain. Treatment of pain can include administering more than one, i.e., several, of the different compositions described in the preceding paragraphs. For example, compositions comprising fusion proteins comprising LFn, LF, EFn, or EF, and where there is noceiceptor receptor binding protein present in the fusion protein, the composition would preferably be used in combination with a composition comprising a PA, a PA fragment, a PAd4 containing fragment of PA, or a C-terminal receptor binding domain of PA of PA.

[0408] In some embodiments, the composition can comprise two or more different engineered fusion proteins, e.g., fusion proteins with different first and/or second domains. Such mixtures of proteins can, e.g. reduce off-target effects and/or provide multiple mechanisms of inhibiting nociceptors to increase efficacy. In some embodiments, the two or more different engineered fusion proteins can be in oligomeric form such that the oligomeric complex comprises at least two different engineered fusion proteins. In some embodiments, a first engineered fusion protein has a first domain comprising an anthrax toxin protective antigen (PA) moiety; and a second engineered fusion protein has a first domain comprising a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor. In some embodiments, a composition as described herein can further comprise a pharmaceutically acceptable carrier or excipient.

[0409] When a polypeptide comprises an anthrax toxin translocation peptide, the translocation peptide can cause the polypeptide to be bound by and translocated across a membrane by PA and/or mPA present. Accordingly, the PA and/or mPA and the polypeptide to be translocated (e.g. a toxin) can be present as separate polypeptides. In one aspect then, described herein is a composition comprising:

(I) a first polypeptide selected from the group consisting of:

a) an anthrax toxin protective antigen (PA) moiety; and optionally

b) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor; and (II) a second polypeptide selected from the group consisting of:

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c) an anthrax translocation signal peptide fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx));

d) an anthrax translocation signal peptide fused with an intracellularly-acting toxin catalytic domain; and/or

e) an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF). [0410] In one embodiment of such a composition, the first polypeptide comprises an anthrax toxin protective antigen (PA) moiety and the second polypeptide comprises an anthrax toxin translocation peptide fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

[0411] In another embodiment of such a composition, the first polypeptide comprises a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptorbinding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor, and the second polypeptide comprises an anthrax toxin translocation peptide fused with an intracellularly-acting toxin catalytic domain. In othe embodiments of a second polypeptide, the the anthrax toxin translocation peptide is replaced with a clostridial neurotoxin translocation domain, H_N, or a polycationic sequence.

[0412] In another embodiment of such a composition, the first polypeptide comprises: i) an anthrax toxin protective antigen (PA) moiety; or ii) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor; and the second polypeptide comprises an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF).

[0413] In another embodiment of such a composition comprising a first and second polypeptide, the PA or mPA is in an oligomeric form. In another embodiment of such a composition comprising first and second polypeptides, the composition comprises both i) an anthrax toxin protective antigen (PA) moiety and ii) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor. In one embodiment, the i) anthrax toxin protective antigen (PA) moiety and ii) mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused, with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor, two different first polypeptides are in oligomeric form such that the

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PCT/US2016/049106 oligomeric complex comprises both polypeptides. In one embodiment, the composition further comprises a pharmaceutically acceptable carrier or excipient.

[0414] In one embodiment of any of the aspects described herein, the composition further comprises a native anthrax toxin protective antigen (PA) protein. In one embodiment, the PA protein is an oligomeric PA. In another embodiment, the oligomeric PA is bound to the fusion protein.

[0415] In one embodiments of any of the compositions comprising LFn, LF, EF or EFncontaining fusion proteins described herein, the composition further comprises a native anthrax toxin protective antigen (PA) protein. In one embodiment, the PA protein is an oligomeric PA.

In another embodiment, the oligomeric PA is bound to the fusion protein.

Uses of engineered fusion proteins and compositions for pain treatment [0416] Any compositions comprising a fusion protein described herein, used individually or in combinations, can be used for the treatment of pain. Similarly, any fusion protein described herein can be used for the treatment of pain. Moreover, it is envisioned that various combinations of the described compositions or various combinations of the described engineered fusion proteins would be used in the treatment of pain. The fusion proteins and compositions described herein can selectively bind to nociceptors and deliver toxins that kill and/or inhibit the nociceptor cells. In some embodiments, other neurons are not affected by the fusion proteins and/or compositions described herein.

[0417] In another aspect, provided herein is a method of manufacture of a pharmaceutical composition comprising one or more of the fusion proteins described in the preceding paragraphs and a pharmaceutically acceptable carrier or excipient.

[0418] In another aspect, provided herein is a fusion protein described in the preceding paragraphs for use in the manufacture of medicament for the treatment of pain. In one embodiment, the fusion protein is formulated with at least one pharmaceutically acceptable carrier or excipient.

[0419] In another aspect, provided herein is a fusion protein described in the preceding paragraphs for use in the treatment of pain. In one embodiment, the fusion protein is formulated with at least one pharmaceutically acceptable carrier or excipient.

[0420] Accordingly, in one aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a composition as described herein. More than one composition can be administered, either

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PCT/US2016/049106 stimultaneously or sequentially. For example, compositions comprising fusion proteins comprising LFn, LF, EFn, or EF, and where there is noceiceptor receptor binding protein present in the fusion protein, the composition would preferably be used in combination with a composition comprising a PA, a PA fragment, a PAd4 containing fragment of PA, or a Cterminal receptor binding domain of PA of PA.

[0421] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) a botulinum neurotoxin (BTx) or a tetanus neurotoxin (TTx), and (b) an anthrax toxin protective antigen (PA), or a C-terminal receptor-binding domain of PA, wherein part (a) and (b) are linked or fused together, or a composition comprising the fusion protein.

[0422] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a Binding Site on said nociceptor neuron, which Binding Site is capable of undergoing endocytosis to be incorporated into an endosome within said nociceptor neuron, and wherein said nociceptor neuron expresses said SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of said nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain.

[0423] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA or PA fragment thereof binds a receptor expressed on the nociceptor neuron, or a composition comprising the fusion protein. [0424] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising (a) a disulfide-containing peptide toxin which is capable of blocking ion channels in a nociceptor neuron; and (b) a targeting moiety (TM) that is capable of binding

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PCT/US2016/049106 to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses the ion channels therein, or a composition comprising the fusion protein.

[0425] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) a disulfide-containing peptide toxin which is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment that binds a receptor expressed on the nociceptor neuron, or a composition comprising the fusion protein.

[0426] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) an AB toxin; (b) an anthrax toxin protective antigen (PA) or a fragment thereof, wherein the PA or fragment thereof binds a receptor expressed on a nociceptor neuron; and (c) a translocation domain (TL) that is capable of translocating the toxin (a protease) from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron, or a composition comprising the fusion protein.

[0427] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising a botulinum neurotoxin (BTx) moiety comprising an N-terminal enzymatic domain (LC or L chain) and an intermediate pore-forming/translocation-domain (HN) of the BTx, linked to a C-terminal receptor-binding domain of anthrax toxin protective antigen (PA), or a composition comprising the fusion protein.

[0428] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising: (a) a botulinum neurotoxin N-terminal enzymatic domain of a botulinum neurotoxin (BTx) moiety, and (b) an N-terminal domain of anthrax toxin lethal factor (LFn), which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA; or the N-terminal domain of anthrax toxin edema factor (EFn), which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA, wherein part (a) is linked N-terminally or C-terminally or both N-terminally and C-terminally to part (b), or a composition comprising the fusion protein.

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PCT/US2016/049106 [0429] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising anthrax toxin protective antigen (PA), an anthrax toxin protective antigen C-terminal receptor binding domain (PAd4), or a nociceptor neuron-binding protein, linked to a disulfide-containing peptide toxin, or a composition comprising the fusion protein. [0430] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising a disulfide-containing peptide toxin operably linked N-terminally or C-terminally or both N-terminally and C-terminally, or chemically crosslinked at one or more sites, to the N-terminal domain (LFn) of anthrax toxin lethal factor, which domain binds to oligomeric forms of PA63, the proteolytically activated form of anthrax PA; or the N-terminal domain (EFn) of anthrax toxin edema factor, which domain binds to oligomeric forms of PA63, or a composition comprising the fusion protein.

[0431] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising an AB toxin fused to a linker peptide linked to a C-terminal receptorbinding domain of anthrax toxin protective antigen (PAd4 domain), wherein the fusion protein further comprises a translocation domain, a holotoxin, or a mutant form of the holotoxin that have been modified (e.g., chemically) or mutated to negate the toxin receptor-binding function of the AB toxin, or a composition comprising the fusion protein .

[0432] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a fusion protein comprising an N-terminal enzymatic domain (Chain A) together with a translocation/pore-forming domain from a Clostridial neurotoxin or a non-Clostridial botulinumlike toxin, linked to a C-terminal receptor-binding domain of anthrax toxin protective antigen (PAd4 domain), or a composition comprising the fusion protein.

[0433] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), wherein the mPA has been modified (e.g., chemically) or mutated so as to block its native receptor-binding function, and a molecule that can target nociceptor neuron surface molecules,

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PCT/US2016/049106 specifically in combination with anthrax toxin edema factor (EF) and/or anthrax lethal factor (LF), or a composition comprising the engineered fusion protein.

[0434] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising an anthrax protective antigen (PA) moiety fused with a molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel receptor, and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA, or a composition comprising the engineered fusion protein.

[0435] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising a mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or a nociceptor ion channel receptor, and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain. ANTXR2 is the native receptor for PA, or a composition comprising the engineered fusion protein.

[0436] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (PAd4) fused with an inhibitor cysteine knot (ICK) toxin, e.g., a Conotoxin (CTx), or a composition comprising the engineered fusion protein.

[0437] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with an inhibitor cysteine knot (ICK) toxin and a Protective-Antigen (PA) moiety, or a composition comprising the engineered fusion protein.

[0438] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with a L chain of a Clostridial neurotoxin and a Protective-Antigen (PA) moiety, or a composition comprising the engineered fusion protein. In one embodiment, this fusion protein can further

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PCT/US2016/049106 comprise the belt of the H chain of the Clostridial neurotoxin, the belt is the N-terminal segment of the H chain.

[0439] Non-limiting examples of pain that can be treated according to the methods described herein can include: chronic pain; chronic neuropathic pain; painful diabetic neuropathy (PDN), post-herpetic neuropathy (PHN); trigeminal neuralgia (TN); inflammatory pain; neuropathic pain; a channelopathy; primary erythermalgia (PE); paroxysmal extreme pain disorder (PEPD); spinal cord injury pain; multiple sclerosis pain; phantom limb pain; post-stroke pain; chronic back pain; osteoarthritis pain; cancer-associated pain; HIV-associated pain; chronic inflammatory pain; central neuropathy; peripheral neuropathy; anaesthesia dolorosa; hyperalgesia; hyperpathia; paresthesia; psychogenic pain; back pain; breakthrough pain; erythromelalgia; nerve compression and/or entrapment [e.g., carpal tunnel syndrome, tarsal tunnel syndrome, ulnar nerve entrapment, compression radiculopathy, radicular low back pain, spinal root lesions, spinal root compression, lumbar spinal stenosis, sciatic nerve compression, and/or intercostal neuralgia]; neuritis; pain from chemotherapy; chronic alcoholism (alcoholic polyneuropathy); rheumatoid arthritis pain; pain associated with bums; encephalitis pain; bone fracture pain; neuritis pain; autoimmune disease pain; postoperative pain; dental pain; pain associated with bacterial infection, e.g. a bacterial infection or viral infection; pain associated with radiotherapy; pain associated with gout and irritable bowel syndrome; pain from trauma (such as from lacerations, incisions, burns, foreign bodies or bullet and/or shrapnel injuries, spinal cord injury, brachial plexus avulsion, nerve crush and/or entrapment; nerve transection; visceral pain (such as renal or ureteral colic, irritable bowel syndrome, angina or cardiac pain, cardiac arrhythmia, period pain, interstitial cystitis, rectal pain, pain associated with diarrhoea, appendicitis, cholecystitis and pancreatitis); uremia pain; pain associated with hypothyroidism; pain associated with vitamin deficiency; headache pain (e.g., tension headache, migraine and cluster headache); idiopathic pain (e.g., trigeminal neuralgia, a complex regional pain syndrome [e.g. complex regional pain syndrome I and /or complex regional pain syndrome II], allodynia or fibromyalgia); respiratory pain (e.g., pain associated with asthma, airway hyper-reactivity in asthma, chronic cough, e.g. in asthma and/or chronic obstructive pulmonary disorder); fibromyalgia; hormonal therapy pain; hypothyroidism pain; epileptic pain; ataxia; periodic paralysis; acute itch and/or chronic itch pain.

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PCT/US2016/049106 [0440] In one embodiment, the pain to treat by using any of the compositions described herein is selected from diabetic neuropathic pain, cancer pain, fibromyalgia and other systemic pain disorders.

[0441] In one embodiment, the pain to treat by using any of the compositions described herein is selected from nerve, joint, skin, visceral, bladder, and muscle pain.

[0442] In one embodiment, the composition to be administered comprises a first polypeptide (or fusion protein) and a second polypeptide (or fusion protein), and the first polypeptide is bound to the second polypeptide before administration.

[0443] In another aspect, described herein is a method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a first composition comprising

a) an anthrax toxin protective antigen (PA) moiety; and/or

b) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor; and

c) a second composition comprising:

(i) an anthrax toxin translocation signal peptide fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx));

(ii) an anthrax toxin translocation peptide fused with an intracellularly-acting toxin catalytic domain; and/or (iii) an anthrax toxin edema factor (EF) and/or anthrax toxin lethal factor (LF).

[0444] In any of the aspects drawn to a method of treating pain, the administering can be performed by intrathecal infusion, intra-cerebroventricular infusion, an epidural injection into the central nervous system, or by peripheral administration using intradermal injection, subcutaneous injection, intramuscular injection, intraneural injection, or intra-articular injection. [0445] Accordingly, in one embodiment, described herein is a method for treatment of nerve, joint, skin, visceral, bladder, or muscle pain comprising administering peripherally by intradermal injection, subcutaneous injection, intramuscular injection, intraneural injection, or intra-articular injection to a subject in need thereof an effective, pain reducing amount of a composition as described herein.

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PCT/US2016/049106 [0446] In another embodiment, described herein is a method for treatment of diabetic neuropathic pain, cancer pain, fibromyalgia or other systemic pain disorders comprising administering by epidural injection, intrathecal infusion or intra-cerebroventricular infusion into the central nervous system of a subject in need thereof an effective, pain reducing amount of a composition as described herein.

[0447] In one embodiment of any of the methods of treating pain described herein, the effective, pain reducing amount of a composition as described herein is administered separately before, simultaneously, or after administering a composition comprising an anthrax protective antigen (PA) in a pharmaceutically acceptable carrier, excipient or diluent.

[0448] In one embodiment of a method of treating pain described herein, the method comprises administering to a subject in need thereof, native mature anthrax toxin protective antigen (PA) and anthrax toxin edema factor (EF), anthrax toxin lethal factor (LF) or any combination thereof. [0449] In one embodiment of an aspect described herein in which PA is part of the fusion protein or part of the composition that is administered for pain treatment, the PA or mPA is administered in an oligomeric form. In one embodiment, the oligomeric PA or mPA is formed from proteolytically activated PA or mPA (or mutant thereof) to achieve increased avidity for receptor-bearing cells. By way of non-limiting example, PA can be treated with trypsin to nick and then separate the two fragments (e.g. PA63 and PA20) on an ion exchange column. PA63 will elute as an oligomer (e.g. a heptamer) and will remain in the proteolytically activated prepore state if the pH is kept above about pH 8.0. Preparation of oligomeric and/or proteolytically activated PA is described in the art, e.g., in Milne et al, JBC 269: 20607-20612, 1994; which is incorporated by reference herein in its entirety.

[0450] In one embodiment of an aspect involving administering a first and second composition, the first composition comprises both i) an anthrax toxin protective antigen (PA) moiety and ii) a mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptor-binding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor. In another embodiment including administration of a first composition comprising i) anthrax toxin protective antigen (PA) moiety and ii) mutant anthrax toxin protective antigen (mPA) moiety that has been altered to block its native receptorbinding function, fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor, the two different first polypeptides are in oligomeric form such that the oligomeric complex comprises both polypeptides. In one embodiment, the first

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PCT/US2016/049106 composition is administered in a separate injection before, simultaneously or after administering the second composition.

[0451] The compositions and methods described herein can be administered to a subject having or diagnosed as having pain. Thus, the methods described herein encompass administering an effective amount of a composition described herein to a subject in order to alleviate pain. As used herein, alleviating pain is ameliorating any condition or symptom associated with the pain. As compared with an equivalent untreated control, such reduction is by at least 5%, 10%, 20%, 40%, 50%, 60%, 80%, 90%, 95%, 99% or more as measured by any standard technique.

A variety of means for administering the compositions described herein to subjects are known to those of skill in the art. Such methods can include, but are not limited to oral, parenteral, intravenous, intramuscular, subcutaneous, transdermal, airway (aerosol), pulmonary, cutaneous, topical, injection, or intratumoral administration. Administration can be local or systemic.

[0452] The term “effective amount as used herein refers to the amount of a composition needed to alleviate at least one or more symptom of the disease or disorder, and relates to a sufficient amount of pharmacological composition to provide the desired effect. The term therapeutically effective amount therefore refers to an amount of the composition that is sufficient to provide a particular anti-pain effect when administered to a typical subject. An effective amount as used herein, in various contexts, would also include an amount sufficient to delay the development of a symptom of the disease, alter the course of a symptom disease (for example but not limited to, slowing the progression of a symptom of the disease), or reverse a symptom of the disease.

Thus, it is not generally practicable to specify an exact “effective amount. However, for any given case, an appropriate “effective amount can be determined by one of ordinary skill in the art using only routine experimentation.

[0453] Effective amounts, toxicity, and therapeutic efficacy can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., for determining the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dosage can vary depending upon the dosage form employed and the route of administration utilized. The dose ratio between toxic and therapeutic effects is the therapeutic index and can be expressed as the ratio LD50/ED50. Compositions and methods that exhibit large therapeutic indices are preferred. A therapeutically effective dose can be estimated initially from cell culture assays. Also, a dose can be formulated in animal models to achieve a circulating plasma concentration range that includes the IC50 (i.e., the concentration

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PCT/US2016/049106 of the active ingredient which achieves a half-maximal inhibition of symptoms) as determined in cell culture, or in an appropriate animal model. Levels in plasma can be measured, for example, by high performance liquid chromatography. The effects of any particular dosage can be monitored by a suitable bioassay. The dosage can be determined by a physician and adjusted, as necessary, to suit observed effects of the treatment.

[0454] In some embodiments of all the aspects described herein, the technology described herein relates to a pharmaceutical composition as described herein, and optionally combined with a pharmaceutically acceptable carrier. Pharmaceutically acceptable carriers and diluents include saline, aqueous buffer solutions, solvents and/or dispersion media. The use of such carriers and diluents is well known in the art. Some non-limiting examples of materials which can serve as pharmaceutically-acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, methylcellulose, ethyl cellulose, microcrystalline cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) lubricating agents, such as magnesium stearate, sodium lauryl sulfate and talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol (PEG); (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) pH buffered solutions; (21) polyesters, polycarbonates and/or polyanhydrides; (22) bulking agents, such as polypeptides and amino acids (23) serum component, such as serum albumin, HDL and LDL; (22) C2-C12 alcohols, such as ethanol; and (23) other non-toxic compatible substances employed in pharmaceutical formulations. Wetting agents, coloring agents, release agents, coating agents, sweetening agents, flavoring agents, perfuming agents, preservative and antioxidants can also be present in the formulation. The terms such as excipient, carrier, pharmaceutically acceptable carrier or the like are used interchangeably herein. In some embodiments of all the aspects described herein, the carrier inhibits the degradation of the active agent, e.g. a composition as described herein.

[0455] In one embodiment of any aspect described herein involving a pharmaceutical composition, the pharmaceutical composition can be a parenteral dose form. Since administration of parenteral dosage forms typically bypasses the patient's natural defenses

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PCT/US2016/049106 against contaminants, parenteral dosage forms are preferably sterile or capable of being sterilized prior to administration to a patient. Examples of parenteral dosage forms include, but are not limited to, solutions ready for injection, dry products ready to be dissolved or suspended in a pharmaceutically acceptable vehicle for injection, suspensions ready for injection, and emulsions. In addition, controlled-release parenteral dosage forms can be prepared for administration of a patient, including, but not limited to, DUROS®-type dosage forms and dosedumping.

[0456] Suitable vehicles that can be used to provide parenteral dosage forms are well known to those skilled in the art. Examples include, without limitation: sterile water; water for injection USP; saline solution; glucose solution; aqueous vehicles such as but not limited to, sodium chloride injection, Ringer's injection, dextrose Injection, dextrose and sodium chloride injection, and lactated Ringer's injection; water-miscible vehicles such as, but not limited to, ethyl alcohol, polyethylene glycol, and propylene glycol; and non-aqueous vehicles such as, but not limited to, corn oil, cottonseed oil, peanut oil, sesame oil, ethyl oleate, isopropyl myristate, and benzyl benzoate. Compounds that alter or modify the solubility of a pharmaceutically acceptable salt of a composition as disclosed herein can also be incorporated into the parenteral dosage forms of the disclosure, including conventional and controlled-release parenteral dosage forms.

[0457] Conventional dosage forms generally provide rapid or immediate drug release from the formulation. Depending on the pharmacology and pharmacokinetics of the drug, use of conventional dosage forms can lead to wide fluctuations in the concentrations of the drug in a patient's blood and other tissues. These fluctuations can impact a number of parameters, such as dose frequency, onset of action, duration of efficacy, maintenance of therapeutic blood levels, toxicity, side effects, and the like. Advantageously, controlled-release formulations can be used to control a drug's onset of action, duration of action, plasma levels within the therapeutic window, and peak blood levels. In particular, controlled- or extended-release dosage forms or formulations can be used to ensure that the maximum effectiveness of a drug is achieved while minimizing potential adverse effects and safety concerns, which can occur both from underdosing a drug (i.e., going below the minimum therapeutic levels) as well as exceeding the toxicity level for the drug. In some embodiments of all the aspects described herein, the composition can be administered in a sustained release formulation.

[0458] Controlled-release pharmaceutical products have a common goal of improving drug therapy over that achieved by their non-controlled release counterparts. Ideally, the use of an

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PCT/US2016/049106 optimally designed controlled-release preparation in medical treatment is characterized by a minimum of drug substance being employed to cure or control the condition in a minimum amount of time. Advantages of controlled-release formulations include: 1) extended activity of the drug; 2) reduced dosage frequency; 3) increased patient compliance; 4) usage of less total drug; 5) reduction in local or systemic side effects; 6) minimization of drug accumulation; 7) reduction in blood level fluctuations; 8) improvement in efficacy of treatment; 9) reduction of potentiation or loss of drug activity; and 10) improvement in speed of control of diseases or conditions. Kim, Chemg-ju, Controlled Release Dosage Form Design, 2 (Technomic Publishing, Lancaster, Pa.: 2000).

[0459] Most controlled-release formulations are designed to initially release an amount of drug (active ingredient) that promptly produces the desired therapeutic effect, and gradually and continually release other amounts of drug to maintain this level of therapeutic or prophylactic effect over an extended period of time. In order to maintain this constant level of drug in the body, the drug must be released from the dosage form at a rate that will replace the amount of drug being metabolized and excreted from the body. Controlled-release of an active ingredient can be stimulated by various conditions including, but not limited to, pH, ionic strength, osmotic pressure, temperature, enzymes, water, and other physiological conditions or compounds.

[0460] A variety of known controlled- or extended-release dosage forms, formulations, and devices can be adapted for use with the salts and compositions of the disclosure. Examples include, but are not limited to, those described in U.S. Pat. Nos.: 3,845,770; 3,916,899; 3,536,809; 3,598,123; 4,008,719; 5674,533; 5,059,595; 5,591 ,767; 5,120,548; 5,073,543; 5,639,476; 5,354,556; 5,733,566; and 6,365,185 BI ; each of which is incorporated herein by reference. These dosage forms can be used to provide slow or controlled-release of one or more active ingredients using, for example, hydroxypropylmethyl cellulose, other polymer matrices, gels, permeable membranes, osmotic systems (such as OROS® (Alza Corporation, Mountain View, Calif. USA)), or a combination thereof to provide the desired release profile in varying proportions.

[0461] The methods described herein can further comprise administering a second agent and/or treatment to the subject, e.g. as part of a combinatorial therapy. Non-limiting examples of a second agent and/or treatment can include pain relievers, anti-inflammatories, and other medications that treat pain and/or a condition causing pain.

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PCT/US2016/049106 [0462] In one embodiment of any aspect described herein involving the administration of an effective dose of a composition, an effective dose of a composition as described herein can be administered to a patient once. In another embodiment, an effective dose of a composition can be administered to a patient repeatedly. For systemic administration, subjects can be administered a therapeutic amount of a composition as described herein, such as, e.g. 0.1 mg/kg, 0.5 mg/kg, 1.0 mg/kg, 2.0 mg/kg, 2.5 mg/kg, 5 mg/kg, 10 mg/kg, 15 mg/kg, 20 mg/kg, 25 mg/kg, 30 mg/kg, 40 mg/kg, 50 mg/kg, or more.

[0463] In one embodiments of any of the aspects described herein involving administration of a composition for the treatment of pain, after an initial treatment regimen, the treatments can be administered on a less frequent basis. For example, after treatment biweekly for three months, treatment can be repeated once per month, for six months or a year or longer. Treatment according to the methods described herein can reduce levels of a marker or symptom of a condition, e.g. pain by at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80 % or at least 90% or more.

[0464] The dosage of a composition as described herein can be determined by a physician and adjusted, as necessary, to suit observed effects of the treatment. With respect to duration and frequency of treatment, it is typical for skilled clinicians to monitor subjects in order to determine when the treatment is providing therapeutic benefit, and to determine whether to increase or decrease dosage, increase or decrease administration frequency, discontinue treatment, resume treatment, or make other alterations to the treatment regimen. The dosing schedule can vary from once a week to daily depending on a number of clinical factors, such as the subject's sensitivity to the composition. The desired dose or amount of activation can be administered at one time or divided into subdoses, e.g., 2-4 subdoses and administered over a period of time, e.g., at appropriate intervals through the day or other appropriate schedule. In some embodiments of all the aspects described herein, administration can be chronic, e.g., one or more doses and/or treatments daily over a period of weeks or months. Examples of dosing and/or treatment schedules are administration daily, twice daily, three times daily or four or more times daily over a period of 1 week, 2 weeks, 3 weeks, 4 weeks, 1 month, 2 months, 3 months, 4 months, 5 months, or 6 months, or more. A composition can be administered over a period of time, such as over a 5 minute, 10 minute, 15 minute, 20 minute, or 25 minute period. [0465] The dosage ranges for the administration of a composition as described herein, according to the methods described herein depend upon, for example, the form of the active ingredient, its

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PCT/US2016/049106 potency, and the extent to which symptoms, markers, or indicators of a condition described herein are desired to be reduced, for example the percentage reduction desired for pain. The dosage should not be so large as to cause adverse side effects. Generally, the dosage will vary with the age, condition, and sex of the patient and can be determined by one of skill in the art. The dosage can also be adjusted by the individual physician in the event of any complication. [0466] The efficacy of a composition in, e.g. the treatment of a condition described herein, or to induce a response as described herein (e.g. a reduction of pain) can be determined by the skilled clinician. However, a treatment is considered “effective treatment, as the term is used herein, if one or more of the signs or symptoms of a condition described herein are altered in a beneficial manner, other clinically accepted symptoms are improved, or even ameliorated, or a desired response is induced e.g., by at least 10% following treatment according to the methods described herein. Efficacy can be assessed, for example, by measuring a marker, indicator, symptom, and/or the incidence of a condition treated according to the methods described herein or any other measurable parameter appropriate. Efficacy can also be measured by a failure of an individual to worsen as assessed by hospitalization, or need for medical interventions (i.e., progression of the disease is halted). Methods of measuring these indicators are known to those of skill in the art and/or are described herein. Treatment includes any treatment of a disease in an individual or an animal (some non-limiting examples include a human or an animal) and includes: (1) inhibiting the disease, e.g., preventing a worsening of symptoms (e.g. pain or inflammation); or (2) relieving the severity of the disease, e.g., causing regression of symptoms. An effective amount for the treatment of a disease means that amount which, when administered to a subject in need thereof, is sufficient to result in effective treatment as that term is defined herein, for that disease. Efficacy of an agent can be determined by assessing physical indicators of a condition or desired response. It is well within the ability of one skilled in the art to monitor efficacy of administration and/or treatment by measuring any one of such parameters, or any combination of parameters. Efficacy can be assessed in animal models of a condition described herein, for example treatment of a mouse model of pain. When using an experimental animal model, efficacy of treatment is evidenced when a statistically significant change in a marker is observed, e.g. responses to or avoidance of stimuli in the affected area.

[0467] For convenience, the meaning of some terms and phrases used in the specification, examples, and appended claims, are provided below. Unless stated otherwise, or implicit from context, the following terms and phrases include the meanings provided below. The definitions

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PCT/US2016/049106 are provided to aid in describing particular embodiments, and are not intended to limit the claimed invention, because the scope of the invention is limited only by the claims. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. If there is an apparent discrepancy between the usage of a term in the art and its definition provided herein, the definition provided within the specification shall prevail.

Definitions [0468] For convenience, certain terms employed herein, in the specification, examples and appended claims are collected here.

[0469] As used herein, the term “capable of’ when used with a verb, encompasses or means the action of the corresponding verb. For example, “capable of blocking” also means blocks, “capable of cleaving” also means cleaves, “capable of binding” also means binds, “capable of translocating” also means translocates, and “capable of specifically targeting...also means specifically targets.

[0470] As used herein, a “nociceptor neuron-binding protein” or “nociceptor-binding protein” when used in reference with a fusion protein described herein refers to a polypeptide targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the interaction results in that binding site of the neuron undergoing endocytosis to be incorporated into an endosome within the nociceptor neuron. In one embodiment, the nociceptor neuronbinding protein is an antibody or antibody fragment thereof that binds a receptor or ion channel expressed on the cell surface of the nociceptor neuron, e.g., the nerve grow factor receptor or the ANTXR2 or Navi.7, Navi .8, and Navi .9 ion channel proteins. In one embodiment, the nociceptor neuron-binding protein is a ligand for a cell surface receptor of the nociceptor neuron, e.g., the nerve grow factor ligand for the nerve grow factor receptor. In one embodiment, the nociceptor neuron-binding protein is a PA or a variant form of PA or PA fragments thereof that is capable of binding to its receptor, ANTXR2. In one embodiment, the TM targets binds to the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

[0471] In one embodiment, a variant form of PA that is capable of binding to or binds its receptor is resistant to furin protease and furin-like proteases. In one embodiment, a variant form of PA is modified (e.g., chemically) or mutated at the furin cleavage site. In some embodiments, the PA^funn' is mutated at the furin cleavage site ¹⁶⁴RKKR¹⁶⁷ to amino acid residues SSSR (SEQ. ID NO: 32), SSSS (SEQ ID NO: 33) or RRSS (SEQ ID NO: 149), wherein RKKR are the

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PCT/US2016/049106 residues 164-167 of SEQ ID NO: 1 minus the 29 amino acid signal peptide in SEQ ID NO: 1. The amino acid numbering is with reference to a PA polypeptide without the 29 residue signal peptide at the N-terminus. In one embodiment, PA fragments thereof that is capable of binding to its receptor are PA63, the fragment produced by furin cleavage of the full-length PA protein, and PAd4, the C-terminal receptor binding part of the full-length native PA. In one embodiment, the PA fragments thereof that is capable of binding to its receptor is PAd4 plus at least 1-60 consecutive amino acid residues N-terminal to PAd4 domain in the native PA, meaning the estimated PAd4 sequence plus additional upstream sequence is the C-terminal receptor binding section of PA.

[0472] The terms “decrease”, “reduced”, “reduction”, or “inhibit” are all used herein to mean a decrease by a statistically significant amount. In some embodiments, “reduce,” “reduction or “decrease or “inhibit” typically means a decrease by at least 10% as compared to a reference level (e.g. the absence of a given treatment) and can include, for example, a decrease by at least about 10%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 98%, at least about 99% , or more.

As used herein, “reduction” or “inhibition” does not encompass a complete inhibition or reduction as compared to a reference level. “Complete inhibition” is a 100% inhibition as compared to a reference level. A decrease can be preferably down to a level accepted as within the range of normal for an individual without a given disorder.

[0473] The terms “increased”, “increase”, “enhance”, or “activate” are all used herein to mean an increase by a statically significant amount. In some embodiments of all the aspects described herein, the terms “increased”, “increase”, “enhance”, or “activate” can mean an increase of at least 10% as compared to a reference level, for example an increase of at least about 20%, or at least about 30%, or at least about 40%, or at least about 50%, or at least about 60%, or at least about 70%, or at least about 80%, or at least about 90% or up to and including a 100% increase or any increase between 10-100% as compared to a reference level, or at least about a 2-fold, or at least about a 3-fold, or at least about a 4-fold, or at least about a 5-fold or at least about a 10fold increase, or any increase between 2-fold and 10-fold or greater as compared to a reference level. In the context of a marker or symptom, an “increase” is a statistically significant increase in such level.

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PCT/US2016/049106 [0474] As used herein, a subject means a human or animal. Usually the animal is a vertebrate such as a primate, rodent, domestic animal or game animal. Primates include chimpanzees, cynomologous monkeys, spider monkeys, and macaques, e.g., Rhesus. Rodents include mice, rats, woodchucks, ferrets, rabbits and hamsters. Domestic and game animals include cows, horses, pigs, deer, bison, buffalo, feline species, e.g., domestic cat, canine species, e.g., dog, fox, wolf, avian species, e.g., chicken, emu, ostrich, and fish, e.g., trout, catfish and salmon. In some embodiments of all the aspects described herein, the subject is a mammal, e.g., a primate, e.g., a human. The terms, “individual,” “patient” and “subject” are used interchangeably herein.

[0475] Preferably, the subject is a mammal. The mammal can be a human, non-human primate, mouse, rat, dog, cat, horse, or cow, but is not limited to these examples. Mammals other than humans can be advantageously used as subjects that represent animal models of pain. A subject can be male or female.

[0476] A subject can be one who has been previously diagnosed with or identified as suffering from or having a condition in need of treatment (e.g. pain) or one or more complications related to such a condition, and optionally, have already undergone treatment for pain or the one or more complications related to pain. Alternatively, a subject can also be one who has not been previously diagnosed as having pain or one or more complications related to pain. For example, a subject can be one who exhibits one or more risk factors for pain or one or more complications related to pain or a subject who does not exhibit risk factors.

[0477] A “subject in need” of treatment for a particular condition can be a subject having that condition, diagnosed as having that condition, or at risk of developing that condition.

[0478] As used herein, “engineered refers to the aspect of having been manipulated by the hand of man. For example, an fusion polypeptide is considered to be “engineered when the sequence of the polypeptide and/or encoding nucleic acid sequence manipulated by the hand of man to differ from the sequence of a polypeptide as it exists in nature. As is common practice and is understood by those in the art, progeny and copies of an engineered polynucleotide and/or polypeptide are typically still referred to as “engineered even though the actual manipulation was performed on a prior entity.

[0479] As used herein, the terms “protein and “polypeptide are used interchangeably herein to designate a series of amino acid residues, connected to each other by peptide bonds between the alpha-amino and carboxy groups of adjacent residues. The terms protein, and polypeptide refer to a polymer of amino acids, including modified amino acids (e.g., phosphorylated,

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PCT/US2016/049106 glycated, glycosylated, etc.) and amino acid analogs, regardless of its size or function. Protein and “polypeptide” are often used in reference to relatively large polypeptides, whereas the term peptide is often used in reference to small polypeptides, but usage of these terms in the art overlaps. The terms protein and polypeptide are used interchangeably herein when referring to a gene product and fragments thereof. Thus, exemplary polypeptides or proteins include gene products, naturally occurring proteins, homologs, orthologs, paralogs, fragments and other equivalents, variants, fragments, and analogs of the foregoing.

[0480] In some embodiments of all the aspects described herein, a polypeptide, e.g., a fusion polypeptide or portion thereof (e.g. a domain), can be a variant of a sequence described herein.

In some embodiments of all the aspects described herein, the variant is a conservative substitution variant. A “variant,” as referred to herein, is a polypeptide substantially homologous to a native or reference polypeptide, but which has an amino acid sequence different from that of the native or reference polypeptide because of one or a plurality of deletions, insertions or substitutions. Polypeptide-encoding DNA sequences encompass sequences that comprise one or more additions, deletions, or substitutions of nucleotides when compared to a native or reference DNA sequence, but that encode a variant protein or fragment thereof that retains the relevant biological activity relative to the reference protein, e.g., at least 50% of the wildtype reference protein. As to amino acid sequences, one of skill will recognize that individual substitutions, deletions or additions to a nucleic acid, peptide, polypeptide, or protein sequence which alters a single amino acid or a small percentage, (i.e. 5% or fewer, e.g. 4% or fewer, or 3% or fewer, or 1% or fewer) of amino acids in the encoded sequence is a “conservatively modified variant” where the alteration results in the substitution of an amino acid with a chemically similar amino acid. It is contemplated that some changes can potentially improve the relevant activity, such that a variant, whether conservative or not, has more than 100% of the activity of wildtype, e.g. 110%, 125%, 150%, 175%, 200%, 500%, 1000% or more.

[0481] A given amino acid can be replaced by a residue having similar physiochemical characteristics, e.g., substituting one aliphatic residue for another (such as Ile, Val, Leu, or Ala for one another), or substitution of one polar residue for another (such as between Lys and Arg; Glu and Asp; or Gln and Asn). Other such conservative substitutions, e.g., substitutions of entire regions having similar hydrophobicity characteristics, are known. Polypeptides comprising conservative amino acid substitutions can be tested in any one of the assays described herein to confirm that a desired activity of a native or reference polypeptide is retained. Conservative

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PCT/US2016/049106 substitution tables providing functionally similar amino acids are well known in the art. Such conservatively modified variants are in addition to and do not exclude polymorphic variants, interspecies homologs, and alleles consistent with the disclosure. Typically conservative substitutions for one another include: 1) Alanine (A), Glycine (G); 2) Aspartic acid (D), Glutamic acid (E); 3) Asparagine (N), Glutamine (Q); 4) Arginine (R), Lysine (K); 5) Isoleucine (I), Leucine (L), Methionine (M), Valine (V); 6) Phenylalanine (F), Tyrosine (Y), Tryptophan (W); 7) Serine (S), Threonine (T); and 8) Cysteine (C), Methionine (M) (see, e.g., Creighton, Proteins (1984)).

[0482] Any cysteine residue not involved in maintaining the proper conformation of the polypeptide also can be substituted, generally with serine, to improve the oxidative stability of the molecule and prevent aberrant crosslinking. Conversely, cysteine bond(s) can be added to the polypeptide to improve its stability or facilitate oligomerization.

[0483] In one embodiment of any the aspects described herein involving administering a polypeptide, the polypeptide administered to a subject can comprise one or more amino acid substitutions or modifications. In one embodiment, the substitutions and/or modifications can prevent or reduce proteolytic degradation and/or prolong half-life of the polypeptide in the subject. In one embodiment, a polypeptide can be modified by conjugating or fusing it to other polypeptide or polypeptide domains such as, by way of non-limiting example, transferrin (WO06096515A2), albumin (Yeh et al., 1992), growth hormone (US2003104578AA); cellulose (Levy and Shoseyov, 2002); and/or Fc fragments (Ashkenazi and Chamow, 1997). The references in the foregoing paragraph are incorporated by reference herein in their entireties. [0484] In one embodiment of any of the aspects described herein involving a polypeptide, a polypeptide as described herein can comprise at least one peptide bond replacement. A single peptide bond or multiple peptide bonds, e.g. 2 bonds, 3 bonds, 4 bonds, 5 bonds, or 6 or more bonds, or all the peptide bonds can be replaced. An isolated peptide as described herein can comprise one type of peptide bond replacement or multiple types of peptide bond replacements, e.g. 2 types, 3 types, 4 types, 5 types, or more types of peptide bond replacements. Non-limiting examples of peptide bond replacements include urea, thiourea, carbamate, sulfonyl urea, trifluoroethylamine, ortho-(aminoalkyl)-phenylacetic acid, para-(aminoalkyl)-phenylacetic acid, meta-(aminoalkyl)-phenylacetic acid, thioamide, tetrazole, boronic ester, olefinic group, and derivatives thereof.

