AU2016277637B2

AU2016277637B2 - Stable and soluble antibodies

Info

Publication number: AU2016277637B2
Application number: AU2016277637A
Authority: AU
Inventors: Leonardo Borras; David Urech
Original assignee: Novartis AG
Current assignee: Novartis AG
Priority date: 2010-10-22
Filing date: 2016-12-21
Publication date: 2018-11-08
Anticipated expiration: 2031-10-24
Also published as: AU2018247355A1; AU2016277637A1

Abstract

Abstract The invention provides antibodies that are modified to reduce aggregration propensity, and methods of producing such antibodies. The present invention also provides particularly stable and soluble scFv antibodies and Fab fragments specific for TNF, which comprise specific light chain and heavy chain sequences that are optimized for stability, solubility, in vitro and in vivo binding of TNF, and low immunogenicity. The nucleic acids, vectors and host cells for expression of the recombinant antibodies of the invention, methods for isolating them and the use of said antibodies in medicine are also disclosed.

Description

The invention provides antibodies that are modified to reduce aggregration propensity, and methods of producing such antibodies. The present invention also provides particularly stable and soluble scFv antibodies and Fab fragments specific for TNF, which comprise specific light chain and heavy chain sequences that are optimized for stability, solubility, in vitro and in vivo binding of TNF, and low immunogenicity. The nucleic acids, vectors and host cells for expression of the recombinant antibodies of the invention, methods for isolating them and the use of said antibodies in medicine are also disclosed.

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STABLE AND SOLUBLE ANTIBODIES

The present application is a divisional application from Australian patent application number 2015200534, which is in turn a divisional application from Australian patent application number 2011318179, the entire disclosures of which are incorporated herein by 5 reference.

Cross-Reference to Related Applications

This application claims priority under 35 U.S.C. §119 to U.S. Provisional Patent Application Nos. 61/405,798 filed October 22, 2010, and 61/484,749 filed May 11, 2011 the 0 entire contents of which are incorporated herein by reference.

Field of the Invention

The invention relates to methods of reducing aggregation propensity of antibodies, and antibodies that are modified to reduce aggregration propensity. The invention also relates to antibodies that bind tumor necrosis factor alpha (TNFa). In particular, the invention relates to stable and soluble antibodies comprising an aggregation-reducing modification, including scFv antibodies and Fab fragments, which comprise specific light chain and heavy chain sequences that are optimized for stability, solubility, and low immunogenicity. In addition, the invention relates to methods for the diagnosis and/or

Ό treatment of TNF-mediated disorders.

Background of the Invention

Tumour necrosis factor alpha (TNFa, also known as cachectin), is a naturally occurring mammalian cytokine produced by numerous cell types, including monocytes and macrophages in response to endotoxin or other stimuli. TNFa is a major mediator of inflammatory, immunological, and pathophysiological reactions (Grell, M., et al. (1995) Cell, 83: 793-802).

Soluble TNFa is formed by the cleavage of a precursor transmembrane protein (Kriegler, et al. (1988) Cell 53: 45-53), and the secreted 17 kDa polypeptides assemble to soluble homotrimer complexes (Smith, et al. (1987), J. Biol. Chem. 262: 6951-6954; for

2016277637 21 Dec 2016 reviews of TNFA, see Butler, et al. (1986), Nature 320:584; Old (1986), Science 230: 630). These complexes then bind to receptors found on a variety of cells. Binding produces an array of pro-inflammatory effects, including (i) release of other pro-inflammatory cytokines such as interleukin (IF)-6, IF-8, and IF-1, (ii) release of matrix metalloproteinases and (iii) up 5 regulation of the expression of endothelial adhesion molecules, further amplifying the inflammatory and immune cascade by attracting leukocytes into extravascular tissues.

A large number of disorders are associated with elevated levels of TNFa, many of them of significant medical importance. TNFa has been shown to be up-regulated in a number of human diseases, including chronic diseases such as rheumatoid arthritis (RA), 0 inflammatory bowel disorders including Crohn's disease and ulcerative colitis, sepsis, congestive heart failure, asthma bronchiale and multiple sclerosis. Mice transgenic for human TNFa produce high levels of TNFa constitutively and develop a spontaneous, destructive polyarthritis resembling RA (Keffer et al. 1991, EMBO J., 10, 4025-4031). TNFa is therefore referred to as a pro-inflammatory cytokine.

TNFa is now well established as key in the pathogenesis of RA, which is a chronic, progressive and debilitating disease characterised by polyarticular joint inflammation and destruction, with systemic symptoms of fever and malaise and fatigue. RA also leads to chronic synovial inflammation, with frequent progression to articular cartilage and bone destruction. Increased levels of TNFa are found in both the synovial fluid and peripheral

Ό blood of patients suffering from RA. When TNFa blocking agents are administered to patients suffering from RA, they reduce inflammation, improve symptoms and retard joint damage (McKown et al. (1999), Arthritis Rheum. 42:1204-1208).