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PCT/US2016/049106 [0485] In one embodiment of any of the aspects described herein involving a polypeptide, a polypeptide as described herein can comprise naturally occurring amino acids commonly found in polypeptides and/or proteins produced by living organisms, e.g. Ala (A), Val (V), Leu (L), Ile (I), Pro (P), Phe (F), Trp (W), Met (M), Gly (G), Ser (S), Thr (T), Cys (C), Tyr (Y), Asn (N),

Gln (Q), Asp (D), Glu (E), Lys (K), Arg (R), and His (H). In one embodiment of any of the aspects described herein involving a polypeptide, a polypeptide as described herein can comprise alternative amino acids. Non-limiting examples of alternative amino acids include Damino acids, beta-amino acids, homocysteine, phosphoserine, phosphothreonine, phosphotyrosine, hydroxyproline, gamma-carboxyglutamate; hippuric acid, octahydroindole-2carboxylic acid, statine, l,2,3,4,-tetrahydroisoquinoline-3-carboxylic acid, penicillamine (3mercapto-D-valine), ornithine, citruline, alpha-methyl-alanine, para-benzoylphenylalanine, paraamino phenylalanine, p-fluorophenylalanine, phenylglycine, propargylglycine, sarcosine, and tert-butylglycine), diaminobutyric acid, 7-hydroxy-tetrahydroisoquinoline carboxylic acid, naphthylalanine, biphenylalanine, cyclohexylalanine, amino-isobutyric acid, norvaline, norleucine, tert-leucine, tetrahydroisoquinoline carboxylic acid, pipecolic acid, phenylglycine, homophenylalanine, cyclohexylglycine, dehydroleucine, 2,2-diethylglycine, 1-amino-lcyclopentanecarboxylic acid, 1-amino-l-cyclohexanecarboxylic acid, amino-benzoic acid, amino-naphthoic acid, gamma-aminobutyric acid, difluorophenylalanine, nipecotic acid, alphaamino butyric acid, thienyl-alanine, t-butylglycine, trifluorovaline; hexafluoroleucine; fluorinated analogs; azide-modified amino acids; alkyne-modified amino acids; cyano-modified amino acids; and derivatives thereof.

[0486] In one embodiment of any of the aspects described herein involving a polypeptide, a polypeptide can be modified, e.g. by addition of a moiety to one or more of the amino acids comprising the peptide. In one embodiment, a polypeptide as described herein can comprise one or more moiety molecules, e.g. 1 or more moiety molecules per peptide, 2 or more moiety molecules per peptide, 5 or more moiety molecules per peptide, 10 or more moiety molecules per peptide or more moiety molecules per peptide. In some embodiments of all the aspects described herein, a polypeptide as described herein can comprise one more types of modifications and/or moieties, e.g. 1 type of modification, 2 types of modifications, 3 types of modifications or more types of modifications. Non-limiting examples of modifications and/or moieties include PEGylation; glycosylation; HESylation; ELPylation; lipidation; acetylation; amidation; end-capping modifications; cyano groups; phosphorylation; albumin, and cyclization.

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In some embodiments of all the aspects described herein, an end-capping modification can comprise acetylation at the N-terminus, N-terminal acylation, and N-terminal formylation. In some embodiments of all the aspects described herein, an end-capping modification can comprise amidation at the C-terminus, introduction of C-terminal alcohol, aldehyde, ester, and thioester moieties. The half-life of a polypeptide can be increased by the addition of moieties, e.g. PEG or albumin.

[0487] In one embodiment of any of the aspects described herein involving administering a polypeptide (or administering a nucleic acid encoding a polypeptide), the polypeptide administered or encoded can be a functional fragment of one of the amino acid sequences described herein. As used herein, a “functional fragment” is a fragment or segment of a peptide which retains at least 50% of the wild-type reference polypeptide’s activity according to the assays described below herein. A functional fragment can comprise conservative or nonconservative substitutions of the sequences disclosed herein.

[0488] Alterations of the original amino acid sequence can be accomplished by any of a number of techniques known to one of skill in the art. Amino acid substitutions can be introduced, for example, at particular locations by synthesizing oligonucleotides containing a codon change in the nucleotide sequence encoding the amino acid to be changed, flanked by restriction sites permitting ligation to fragments of the original sequence. Following ligation, the resulting reconstructed sequence encodes an analog having the desired amino acid insertion, substitution, or deletion. Alternatively, oligonucleotide-directed site-specific mutagenesis procedures can be employed to provide an altered nucleotide sequence having particular codons altered according to the substitution, deletion, or insertion required. Techniques for making such alterations include those disclosed by Walder et al. (Gene 42:133, 1986); Bauer et al. (Gene 37:73, 1985); Craik (BioTechniques, January 1985, 12-19); Smith et al. (Genetic Engineering: Principles and Methods, Plenum Press, 1981); and U.S. Pat. Nos. 4,518,584 and 4,737,462, which are herein incorporated by reference in their entireties. In some embodiments of all the aspects described herein, a polypeptide as described herein can be chemically synthesized and mutations can be incorporated as part of the chemical synthesis process.

[0489] As used herein an “antibody” refers to IgG, IgM, IgA, IgD or IgE molecules or antigenspecific antibody fragments thereof (including, but not limited to, a Fab, F(ab')2, Fv, disulfide linked Fv, scFv, single domain antibody, closed conformation multispecific antibody, disulfidelinked scfv, diabody), whether derived from any species that naturally produces an antibody, or

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PCT/US2016/049106 created by recombinant DNA technology; whether isolated from serum, B-cells, hybridomas, transfectomas, yeast or bacteria.

[0490] As described herein, an antigen is a molecule that is bound by a binding site on an antibody agent. Typically, antigens are bound by antibody ligands and are capable of raising an antibody response in vivo. An antigen can be a polypeptide, protein, nucleic acid or other molecule or portion thereof. The term antigenic determinant refers to an epitope on the antigen recognized by an antigen-binding molecule, and more particularly, by the antigen-binding site of the molecule.

[0491] As used herein, the term “antibody reagent refers to a polypeptide that includes at least one immunoglobulin variable domain or immunoglobulin variable domain sequence and which specifically binds a given antigen. An antibody reagent can comprise an antibody or a polypeptide comprising an antigen-binding domain of an antibody. In some embodiments of all the aspects described herein, an antibody reagent can comprise a monoclonal antibody or a polypeptide comprising an antigen-binding domain of a monoclonal antibody. For example, an antibody can include a heavy (H) chain variable region (abbreviated herein as VH), and a light (L) chain variable region (abbreviated herein as VL). In another example, an antibody includes two heavy (H) chain variable regions and two light (L) chain variable regions. The term antibody reagent encompasses antigen-binding fragments of antibodies (e.g., single chain antibodies, Fab and sFab fragments, F(ab')2, Fd fragments, Fv fragments, scFv, and domain antibodies (dAb) fragments (see, e.g. de Wildt et al., Eur J. Immunol. 1996; 26(3):629-39; which is incorporated by reference herein in its entirety)) as well as complete antibodies. An antibody can have the structural features of IgA, IgG, IgE, IgD, IgM (as well as subtypes and combinations thereof). Antibodies can be from any source, including mouse, rabbit, pig, rat, and primate (human and non-human primate) and primatized antibodies. Antibodies also include midibodies, humanized antibodies, chimeric antibodies, and the like.

[0492] The VH and VL regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDR), interspersed with regions that are more conserved, termed framework regions (FR). The extent of the framework region and CDRs has been precisely defined (see, Rabat, E. A., et al. (1991) Sequences of Proteins of

Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242, and Chothia, C. et al. (1987) J. Mol. Biol. 196:901-917; which are incorporated by reference herein in their entireties). Each VH and VL is typically composed of

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PCT/US2016/049106 three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FR1, CDRl, FR2, CDR2, FR3, CDR3, FR4.

[0493] The terms antigen-binding fragment or “antigen-binding domain”, which are used interchangeably herein are used to refer to one or more fragments of a full length antibody that retain the ability to specifically bind to a target of interest. Examples of binding fragments encompassed within the term antigen-binding fragment of a full length antibody include (i) a Fab fragment, a monovalent fragment consisting of the VL, VH, CL and CHI domains; (ii) a F(ab')2 fragment, a bivalent fragment including two Fab fragments linked by a disulfide bridge at the hinge region; (iii) an Fd fragment consisting of the VH and CHI domains; (iv) an Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (v) a dAb fragment (Ward et al., (1989) Nature 341:544-546; which is incorporated by reference herein in its entirety), which consists of a VH or VL domain; and (vi) an isolated complementarity determining region (CDR) that retains specific antigen-binding functionality. As used herein, the term “specific binding” refers to a chemical interaction between two molecules, compounds, cells and/or particles wherein the first entity binds to the second, target entity with greater specificity and affinity than it binds to a third entity which is a non-target. In some embodiments of all the aspects described herein, specific binding can refer to an affinity of the first entity for the second target entity which is at least 10 times, at least 50 times, at least 100 times, at least 500 times, at least 1000 times or greater than the affinity for the third nontarget entity.

[0494] Additionally, and as described herein, an antibody can be further optimized to decrease potential immunogenicity, while maintaining functional activity, for therapy in humans. In this regard, functional activity means a polypeptide capable of displaying one or more known functional activities associated with a recombinant antibody or antibody reagent thereof as described herein. Such functional activities include, e.g. the ability to bind to the target molecule.

[0495] As used herein, the term “nucleic acid” or “nucleic acid sequence” refers to any molecule, preferably a polymeric molecule, incorporating units of ribonucleic acid, deoxyribonucleic acid or an analog thereof. The nucleic acid can be either single-stranded or double-stranded. A single-stranded nucleic acid can be one nucleic acid strand of a denatured double- stranded DNA. Alternatively, it can be a single-stranded nucleic acid not derived from any double-stranded DNA. In one aspect, the nucleic acid can be DNA. In another aspect, the

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PCT/US2016/049106 nucleic acid can be RNA. Suitable nucleic acid molecules are DNA, including genomic DNA or cDNA. Other suitable nucleic acid molecules are RNA, including mRNA.

[0496] As used herein, the terms treat,” treatment, treating,” or “amelioration” refer to therapeutic treatments, wherein the object is to reverse, alleviate, ameliorate, inhibit, slow down or stop the progression or severity of a condition associated with a disease or disorder, e.g. pain. The term “treating includes reducing or alleviating at least one adverse effect or symptom of a condition, disease or disorder associated with pain. Treatment is generally “effective if one or more symptoms or clinical markers are reduced. Alternatively, treatment is “effective if the progression of a disease is reduced or halted. That is, “treatment includes not just the improvement of symptoms or markers, but also a cessation of, or at least slowing of, progress or worsening of symptoms compared to what would be expected in the absence of treatment. Beneficial or desired clinical results include, but are not limited to, alleviation of one or more symptom(s), diminishment of extent of disease, stabilized (i.e., not worsening) state of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, remission (whether partial or total), and/or decreased mortality, whether detectable or undetectable. The term treatment of a disease also includes providing relief from the symptoms or side-effects of the disease (including palliative treatment).

[0497] As used herein, the term “pharmaceutical composition” refers to the active agent in combination with a pharmaceutically acceptable carrier e.g. a carrier commonly used in the pharmaceutical industry. The phrase pharmaceutically acceptable is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.

[0498] As used herein, the term administering, refers to the placement of a compound as disclosed herein into a subject by a method or route which results in at least partial delivery of the agent at a desired site. Pharmaceutical compositions comprising the compounds disclosed herein can be administered by any appropriate route which results in an effective treatment in the subject.

[0499] The term “statistically significant or “significantly refers to statistical significance and generally means a two standard deviation (2SD) or greater difference.

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PCT/US2016/049106 [0500] Other than in the operating examples, or where otherwise indicated, all numbers expressing quantities of ingredients or reaction conditions used herein should be understood as modified in all instances by the term “about.” The term “about” when used in connection with percentages can mean ±1%.

[0501] As used herein the term comprising or comprises is used in reference to compositions, methods, and respective component(s) thereof, that are essential to the method or composition, yet open to the inclusion of unspecified elements, whether essential or not.

[0502] The term consisting of' refers to compositions, methods, and respective components thereof as described herein, which are exclusive of any element not recited in that description of the embodiment.

[0503] As used herein the term consisting essentially of' refers to those elements required for a given embodiment. The term permits the presence of elements that do not materially affect the basic and novel or functional characteristic(s) of that embodiment.

[0504] The singular terms a, an, and the include plural referents unless context clearly indicates otherwise. Similarly, the word or is intended to include and unless the context clearly indicates otherwise. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of this disclosure, suitable methods and materials are described below. The abbreviation, e.g. is derived from the Latin exempli gratia, and is used herein to indicate a non-limiting example. Thus, the abbreviation e.g. is synonymous with the term for example.

[0505] As used herein, a protease activity included in a fusion protein embraces all noncytotoxic proteases that are capable of cleaving one or more proteins of the exocytic fusion apparatus in eukaryotic cells. The protease is preferably a bacterial protease (or fragment thereof). More preferably the bacterial protease is selected from the genera Clostridium or Neisseria/Streptococcus (e.g. a clostridial L-chain, or a neisserial IgA protease preferably from N. gonorrhoeae or S. pneumoniae). Another example of non-cytotoxic protease includes scorpion venom protease, such as those from the venom of the Brazilian scorpion Tityus serrulatus, or the protease antarease.

[0506] Protease activities also embrace the activities of variant non-cytotoxic proteases (i.e. variants of naturally-occurring protease molecules), so long as the variant proteases still demonstrate the requisite protease activity. By way of example, a variant may have at least 70%, preferably at least 80%, more preferably at least 90%, and most preferably at least 95% or at

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PCT/US2016/049106 least 98% amino acid sequence homology with a reference protease sequence. Thus, the term variant includes non-cytotoxic proteases having enhanced (or decreased) endopeptidase activity - particular mention here is made to the increased Kcat/Km of BTx/A mutants Q161 A, E54A, and K165L see Ahmed, S.A. (2008) Protein J. DOI 10.1007/sl0930-007-9118-8, which is incorporated by reference thereto. The term fragment, when used in relation to a protease, typically means a peptide having at least 150, preferably at least 200, more preferably at least 250, and most preferably at least 300 amino acid residues of the reference protease. As with the TM ‘fragment’ component (discussed above), protease ‘fragments’ of the present invention embrace fragments of variant proteases based on a reference sequence.

[0507] In one embodiment of any of the aspects described herein, the protease activity included in a fusion protein demonstrates a serine or metalloprotease activity (e.g. endopeptidase activity). In one embodiment, the protease is specific for a SNARE protein (e.g. SNAP-25, synaptobrevin/VAMP, or syntaxin).

[0508] Particular mention is made to the protease domains of neurotoxins, for example the protease domains of bacterial neurotoxins. Thus, the various aspects described herein embrace the use of neurotoxin domains which occur in nature, as well as recombinantly prepared versions of such naturally-occurring neurotoxins.

[0509] Exemplary neurotoxins are produced by Clostridia, and the term clostridial neurotoxin embraces neurotoxins produced by C. tetani (TTx), and by C. botulinum (BTx) serotypes A-G, as well as the closely related BTx-like neurotoxins produced by C. baratii and C. butyricum.

The above-mentioned abbreviations are used throughout the present specification. For example, the nomenclature BTx/A denotes the source of neurotoxin as BTx (serotype A). Corresponding nomenclature applies to other BTx serotypes.

[0510] BTxs are the most potent toxins known, with median lethal dose (LD50) values for mice ranging from 0.5 to 5 ng/kg depending on the serotype. BTxs are adsorbed in the gastrointestinal tract, and, after entering the general circulation, bind to the presynaptic membrane of cholinergic nerve terminals and prevent the release of their neurotransmitter acetylcholine. BTx/B, BTx/D, BTx/F and BTx/G cleave synaptobrevin/vesicle-associated membrane protein (VAMP); BTx/C, BTx/A and BTx/Ε cleave the synaptosomal-associated protein of 25 kDa (SNAP-25); and BTx/C cleaves syntaxin.

[0511] BTxs share a common structure, being di-chain proteins of-150 kDa, consisting of a heavy chain (H-chain) of-100 kDa covalently joined by a single disulfide bond to a light chain

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PCT/US2016/049106 (L-chain) of ~50 kDa. The H-chain consists of two domains, each of ~50 kDa. The C-terminal domain (He) is required for the high-affinity neuronal binding, whereas the N-terminal domain (H_n) is proposed to be involved in membrane translocation. The L-chain is a zinc-dependent metalloprotease responsible for the cleavage of the substrate SNARE protein.

[0512] The term L-chain fragment means a component of the L-chain of a neurotoxin, which fragment demonstrates a metalloprotease activity and is capable of proteolytically cleaving a vesicle and/or plasma membrane associated protein involved in cellular exocytosis.

[0513] Examples of suitable protease (reference) sequences include:

Botulinum type A neurotoxin - amino acid residues (1-448)

Botulinum type B neurotoxin - amino acid residues (1-440)

Botulinum type C neurotoxin - amino acid residues (1-441)

Botulinum type D neurotoxin - amino acid residues (1-445)

Botulinum type E neurotoxin - amino acid residues (1-422)

Botulinum type F neurotoxin - amino acid residues (1-439)

Botulinum type G neurotoxin - amino acid residues (1-441)

Tetanus neurotoxin- amino acid residues (1-457)

IgA protease - amino acid residues (1-959) Pohlner, I. et al. (1987). Nature 325, pp. 458-462, which is hereby incorporated by reference thereto.

[0514] In one embodiment of a fusion protein described herein having a non-cytotoxin protease, the non-cytotoxin protease can be an IgA protease or an Antarease decribed herein. In one embodiment of a fusion protein described herein having a non-cytotoxin protease, the noncytotoxin protease can have a unique cleavage recognition sequence described in the following pages.

[0515] A variety of clostridial toxin fragments comprising the light chain can be useful in aspects of the present invention with the proviso that these light chain fragments can specifically target the core components of the neurotransmitter release apparatus and thus participate in executing the overall cellular mechanism whereby a clostridial toxin proteolytically cleaves a substrate. The light chains of clostridial toxins are approximately 420-460 amino acids in length and comprise an enzymatic domain. Research has shown that the entire length of a clostridial toxin light chain is not necessary for the enzymatic activity of the enzymatic domain. As a nonlimiting example, the first eight amino acids of the BTx/A light chain are not required for enzymatic activity. As another non-limiting example, the first eight amino acids of the TTx light

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PCT/US2016/049106 chain are not required for enzymatic activity. Likewise, the carboxyl-terminus of the light chain is not necessary for activity. As a non-limiting example, the last 32 amino acids of the BTx/A light chain (residues 417-448) are not required for enzymatic activity. As another non-limiting example, the last 31 amino acids of the TTx light chain (residues 427-457) are not required for enzymatic activity. Thus, aspects of this embodiment can include clostridial toxin light chains comprising an enzymatic domain having a length of, for example, at least 350 amino acids, at least 375 amino acids, at least 400 amino acids, at least 425 amino acids and at least 450 amino acids. Other aspects of this embodiment can include clostridial toxin light chains comprising an enzymatic domain having a length of, for example, at most 350 amino acids, at most 375 amino acids, at most 400 amino acids, at most 425 amino acids and at most 450 amino acids.

[0516] Further examples of suitable non-cytotoxic proteases are described in detail in WO 2007/106115, which is hereby incorporated in its entirety by reference thereto.

[0517] In one embodiment, the non-cytotoxic protease cleaves a non-neuronal SNARE protein such as a SNAP-23 protein. In one embodiment, the non-cytotoxic protease is a modified botulinum toxin L-chain capable of cleaving SNAP-23. An example of such a modified L-chain is described by Chen and Barbieri, PNAS, vol. 106, no. 23, p9180-9184, 2009.

[0518] In one embodiment, the non-cytotoxic protease is a BTx/A, BTx/C or BTx/E protease, and the preferred SNARE motif is a SNAP (e.g. SNAP 25) motif.

[0519] In another embodiment, the non-cytotoxic protease is a BTx/B, BTx/D, BTx/F or BTx/G or tetanus neurotoxin (TTx) protease, and the preferred SNARE motif is a VAMP motif.

[0520] In another embodiment, the non-cytotoxic protease is a BTx/C 1 protease, and the preferred SNARE motif is a syntaxin motif.

[0521] The non-cytotoxic proteases of the engineered fusion proteins described herein recognise different cleavage site sequences and thus have slightly different cleavage specificities.

Non-cytotoxic

Protease

Cleavage site recognition sequence: P4-P3 -P2-P1 - J, -P Γ -P2’ -P3 ’

	P4	P3	P2	Pl	Pl’	P2’	P3’
BTx/A	E	A	N	Q	R	A	T (SEQ ID NO: 71)
BTx/B	G	A	S	Q	F	E	T (SEQ ID NO: 72)
BTx/C	A	N	Q	R	A	T	K (SEQ ID NO: 73)
BTx/C	D	T	K	K	A	V	K (SEQ ID NO: 74)
BTx/D	R	D	Q	K	L	s	E (SEQ ID NO: 75)

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BTx/E	Q	I	D	R	I	M	E (SEQ ID NO: 76)
BTx/F	E	R	D	Q	K	L	S (SEQ ID NO: 77)
BTx/G	E	T	S	A	A	K	I (SEQ ID NO: 78)
TTx	G	A	S	Q	F	E	T (SEQ ID NO: 79)
IgA protease	S	T	P	P	T	P	S (SEQ ID NO: 80)
Antarease	I	K	R	K	Y	W	W (SEQ ID NO: 81)

[0522] By way of further example, reference is made to the following recognition sequences and

cleavage sites:
Non-cytotoxic		Cleavage site recognition sequence:
Protease			P4-P3-P2-P1-I-P1’	-P2’-P3’
	P4	P3	P2	Pl	Pl’	P2’	P3’
BTx/A	E	A	N	Q	R	A	T (SEQ ID NO: 82)
	A	N	Q	R	A	T	K (SEQ ID NO: 83)
	E	A	N	Q	R	A	T (SEQ ID NO: 84)
	F	A	N	Q	R	A	T (SEQ ID NO: 85)
	E	A	N	Q	R	A	T (SEQ ID NO: 86)
	E	A	N	Q	R	A	I (SEQ ID NO: 87)
	E	A	N	K	A	T	K (SEQ ID NO: 88)
	E	A	N	K	H	A	T (SEQ ID NO: 89)
	E	A	N	K	H	A	N (SEQ ID NO: 90)
				Q	R
				K	H
BTx/C	D	E	A	N	Q	R	A (SEQ ID NO: 91)
	E	A	N	Q	R	A	T (SEQ ID NO: 92)
	A	N	Q	R	A	T	K (SEQ ID NO: 93)
	N	Q	R	A	T	K	M (SEQ ID NO: 94)
	A	N	Q	R	A	I	K (SEQ ID NO: 95)
	A	N	Q	R	A	H	Q (SEQ ID NO: 96)
	D	T	K	K	A	V	K (SEQ ID NO: 97)
	K	T	K	K	A	V	K (SEQ ID NO: 98)
	E	T	K	K	A	I	K (SEQ ID NO: 99)

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BTx/E

BTx/B

E	T	K	R	A	M	K (SEQ ID NO:	100)
D	T	K	K	A	V	R (SEQ ID NO:	101)
D	T	K	K	A	L	K (SEQ ID NO:	102)
D	T	K	K	A	M	K (SEQ ID NO:	103)
E	s	K	K	A	V	K (SEQ ID NO:	104)
E	T	K	K	A	M	K (SEQ ID NO:	105)
E	T	K	K	A	V	K (SEQ ID NO:	106)
			K	A
			R	A
Q	I	D	R	I	M	E (SEQ ID NO:	107)
Q	I	Q	K	I	T	E (SEQ ID NO:	108)
Q	I	D	R	I	V	E (SEQ ID NO:	109)
Q	F	D	R	I	M	D (SEQ ID NO:	110)
Q	F	D	R	I	M	E (SEQ ID NO:	Hl)
Q	L	D	R	I	H	D (SEQ ID NO:	112)
Q	I	D	R	I	M	D (SEQ ID NO:	113)
Q	V	D	R	I	Q	Q (SEQ ID NO:	114)
			R	I
			K	I
G	A	S	Q	F	E	T (SEQ ID NO:	115)
A	G	A	s	Q	F	E (SEQ ID NO:	116)
G	A	S	Q	F	E	S (SEQ ID NO:	117)
Q	A	S	Q	F	E	S (SEQ ID NO:	118)
G	A	s	Q	G	E	T (SEQ ID NO:	119)
G	A	s	Q	F	E	Q (SEQ ID NO:	120)
Q	A	s	Q	F	E	A (SEQ ID NO:	121)
G	A	s	Q	F	Q	Q (SEQ ID NO:	122)
G	A	s	Q	F	E	A (SEQ ID NO:	123)

Q F

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BTx/D	R R K	D D D	Q Q Q	K K K K	L I L L	S S A	E (SEQ ID NO: 124) E (SEQ ID NO: 125) E (SEQ ID NO: 126)
BTx/F	E	R	D	Q	K	L	S (SEQ ID NO: 127)
	V	L	E	R	D	Q	K (SEQ ID NO: 128)
	E	R	D	Q	K	I	S (SEQ ID NO: 129)
	E	R	D	Q	A	L	S (SEQ ID NO: 130)
	E	K	D	Q	K	L	A (SEQ ID NO: 131)
				Q	K
BTx/G	E	s	S	A	A	K	I (SEQ ID NO: 132)
	E	T	S	A	A	K	I (SEQ ID NO: 133)
	E	s	s	A	A	K	L (SEQ ID NO: 134)
	E	T	s	A	A	K	L (SEQ ID NO: 135)
				A	A
TTx	G	A	s	Q	F	E	T (SEQ ID NO: 136)
	G	A	s	Q	G	E	T (SEQ ID NO: 137)
	G	A	s	Q	F	E	Q (SEQ ID NO: 138)
	Q	A	s	Q	F	E	A (SEQ ID NO: 139)
	G	A	s	Q	F	E	S (SEQ ID NO: 140)
	Q	A	s	Q	F	E	S (SEQ ID NO: 141)
	G	A	s	Q	F	Q	Q (SEQ ID NO: 142)
	G	A	s	Q	F	E	A (SEQ ID NO: 143)
				Q	F
IgA protease	S	T	P	P	T	P	S (SEQ ID NO: 144)
Antarease	I	K	R	K	Y	W	W (SEQ ID NO: 145)

[0523] Targeting Moiety (TM) means any chemical structure that functionally interacts with a

Binding Site to cause a physical association between a fusion polypeptide as described herein

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PCT/US2016/049106 and the surface of a target cell. In the context of the present invention, the target cell is a nociceptor neuron. The term TM embraces any molecule (i.e. a naturally occurring molecule, or a chemically/physically modified variant thereof) that is capable of binding to a Binding Site on the target cell, which Binding Site is capable of internalization (e.g. endosome formation) - also referred to as receptor-mediated endocytosis. The TM may possess an endosomal membrane translocation function, in which case separate TM and Translocation Domain components need not be present in an agent of the present invention. Throughout the preceding description, specific TMs have been described. Reference to the TMs is merely exemplary, and the present invention embraces all variants and derivatives thereof, which retain the basic binding (i.e. targeting) ability of the exemplified TMs.

[0524] A TM according to the present invention includes antibodies (e.g. antibody fragments) and binding scaffolds; especially commercially available antibodies/ fragments and scaffolds designed for the purpose of binding (e.g. specifically) to target cells.

[0525] Protein scaffolds represent a new generation of universal binding frameworks to complement the expanding repertoire of therapeutic monoclonal antibodies and derivatives such as scFvs, Fab molecules, dAbs (single-domain antibodies), camelids, diabodies and minibodies, each of which may be employed as a TM of the present invention. Scaffold systems create or modify known protein recognition domains either through creation of novel scaffolds or modification of known protein binding domains. Such scaffolds include but are not limited to:

(i) protein A based scaffolds - affibodies (Nord, K. et al 1997 “Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain”. Nat Biotechnol 15, 772-777);

(ii) lipocalin based scaffolds - anticalins (Skerra 2008 “Alternative binding proteins: anticalins - harnessing the structural plasticity of the lipocalin ligand pocket to engineer novel binding activities”. FEBS J. 275:2677-83);

(iii) fibronectin based scaffolds - adnectin (Dineen et al 2008 “The Adnectin CT-322 is a novel VEGF receptor 2 inhibitor that decreases tumour burden in an orthotropic mouse model of pancreatic cancer”. BMC Cancer 8:352);

(iv) avimers (Silverman et al 2005 “Multivalent avimer proteins evolved by exon shuffling of a family of human receptor domains”. Nat Biotechnol 23:1556-61);

(v) ankyrin based scaffolds - darpins (Zahnd et al 2006 “Selection and characterization of Her2 binding-designed ankyrin repeat proteins”. J Biol Chem. 281:35167-75); and

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PCT/US2016/049106 (vi) centyrin scaffolds - based on a protein fold that has significant structural homology to Ig domains with loops that are analogous to CDRs. Ig domains are a common module in human proteins and have been widely applied as alternative scaffold proteins. Each of the above ‘scaffold’ publications is hereby incorporated (in its entirety) by reference thereto.

[0526] Binding scaffolds can be used to target particular cell types via interaction with specific cell surface proteins, receptors or other cell surface epitopes such as sugar groups. Such modified scaffolds can be engineered onto recombinant non-cytotoxic protease based polypeptides of the present invention.

[0527] The TM of the present invention binds (preferably specifically binds) to a nociceptor neuron target cell in question. The term “specifically binds” preferably means that a given TM binds to the target cell with a binding affinity (Ka) of 10⁶ M'¹ or greater, preferably 10⁷ M'¹ or greater, more preferably 10⁸ M'¹ or greater, and most preferably, 10⁹ M'¹ or greater. The term “specifically binds” can also mean that a given TM binds to a given receptor, e.g., ANTXR2 or NGFR, or Navi.7. 1.8 and 1.9 ion channels found on nociceptor, with a binding affinity (Ka) of 10⁶ M'¹ or greater, preferably 10⁷ M'¹ or greater, more preferably 10⁸ M'¹ or greater, and most preferably, 10⁹M-l or greater.

[0528] Reference to TM in the present specification embraces fragments and variants thereof, which retain the ability to bind to the target cell in question. By way of example, a variant may have at least 80%, preferably at least 90%, more preferably at least 95%, and most preferably at least 97 or at least 99% amino acid sequence homology with the reference TM (e.g. any SEQ ID NO presented in the present specification which defines a TM). Thus, a variant may include one or more analogues of an amino acid (e.g. an unnatural amino acid), or a substituted linkage.

Also, by way of example, the term fragment, when used in relation to a TM, means a peptide having at least ten, preferably at least twenty, more preferably at least thirty, and most preferably at least forty amino acid residues of the reference TM. The term fragment also relates to the above-mentioned variants. Thus, by way of example, a fragment of the present invention may comprise a peptide sequence having at least 10, 20, 30 or 40 amino acids, wherein the peptide sequence has at least 80% sequence homology over a corresponding peptide sequence (of contiguous) amino acids of the reference peptide.

[0529] It is routine to confirm that a TM binds to the selected target cell. For example, a simple radioactive displacement experiment may be employed in which tissue or cells representative of

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PCT/US2016/049106 a target cell in question are exposed to labelled (e.g. tritiated) TM in the presence of an excess of unlabelled TM. In such an experiment, the relative proportions of non-specific and specific binding may be assessed, thereby allowing confirmation that the TM binds to the target cell. Optionally, the assay may include one or more binding antagonists, and the assay may further comprise observing a loss of TM binding. Examples of this type of experiment can be found in Hulme, E.C. (1990), Receptor-binding studies, a brief outline, pp. 303-311, In Receptor biochemistry, APractical Approach, Ed. E.C. Hulme, Oxford University Press.

[0530] In the context of the present invention, reference to a peptide TM embraces peptide analogues thereof, so long as the analogue binds to the same receptor as the corresponding ‘reference’ TM.

[0531] The fusion proteins (also referred to herein as polypeptides) described herein may lack a functional HC (heavy chain) or H_c domain (C-terminal moiety of the HC) of a clostridial neurotoxin. In one embodiment, the polypeptides lack the last 50 C-terminal amino acids of a clostridial neurotoxin holotoxin. In another embodiment, the polypeptides lack the last 100,

150, 200, 250, or 300 C-terminal amino acid residues of a clostridial neurotoxin holotoxin. Alternatively, the HC binding activity may be negated/ reduced by mutagenesis - by way of example, referring to BTx/ A for convenience, modification of one or two amino acid residue mutations (W1266 to T and Y1267 to F) in the ganglioside binding pocket causes the HC region to lose its receptor binding function. Analogous mutations may be made to non-serotype A clostridial peptide components, e.g. a construct based on botulinum B with mutations (W1262 to F and Y1263 to F) or botulinum E (W1224 to F and Y1225 to F). Other mutations to the active site achieve the same ablation of HC receptor binding activity, e.g. Y1267S in botulinum type A toxin and the corresponding highly conserved residue in the other clostridial neurotoxins.

Details of this and other mutations are described in Rummel et al (2004) (Molecular Microbiol.

51:631-634), which is hereby incorporated by reference thereto.

[0532] The HC peptide of a native clostridial neurotoxin comprises approximately 400-440 amino acid residues, and consists of two functionally distinct domains of approximately 25kDa each, namely the N-terminal region (commonly referred to as the H_N peptide or domain) and the C-terminal region (commonly referred to as the H_c peptide or domain). Moreover, it has been well documented that the C-terminal region (He), which constitutes the C-terminal 160-200 amino acid residues, is responsible for binding of a clostridial neurotoxin to its natural cell receptors, namely to nerve terminals at the neuromuscular junction. Thus, reference throughout

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PCT/US2016/049106 this specification to a clostridial heavy-chain lacking a functional heavy chain HC peptide (or domain) such that the heavy-chain is incapable of binding to cell surface receptors to which a native clostridial neurotoxin binds means that the clostridial heavy-chain simply lacks a functional H_c peptide. In other words, the He peptide region is either partially or wholly deleted, or otherwise modified (e.g. through conventional chemical or proteolytic treatment) to inactivate its native binding ability for nerve terminals at the neuromuscular junction.

[0533] Thus, in one embodiment, a clostridial H_N peptide lacks part of a C-terminal peptide portion (H_c) of a clostridial neurotoxin and thus lacks the HC binding function of native clostridial neurotoxin. By way of example, in one embodiment, the C-terminally extended clostridial H_N peptide lacks the C-terminal 40 amino acid residues, or the C-terminal 60 amino acid residues, or the C-terminal 80 amino acid residues, or the C-terminal 100 amino acid residues, or the C-terminal 120 amino acid residues, or the C-terminal 140 amino acid residues, or the C-terminal 150 amino acid residues, or the C-terminal 160 amino acid residues of a clostridial neurotoxin heavy-chain. In another embodiment, the clostridial H_N peptide of the present invention lacks the entire C-terminal peptide portion (He) of a clostridial neurotoxin and thus lacks the HC binding function of native clostridial neurotoxin. By way of example, in one embodiment, the clostridial H_N peptide lacks the C-terminal 165 amino acid residues, or the Cterminal 170 amino acid residues, or the C-terminal 175 amino acid residues, or the C-terminal 180 amino acid residues, or the C-terminal 185 amino acid residues, or the C-terminal 190 amino acid residues, or the C-terminal 195 amino acid residues of a clostridial neurotoxin heavy-chain. By way of further example, the clostridial H_N peptide of the present invention lacks a clostridial He reference sequence selected from the group consisting of:

Botulinum type A neurotoxin - amino acid residues (Yl 111-L1296)

Botulinum type B neurotoxin - amino acid residues (Y1098-E1291)

Botulinum type C neurotoxin - amino acid residues (Yl 112-E1291)

Botulinum type D neurotoxin - amino acid residues (Y1099-E1276)

Botulinum type E neurotoxin - amino acid residues (Y1086-K1252)

Botulinum type F neurotoxin - amino acid residues (Yl 106-E1274)

Botulinum type G neurotoxin - amino acid residues (Yl 106-E1297)

Tetanus neurotoxin - amino acid residues (Y1128-D1315).

[0534] A Translocation Domain is a molecule or protein domain that enables translocation of a protease into a target cell such that a functional expression of protease activity occurs within the

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PCT/US2016/049106 cytosol of the target cell. Whether any molecule (e.g. a protein or peptide) possesses the requisite translocation function of the present invention may be confirmed by any one of a number of conventional assays.

[0535] For example, Shone C. (1987) describes an in vitro assay employing liposomes, which are challenged with a test molecule. Presence of the requisite translocation function is confirmed by release from the liposomes of K+ and/ or labelled NAD, which may be readily monitored [see Shone C. (1987) Eur. J. Biochem; vol. 167(1): pp. 175-180], [0536] A further example is provided by Blaustein R. (1987), which describes a simple in vitro assay employing planar phospholipid bilayer membranes. The membranes are challenged with a test molecule and the requisite translocation function is confirmed by an increase in conductance across the membranes [see Blaustein (1987) FEBS Letts; vol. 226, no. 1: pp. 115-120], [0537] Additional methodology to enable assessment of membrane fusion and thus identification of Translocation Domains suitable for use in the present invention are provided by Methods in Enzymology Vol 220 and 221, Membrane Fusion Techniques, Parts A and B, Academic Press 1993.

[0538] The present invention also embraces variant translocation domains, so long as the variant domains still demonstrate the requisite translocation activity. By way of example, a variant may have at least 70%, preferably at least 80%, more preferably at least 90%, and most preferably at least 95% or at least 98% amino acid sequence homology with a reference translocation domain. The term fragment, when used in relation to a translocation domain, means a peptide having at least 20, preferably at least 40, more preferably at least 80, and most preferably at least 100 amino acid residues of the reference translocation domain. In the case of a clostridial translocation domain, the fragment preferably has at least 100, preferably at least 150, more preferably at least 200, and most preferably at least 250 amino acid residues of the reference translocation domain (e.g. H_N domain). As with the TM ‘fragment’ component (discussed above), translocation ‘fragments’ of the present invention embrace fragments of variant translocation domains based on the reference sequences.

[0539] The Translocation Domain is preferably capable of formation of ion-permeable pores in lipid membranes under conditions of low pH. Preferably it has been found to use only those portions of the protein molecule capable of pore-formation within the endosomal membrane.

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PCT/US2016/049106 [0540] The Translocation Domain may be obtained from a microbial protein source, in particular from a bacterial or viral protein source. Hence, in one embodiment, the Translocation Domain is a translocating domain of an enzyme, such as a bacterial toxin or viral protein.

[0541] It is well documented that certain domains of bacterial toxin molecules are capable of forming such pores. It is also known that certain translocation domains of virally expressed membrane fusion proteins are capable of forming such pores. Such domains may be employed in the present invention.

[0542] The Translocation Domain may be of a clostridial origin, such as the H_N domain (or a functional component thereof). H_N means a portion or fragment of the H-chain of a clostridial neurotoxin approximately equivalent to the amino-terminal half of the H-chain, or the domain corresponding to that fragment in the intact H-chain. In this regard, should it be desired to remove the HC cell-binding function, this may be done by deletion of the HC or H_c amino acid sequence (either at the DNA synthesis level, or at the post-synthesis level by nuclease or protease treatment). Alternatively, the HC function may be inactivated by chemical or biological treatment.

[0543] Examples of suitable (reference) Translocation Domains include:

Botulinum type A neurotoxin - amino acid residues (449-871)

Botulinum type B neurotoxin - amino acid residues (441-858)

Botulinum type C neurotoxin - amino acid residues (442-866)

Botulinum type D neurotoxin - amino acid residues (446-862)

Botulinum type E neurotoxin - amino acid residues (423-845)

Botulinum type F neurotoxin - amino acid residues (440-864)

Botulinum type G neurotoxin - amino acid residues (442-863)

Tetanus neurotoxin- amino acid residues (458-879) [0544] The above-identified reference sequence should be considered a guide, as slight variations may occur according to sub-serotypes. By way of example, EiS 2007/0166332 (hereby incorporated by reference thereto) cites slightly different clostridial sequences:

Botulinum type A neurotoxin - amino acid residues (A449-K871)

Botulinum type B neurotoxin - amino acid residues (A442-S858)

Botulinum type C neurotoxin - amino acid residues (T450-N866)

Botulinum type D neurotoxin - amino acid residues (D446-N862)

Botulinum type E neurotoxin - amino acid residues (K423-K845)

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Botulinum type F neurotoxin - amino acid residues (A440-K864)

Botulinum type G neurotoxin - amino acid residues (S447-S863)

Tetanus neurotoxin- amino acid residues (S458-V879) [0545] Further examples of suitable translocation domains are described in detail in WO 2007/106115, which is hereby incorporated in its entirety by reference thereto.

[0546] In the context of the present invention, a variety of clostridial toxin H_N regions comprising a translocation domain can be useful in aspects of the present invention with the proviso that these active fragments can facilitate the release of a non-cytotoxic protease (e.g. a clostridial L-chain) from intracellular vesicles into the cytoplasm of the target cell and thus participate in executing the overall cellular mechanism whereby a clostridial toxin proteolytically cleaves a substrate. The H_N regions from the heavy chains of clostridial toxins are approximately 410-430 amino acids in length and comprise a translocation domain. Research has shown that the entire length of a H_N region from a clostridial toxin heavy chain is not necessary for the translocating activity of the translocation domain. Thus, embodiments can include clostridial toxin H_N regions comprising a translocation domain having a length of, for example, at least 350 amino acids, at least 375 amino acids, at least 400 amino acids and at least 425 amino acids. Other embodiments can include clostridial toxin H_N regions comprising translocation domain having a length of, for example, at most 350 amino acids, at most 375 amino acids, at most 400 amino acids and at most 425 amino acids.

[0547] For further details on the genetic basis of toxin production in Clostridium botulinum and C. tetani, we refer to Henderson et al (1997) in The Clostridia: Molecular Biology and Pathogenesis, Academic press.

[0548] The term H_N embraces naturally-occurring neurotoxin H_N portions, and modified H_N portions having amino acid sequences that do not occur in nature and/ or synthetic amino acid residues, so long as the modified H_N portions still demonstrate the above-mentioned translocation function.

[0549] Alternatively, the Translocation Domain may be of a non-clostridial origin. Examples of non-clostridial translocation domain origins include, but not be restricted to, the translocation domain of diphtheria toxin [O=Keefe et al., Proc. Natl. Acad. Sci. USA (1992) 89, 6202-6206; Silverman et al., J. Biol. Chem. (1993) 269, 22524-22532; and London, E. (1992) Biochem. Biophys. Acta., 1112, pp.25-51], the translocation domain of Pseudomonas exotoxin type A [Prior et al. Biochemistry (1992) 31, 3555-3559], the translocation domains of anthrax toxin

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PCT/US2016/049106 [Blanke et al. Proc. Natl. Acad. Sci. USA (1996) 93, 8437-8442], a variety of fusogenic or hydrophobic peptides of translocating function [Plank et al. J. Biol. Chem. (1994) 269, 1291812924; and Wagner et al (1992) PNAS, 89, pp.7934-7938], and amphiphilic peptides [Murata et al (1992) Biochem., 31, pp. 1986-1992], The Translocation Domain may mirror the Translocation Domain present in a naturally-occurring protein, or may include amino acid variations so long as the variations do not destroy the translocating ability of the Translocation Domain.

[0550] Particular examples of viral translocation domains suitable for use in the compositions and methods described herein include certain translocating domains of virally expressed membrane fusion proteins. For example, Wagner et al. (1992) and Murata et al. (1992) describe the translocation (i.e. membrane fusion and vesiculation) function of a number of fusogenic and amphiphilic peptides derived from the N-terminal region of influenza virus haemagglutinin. Other virally expressed membrane fusion proteins known to have the desired translocating activity are a translocating domain of a fusogenic peptide of Semliki Forest Virus (SFV), a translocating domain of vesicular stomatitis virus (VSV) glycoprotein G, a translocating domain of SER virus F protein and a translocating domain of Foamy virus envelope glycoprotein. Virally encoded Aspike proteins have particular application in the context of the present invention, for example, the El protein of SFV and the G protein of the G protein of VSV.

[0551] Use of the translocation domains listed in Table 2 (below) includes use of sequence variants thereof. A variant may comprise one or more conservative nucleic acid substitutions and/ or nucleic acid deletions or insertions, with the proviso that the variant possesses the requisite translocating function. A variant may also comprise one or more amino acid substitutions and/ or amino acid deletions or insertions, so long as the variant possesses the requisite translocating function.

Table 2

Translocation Domain source	Amino residues	acid	References
Diphtheria toxin	194-380		Silverman etal., 1994, J. Biol. Chem. 269, 22524-22532 London E., 1992, Biochem. Biophys. Acta., 1113, 25-51

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Translocation Domain source	Amino acid residues	References
Domain II of pseudomonas exotoxin	405-613	Prior et al., 1992, Biochemistry 31, 3555-3559 Kihara & Pastan, 1994, Bioconj Chem. 5, 532-538
Influenza virus haemagglutinin	GLFGAIAGFIENGW EGMIDGWYG, and Variants thereof	Plank et ai, 1994, J. Biol. Chem. 269, 12918-12924 Wagner et ai, 1992, PNAS, 89, 7934-7938 Murata et ai, 1992, Biochemistry 31, 1986-1992
Semliki Forest virus fusogenic protein	Translocation domain	Kielian etal., 1996, J Cell Biol. 134(4), 863-872
Vesicular Stomatitis virus glycoprotein G	118-139	Yao et al., 2003, Virology 310(2), 319-332
SER virus F protein	Translocation domain	Seth et ai, 2003, J Virol 77(11)6520-6527
Foamy virus envelope glycoprotein	Translocation domain	Picard-Maureau etal., 2003, J Virol. 77(8), 4722-4730

[0552] The polypeptides of the compositions and methods described herein may further comprise a translocation facilitating domain. This domain facilitates delivery of the noncytotoxic protease into the cytosol of the target cell and are described, for example, in WO 08/008803 and WO 08/008805, each of which is herein incorporated by reference thereto.

[0553] By way of example, suitable translocation facilitating domains include an enveloped virus fusogenic peptide domain, for example, suitable fusogenic peptide domains include influenza virus fusogenic peptide domain (e.g. influenza A virus fusogenic peptide domain of 23 amino acids), alphavirus fusogenic peptide domain (e.g. Semliki Forest virus fusogenic peptide

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PCT/US2016/049106 domain of 26 amino acids), vesiculovirus fusogenic peptide domain (e.g. vesicular stomatitis virus fusogenic peptide domain of 21 amino acids), respirovirus fusogenic peptide domain (e.g. Sendai virus fusogenic peptide domain of 25 amino acids), morbiliivirus fusogenic peptide domain (e.g. Canine distemper virus fusogenic peptide domain of 25 amino acids), avulavirus fusogenic peptide domain (e.g. Newcastle disease virus fusogenic peptide domain of 25 amino acids), henipavirus fusogenic peptide domain (e.g. Hendra virus fusogenic peptide domain of 25 amino acids), metapneumovirus fusogenic peptide domain (e.g. Human metapneumovirus fusogenic peptide domain of 25 amino acids) or spumavirus fusogenic peptide domain such as simian foamy virus fusogenic peptide domain; or fragments or variants thereof.

[0554] By way of further example, a translocation facilitating domain may comprise a Clostridial toxin H_N domain or a fragment or variant thereof. In more detail, a Clostridial toxin H_n translocation facilitating domain may have a length of at least 200 amino acids, at least 225 amino acids, at least 250 amino acids, at least 275 amino acids. In this regard, a Clostridial toxin H_n translocation facilitating domain preferably has a length of at most 200 amino acids, at most 225 amino acids, at most 250 amino acids, or at most 275 amino acids. Specific examples include:

Botulinum type A neurotoxin - amino acid residues (872-1110)

Botulinum type B neurotoxin - amino acid residues (859-1097)

Botulinum type C neurotoxin - amino acid residues (867-1111)

Botulinum type D neurotoxin - amino acid residues (863-1098)

Botulinum type E neurotoxin - amino acid residues (846-1085)

Botulinum type F neurotoxin - amino acid residues (865-1105)

Botulinum type G neurotoxin - amino acid residues (864-1105)

Tetanus neurotoxin - amino acid residues (880-1127) [0555] The above sequence positions may vary somewhat according to serotype/ sub-type, and further examples of suitable (reference) Clostridial toxin H_N domains include:

Botulinum type A neurotoxin - amino acid residues (874-1110)

Botulinum type B neurotoxin - amino acid residues (861-1097)

Botulinum type C neurotoxin - amino acid residues (869-1111)

Botulinum type D neurotoxin - amino acid residues (865-1098)

Botulinum type E neurotoxin - amino acid residues (848-1085)

Botulinum type F neurotoxin - amino acid residues (867-1105)

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Botulinum type G neurotoxin - amino acid residues (866-1105)

Tetanus neurotoxin- amino acid residues (882-1127) [0556] Any of the above-described facilitating domains may be combined with any of the previously described translocation domain peptides that are suitable for use in the present invention. Thus, by way of example, a non-clostridial facilitating domain may be combined with non-clostridial translocation domain peptide or with clostridial translocation domain peptide. Alternatively, a Clostridial toxin H_N translocation facilitating domain may be combined with a non-clostridial translocation domain peptide. Alternatively, a Clostridial toxin H_N facilitating domain may be combined or with a clostridial translocation domain peptide, examples of which include:

Botulinum type A neurotoxin - amino acid residues (449-1110)

Botulinum type B neurotoxin - amino acid residues (442-1097)

Botulinum type C neurotoxin - amino acid residues (450-1111)

Botulinum type D neurotoxin - amino acid residues (446-1098)

Botulinum type E neurotoxin - amino acid residues (423-1085)

Botulinum type F neurotoxin - amino acid residues (440-1105)

Botulinum type G neurotoxin - amino acid residues (447-1105)

Tetanus neurotoxin - amino acid residues (458-1127) [0557] The above-identified reference sequences should be considered a guide, as slight variations may occur according to sub-serotypes.

[0558] Sequence homology [0559] Any of a variety of sequence alignment methods can be used to determine percent identity, including, without limitation, global methods, local methods and hybrid methods, such as, e.g., segment approach methods. Protocols to determine percent identity are routine procedures within the scope of one skilled in the art. Global methods align sequences from the beginning to the end of the molecule and determine the best alignment by adding up scores of individual residue pairs and by imposing gap penalties. Non-limiting methods include, e.g., CTUSTAT W, see, e.g., Julie D. Thompson et al., CTUSTAT W: Improving the Sensitivity of Progressive Multiple Sequence Alignment Through Sequence Weighting, Position- Specific Gap Penalties and Weight Matrix Choice, 22(22) Nucleic Acids Research 4673-4680 (1994); and iterative refinement, see, e.g., Osamu Gotoh, Significant Improvement in Accuracy of Multiple Protein. Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural

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Alignments, 264(4) J. Mol. Biol. 823-838 (1996). Local methods align sequences by identifying one or more conserved motifs shared by all of the input sequences. Non-limiting methods include, e.g., Match-box, see, e.g., Eric Depiereux and Ernest Feytmans, Match-Box: A Fundamentally New Algorithm for the Simultaneous Alignment of Several Protein Sequences, 8(5) CABIOS 501 -509 (1992); Gibbs sampling, see, e.g., C. E. Lawrence et al., Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment, 262(5131 ) Science 208-214 (1993); Align-M, see, e.g., Ivo Van Walle et al., Align-M - A New Algorithm for Multiple Alignment of Highly Divergent Sequences, 20(9) Bioinformatics: 1428-1435 (2004).

[0560] Thus, percent sequence identity is determined by conventional methods. See, for example, Altschul et al., Bull. Math. Bio. 48: 603-16, 1986 and Henikoff and Henikoff, Proc. Natl. Acad. Sci. USA 89:10915-19, 1992. Briefly, two amino acid sequences are aligned to optimize the alignment scores using a gap opening penalty of 10, a gap extension penalty of 1, and the blosum 62 scoring matrix of Henikoff and Henikoff (ibid.) as shown below (amino acids are indicated by the standard one-letter codes).

[0561] Alignment scores for determining sequence identity [0562] ARNDCQEGHILKMFPSTWYV [0563] A 4 [0564] R-l 5 [0565] N-2 0 6 [0566] D-2-2 1 6 [0567] C 0-3-3-3 9 [0568] Q-l 1 0 0-3 5 [0569] E-l 0 0 2-4 2 5 [0570] G 0 -2 0 -1 -3 -2 -2 6 [0571] H -2 0 1 -1 -3 0 0 -2 8 [0572] I-l -3 -3 -3 -1 -3 -3 -4-3 4 [0573] L -1 -2 -3 -4 -1 -2 -3 -4-3 2 4 [0574] K -1 2 0 -1 -3 1 1-2-1 -3 -2 5 [0575] M-1-1-2-3-1 0-2-3-2 1 2-1 5 [0576] F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 [0577] P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7

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PCT/US2016/049106 [0578] S 1 -1 1 0-1 0 0 0-1 -2 -2 0 -1 -2-1 4 [0579] T 0 -1 0-1-1 -1 -1 -2 -2 -1 -1 -1 -1 -2-115 [0580] W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1-4-3-211 [0581] Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 [0582] V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0-3 -1 4 [0583] [0584] The percent identity is then calculated as:

[0585] [0586] Total number of identical matches [0587] _x 100 [0588] [length of the longer sequence plus the [0589] number of gaps introduced into the longer [0590] sequence in order to align the two sequences] [0591] Substantially homologous polypeptides are characterized as having one or more amino acid substitutions, deletions or additions. These changes are preferably of a minor nature, that is conservative amino acid substitutions (see below) and other substitutions that do not significantly affect the folding or activity of the polypeptide; small deletions, typically of one to about 30 amino acids; and small amino- or carboxyl-terminal extensions, such as an aminoterminal methionine residue, a small linker peptide of up to about 20-25 residues, or an affinity tag.

[0592] Conservative amino acid substitutions

[0593]	Basic:	arginine
[0594]		lysine
[0595]		histidine
[0596]	Acidic:	glutamic acid
[0597]		aspartic acid
[0598]	Polar:	glutamine
[0599]		asparagine
[0600]	Hydrophobic:	leucine
[0601]		isoleucine
[0602]		valine
[0603]	Aromatic:	phenylalanine

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PCT/US2016/049106 [0604] [0605] tryptophan [0606] Small:

[0607] [0608] [0609] [0610] tyrosine glycine alanine serine threonine methionine [0611] In addition to the 20 standard amino acids, non-standard amino acids (such as 4hydroxyproline, 6-N-methyl lysine, 2-aminoisobutyric acid, isovaline and a -methyl serine) may be substituted for amino acid residues of the polypeptides of the present invention. A limited number of non-conservative amino acids, amino acids that are not encoded by the genetic code, and unnatural amino acids may be substituted for clostridial polypeptide amino acid residues.

The polypeptides of the present invention can also comprise non-naturally occurring amino acid residues.

[0612] Non-naturally occurring amino acids include, without limitation, trans-3-methylproline, 2,4-methano-proline, cis-4-hydroxyproline, trans-4-hydroxy-proline, N-methylglycine, allothreonine, methyl-threonine, hydroxy-ethylcysteine, hydroxyethylhomo-cysteine, nitroglutamine, homoglutamine, pipecolic acid, tert-leucine, norvaline, 2-azaphenylalanine, 3azaphenyl-alanine, 4-azaphenyl-alanine, and 4-fluorophenylalanine. Several methods are known in the art for incorporating non-naturally occurring amino acid residues into proteins. For example, an in vitro system can be employed wherein nonsense mutations are suppressed using chemically aminoacylated suppressor tRNAs. Methods for synthesizing amino acids and aminoacylating tRNA are known in the art. Transcription and translation of plasmids containing nonsense mutations is carried out in a cell free system comprising an E. coli S30 extract and commercially available enzymes and other reagents. Proteins are purified by chromatography. See, for example, Robertson et al., J. Am. Chem. Soc. 113:2722, 1991; Ellman et al., Methods Enzymol. 202:301, 1991; Chung et al., Science 259:806-9, 1993; and Chung et al., Proc. Natl. Acad. Sci. USA 90:10145-9, 1993). In a second method, translation is carried out in Xenopus oocytes by microinjection of mutated mRNA and chemically aminoacylated suppressor tRNAs (Turcatti et al., J. Biol. Chem. 271:19991-8, 1996). Within a third method, E. coli cells are cultured in the absence of a natural amino acid that is to be replaced (e.g., phenylalanine) and in the presence of the desired non-naturally occurring amino acid(s) (e.g., 2-azaphenylalanine, 3129

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PCT/US2016/049106 azaphenylalanine, 4-azaphenylalanine, or 4-fluorophenylalanine). The non-naturally occurring amino acid is incorporated into the polypeptide in place of its natural counterpart. See, Koide et al., Biochem. 33:7470-6, 1994. Naturally occurring amino acid residues can be converted to non-naturally occurring species by in vitro chemical modification. Chemical modification can be combined with site-directed mutagenesis to further expand the range of substitutions (Wynn and Richards, Protein Sci. 2:395-403, 1993).

[0613] A limited number of non-conservative amino acids, amino acids that are not encoded by the genetic code, non-naturally occurring amino acids, and unnatural amino acids may be substituted for amino acid residues of polypeptides of the present invention.

[0614] Essential amino acids in the polypeptides of the present invention can be identified according to procedures known in the art, such as site-directed mutagenesis or alanine-scanning mutagenesis (Cunningham and Wells, Science 244: 1081-5, 1989). Sites of biological interaction can also be determined by physical analysis of structure, as determined by such techniques as nuclear magnetic resonance, crystallography, electron diffraction or photoaffinity labeling, in conjunction with mutation of putative contact site amino acids. See, for example, de Vos et al., Science 255:306-12, 1992; Smith et al., J. Mol. Biol. 224:899-904, 1992; Wlodaver et al., FEBS Lett. 309:59-64, 1992. The identities of essential amino acids can also be inferred from analysis of homologies with related components (e.g. the translocation or protease components) of the polypeptides of the present invention.

[0615] Multiple amino acid substitutions can be made and tested using known methods of mutagenesis and screening, such as those disclosed by Reidhaar-Olson and Sauer (Science 241:53-7, 1988) or Bowie and Sauer (Proc. Natl. Acad. Sci. USA 86:2152-6, 1989). Briefly, these authors disclose methods for simultaneously randomizing two or more positions in a polypeptide, selecting for functional polypeptide, and then sequencing the mutagenised polypeptides to determine the spectrum of allowable substitutions at each position. Other methods that can be used include phage display (e.g., Lowman et al., Biochem. 30:10832-7, 1991; Ladner et al., U.S. Patent No. 5,223,409; Huse, WIPO Publication WO 92/06204) and region-directed mutagenesis (Derbyshire et al., Gene 46:145, 1986; Ner et al., DNA 7:127,

1988).

[0616] Multiple amino acid substitutions can be made and tested using known methods of mutagenesis and screening, such as those disclosed by Reidhaar-Olson and Sauer (Science 241:53-7, 1988) or Bowie and Sauer (Proc. Natl. Acad. Sci. USA 86:2152-6, 1989). Briefly,

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PCT/US2016/049106 these authors disclose methods for simultaneously randomizing two or more positions in a polypeptide, selecting for functional polypeptide, and then sequencing the mutagenized polypeptides to determine the spectrum of allowable substitutions at each position. Other methods that can be used include phage display (e.g., Lowman et al., Biochem. 30:10832-7, 1991; Ladner et al., U.S. Patent No. 5,223,409; Huse, WIPO Publication WO 92/06204) and region-directed mutagenesis (Derbyshire et al., Gene 46:145, 1986; Ner et al., DNA 7:127, 1988).

[0617] Specific elements of any of the foregoing embodiments can be combined or substituted for elements in other embodiments. Furthermore, while advantages associated with certain embodiments of the disclosure have been described in the context of these embodiments, other embodiments may also exhibit such advantages, and not all embodiments need necessarily exhibit such advantages to fall within the scope of the disclosure.

[0618] Some embodiments of the technology described herein can be defined according to any of the following numbered paragraphs:

1. A fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) a targeting moiety (TM) that is capable of binding to a Binding Site on said nociceptor neuron, which Binding Site is capable of undergoing endocytosis to be incorporated into an endosome within said nociceptor neuron, and wherein said nociceptor neuron expresses said SNARE protein; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of said nociceptor neuron; with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain.

2. The fusion protein of paragraph 1, the fusion protein further comprising a protease cleavage site at which site the fusion protein is cleavable by a protease, wherein the protease cleavage site is located C-terminal of the non-cytotoxic protease in the fusion protein.

3. The fusion protein of paragraph 1 or 2, wherein the non-cytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a non-Clostridial botulinum-like toxin.

4. The fusion protein of paragraph 1, 2, and 3, wherein the TL comprises a clostridial neurotoxin translocation domain or a non-Clostridial botulinum-like toxin translocation domain.

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5. The fusion protein of paragraph 3 or 4, wherein the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx).

6. The fusion protein of any of the preceding paragraphs, wherein the TM binds to the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

7. The fusion protein of any of the preceding paragraphs, wherein the TM is an anthrax toxin protective antigen (PA) or a C-terminal receptor-binding domain of PA or a PA fragment thereof that retains binding activity to ANTXR2.

8. The fusion protein according to paragraph 7, wherein the PA is resistant to furin cleavage.

9. The fusion protein according to paragraph 7 or 8, wherein the C-terminal receptorbinding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2d4, and PAd4.

10. The fusion protein any of the preceding paragraphs, wherein the PAd4 is resistant to cleavage by a protease.

11. The fusion protein according to paragraph 10, wherein the protease is Lys C or furin.

12. A fusion protein comprising: (a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; (b) and a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or PA fragment binds a receptor expressed on the nociceptor neuron.

13. The fusion protein of paragraph 12, wherein the non-cytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a non-Clostridial botulinum-like toxin.

14. The fusion protein of paragraph 13, wherein the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx).

15. The fusion protein of paragraph 12 or 13, wherein the clostridial neurotoxin L-chain is selected from Table 1.

16. The fusion protein of any of the preceding paragraphs, wherein the receptor that PA binds to is expressed on the nociceptor neuron is ANTXR2 (CMG2).

17. The fusion protein of any of the preceding paragraphs, wherein the protein capable of binding to PA is: an anthrax toxin lethal factor (LF); or an anthrax toxin edema factor (EF).

18. The fusion protein of paragraph 17, wherein PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

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19. The fusion protein of paragraph 17, wherein PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

20. A fusion protein comprising: (a) a disulfide-containing peptide toxin (these include the channel blocking toxins having a cysteine-knot motif), which is capable of blocking ion channels in a nociceptor neuron; and (b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses said ion channels therein (e.g., sodium or calcium or both sodium and calcium);

2E The fusion protein of paragraph 20, wherein the disulfide-containing peptide toxin comprises a cysteine knot motif.

22. The fusion protein of paragraph 20 or 21, wherein the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

23. The fusion protein according to any of the preceding paragraphs, wherein the TM is selected from the group consisting of: an anthrax toxin protective antigen (PA); a Cterminal receptor-binding domain of PA; and a nociceptor neuron-binding protein.

24. The fusion protein according to paragraph 23, wherein the PA or C-terminal receptorbinding domain of PA interacts with and binds the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

25. The fusion protein according to paragraph 23 or 24, wherein the PA is resistant to furin cleavage.

26. The fusion protein according to paragraph 23 or 24, wherein the C-terminal receptorbinding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2d4, and PAd4.

27. The fusion protein according to paragraph 26, wherein the PAd4 is is resistant to cleavage by a protease.

28. The fusion protein according to paragraph 27, wherein the protease is Lys C or furin.

29. The fusion protein of paragraph 23, wherein the nociceptor neuron-binding protein is an antibody.

30. The fusion protein of paragraph 29, wherein the antibody specifically binds to nerve growth factor receptor, the ANTXR2 receptor, or an ion-channel protein present on nociceptor neurons.

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31. The fusion protein of paragraph 30, wherein the ion-channel protein is selected from Navi.7, Navi.8 or Navi.9.

32. A fusion protein comprising: (a) a disulfide-containing peptide toxin (this are channel blocking toxin having a cysteine-knot motif), which is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and (b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the fragment binds a receptor expressed on the nociceptor neuron.

33. The fusion protein of paragraph 32, wherein the disulfide-containing peptide toxin comprises a cysteine knot motif.

34. The fusion protein of paragraph 32 or 33, wherein the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

35. The fusion protein of paragraph 32, 33 or 34, wherein the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

36. The fusion protein of any of the preceding paragraphs, wherein the protein capable of binding to PA is an anthrax toxin lethal factor (LF); or an anthrax toxin edema factor (EF).

37. The fusion protein of paragraph 36, wherein PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

38. The fusion protein of paragraph 36, wherein PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

39. A fusion protein comprising: (a) an AB toxin; (b) an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or fragment binds a receptor expressed on the nociceptor neuron; and (c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron.

40. The fusion protein of paragraph 39, wherein the AB toxin is selected from Ricin toxin, Cholera toxin A-part and B-part; Pseudomonas aeruginosa Exotoxin A A-part and Bpart; Shiga toxin A-part and B-part; and Diphtheria toxin A-part and B-part.

41. The fusion protein of paragraph 39 or 40, wherein the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

42. The fusion protein of any of the preceding paragraphs wherein the PA fragment is a Cterminal receptor-binding domain of PA.

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43. The fusion protein of any of the preceding paragraphs, wherein the TT is a clostridial neurotoxin translocation domain; a holotoxin; or a mutant form of the holotoxin that have been mutated to negate the toxin receptor-binding function of the AB toxin.

44. A nucleic acid encoding a fusion protein according to any of the previous paragraphs.

45. A vector comprising the nucleic acid of paragraph 44.

46. The vector of paragraph 45, wherein the vector is a plasmid, a bacteriophage, a phagmid, a cosmid, a viral vector, or a viral particle.

47. A cell comprising the nucleic acid of paragraph 44 or the vector of paragraph 45 or 46.

48. A method of producing the fusion protein of any of the preceding paragraphs comprising: (a) culturing the cell of paragraph 44 in conditions such that the fusion protein is expressed; and (b) recovering the fusion protein.

49. The fusion protein produced by the method of paragraph 48.

50. A composition comprising the fusion protein of any one of paragraphs 1-43.

51. A method for treatment of pain, the method comprising administering to a subject in need thereof the composition of any of the preceding paragraphs.

52. A method of treating pain comprising administering to a subject in need thereof, native mature anthrax toxin protective antigen (PA) and anthrax toxin edema factor (EF), anthrax toxin lethal factor (FF) or any combination thereof.

[0619] Some embodiments of the technology described herein can be defined according to any of the following numbered paragraphs:

1. An engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (Pad4) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

2. An engineered fusion protein comprising an anthrax toxin lethal factor domain (TFn) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)) and a Protective-Antigen (PA) moiety.

3. An engineered fusion protein comprising an anthrax protective antigen (PA) moiety or a mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor and an anthrax lethal factor domain (TFn) fused to an intracellularly acting toxin catalytic domain.

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4. An engineered fusion protein comprising an anthrax protective antigen (PA) moiety or an anthrax protective antigen (mPA) moiety fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain.

5. The engineered fusion protein of paragraph 3, wherein the molecule is selected from an antibody that specifically binds to the nerve growth factor receptor, or an antibody that specifically binds to Navi.7, Navi.8 or Navi.9.

6. The engineered fusion protein of paragraph 3, 4 or 5, wherein the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, lethal toxin (lethal factor), and/or Edema toxin (edema factor).

7. An engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), and a molecule that can target nociceptor neuron surface molecules specifically in combination with anthrax toxin edema factor (EF) and/or lethal factor (LF), wherein the mPA has its native receptor-binding function is blocked.

8. The engineered fusion protein of any of the preceding paragraphs, wherein PA or mPA is in an oligomeric form.

9. The engineered fusion protein of paragraph 8, wherein the oligomeric form is bound to the molecule.

10. A composition comprising an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (Pad4) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

11. A composition comprising an engineered fusion protein comprising an anthrax toxin lethal factor domain (LFn) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)) and a Protective-Antigen (PA) moiety.

12. A composition comprising engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), fused, with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain, wherein the mPA has its native receptor-binding function blocked.

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13. The composition of paragraph 12, wherein the molecule is selected from a nerve growth factor, and an antibody that specifically binds to Navi.7, Navi.8 or Navi.9.

14. The composition of paragraph 12 or 13, wherein the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, lethal toxin (lethal factor), and/or Edema toxin (edema factor).

15. A composition comprising an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA) and a molecule that can target nociceptor neuron surface molecules specifically in combination with anthrax toxin edema factor (EF), wherein the mPA has its native receptor-binding function blocked.

16. The composition of any one of the paragraphs 10-15, wherein PA or mPA is in an oligomeric form.

17. The composition of paragraph 16, wherein the oligomeric form is bound to the molecule.

18. The composition of any one of the paragraphs 10-17 further comprising a pharmaceutically acceptable carrier or excipient.

19. A method for treatment of pain, the method comprising administering to a subject in need thereof an effective,pain reducing amount of a composition comprising an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (PAd4) fused to an intracellularly acting toxin catalytic domain, wherein the engineered fusion protein is delivered to nociceptor neurons and results in decreased intracellular signaling events in the nociceptor neurons or decreased neurotransmitter release from the nociceptor neurons.

20. The method of paragraph 19, wherein the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, lethal toxin (lethal factor), and/or Edema toxin (edema factor).

21. A method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of a composition comprising an engineered fusion protein comprising an anthrax toxin Protective-Antigen (PA) moiety or its receptor binding domain (PAd4) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)).

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22. A method for treatment of pain, the method comprising administering to a subject in need thereof an effective amount of a composition comprising an engineered fusion protein comprising an anthrax toxin lethal factor (LFn) fused with an inhibitor cysteine knot (ICK) toxin (e.g., a Conotoxin (CTx)) and a Protective-Antigen (PA) moiety.

23. The composition of paragraphs 19-23, further comprising a pharmaceutically acceptable carrier or excipient.

24. A method for treatment of pain, the method comprising administering to a subject in need thereof an effective, pain reducing amount of an engineered fusion protein comprising an anthrax protective antigen (PA) moiety or a mutant anthrax protective antigen (mPA) moiety that has been altered to block its native receptor-binding function fused with a molecule capable of specifically targeting a nociceptor surface receptor or an ion channel receptor and an anthrax lethal factor domain (LFn) fused to an intracellularly acting toxin catalytic domain.

25. The method of paragraph 24, wherein the molecule is selected from an antibody that specifically binds to the nerve rrowth factor receptor and an antibody that specifically binds to Navi.7, Navi.8 or Navi.9.

26. The method of paragraph 24 or 25, wherein the intracellularly acting toxin catalytic domain is selected from diphtheria toxin (DTx), Pseudomonas aeruginosa exotoxin A (PTx), botulinium toxin (BTx) tetanus toxin (TTx), shiga toxin, ricin toxin, lethal toxin (lethal factor), and/or Edema toxin (edema factor).

27. A method of treating pain in a subject in need thereof comprising administering to the subject an engineered fusion protein comprising a native protective antigen (PA) or a mutant PA (mPA), and a molecule that can target nociceptor surface molecules specifically in combination with anthrax toxin edema factor (EF) and/or lethal factor (LF), wherein the mPA has its native receptor-binding function blocked.

28. The method of any one of paragraphs 19-27, wherein the PA or mPA is administered in an oligomeric form, wherein the oligomeric PA or mPA is formed from proteolytically activated PA or mPA (or mutant thereof) to achieve increased avidity for receptorbearing cells.

29. The method of paragraph 28, wherein the oligomeric form is bound to the molecule before administering.

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30. The method of paragraph 28 or 29, wherein the oligomeric form is administered in a separate injection before, simultaneously or after administering the “effector molecule.” [0620] The technology described herein is further illustrated by the following examples which in no way should be construed as being further limiting.

EXAMPLES [0621] Example 1 [0622] We have discovered that the major anthrax toxin receptor, ANTXR2, is highly and specifically expressed by nociceptor neurons compared to other neuronal subtypes and CNS tissues. By using the endosomal delivery mechanisms inherent to anthrax toxin, we can specifically deliver molecular cargo into nociceptors that would result in pain-specific block without causing other neurological side effects.

[0623] Based on this discovery, we provide :(1) pain-specific blockade and targeted analgesic mechanisms in chronic pain conditions. These conditions include osteoarthritis, spasticity, rheumatoid arthritis, chemotherapy induced neuropathy, and cancer pain. (2) Treatment of muscle spasticity. Pain is a major component of spastic disease conditions. Dysregulation of sensory-motor reflex circuits triggered by nociceptors could drive muscle spasticity. We hypothesize that anthrax toxin mediated nociceptor silencing may not only treat pain but also decrease muscle spasticity. (3) Treatment of osteoarthritic conditions. Joint pain and destruction is a major component of osteoarticular diseases and rheumatological diseases. Outside the nervous system (where it is specific to nociceptors), we find that ANTXR2 is highly expressed by macrophages, osteoblasts, and osteoclasts, which are key hematopoietic cells mediating joint. The anthrax toxin and their delivery mechanisms can used to specifically target joint pain through nociceptors without neurological side effects, as well as concurrently targeting the macrophages, osteoblasts and osteoclasts that mediate joint destruction.

[0624] To determine if anthrax toxin can be used to specifically target selected molecular cargo proteins into nociceptor neurons through its built in endosomal escape and cytosolic delivery mechanisms. We will further test if anthrax toxin can be used to silence chronic pain in several disease conditions (osteoarthritis, muscle injury, rheumatoid arthritis, chemotherapy induced neuropathy, cancer pain), and as well as joint destruction in osteoarthritis.

[0625] We recently discovered that ANTXR2 is highly expressed in nociceptor neurons, and is specific to these neurons compared to other neuronal subtypes, based on our detailed FACS purified somatosensory neuron expression databases, in situ hybridization databases, and tissue

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PCT/US2016/049106 expression databases. ANTXR2 is also highly expressed in macrophages, osteoblasts, and osteoclasts, key cell-types in joint destruction. This expression potentially allows anthrax toxin to deliver cargo into these cells to slow joint destruction in osteoarthritis.

[0626] We are utilizing anthrax toxin or its delivery mechanisms to specifically block chronic pain or joint destruction in different disease conditions. In some applications we will use native anthrax toxin, consisting of protective antigen (PA), the receptor binding component, together with Lethal Factor (LF, which silences MAP kinases) or Edema Factor (EF, a calcium dependent adenylate cyclase). In other applications, we will use anthrax toxin as a platform to mediate cytoplasmic delivery of the enzymatic moieties of other bacterial toxins, including diphtheria toxin (DTA) or ricin (Ren).

[0627] Native anthrax toxin (PA, LF, EF) to silence pain. Anthrax skin infections cause lesions that are painless. PA binding to ANTXR2 mediates the delivery of Lethal Factor (LF), which is known to block MAP kinases or edema factor (EF), which is an adenylate cyclase. Both MAP kinase and cAMP pathways mediate nociceptor sensitization and chronic pain, and their modulation could silence pain. Thus, we will utilize local subcutaneous or joint injections of combinations of PA+LF, PA+EF, or PA+LF+EF to induce pain blockade in different disease conditions.

[0628] Anthrax toxin mediated cytosolic delivery of enzymatic moieties of diphtheria toxin (DTA) or Ricin (Ren) to silence pain and arthritic joint destruction: PA, the receptor binding and pore-forming subunit of anthrax toxin, will be used to specifically deliver the PA-binding domain of lethal factor (LFn) fused to the enzymatic domain of diphtheria toxin (DTA) or Ricin (Ren) into ANTXR2+ cells in the joints, including nociceptor neurons, macrophages and osteoclasts. These toxins will be injected into osteoarthritic or rheumatoid arthritic joints to silence pain and joint destruction.

[0629] In mouse models, we will deliver locally subcutaneously or into the joints the above anthrax toxin molecules or molecular combinations to test the efficacy of pain blockade or joint preservation in animal models of: osteoarthritis (e.g., via monoiodoacetate injection), muscle injury (e.g., cardiotoxin induced damage), rheumatoid arthritis (e.g., K/BxN Serum transfer arthritis), chemotherapy induced neuropathy (e.g., Paclitaxel), and cancer pain (e.g., Ehrlich cell model) [0630] Pain behavioral testing will assay the effects on mechanical and/or thermal hyperalgesia.

We will also perform electrophysiology on primary nociceptor neurons to detect delivery of

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PCT/US2016/049106 intracellular toxins into neurons and neuronal activity block. Joint pathology will be analyzed by measures of inflammation and histological analysis.

[0631] Of note, we can also utilize this Anthrax Toxin platform to deliver the enzymatic moiety of Botulinum Toxin (BTx).

[0632] Figures 1A and IB depict the specific and high level expression of the receptor for the major anthrax toxin receptor within the dorsal root ganglia compared to 11 other nervous tissue types.

[0633] Figure 2 compares whole transcriptome data between purified mouse pain-sensing nociceptor neurons (Navl.8-Cre/TdTomato+) vs. another somatosensory neuron subtype, proprioceptors (Parv-Cre/TdTomato+). Though they are related cell-types, pain-sensing Navi.8+ nociceptor neurons show highly enriched expression of Antxr2 compared to proprioceptors. Antxr2 is >5-fold enriched in nociceptors vs. proprioceptor neurons (Pvalue<10'⁵).

[0634] Taken together, these data from Figures 1 and 2 show that Antxr2, the receptor for anthrax toxin is highly enriched in nociceptor neurons compared to other CNS tissues and to proprioceptor neurons. This strongly indicates that Antxr2 can be utilized to target pain-sensing neurons specifically versus other neuronal subtypes.

[0635] Example 2 -- Assessment of in vitro efficacy (1) [0636] We experimented to determine whether anthrax toxin components can be delivered to nociceptors in culture. This would be testing for the inhibition of protein synthesis in a mammalian cell in presense of the combination PA and the engineered fusion protein FFn-DTA, testing for the increase in intracellular cAMP levels in a mammalian cell in presense of the combination of PA and EF, and testing for the inhibition of MAPK signaling in a mammalian cell in presense of the combination PA and FF.

[0637] The A chain of diphtheria toxin (DTA) is used as the intracellular enzymatic toxin for proof of principle that the anthrax delivery system can be use to deliver toxins into neurons. DTA catalyzes the ADP-ribosylation of EF-2 and inhibits protein synthesis. The fusion protein, FFn-DTA, is frequently used to assay for PA-mediated translocation into the cytoplasm. Shown previously in Milne et al. Mol. Microbiol. Feb;15(4):661-6, (1995) and in Fiao et al. Chem. Bio. Chem., 15(16): 2458-2466, (2014), CHO-K1 cells treated with 20 nM PA together with the fusion protein, FFn-DTA or DTA-FFn, completely stopped protein synthesis at the femtomolar or picomolar concentration of a fusion proteins.