Physiologically, TNFa is also associated with protection from particular infections (Cerami. et al. (1988), Immunol. Today 9:28). TNFa is released by macrophages that have been activated by lipopolysaccharides of Gram-negative bacteria. As such, TNFa appears to be an endogenous mediator of central importance involved in the development and pathogenesis of endotoxic shock associated with bacterial sepsis (Michie, et al. (1989), Br. J.Surg.76:670-671.; Debets, et al. (1989), Second Vienna Shock Forum, p. 463-466; Simpson, et al. (1989) Crit. Care Clin. 5: 27-47; Waage et al. (1987). Fancet 1: 355-357;

Hammerle. et al. (1989) Second Vienna Shock Forum p. 715-718; Debets, et al. (1989), Crit.

Care Med. 17:489-497; Calandra. et al. (1990), J. Infect. Dis. 161:982-987; Revhaug et al.

(1988), Arch. Surg. 123:162-170).

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As with other organ systems, TNFa has also been shown to play a key role in the central nervous system, in particular in inflammatory and autoimmune disorders of the nervous system, including multiple sclerosis, Guillain-Barre syndrome and myasthenia gravis, and in degenerative disorders of the nervous system, including Alzheimer's disease, 5 Parkinson's disease and Huntington's disease. TNFa is also involved in disorders of related systems of the retina and of muscle, including optic neuritis, macular degeneration, diabetic retinopathy, dermatomyositis, amyotrophic lateral sclerosis, and muscular dystrophy, as well as in injuries to the nervous system, including traumatic brain injury, acute spinal cord injury, and stroke.

Hepatitis is another TNFa-related inflammatory disorder which among other triggers can be caused by viral infections, including Epstein-Barr, cytomegalovirus, and hepatitis A-E viruses. Hepatitis causes acute liver inflammation in the portal and lobular region, followed by fibrosis and tumor progression. TNFa can also mediate cachexia in cancer, which causes most cancer morbidity and mortality (Tisdale M.J. (2004), Fangenbecks Arch Surg. 389:2995 305).

The key role played by TNFa in inflammation, cellular immune responses and the pathology of many diseases has led to the search for antagonists of TNFa. One class of TNFa antagonists designed for the treatment of TNFa-mediated diseases are antibodies or antibody fragments that specifically bind TNFa and thereby block its function. The use of anti-TNFa

Ό antibodies has shown that a blockade of TNFa can reverse effects attributed to TNFa including decreases in IL-1, GM-CSF, IL-6, IL-8, adhesion molecules and tissue destruction (Feldmann et al. (1997), Adv. Immunol. 1997:283-350). Among the specific inhibitors of TNFa that have recently become commercially available include a monoclonal, chimeric mouse-human antibody directed against TNFa (infliximab, Remicade™; Centocor

Corporation/Johnson & Johnson) has demonstrated clinical efficacy in the treatment of RA and Crohn’s disease. Despite these advances, there remains a need for new and effective forms of antibodies or other antibodies for the treatment for TNFa-associated disorders such as RA. In particular, there is an urgent need for antibodies with optimal functional properties for the effective and continuous treatment of arthritis and other TNFa-mediated disorders.

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Summary of the Invention

The invention provides antibodies comprising at least one aggregation-reducing mutation and methods for producing such antibodies.

In one aspect, the invention provides a method of reducing the propensity for aggregation of 5 an antibody, the method comprising introducing one or more aggregation-reducing modifications at a residue position participating in the interface between the variable light chain and the variable heavy chain of an antibody, wherein the substitution reduces the free energy between the variable light chain and variable heavy chain by at least 0.5 kcal/mol, thereby reducing the aggregration propensity of the modified antibody compared with that of a parental antibody that lacks the aggregaton0 reducing modification(s).

In one aspect, a method of the invention comprises introducing one or more amino acid substitutions in the interface of a variable light chain (VL) and a variable heavy chain (VH) of the antibody, wherein the one or more substitutions are at residue positions selected to reduce the free energy between the VL and VH by at least 10%, thereby reducing the aggregation propensity of the 5 antibody compared with a parental antibody. In a particular aspect, the sequence of the variable light chain of the antibody has at least 65% identity to the sequence of SEQ ID NO: 1. In other aspects, the variable heavy chain sequence has at least 85% identity to the sequence of SEQ ID NO: 3 or the sequence of SEQ ID NO: 4.

In one aspect, a method of the invention comprises an antibody that binds specifically to Ό human TNFa, comprising: a. a variable light chain comprising a sequence wherein the framework region has at least 90% identity to the sequence of SEQ ID NO: 2, wherein the variable light chain comprises CDR1, CDR2, and CDR3 of SEQ ID NO: 2 and wherein the variable light chain comprises an arginine at AHo position 50; and b. a variable heavy chain comprising a sequence wherein the framework region has at least 90% identity to the sequence of SEQ ID NO: 5, and wherein the variable heavy chain comprises CDR1, CDR2, and CDR3 of SEQ ID NO: 5.

In certain aspects, a method of the invention comprises modifying the residue at AHo position 50 and/or the residue at AHo position 47 in the variable light chain of an antibody, thereby reducing the aggregation propensity of the antibody compared with a parental antibody. In other aspects, the method of the invention further comprises modifying residues at AHo position 12, 103, and 144 of the variable heavy chain.

The invention also provides antibodies having reduced propensity for aggregration comprising one or more aggregation-reducing modifications. In certain aspects, an antibody of the invention is a Fab, Fab', a F(ab)'2, single-chain Fv (scFv), an Fv fragment , or a linear antibody. In other aspects, the invention provides a bispecific or bivalent molecule comprising an antibody of the invention.

In other aspects, the aggregation-reducing modification is at AHo position 50 of the variable light chain. In a particular aspect, the aggregation-reducing modification comprises an arginine (R) at AHo position 50 of the variable light chain. In yet another aspect, the

2016277637 16 Oct 2018

4a

2016277637 21 Dec 2016 aggregation-reducing modification comprises a substitution of lysine (K) by arginine (R) at AHo position 50 of the variable light chain.

In still other aspects, the aggregation-reducing modification is at AHo position 47 of the variable light chain. In a particular aspect, the aggregation-reducing modification 5 comprises an arginine (R) at AHo position 47 of the variable light chain. In yet another aspect, the aggregation-reducing modification comprises a substitution of lysine (K) by arginine (R) at AHo position 47 of the variable light chain.

The invention also provides stable and soluble antibodies specific for TNFa, which comprise specific light chain and heavy chain sequences that are optimized for stability, 0 solubility, in vitro and in vivo binding of TNFa, and low immunogenicity. Said antibodies are designed for the diagnosis and/or treatment of TNFa -mediated disorders. The nucleic acids, vectors and host cells for expression of the recombinant antibodies, variable light chains, and variable heavy chains of the invention, methods for isolating them and the use of said antibodies in medicine are also disclosed.

The invention also provides methods of treating a TNFa-mediated disorder comprising administering to a subject in need thereof the pharmaceutical composition comprising an anti-TNFa antibody of the invention. In certain aspects, the TNFalphamediated disorder is an ocular disorder selected from the group consisting of uveitis, Bechet’s disease, retinitis, dry eye, glaucoma, Sjorgen syndrome, diabetic neuropathy, scleritis, age

Ό related macular degeneration and keratitis.

Specific preferred embodiments of the invention will become evident from the following more detailed description of certain preferred embodiments and the claims.

Brief Description of the Drawings

Figure 1 shows titration curves of residue positions VF47 (solid lines) and VF50 (dashed lines) in two different scFv molecules, 34rFW1.4 (black) and 578rFW1.4 (gray).

Figure 2A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

Figure 2B shows stability of 34rFW1.4_VFK50R_DHP under accelerated conditions 30 determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

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Figure 3A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 40mg/ml concentration.

Figure 3B shows stability of 34rFW1.4_VFK50R_DHP under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 40mg/ml 5 concentration.

Figure 4A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml concentration.

Figure 4B shows stability of 34rFW1.4_VFK50R_DHP under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml 0 concentration.

Figure 5A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

Figure 5B shows stability of 34rFW1.4_VF_K50R under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

Figure 6A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 40mg/ml concentration.

Figure 6B shows stability of 34rFW1.4_VFK50R under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 40mg/ml

Ό concentration.

Figure 7A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml concentration.

Figure 7B shows stability of 34rFW1.4_VFK50R under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml concentration.

Figure 8A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

Figure 8B shows stability of 34rFW1.4_K47R under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 60mg/ml concentration.

2016277637 21 Dec 2016

Figure 9A shows stability of 34rFW1.4 under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml concentration.

Figure 9B shows stability of 34rFW1.4_K47R under accelerated conditions determined by SE-HPFC analysis after 2 weeks incubation at 40°C and using 20mg/ml 5 concentration.

Detailed Description of the Invention

It is a general object of the invention to provide stable and soluble antibodies having reduced propensity for aggregating in solution. In a preferred embodiment said antibody is a 0 scFv antibody or Fab fragment. The antibodies of the invention preferably comprise a light and heavy chain as disclosed herein.

The particulars shown herein are by way of example and for purposes of illustrative discussion of the preferred embodiments of the present invention only and are presented in the cause of providing what is believed to be the most useful and readily understood description of the principles and conceptual aspects of various embodiments of the invention. In this regard, no attempt is made to show structural details of the invention in more detail than is necessary for the fundamental understanding of the invention, the description taken with the drawings and/or examples making apparent to those skilled in the art how the several forms of the invention may be embodied in practice.

Ό In order that the present invention may be more readily understood, certain terms will be defined as follows. Additional definitions are set forth throughout the detailed description. The following definitions and explanations are meant and intended to be controlling in any future construction unless clearly and unambiguously modified in the following examples or when application of the meaning renders any construction meaningless or essentially meaningless. In cases where the construction of the term would render it meaningless or essentially meaningless, the definition should be taken from Webster's Dictionary, 3 Edition or a dictionary known to those of skill in the art, such as the Oxford Dictionary of Biochemistry and Molecular Biology (Ed. Anthony Smith, Oxford University Press, Oxford, 2004).