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PCT/US2016/049106 [0638] For our experiment, DRG neurons were harvested from wild-type B6 mice and cultured overnight at a cell density of-2000 neurons/well. Cells were treated with varying concentrations of PA and LFn-DTA for 6 hrs at 37°C in the presence of 3H-leu (400 nM). Protein synthesis was measured using radiolabeled leucine (3H-leu), newly synthesized protein would incorporate 3Hleu into the new protein. After the incubation period, the neurons were wash with F12K medium (leu-free), then incubated with 3H-leu in F12K medium (leu-free), followed by washing with PBS, and then finally lysed in scintillation fluid for the measurement of the incorporated 3H-leu radioactivity in newly synthesized protein. Control experiments were performed with PA but with no LFn-DTA added. Background 3H-leu radioactivity was subtracted from the experimental radioactivity, and the substracted data was normalized to that of untreated neurons. No significant inhibition of protein synthesis was observed when the neurons were treated with PA alone (Figures 3 and 4). Therefore, PA alone does not affect protein synthesis in neurons. However, PA and LFn-DTA potently inhibits protein synthesis at nanomolar concentrations in cultured neurons. (Figures 5 and 6).

[0639] Example 3 -- Assessment of in vitro efficacy (2) [0640] We will experiment to further assessment of in vitro efficacy of the disclosed engineered fusion proteins in known eDRG neuronal cell model.

[0641] Assays for the inhibition of substance P release and cleavage of SNAP-25 have been previously reported (Duggan et al., 2002, J. Biol. Chem., 277, 34846-34852). Briefly, dorsal root ganglia neurons are harvested from 15-day-old fetal Sprague-Dawley rats or wild-type B6 mice. The neurons will be dissociated, and the dissociated neurons will be plated onto 24-well plates coated with MATRIGEL™ at a density of 1 x 10⁶ cells/well. One day post-plating the cells are treated with 10 μΜ cytosine β-D-arabinofuranoside for 48 h. Cells are maintained in Dulbecco’s minimal essential medium supplemented with 5% heat-inactivated fetal bovine serum, 5 mM L-glutamine, 0.6% D-glucose, 2% B27 supplement, and 100 ng/ml 2.5S mouse or rat nerve growth factor (NGF). Cultures are maintained for 2 weeks at 37°C in 95% air/5% CO2 before addition of test materials.

[0642] Release of substance P from eDRG is assessed by enzyme-linked immunosorbent assay. Briefly, eDRG cells are washed twice with low potassium-balanced salt solution (BSS: 5 mM KC1, 137 mM NaCl, 1.2 mM MgCl₂, 5 mM glucose, 0.44 mM KH₂PO₄, 20 mM HEPES, pH 7.4, 2 mM CaCl₂). Basal samples are obtained by incubating each well for 5 min. with 1 ml of low potassium BSS. After removal of this buffer, the cells are stimulated to release by incubation

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PCT/US2016/049106 with 1 ml of high potassium buffer (BSS as above with modification to include 100 mM KC1 isotonically balanced with NaCl) for 5 min. All samples are removed to tubes on ice prior to assay of substance P. Total cell lysates are prepared by addition of 250 μΐ of 2 M acetic acid/0.1% trifluoroacetic acid to lyse the cells, centrifugal evaporation, and resuspension in 500 μΐ of assay buffer. Diluted samples are assessed for substance P content. Substance P immunoreactivity is measured using Substance P Enzyme Immunoassay Kits (Cayman Chemical Company or R&D Systems) according to manufacturers’ instructions. Substance P is expressed in pg/ml relative to a standard substance P curve run in parallel.

[0643] SDS-PAGE and Western blot analysis are performed using standard protocols (Novex). SNAP-25 proteins are resolved on a 12% Tris/glycine polyacrylamide gel (Novex) and subsequently transferred to nitrocellulose membrane. The membranes are probed with a monoclonal antibody (SMI-81) that recognises cleaved and intact SNAP-25. Specific binding is visualised using peroxidase-conjugated secondary antibodies and a chemiluminescent detection system. Cleavage of SNAP-25 is quantified by scanning densitometry (Molecular Dynamics Personal SI, ImageQuant data analysis software). Percent SNAP-25 cleavage is calculated according to the formula: (Cleaved SNAP-25/(Cleaved+Intact SNAP-25))xl00.

[0644] Example 4 --Assessment of in vivo efficacy [0645] The ability of proteins to inhibit acute capsaicin-induced mechanical allodynia is evaluated following subcutaneous intraplantar injection in the rat hind paw. Test animals are evaluated for paw withdrawal frequency (PWF%) in response to a 10 g Von Frey filament stimulus series (10 stimuli x 3 trials) prior to recruitment into the study, after subcutaneous treatment with test protein but before capsaicin, and following capsaicin challenge post-injection of test protein (average of responses at 15’ and 30’). Capsaicin challenge is achieved by injection of 10 pL of a 0.3% solution. Sample dilutions are prepared in 0.5% BSA/saline.

[0646] The ability of a test protein to inhibit streptozotocin (STZ)- induced mechanical (tactile) allodynia in rats is evaluated. STZ-induced mechanical allodynia in rats is achieved by injection of streptozotocin (i.p. or i.v.) which yields destruction of pancreatic β-cells leading to loss of insulin production, with concomitant metabolic stress (hyperglycemia and hyperlipidemia). As such, STZ induces Type I diabetes. In addition, STZ treatment leads to progressive development of neuropathy, which serves as a model of chronic pain with hyperalgesia and allodynia that may reflect signs observed in diabetic humans (peripheral diabetic neuropathy).

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PCT/US2016/049106 [0647] Male Sprague-Dawley rats (250-300 g) are treated with 65 mg/kg STZ in citrate buffer (I. V.) and blood glucose and lipid are measured weekly to define the readiness of the model. Paw Withdrawal Threshold (PWT) is measured in response to a Von Frey filament stimulus series over a period of time. Allodynia is said to be established when the PWT on two consecutive test dates (separated by 1 week) measures below 6 g on the scale. At this point, rats are randomized to either a saline group (negative efficacy control), gabapentin group (positive efficacy control) or a test group. Test materials (20-25 μΐ) are injected subcutaneously as a single injection and the PWT is measured at 1 day post-treatment and periodically thereafter over a 2-week period.

Sequence listings [0648] SEQ ID NO: 1, PA, NCBI Ref Seq: NP_ 052806

MKKRKVLIPL MALSTILVSS TGNLEVIQAE VKQENRLLNE SESSSQGLLG YYFSDLNFQA

PMWTSSTTG DLSIPSSELE NIPSENQYFQ SAIWSGFIKV KKSDEYTFAT SADNHVTMWV

121 DDQEVINKAS NSNKIRLEKG RLYQIKIQYQ RENPTEKGLD FKLYWTDSQN KKEVISSDNL

181 QLPELKQKSS NSRKKRSTSA GPTVPDRDND GIPDSLEVEG YTVDVKNKRT FLSPWISNIH

241 EKKGLTKYKS SPEKWSTASD PYSDFEKVTG RIDKNVSPEA RHPLVAAYPI VHVDMENIIL

301 SKNEDQSTQN TDSQTRTISK NTSTSRTHTS EVHGNAEVHA SFFDIGGSVS AGFSNSNSST

361 VAIDHSLSLA GERTWAETMG LNTADTARLN ANIRYVNTGT APIYNVLPTT SLVLGKNQTL

421 ATIKAKENQL SQILAPNNYY PSKNLAPIAL NAQDDFSSTP ITMNYNQFLE LEKTKQLRLD

481 TDQVYGNIAT YNFENGRVRV DTGSNWSEVL PQIQETTARI IFNGKDLNLV ERRIAAVNPS

541 DPLETTKPDM TLKEALKIAF GFNEPNGNLQ YQGKDITEFD FNFDQQTSQN IKNQLAELNA

601 TNIYTVLDKI KLNAKMNILI RDKRFHYDRN NIAVGADESV VKEAHREVIN SSTEGLLLNI

661 DKDIRKILSG YIVEIEDTEG LKEVINDRYD MLNISSLRQD GKTFIDFKKY NDKLPLYISN

721 PNYKVNVYAV TKENTIINPS ENGDTSTNGI KKILIFSKKG YEIG [0649] SEQ ID NO: 2 Diptheria toxin NCBI Ref Seq: WP 003850266

MSRKLFASIL IGALLGIGAP PSAHAGADDV VDSSKSFVME NFSSYHGTKP GYVDSIQKGI

QKPKSGTQGN YDDDWKGFYS TDNKYDAAGY SVDNENPLSG KAGGWKVTY PGLTKVLALK

121 VDNAETIKKE LGLSLTEPLM EQVGTEEFIK RFGDGASRW LSLPFAEGSS SVEYINNWEQ

181 AKALSVELEI NFETRGKRGQ DAMYEYMAQA CAGNRVRRSV GSSLSCINLD WDVIRDKTKT

241 KIESLKEHGP IKNKMSESPN KTVSEEKAKQ YLEEFHQTAL EHPELSELKT VTGTNPVFAG

301 ANYAAWAVNV AQVIDSETAD NLEKTTAALS ILPGIGSVMG IADGAVHHNT EEIVAQSIAL

361 SSLMVAQAIP LVGELVDIGF AAYNFVESII NLFQWHNSY NRPAYSPGHK TQPFLHDGYA

421 VSWNTVEDSI IRTGFQGESG HDIKITAENT PLPIAGVLLP TIPGKLDVNK SKTHISVNGR

481 KIRMRCRAID GDVTFCRPKS PVYVGNGVHA NLHVAFHRSS SEKIHSNEIS SDSIGVLGYQ

541 KTVDHTKVNS KLSLFFEIKS [0650] SEQ ID NO: 3 Pseudomonas aeruginosa exotoxin A (PTx) NCBI Ref Seq: NP_ 249839

MHLTPHWIPL VASLGLLAGG SFASAAEEAF DLWNECAKAC VLDLKDGVRS SRMSVDPAIA 61 DTNGQGVLHY SMVLEGGNDA LKLAIDNALS ITSDGLTIRL EGGVEPNKPV RYSYTRQARG

121 SWSLNWLVPI GHEKPSNIKV FIHELNAGNQ LSHMSPIYTI EMGDELLAKL ARDATFFVRA 181 HESNEMQPTL AISHAGVSW MAQAQPRREK RWSEWASGKV LCLLDPLDGV YNYLAQQRCN 241 LDDTWEGKIY RVLAGNPAKH DLDIKPTVIS HRLHFPEGGS LAALTAHQAC HLPLETFTRH

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301	RQPRGWEQLE	QCGYPVQRLV	ALYLAARLSW	NQVDQVIRNA	LASPGSGGDL	GEAIREQPEQ
361	ARLALTLAAA	ESERFVRQGT	GNDEAGAASA	DWSLTCPVA	AGECAGPADS	GDALLERNYP
421	TGAEFLGDGG	DISFSTRGTQ	NWTVERLLQA	HRQLEERGYV	FVGYHGTFLE	AAQSIVFGGV
481	RARSQDLDAI	WRGFYIAGDP	ALAYGYAQDQ	EPDARGRIRN	GALLRVYVPR	SSLPGFYRTG
541	LTLAAPEAAG	EVERLIGHPL	PLRLDAITGP	EEEGGRLETI	LGWPLAERTV	VIPSAIPTDP
601	RNVGGDLDPS	SIPDKEQAIS	ALPDYASQPG	KPPREDLK
SEQ ID NO: 4 Botulinum toxin NCBI Ref Seq: YP 001386738
1	MPFVNKQFNY	KDPVNGVDIA	YIKIPNAGQM	QPVKAFKIHN	KIWVIPERDT	FTNPEEGDLN
61	PPPEAKQVPV	SYYDSTYLST	DNEKDNYLKG	VTKLFERIYS	TDLGRMLLTS	IVRGIPFWGG
121	STIDTELKVI	DTNCINVIQP	DGSYRSEELN	LVIIGPSADI	IQFECKSFGH	EVLNLTRNGY
181	GSTQYIRFSP	DFTFGFEESL	EVDTNPLLGA	GKFATDPAVT	LAHELIHAGH	RLYGIAINPN
241	RVFKVNTNAY	YEMSGLEVSF	EELRTFGGHD	AKFIDSLQEN	EFRLYYYNKF	KDIASTLNKA
301	KSIVGTTASL	QYMKNVFKEK	YLLSEDTSGK	FSVDKLKFDK	LYKMLTEIYT	EDNFVKFFKV
361	LNRKTYLNFD	KAVFKINIVP	KVNYTIYDGF	NLRNTNLAAN	FNGQNTEINN	MNFTKLKNFT
421	GLFEFYKLLC	VRGIITSKTK	SLDKGYNKAL	NDLCIKVNNW	DLFFSPSEDN	FTNDLNKGEE
481	ITSDTNIEAA	EENISLDLIQ	QYYLTFNFDN	EPENISIENL	SSDIIGQLEL	MPNIERFPNG
541	KKYELDKYTM	FHYLRAQEFE	HGKSRIALTN	SVNEALLNPS	RVYTFFSSDY	VKKVNKATEA
601	AMFLGWVEQL	VYDFTDETSE	VSTTDKIADI	TIIIPYIGPA	LNIGNMLYKD	DFVGALIFSG
661	AVILLEFIPE	IAIPVLGTFA	LVSYIANKVL	TVQTIDNALS	KRNEKWDEVY	KYIVTNWLAK
721	VNTQIDLIRK	KMKEALENQA	EATKAIINYQ	YNQYTEEEKN	NINFNIDDLS	SKLNESINKA
781	MININKFLNQ	CSVSYLMNSM	IPYGVKRLED	FDASLKDALL	KYIYDNRGTL	IGQVDRLKDK
841	VNNTLSTDIP	FQLSKYVDNQ	RLLSTFTEYI	KNIINTSILN	LRYESNHLID	LSRYASKINI
901	GSKVNFDPID	KNQIQLFNLE	SSKIEVILKN	AIVYNSMYEN	FSTSFWIRIP	KYFNSISLNN
961	EYTIINCMEN	NSGWKVSLNY	GEIIWTLQDT	QEIKQRWFK	YSQMINISDY	INRWIFVTIT
1021	NNRLNNSKIY	INGRLIDQKP	ISNLGNIHAS	NNIMFKLDGC	RDTHRYIWIK	YFNLFDKELN
1081	EKEIKDLYDN	QSNSGILKDF	WGDYLQYDKP	YYMLNLYDPN	KYVDVNNVGI	RGYMYLKGPR
1141	GSVMTTNIYL	NSSLYRGTKF	IIKKYASGNK	DNIVRNNDRV	YINVWKNKE	YRLATNASQA
1201	GVEKILSALE	IPDVGNLSQV	WMKSKNDQG	ITNKCKMNLQ	DNNGNDIGFI	GFHQFNNIAK
1261	LVASNWYNRQ	IERSSRTLGC	SWEFIPVDDG	WGERPL
SEQ ID NO: 5 Tetanus toxin	NCBI Ref Seq: WP_023439719
1	MPITINNFRY	SDPVNNDTII	MMEPPYCKGL	, DIYYKAFKIT	DRIWIVPERY	EFGTKPEDFN
61	PPSSLIEGAS	EYYDPNYLRT	DSDKDRFLQT	MVKLFNRIKN	NVAGEALLDK	IINAIPYLGN
121	SYSLLDKFDT	NSNSVSFNLS	EQDPSGATTK	SAMLTNLIIF	GPGPVLNKNE	VRGIVLRVDN
181	KNYFPCRDGF	GSIMQMAFCP	EYIPTFDNVI	ENITSLTIGK	SKYFQDPALL	LMHELIHVLH
241	GLYGMQVSSH	EIIPSKQEIY	MQHTYPISAE	ELFTFGGQDA	NLISIDIKND	LYEKTLNDYK
301	AIANKLSQVT	SCNDPNIDID	SYKQIYQQKY	QFDKDSNGQY	IVNEDKFQIL	YNSIMYGFTE
361	IELGKKFNIK	TRLSYFSMNH	DPVKIPNLLD	DTIYNDTEGF	NIESKDLKSE	YKGQNMRVNT
421	NAFRNVDGSG	LVSKLIGLCK	KIIPPTNIRE	NLYNRTASLT	DLGGELCIKI	KNEDLTFIAE
481	KNSFSEEPFQ	DETVSYNTKN	KPLNFNYSLD	KIILDYNLQS	KITLPNDRTT	PVTKGIPYAP
541	KYKSNAASTI	EIHNIDDNTI	YQYLYAQKSP	TTLQRITMTN	SVDDALINST	KIYSYFPSVI
601	SKVNQGAQGI	LFLQWVRDII	DDFTNESSQK	TTIDKISDVS	TIVPYIGPAL	NIVKQGYEGN
661	FIGALETTGV	VLLLEYIPEI	TLPVIAALSI	AESSTQKEKI	IKTIDNFLEK	RYEKWIEVYK
721	LIKAKWLGTV	NTQFQKRSYQ	MYRSLEYQVD	AIKKIIDYEY	KIYSGPDKEQ	IADEINNLKN
781	KLEEKANKAM	ININIFMRES	SRSFLVNQMI	NEAKKQLLEF	DTQSKNILMQ	YIKANSKFIG

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841 ITELKKLESK INKVFSTPIP FSYSKNLDCW VDNEEDIDVI LKKSTILNLD 901 GFNSSVITYP DAQLVPGING KAIHLVNNES SEVIVHKAMD IEYNDMFNNF 961 VSASHLEQYG TNEYSIISSM KKYSLSIGSG WSVSLKGNNL IWTLKDSAGE

1021 DKFNAYLANK WVFITITNDR LSSANLYING VLMKNAEITG LGAIREDNNI 1081 NQYVSIDKFR IFCKALNPKE IEKLYTSYLS ITFLRDFWGN PLRYDTEYYL 1141 QLKNITDYMY LTNAPSYTNG KLNIYYRRLY SGLKFIIKRY TPNNEIDSFV 1201 SYNNNEHIVG YPKDGNAFNN LDRILRVGYN APGIPLYKKM EAVKLRDLKT 1261 KNASLGLVGI RNGQIGNDPN RDILIASNWY FNHLKDKTLT CDWYFVPTDE [0653] SEQ ID NO: 6 Edema Factor NCBI Ref Seq: NP 052818

MTRNKFIPNK FSIISFSVLL FAISSSQAIE VNAMNEHYTE SDIKRNHKTE 61 DSINNLVKTE FTNETLDKIQ QTQDLLKKIP KDVLEIYSEL GGEIYFTDID

121 SEEEKNSMNS RGEKVPFASR FVFEKKRETP KLIINIKDYA INSEQSKEVY 181 IISKDKSLDP EFLNLIKSLS DDSDSSDLLF SQKFKEKLEL NNKSIDINFI 241 FSLAFSYYFA PDHRTVLELY APDMFEYMNK LEKGGFEKIS ESLKKEGVEK 301 ALKASGLVPE HADAFKKIAR ELNTYILFRP VNKLATNLIK SGVATKGLNV 361 AGYIPFDQDL SKKHGQQLAV EKGNLENKKS ITEHEGEIGK IPLKLDHLRI 421 KGKKEIDNGK KYYLLESNNQ VYEFRISDEN NEVQYKTKEG KITVLGEKFN 481 VEGVLKPLTA DYDLFALAPS LTEIKKQIPQ KEWDKWNTP NSLEKQKGVT 541 KPDSTKGTLS NWQKQMLDRL NEAVKYTGYT GGDWNHGTE QDNEEFPEKD 601 EFILTKNWEM TGRFIEKNIT GKDYLYYFNR SYNKIAPGNK AYIEWTDPIT 661 AEFIKNLSSI RRSSNVGVYK DSGDKDEFAK KESVKKIAGY LSDYYNSANH 721 SIFRGIQAYN EIENVLKSKQ IAPEYKNYFQ YLKERITNQV QLLLTHQKSN 781 NFTENETDNF EVFQKIIDEK [0654] SEQ ID NO: 7 Lethal Factor NCBI Ref Seq: NP 052803

MNIKKEFIKV ISMSCLVTAI TLSGPVFIPL VQGAGGHGDV GMHVKEKEKN 61 RNKTQEEHLK EIMKHIVKIE VKGEEAVKKE AAEKLLEKVP SDVLEMYKAI

121 ITKHISLEAL SEDKKKIKDI YGKDALLHEH YVYAKEGYEP VLVIQSSEDY 181 YYEIGKILSR DILSKINQPY QKFLDVLNTI KNASDSDGQD LLFTNQLKEH 241 QNSNEVQEVF AKAFAYYIEP QHRDVLQLYA PEAFNYMDKF NEQEINLSLE 301 YEKWEKIKQH YQHWSDSLSE EGRGLLKKLQ IPIEPKKDDI IHSLSQEEKE 361 DFLSTEEKEF LKKLQIDIRD SLSEEEKELL NRIQVDSSNP LSEKEKEFLK 421 INQRLQDTGG LIDSPSINLD VRKQYKRDIQ NIDALLHQSI GSTLYNKIYL 481 ATLGADLVDS TDNTKINRGI FNEFKKNFKY SISSNYMIVD INERPALDNE 541 DTRAGYLENG KLILQRNIGL EIKDVQIIKQ SEKEYIRIDA KWPKSKIDT 601 QEWNKALGLP KYTKLITFNV HNRYASNIVE SAYLILNEWK NNIQSDLIKK 661 RFVFTDITLP NIAEQYTHQD EIYEQVHSKG LYVPESRSIL LHGPSKGVEL 721 FGHAVDDYAG YLLDKNQSDL VTNSKKFIDI FKEEGSNLTS YGRTNEAEFF 781 DHAERLKVQK NAPKTFQFIN DQIKFIINS [0655] SEQ ID NO: 8 ω-conotoxin Μ VII A NCBI Ref Seq: ADB93081

MKLTCWIVA VLLLTACQLI TADDSRGTQK HRALRSTTKL SMSTRCKGKG 61 CTGSCRSGKC G

INNDIISDIS

TVSFWLRVPK

VRQITFSDLS

TLKLDRCNNN

IPVASSSKDV

KSGDFIKLYV

YSVQLKLYDD

GWTND

KNKTEKEKFK

LVEHKELQDL

YEIGKGISLD

KENLTEFQHA

DRIDVLKGEK

HGKSSDWGPV

EELKENGIIL

WRNIEVMAKN

NLLIKYGIER

NEIFIINPEG

KAKINTIPTS

IFSQEKKRKI

IEFKLLYKQL

KDENKRKDEE

GGKIYIVDGD

VENTEKALNV

PTDFSVEFLE

ELKDQRMLSR

LLKRIQIDSS

KLKLDIQPYD

YENMNINNLT

RLKWRIQLSP

KIQEAQLNIN

VTNYLVDGNG

RNDSEGFIHE

AEAFRLMHST

AKCSRLMYDC [0656] SEQ ID NO: 9 μ-conotoxin Swiss-Prot: Pl5472.1

ACSGRGSRCP PQCCMGLRCG RGNPQKCIGA HEDV [0657] SEQ ID NO: 10 δ-conotoxin NCBI ID: AKD43185

LNKRCAGIGS FCGLPGLVDC CSGRCFIVCL P [0658] SEQ ID NO: 11, Shiga toxin A-part

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PCT/US2016/049106 [0659] KEFTLDFSTAKTYVDSLNVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIV ERNNLYVTGFVNRTNNVFYRFADFSHVTFPGTTAVTLSGDSSYTTLQRVAGISRTGMQINRHSLTTSYLDLMSHSGT SLTQSVARAMLRFVTVTAEALRFRQIQRGFRTTLDDLSGRSYVMTAEDVDLTLNWGRLSSVLPDYHGQDSVRVGRIS

FGSINAILGSVALILNCHHHASRVARMASDEFPSMCPADGRVRGITHNKILWDSSTLGAILMRRTISS [0660] SEQ ID NO: 12, Shiga toxin B-part [0661] TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR [0662] Exotoxin A A-part and B-part [0663] SEQ ID NO: 13 [0664] AEEAFDLWNECAKACVLDLKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGNDALKLAIDNALSITSDGL TIRLEGGVEPNKPVRYSYTRQARGSWSLNWLVPIGHEKPSNIKVFIHELNAGNQLSHMSPIYTIEMGDELLAKLARD ATFFVRAHESNEMQPTLAISHAGVSWMAQAQPRREKRWSEWASGKVLCLLDPLDGVYNYLAQQRCNLDDTWEGKIY RVLAGNPAKHDLDIKPTVISHRLHFPEGGSLAALTAHQACHLPLETFTRHRQPRGWEQLEQCGYPVQRLVALYLAAR LSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAANADWSLTCPVAAGEC AGPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVR ARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGH PLPLRLDAITGPEEEGGRLETILGWPLAERTWIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGKPPRE

DLK [0665] Cholera toxin [0666] SEQ ID NO: 14, Cholera toxin , Al component [0667] NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHL VGQTILSGHSTYYLYVLATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDR

YYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSS [0668] SEQ ID NO: 15, Cholera toxin , A2 component [0669] MSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL [0670] SEQ ID NO: 16, Cholera toxin , B component [0671] TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPSSQHID SQKKAIERMKDTLRIAYLTEA KVEKLCTWNNKTPHAIAAISMAN [0672] SEQ ID NO: 17, Catalytic chain of tetanus (the L-chain sequence) [0673] MPITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITDRIWIVPERYEFGTKPEDF NPPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIPYLGNSYS LLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFGPGPVLNKNEVRGIVLRVDNKNYFPCR DGFGSIMQMAFCPEYVPTFDNVIENITSLTIGKSKYFQDPALLLMHELIHVLHGLYGMQVSSHE IIPSKQEIYMQHTYPISAEELFTFGGQDANLISIDIKNDLYEKTLNDYKAIANKLSQVTSCNDP NIDIDSYKQIYQQKYQFDKDSNGQYIVNEDKFQILYNSIMYGFTEIELGKKFNIKTRLSYFSMN

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HDPVKIPNLLDDTIYNDTEGFNIESKDLKSEYKGQNMRVNTNAFRNVDGSGLVSKLIGLCKKII

PPTNIRENLYNRT [0674] Ricin toxin [0675] SEQ ID NO: 18, Ricin toxin , A component [0676] IFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVT LALDVTNAYWGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAI SALYYYSTGGTQLPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGA FASPIQLQRRNGSKFSVYDVSILIPIIALMVYRCAPPPSSQF [0677] SEQ ID NO: 19, Ricin toxin , B component

ADVCMDPEPIVRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYVMI

YDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSGTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQA

NSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETWKILSCGPASSGQRWMFKNDGTILNLYSGL

VLDVRASDPSLKQIILYPLHGDPNQIWLPLF [0678] SEQ ID NO: 20, BTx/A light chain (native): BTx/A Amino acids 1-448

MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTY

LSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVII

GPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHR

LYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTA

SLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYT

IYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVRGIITSKTKSLDKGYNK [0679] SEQ ID NO: 21, BTx/A light chain Amino acids 1-430

MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTY

LSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVII

GPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHR

LYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTA

SLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYT

IYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLC [0680] SEQ ID NO: 22, BTx/B light chain (native): BTx/B Amino acids 1-441

MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFNKSSGIFNRDVCEYYDPD

YLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGI FANLIIFGPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHE LIHVLHGLYGIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLV

CISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKN

LLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMCKSVK [0681] SEQ ID NO: 23, BTx/B Amino acids 1-437

MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFNKSSGIFNRDVCEYYDPD YLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGI FANLIIFGPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHE

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LIHVLHGLYGIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLV CISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKN LLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMC [0682] SEQ ID NO: 24, BTx/Cl light chain (native): BTx/Cl Amino acids 1-449

MPITINNFNYSDPVDNKNILYLDTHLNTLANEPEKAFRITGNIWVIPDRFSRNSNPNLNKPPRVTSPKSGYYDPNYL STDSDKDPFLKEIIKLFKRINSREIGEELIYRLSTDIPFPGNNNTPINTFDFDVDFNSVDVKTRQGNNWVKTGSINP SVIITGPRENIIDPETSTFKLTNNTFAAQEGFGALSIISISPRFMLTYSNATNDVGEGRFSKSEFCMDPILILMHEL NHAMHNLYGIAIPNDQTISSVTSNIFYSQYNVKLEYAEIYAFGGPTIDLIPKSARKYFEEKALDYYRSIAKRLNSIT TANPSSFNKYIGEYKQKLIRKYRFWESSGEVTVNRNKFVELYNELTQIFTEFNYAKIYNVQNRKIYLSNVYTPVTA NILDDNVYDIQNGFNIPKSNLNVLFMGQNLSRNPALRKVNPENMLYLFTKFCHKAIDGRSLYNK [0683] SEQ ID NO: 25, BTx/D light chain (native): BTx/D Amino acids 1-442

MTWPVKDFNYSDPVNDNDILYLRIPQNKLITTPVKAFMITQNIWVIPERFSSDTNPSLSKPPRPTSKYQSYYDPSYL STDEQKDTFLKGIIKLFKRINERDIGKKLINYLWGSPFMGDSSTPEDTFDFTRHTTNIAVEKFENGSWKVTNIITP SVLIFGPLPNILDYTASLTLQGQQSNPSFEGFGTLSILKVAPEFLLTFSDVTSNQSSAVLGKSIFCMDPVIALMHEL THSLHQLYGINIPSDKRIRPQVSEGFFSQDGPNVQFEELYTFGGLDVEIIPQIERSQLREKALGHYKDIAKRLNNIN KTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFWNIDKFNSLYSDLTNVMSEWYSSQYNVKNRTHYFSRHYLPVFA NILDDNIYTIRDGFNLTNKGFNIENSGQNIERNPALQKLSSESWDLFTKVCLRLTK [0684] SEQ ID NO: 26, BTx/ E light chain (native): BTx/ E Amino acids 1-422

MPTINSFNYNDPVNNRTILYIKPGGCQQFYKSFNIMKNIWIIPERNVIGTIPQDFLPPTSLKNGDSSYYDPNYLQSD

QEKDKFLKIVTKIFNRINDNLSGRILLEELSKANPYLGNDNTPDGDFIINDASAVPIQFSNGSQSILLPNVIIMGAE

PDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFKDNSMNEFIQDPALTLMHELIHSLHGLYGAKGITTKY

TITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYG

LDKDASGIYSVNINKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFR

GQNANLNPRIITPITGRGLVKKIIRFCKNIVSVKGIR [0685] SEQ ID NO: 27, BTx/ F light chain (native): BTx/ F Amino acids 1-436

MPVAINSFNYNDPVNDDTILYMQIPYEEKSKKYYKAFEIMRNVWIIPERNTIGTNPSDFDPPASLKNGSSAYYDPNY

LTTDAEKDRYLKTTIKLFKRINSNPAGKVLLQEISYAKPYLGNDHTPIDEFSPVTRTTSVNIKLSTNVESSMLLNLL

VLGAGPDIFESCCYPVRKLIDPDWYDPSNYGFGSINIVTFSPEYEYTFNDISGGHNSSTESFIADPAISLAHELIH

ALHGLYGARGVTYEETIEVKQAPLMIAEKPIRLEEFLTFGGQDLNIITSAMKEKIYNNLLANYEKIATRLSEVNSAP

PEYDINEYKDYFQWKYGLDKNADGSYTVNENKFNEIYKKLYSFTESDLANKFKVKCRNTYFIKYEFLKVPNLLDDDI

YTVSEGFNIGNLAVNNRGQSIKLNPKIIDSIPDKGLVEKIVKFCKSVIPRK [0686] SEQ ID NO: 28, BTx/ G light chain (native): BTx/ G Amino acids 1-442

MPVNIKXFNYNDPINNDDIIMMEPFNDPGPGTYYKAFRIIDRIWIVPERFTYGFQPDQFNASTGVFSKDVYEYYDPT

YLKTDAEKDKFLKTMIKLFNRINSKPSGQRLLDMIVDAIPYLGNASTPPDKFAANVANVSINKKIIQPGAEDQIKGL

MTNLIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFCPSCLNVFNNVQENKDTSIFSRRAYFADPALTLMHE

LIHVLHGLYGIKISNLPITPNTKEFFMQHSDPVQAEELYTFGGHDPSVISPSTDMNIYNKALQNFQDIANRLNIVSS

AQGSGIDISLYKQIYKNKYDFVEDPNGKYSVDKDKFDKLYKALMFGFTETNLAGEYGIKTRYSYFSEYLPPIKTEKL

LDNTIYTQNEGFNIASKNLKTEFNGQNKAVNKEAYEEISLEHLVIYRIAMCKPVMYK

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PCT/US2016/049106 [0687] SEQ ID NO: 29, BTx/ A (light chain and heavy chain translocation domain) Amino acids 1-872 [0688] MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVS YYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEE LNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHEL IHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKS IVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIV PKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVRGIITSKTKSLDKGYNKALNDLCIK VNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPN IERFPNGKKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQL

VYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSGAVILLEFIPEIAIPVLGTFALVSYIAN

KVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINF

NIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDKV

NNTLSTDIPFQLSKYVDNQRLLSTFTEYIKN [0689] SEQ ID NO: 30, BTx/A, (light chain and heavy chain translocation domain) Amino acids 1-842 [0690] MPFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVS YYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEE LNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHEL IHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKS IVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIV PKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVRGIITSKTKSLDKGYNKALNDLCIK VNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPN IERFPNGKKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQL

VYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSGAVILLEFIPEIAIPVLGTFALVSYIAN

KVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINF

NIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDKV

N [0691] SEQ ID NO: 31, BTx/ B (light chain and heavy chain translocation domain) Amino acids 1-863

MPVTINNFNY NDPIDNNNII MMEPPFARGT GRYYKAFKIT DRIWIIPERY TFGYKPEDFN KSSGIFNRDV

CEYYDPDYLN TNDKKNIFLQ TMIKLFNRIK SKPLGEKLLE MIINGIPYLG DRRVPLEEFN TNIASVTVNK

LISNPGEVER KKGIFANLII FGPGPVLNEN ETIDIGIQNH FASREGFGGI MQMKFCPEYV SVFNNVQENK

GASIFNRRGY FSDPALILMH ELIHVLHGLY GIKVDDLPIV PNEKKFFMQS TDAIQAEELY TFGGQDPSII

TPSTDKSIYD KVLQNFRGIV DRLNKVLVCI SDPNININIY KNKFKDKYKF VEDSEGKYSI DVESFDKLYK

SLMFGFTETN IAENYKIKTR ASYFSDSLPP VKIKNLLDNE IYTIEEGFNI SDKDMEKEYR GQNKAINKQA

YEEISKEHLA VYKIQMCKSV KAPGICIDVD NEDLFFIADK NSFSDDLSKN ERIEYNTQSN YIENDFPINE

LILDTDLISK IELPSENTES LTDFNVDVPV YEKQPAIKKI FTDENTIFQY LYSQTFPLDI RDISLTSSFD

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DALLFSNKVY

GNETAKGNFE

VAQWLSTVNT

INNFINGCSV

SIYTNDTILI

SFFSMDYIKT

NAFEIAGASI

QFYTIKEGMY

SYLMKKMIPL

EMFNKYNSEI

ANKWEAGLF

LLEFIPELLI

KALNYQAQAL

AVEKLLDFDN

LNN

AGWVKQIVND

PWGAFLLES

EEIIKYRYNI

TLKKNLLNYI

FVIEANKSNT

YIDNKNKIIK

YSEKEKSNIN

DENKLYLIGS

MDKIADISLI

TIDNALTKRN

IDFNDINSKL

AEYEKSKVNK

VPYIGLALNV

EKWSDMYGLI

NEGINQAIDN

YLKTIMPFDL

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Claims (51)

1. A fusion protein comprising:

a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron;

b) a targeting moiety (TM) that is capable of binding to a Binding Site on said nociceptor neuron, which Binding Site is capable of undergoing endocytosis to be incorporated into an endosome within said nociceptor neuron, and wherein said nociceptor neuron expresses said SNARE protein; and

c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of said nociceptor neuron;

with the proviso that parts (a), (b), and (c) are of heterologous origin or include at least one heterologous moiety or domain.

2. The fusion protein of claim 1, the fusion protein further comprising a protease cleavage site at which site the fusion protein is cleavable by a protease, wherein the protease cleavage site is located C-terminal of the non-cytotoxic protease in the fusion protein.

3. The fusion protein of claim 1 or 2, wherein the non-cytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a non-Clostridial botulinum-like toxin.

4. The fusion protein of claim 2, wherein the TL comprises a clostridial neurotoxin translocation domain or a non-Clostridial botulinum-like toxin translocation domain.

5. The fusion protein of claim 3, wherein the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx).

6. The fusion protein of claim 5, wherein the TM binds to the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

7. The fusion protein of claim 5 or 6, wherein the TM is an anthrax toxin protective antigen (PA) or a C-terminal receptor-binding domain of PA or a PA fragment thereof that retains binding activity to ANTXR2.

8. The fusion protein according to claim 7, wherein the PA is resistant to furin cleavage.

9. The fusion protein according to claim 7, wherein the C-terminal receptor-binding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2-d4, and PAd4.

10. The fusion protein according to claim 9, wherein the PAd4 is resistant to cleavage by a protease.

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11. The fusion protein according to claim 10, wherein the protease is Lys C or furin.

12. A fusion protein comprising:

a) a non-cytotoxic protease, which protease is capable of cleaving a SNARE protein in a nociceptor neuron; and

b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or PA fragment binds a receptor expressed on the nociceptor neuron.

13. The fusion protein of claim 12, wherein the non-cytotoxic protease comprises a clostridial neurotoxin L-chain or an L-chain from a non-Clostridial botulinum-like toxin.

14. The fusion protein of claim 13, wherein the clostridial neurotoxin is a botulinum neurotoxin (BTx) or tetanus neurotoxin (TTx).

15. The fusion protein of claim 13, wherein the clostridial neurotoxin L-chain is selected from Table 1.

16. The fusion protein of claim 12, wherein the receptor that PA binds to is expressed on the nociceptor neuron is ANTXR2 (CMG2).

17. The fusion protein of claim 11, wherein the protein capable of binding to PA is:

i) an anthrax toxin lethal factor (LF); or ii) an anthrax toxin edema factor (EF).

18. The fusion protein of claim 17, wherein PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

19. The fusion protein of claim 17, wherein PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

20. A fusion protein comprising:

a) a disulfide-containing peptide toxin (these include the channel blocking toxins having a cysteine-knot motif), which is capable of blocking ion channels in a nociceptor neuron; and

b) a targeting moiety (TM) that is capable of binding to a binding site on the nociceptor neuron, wherein the nociceptor neuron expresses said ion channels therein (e.g., sodium or calcium or both sodium and calcium);

2E The fusion protein of claim 20, wherein the disulfide-containing peptide toxin comprises a cysteine knot motif.

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22. The fusion protein of claim 20, wherein the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

23. The fusion protein according to claim 20, wherein the TM is selected from the group consisting of:

i) an anthrax toxin protective antigen (PA);

ii) a C-terminal receptor-binding domain of PA;

iii) a nociceptor neuron-binding protein.

24. The fusion protein according to claim 23, wherein the PA or C-terminal receptor-binding domain of PA interacts with binds the ANTXR2 (CMG2) receptor expressed on the nociceptor neuron.

25. The fusion protein according to claim 23 or 24, wherein the PA is a mutant PA resistant to furin cleavage.

26. The fusion protein according to claim 23 or 24, wherein the C-terminal receptor-binding domain of PA is selected from the group consisting of PA63, PAd3-d4, PAd2-d4, and PAd4.

27. The fusion protein according to claim 26, wherein the PAd4 is is resistant to cleavage by a protease.

28. The fusion protein according to claim 27, wherein the protease is Lys C or furin.

29. The fusion protein of claim 23, wherein the nociceptor neuron-binding protein is an antibody.

30. The fusion protein of claim 29, wherein the antibody specifically binds to nerve growth factor receptor, the ANTXR2 receptor, or an ion-channel protein present on nociceptor neurons.

31. The fusion protein of claim 30, wherein the ion-channel protein is selected from Navi.7, Navi.8 or Navi.9.

32. A fusion protein comprising:

a) a disulfide-containing peptide toxin (this are channel blocking toxin having a cysteine-knot motif), which is capable of blocking sodium or calcium or both sodium and calcium channels in a nociceptor neuron; and

b) a protein capable of binding to an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the fragment binds a receptor expressed on the nociceptor neuron.