The term “antibody” as used herein includes whole antibodies and any antigen binding fragment (i.e., “antigen-binding portion,” “antigen binding polypeptide,” or “immunobinder”) or single chain thereof. An “antibody” includes a glycoprotein comprising

2016277637 21 Dec 2016 at least two heavy (H) chains and two light (L) chains inter-connected by disulfide bonds, or an antigen binding portion thereof. Each heavy chain is comprised of a heavy chain variable region (abbreviated herein as V_H) and a heavy chain constant region. The heavy chain constant region is comprised of three domains, CHI, CH2 and CH3. Each light chain is 5 comprised of a light chain variable region (abbreviated herein as V_L) and a light chain constant region. The light chain constant region is comprised of one domain, CL. The Vh and V_L regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDR), interspersed with regions that are more conserved, termed framework regions (FR). Each Vh and Vl is composed of three CDRs and 0 four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4. The variable regions of the heavy and light chains contain a binding domain that interacts with an antigen. The constant regions of the antibodies may mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (e.g., effector cells) and the first component 5 (Clq) of the classical complement system.

The term “antigen-binding portion” of an antibody (or simply “antibody portion”) refers to one or more fragments of an antibody that retain the ability to specifically bind to an antigen (e.g., TNF). It has been shown that the antigen-binding function of an antibody can be performed by fragments of a full-length antibody. Examples of binding fragments

Ό encompassed within the term “antigen-binding portion” of an antibody include (i) a Fab fragment, a monovalent fragment consisting of the Vl, Vh, CL and CHI domains; (ii) a F(ab')2 fragment, a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting of the Vh and CHI domains; (iv) a Fv fragment consisting of the Vl and Vh domains of a single arm of an antibody, (v) a single domain or dAb fragment (Ward et al., (1989) Nature 341:544-546), which consists of a V_Hdomain; and (vi) an isolated complementarity determining region (CDR) or (vii) a combination of two or more isolated CDRs which may optionally be joined by a synthetic linker. Furthermore, although the two domains of the Fv fragment, Vl and Vh, are coded for by separate genes, they can be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the V_L and V_H regions pair to form monovalent molecules (known as single chain Fv (scFv); see e.g., Bird et al. (1988) Science 242:423-426; and Huston et al. (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883). Such single chain antibodies are also intended to be encompassed within the term “antigen8

2016277637 21 Dec 2016 binding portion” of an antibody. These antibody fragments are obtained using conventional techniques known to those with skill in the art, and the fragments are screened for utility in the same manner as are intact antibodies. Antigen-binding portions can be produced by recombinant DNA techniques, or by enzymatic or chemical cleavage of intact 5 immunoglobulins. Antibodies can be of different isotype, for example, an IgG (e.g., an IgGl, IgG2, IgG3, or IgG4 subtype), IgAl, IgA2, IgD, IgE, or IgM antibody.

The term “frameworks” refers to the art recognized portions of an antibody variable region that exist between the more divergent CDR regions. Such framework regions are typically referred to as frameworks 1 through 4 (FR1, FR2, FR3, and FR4) and provide a 0 scaffold for holding, in three-dimensional space, the three CDRs found in a heavy or light chain antibody variable region, such that the CDRs can form an antigen-binding surface. Such frameworks can also be referred to as scaffolds as they provide support for the presentation of the more divergent CDRs. Other CDRs and frameworks of the immunoglobulin superfamily, such as ankyrin repeats and fibronectin, can be used as antigen 5 binding molecules (see also, for example, U.S. Patent Nos. 6,300,064, 6,815,540 and U.S. Pub. No. 20040132028).

The term “epitope” or “antigenic determinant” refers to a site on an antigen to which an immunoglobulin or antibody specifically binds (e.g., TNF). An epitope typically includes at least 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 amino acids in a unique spatial

Ό conformation. See, e.g., Epitope Mapping Protocols in Methods in Molecular Biology, Vol. 66, G. E. Morris, Ed. (1996).

The terms “specific binding,” “selective binding,” “selectively binds,” and “specifically binds,” refer to antibody binding to an epitope on a predetermined antigen. Typically, the antibody binds with an affinity (Kp>) of approximately less than 10’ M, such as approximately less than 10’⁸ Μ, 10’⁹ M or 10’^1θ M or even lower, as determined using surface plasmon resonance (SPR) technology in a BIACORE instrument.

The term “K_D,” refers to the dissociation equilibrium constant of a particular antibody-antigen interaction. In certain embodiments, some antibodies of the invention bind to TNF with a dissociation equilibrium constant (K_D) of less than approximately 10’ M, such as less than approximately 10’⁸ Μ, 10’⁹ M or 10’^1θ M or even lower, for example, as determined using surface plasmon resonance (SPR) technology in a BIACORE instrument.