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33. The fusion protein of claim 32, wherein the disulfide-containing peptide toxin comprises a cysteine knot motif.

34. The fusion protein of claim 32, wherein the disulfide-containing peptide toxin is a conotoxin, an agatoxin, a delta-palutoxin, a huwentotoxin or a ProTx II toxin.

35. The fusion protein of claim 32, wherein the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

36. The fusion protein of claim 32, wherein the protein capable of binding to PA is:

i) an anthrax toxin lethal factor (LF); or ii) an anthrax toxin edema factor (EF).

37. The fusion protein of claim 36, wherein PA binding domain of LF is the N-terminal domain of LF, (abbreviated as LFPABD or LFn).

38. The fusion protein of claim 36, wherein PA binding domain of EF is the N-terminal domain of EF, (abbreviated as EFPABD or EFn).

39. A fusion protein comprising:

a) an AB toxin;

b) an anthrax toxin protective antigen (PA) or a PA fragment thereof, wherein the PA or fragment binds a receptor expressed on the nociceptor neuron; and

c) a translocation domain (TL) that is capable of translocating the protease from within an endosome, across the endosomal membrane and into the cytosol of the nociceptor neuron.

40. The fusion protein of claim 39, wherein the AB toxin is selected from

i) Ricin toxin, ii) Cholera toxin A-part and B-part;

iii) Pseudomonas aeruginosa Exotoxin A A-part and B-part;

iv) Shiga toxin A-part and B-part; and

v) Diphtheria toxin A-part and B-part.

41. The fusion protein of claim 39 or 40, wherein the PA-binding receptor expressed on the nociceptor neuron is ANTXR2 (CMG2).

42. The fusion protein of claim 39, wherein the PA fragment is a C-terminal receptor-binding domain of PA.

43. The fusion protein of claim 39, wherein the TL is

i) a clostridial neurotoxin translocation domain;

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44. A nucleic acid encoding a fusion protein according to any of the previous claims.

45. A vector comprising the nucleic acid of claim 44.

46. The vector of claim 45, wherein the vector is a plasmid, a bacteriophage, a phagmid, a cosmid, a viral vector, or a viral particle.

47. A cell comprising the nucleic acid of claim 44 or the vector of claim 45 or 46.

48. A method of producing the fusion protein of any of the preceding claim comprising:

a) culturing the cell of claim 44 in conditions such that the fusion protein is expressed; and

b) recovering the fusion protein.

49. The fusion protein produced by the method of claim 48.

50. A composition comprising the fusion protein of any one of claims 1-43.

51. A method for treatment of pain, the method comprising administering to a subject in need thereof the composition of any of the preceding claims.

52. A method of treating pain comprising administering to a subject in need thereof, native mature anthrax toxin protective antigen (PA) and anthrax toxin edema factor (EF), anthrax toxin lethal factor (LF) or any combination thereof.

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Figure 2

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Figure 3

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PA only

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Figure 7A

A B C

-«-, ^-*—1 ,-¹-.

A: Botulinum Neurotoxin Light chain and part of the heavy chain required for poreformation and translocation

1. BoNT/A(a.a. 1-872)

2. BoNT/A(a.a. 1-842)

3. BoNT/B (a.a. 1-863)

B: C: Linker 1. PA domain 4 (PA a.a. 596-735) 2. PA mutant for furin cleavage site

Figure 7B

A B C

-«-, !—*—! ,-¹-1

A: Tetanus Toxin (TeNT) light chain (or chain A) and part of the Heavy chain (or chain B) responsible for translocation

B: C: Linker 1. PA domain 4 (PA a.a 596-735) 2. PA mutant for furin cleavage site

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Figure 8A

A BCD

A. PA (Native form, nonmutated)

B: Botulinum Toxin C:

Light chains Linker

1. BoNT/ALC (a.a. 1-448)

2. BoNT/B LC (a.a. 1-441)

3. BoNT/C LC (a.a. 1-449)

4. BoNT/D LC (a.a. 1-442)

5. BoNT/Ε LC (a.a. 1-422)

6. BoNT/F LC (a.a. 1-436)

7. BoNT/G LC (a.a. 1-442)

Figure 8B

A BCD

A. PA (Native form, nonmutated)

B: Other Toxin enzyme domains C:

1. Tetanus Toxin Catalytic Linker Domain

2. Diptheria Toxin-A and B

3. Exotoxin A and B

4. Shiga toxin A and B

5. Cholera Toxin A and B

6. Ricin toxin

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Figure 9

A B C

S-S toxins / ICK toxins Linker peptide PA-derived

C B A

PA-derived Linker peptide S-S toxins / ICK toxins

A: S-S-containing toxins:

1. Conotoxins (w-conotoxin GVIA, w-conotoxin MVIIC)

2. Huwentotoxins

3. Agatoxins

4. Delta-palutoxins

B: C: Linker 1. PAd4 2. PA mutated for furin cleavage site

002806-084952-PCT_SL.txt SEQUENCE LISTING <110> COLLIER, R. JOHN CHIU, ISAAC PENTELUTE, BRADLEY L.

FOSTER, KEITH LIU, SAI MAN PALAN, SHILPA <120> COMPOSITIONS AND METHODS FOR TREATMENT OF PAIN <130> 002806-084952-PCT <140>

<141>

<150> 62/210,610 <151> 2015-08-27 <160> 149 <170> PatentIn version 3.5 <210> 1 <211> 764 <212> PRT <213> Bacillus anthracis <400> 1

Met 1 Lys Lys Arg Lys Val 5 Leu Ile Pro Leu 10 Met Ala Leu Ser Thr 15 Ile Leu Val Ser Ser Thr Gly Asn Leu Glu Val Ile Gln Ala Glu Val Lys 20 25 30 Gln Glu Asn Arg Leu Leu Asn Glu Ser Glu Ser Ser Ser Gln Gly Leu 35 40 45 Leu Gly Tyr Tyr Phe Ser Asp Leu Asn Phe Gln Ala Pro Met Val Val 50 55 60 Thr Ser Ser Thr Thr Gly Asp Leu Ser Ile Pro Ser Ser Glu Leu Glu 65 70 75 80 Asn Ile Pro Ser Glu Asn Gln Tyr Phe Gln Ser Ala Ile Trp Ser Gly 85 90 95 Phe Ile Lys Val Lys Lys Ser Asp Glu Tyr Thr Phe Ala Thr Ser Ala 100 105 110 Asp Asn His Val Thr Met Trp Val Asp Asp Gln Glu Val Ile Asn Lys 115 120 125 Ala Ser Asn Ser Asn Lys Ile Arg Leu Glu Lys Gly Arg Leu Tyr Gln 130 135 140

Page 1

002806-084952-PCT_SL.txt

Ile 145 Lys Ile Gln Tyr Gln Arg 150 Glu Asn Pro Thr 155 Glu Lys Gly Leu Asp 160 Phe Lys Leu Tyr Trp Thr Asp Ser Gln Asn Lys Lys Glu Val Ile Ser 165 170 175 Ser Asp Asn Leu Gln Leu Pro Glu Leu Lys Gln Lys Ser Ser Asn Ser 180 185 190 Arg Lys Lys Arg Ser Thr Ser Ala Gly Pro Thr Val Pro Asp Arg Asp 195 200 205 Asn Asp Gly Ile Pro Asp Ser Leu Glu Val Glu Gly Tyr Thr Val Asp 210 215 220 Val Lys Asn Lys Arg Thr Phe Leu Ser Pro Trp Ile Ser Asn Ile His 225 230 235 240 Glu Lys Lys Gly Leu Thr Lys Tyr Lys Ser Ser Pro Glu Lys Trp Ser 245 250 255 Thr Ala Ser Asp Pro Tyr Ser Asp Phe Glu Lys Val Thr Gly Arg Ile 260 265 270 Asp Lys Asn Val Ser Pro Glu Ala Arg His Pro Leu Val Ala Ala Tyr 275 280 285 Pro Ile Val His Val Asp Met Glu Asn Ile Ile Leu Ser Lys Asn Glu 290 295 300 Asp Gln Ser Thr Gln Asn Thr Asp Ser Gln Thr Arg Thr Ile Ser Lys 305 310 315 320 Asn Thr Ser Thr Ser Arg Thr His Thr Ser Glu Val His Gly Asn Ala 325 330 335 Glu Val His Ala Ser Phe Phe Asp Ile Gly Gly Ser Val Ser Ala Gly 340 345 350 Phe Ser Asn Ser Asn Ser Ser Thr Val Ala Ile Asp His Ser Leu Ser 355 360 365 Leu Ala Gly Glu Arg Thr Trp Ala Glu Thr Met Gly Leu Asn Thr Ala 370 375 380 Asp Thr Ala Arg Leu Asn Ala Asn Ile Arg Tyr Val Asn Thr Gly Thr

Page 2

385 390 002806-084952- 395 PCT_SL.txt 400 Ala Pro Ile Tyr Asn Val Leu Pro Thr Thr Ser Leu Val Leu Gly Lys 405 410 415 Asn Gln Thr Leu Ala Thr Ile Lys Ala Lys Glu Asn Gln Leu Ser Gln 420 425 430 Ile Leu Ala Pro Asn Asn Tyr Tyr Pro Ser Lys Asn Leu Ala Pro Ile 435 440 445 Ala Leu Asn Ala Gln Asp Asp Phe Ser Ser Thr Pro Ile Thr Met Asn 450 455 460 Tyr Asn Gln Phe Leu Glu Leu Glu Lys Thr Lys Gln Leu Arg Leu Asp 465 470 475 480 Thr Asp Gln Val Tyr Gly Asn Ile Ala Thr Tyr Asn Phe Glu Asn Gly 485 490 495 Arg Val Arg Val Asp Thr Gly Ser Asn Trp Ser Glu Val Leu Pro Gln 500 505 510 Ile Gln Glu Thr Thr Ala Arg Ile Ile Phe Asn Gly Lys Asp Leu Asn 515 520 525 Leu Val Glu Arg Arg Ile Ala Ala Val Asn Pro Ser Asp Pro Leu Glu 530 535 540 Thr Thr Lys Pro Asp Met Thr Leu Lys Glu Ala Leu Lys Ile Ala Phe 545 550 555 560 Gly Phe Asn Glu Pro Asn Gly Asn Leu Gln Tyr Gln Gly Lys Asp Ile 565 570 575 Thr Glu Phe Asp Phe Asn Phe Asp Gln Gln Thr Ser Gln Asn Ile Lys 580 585 590 Asn Gln Leu Ala Glu Leu Asn Ala Thr Asn Ile Tyr Thr Val Leu Asp 595 600 605 Lys Ile Lys Leu Asn Ala Lys Met Asn Ile Leu Ile Arg Asp Lys Arg 610 615 620 Phe His Tyr Asp Arg Asn Asn Ile Ala Val Gly Ala Asp Glu Ser Val 625 630 635 640

Page 3

002806-084952-PCT_SL.txt

Val Lys Glu Ala His Arg 645 Glu Val Ile Asn Ser Ser Thr Glu Gly Leu 650 655 Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr Ile 660 665 670 Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu Val Ile Asn Asp Arg 675 680 685 Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln Asp Gly Lys Thr Phe 690 695 700 Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro Leu Tyr Ile Ser Asn 705 710 715 720 Pro Asn Tyr Lys Val Asn Val Tyr Ala Val Thr Lys Glu Asn Thr Ile 725 730 735 Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys Lys 740 745 750 Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile Gly

755 760 <210> 2 <211> 560 <212> PRT <213> Corynebacterium diphtheriae <400> 2

Met 1 Ser Arg Lys Leu 5 Phe Ala Ser Ile Leu Ile Gly Ala Leu 10 Leu 15 Gly Ile Gly Ala Pro Pro Ser Ala His Ala Gly Ala Asp Asp Val Val Asp 20 25 30 Ser Ser Lys Ser Phe Val Met Glu Asn Phe Ser Ser Tyr His Gly Thr 35 40 45 Lys Pro Gly Tyr Val Asp Ser Ile Gln Lys Gly Ile Gln Lys Pro Lys 50 55 60 Ser Gly Thr Gln Gly Asn Tyr Asp Asp Asp Trp Lys Gly Phe Tyr Ser 65 70 75 80 Thr Asp Asn Lys Tyr Asp Ala Ala Gly Tyr Ser Val Asp Asn Glu Asn

85 90 95

Pro Leu Ser Gly Lys Ala Gly Gly Val Val Lys Val Thr Tyr Pro Gly Page 4

100 002806 105 -084952- PCT SL.txt 110 Leu Thr Lys Val Leu Ala Leu Lys Val Asp Asn Ala Glu Thr Ile Lys 115 120 125 Lys Glu Leu Gly Leu Ser Leu Thr Glu Pro Leu Met Glu Gln Val Gly 130 135 140 Thr Glu Glu Phe Ile Lys Arg Phe Gly Asp Gly Ala Ser Arg Val Val 145 150 155 160 Leu Ser Leu Pro Phe Ala Glu Gly Ser Ser Ser Val Glu Tyr Ile Asn 165 170 175 Asn Trp Glu Gln Ala Lys Ala Leu Ser Val Glu Leu Glu Ile Asn Phe 180 185 190 Glu Thr Arg Gly Lys Arg Gly Gln Asp Ala Met Tyr Glu Tyr Met Ala 195 200 205 Gln Ala Cys Ala Gly Asn Arg Val Arg Arg Ser Val Gly Ser Ser Leu 210 215 220 Ser Cys Ile Asn Leu Asp Trp Asp Val Ile Arg Asp Lys Thr Lys Thr 225 230 235 240 Lys Ile Glu Ser Leu Lys Glu His Gly Pro Ile Lys Asn Lys Met Ser 245 250 255 Glu Ser Pro Asn Lys Thr Val Ser Glu Glu Lys Ala Lys Gln Tyr Leu 260 265 270 Glu Glu Phe His Gln Thr Ala Leu Glu His Pro Glu Leu Ser Glu Leu 275 280 285 Lys Thr Val Thr Gly Thr Asn Pro Val Phe Ala Gly Ala Asn Tyr Ala 290 295 300 Ala Trp Ala Val Asn Val Ala Gln Val Ile Asp Ser Glu Thr Ala Asp 305 310 315 320 Asn Leu Glu Lys Thr Thr Ala Ala Leu Ser Ile Leu Pro Gly Ile Gly 325 330 335 Ser Val Met Gly Ile Ala Asp Gly Ala Val His His Asn Thr Glu Glu 340 345 350

Page 5

Ile Val Ala 355 Gln Ser Ile Ala 002806 Leu Ser 360 -084952- PCT_SL.txt Ser Leu Met Val 365 Ala Gln Ala Ile Pro Leu Val Gly Glu Leu Val Asp Ile Gly Phe Ala Ala Tyr Asn 370 375 380 Phe Val Glu Ser Ile Ile Asn Leu Phe Gln Val Val His Asn Ser Tyr 385 390 395 400 Asn Arg Pro Ala Tyr Ser Pro Gly His Lys Thr Gln Pro Phe Leu His 405 410 415 Asp Gly Tyr Ala Val Ser Trp Asn Thr Val Glu Asp Ser Ile Ile Arg 420 425 430 Thr Gly Phe Gln Gly Glu Ser Gly His Asp Ile Lys Ile Thr Ala Glu 435 440 445 Asn Thr Pro Leu Pro Ile Ala Gly Val Leu Leu Pro Thr Ile Pro Gly 450 455 460 Lys Leu Asp Val Asn Lys Ser Lys Thr His Ile Ser Val Asn Gly Arg 465 470 475 480 Lys Ile Arg Met Arg Cys Arg Ala Ile Asp Gly Asp Val Thr Phe Cys 485 490 495 Arg Pro Lys Ser Pro Val Tyr Val Gly Asn Gly Val His Ala Asn Leu 500 505 510 His Val Ala Phe His Arg Ser Ser Ser Glu Lys Ile His Ser Asn Glu 515 520 525 Ile Ser Ser Asp Ser Ile Gly Val Leu Gly Tyr Gln Lys Thr Val Asp 530 535 540 His Thr Lys Val Asn Ser Lys Leu Ser Leu Phe Phe Glu Ile Lys Ser 545 550 555 560

<210> 3 <211> 638 <212> PRT <213> Pseudomonas aeruginosa <400> 3

Met His Leu Thr Pro His Trp Ile Pro Leu Val Ala Ser Leu Gly Leu 1 5 10 15 Leu Ala Gly Gly Ser Phe Ala Ser Ala Ala Glu Glu Ala Phe Asp Leu Page 6

002806-084952-PCT_SL.txt 20 25 30

Trp Asn Glu Cys Ala Lys Ala Cys Val Leu Asp Leu Lys 45 Asp Gly Val 35 40 Arg Ser Ser Arg Met Ser Val Asp Pro Ala Ile Ala Asp Thr Asn Gly 50 55 60 Gln Gly Val Leu His Tyr Ser Met Val Leu Glu Gly Gly Asn Asp Ala 65 70 75 80 Leu Lys Leu Ala Ile Asp Asn Ala Leu Ser Ile Thr Ser Asp Gly Leu 85 90 95 Thr Ile Arg Leu Glu Gly Gly Val Glu Pro Asn Lys Pro Val Arg Tyr 100 105 110 Ser Tyr Thr Arg Gln Ala Arg Gly Ser Trp Ser Leu Asn Trp Leu Val 115 120 125 Pro Ile Gly His Glu Lys Pro Ser Asn Ile Lys Val Phe Ile His Glu 130 135 140 Leu Asn Ala Gly Asn Gln Leu Ser His Met Ser Pro Ile Tyr Thr Ile 145 150 155 160 Glu Met Gly Asp Glu Leu Leu Ala Lys Leu Ala Arg Asp Ala Thr Phe 165 170 175 Phe Val Arg Ala His Glu Ser Asn Glu Met Gln Pro Thr Leu Ala Ile 180 185 190 Ser His Ala Gly Val Ser Val Val Met Ala Gln Ala Gln Pro Arg Arg 195 200 205 Glu Lys Arg Trp Ser Glu Trp Ala Ser Gly Lys Val Leu Cys Leu Leu 210 215 220 Asp Pro Leu Asp Gly Val Tyr Asn Tyr Leu Ala Gln Gln Arg Cys Asn 225 230 235 240 Leu Asp Asp Thr Trp Glu Gly Lys Ile Tyr Arg Val Leu Ala Gly Asn 245 250 255 Pro Ala Lys His Asp Leu Asp Ile Lys Pro Thr Val Ile Ser His Arg 260 265 270

Page 7

Leu His Phe 275 Pro Glu Gly Gly 002806 -084952Ala Ala PCT_SL.txt Leu Thr Ala 285 His Gln Ser 280 Leu Ala Cys His Leu Pro Leu Glu Thr Phe Thr Arg His Arg Gln Pro Arg 290 295 300 Gly Trp Glu Gln Leu Glu Gln Cys Gly Tyr Pro Val Gln Arg Leu Val 305 310 315 320 Ala Leu Tyr Leu Ala Ala Arg Leu Ser Trp Asn Gln Val Asp Gln Val 325 330 335 Ile Arg Asn Ala Leu Ala Ser Pro Gly Ser Gly Gly Asp Leu Gly Glu 340 345 350 Ala Ile Arg Glu Gln Pro Glu Gln Ala Arg Leu Ala Leu Thr Leu Ala 355 360 365 Ala Ala Glu Ser Glu Arg Phe Val Arg Gln Gly Thr Gly Asn Asp Glu 370 375 380 Ala Gly Ala Ala Ser Ala Asp Val Val Ser Leu Thr Cys Pro Val Ala 385 390 395 400 Ala Gly Glu Cys Ala Gly Pro Ala Asp Ser Gly Asp Ala Leu Leu Glu 405 410 415 Arg Asn Tyr Pro Thr Gly Ala Glu Phe Leu Gly Asp Gly Gly Asp Ile 420 425 430 Ser Phe Ser Thr Arg Gly Thr Gln Asn Trp Thr Val Glu Arg Leu Leu 435 440 445 Gln Ala His Arg Gln Leu Glu Glu Arg Gly Tyr Val Phe Val Gly Tyr 450 455 460 His Gly Thr Phe Leu Glu Ala Ala Gln Ser Ile Val Phe Gly Gly Val 465 470 475 480 Arg Ala Arg Ser Gln Asp Leu Asp Ala Ile Trp Arg Gly Phe Tyr Ile 485 490 495 Ala Gly Asp Pro Ala Leu Ala Tyr Gly Tyr Ala Gln Asp Gln Glu Pro 500 505 510 Asp Ala Arg Gly Arg Ile Arg Asn Gly Ala Leu Leu Arg Val Tyr Val 515 520 525

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002806-084952-PCT_SL.txt

Pro Arg Ser Ser Leu Pro Gly 535 Phe Tyr Arg Thr Gly 540 Leu Thr Leu Ala 530 Ala Pro Glu Ala Ala Gly Glu Val Glu Arg Leu Ile Gly His Pro Leu 545 550 555 560 Pro Leu Arg Leu Asp Ala Ile Thr Gly Pro Glu Glu Glu Gly Gly Arg 565 570 575 Leu Glu Thr Ile Leu Gly Trp Pro Leu Ala Glu Arg Thr Val Val Ile 580 585 590 Pro Ser Ala Ile Pro Thr Asp Pro Arg Asn Val Gly Gly Asp Leu Asp 595 600 605 Pro Ser Ser Ile Pro Asp Lys Glu Gln Ala Ile Ser Ala Leu Pro Asp 610 615 620 Tyr Ala Ser Gln Pro Gly Lys Pro Pro Arg Glu Asp Leu Lys

625 630 635 <210> 4 <211> 1296 <212> PRT <213> Clostridium botulinum

<400> 4 Lys Asp Pro Val Asn 15 Gly Met 1 Pro Phe Val Asn 5 Lys Gln Phe Asn Tyr 10 Val Asp Ile Ala Tyr Ile Lys Ile Pro Asn Ala Gly Gln Met Gln Pro 20 25 30 Val Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40 45 Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu 50 55 60 Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser Thr 65 70 75 80 Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys Leu Phe Glu 85 90 95 Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu Thr Ser Ile Val 100 105 110

Page 9

Arg Gly Ile 115 Pro Phe 002806 Trp Gly Gly Ser 120 -084952- PCT_SL.txt Thr Ile Asp Thr 125 Glu Leu Lys Val Ile Asp Thr Asn Cys Ile Asn Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140 Arg Ser Glu Glu Leu Asn Leu Val Ile Ile Gly Pro Ser Ala Asp Ile 145 150 155 160 Ile Gln Phe Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175 Arg Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185 190 Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu 195 200 205 Gly Ala Gly Lys Phe Ala Thr Asp Pro Ala Val Thr Leu Ala His Glu 210 215 220 Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala Ile Asn Pro Asn 225 230 235 240 Arg Val Phe Lys Val Asn Thr Asn Ala Tyr Tyr Glu Met Ser Gly Leu 245 250 255 Glu Val Ser Phe Glu Glu Leu Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270 Phe Ile Asp Ser Leu Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285 Lys Phe Lys Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300 Gly Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys 305 310 315 320 Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys Leu 325 330 335 Lys Phe Asp Lys Leu Tyr Lys Met Leu Thr Glu Ile Tyr Thr Glu Asp 340 345 350 Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg Lys Thr Tyr Leu Asn 355 360 365

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002806-084952-PCT_SL.txt

Phe Asp 370 Lys Ala Val Phe Lys 375 Ile Asn Ile Val Pro 380 Lys Val Asn Tyr Thr Ile Tyr Asp Gly Phe Asn Leu Arg Asn Thr Asn Leu Ala Ala Asn 385 390 395 400 Phe Asn Gly Gln Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415 Lys Asn Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys Val Arg 420 425 430 Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu Asp Lys Gly Tyr Asn Lys 435 440 445 Ala Leu Asn Asp Leu Cys Ile Lys Val Asn Asn Trp Asp Leu Phe Phe 450 455 460 Ser Pro Ser Glu Asp Asn Phe Thr Asn Asp Leu Asn Lys Gly Glu Glu 465 470 475 480 Ile Thr Ser Asp Thr Asn Ile Glu Ala Ala Glu Glu Asn Ile Ser Leu 485 490 495 Asp Leu Ile Gln Gln Tyr Tyr Leu Thr Phe Asn Phe Asp Asn Glu Pro 500 505 510 Glu Asn Ile Ser Ile Glu Asn Leu Ser Ser Asp Ile Ile Gly Gln Leu 515 520 525 Glu Leu Met Pro Asn Ile Glu Arg Phe Pro Asn Gly Lys Lys Tyr Glu 530 535 540 Leu Asp Lys Tyr Thr Met Phe His Tyr Leu Arg Ala Gln Glu Phe Glu 545 550 555 560 His Gly Lys Ser Arg Ile Ala Leu Thr Asn Ser Val Asn Glu Ala Leu 565 570 575 Leu Asn Pro Ser Arg Val Tyr Thr Phe Phe Ser Ser Asp Tyr Val Lys 580 585 590 Lys Val Asn Lys Ala Thr Glu Ala Ala Met Phe Leu Gly Trp Val Glu 595 600 605 Gln Leu Val Tyr Asp Phe Thr Asp Glu Thr Ser Glu Val Ser Thr Thr

610 615 620

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002806-084952-PCT_SL.txt

Asp 625 Lys Ile Ala Asp Ile Thr 630 Ile Ile Ile Pro 635 Tyr Ile Gly Pro Ala 640 Leu Asn Ile Gly Asn Met Leu Tyr Lys Asp Asp Phe Val Gly Ala Leu 645 650 655 Ile Phe Ser Gly Ala Val Ile Leu Leu Glu Phe Ile Pro Glu Ile Ala 660 665 670 Ile Pro Val Leu Gly Thr Phe Ala Leu Val Ser Tyr Ile Ala Asn Lys 675 680 685 Val Leu Thr Val Gln Thr Ile Asp Asn Ala Leu Ser Lys Arg Asn Glu 690 695 700 Lys Trp Asp Glu Val Tyr Lys Tyr Ile Val Thr Asn Trp Leu Ala Lys 705 710 715 720 Val Asn Thr Gln Ile Asp Leu Ile Arg Lys Lys Met Lys Glu Ala Leu 725 730 735 Glu Asn Gln Ala Glu Ala Thr Lys Ala Ile Ile Asn Tyr Gln Tyr Asn 740 745 750 Gln Tyr Thr Glu Glu Glu Lys Asn Asn Ile Asn Phe Asn Ile Asp Asp 755 760 765 Leu Ser Ser Lys Leu Asn Glu Ser Ile Asn Lys Ala Met Ile Asn Ile 770 775 780 Asn Lys Phe Leu Asn Gln Cys Ser Val Ser Tyr Leu Met Asn Ser Met 785 790 795 800 Ile Pro Tyr Gly Val Lys Arg Leu Glu Asp Phe Asp Ala Ser Leu Lys 805 810 815 Asp Ala Leu Leu Lys Tyr Ile Tyr Asp Asn Arg Gly Thr Leu Ile Gly 820 825 830 Gln Val Asp Arg Leu Lys Asp Lys Val Asn Asn Thr Leu Ser Thr Asp 835 840 845 Ile Pro Phe Gln Leu Ser Lys Tyr Val Asp Asn Gln Arg Leu Leu Ser 850 855 860 Thr Phe Thr Glu Tyr Ile Lys Asn Ile Ile Asn Thr Ser Ile Leu Asn

Page 12

865 870 002806-084952- 875 PCT_SL.txt 880 Leu Arg Tyr Glu Ser Asn His Leu Ile Asp Leu Ser Arg Tyr Ala Ser 885 890 895 Lys Ile Asn Ile Gly Ser Lys Val Asn Phe Asp Pro Ile Asp Lys Asn 900 905 910 Gln Ile Gln Leu Phe Asn Leu Glu Ser Ser Lys Ile Glu Val Ile Leu 915 920 925 Lys Asn Ala Ile Val Tyr Asn Ser Met Tyr Glu Asn Phe Ser Thr Ser 930 935 940 Phe Trp Ile Arg Ile Pro Lys Tyr Phe Asn Ser Ile Ser Leu Asn Asn 945 950 955 960 Glu Tyr Thr Ile Ile Asn Cys Met Glu Asn Asn Ser Gly Trp Lys Val 965 970 975 Ser Leu Asn Tyr Gly Glu Ile Ile Trp Thr Leu Gln Asp Thr Gln Glu 980 985 990 Ile Lys Gln Arg Val Val Phe Lys Tyr Ser Gln Met Ile Asn Ile Ser 995 1000 1005 Asp Tyr Ile Asn Arg Trp Ile Phe Val Thr Ile Thr Asn Asn Arg 1010 1015 1020 Leu Asn Asn Ser Lys Ile Tyr Ile Asn Gly Arg Leu Ile Asp Gln 1025 1030 1035 Lys Pro Ile Ser Asn Leu Gly Asn Ile His Ala Ser Asn Asn Ile 1040 1045 1050 Met Phe Lys Leu Asp Gly Cys Arg Asp Thr His Arg Tyr Ile Trp 1055 1060 1065 Ile Lys Tyr Phe Asn Leu Phe Asp Lys Glu Leu Asn Glu Lys Glu 1070 1075 1080 Ile Lys Asp Leu Tyr Asp Asn Gln Ser Asn Ser Gly Ile Leu Lys 1085 1090 1095 Asp Phe Trp Gly Asp Tyr Leu Gln Tyr Asp Lys Pro Tyr Tyr Met 1100 1105 1110

Page 13

002806-084952-PCT_SL.txt

Leu Asn 1115 Leu Tyr Asp Pro Asn 1120 Lys Tyr Val Asp Val 1125 Asn Asn Val Gly Ile Arg Gly Tyr Met Tyr Leu Lys Gly Pro Arg Gly Ser Val 1130 1135 1140 Met Thr Thr Asn Ile Tyr Leu Asn Ser Ser Leu Tyr Arg Gly Thr 1145 1150 1155 Lys Phe Ile Ile Lys Lys Tyr Ala Ser Gly Asn Lys Asp Asn Ile 1160 1165 1170 Val Arg Asn Asn Asp Arg Val Tyr Ile Asn Val Val Val Lys Asn 1175 1180 1185 Lys Glu Tyr Arg Leu Ala Thr Asn Ala Ser Gln Ala Gly Val Glu 1190 1195 1200 Lys Ile Leu Ser Ala Leu Glu Ile Pro Asp Val Gly Asn Leu Ser 1205 1210 1215 Gln Val Val Val Met Lys Ser Lys Asn Asp Gln Gly Ile Thr Asn 1220 1225 1230 Lys Cys Lys Met Asn Leu Gln Asp Asn Asn Gly Asn Asp Ile Gly 1235 1240 1245 Phe Ile Gly Phe His Gln Phe Asn Asn Ile Ala Lys Leu Val Ala 1250 1255 1260 Ser Asn Trp Tyr Asn Arg Gln Ile Glu Arg Ser Ser Arg Thr Leu 1265 1270 1275 Gly Cys Ser Trp Glu Phe Ile Pro Val Asp Asp Gly Trp Gly Glu 1280 1285 1290 Arg Pro Leu

1295 <210> 5 <211> 1315 <212> PRT <213> Clostridium tetani <400> 5

Met Pro Ile Thr Ile Asn Asn Phe Arg Tyr Ser Asp Pro Val Asn Asn 1 5 10 15 Asp Thr Ile Ile Met Met Glu Pro Pro Tyr Cys Lys Gly Leu Asp Ile

Page 14

20 002806 25 -084952- PCT SL.txt 30 Tyr Tyr Lys Ala Phe Lys Ile Thr Asp Arg Ile Trp Ile Val Pro Glu 35 40 45 Arg Tyr Glu Phe Gly Thr Lys Pro Glu Asp Phe Asn Pro Pro Ser Ser 50 55 60 Leu Ile Glu Gly Ala Ser Glu Tyr Tyr Asp Pro Asn Tyr Leu Arg Thr 65 70 75 80 Asp Ser Asp Lys Asp Arg Phe Leu Gln Thr Met Val Lys Leu Phe Asn 85 90 95 Arg Ile Lys Asn Asn Val Ala Gly Glu Ala Leu Leu Asp Lys Ile Ile 100 105 110 Asn Ala Ile Pro Tyr Leu Gly Asn Ser Tyr Ser Leu Leu Asp Lys Phe 115 120 125 Asp Thr Asn Ser Asn Ser Val Ser Phe Asn Leu Ser Glu Gln Asp Pro 130 135 140 Ser Gly Ala Thr Thr Lys Ser Ala Met Leu Thr Asn Leu Ile Ile Phe 145 150 155 160 Gly Pro Gly Pro Val Leu Asn Lys Asn Glu Val Arg Gly Ile Val Leu 165 170 175 Arg Val Asp Asn Lys Asn Tyr Phe Pro Cys Arg Asp Gly Phe Gly Ser 180 185 190 Ile Met Gln Met Ala Phe Cys Pro Glu Tyr Ile Pro Thr Phe Asp Asn 195 200 205 Val Ile Glu Asn Ile Thr Ser Leu Thr Ile Gly Lys Ser Lys Tyr Phe 210 215 220 Gln Asp Pro Ala Leu Leu Leu Met His Glu Leu Ile His Val Leu His 225 230 235 240 Gly Leu Tyr Gly Met Gln Val Ser Ser His Glu Ile Ile Pro Ser Lys 245 250 255 Gln Glu Ile Tyr Met Gln His Thr Tyr Pro Ile Ser Ala Glu Glu Leu 260 265 270

Page 15

Phe Thr 002806 Phe Gly Gly Gln Asp Ala Asn -084952- PCT_SL.txt Leu Ile Ser Ile Asp 285 Ile Lys 275 280 Asn Asp Leu Tyr Glu Lys Thr Leu Asn Asp Tyr Lys Ala Ile Ala Asn 290 295 300 Lys Leu Ser Gln Val Thr Ser Cys Asn Asp Pro Asn Ile Asp Ile Asp 305 310 315 320 Ser Tyr Lys Gln Ile Tyr Gln Gln Lys Tyr Gln Phe Asp Lys Asp Ser 325 330 335 Asn Gly Gln Tyr Ile Val Asn Glu Asp Lys Phe Gln Ile Leu Tyr Asn 340 345 350 Ser Ile Met Tyr Gly Phe Thr Glu Ile Glu Leu Gly Lys Lys Phe Asn 355 360 365 Ile Lys Thr Arg Leu Ser Tyr Phe Ser Met Asn His Asp Pro Val Lys 370 375 380 Ile Pro Asn Leu Leu Asp Asp Thr Ile Tyr Asn Asp Thr Glu Gly Phe 385 390 395 400 Asn Ile Glu Ser Lys Asp Leu Lys Ser Glu Tyr Lys Gly Gln Asn Met 405 410 415 Arg Val Asn Thr Asn Ala Phe Arg Asn Val Asp Gly Ser Gly Leu Val 420 425 430 Ser Lys Leu Ile Gly Leu Cys Lys Lys Ile Ile Pro Pro Thr Asn Ile 435 440 445 Arg Glu Asn Leu Tyr Asn Arg Thr Ala Ser Leu Thr Asp Leu Gly Gly 450 455 460 Glu Leu Cys Ile Lys Ile Lys Asn Glu Asp Leu Thr Phe Ile Ala Glu 465 470 475 480 Lys Asn Ser Phe Ser Glu Glu Pro Phe Gln Asp Glu Thr Val Ser Tyr 485 490 495 Asn Thr Lys Asn Lys Pro Leu Asn Phe Asn Tyr Ser Leu Asp Lys Ile 500 505 510 Ile Leu Asp Tyr Asn Leu Gln Ser Lys Ile Thr Leu Pro Asn Asp Arg 515 520 525

Page 16

002806-084952-PCT_SL.txt

Thr Thr 530 Pro Val Thr Lys Gly 535 Ile Pro Tyr Ala Pro 540 Lys Tyr Lys Ser Asn Ala Ala Ser Thr Ile Glu Ile His Asn Ile Asp Asp Asn Thr Ile 545 550 555 560 Tyr Gln Tyr Leu Tyr Ala Gln Lys Ser Pro Thr Thr Leu Gln Arg Ile 565 570 575 Thr Met Thr Asn Ser Val Asp Asp Ala Leu Ile Asn Ser Thr Lys Ile 580 585 590 Tyr Ser Tyr Phe Pro Ser Val Ile Ser Lys Val Asn Gln Gly Ala Gln 595 600 605 Gly Ile Leu Phe Leu Gln Trp Val Arg Asp Ile Ile Asp Asp Phe Thr 610 615 620 Asn Glu Ser Ser Gln Lys Thr Thr Ile Asp Lys Ile Ser Asp Val Ser 625 630 635 640 Thr Ile Val Pro Tyr Ile Gly Pro Ala Leu Asn Ile Val Lys Gln Gly 645 650 655 Tyr Glu Gly Asn Phe Ile Gly Ala Leu Glu Thr Thr Gly Val Val Leu 660 665 670 Leu Leu Glu Tyr Ile Pro Glu Ile Thr Leu Pro Val Ile Ala Ala Leu 675 680 685 Ser Ile Ala Glu Ser Ser Thr Gln Lys Glu Lys Ile Ile Lys Thr Ile 690 695 700 Asp Asn Phe Leu Glu Lys Arg Tyr Glu Lys Trp Ile Glu Val Tyr Lys 705 710 715 720 Leu Ile Lys Ala Lys Trp Leu Gly Thr Val Asn Thr Gln Phe Gln Lys 725 730 735 Arg Ser Tyr Gln Met Tyr Arg Ser Leu Glu Tyr Gln Val Asp Ala Ile 740 745 750 Lys Lys Ile Ile Asp Tyr Glu Tyr Lys Ile Tyr Ser Gly Pro Asp Lys 755 760 765 Glu Gln Ile Ala Asp Glu Ile Asn Asn Leu Lys Asn Lys Leu Glu Glu

770 775 780

Page 17

002806-084952-PCT_SL.txt

Lys Ala 785 Asn Lys Ala Met 790 Ile Asn Ile Asn Ile 795 Phe Met Arg Glu Ser 800 Ser Arg Ser Phe Leu Val Asn Gln Met Ile Asn Glu Ala Lys Lys Gln 805 810 815 Leu Leu Glu Phe Asp Thr Gln Ser Lys Asn Ile Leu Met Gln Tyr Ile 820 825 830 Lys Ala Asn Ser Lys Phe Ile Gly Ile Thr Glu Leu Lys Lys Leu Glu 835 840 845 Ser Lys Ile Asn Lys Val Phe Ser Thr Pro Ile Pro Phe Ser Tyr Ser 850 855 860 Lys Asn Leu Asp Cys Trp Val Asp Asn Glu Glu Asp Ile Asp Val Ile 865 870 875 880 Leu Lys Lys Ser Thr Ile Leu Asn Leu Asp Ile Asn Asn Asp Ile Ile 885 890 895 Ser Asp Ile Ser Gly Phe Asn Ser Ser Val Ile Thr Tyr Pro Asp Ala 900 905 910 Gln Leu Val Pro Gly Ile Asn Gly Lys Ala Ile His Leu Val Asn Asn 915 920 925 Glu Ser Ser Glu Val Ile Val His Lys Ala Met Asp Ile Glu Tyr Asn 930 935 940 Asp Met Phe Asn Asn Phe Thr Val Ser Phe Trp Leu Arg Val Pro Lys 945 950 955 960 Val Ser Ala Ser His Leu Glu Gln Tyr Gly Thr Asn Glu Tyr Ser Ile 965 970 975 Ile Ser Ser Met Lys Lys Tyr Ser Leu Ser Ile Gly Ser Gly Trp Ser 980 985 990

Val Ser Leu Lys Gly Asn Asn Leu Ile Trp Thr Leu Lys Asp Ser Ala

995 1000 1005 Glu Val Arg Gln Ile Thr Phe Ser Asp Leu Ser Asp Lys Phe 1010 1015 1020