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As used herein, identity refers to the sequence matching between two polypeptides, molecules or between two nucleic acids. When a position in both of the two compared sequences is occupied by the same base or amino acid monomer subunit (for instance, if a position in each of the two DNA molecules is occupied by adenine, or a position in each of 5 two polypeptides is occupied by a lysine), then the respective molecules are identical at that position. The percentage identity between two sequences is a function of the number of matching positions shared by the two sequences divided by the number of positions compared x 100. For instance, if 6 of 10 of the positions in two sequences are matched, then the two sequences have 60% identity. By way of example, the DNA sequences CTGACT 0 and CAGGTT share 50% identity (3 of the 6 total positions are matched). Generally, a comparison is made when two sequences are aligned to give maximum identity. Such alignment can be provided using, for instance, the method of Needleman et al. (1970) J. Mol. Biol. 48: 443-453, implemented conveniently by computer programs such as the Align program (DNAstar, Inc.). The percent identity between two amino acid sequences can also 5 be determined using the algorithm of E. Meyers and W. Miller (Comput. Appl. Biosci., 4:1117 (1988)) which has been incorporated into the ALIGN program (version 2.0), using a PAM 120 weight residue table, a gap length penalty of 12 and a gap penalty of 4. In addition, the percent identity between two amino acid sequences can be determined using the Needleman and Wunsch (J. Mol. Biol. 48:444-453 (1970)) algorithm which has been Ό incorporated into the GAP program in the GCG software package (available at www.gcg.com), using either a Blossum 62 matrix or a PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length weight of 1, 2, 3, 4, 5, or 6.

Similar sequences are those which, when aligned, share identical and similar amino acid residues, where similar residues are conservative substitutions for corresponding amino acid residues in an aligned reference sequence. In this regard, a conservative substitution of a residue in a reference sequence is a substitution by a residue that is physically or functionally similar to the corresponding reference residue, e.g., that has a similar size, shape, electric charge, chemical properties, including the ability to form covalent or hydrogen bonds, or the like. Thus, a conservative substitution modified sequence is one that differs from a reference sequence or a wild-type sequence in that one or more conservative substitutions are present. The percentage similarity between two sequences is a function of the number of positions that contain matching residues or conservative substitutions shared by the two sequences divided by the number of positions compared x 100. For instance, if 6

2016277637 21 Dec 2016 of 10 of the positions in two sequences are matched and 2 of 10 positions contain conservative substitutions, then the two sequences have 80% positive similarity.

As used herein, the term “conservative sequence modifications” is intended to refer to amino acid modifications that do not negatively affect or alter the binding characteristics of 5 the antibody containing the amino acid sequence. Such conservative sequence modifications include nucleotide and amino acid substitutions, additions and deletions. For example, modifications can be introduced by standard techniques known in the art, such as sitedirected mutagenesis and PCR-mediated mutagenesis. Conservative amino acid substitutions include ones in which the amino acid residue is replaced with an amino acid residue having a 0 similar side chain. Families of amino acid residues having similar side chains have been defined in the art. These families include amino acids with basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan), nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, 5 phenylalanine, methionine), beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine). Thus, a predicted nonessential amino acid residue in a particular antibody is preferably replaced with another amino acid residue from the same side chain family. Methods of identifying nucleotide and amino acid conservative substitutions which do not eliminate antigen binding are well-known Ό in the art (see, e.g., Brummell et al., Biochem. 32:1180-1187 (1993); Kobayashi et al. Protein Eng. 12(10):879-884 (1999); and Burks et al. Proc. Natl. Acad. Sci. USA94:412-417 (1997)).

Amino acid consensus sequence as used herein refers to an amino acid sequence that can be generated using a matrix of at least two, and preferably more, aligned amino acid sequences, and allowing for gaps in the alignment, such that it is possible to determine the most frequent amino acid residue at each position. The consensus sequence is that sequence which comprises the amino acids which are most frequently represented at each position. In the event that two or more amino acids are equally represented at a single position, the consensus sequence includes both or all of those amino acids.

The amino acid sequence of a protein can be analyzed at various levels. For example, conservation or variability can be exhibited at the single residue level, multiple residue level, multiple residue with gaps etc. Residues can exhibit conservation of the identical residue or can be conserved at the class level. Examples of amino acid classes include polar but uncharged R groups (Serine, Threonine, Asparagine and Glutamine); positively charged R

2016277637 21 Dec 2016 groups (Lysine, Arginine, and Histidine); negatively charged R groups (Glutamic acid and Aspartic acid); hydrophobic R groups (Alanine, Isoleucine, Leucine, Methionine, Phenylalanine, Tryptophan, Valine and Tyrosine); and special amino acids (Cysteine, Glycine and Proline). Other classes are known to one of skill in the art and may be defined 5 using structural determinations or other data to assess substitutability. In that sense, a substitutable amino acid can refer to any amino acid which can be substituted and maintain functional conservation at that position.

It will be recognized, however, that amino acids of the same class may vary in degree by their biophysical properties. For example, it will be recognized that certain hydrophobic R 0 groups (e.g., Alanine, Serine, or Threonine) are more hydrophilic (i.e., of higher hydrophilicity or lower hydrophobicity) than other hydrophobic R groups (e.g., Valine or Leucine). Relative hydrophilicity or hydrophobicity can be determined using art-recognized methods (see, e.g., Rose et al., Science, 229: 834-838 (1985) and Comette et al., J. Mol. Biol., 195: 659-685 (1987)).

As used herein, when one amino acid sequence (e.g., a first V_H or V_L sequence) is aligned with one or more additional amino acid sequences (e.g., one or more VH or VL sequences in a database), an amino acid position in one sequence (e.g., the first Vh or Vl sequence) can be compared to a “corresponding position” in the one or more additional amino acid sequences. As used herein, the “corresponding position” represents the

Ό equivalent position in the sequence(s) being compared when the sequences are optimally aligned, i.e., when the sequences are aligned to achieve the highest percent identity or percent similarity.

The term “nucleic acid molecule,” refers to DNA molecules and RNA molecules. A nucleic acid molecule may be single-stranded or double-stranded, but preferably is double25 stranded DNA. A nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence. For instance, a promoter or enhancer is operably linked to a coding sequence if it affects the transcription of the sequence. In certain embodiments, the invention provides isolated nucleic acid molecules that encode an antibody of the invention, a variable light chain of the invention, and/or a variable heavy chain of the invention. In certain embodiments, a nucleic acid molecule of the invention encodes: a polypeptide comprising a light chain variable region having at least 97% identity to SEQ ID NO: 2 or SEQ ID NO: 14; a polypeptide comprising a heavy chain variable region having at

2016277637 21 Dec 2016 least 95% identity to SEQ ID NO: 5; or an antibody having at least 96% identity to SEQ ID NO: 10 or SEQ ID NO: 17.

The term “vector,” refers to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. One type of vector is a “plasmid,” which refers to a 5 circular double stranded DNA loop into which additional DNA segments may be ligated. Another type of vector is a viral vector, wherein additional DNA segments may be ligated into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors). Other vectors (e.g., non-episomal mammalian vectors) 0 can be integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome.

The term “host cell” refers to a cell into which an expression vector has been introduced. Host cells can include bacterial, microbial, plant or animal cells. Bacteria, which are susceptible to transformation, include members of the enterobacteriaceae, such as strains of Escherichia coli or Salmonella; Bacillaceae, such as Bacillus subtilis; Pneumococcus; Streptococcus, and Haemophilus influenzae. Suitable microbes include Saccharomyces cerevisiae and Pichia pastoris. Suitable animal host cell lines include CHO (Chinese Hamster Ovary lines) and NSO cells.

The terms “treat,” “treating,” and “treatment,” refer to therapeutic or preventative

Ό measures described herein. The methods of “treatment” employ administration to a subject, in need of such treatment, an antibody of the present invention, for example, a subject having a TNFa-mediated disorder or a subject who ultimately may acquire such a disorder, in order to prevent, cure, delay, reduce the severity of, or ameliorate one or more symptoms of the disorder or recurring disorder, or in order to prolong the survival of a subject beyond that expected in the absence of such treatment.

The term “TNF-mediated disorder” refers generally to disease states and/or symptoms associated with TNF, including any disorder, the onset, progression or the persistence of the symptoms of which requires the participation of TNF. Examples of TNF-mediated disorders include, but are not limited to, age-related macular degeneration, neovascular glaucoma, diabetic retinopathy, retinopathy of prematurity, retrolental fibroplasia, breast carcinomas, lung carcinomas, gastric carcinomas, esophageal carcinomas, colorectal carcinomas, liver carcinomas, ovarian carcinomas, the comas, arrhenoblastomas, cervical carcinomas,

2016277637 21 Dec 2016 endometrial carcinoma, endometrial hyperplasia, endometriosis, fibrosarcomas, choriocarcinoma, head and neck cancer, nasopharyngeal carcinoma, laryngeal carcinomas, hepatoblastoma, Kaposi's sarcoma, melanoma, skin carcinomas, hemangioma, cavernous hemangioma, hemangioblastoma, pancreas carcinomas, retinoblastoma, astrocytoma, 5 glioblastoma, Schwannoma, oligodendroglioma, medulloblastoma, neuroblastomas, rhabdomyosarcoma, osteogenic sarcoma, leiomyosarcomas, urinary tract carcinomas, thyroid carcinomas, Wilm's tumor, renal cell carcinoma, prostate carcinoma, abnormal vascular proliferation associated with phakomatoses, edema (such as that associated with brain tumors), Meigs' syndrome, rheumatoid arthritis, psoriasis and atherosclerosis. TNF-mediated 0 disorders also include dry eye and TNFoc-related inflammatory conditions, such as ocular inflammation, allergic conjunctivitis, dermatitis, rhinitis, and asthma, for example, and include those cellular changes resulting from the activity of TNFoc that leads directly or indirectly to the TNFoc-related inflammatory condition. In addition, TNF-mediated disorders also include ocular angiogenesis, Bechet’s disease, retinitis, glaucoma, Sjorgen syndrome, 5 diabetic neuropathy, scleritis, keratitis and uveitis.