Asn Ala Tyr Leu Ala Asn Lys Trp Val Phe Ile Thr Ile Thr Asn Page 18

1025 1030 002806-084952-PCT SL. 1035 txt Asp Arg Leu Ser Ser Ala Asn Leu Tyr Ile Asn Gly Val Leu Met 1040 1045 1050 Lys Asn Ala Glu Ile Thr Gly Leu Gly Ala Ile Arg Glu Asp Asn 1055 1060 1065 Asn Ile Thr Leu Lys Leu Asp Arg Cys Asn Asn Asn Asn Gln Tyr 1070 1075 1080 Val Ser Ile Asp Lys Phe Arg Ile Phe Cys Lys Ala Leu Asn Pro 1085 1090 1095 Lys Glu Ile Glu Lys Leu Tyr Thr Ser Tyr Leu Ser Ile Thr Phe 1100 1105 1110 Leu Arg Asp Phe Trp Gly Asn Pro Leu Arg Tyr Asp Thr Glu Tyr 1115 1120 1125 Tyr Leu Ile Pro Val Ala Ser Ser Ser Lys Asp Val Gln Leu Lys 1130 1135 1140 Asn Ile Thr Asp Tyr Met Tyr Leu Thr Asn Ala Pro Ser Tyr Thr 1145 1150 1155 Asn Gly Lys Leu Asn Ile Tyr Tyr Arg Arg Leu Tyr Ser Gly Leu 1160 1165 1170 Lys Phe Ile Ile Lys Arg Tyr Thr Pro Asn Asn Glu Ile Asp Ser 1175 1180 1185 Phe Val Lys Ser Gly Asp Phe Ile Lys Leu Tyr Val Ser Tyr Asn 1190 1195 1200 Asn Asn Glu His Ile Val Gly Tyr Pro Lys Asp Gly Asn Ala Phe 1205 1210 1215 Asn Asn Leu Asp Arg Ile Leu Arg Val Gly Tyr Asn Ala Pro Gly 1220 1225 1230 Ile Pro Leu Tyr Lys Lys Met Glu Ala Val Lys Leu Arg Asp Leu 1235 1240 1245 Lys Thr Tyr Ser Val Gln Leu Lys Leu Tyr Asp Asp Lys Asn Ala 1250 1255 1260

Page 19

002806-084952-PCT_SL.txt

Ser Leu 1265 Gly Leu Val Gly Ile 1270 Arg Asn Gly Gln Ile 1275 Gly Asn Asp Pro Asn Arg Asp Ile Leu Ile Ala Ser Asn Trp Tyr Phe Asn His 1280 1285 1290 Leu Lys Asp Lys Thr Leu Thr Cys Asp Trp Tyr Phe Val Pro Thr 1295 1300 1305 Asp Glu Gly Trp Thr Asn Asp 1310 1315

<210> 6 <211> 800 <212> PRT <213> Bacillus anthracis

<400> 6 Met Thr 1 Arg Asn Lys 5 Phe Ile Pro Asn Lys 10 Phe Ser Ile Ile Ser 15 Phe Ser Val Leu Leu Phe Ala Ile Ser Ser Ser Gln Ala Ile Glu Val Asn 20 25 30 Ala Met Asn Glu His Tyr Thr Glu Ser Asp Ile Lys Arg Asn His Lys 35 40 45 Thr Glu Lys Asn Lys Thr Glu Lys Glu Lys Phe Lys Asp Ser Ile Asn 50 55 60 Asn Leu Val Lys Thr Glu Phe Thr Asn Glu Thr Leu Asp Lys Ile Gln 65 70 75 80 Gln Thr Gln Asp Leu Leu Lys Lys Ile Pro Lys Asp Val Leu Glu Ile 85 90 95 Tyr Ser Glu Leu Gly Gly Glu Ile Tyr Phe Thr Asp Ile Asp Leu Val 100 105 110 Glu His Lys Glu Leu Gln Asp Leu Ser Glu Glu Glu Lys Asn Ser Met 115 120 125 Asn Ser Arg Gly Glu Lys Val Pro Phe Ala Ser Arg Phe Val Phe Glu 130 135 140 Lys Lys Arg Glu Thr Pro Lys Leu Ile Ile Asn Ile Lys Asp Tyr Ala 145 150 155 160 Ile Asn Ser Glu Gln Ser Lys Glu Val Tyr Tyr Glu Ile Gly Lys Gly Page 20

165 002806 -084952- 170 PCT_SL.txt 175 Ile Ser Leu Asp Ile Ile Ser Lys Asp Lys Ser Leu Asp Pro Glu Phe 180 185 190 Leu Asn Leu Ile Lys Ser Leu Ser Asp Asp Ser Asp Ser Ser Asp Leu 195 200 205 Leu Phe Ser Gln Lys Phe Lys Glu Lys Leu Glu Leu Asn Asn Lys Ser 210 215 220 Ile Asp Ile Asn Phe Ile Lys Glu Asn Leu Thr Glu Phe Gln His Ala 225 230 235 240 Phe Ser Leu Ala Phe Ser Tyr Tyr Phe Ala Pro Asp His Arg Thr Val 245 250 255 Leu Glu Leu Tyr Ala Pro Asp Met Phe Glu Tyr Met Asn Lys Leu Glu 260 265 270 Lys Gly Gly Phe Glu Lys Ile Ser Glu Ser Leu Lys Lys Glu Gly Val 275 280 285 Glu Lys Asp Arg Ile Asp Val Leu Lys Gly Glu Lys Ala Leu Lys Ala 290 295 300 Ser Gly Leu Val Pro Glu His Ala Asp Ala Phe Lys Lys Ile Ala Arg 305 310 315 320 Glu Leu Asn Thr Tyr Ile Leu Phe Arg Pro Val Asn Lys Leu Ala Thr 325 330 335 Asn Leu Ile Lys Ser Gly Val Ala Thr Lys Gly Leu Asn Val His Gly 340 345 350 Lys Ser Ser Asp Trp Gly Pro Val Ala Gly Tyr Ile Pro Phe Asp Gln 355 360 365 Asp Leu Ser Lys Lys His Gly Gln Gln Leu Ala Val Glu Lys Gly Asn 370 375 380 Leu Glu Asn Lys Lys Ser Ile Thr Glu His Glu Gly Glu Ile Gly Lys 385 390 395 400 Ile Pro Leu Lys Leu Asp His Leu Arg Ile Glu Glu Leu Lys Glu Asn 405 410 415

Page 21

Gly Ile Ile Leu 420 Lys Gly Lys 002806 Lys Glu 425 -084952Ile Asp PCT_SL.txt Asn Gly Lys 430 Lys Tyr Tyr Leu Leu Glu Ser Asn Asn Gln Val Tyr Glu Phe Arg Ile Ser Asp 435 440 445 Glu Asn Asn Glu Val Gln Tyr Lys Thr Lys Glu Gly Lys Ile Thr Val 450 455 460 Leu Gly Glu Lys Phe Asn Trp Arg Asn Ile Glu Val Met Ala Lys Asn 465 470 475 480 Val Glu Gly Val Leu Lys Pro Leu Thr Ala Asp Tyr Asp Leu Phe Ala 485 490 495 Leu Ala Pro Ser Leu Thr Glu Ile Lys Lys Gln Ile Pro Gln Lys Glu 500 505 510 Trp Asp Lys Val Val Asn Thr Pro Asn Ser Leu Glu Lys Gln Lys Gly 515 520 525 Val Thr Asn Leu Leu Ile Lys Tyr Gly Ile Glu Arg Lys Pro Asp Ser 530 535 540 Thr Lys Gly Thr Leu Ser Asn Trp Gln Lys Gln Met Leu Asp Arg Leu 545 550 555 560 Asn Glu Ala Val Lys Tyr Thr Gly Tyr Thr Gly Gly Asp Val Val Asn 565 570 575 His Gly Thr Glu Gln Asp Asn Glu Glu Phe Pro Glu Lys Asp Asn Glu 580 585 590 Ile Phe Ile Ile Asn Pro Glu Gly Glu Phe Ile Leu Thr Lys Asn Trp 595 600 605 Glu Met Thr Gly Arg Phe Ile Glu Lys Asn Ile Thr Gly Lys Asp Tyr 610 615 620 Leu Tyr Tyr Phe Asn Arg Ser Tyr Asn Lys Ile Ala Pro Gly Asn Lys 625 630 635 640 Ala Tyr Ile Glu Trp Thr Asp Pro Ile Thr Lys Ala Lys Ile Asn Thr 645 650 655 Ile Pro Thr Ser Ala Glu Phe Ile Lys Asn Leu Ser Ser Ile Arg Arg 660 665 670

Page 22

002806-084952-PCT_SL.txt

Ser Ser Asn 675 Val Gly Val Tyr Lys Asp 680 Ser Gly Asp Lys 685 Asp Glu Phe Ala Lys Lys Glu Ser Val Lys Lys Ile Ala Gly Tyr Leu Ser Asp Tyr 690 695 700 Tyr Asn Ser Ala Asn His Ile Phe Ser Gln Glu Lys Lys Arg Lys Ile 705 710 715 720 Ser Ile Phe Arg Gly Ile Gln Ala Tyr Asn Glu Ile Glu Asn Val Leu 725 730 735 Lys Ser Lys Gln Ile Ala Pro Glu Tyr Lys Asn Tyr Phe Gln Tyr Leu 740 745 750 Lys Glu Arg Ile Thr Asn Gln Val Gln Leu Leu Leu Thr His Gln Lys 755 760 765 Ser Asn Ile Glu Phe Lys Leu Leu Tyr Lys Gln Leu Asn Phe Thr Glu 770 775 780 Asn Glu Thr Asp Asn Phe Glu Val Phe Gln Lys Ile Ile Asp Glu Lys 785 790 795 800

<210> 7 <211> 809 <212> PRT <213> Bacillus anthracis <400> 7

Met Asn Ile Lys Lys Glu Phe Ile Lys Val Ile Ser Met Ser Cys Le u 1 5 10 15 Val Thr Ala Ile Thr Leu Ser Gly Pro Val Phe Ile Pro Leu Val Gl n 20 25 30 Gly Ala Gly Gly His Gly Asp Val Gly Met His Val Lys Glu Lys Gl u 35 40 45 Lys Asn Lys Asp Glu Asn Lys Arg Lys Asp Glu Glu Arg Asn Lys Th r 50 55 60 Gln Glu Glu His Leu Lys Glu Ile Met Lys His Ile Val Lys Ile Gl u 65 70 75 80 Val Lys Gly Glu Glu Ala Val Lys Lys Glu Ala Ala Glu Lys Leu Le u 85 90 95

Page 23

Glu Lys Val Pro 100 Ser Asp Val 002806-084952Leu Glu Met Tyr 105 PCT_SL.txt Lys Ala Ile 110 Gly Gly Lys Ile Tyr Ile Val Asp Gly Asp Ile Thr Lys His Ile Ser Leu Glu 115 120 125 Ala Leu Ser Glu Asp Lys Lys Lys Ile Lys Asp Ile Tyr Gly Lys Asp 130 135 140 Ala Leu Leu His Glu His Tyr Val Tyr Ala Lys Glu Gly Tyr Glu Pro 145 150 155 160 Val Leu Val Ile Gln Ser Ser Glu Asp Tyr Val Glu Asn Thr Glu Lys 165 170 175 Ala Leu Asn Val Tyr Tyr Glu Ile Gly Lys Ile Leu Ser Arg Asp Ile 180 185 190 Leu Ser Lys Ile Asn Gln Pro Tyr Gln Lys Phe Leu Asp Val Leu Asn 195 200 205 Thr Ile Lys Asn Ala Ser Asp Ser Asp Gly Gln Asp Leu Leu Phe Thr 210 215 220 Asn Gln Leu Lys Glu His Pro Thr Asp Phe Ser Val Glu Phe Leu Glu 225 230 235 240 Gln Asn Ser Asn Glu Val Gln Glu Val Phe Ala Lys Ala Phe Ala Tyr 245 250 255 Tyr Ile Glu Pro Gln His Arg Asp Val Leu Gln Leu Tyr Ala Pro Glu 260 265 270 Ala Phe Asn Tyr Met Asp Lys Phe Asn Glu Gln Glu Ile Asn Leu Ser 275 280 285 Leu Glu Glu Leu Lys Asp Gln Arg Met Leu Ser Arg Tyr Glu Lys Trp 290 295 300 Glu Lys Ile Lys Gln His Tyr Gln His Trp Ser Asp Ser Leu Ser Glu 305 310 315 320 Glu Gly Arg Gly Leu Leu Lys Lys Leu Gln Ile Pro Ile Glu Pro Lys 325 330 335 Lys Asp Asp Ile Ile His Ser Leu Ser Gln Glu Glu Lys Glu Leu Leu 340 345 350

Page 24

002806-084952-PCT_SL.txt

Lys Arg Ile 355 Gln Ile Asp Ser Ser Asp 360 Phe Leu Ser Thr Glu Glu 365 Lys Glu Phe Leu Lys Lys Leu Gln Ile Asp Ile Arg Asp Ser Leu Ser Glu 370 375 380 Glu Glu Lys Glu Leu Leu Asn Arg Ile Gln Val Asp Ser Ser Asn Pro 385 390 395 400 Leu Ser Glu Lys Glu Lys Glu Phe Leu Lys Lys Leu Lys Leu Asp Ile 405 410 415 Gln Pro Tyr Asp Ile Asn Gln Arg Leu Gln Asp Thr Gly Gly Leu Ile 420 425 430 Asp Ser Pro Ser Ile Asn Leu Asp Val Arg Lys Gln Tyr Lys Arg Asp 435 440 445 Ile Gln Asn Ile Asp Ala Leu Leu His Gln Ser Ile Gly Ser Thr Leu 450 455 460 Tyr Asn Lys Ile Tyr Leu Tyr Glu Asn Met Asn Ile Asn Asn Leu Thr 465 470 475 480 Ala Thr Leu Gly Ala Asp Leu Val Asp Ser Thr Asp Asn Thr Lys Ile 485 490 495 Asn Arg Gly Ile Phe Asn Glu Phe Lys Lys Asn Phe Lys Tyr Ser Ile 500 505 510 Ser Ser Asn Tyr Met Ile Val Asp Ile Asn Glu Arg Pro Ala Leu Asp 515 520 525 Asn Glu Arg Leu Lys Trp Arg Ile Gln Leu Ser Pro Asp Thr Arg Ala 530 535 540 Gly Tyr Leu Glu Asn Gly Lys Leu Ile Leu Gln Arg Asn Ile Gly Leu 545 550 555 560 Glu Ile Lys Asp Val Gln Ile Ile Lys Gln Ser Glu Lys Glu Tyr Ile 565 570 575 Arg Ile Asp Ala Lys Val Val Pro Lys Ser Lys Ile Asp Thr Lys Ile 580 585 590 Gln Glu Ala Gln Leu Asn Ile Asn Gln Glu Trp Asn Lys Ala Leu Gly 595 600 605

Page 25

002806-084952-PCT_SL.txt

Leu Pro 610 Lys Tyr Thr Lys Leu 615 Ile Thr Phe Asn Val 620 His Asn Arg Tyr Ala Ser Asn Ile Val Glu Ser Ala Tyr Leu Ile Leu Asn Glu Trp Lys 625 630 635 640 Asn Asn Ile Gln Ser Asp Leu Ile Lys Lys Val Thr Asn Tyr Leu Val 645 650 655 Asp Gly Asn Gly Arg Phe Val Phe Thr Asp Ile Thr Leu Pro Asn Ile 660 665 670 Ala Glu Gln Tyr Thr His Gln Asp Glu Ile Tyr Glu Gln Val His Ser 675 680 685 Lys Gly Leu Tyr Val Pro Glu Ser Arg Ser Ile Leu Leu His Gly Pro 690 695 700 Ser Lys Gly Val Glu Leu Arg Asn Asp Ser Glu Gly Phe Ile His Glu 705 710 715 720 Phe Gly His Ala Val Asp Asp Tyr Ala Gly Tyr Leu Leu Asp Lys Asn 725 730 735 Gln Ser Asp Leu Val Thr Asn Ser Lys Lys Phe Ile Asp Ile Phe Lys 740 745 750 Glu Glu Gly Ser Asn Leu Thr Ser Tyr Gly Arg Thr Asn Glu Ala Glu 755 760 765 Phe Phe Ala Glu Ala Phe Arg Leu Met His Ser Thr Asp His Ala Glu 770 775 780 Arg Leu Lys Val Gln Lys Asn Ala Pro Lys Thr Phe Gln Phe Ile Asn 785 790 795 800 Asp Gln Ile Lys Phe Ile Ile Asn Ser

805 <210> 8 <211> 71 <212> PRT <213> Conus magus <400> 8

Met Lys Leu Thr Cys Val Val Ile Val Ala Val Leu Leu Leu Thr Ala 1 5 10 15

Page 26

002806-084952-PCT_SL.txt

Cys Gln Leu Ile Thr Ala Asp Asp Ser Arg Gly Thr Gln Lys His Arg 20 25 30 Ala Leu Arg Ser Thr Thr Lys Leu Ser Met Ser Thr Arg Cys Lys Gly 35 40 45 Lys Gly Ala Lys Cys Ser Arg Leu Met Tyr Asp Cys Cys Thr Gly Ser 50 55 60 Cys Arg Ser Gly Lys Cys Gly

65 70 <210> 9 <211> 34 <212> PRT <213> Conus geographus <400> 9

Ala Cys Ser Gly Arg Gly Ser Arg Cys Pro Pro Gln Cys Cys Met Gly 1 5 10 15

Leu Arg Cys Gly Arg Gly Asn Pro Gln Lys Cys Ile Gly Ala His Glu 20 25 30

Asp Val <210> 10 <211> 31 <212> PRT <213> Conus eburneus <400> 10

Leu Asn Lys Arg Cys Ala Gly Ile Gly Ser Phe Cys Gly Leu Pro Gly 1 5 10 15

Leu Val Asp Cys Cys Ser Gly Arg Cys Phe Ile Val Cys Leu Pro 20 25 30 <210> 11 <211> 293 <212> PRT <213> Shigella dysenteriae <400> 11

Lys Glu Phe Thr Leu Asp Phe Ser Thr Ala Lys Thr Tyr Val Asp Ser 1 5 10 15

Leu Asn Val Ile Arg Ser Ala Ile Gly Thr Pro Leu Gln Thr Ile Ser 20 25 30

Page 27

Ser Gly Gly 35 Thr Ser Leu Leu 002806 -084952Asp Ser PCT_SL.txt Gly Thr Gly 45 Asp Asn Met 40 Ile Leu Phe Ala Val Asp Val Arg Gly Ile Asp Pro Glu Glu Gly Arg Phe 50 55 60 Asn Asn Leu Arg Leu Ile Val Glu Arg Asn Asn Leu Tyr Val Thr Gly 65 70 75 80 Phe Val Asn Arg Thr Asn Asn Val Phe Tyr Arg Phe Ala Asp Phe Ser 85 90 95 His Val Thr Phe Pro Gly Thr Thr Ala Val Thr Leu Ser Gly Asp Ser 100 105 110 Ser Tyr Thr Thr Leu Gln Arg Val Ala Gly Ile Ser Arg Thr Gly Met 115 120 125 Gln Ile Asn Arg His Ser Leu Thr Thr Ser Tyr Leu Asp Leu Met Ser 130 135 140 His Ser Gly Thr Ser Leu Thr Gln Ser Val Ala Arg Ala Met Leu Arg 145 150 155 160 Phe Val Thr Val Thr Ala Glu Ala Leu Arg Phe Arg Gln Ile Gln Arg 165 170 175 Gly Phe Arg Thr Thr Leu Asp Asp Leu Ser Gly Arg Ser Tyr Val Met 180 185 190 Thr Ala Glu Asp Val Asp Leu Thr Leu Asn Trp Gly Arg Leu Ser Ser 195 200 205 Val Leu Pro Asp Tyr His Gly Gln Asp Ser Val Arg Val Gly Arg Ile 210 215 220 Ser Phe Gly Ser Ile Asn Ala Ile Leu Gly Ser Val Ala Leu Ile Leu 225 230 235 240 Asn Cys His His His Ala Ser Arg Val Ala Arg Met Ala Ser Asp Glu 245 250 255 Phe Pro Ser Met Cys Pro Ala Asp Gly Arg Val Arg Gly Ile Thr His 260 265 270 Asn Lys Ile Leu Trp Asp Ser Ser Thr Leu Gly Ala Ile Leu Met Arg 275 280 285

Page 28

002806-084952-PCT_SL.txt

Arg Thr Ile Ser Ser 290 <210> 12 <211> 69 <212> PRT <213> Shigella dysenteriae <400> 12

Thr 1 Pro Asp Cys Val 5 Thr Gly Lys Val Glu 10 Tyr Thr Lys Tyr Asn 15 Asp Asp Asp Thr Phe Thr Val Lys Val Gly Asp Lys Glu Leu Phe Thr Asn 20 25 30 Arg Trp Asn Leu Gln Ser Leu Leu Leu Ser Ala Gln Ile Thr Gly Met 35 40 45 Thr Val Thr Ile Lys Thr Asn Ala Cys His Asn Gly Gly Gly Phe Ser 50 55 60 Glu Val Ile Phe Arg

<210> 13 <211> 613 <212> PRT <213> Pseudomonas aeruginosa <400> 13

Ala Glu Glu Ala Phe Asp Leu Trp Asn Glu Cys Ala Lys Ala Cys Val 1 5 10 15 Leu Asp Leu Lys Asp Gly Val Arg Ser Ser Arg Met Ser Val Asp Pro 20 25 30 Ala Ile Ala Asp Thr Asn Gly Gln Gly Val Leu His Tyr Ser Met Val 35 40 45 Leu Glu Gly Gly Asn Asp Ala Leu Lys Leu Ala Ile Asp Asn Ala Leu 50 55 60 Ser Ile Thr Ser Asp Gly Leu Thr Ile Arg Leu Glu Gly Gly Val Glu 65 70 75 80 Pro Asn Lys Pro Val Arg Tyr Ser Tyr Thr Arg Gln Ala Arg Gly Ser 85 90 95 Trp Ser Leu Asn Trp Leu Val Pro Ile Gly His Glu Lys Pro Ser Asn 100 105 110

Page 29

002806-084952-PCT_SL.txt

Ile Lys Val 115 Phe Ile His Glu Leu Asn Ala Gly Asn 120 Gln 125 Leu Ser His Met Ser Pro Ile Tyr Thr Ile Glu Met Gly Asp Glu Leu Leu Ala Lys 130 135 140 Leu Ala Arg Asp Ala Thr Phe Phe Val Arg Ala His Glu Ser Asn Glu 145 150 155 160 Met Gln Pro Thr Leu Ala Ile Ser His Ala Gly Val Ser Val Val Met 165 170 175 Ala Gln Ala Gln Pro Arg Arg Glu Lys Arg Trp Ser Glu Trp Ala Ser 180 185 190 Gly Lys Val Leu Cys Leu Leu Asp Pro Leu Asp Gly Val Tyr Asn Tyr 195 200 205 Leu Ala Gln Gln Arg Cys Asn Leu Asp Asp Thr Trp Glu Gly Lys Ile 210 215 220 Tyr Arg Val Leu Ala Gly Asn Pro Ala Lys His Asp Leu Asp Ile Lys 225 230 235 240 Pro Thr Val Ile Ser His Arg Leu His Phe Pro Glu Gly Gly Ser Leu 245 250 255 Ala Ala Leu Thr Ala His Gln Ala Cys His Leu Pro Leu Glu Thr Phe 260 265 270 Thr Arg His Arg Gln Pro Arg Gly Trp Glu Gln Leu Glu Gln Cys Gly 275 280 285 Tyr Pro Val Gln Arg Leu Val Ala Leu Tyr Leu Ala Ala Arg Leu Ser 290 295 300 Trp Asn Gln Val Asp Gln Val Ile Arg Asn Ala Leu Ala Ser Pro Gly 305 310 315 320 Ser Gly Gly Asp Leu Gly Glu Ala Ile Arg Glu Gln Pro Glu Gln Ala 325 330 335 Arg Leu Ala Leu Thr Leu Ala Ala Ala Glu Ser Glu Arg Phe Val Arg 340 345 350 Gln Gly Thr Gly Asn Asp Glu Ala Gly Ala Ala Asn Ala Asp Val Val

Page 30

00 2806 -084 952- PCT_ SL.t xt 355 360 365 Ser Leu Thr Cys Pro Val Ala Ala Gly Glu Cys Ala Gly Pro Ala Asp 370 375 380 Ser Gly Asp Ala Leu Leu Glu Arg Asn Tyr Pro Thr Gly Ala Glu Phe 385 390 395 400 Leu Gly Asp Gly Gly Asp Val Ser Phe Ser Thr Arg Gly Thr Gln Asn 405 410 415 Trp Thr Val Glu Arg Leu Leu Gln Ala His Arg Gln Leu Glu Glu Arg 420 425 430 Gly Tyr Val Phe Val Gly Tyr His Gly Thr Phe Leu Glu Ala Ala Gln 435 440 445 Ser Ile Val Phe Gly Gly Val Arg Ala Arg Ser Gln Asp Leu Asp Ala 450 455 460 Ile Trp Arg Gly Phe Tyr Ile Ala Gly Asp Pro Ala Leu Ala Tyr Gly 465 470 475 480 Tyr Ala Gln Asp Gln Glu Pro Asp Ala Arg Gly Arg Ile Arg Asn Gly 485 490 495 Ala Leu Leu Arg Val Tyr Val Pro Arg Ser Ser Leu Pro Gly Phe Tyr 500 505 510 Arg Thr Ser Leu Thr Leu Ala Ala Pro Glu Ala Ala Gly Glu Val Glu 515 520 525 Arg Leu Ile Gly His Pro Leu Pro Leu Arg Leu Asp Ala Ile Thr Gly 530 535 540 Pro Glu Glu Glu Gly Gly Arg Leu Glu Thr Ile Leu Gly Trp Pro Leu 545 550 555 560 Ala Glu Arg Thr Val Val Ile Pro Ser Ala Ile Pro Thr Asp Pro Arg 565 570 575 Asn Val Gly Gly Asp Leu Asp Pro Ser Ser Ile Pro Asp Lys Glu Gln 580 585 590 Ala Ile Ser Ala Leu Pro Asp Tyr Ala Ser Gln Pro Gly Lys Pro Pro 595 600 605

Page 31

002806-084952-PCT_SL.txt

Arg Glu Asp Leu Lys 610 <210> 14 <211> 194 <212> PRT <213> Vibrio cholerae <400> 14

Asn 1 Asp Asp Lys Leu 5 Tyr Arg Ala Asp Ser Arg Pro Pro Asp Glu Ile 10 15 Lys Gln Ser Gly Gly Leu Met Pro Arg Gly Gln Ser Glu Tyr Phe Asp 20 25 30 Arg Gly Thr Gln Met Asn Ile Asn Leu Tyr Asp His Ala Arg Gly Thr 35 40 45 Gln Thr Gly Phe Val Arg His Asp Asp Gly Tyr Val Ser Thr Ser Ile 50 55 60 Ser Leu Arg Ser Ala His Leu Val Gly Gln Thr Ile Leu Ser Gly His 65 70 75 80 Ser Thr Tyr Tyr Leu Tyr Val Leu Ala Thr Ala Pro Asn Met Phe Asn 85 90 95 Val Asn Asp Val Leu Gly Ala Tyr Ser Pro His Pro Asp Glu Gln Glu 100 105 110 Val Ser Ala Leu Gly Gly Ile Pro Tyr Ser Gln Ile Tyr Gly Trp Tyr 115 120 125 Arg Val His Phe Gly Val Leu Asp Glu Gln Leu His Arg Asn Arg Gly 130 135 140 Tyr Arg Asp Arg Tyr Tyr Ser Asn Leu Asp Ile Ala Pro Ala Ala Asp 145 150 155 160 Gly Tyr Gly Leu Ala Gly Phe Pro Pro Glu His Arg Ala Trp Arg Glu 165 170 175 Glu Pro Trp Ile His His Ala Pro Pro Gly Cys Gly Asn Ala Pro Arg 180 185 190

Ser Ser <210> 15

Page 32

002806-084952-PCT_SL.txt <211> 46 <212> PRT <213> Vibrio cholerae <400> 15

Met Ser Asn 1 Thr Cys 5 Asp Glu Lys Thr Gln 10 Ser Leu Gly Val Lys 15 Phe Leu Asp Glu Tyr Gln Ser Lys Val Lys Arg Gln Ile Phe Ser Gly Tyr 20 25 30 Gln Ser Asp Ile Asp Thr His Asn Arg Ile Lys Asp Glu Leu

35 40 45 <210> 16 <211> 103 <212> PRT <213> Vibrio cholerae

<400> 16 Thr Pro Gln Asn Ile Thr Asp Leu Cys Ala Glu Tyr His Asn Thr Gln 1 5 10 15 Ile Tyr Thr Leu Asn Asp Lys Ile Phe Ser Tyr Thr Glu Ser Leu Ala 20 25 30 Gly Lys Arg Glu Met Ala Ile Ile Thr Phe Lys Asn Gly Ala Ile Phe 35 40 45 Gln Val Glu Val Pro Ser Ser Gln His Ile Asp Ser Gln Lys Lys Ala 50 55 60 Ile Glu Arg Met Lys Asp Thr Leu Arg Ile Ala Tyr Leu Thr Glu Ala 65 70 75 80 Lys Val Glu Lys Leu Cys Thr Trp Asn Asn Lys Thr Pro His Ala Ile 85 90 95 Ala Ala Ile Ser Met Ala Asn

100 <210> 17 <211> 456 <212> PRT <213> Clostridium tetani

<400> 17 Met Pro Ile Thr Ile Asn Asn Phe Arg Tyr Ser Asp Pro Val Asn Asn 1 5 10 15

Asp Thr Ile Ile Met Met Glu Pro Pro Tyr Cys Lys Gly Leu Asp Ile 20 25 30

Page 33

002806-084952-PCT_SL.txt

Tyr Tyr Lys 35 Ala Phe Lys Ile Thr 40 Asp Arg Ile Trp Ile 45 Val Pro Glu Arg Tyr Glu Phe Gly Thr Lys Pro Glu Asp Phe Asn Pro Pro Ser Ser 50 55 60 Leu Ile Glu Gly Ala Ser Glu Tyr Tyr Asp Pro Asn Tyr Leu Arg Thr 65 70 75 80 Asp Ser Asp Lys Asp Arg Phe Leu Gln Thr Met Val Lys Leu Phe Asn 85 90 95 Arg Ile Lys Asn Asn Val Ala Gly Glu Ala Leu Leu Asp Lys Ile Ile 100 105 110 Asn Ala Ile Pro Tyr Leu Gly Asn Ser Tyr Ser Leu Leu Asp Lys Phe 115 120 125 Asp Thr Asn Ser Asn Ser Val Ser Phe Asn Leu Leu Glu Gln Asp Pro 130 135 140 Ser Gly Ala Thr Thr Lys Ser Ala Met Leu Thr Asn Leu Ile Ile Phe 145 150 155 160 Gly Pro Gly Pro Val Leu Asn Lys Asn Glu Val Arg Gly Ile Val Leu 165 170 175 Arg Val Asp Asn Lys Asn Tyr Phe Pro Cys Arg Asp Gly Phe Gly Ser 180 185 190 Ile Met Gln Met Ala Phe Cys Pro Glu Tyr Val Pro Thr Phe Asp Asn 195 200 205 Val Ile Glu Asn Ile Thr Ser Leu Thr Ile Gly Lys Ser Lys Tyr Phe 210 215 220 Gln Asp Pro Ala Leu Leu Leu Met His Glu Leu Ile His Val Leu His 225 230 235 240 Gly Leu Tyr Gly Met Gln Val Ser Ser His Glu Ile Ile Pro Ser Lys 245 250 255 Gln Glu Ile Tyr Met Gln His Thr Tyr Pro Ile Ser Ala Glu Glu Leu 260 265 270 Phe Thr Phe Gly Gly Gln Asp Ala Asn Leu Ile Ser Ile Asp Ile Lys

Page 34

275 002806-084952- 280 PCT_SL.txt 285 Asn Asp Leu Tyr Glu Lys Thr Leu Asn Asp Tyr Lys Ala Ile Ala Asn 290 295 300 Lys Leu Ser Gln Val Thr Ser Cys Asn Asp Pro Asn Ile Asp Ile Asp 305 310 315 320 Ser Tyr Lys Gln Ile Tyr Gln Gln Lys Tyr Gln Phe Asp Lys Asp Ser 325 330 335 Asn Gly Gln Tyr Ile Val Asn Glu Asp Lys Phe Gln Ile Leu Tyr Asn 340 345 350 Ser Ile Met Tyr Gly Phe Thr Glu Ile Glu Leu Gly Lys Lys Phe Asn 355 360 365 Ile Lys Thr Arg Leu Ser Tyr Phe Ser Met Asn His Asp Pro Val Lys 370 375 380 Ile Pro Asn Leu Leu Asp Asp Thr Ile Tyr Asn Asp Thr Glu Gly Phe 385 390 395 400 Asn Ile Glu Ser Lys Asp Leu Lys Ser Glu Tyr Lys Gly Gln Asn Met 405 410 415 Arg Val Asn Thr Asn Ala Phe Arg Asn Val Asp Gly Ser Gly Leu Val 420 425 430 Ser Lys Leu Ile Gly Leu Cys Lys Lys Ile Ile Pro Pro Thr Asn Ile 435 440 445 Arg Glu Asn Leu Tyr Asn Arg Thr

450 455 <210> 18 <211> 267 <212> PRT <213> Ricinus communis <400> 18

Ile 1 Phe Pro Lys Gln 5 Tyr Pro Ile Ile Asn 10 Phe Thr Thr Ala Gly Ala 15 Thr Val Gln Ser Tyr Thr Asn Phe Ile Arg Ala Val Arg Gly Arg Leu 20 25 30 Thr Thr Gly Ala Asp Val Arg His Glu Ile Pro Val Leu Pro Asn Arg 35 40 45

Page 35

002806-084952-PCT_SL.txt

Val Gly 50 Leu Pro Ile Asn Gln Arg 55 Phe Ile Leu Val 60 Glu Leu Ser Asn His Ala Glu Leu Ser Val Thr Leu Ala Leu Asp Val Thr Asn Ala Tyr 65 70 75 80 Val Val Gly Tyr Arg Ala Gly Asn Ser Ala Tyr Phe Phe His Pro Asp 85 90 95 Asn Gln Glu Asp Ala Glu Ala Ile Thr His Leu Phe Thr Asp Val Gln 100 105 110 Asn Arg Tyr Thr Phe Ala Phe Gly Gly Asn Tyr Asp Arg Leu Glu Gln 115 120 125 Leu Ala Gly Asn Leu Arg Glu Asn Ile Glu Leu Gly Asn Gly Pro Leu 130 135 140 Glu Glu Ala Ile Ser Ala Leu Tyr Tyr Tyr Ser Thr Gly Gly Thr Gln 145 150 155 160 Leu Pro Thr Leu Ala Arg Ser Phe Ile Ile Cys Ile Gln Met Ile Ser 165 170 175 Glu Ala Ala Arg Phe Gln Tyr Ile Glu Gly Glu Met Arg Thr Arg Ile 180 185 190 Arg Tyr Asn Arg Arg Ser Ala Pro Asp Pro Ser Val Ile Thr Leu Glu 195 200 205 Asn Ser Trp Gly Arg Leu Ser Thr Ala Ile Gln Glu Ser Asn Gln Gly 210 215 220 Ala Phe Ala Ser Pro Ile Gln Leu Gln Arg Arg Asn Gly Ser Lys Phe 225 230 235 240 Ser Val Tyr Asp Val Ser Ile Leu Ile Pro Ile Ile Ala Leu Met Val 245 250 255 Tyr Arg Cys Ala Pro Pro Pro Ser Ser Gln Phe 260 265

<210> 19 <211> 262 <212> PRT <213> Ricinus communis

Page 36

002806-084952-PCT_SL.txt

<400> 19 Ile 10 Val Arg Ile Val Gly 15 Arg Ala 1 Asp Val Cys Met Asp 5 Pro Glu Pro Asn Gly Leu Cys Val Asp Val Arg Asp Gly Arg Phe His Asn Gly Asn 20 25 30 Ala Ile Gln Leu Trp Pro Cys Lys Ser Asn Thr Asp Ala Asn Gln Leu 35 40 45 Trp Thr Leu Lys Arg Asp Asn Thr Ile Arg Ser Asn Gly Lys Cys Leu 50 55 60 Thr Thr Tyr Gly Tyr Ser Pro Gly Val Tyr Val Met Ile Tyr Asp Cys 65 70 75 80 Asn Thr Ala Ala Thr Asp Ala Thr Arg Trp Gln Ile Trp Asp Asn Gly 85 90 95 Thr Ile Ile Asn Pro Arg Ser Ser Leu Val Leu Ala Ala Thr Ser Gly 100 105 110 Asn Ser Gly Thr Thr Leu Thr Val Gln Thr Asn Ile Tyr Ala Val Ser 115 120 125 Gln Gly Trp Leu Pro Thr Asn Asn Thr Gln Pro Phe Val Thr Thr Ile 130 135 140 Val Gly Leu Tyr Gly Leu Cys Leu Gln Ala Asn Ser Gly Gln Val Trp 145 150 155 160 Ile Glu Asp Cys Ser Ser Glu Lys Ala Glu Gln Gln Trp Ala Leu Tyr 165 170 175 Ala Asp Gly Ser Ile Arg Pro Gln Gln Asn Arg Asp Asn Cys Leu Thr 180 185 190 Ser Asp Ser Asn Ile Arg Glu Thr Val Val Lys Ile Leu Ser Cys Gly 195 200 205 Pro Ala Ser Ser Gly Gln Arg Trp Met Phe Lys Asn Asp Gly Thr Ile 210 215 220 Leu Asn Leu Tyr Ser Gly Leu Val Leu Asp Val Arg Ala Ser Asp Pro 225 230 235 240 Ser Leu Lys Gln Ile Ile Leu Tyr Pro Leu His Gly Asp Pro Asn Gln 245 250 255 Page 37

002806-084952-PCT_SL.txt

Ile Trp Leu Pro Leu Phe 260 <210> 20 <211> 448 <212> PRT <213> Clostridium botulinum

<400> 20 Pro Val Asn 15 Gly Met 1 Pro Phe Val Asn 5 Lys Gln Phe Asn Tyr 10 Lys Asp Val Asp Ile Ala Tyr Ile Lys Ile Pro Asn Val Gly Gln Met Gln Pro 20 25 30 Val Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40 45 Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu 50 55 60 Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser Thr 65 70 75 80 Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys Leu Phe Glu 85 90 95 Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu Thr Ser Ile Val 100 105 110 Arg Gly Ile Pro Phe Trp Gly Gly Ser Thr Ile Asp Thr Glu Leu Lys 115 120 125 Val Ile Asp Thr Asn Cys Ile Asn Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140 Arg Ser Glu Glu Leu Asn Leu Val Ile Ile Gly Pro Ser Ala Asp Ile 145 150 155 160 Ile Gln Phe Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175 Arg Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185 190 Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu 195 200 205

Page 38

002806-084952-PCT_SL.txt

Gly Ala Gly Lys Phe Ala Thr 215 Asp Pro Ala Val Thr 220 Leu Ala His Glu 210 Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala Ile Asn Pro Asn 225 230 235 240 Arg Val Phe Lys Val Asn Thr Asn Ala Tyr Tyr Glu Met Ser Gly Leu 245 250 255 Glu Val Ser Phe Glu Glu Leu Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270 Phe Ile Asp Ser Leu Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285 Lys Phe Lys Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300 Gly Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys 305 310 315 320 Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys Leu 325 330 335 Lys Phe Asp Lys Leu Tyr Lys Met Leu Thr Glu Ile Tyr Thr Glu Asp 340 345 350 Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg Lys Thr Tyr Leu Asn 355 360 365 Phe Asp Lys Ala Val Phe Lys Ile Asn Ile Val Pro Lys Val Asn Tyr 370 375 380 Thr Ile Tyr Asp Gly Phe Asn Leu Arg Asn Thr Asn Leu Ala Ala Asn 385 390 395 400 Phe Asn Gly Gln Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415 Lys Asn Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys Val Arg 420 425 430 Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu Asp Lys Gly Tyr Asn Lys 435 440 445

<210> 21 <211> 430

Page 39

002806-084952-PCT_SL.txt <212> PRT <213> Clostridium botulinum <400> 21

Met 1 Pro Phe Val Asn 5 Lys Gln Phe Asn Tyr 10 Lys Asp Pro Val Asn 15 Gly Val Asp Ile Ala Tyr Ile Lys Ile Pro Asn Val Gly Gln Met Gln Pro 20 25 30 Val Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40 45 Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu 50 55 60 Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser Thr 65 70 75 80 Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys Leu Phe Glu 85 90 95 Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu Thr Ser Ile Val 100 105 110 Arg Gly Ile Pro Phe Trp Gly Gly Ser Thr Ile Asp Thr Glu Leu Lys 115 120 125 Val Ile Asp Thr Asn Cys Ile Asn Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140 Arg Ser Glu Glu Leu Asn Leu Val Ile Ile Gly Pro Ser Ala Asp Ile 145 150 155 160 Ile Gln Phe Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175 Arg Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185 190 Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu 195 200 205 Gly Ala Gly Lys Phe Ala Thr Asp Pro Ala Val Thr Leu Ala His Glu 210 215 220 Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala Ile Asn Pro Asn 225 230 235 240

Page 40

002806-084952-PCT_SL.txt

Arg Val Phe Lys Val 245 Asn Thr Asn Ala Tyr Tyr Glu Met Ser Gly Leu 250 255 Glu Val Ser Phe Glu Glu Leu Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270 Phe Ile Asp Ser Leu Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285 Lys Phe Lys Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300 Gly Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys 305 310 315 320 Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys Leu 325 330 335 Lys Phe Asp Lys Leu Tyr Lys Met Leu Thr Glu Ile Tyr Thr Glu Asp 340 345 350 Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg Lys Thr Tyr Leu Asn 355 360 365 Phe Asp Lys Ala Val Phe Lys Ile Asn Ile Val Pro Lys Val Asn Tyr 370 375 380 Thr Ile Tyr Asp Gly Phe Asn Leu Arg Asn Thr Asn Leu Ala Ala Asn 385 390 395 400 Phe Asn Gly Gln Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415 Lys Asn Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys

420 425 430 <210> 22 <211> 441 <212> PRT <213> Clostridium botulinum <400> 22

Met 1 Pro Val Thr Ile Asn 5 Asn Phe Asn Tyr Asn Asp 10 Pro Ile Asp 15 Asn Asn Asn Ile Ile Met Met Glu Pro Pro Phe Ala Arg Gly Thr Gly Arg 20 25 30

Page 41

Tyr Tyr Lys 35 Ala Phe Lys Ile 002806-084952Thr Asp Arg Ile 40 PCT_SL.txt Trp Ile 45 Ile Pro Glu Arg Tyr Thr Phe Gly Tyr Lys Pro Glu Asp Phe Asn Lys Ser Ser Gly 50 55 60 Ile Phe Asn Arg Asp Val Cys Glu Tyr Tyr Asp Pro Asp Tyr Leu Asn 65 70 75 80 Thr Asn Asp Lys Lys Asn Ile Phe Leu Gln Thr Met Ile Lys Leu Phe 85 90 95 Asn Arg Ile Lys Ser Lys Pro Leu Gly Glu Lys Leu Leu Glu Met Ile 100 105 110 Ile Asn Gly Ile Pro Tyr Leu Gly Asp Arg Arg Val Pro Leu Glu Glu 115 120 125 Phe Asn Thr Asn Ile Ala Ser Val Thr Val Asn Lys Leu Ile Ser Asn 130 135 140 Pro Gly Glu Val Glu Arg Lys Lys Gly Ile Phe Ala Asn Leu Ile Ile 145 150 155 160 Phe Gly Pro Gly Pro Val Leu Asn Glu Asn Glu Thr Ile Asp Ile Gly 165 170 175 Ile Gln Asn His Phe Ala Ser Arg Glu Gly Phe Gly Gly Ile Met Gln 180 185 190 Met Lys Phe Cys Pro Glu Tyr Val Ser Val Phe Asn Asn Val Gln Glu 195 200 205 Asn Lys Gly Ala Ser Ile Phe Asn Arg Arg Gly Tyr Phe Ser Asp Pro 210 215 220 Ala Leu Ile Leu Met His Glu Leu Ile His Val Leu His Gly Leu Tyr 225 230 235 240 Gly Ile Lys Val Asp Asp Leu Pro Ile Val Pro Asn Glu Lys Lys Phe 245 250 255 Phe Met Gln Ser Thr Asp Ala Ile Gln Ala Glu Glu Leu Tyr Thr Phe 260 265 270 Gly Gly Gln Asp Pro Ser Ile Ile Thr Pro Ser Thr Asp Lys Ser Ile 275 280 285

Page 42

002806-084952-PCT_SL.txt

Tyr Asp 290 Lys Val Leu Gln Asn 295 Phe Arg Gly Ile Val 300 Asp Arg Leu Asn Lys Val Leu Val Cys Ile Ser Asp Pro Asn Ile Asn Ile Asn Ile Tyr 305 310 315 320 Lys Asn Lys Phe Lys Asp Lys Tyr Lys Phe Val Glu Asp Ser Glu Gly 325 330 335 Lys Tyr Ser Ile Asp Val Glu Ser Phe Asp Lys Leu Tyr Lys Ser Leu 340 345 350 Met Phe Gly Phe Thr Glu Thr Asn Ile Ala Glu Asn Tyr Lys Ile Lys 355 360 365 Thr Arg Ala Ser Tyr Phe Ser Asp Ser Leu Pro Pro Val Lys Ile Lys 370 375 380 Asn Leu Leu Asp Asn Glu Ile Tyr Thr Ile Glu Glu Gly Phe Asn Ile 385 390 395 400 Ser Asp Lys Asp Met Glu Lys Glu Tyr Arg Gly Gln Asn Lys Ala Ile 405 410 415 Asn Lys Gln Ala Tyr Glu Glu Ile Ser Lys Glu His Leu Ala Val Tyr 420 425 430 Lys Ile Gln Met Cys Lys Ser Val Lys

435 440 <210> 23 <211> 437 <212> PRT <213> Clostridium botulinum <400> 23

Met Pro Val Thr Ile Asn Asn Phe Asn Tyr Asn Asp Pro Ile Asp Asn 1 5 10 15 Asn Asn Ile Ile Met Met Glu Pro Pro Phe Ala Arg Gly Thr Gly Arg 20 25 30 Tyr Tyr Lys Ala Phe Lys Ile Thr Asp Arg Ile Trp Ile Ile Pro Glu 35 40 45 Arg Tyr Thr Phe Gly Tyr Lys Pro Glu Asp Phe Asn Lys Ser Ser Gly 50 55 60

Page 43

Ile 65 Phe Asn Arg Asp Val 70 Cys 002806-084952Glu Tyr Tyr Asp 75 PCT_SL.txt Pro Asp Tyr Leu Asn 80 Thr Asn Asp Lys Lys Asn Ile Phe Leu Gln Thr Met Ile Lys Leu Phe 85 90 95 Asn Arg Ile Lys Ser Lys Pro Leu Gly Glu Lys Leu Leu Glu Met Ile 100 105 110 Ile Asn Gly Ile Pro Tyr Leu Gly Asp Arg Arg Val Pro Leu Glu Glu 115 120 125 Phe Asn Thr Asn Ile Ala Ser Val Thr Val Asn Lys Leu Ile Ser Asn 130 135 140 Pro Gly Glu Val Glu Arg Lys Lys Gly Ile Phe Ala Asn Leu Ile Ile 145 150 155 160 Phe Gly Pro Gly Pro Val Leu Asn Glu Asn Glu Thr Ile Asp Ile Gly 165 170 175 Ile Gln Asn His Phe Ala Ser Arg Glu Gly Phe Gly Gly Ile Met Gln 180 185 190 Met Lys Phe Cys Pro Glu Tyr Val Ser Val Phe Asn Asn Val Gln Glu 195 200 205 Asn Lys Gly Ala Ser Ile Phe Asn Arg Arg Gly Tyr Phe Ser Asp Pro 210 215 220 Ala Leu Ile Leu Met His Glu Leu Ile His Val Leu His Gly Leu Tyr 225 230 235 240 Gly Ile Lys Val Asp Asp Leu Pro Ile Val Pro Asn Glu Lys Lys Phe 245 250 255 Phe Met Gln Ser Thr Asp Ala Ile Gln Ala Glu Glu Leu Tyr Thr Phe 260 265 270 Gly Gly Gln Asp Pro Ser Ile Ile Thr Pro Ser Thr Asp Lys Ser Ile 275 280 285 Tyr Asp Lys Val Leu Gln Asn Phe Arg Gly Ile Val Asp Arg Leu Asn 290 295 300 Lys Val Leu Val Cys Ile Ser Asp Pro Asn Ile Asn Ile Asn Ile Tyr 305 310 315 320

Page 44

002806-084952-PCT_SL.txt

Lys Asn Lys Phe Lys 325 Asp Lys Tyr Lys Phe 330 Val Glu Asp Ser Glu 335 Gly Lys Tyr Ser Ile Asp Val Glu Ser Phe Asp Lys Leu Tyr Lys Ser Leu 340 345 350 Met Phe Gly Phe Thr Glu Thr Asn Ile Ala Glu Asn Tyr Lys Ile Lys 355 360 365 Thr Arg Ala Ser Tyr Phe Ser Asp Ser Leu Pro Pro Val Lys Ile Lys 370 375 380 Asn Leu Leu Asp Asn Glu Ile Tyr Thr Ile Glu Glu Gly Phe Asn Ile 385 390 395 400 Ser Asp Lys Asp Met Glu Lys Glu Tyr Arg Gly Gln Asn Lys Ala Ile 405 410 415 Asn Lys Gln Ala Tyr Glu Glu Ile Ser Lys Glu His Leu Ala Val Tyr 420 425 430 Lys Ile Gln Met Cys

435 <210> 24 <211> 449 <212> PRT <213> Clostridium botulinum <400> 24

Met 1 Pro Ile Thr Ile Asn 5 Asn Phe Asn Tyr 10 Ser Asp Pro Val Asp 15 Asn Lys Asn Ile Leu Tyr Leu Asp Thr His Leu Asn Thr Leu Ala Asn Glu 20 25 30 Pro Glu Lys Ala Phe Arg Ile Thr Gly Asn Ile Trp Val Ile Pro Asp 35 40 45 Arg Phe Ser Arg Asn Ser Asn Pro Asn Leu Asn Lys Pro Pro Arg Val 50 55 60 Thr Ser Pro Lys Ser Gly Tyr Tyr Asp Pro Asn Tyr Leu Ser Thr Asp 65 70 75 80 Ser Asp Lys Asp Pro Phe Leu Lys Glu Ile Ile Lys Leu Phe Lys Arg 85 90 95

Page 45

Ile Asn Ser Arg 100 Glu 002806 Ile Gly Glu Glu 105 -084952- PCT_SL.txt Leu Ile Tyr Arg Leu 110 Ser Thr Asp Ile Pro Phe Pro Gly Asn Asn Asn Thr Pro Ile Asn Thr Phe Asp 115 120 125 Phe Asp Val Asp Phe Asn Ser Val Asp Val Lys Thr Arg Gln Gly Asn 130 135 140 Asn Trp Val Lys Thr Gly Ser Ile Asn Pro Ser Val Ile Ile Thr Gly 145 150 155 160 Pro Arg Glu Asn Ile Ile Asp Pro Glu Thr Ser Thr Phe Lys Leu Thr 165 170 175 Asn Asn Thr Phe Ala Ala Gln Glu Gly Phe Gly Ala Leu Ser Ile Ile 180 185 190 Ser Ile Ser Pro Arg Phe Met Leu Thr Tyr Ser Asn Ala Thr Asn Asp 195 200 205 Val Gly Glu Gly Arg Phe Ser Lys Ser Glu Phe Cys Met Asp Pro Ile 210 215 220 Leu Ile Leu Met His Glu Leu Asn His Ala Met His Asn Leu Tyr Gly 225 230 235 240 Ile Ala Ile Pro Asn Asp Gln Thr Ile Ser Ser Val Thr Ser Asn Ile 245 250 255 Phe Tyr Ser Gln Tyr Asn Val Lys Leu Glu Tyr Ala Glu Ile Tyr Ala 260 265 270 Phe Gly Gly Pro Thr Ile Asp Leu Ile Pro Lys Ser Ala Arg Lys Tyr 275 280 285 Phe Glu Glu Lys Ala Leu Asp Tyr Tyr Arg Ser Ile Ala Lys Arg Leu 290 295 300 Asn Ser Ile Thr Thr Ala Asn Pro Ser Ser Phe Asn Lys Tyr Ile Gly 305 310 315 320 Glu Tyr Lys Gln Lys Leu Ile Arg Lys Tyr Arg Phe Val Val Glu Ser 325 330 335 Ser Gly Glu Val Thr Val Asn Arg Asn Lys Phe Val Glu Leu Tyr Asn 340 345 350

Page 46

002806-084952-PCT_SL.txt

Glu Leu Thr 355 Gln Ile Phe Thr Glu 360 Phe Asn Tyr Ala Lys 365 Ile Tyr Asn Val Gln Asn Arg Lys Ile Tyr Leu Ser Asn Val Tyr Thr Pro Val Thr 370 375 380 Ala Asn Ile Leu Asp Asp Asn Val Tyr Asp Ile Gln Asn Gly Phe Asn 385 390 395 400 Ile Pro Lys Ser Asn Leu Asn Val Leu Phe Met Gly Gln Asn Leu Ser 405 410 415 Arg Asn Pro Ala Leu Arg Lys Val Asn Pro Glu Asn Met Leu Tyr Leu 420 425 430 Phe Thr Lys Phe Cys His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn

435 440 445

Lys <210> 25 <211> 442 <212> PRT <213> Clostridium botulinum <400> 25

Met Thr 1 Trp Pro Val 5 Lys Asp Phe Asn Tyr Ser Asp 10 Pro Val Asn 15 Asp Asn Asp Ile Leu Tyr Leu Arg Ile Pro Gln Asn Lys Leu Ile Thr Thr 20 25 30 Pro Val Lys Ala Phe Met Ile Thr Gln Asn Ile Trp Val Ile Pro Glu 35 40 45 Arg Phe Ser Ser Asp Thr Asn Pro Ser Leu Ser Lys Pro Pro Arg Pro 50 55 60 Thr Ser Lys Tyr Gln Ser Tyr Tyr Asp Pro Ser Tyr Leu Ser Thr Asp 65 70 75 80 Glu Gln Lys Asp Thr Phe Leu Lys Gly Ile Ile Lys Leu Phe Lys Arg 85 90 95 Ile Asn Glu Arg Asp Ile Gly Lys Lys Leu Ile Asn Tyr Leu Val Val 100 105 110

Page 47

Gly Ser Pro 115 Phe Met Gly Asp 002806 Ser Ser 120 -084952- PCT_SL.txt Thr Pro Glu Asp 125 Thr Phe Asp Phe Thr Arg His Thr Thr Asn Ile Ala Val Glu Lys Phe Glu Asn Gly 130 135 140 Ser Trp Lys Val Thr Asn Ile Ile Thr Pro Ser Val Leu Ile Phe Gly 145 150 155 160 Pro Leu Pro Asn Ile Leu Asp Tyr Thr Ala Ser Leu Thr Leu Gln Gly 165 170 175 Gln Gln Ser Asn Pro Ser Phe Glu Gly Phe Gly Thr Leu Ser Ile Leu 180 185 190 Lys Val Ala Pro Glu Phe Leu Leu Thr Phe Ser Asp Val Thr Ser Asn 195 200 205 Gln Ser Ser Ala Val Leu Gly Lys Ser Ile Phe Cys Met Asp Pro Val 210 215 220 Ile Ala Leu Met His Glu Leu Thr His Ser Leu His Gln Leu Tyr Gly 225 230 235 240 Ile Asn Ile Pro Ser Asp Lys Arg Ile Arg Pro Gln Val Ser Glu Gly 245 250 255 Phe Phe Ser Gln Asp Gly Pro Asn Val Gln Phe Glu Glu Leu Tyr Thr 260 265 270 Phe Gly Gly Leu Asp Val Glu Ile Ile Pro Gln Ile Glu Arg Ser Gln 275 280 285 Leu Arg Glu Lys Ala Leu Gly His Tyr Lys Asp Ile Ala Lys Arg Leu 290 295 300 Asn Asn Ile Asn Lys Thr Ile Pro Ser Ser Trp Ile Ser Asn Ile Asp 305 310 315 320 Lys Tyr Lys Lys Ile Phe Ser Glu Lys Tyr Asn Phe Asp Lys Asp Asn 325 330 335 Thr Gly Asn Phe Val Val Asn Ile Asp Lys Phe Asn Ser Leu Tyr Ser 340 345 350 Asp Leu Thr Asn Val Met Ser Glu Val Val Tyr Ser Ser Gln Tyr Asn 355 360 365

Page 48

002806-084952-PCT_SL.txt

Val Lys 370 Asn Arg Thr His Tyr 375 Phe Ser Arg His Tyr 380 Leu Pro Val Phe Ala Asn Ile Leu Asp Asp Asn Ile Tyr Thr Ile Arg Asp Gly Phe Asn 385 390 395 400 Leu Thr Asn Lys Gly Phe Asn Ile Glu Asn Ser Gly Gln Asn Ile Glu 405 410 415 Arg Asn Pro Ala Leu Gln Lys Leu Ser Ser Glu Ser Val Val Asp Leu 420 425 430 Phe Thr Lys Val Cys Leu Arg Leu Thr Lys

435 440 <210> 26 <211> 422 <212> PRT <213> Clostridium botulinum <400> 26

Met 1 Pro Thr Ile Asn 5 Ser Phe Asn Tyr Asn Asp 10 Pro Val Asn Asn 15 Arg Thr Ile Leu Tyr Ile Lys Pro Gly Gly Cys Gln Gln Phe Tyr Lys Ser 20 25 30 Phe Asn Ile Met Lys Asn Ile Trp Ile Ile Pro Glu Arg Asn Val Ile 35 40 45 Gly Thr Ile Pro Gln Asp Phe Leu Pro Pro Thr Ser Leu Lys Asn Gly 50 55 60 Asp Ser Ser Tyr Tyr Asp Pro Asn Tyr Leu Gln Ser Asp Gln Glu Lys 65 70 75 80 Asp Lys Phe Leu Lys Ile Val Thr Lys Ile Phe Asn Arg Ile Asn Asp 85 90 95 Asn Leu Ser Gly Arg Ile Leu Leu Glu Glu Leu Ser Lys Ala Asn Pro 100 105 110 Tyr Leu Gly Asn Asp Asn Thr Pro Asp Gly Asp Phe Ile Ile Asn Asp 115 120 125 Ala Ser Ala Val Pro Ile Gln Phe Ser Asn Gly Ser Gln Ser Ile Leu 130 135 140

Page 49

Leu 145 Pro Asn Val Ile Ile 150 Met 002806 Gly Ala -084952- PCT_SL.txt Glu Pro 155 Asp Leu Phe Glu Thr 160 Asn Ser Ser Asn Ile Ser Leu Arg Asn Asn Tyr Met Pro Ser Asn His 165 170 175 Gly Phe Gly Ser Ile Ala Ile Val Thr Phe Ser Pro Glu Tyr Ser Phe 180 185 190 Arg Phe Lys Asp Asn Ser Met Asn Glu Phe Ile Gln Asp Pro Ala Leu 195 200 205 Thr Leu Met His Glu Leu Ile His Ser Leu His Gly Leu Tyr Gly Ala 210 215 220 Lys Gly Ile Thr Thr Lys Tyr Thr Ile Thr Gln Lys Gln Asn Pro Leu 225 230 235 240 Ile Thr Asn Ile Arg Gly Thr Asn Ile Glu Glu Phe Leu Thr Phe Gly 245 250 255 Gly Thr Asp Leu Asn Ile Ile Thr Ser Ala Gln Ser Asn Asp Ile Tyr 260 265 270 Thr Asn Leu Leu Ala Asp Tyr Lys Lys Ile Ala Ser Lys Leu Ser Lys 275 280 285 Val Gln Val Ser Asn Pro Leu Leu Asn Pro Tyr Lys Asp Val Phe Glu 290 295 300 Ala Lys Tyr Gly Leu Asp Lys Asp Ala Ser Gly Ile Tyr Ser Val Asn 305 310 315 320 Ile Asn Lys Phe Asn Asp Ile Phe Lys Lys Leu Tyr Ser Phe Thr Glu 325 330 335 Phe Asp Leu Ala Thr Lys Phe Gln Val Lys Cys Arg Gln Thr Tyr Ile 340 345 350 Gly Gln Tyr Lys Tyr Phe Lys Leu Ser Asn Leu Leu Asn Asp Ser Ile 355 360 365 Tyr Asn Ile Ser Glu Gly Tyr Asn Ile Asn Asn Leu Lys Val Asn Phe 370 375 380 Arg Gly Gln Asn Ala Asn Leu Asn Pro Arg Ile Ile Thr Pro Ile Thr 385 390 395 400

Page 50

002806-084952-PCT_SL.txt

Gly Arg Gly Leu Val Lys Lys Ile Ile Arg Phe Cys Lys Asn Ile Val 405 410 415

Ser Val Lys Gly Ile Arg 420 <210> 27 <211> 436 <212> PRT <213> Clostridium botulinum

<400> 27 Met 1 Pro Val Ala Ile Asn 5 Ser Phe Asn Tyr 10 Asn Asp Pro Val Asn 15 Asp Asp Thr Ile Leu Tyr Met Gln Ile Pro Tyr Glu Glu Lys Ser Lys Lys 20 25 30 Tyr Tyr Lys Ala Phe Glu Ile Met Arg Asn Val Trp Ile Ile Pro Glu 35 40 45 Arg Asn Thr Ile Gly Thr Asn Pro Ser Asp Phe Asp Pro Pro Ala Ser 50 55 60 Leu Lys Asn Gly Ser Ser Ala Tyr Tyr Asp Pro Asn Tyr Leu Thr Thr 65 70 75 80 Asp Ala Glu Lys Asp Arg Tyr Leu Lys Thr Thr Ile Lys Leu Phe Lys 85 90 95 Arg Ile Asn Ser Asn Pro Ala Gly Lys Val Leu Leu Gln Glu Ile Ser 100 105 110 Tyr Ala Lys Pro Tyr Leu Gly Asn Asp His Thr Pro Ile Asp Glu Phe 115 120 125 Ser Pro Val Thr Arg Thr Thr Ser Val Asn Ile Lys Leu Ser Thr Asn 130 135 140 Val Glu Ser Ser Met Leu Leu Asn Leu Leu Val Leu Gly Ala Gly Pro 145 150 155 160 Asp Ile Phe Glu Ser Cys Cys Tyr Pro Val Arg Lys Leu Ile Asp Pro 165 170 175 Asp Val Val Tyr Asp Pro Ser Asn Tyr Gly Phe Gly Ser Ile Asn Ile 180 185 190

Page 51

Val Thr Phe 195 Ser Pro Glu 002806 Tyr Glu Tyr 200 -084952- PCT_SL.txt Ser Gly Thr Phe Asn Asp 205 Ile Gly His Asn Ser Ser Thr Glu Ser Phe Ile Ala Asp Pro Ala Ile Ser 210 215 220 Leu Ala His Glu Leu Ile His Ala Leu His Gly Leu Tyr Gly Ala Arg 225 230 235 240 Gly Val Thr Tyr Glu Glu Thr Ile Glu Val Lys Gln Ala Pro Leu Met 245 250 255 Ile Ala Glu Lys Pro Ile Arg Leu Glu Glu Phe Leu Thr Phe Gly Gly 260 265 270 Gln Asp Leu Asn Ile Ile Thr Ser Ala Met Lys Glu Lys Ile Tyr Asn 275 280 285 Asn Leu Leu Ala Asn Tyr Glu Lys Ile Ala Thr Arg Leu Ser Glu Val 290 295 300 Asn Ser Ala Pro Pro Glu Tyr Asp Ile Asn Glu Tyr Lys Asp Tyr Phe 305 310 315 320 Gln Trp Lys Tyr Gly Leu Asp Lys Asn Ala Asp Gly Ser Tyr Thr Val 325 330 335 Asn Glu Asn Lys Phe Asn Glu Ile Tyr Lys Lys Leu Tyr Ser Phe Thr 340 345 350 Glu Ser Asp Leu Ala Asn Lys Phe Lys Val Lys Cys Arg Asn Thr Tyr 355 360 365 Phe Ile Lys Tyr Glu Phe Leu Lys Val Pro Asn Leu Leu Asp Asp Asp 370 375 380 Ile Tyr Thr Val Ser Glu Gly Phe Asn Ile Gly Asn Leu Ala Val Asn 385 390 395 400 Asn Arg Gly Gln Ser Ile Lys Leu Asn Pro Lys Ile Ile Asp Ser Ile 405 410 415 Pro Asp Lys Gly Leu Val Glu Lys Ile Val Lys Phe Cys Lys Ser Val 420 425 430

Ile Pro Arg Lys 435

Page 52

002806-084952-PCT_SL.txt <210> 28 <211> 442 <212> PRT <213> Clostridium botulinum <220>

<221> MOD_RES <222> (7)..(7) <223> Any amino acid

<400> 28 Xaa Phe Asn Tyr 10 Asn Asp Pro Ile Asn 15 Asn Met 1 Pro Val Asn Ile 5 Lys Asp Asp Ile Ile Met Met Glu Pro Phe Asn Asp Pro Gly Pro Gly Thr 20 25 30 Tyr Tyr Lys Ala Phe Arg Ile Ile Asp Arg Ile Trp Ile Val Pro Glu 35 40 45 Arg Phe Thr Tyr Gly Phe Gln Pro Asp Gln Phe Asn Ala Ser Thr Gly 50 55 60 Val Phe Ser Lys Asp Val Tyr Glu Tyr Tyr Asp Pro Thr Tyr Leu Lys 65 70 75 80 Thr Asp Ala Glu Lys Asp Lys Phe Leu Lys Thr Met Ile Lys Leu Phe 85 90 95 Asn Arg Ile Asn Ser Lys Pro Ser Gly Gln Arg Leu Leu Asp Met Ile 100 105 110 Val Asp Ala Ile Pro Tyr Leu Gly Asn Ala Ser Thr Pro Pro Asp Lys 115 120 125 Phe Ala Ala Asn Val Ala Asn Val Ser Ile Asn Lys Lys Ile Ile Gln 130 135 140 Pro Gly Ala Glu Asp Gln Ile Lys Gly Leu Met Thr Asn Leu Ile Ile 145 150 155 160 Phe Gly Pro Gly Pro Val Leu Ser Asp Asn Phe Thr Asp Ser Met Ile 165 170 175 Met Asn Gly His Ser Pro Ile Ser Glu Gly Phe Gly Ala Arg Met Met 180 185 190 Ile Arg Phe Cys Pro Ser Cys Leu Asn Val Phe Asn Asn Val Gln Glu 195 200 205

Page 53

002806-084952-PCT_SL.txt

Asn Lys Asp Thr Ser 210 Ile Phe 215 Ser Arg Arg Ala Tyr 220 Phe Ala Asp Pro Ala Leu Thr Leu Met His Glu Leu Ile His Val Leu His Gly Leu Tyr 225 230 235 240 Gly Ile Lys Ile Ser Asn Leu Pro Ile Thr Pro Asn Thr Lys Glu Phe 245 250 255 Phe Met Gln His Ser Asp Pro Val Gln Ala Glu Glu Leu Tyr Thr Phe 260 265 270 Gly Gly His Asp Pro Ser Val Ile Ser Pro Ser Thr Asp Met Asn Ile 275 280 285 Tyr Asn Lys Ala Leu Gln Asn Phe Gln Asp Ile Ala Asn Arg Leu Asn 290 295 300 Ile Val Ser Ser Ala Gln Gly Ser Gly Ile Asp Ile Ser Leu Tyr Lys 305 310 315 320 Gln Ile Tyr Lys Asn Lys Tyr Asp Phe Val Glu Asp Pro Asn Gly Lys 325 330 335 Tyr Ser Val Asp Lys Asp Lys Phe Asp Lys Leu Tyr Lys Ala Leu Met 340 345 350 Phe Gly Phe Thr Glu Thr Asn Leu Ala Gly Glu Tyr Gly Ile Lys Thr 355 360 365 Arg Tyr Ser Tyr Phe Ser Glu Tyr Leu Pro Pro Ile Lys Thr Glu Lys 370 375 380 Leu Leu Asp Asn Thr Ile Tyr Thr Gln Asn Glu Gly Phe Asn Ile Ala 385 390 395 400 Ser Lys Asn Leu Lys Thr Glu Phe Asn Gly Gln Asn Lys Ala Val Asn 405 410 415 Lys Glu Ala Tyr Glu Glu Ile Ser Leu Glu His Leu Val Ile Tyr Arg 420 425 430 Ile Ala Met Cys Lys Pro Val Met Tyr Lys 435 440

<210> 29

Page 54

002806-084952-PCT_SL.txt <211> 872 <212> PRT <213> Clostridium botulinum <400> 29

Met 1 Pro Phe Val Asn 5 Lys Gln Phe Asn Tyr 10 Lys Asp Pro Val Asn 15 Gly Val Asp Ile Ala Tyr Ile Lys Ile Pro Asn Val Gly Gln Met Gln Pro 20 25 30 Val Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40 45 Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu 50 55 60 Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser Thr 65 70 75 80 Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys Leu Phe Glu 85 90 95 Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu Thr Ser Ile Val 100 105 110 Arg Gly Ile Pro Phe Trp Gly Gly Ser Thr Ile Asp Thr Glu Leu Lys 115 120 125 Val Ile Asp Thr Asn Cys Ile Asn Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140 Arg Ser Glu Glu Leu Asn Leu Val Ile Ile Gly Pro Ser Ala Asp Ile 145 150 155 160 Ile Gln Phe Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175 Arg Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185 190 Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu 195 200 205 Gly Ala Gly Lys Phe Ala Thr Asp Pro Ala Val Thr Leu Ala His Glu 210 215 220 Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala Ile Asn Pro Asn 225 230 235 240 Page 55

002806-084952-PCT_SL.txt

Arg Val Phe Lys Val 245 Asn Thr Asn Ala Tyr Tyr Glu Met Ser Gly Leu 250 255 Glu Val Ser Phe Glu Glu Leu Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270 Phe Ile Asp Ser Leu Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285 Lys Phe Lys Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300 Gly Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys 305 310 315 320 Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys Leu 325 330 335 Lys Phe Asp Lys Leu Tyr Lys Met Leu Thr Glu Ile Tyr Thr Glu Asp 340 345 350 Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg Lys Thr Tyr Leu Asn 355 360 365 Phe Asp Lys Ala Val Phe Lys Ile Asn Ile Val Pro Lys Val Asn Tyr 370 375 380 Thr Ile Tyr Asp Gly Phe Asn Leu Arg Asn Thr Asn Leu Ala Ala Asn 385 390 395 400 Phe Asn Gly Gln Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415 Lys Asn Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys Val Arg 420 425 430 Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu Asp Lys Gly Tyr Asn Lys 435 440 445 Ala Leu Asn Asp Leu Cys Ile Lys Val Asn Asn Trp Asp Leu Phe Phe 450 455 460 Ser Pro Ser Glu Asp Asn Phe Thr Asn Asp Leu Asn Lys Gly Glu Glu 465 470 475 480 Ile Thr Ser Asp Thr Asn Ile Glu Ala Ala Glu Glu Asn Ile Ser Leu

Page 56

485 002806 -084952- 490 PCT_SL.txt 495 Asp Leu Ile Gln Gln Tyr Tyr Leu Thr Phe Asn Phe Asp Asn Glu Pro 500 505 510 Glu Asn Ile Ser Ile Glu Asn Leu Ser Ser Asp Ile Ile Gly Gln Leu 515 520 525 Glu Leu Met Pro Asn Ile Glu Arg Phe Pro Asn Gly Lys Lys Tyr Glu 530 535 540 Leu Asp Lys Tyr Thr Met Phe His Tyr Leu Arg Ala Gln Glu Phe Glu 545 550 555 560 His Gly Lys Ser Arg Ile Ala Leu Thr Asn Ser Val Asn Glu Ala Leu 565 570 575 Leu Asn Pro Ser Arg Val Tyr Thr Phe Phe Ser Ser Asp Tyr Val Lys 580 585 590 Lys Val Asn Lys Ala Thr Glu Ala Ala Met Phe Leu Gly Trp Val Glu 595 600 605 Gln Leu Val Tyr Asp Phe Thr Asp Glu Thr Ser Glu Val Ser Thr Thr 610 615 620 Asp Lys Ile Ala Asp Ile Thr Ile Ile Ile Pro Tyr Ile Gly Pro Ala 625 630 635 640 Leu Asn Ile Gly Asn Met Leu Tyr Lys Asp Asp Phe Val Gly Ala Leu 645 650 655 Ile Phe Ser Gly Ala Val Ile Leu Leu Glu Phe Ile Pro Glu Ile Ala 660 665 670 Ile Pro Val Leu Gly Thr Phe Ala Leu Val Ser Tyr Ile Ala Asn Lys 675 680 685 Val Leu Thr Val Gln Thr Ile Asp Asn Ala Leu Ser Lys Arg Asn Glu 690 695 700 Lys Trp Asp Glu Val Tyr Lys Tyr Ile Val Thr Asn Trp Leu Ala Lys 705 710 715 720 Val Asn Thr Gln Ile Asp Leu Ile Arg Lys Lys Met Lys Glu Ala Leu 725 730 735

Page 57

Glu Asn Gln Ala Glu Ala Thr 002806 Lys Ala 745 -084952- PCT_SL.txt Ile Ile Asn Tyr Gln 750 Tyr Asn 740 Gln Tyr Thr Glu Glu Glu Lys Asn Asn Ile Asn Phe Asn Ile Asp Asp 755 760 765 Leu Ser Ser Lys Leu Asn Glu Ser Ile Asn Lys Ala Met Ile Asn Ile 770 775 780 Asn Lys Phe Leu Asn Gln Cys Ser Val Ser Tyr Leu Met Asn Ser Met 785 790 795 800 Ile Pro Tyr Gly Val Lys Arg Leu Glu Asp Phe Asp Ala Ser Leu Lys 805 810 815 Asp Ala Leu Leu Lys Tyr Ile Tyr Asp Asn Arg Gly Thr Leu Ile Gly 820 825 830 Gln Val Asp Arg Leu Lys Asp Lys Val Asn Asn Thr Leu Ser Thr Asp 835 840 845 Ile Pro Phe Gln Leu Ser Lys Tyr Val Asp Asn Gln Arg Leu Leu Ser 850 855 860 Thr Phe Thr Glu Tyr Ile Lys Asn

865 870 <210> 30 <211> 842 <212> PRT <213> Clostridium botulinum <400> 30

Met 1 Pro Phe Val Asn 5 Lys Gln Phe Asn Tyr 10 Lys Asp Pro Val Asn 15 Gly Val Asp Ile Ala Tyr Ile Lys Ile Pro Asn Val Gly Gln Met Gln Pro 20 25 30 Val Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40 45 Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu 50 55 60 Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser Thr 65 70 75 80 Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys Leu Phe Glu

Page 58

85 002806-084952- 90 PCT_SL.txt 95 Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu Thr Ser Ile Val 100 105 110 Arg Gly Ile Pro Phe Trp Gly Gly Ser Thr Ile Asp Thr Glu Leu Lys 115 120 125 Val Ile Asp Thr Asn Cys Ile Asn Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140 Arg Ser Glu Glu Leu Asn Leu Val Ile Ile Gly Pro Ser Ala Asp Ile 145 150 155 160 Ile Gln Phe Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175 Arg Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185 190 Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu 195 200 205 Gly Ala Gly Lys Phe Ala Thr Asp Pro Ala Val Thr Leu Ala His Glu 210 215 220 Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala Ile Asn Pro Asn 225 230 235 240 Arg Val Phe Lys Val Asn Thr Asn Ala Tyr Tyr Glu Met Ser Gly Leu 245 250 255 Glu Val Ser Phe Glu Glu Leu Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270 Phe Ile Asp Ser Leu Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285 Lys Phe Lys Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300 Gly Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys 305 310 315 320 Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys Leu 325 330 335

Page 59

Lys Phe Asp Lys 340 Leu Tyr 002806-084952Lys Met Leu Thr Glu 345 PCT_SL.txt Ile Tyr Thr 350 Glu Asp Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg Lys Thr Tyr Leu Asn 355 360 365 Phe Asp Lys Ala Val Phe Lys Ile Asn Ile Val Pro Lys Val Asn Tyr 370 375 380 Thr Ile Tyr Asp Gly Phe Asn Leu Arg Asn Thr Asn Leu Ala Ala Asn 385 390 395 400 Phe Asn Gly Gln Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415 Lys Asn Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys Val Arg 420 425 430 Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu Asp Lys Gly Tyr Asn Lys 435 440 445 Ala Leu Asn Asp Leu Cys Ile Lys Val Asn Asn Trp Asp Leu Phe Phe 450 455 460 Ser Pro Ser Glu Asp Asn Phe Thr Asn Asp Leu Asn Lys Gly Glu Glu 465 470 475 480 Ile Thr Ser Asp Thr Asn Ile Glu Ala Ala Glu Glu Asn Ile Ser Leu 485 490 495 Asp Leu Ile Gln Gln Tyr Tyr Leu Thr Phe Asn Phe Asp Asn Glu Pro 500 505 510 Glu Asn Ile Ser Ile Glu Asn Leu Ser Ser Asp Ile Ile Gly Gln Leu 515 520 525 Glu Leu Met Pro Asn Ile Glu Arg Phe Pro Asn Gly Lys Lys Tyr Glu 530 535 540 Leu Asp Lys Tyr Thr Met Phe His Tyr Leu Arg Ala Gln Glu Phe Glu 545 550 555 560 His Gly Lys Ser Arg Ile Ala Leu Thr Asn Ser Val Asn Glu Ala Leu 565 570 575 Leu Asn Pro Ser Arg Val Tyr Thr Phe Phe Ser Ser Asp Tyr Val Lys 580 585 590

Page 60

002806-084952-PCT_SL.txt

Lys Val Asn 595 Lys Ala Thr Glu Ala 600 Ala Met Phe Leu Gly 605 Trp Val Glu Gln Leu Val Tyr Asp Phe Thr Asp Glu Thr Ser Glu Val Ser Thr Thr 610 615 620 Asp Lys Ile Ala Asp Ile Thr Ile Ile Ile Pro Tyr Ile Gly Pro Ala 625 630 635 640 Leu Asn Ile Gly Asn Met Leu Tyr Lys Asp Asp Phe Val Gly Ala Leu 645 650 655 Ile Phe Ser Gly Ala Val Ile Leu Leu Glu Phe Ile Pro Glu Ile Ala 660 665 670 Ile Pro Val Leu Gly Thr Phe Ala Leu Val Ser Tyr Ile Ala Asn Lys 675 680 685 Val Leu Thr Val Gln Thr Ile Asp Asn Ala Leu Ser Lys Arg Asn Glu 690 695 700 Lys Trp Asp Glu Val Tyr Lys Tyr Ile Val Thr Asn Trp Leu Ala Lys 705 710 715 720 Val Asn Thr Gln Ile Asp Leu Ile Arg Lys Lys Met Lys Glu Ala Leu 725 730 735 Glu Asn Gln Ala Glu Ala Thr Lys Ala Ile Ile Asn Tyr Gln Tyr Asn 740 745 750 Gln Tyr Thr Glu Glu Glu Lys Asn Asn Ile Asn Phe Asn Ile Asp Asp 755 760 765 Leu Ser Ser Lys Leu Asn Glu Ser Ile Asn Lys Ala Met Ile Asn Ile 770 775 780 Asn Lys Phe Leu Asn Gln Cys Ser Val Ser Tyr Leu Met Asn Ser Met 785 790 795 800 Ile Pro Tyr Gly Val Lys Arg Leu Glu Asp Phe Asp Ala Ser Leu Lys 805 810 815 Asp Ala Leu Leu Lys Tyr Ile Tyr Asp Asn Arg Gly Thr Leu Ile Gly 820 825 830 Gln Val Asp Arg Leu Lys Asp Lys Val Asn 835 840