The term “effective dose” or “effective dosage” refers to an amount sufficient to achieve or at least partially achieve the desired effect. The term “therapeutically effective dose” is defined as an amount sufficient to cure or at least partially arrest the disease and its complications in a patient already suffering from the disease. Amounts effective for this use

Ό will depend upon the severity of the disorder being treated and the general state of the patient’s own immune system.

The term “subject” refers to any human or non-human animal. For example, the methods and compositions of the present invention can be used to treat a subject with a TNFmediated disorder.

The numbering systems as used herein to identify amino acid residue positions in antibody heavy and light chain variable regions corresponds to the one as defined by A. Honegger, J.Mol.Biol. 309 (2001) 657-670 (the AHo system). Conversion tables between the AHo system and the most commonly used system as defined by Kabat et al. (Kabat, E. A., et al. (1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242) are provided in A. Honegger, J.Mol.Biol. 309 (2001) 657-670.

2016277637 21 Dec 2016

As used herein, the term “aggregation” refers to the process of intermolecular interactions/associations between monomeric molecules in liquid solution leading to the formation of oligomeric species. Aggregation can be evaluated under stress conditions using accelerated stability studies in a concentrated solution. Accelerated stability studies are 5 designed to increase the rate of degradation, aggregation or chemical modifications of a compound by using extreme storage conditions. Accelerated stability studies, also known as stress studies, are typically performed at 40°C and room temperature. These stability studies provide valuable information concerning the effect of exposure to environmental conditions outside of the normal label storage conditions, also known as stress conditions. High protein 0 concentration solutions are widely used in the pharmaceutical industry. The solution behavior of proteins at high concentrations can be markedly different from that predicted based on dilute solution analysis due to thermodynamic non-ideality in these solutions. The nonideality observed in these systems is related to the protein-protein interactions (PPI). Different types of forces play a key role in determining the overall nature and extent of these 5 PPI and their relative contributions are affected by solute and solvent properties. The role of PPI is driven by these intermolecular forces to govern solution characteristics, including physical stability and protein self-association and aggregation. Concentrated solutions are those solutions where PPI affects the the proteins in solution by increasing the oligomerization rate. A concentrated solution can have, for example, a protein concentration Ό of at least 10 mg/ml.

Soluble products of this process may be detected with analytical methods, such as SEHPLC. The term “aggregation-reducing modification” as used herein refers to a modification, such as an amino acid substitution, that reduces an antibody’s propensity to aggregate in a liquid solution compared with a parental antibody as described herein. A “parental” antibody is an antibody comprising essentially the same sequence as the corresponding antibody that has aggregration-reducing modifications. For example, the parental antibody may have the same CDRs as the modified antibody, and may have the exact same sequence as the modified antibody except for residues at AHo position 47 and/or 50 in the variable light chain sequence, and may further differ at AHo positions 12, 103, and 144 in the variable heavy chain sequence. Other differences may also be present, so long as the parental antibody does not contain the aggregration-reducing modifications present in the antibody modified according to a method of the invention.

2016277637 21 Dec 2016

The term “interface” as used herein refers to the interaction between the two variable domains (heavy and light variable domains) of an antibody. The interface includes the amino acid residues that participate directly or indirectly in the interaction between the variable domains. Such interaction includes, but is not limited to, all kinds of non-bonded 5 interactions, for example van der Waals forces, hydrogen bonding, electrostatic terms, and hydrophobic interactions between the two domains.

Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can 0 be used in the practice or testing of the present invention, suitable methods and materials are described below. In case of conflict, the present specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.

Various aspects of the invention are described in further detail in the following 5 subsections. It is understood that the various embodiments, preferences and ranges may be combined at will. Further, depending of the specific embodiment, selected definitions, embodiments or ranges may not apply.

In one aspect, the present invention provides antibodies that bind TNFa and thus are suitable to block the function of TNFa in vivo.

Ό In certain embodiments, antibodies of the invention are optimized with an aggregration-reducing modification(s) relative to a parental antibody, such that an antibody of the invention has a reduced propensity to aggregate compared with a parental/unmodified antibody. Such modification(s) include amino acid substitutions of particular residues that participate in the variable light chain (VF) and variable heavy chain (VH) interface. In some embodiments, the aggregration-reducing modification comprises at least one amino acid substitution that reduces the free energy of the VF-VH interface compared with the free energy of the VF-VH interface of the parental antibody in an in silico modeling approach, as described herein. Such modifications include amino acid substitutions of particular residues that contribute to the free energy of the VF-VH interface.

In certain embodiments, an aggregation-reducing modification of the invention comprises a substitution at AHo position 50 in the VF chain. In one embodiment, the

2016277637 21 Dec 2016 substitution is an arginine (R) at AHo position 50. In another embodiment, the arginine (R) at AHo position 50 replaces a lysine (K).

In other embodiments, an aggregation-reducing modification of the invention comprises a substitution at AHo position 47 in the VL chain. In one embodiment, the substitution is an arginine (R) at AHo position 47. In another embodiment, the arginine (R) at AHo position 47 replaces a lysine (K).