Page 61

002806-084952-PCT_SL.txt <210> 31 <211> 863 <212> PRT <213> Clostridium botulinum <400> 31

Met 1 Pro Val Thr Ile 5 Asn Asn Phe Asn Tyr Asn Asp 10 Pro Ile Asp 15 Asn Asn Asn Ile Ile Met Met Glu Pro Pro Phe Ala Arg Gly Thr Gly Arg 20 25 30 Tyr Tyr Lys Ala Phe Lys Ile Thr Asp Arg Ile Trp Ile Ile Pro Glu 35 40 45 Arg Tyr Thr Phe Gly Tyr Lys Pro Glu Asp Phe Asn Lys Ser Ser Gly 50 55 60 Ile Phe Asn Arg Asp Val Cys Glu Tyr Tyr Asp Pro Asp Tyr Leu Asn 65 70 75 80 Thr Asn Asp Lys Lys Asn Ile Phe Leu Gln Thr Met Ile Lys Leu Phe 85 90 95 Asn Arg Ile Lys Ser Lys Pro Leu Gly Glu Lys Leu Leu Glu Met Ile 100 105 110 Ile Asn Gly Ile Pro Tyr Leu Gly Asp Arg Arg Val Pro Leu Glu Glu 115 120 125 Phe Asn Thr Asn Ile Ala Ser Val Thr Val Asn Lys Leu Ile Ser Asn 130 135 140 Pro Gly Glu Val Glu Arg Lys Lys Gly Ile Phe Ala Asn Leu Ile Ile 145 150 155 160 Phe Gly Pro Gly Pro Val Leu Asn Glu Asn Glu Thr Ile Asp Ile Gly 165 170 175 Ile Gln Asn His Phe Ala Ser Arg Glu Gly Phe Gly Gly Ile Met Gln 180 185 190 Met Lys Phe Cys Pro Glu Tyr Val Ser Val Phe Asn Asn Val Gln Glu 195 200 205 Asn Lys Gly Ala Ser Ile Phe Asn Arg Arg Gly Tyr Phe Ser Asp Pro 210 215 220

Page 62

002806-084952-PCT_SL.txt

Ala 225 Leu Ile Leu Met His 230 Glu Leu Ile His Val 235 Leu His Gly Leu Tyr 240 Gly Ile Lys Val Asp Asp Leu Pro Ile Val Pro Asn Glu Lys Lys Phe 245 250 255 Phe Met Gln Ser Thr Asp Ala Ile Gln Ala Glu Glu Leu Tyr Thr Phe 260 265 270 Gly Gly Gln Asp Pro Ser Ile Ile Thr Pro Ser Thr Asp Lys Ser Ile 275 280 285 Tyr Asp Lys Val Leu Gln Asn Phe Arg Gly Ile Val Asp Arg Leu Asn 290 295 300 Lys Val Leu Val Cys Ile Ser Asp Pro Asn Ile Asn Ile Asn Ile Tyr 305 310 315 320 Lys Asn Lys Phe Lys Asp Lys Tyr Lys Phe Val Glu Asp Ser Glu Gly 325 330 335 Lys Tyr Ser Ile Asp Val Glu Ser Phe Asp Lys Leu Tyr Lys Ser Leu 340 345 350 Met Phe Gly Phe Thr Glu Thr Asn Ile Ala Glu Asn Tyr Lys Ile Lys 355 360 365 Thr Arg Ala Ser Tyr Phe Ser Asp Ser Leu Pro Pro Val Lys Ile Lys 370 375 380 Asn Leu Leu Asp Asn Glu Ile Tyr Thr Ile Glu Glu Gly Phe Asn Ile 385 390 395 400 Ser Asp Lys Asp Met Glu Lys Glu Tyr Arg Gly Gln Asn Lys Ala Ile 405 410 415 Asn Lys Gln Ala Tyr Glu Glu Ile Ser Lys Glu His Leu Ala Val Tyr 420 425 430 Lys Ile Gln Met Cys Lys Ser Val Lys Ala Pro Gly Ile Cys Ile Asp 435 440 445 Val Asp Asn Glu Asp Leu Phe Phe Ile Ala Asp Lys Asn Ser Phe Ser 450 455 460 Asp Asp Leu Ser Lys Asn Glu Arg Ile Glu Tyr Asn Thr Gln Ser Asn 465 470 475 480 Page 63

002806-084952-PCT_SL.txt

Tyr Ile Glu Asn Asp 485 Phe Pro Ile Asn Glu 490 Leu Ile Leu Asp Thr 495 Asp Leu Ile Ser Lys Ile Glu Leu Pro Ser Glu Asn Thr Glu Ser Leu Thr 500 505 510 Asp Phe Asn Val Asp Val Pro Val Tyr Glu Lys Gln Pro Ala Ile Lys 515 520 525 Lys Ile Phe Thr Asp Glu Asn Thr Ile Phe Gln Tyr Leu Tyr Ser Gln 530 535 540 Thr Phe Pro Leu Asp Ile Arg Asp Ile Ser Leu Thr Ser Ser Phe Asp 545 550 555 560 Asp Ala Leu Leu Phe Ser Asn Lys Val Tyr Ser Phe Phe Ser Met Asp 565 570 575 Tyr Ile Lys Thr Ala Asn Lys Val Val Glu Ala Gly Leu Phe Ala Gly 580 585 590 Trp Val Lys Gln Ile Val Asn Asp Phe Val Ile Glu Ala Asn Lys Ser 595 600 605 Asn Thr Met Asp Lys Ile Ala Asp Ile Ser Leu Ile Val Pro Tyr Ile 610 615 620 Gly Leu Ala Leu Asn Val Gly Asn Glu Thr Ala Lys Gly Asn Phe Glu 625 630 635 640 Asn Ala Phe Glu Ile Ala Gly Ala Ser Ile Leu Leu Glu Phe Ile Pro 645 650 655 Glu Leu Leu Ile Pro Val Val Gly Ala Phe Leu Leu Glu Ser Tyr Ile 660 665 670 Asp Asn Lys Asn Lys Ile Ile Lys Thr Ile Asp Asn Ala Leu Thr Lys 675 680 685 Arg Asn Glu Lys Trp Ser Asp Met Tyr Gly Leu Ile Val Ala Gln Trp 690 695 700 Leu Ser Thr Val Asn Thr Gln Phe Tyr Thr Ile Lys Glu Gly Met Tyr 705 710 715 720 Lys Ala Leu Asn Tyr Gln Ala Gln Ala Leu Glu Glu Ile Ile Lys Tyr

Page 64

725 002806 -084952- 730 PCT_SL.txt 735 Arg Tyr Asn Ile Tyr Ser Glu Lys Glu Lys Ser Asn Ile Asn Ile Asp 740 745 750 Phe Asn Asp Ile Asn Ser Lys Leu Asn Glu Gly Ile Asn Gln Ala Ile 755 760 765 Asp Asn Ile Asn Asn Phe Ile Asn Gly Cys Ser Val Ser Tyr Leu Met 770 775 780 Lys Lys Met Ile Pro Leu Ala Val Glu Lys Leu Leu Asp Phe Asp Asn 785 790 795 800 Thr Leu Lys Lys Asn Leu Leu Asn Tyr Ile Asp Glu Asn Lys Leu Tyr 805 810 815 Leu Ile Gly Ser Ala Glu Tyr Glu Lys Ser Lys Val Asn Lys Tyr Leu 820 825 830 Lys Thr Ile Met Pro Phe Asp Leu Ser Ile Tyr Thr Asn Asp Thr Ile 835 840 845 Leu Ile Glu Met Phe Asn Lys Tyr Asn Ser Glu Ile Leu Asn Asn 850 855 860

<210> 32 <211> 4 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 32

Ser Ser Ser Arg <210> 33 <211> 4 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 33

Ser Ser Ser Ser

Page 65

002806-084952-PCT_SL.txt <210> 34 <211> 29 <212> PRT <213> Bacillus anthracis <400> 34

Met Lys Lys Arg Lys Val Leu Ile Pro Leu Met Ala Leu Ser Thr Ile 1 5 10 15 Leu Val Ser Ser Thr Gly Asn Leu Glu Val Ile Gln Ala

20 25 <210> 35 <211> 141 <212> PRT <213> Bacillus anthracis <400> 35

Arg 1 Phe His Tyr Asp Arg Asn Asn 5 Ile Ala Val 10 Gly Ala Asp Glu 15 Ser Val Val Lys Glu Ala His Arg Glu Val Ile Asn Ser Ser Thr Glu Gly 20 25 30 Leu Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr 35 40 45 Ile Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu Val Ile Asn Asp 50 55 60 Arg Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln Asp Gly Lys Thr 65 70 75 80 Phe Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro Leu Tyr Ile Ser 85 90 95 Asn Pro Asn Tyr Lys Val Asn Val Tyr Ala Val Thr Lys Glu Asn Thr 100 105 110 Ile Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys 115 120 125 Lys Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile Gly

130 135 140 <210> 36 <211> 141 <212> PRT <213> Bacillus anthracis <400> 36

Arg Phe His Tyr Asp Arg Asn Asn Ile Ala Val Gly Ala Asp Glu Ser Page 66

1 5 002806-084952- 10 PCT_SL.txt 15 Val Val Lys Glu Ala His Arg Glu Val Ile Asn Ser Ser Thr Glu Gly 20 25 30 Leu Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr 35 40 45 Ile Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu Val Ile Asn Asp 50 55 60 Arg Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln Asp Gly Lys Thr 65 70 75 80 Phe Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro Leu Tyr Ile Ser 85 90 95 Asn Pro Asn Tyr Lys Val Asn Val Tyr Ala Val Thr Lys Glu Asn Thr 100 105 110 Ile Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys 115 120 125 Lys Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile Gly

130 135 140 <210> 37 <211> 140 <212> PRT <213> Bacillus anthracis <400> 37

Phe 1 His Tyr Asp Arg 5 Asn Asn Ile Ala Val 10 Gly Ala Asp Glu Ser 15 Val Val Lys Glu Ala His Arg Glu Val Ile Asn Ser Ser Thr Glu Gly Leu 20 25 30 Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr Ile 35 40 45 Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu Val Ile Asn Asp Arg 50 55 60 Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln Asp Gly Lys Thr Phe 65 70 75 80 Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro Leu Tyr Ile Ser Asn 85 90 95

Page 67

002806-084952-PCT_SL.txt

Pro Asn Tyr Lys 100 Val Asn Val Tyr Ala Val 105 Thr Lys Glu Asn 110 Thr Ile Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys Lys 115 120 125 Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile Gly

130 135 140 <210> 38 <211> 140 <212> PRT <213> Bacillus anthracis <400> 38

Phe 1 His Tyr Asp Arg Asn 5 Asn Ile Ala Val 10 Gly Ala Asp Glu Ser 15 Val Val Lys Glu Ala His Arg Glu Val Ile Asn Ser Ser Thr Glu Gly Leu 20 25 30 Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr Ile 35 40 45 Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu Val Ile Asn Asp Arg 50 55 60 Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln Asp Gly Lys Thr Phe 65 70 75 80 Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro Leu Tyr Ile Ser Asn 85 90 95 Pro Asn Tyr Lys Val Asn Val Tyr Ala Val Thr Lys Glu Asn Thr Ile 100 105 110 Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys Lys 115 120 125 Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile Gly

130 135 140 <210> 39 <211> 85 <212> PRT <213> Bacillus anthracis <400> 39

Gly Leu Lys Glu Val Ile Asn Asp Arg Tyr Asp Met Leu Asn Ile Ser Page 68

002806-084952-PCT_SL.txt

1 5 10 15 Ser Leu Arg Gln Asp Gly Lys Thr Phe Ile Asp Phe Lys Lys Tyr Asn 20 25 30 Asp Lys Leu Pro Leu Tyr Ile Ser Asn Pro Asn Tyr Lys Val Asn Val 35 40 45 Tyr Ala Val Thr Lys Glu Asn Thr Ile Ile Asn Pro Ser Glu Asn Gly 50 55 60 Asp Thr Ser Thr Asn Gly Ile Lys Lys Ile Leu Ile Phe Ser Lys Lys 65 70 75 80 Gly Tyr Glu Ile Gly

<210> 40 <211> 85 <212> PRT <213> Bacillus anthracis <400> 40

Gly 1 Leu Lys Glu Val 5 Ile Asn Asp Arg Tyr 10 Asp Met Leu Asn Ile 15 Ser Ser Leu Arg Gln Asp Gly Lys Thr Phe Ile Asp Phe Lys Lys Tyr Asn 20 25 30 Asp Lys Leu Pro Leu Tyr Ile Ser Asn Pro Asn Tyr Lys Val Asn Val 35 40 45 Tyr Ala Val Thr Lys Glu Asn Thr Ile Ile Asn Pro Ser Glu Asn Gly 50 55 60 Asp Thr Ser Thr Asn Gly Ile Lys Lys Ile Leu Ile Phe Ser Lys Lys 65 70 75 80 Gly Tyr Glu Ile Gly

<210> 41 <211> 55 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic polypeptide <400> 41

Page 69

002806-084952-PCT_SL.txt

Phe His Tyr Asp Arg Asn Asn Ile 1 5 Val Lys Glu Ala His Arg Glu Val 20 Leu Leu Asn Ile Asp Lys Asp Ile 35 40 Val Glu Ile Glu Asp Thr Glu 50 55

Ala Val 10 Gly Ala Asp Glu Ser 15 Val Ile Asn Ser Ser Thr Glu Gly Leu 25 30 Arg Lys Ile Leu Ser Gly Tyr Ile

<210> 42 <211> 7 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial peptide <400> 42

Val Glu Ile Glu Asp Thr Glu 1 5

Sequence: Synthetic <210> 43 <211> 18 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial peptide <400> 43

Lys Asp Ile Arg Lys Ile Leu Ser 1 5

Sequence: Synthetic

Gly Tyr Ile Val Glu Ile Glu Asp 10 15

Thr Glu <210> 44 <211> 28 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial peptide <400> 44

Ser Thr Glu Gly Leu Leu Leu Asn 1 5

Sequence: Synthetic

Ile Asp Lys Asp Ile Arg Lys Ile 10 15

Leu Ser Gly Tyr Ile Val Glu Ile

Glu Asp Thr Glu Page 70

002806-084952-PCT_SL.txt <210> 45 <211> 46 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial polypeptide

Sequence: Synthetic

<400> 45 Val Val Val 1 Gly Ala Asp Glu Ser 5 Asn Ser Ser Thr 20 Glu Gly Leu Leu Lys Ile Leu 35 Ser Gly Tyr Ile Val 40

Lys Glu 10 Ala His Arg Glu Val 15 Ile Leu Asn Ile Asp Lys Asp Ile Arg 25 30 Glu Ile Glu Asp Thr Glu

<210> 46 <211> 140 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial polypeptide

Sequence: Synthetic

<400> 46 Phe 1 His Tyr Asp Arg 5 Asn Asn Ile Val Lys Glu Ala 20 His Arg Glu Val Leu Leu Asn 35 Ile Asp Lys Asp Ile 40 Val Glu 50 Ile Glu Asp Thr Glu 55 Gly Tyr 65 Asp Met Leu Asn Ile 70 Ser Ser Ile Asp Phe Lys Lys 85 Tyr Asn Asp Pro Asn Tyr Lys 100 Val Asn Val Tyr

Ala Val 10 Gly Ala Asp Glu Ser 15 Val Ile 25 Asn Ser Ser Thr Glu 30 Gly Leu Arg Lys Ile Leu Ser 45 Gly Tyr Ile Leu Lys Glu Val 60 Ile Asn Asp Arg Leu Arg Gln 75 Asp Gly Lys Thr Phe 80 Lys Leu 90 Pro Leu Tyr Ile Ser 95 Asn Ala 105 Val Thr Lys Glu Asn 110 Thr Ile

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Ile Asn Pro 115 Ser Glu Asn Gly Asp 120 Ile Leu Ile Phe Ser Lys Lys Gly 130 135

Thr Ser Thr Asn Gly Ile Lys Lys 125

Tyr Glu Ile Gly 140 <210> 47 <211> 92 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial polypeptide

Sequence: Synthetic

<400> 47 Asp 5 Thr Glu Gly Val 1 Glu Ile Glu Tyr Asp Met Leu 20 Asn Ile Ser Ser Ile Asp Phe 35 Lys Lys Tyr Asn Asp 40 Pro Asn 50 Tyr Lys Val Asn Val 55 Tyr Ile 65 Asn Pro Ser Glu Asn 70 Gly Asp Ile Leu Ile Phe Ser 85 Lys Lys Gly

Leu Lys 10 Glu Val Ile Asn Asp Arg 15 Leu 25 Arg Gln Asp Gly Lys 30 Thr Phe Lys Leu Pro Leu Tyr 45 Ile Ser Asn Ala Val Thr Lys 60 Glu Asn Thr Ile Thr Ser Thr 75 Asn Gly Ile Lys Lys 80 Tyr Glu 90 Ile Gly

<210> 48 <211> 103 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial polypeptide

Sequence: Synthetic

<400> 48 Lys Asp Ile Arg Lys Ile Leu Ser 1 5 Thr Glu Gly Leu 20 Lys Glu Val Ile Ile Ser Ser 35 Leu Arg Gln Asp Gly 40

Gly Tyr 10 Ile Val Glu Ile Glu 15 Asp Asn Asp Arg Tyr Asp Met Leu Asn 25 30 Lys Thr Phe Ile Asp Phe Lys Lys

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Tyr Asn Asp 50 Lys Leu Pro Leu 55 Tyr Ile Ser Asn Pro 60 Asn Tyr Lys Val Asn Val Tyr Ala Val Thr Lys Glu Asn Thr Ile Ile Asn Pro Ser Glu 65 70 75 80 Asn Gly Asp Thr Ser Thr Asn Gly Ile Lys Lys Ile Leu Ile Phe Ser 85 90 95 Lys Lys Gly Tyr Glu Ile Gly

100 <210> 49 <211> 113 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic polypeptide

<400> 49 Leu 5 Leu Leu Asn Ile Asp 10 Lys Asp Ile Arg Lys 15 Ile Ser 1 Thr Glu Gly Leu Ser Gly Tyr Ile Val Glu Ile Glu Asp Thr Glu Gly Leu Lys Glu 20 25 30 Val Ile Asn Asp Arg Tyr Asp Met Leu Asn Ile Ser Ser Leu Arg Gln 35 40 45 Asp Gly Lys Thr Phe Ile Asp Phe Lys Lys Tyr Asn Asp Lys Leu Pro 50 55 60 Leu Tyr Ile Ser Asn Pro Asn Tyr Lys Val Asn Val Tyr Ala Val Thr 65 70 75 80 Lys Glu Asn Thr Ile Ile Asn Pro Ser Glu Asn Gly Asp Thr Ser Thr 85 90 95 Asn Gly Ile Lys Lys Ile Leu Ile Phe Ser Lys Lys Gly Tyr Glu Ile 100 105 110

Gly <210> 50 <211> 131 <212> PRT <213> Artificial Sequence

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002806-084952-PCT_SL.txt <220>

<223> Description of Artificial Sequence: Synthetic polypeptide <400> 50

Val 1 Gly Ala Asp Glu 5 Ser Val Val Lys Glu Ala 10 His Arg Glu Val 15 Ile Asn Ser Ser Thr Glu Gly Leu Leu Leu Asn Ile Asp Lys Asp Ile Arg 20 25 30 Lys Ile Leu Ser Gly Tyr Ile Val Glu Ile Glu Asp Thr Glu Gly Leu 35 40 45 Lys Glu Val Ile Asn Asp Arg Tyr Asp Met Leu Asn Ile Ser Ser Leu 50 55 60 Arg Gln Asp Gly Lys Thr Phe Ile Asp Phe Lys Lys Tyr Asn Asp Lys 65 70 75 80 Leu Pro Leu Tyr Ile Ser Asn Pro Asn Tyr Lys Val Asn Val Tyr Ala 85 90 95 Val Thr Lys Glu Asn Thr Ile Ile Asn Pro Ser Glu Asn Gly Asp Thr 100 105 110 Ser Thr Asn Gly Ile Lys Lys Ile Leu Ile Phe Ser Lys Lys Gly Tyr 115 120 125

Glu Ile Gly 130

<210> <211> <212> <213> 51 27 PRT Conu s sp. <220> <221> MOD RES <222> (4). .(4) <223> Hyp <220> <221> MOD_ RES <222> (10) ..(10) <223> Hyp <220> <221> MOD_ RES <222> (21) ..(21) <223> Hyp

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002806-084952-PCT_SL.txt

<400> 51 Cys Lys Ser 1 Xaa Gly 5 Ser Ser Cys Ser Xaa 10 Thr Ser Tyr Asn Cys 15 Cys Arg Ser Cys Asn 20 Xaa Tyr Thr Lys Arg 25 Cys Tyr <210> 52 <211> 26 <212> PRT <213> Conus sp. <400> 52 Cys Lys Gly 1 Lys Gly 5 Ala Pro Cys Arg Lys 10 Thr Met Tyr Asp Cys 15 Cys Ser Gly Ser Cys 20 Gly Arg Arg Gly Lys 25 Cys

<210> 53 <211> 48 <212> PRT <213> Unknown <220>

<223> Description of Unknown:

Omega-Agatoxin IVA polypeptide

<400> 53 Lys 1 Lys Lys Cys Ile Ala Lys Asp Tyr Gly Arg Cys Lys Trp Gly Gly 15 5 10 Thr Pro Cys Cys Arg Gly Arg Gly Cys Ile Cys Ser Ile Met Gly Thr 20 25 30 Asn Cys Glu Cys Lys Pro Arg Leu Ile Met Glu Gly Leu Gly Leu Ala 35 40 45

<210> 54 <211> 48 <212> PRT <213> Unknown <220>

<223> Description of Unknown:

Omega-Agatoxin TK polypeptide

<400> 54 Glu Asp Asn Cys Ile Ala Glu Asp Tyr Gly Lys Cys Thr Trp Gly Gly 1 5 10 15 Thr Lys Cys Cys Arg Gly Arg Pro Cys Arg Cys Ser Met Ile Gly Thr 20 25 30

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Asn Cys Glu Cys Thr Pro Arg Leu Ile Met Glu Gly Leu Ser Phe Ala 35 40 45 <210> 55 <211> 35 <212> PRT <213> Unknown <220>

<223> Description of Unknown:

Chinese bird spider polypeptide <400> 55

Glu 1 Cys Leu Glu Ile 5 Phe Lys Ala Cys Asn 10 Pro Ser Asn Asp Gln 15 Cys Cys Lys Ser Ser Lys Leu Val Cys Ser Arg Lys Thr Arg Trp Cys Lys 20 25 30

Tyr Gln Ile 35 <210> 56 <211> 30 <212> PRT <213> Pseudomonas aeruginosa <400> 56

Tyr 1 Cys Gln Lys Trp 5 Met Trp Thr Cys Asp Ser Glu Arg Lys Cys Cys 10 15 Glu Gly Met Val Cys Arg Leu Trp Cys Lys Lys Lys Leu Trp 20 25 30

<210> 57 <211> 24 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <220>

<221> MISC_FEATURE <222> (1)..(24) <223> This sequence may encompass 1-8 'Gly Gly Ser' repeating units wherein some positions may be absent <220>

<223> See specification as filed for detailed description of substitutions and preferred embodiments <400> 57

Gly Gly Ser Gly Gly Ser Gly Gly Ser Gly Gly Ser Gly Gly Ser Gly 1 5 10 15

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002806-084952-PCT_SL.txt

Gly Ser Gly Gly Ser Gly Gly Ser 20 <210> 58 <211> 6 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 58

Gly Gly Ser Gly Gly Ser

1 5 <210> 59 <211> 6 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 59

Lys Lys Lys Lys Lys Lys

1 5 <210> 60 <211> 8 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 60

Lys Lys Lys Lys Lys Lys Lys Lys

1 5 <210> 61 <211> 6 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 61

His His His His His His

1 5 <210> 62

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002806-084952-PCT_SL.txt <211> 8 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 62

His His His His His His His His

1 5 <210> 63 <211> 6 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 63

Arg Arg Arg Arg Arg Arg

1 5 <210> 64 <211> 8 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 64

Arg Arg Arg Arg Arg Arg Arg Arg

1 5 <210> 65 <211> 55 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic polypeptide <400> 65

Phe 1 His Tyr Asp Arg 5 Asn Asn Ile Ala Val 10 Gly Ala Asp Glu Ser 15 Val Val Lys Glu Ala His Arg Glu Val Ile Asn Ser Ser Thr Glu Gly Leu 20 25 30 Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr Ile

35 40 45

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002806-084952-PCT_SL.txt

Val Glu Ile Glu Asp Thr Glu 50 55 <210> 66 <211> 7 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 66

Val Glu Ile Glu Asp Thr Glu

1 5 <210> 67 <211> 18 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 67

Lys Asp Ile Arg Lys Ile Leu Ser Gly Tyr Ile Val Glu Ile Glu Asp 1 5 10 15

Thr Glu <210> 68 <211> 28 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide <400> 68

Ser 1 Thr Glu Gly Leu 5 Leu Leu Asn Ile Asp Lys Asp Ile Arg Lys Ile 10 15 Leu Ser Gly Tyr Ile Val Glu Ile Glu Asp Thr Glu 20 25

<210> 69 <211> 14 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic peptide

Page 79

002806-084952-PCT_SL.txt <400> 69

Glu Val Lys Gln Glu Asn Arg Leu Leu Asn Glu Ser Glu Ser 1 5 10 <210> 70 <211> 46 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic polypeptide <400> 70

Val 1 Gly Ala Asp Glu 5 Ser Val Val Lys Glu Ala 10 His Arg Glu Val 15 Ile Asn Ser Ser Thr Glu Gly Leu Leu Leu Asn Ile Asp Lys Asp Ile Arg 20 25 30 Lys Ile Leu Ser Gly Tyr Ile Val Glu Ile Glu Asp Thr Glu 35 40 45

<210> 71 <211> 7 <212> PRT <213> Clostridium botulinum <400> 71

Glu Ala Asn Gln Arg Ala Thr 1 5 <210> 72 <211> 7 <212> PRT <213> Clostridium botulinum <400> 72

Gly Ala Ser Gln Phe Glu Thr 1 5 <210> 73 <211> 7 <212> PRT <213> Clostridium botulinum <400> 73

Ala Asn Gln Arg Ala Thr Lys 1 5 <210> 74 <211> 7 <212> PRT <213> Clostridium botulinum <400> 74

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002806-084952-PCT_SL.txt

Asp Thr Lys Lys Ala Val Lys 1 5

<210> 75 <211> 7 <212> PRT <213> Clostridium botulinum <400> 75 Arg Asp Gln Lys Leu Ser Glu 1 5 <210> 76 <211> 7 <212> PRT <213> Clostridium botulinum <400> 76 Gln Ile Asp Arg Ile Met Glu 1 5 <210> 77 <211> 7 <212> PRT <213> Clostridium botulinum <400> 77 Glu Arg Asp Gln Lys Leu Ser 1 5 <210> 78 <211> 7 <212> PRT <213> Clostridium botulinum <400> 78 Glu Thr Ser Ala Ala Lys Ile 1 5 <210> 79 <211> 7 <212> PRT <213> Clostridium tetani <400> 79 Gly Ala Ser Gln Phe Glu Thr 1 5 <210> 80 <211> 7 <212> PRT <213> Unknown <220> <223> Description of Unknown IgA protease peptide

Page 81

002806-084952-PCT_SL.txt <400> 80

Ser Thr Pro Pro Thr Pro Ser

1 5 <210> 81 <211> 7 <212> PRT <213> Unknown <220> <223> Description of Unknown Antarease peptide <400> 81 Ile Lys Arg Lys Tyr Trp Trp 1 5 <210> 82 <211> 7 <212> PRT <213> Clostridium botulinum <400> 82 Glu Ala Asn Gln Arg Ala Thr 1 5 <210> 83 <211> 7 <212> PRT <213> Clostridium botulinum <400> 83 Ala Asn Gln Arg Ala Thr Lys 1 5 <210> 84 <211> 7 <212> PRT <213> Clostridium botulinum <400> 84 Glu Ala Asn Gln Arg Ala Thr 1 5 <210> 85 <211> 7 <212> PRT <213> Clostridium botulinum <400> 85 Phe Ala Asn Gln Arg Ala Thr 1 5 <210> 86 <211> 7 <212> PRT <213> Clostridium botulinum

Page 82

002806-084952-PCT_SL.txt <400> 86

Glu Ala Asn Gln Arg Ala Thr 1 5 <210> 87 <211> 7 <212> PRT <213> Clostridium botulinum <400> 87

Glu Ala Asn Gln Arg Ala Ile 1 5 <210> 88 <211> 7 <212> PRT <213> Clostridium botulinum <400> 88

Glu Ala Asn Lys Ala Thr Lys 1 5 <210> 89 <211> 7 <212> PRT <213> Clostridium botulinum <400> 89

Glu Ala Asn Lys His Ala Thr 1 5 <210> 90 <211> 7 <212> PRT <213> Clostridium botulinum <400> 90

Glu Ala Asn Lys His Ala Asn 1 5 <210> 91 <211> 7 <212> PRT <213> Clostridium botulinum <400> 91

Asp Glu Ala Asn Gln Arg Ala 1 5 <210> 92 <211> 7 <212> PRT <213> Clostridium botulinum <400> 92

Glu Ala Asn Gln Arg Ala Thr

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002806-084952-PCT_SL.txt

1 5 <210> 93 <211> 7 <212> PRT <213> Clostridium botulinum <400> 93

Ala Asn Gln Arg Ala Thr Lys 1 5 <210> 94 <211> 7 <212> PRT <213> Clostridium botulinum <400> 94

Asn Gln Arg Ala Thr Lys Met 1 5 <210> 95 <211> 7 <212> PRT <213> Clostridium botulinum <400> 95

Ala Asn Gln Arg Ala Ile Lys 1 5 <210> 96 <211> 7 <212> PRT <213> Clostridium botulinum <400> 96

Ala Asn Gln Arg Ala His Gln 1 5 <210> 97 <211> 7 <212> PRT <213> Clostridium botulinum <400> 97

Asp Thr Lys Lys Ala Val Lys 1 5 <210> 98 <211> 7 <212> PRT <213> Clostridium botulinum <400> 98

Lys Thr Lys Lys Ala Val Lys 1 5

Page 84

002806-084952-PCT_SL.txt <210> 99 <211> 7 <212> PRT <213> Clostridium botulinum <400> 99

Glu Thr Lys Lys Ala Ile Lys 1 5 <210> 100 <211> 7 <212> PRT <213> Clostridium botulinum <400> 100

Glu Thr Lys Arg Ala Met Lys 1 5 <210> 101 <211> 7 <212> PRT <213> Clostridium botulinum <400> 101

Asp Thr Lys Lys Ala Val Arg 1 5 <210> 102 <211> 7 <212> PRT <213> Clostridium botulinum <400> 102

Asp Thr Lys Lys Ala Leu Lys 1 5 <210> 103 <211> 7 <212> PRT <213> Clostridium botulinum <400> 103

Asp Thr Lys Lys Ala Met Lys 1 5 <210> 104 <211> 7 <212> PRT <213> Clostridium botulinum <400> 104

Glu Ser Lys Lys Ala Val Lys 1 5 <210> 105 <211> 7 <212> PRT

Page 85

002806-084952-PCT_SL.txt <213> Clostridium botulinum <400> 105

Glu Thr Lys Lys Ala Met Lys 1 5 <210> 106 <211> 7 <212> PRT <213> Clostridium botulinum <400> 106

Glu Thr Lys Lys Ala Val Lys 1 5 <210> 107 <211> 7 <212> PRT <213> Clostridium botulinum <400> 107

Gln Ile Asp Arg Ile Met Glu 1 5 <210> 108 <211> 7 <212> PRT <213> Clostridium botulinum <400> 108

Gln Ile Gln Lys Ile Thr Glu 1 5 <210> 109 <211> 7 <212> PRT <213> Clostridium botulinum <400> 109

Gln Ile Asp Arg Ile Val Glu 1 5 <210> 110 <211> 7 <212> PRT <213> Clostridium botulinum <400> 110

Gln Phe Asp Arg Ile Met Asp 1 5 <210> 111 <211> 7 <212> PRT <213> Clostridium botulinum <400> 111

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002806-084952-PCT_SL.txt

Gln Phe Asp Arg Ile Met Glu

1 5 <210> 112 <211> 7 <212> PRT <213> Clostridium botulinum <400> 112

Gln Leu Asp Arg Ile His Asp 1 5 <210> 113 <211> 7 <212> PRT <213> Clostridium botulinum <400> 113

Gln Ile Asp Arg Ile Met Asp 1 5 <210> 114 <211> 7 <212> PRT <213> Clostridium botulinum <400> 114

Gln Val Asp Arg Ile Gln Gln 1 5 <210> 115 <211> 7 <212> PRT <213> Clostridium botulinum <400> 115

Gly Ala Ser Gln Phe Glu Thr 1 5 <210> 116 <211> 7 <212> PRT <213> Clostridium botulinum <400> 116

Ala Gly Ala Ser Gln Phe Glu 1 5 <210> 117 <211> 7 <212> PRT <213> Clostridium botulinum <400> 117

Gly Ala Ser Gln Phe Glu Ser 1 5

Page 87

002806-084952-PCT_SL.txt <210> 118 <211> 7 <212> PRT <213> Clostridium botulinum <400> 118

Gln Ala Ser Gln Phe Glu Ser 1 5 <210> 119 <211> 7 <212> PRT <213> Clostridium botulinum <400> 119

Gly Ala Ser Gln Gly Glu Thr 1 5 <210> 120 <211> 7 <212> PRT <213> Clostridium botulinum <400> 120

Gly Ala Ser Gln Phe Glu Gln 1 5 <210> 121 <211> 7 <212> PRT <213> Clostridium botulinum <400> 121

Gln Ala Ser Gln Phe Glu Ala 1 5 <210> 122 <211> 7 <212> PRT <213> Clostridium botulinum <400> 122

Gly Ala Ser Gln Phe Gln Gln 1 5 <210> 123 <211> 7 <212> PRT <213> Clostridium botulinum <400> 123

Gly Ala Ser Gln Phe Glu Ala 1 5 <210> 124 <211> 7

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002806-084952-PCT_SL.txt <212> PRT <213> Clostridium botulinum <400> 124

Arg Asp Gln Lys Leu Ser Glu

1 5 <210> 125 <211> 7 <212> PRT <213> Clostridium botulinum <400> 125

Arg Asp Gln Lys Ile Ser Glu 1 5 <210> 126 <211> 7 <212> PRT <213> Clostridium botulinum <400> 126

Lys Asp Gln Lys Leu Ala Glu 1 5 <210> 127 <211> 7 <212> PRT <213> Clostridium botulinum <400> 127

Glu Arg Asp Gln Lys Leu Ser 1 5 <210> 128 <211> 7 <212> PRT <213> Clostridium botulinum <400> 128

Val Leu Glu Arg Asp Gln Lys 1 5 <210> 129 <211> 7 <212> PRT <213> Clostridium botulinum <400> 129

Glu Arg Asp Gln Lys Ile Ser 1 5 <210> 130 <211> 7 <212> PRT <213> Clostridium botulinum

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002806-084952-PCT_SL.txt <400> 130

Glu Arg Asp Gln Ala Leu Ser 1 5 <210> 131 <211> 7 <212> PRT <213> Clostridium botulinum <400> 131

Glu Lys Asp Gln Lys Leu Ala 1 5 <210> 132 <211> 7 <212> PRT <213> Clostridium botulinum <400> 132

Glu Ser Ser Ala Ala Lys Ile 1 5 <210> 133 <211> 7 <212> PRT <213> Clostridium botulinum <400> 133

Glu Thr Ser Ala Ala Lys Ile 1 5 <210> 134 <211> 7 <212> PRT <213> Clostridium botulinum <400> 134

Glu Ser Ser Ala Ala Lys Leu 1 5 <210> 135 <211> 7 <212> PRT <213> Clostridium botulinum <400> 135

Glu Thr Ser Ala Ala Lys Leu 1 5 <210> 136 <211> 7 <212> PRT <213> Clostridium tetani <400> 136

Gly Ala Ser Gln Phe Glu Thr 1 5

Page 90

002806-084952-PCT_SL.txt <210> 137 <211> 7 <212> PRT <213> Clostridium tetani <400> 137

Gly Ala Ser Gln Gly Glu Thr 1 5 <210> 138 <211> 7 <212> PRT <213> Clostridium tetani <400> 138

Gly Ala Ser Gln Phe Glu Gln 1 5 <210> 139 <211> 7 <212> PRT <213> Clostridium tetani <400> 139

Gln Ala Ser Gln Phe Glu Ala 1 5 <210> 140 <211> 7 <212> PRT <213> Clostridium tetani <400> 140

Gly Ala Ser Gln Phe Glu Ser 1 5 <210> 141 <211> 7 <212> PRT <213> Clostridium tetani <400> 141

Gln Ala Ser Gln Phe Glu Ser 1 5 <210> 142 <211> 7 <212> PRT <213> Clostridium tetani <400> 142

Gly Ala Ser Gln Phe Gln Gln 1 5 <210> 143

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002806-084952-PCT_SL.txt

<211> 7 <212> PRT <213> Clostridium tetani <400> 143 Gly Ala Ser Gln Phe Glu Ala 1 5 <210> 144 <211> 7 <212> PRT <213> Unknown <220> <223> Description of Unknown IgA protease peptide <400> 144 Ser Thr Pro Pro Thr Pro Ser 1 5 <210> 145 <211> 7 <212> PRT <213> Unknown

<220>

<223> Description of Unknown: Antarease peptide <400> 145

Ile Lys Arg Lys Tyr Trp Trp 1 5 <210> 146 <211> 23 <212> PRT <213> Influenza virus <400> 146

Gly Leu Phe Gly Ala Ile Ala Gly Phe Ile Glu Asn Gly Trp Glu Gly 1 5 10 15

Met Ile Asp Gly Trp Tyr Gly 20 <210> 147 <211> 40 <212> PRT <213> Artificial Sequence <220>

<223> Description of Artificial Sequence: Synthetic polypeptide <220>

<221> MISC_FEATURE

Page 92

002806-084952-PCT_SL.txt <222> (1)..(40) <223> This sequence may encompass 1-8 'Gly Gly Gly Gly Ser' repeating units wherein some positions may be absent <220>

<223>

See specification substitutions and as filed for detailed description of preferred embodiments <400> 147

Gly Gly Gly Gly Ser 1 5

Gly

Gly Gly Gly Ser 10

Gly Gly

Gly Gly Ser Gly 15

Gly Gly Gly

Ser

Gly Gly Gly Gly

Ser

Gly Gly Gly Gly

Ser

Gly Gly

Gly Gly Ser Gly Gly Gly Gly Ser

35 40 <210> 148 <211> 5 <212> PRT <213> Artificial Sequence <220> <223> Description of Artificial peptide <400> 148 Gly Gly Gly Gly Ser 1 5 <210> 149 <211> 4 <212> PRT <213> Artificial Sequence <220> <223> Description of Artificial peptide

Synthetic

Synthetic <400> 149 Arg Arg Ser Ser 1

Page 93