The AHo numbering system is described in detail in Honegger, A. and Plhckthun, A. (2001) J Mol. Biol. 309:657-670). AHo position 50 in the variable light chain corresponds to Kabat position 42. AHo position 47 in the variable light chain corresponds to Kabat position

39. The Kabat numbering system is described further in Kabat et al. (Kabat, E. A., et al.

(1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242). ). Conversion tables between the AHo system and the most commonly used system as defined by Kabat et al are provided in A. Honegger, J.Mol.Biol. 309 (2001) 657-670.

The following conversion tables are provided for two different numbering systems used to identify amino acid residue positions in antibody heavy and light chain variable regions. The Kabat numbering system is described further in Kabat et al. (Kabat, E. A., et al. (1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242). The AHo numbering system is

Ό described further in Honegger, A. and Pluckthun, A. (2001) J. Mol. Biol. 309:657-670).

Heavy Chain Variable Region Numbering Table 1: Conversion table for the residue positions in the Heavy Chain Variable Domain

Kabat	AHo	Kabat	AHo	Kabat	AHo
1	1	44	51	87	101
2	2	45	52	88	102
3	3	46	53	89	103
4	4	47	54	90	104
5	5	48	55	91	105
6	6	49	56	92	106
7	7	50	57	93	107
*	8	51	58	94	108
8	9	52	59	95	109
9	10	52a	60	96	110
10	11	52b	61	97	111
11	12	52c	62	98	112

2016277637 21 Dec 2016

Kabat	AHo	Kabat	AHo	Kabat	AHo
12	13	*	63	99	113
13	14	53	64	100	114
14	15	54	65	100a	115
15	16	55	66	100b	116
16	17	56	67	100c	117
17	18	57	68	lOOd	118
18	19	58	69	lOOe	119
19	20	59	70	lOOf	120
20	21	60	71	100g	121
21	22	61	72	lOOh	122
22	23	62	73	lOOi	123
23	24	63	74	*	124
24	25	64	75	*	125
25	26	65	76	*	126
26	27	66	77	*	127
*	28	67	78	*	128
27	29	68	79	*	129
28	30	69	80	*	130
29	31	70	81	*	131
30	32	71	82	*	132
31	33	72	83	*	133
32	34	73	84	*	134
33	35	74	85	*	135
34	36	75	86	*	136
35	37	76	87	101	137
35a	38	77	88	102	138
35b	39	78	89	103	139
*	40	79	90	104	140
*	41	80	91	105	141
*	42	81	92	106	142
36	43	82	93	107	143
37	44	82a	94	108	144
38	45	82b	95	109	145
39	46	82b	96	110	146
40	47	83	97	111	147
41	48	84	98	112	148
42	49	85	99	113	149
43	50	86	100

Column 1, Residue position in Rabat’s numbering system. Column 2, Corresponding number in AHo’s numbering system for the position indicated in column 1. Column 3, Residue position in Rabat’s numbering system. Column 4, Corresponding number in AHo’s numbering system for the position indicated in column 3. Column 5, Residue position in Rabat’s numbering system. Column 6, Corresponding number in AHo’s numbering system for the position indicated in column 5

2016277637 21 Dec 2016

Light Chain Variable Region Numbering Table 2: Conversion table for the residue positions in the Light Chain Variable Domain

Kabat	AHo	Kabat	AHo	Kabat	AHo
1	1	43	51	83	101
2	2	44	52	84	102
3	3	45	53	85	103
4	4	46	54	86	104
5	5	47	55	87	105
6	6	48	56	88	106
7	7	49	57	89	107
8	8	50	58	90	108
9	9	*	59	91	109
10	10	*	60	92	110
11	11	*	61	93	111
12	12	*	62	94	112
13	13	*	63	95	113
14	14	*	64	95a	114
15	15	*	65	95b	115
16	16	*	66	95c	116
17	17	51	67	95d	117
18	18	52	68	95e	118
19	19	53	69	95f	119
20	20	54	70	*	120
21	21	55	71	*	121
22	22	56	72	*	122
23	23	57	73	*	123
24	24	58	74	*	124
25	25	59	75	*	125
26	26	60	76	*	126
27	27	61	77	*	127
*	28	62	78	*	128
27a	29	63	79	*	129
27b	30	64	80	*	130
27c	31	65	81	*	131
27d	32	66	82	*	132
27e	33	67	83	*	133
27f	34	68	84	*	134
*	35	*	85	*	135
28	36	*	86	*	136
29	37	69	87	96	137
30	38	70	88	97	138
31	39	71	89	98	139
32	40	72	90	99	140
33	41	73	91	100	141
34	42	74	92	101	142
35	43	75	93	102	143

Kabat	AHo	Kabat	AHo	Kabat	AHo
36	44	76	94	103	144
37	45	77	95	104	145
38	46	78	96	105	146
39	47	79	97	106	147
40	48	80	98	107	148
41	49	81	99	108	149
42	50	82	100

2016277637 21 Dec 2016

The antibodies of the invention can comprise additional modifications as desired. For 0 example, an antibody of the invention can comprise amino acid substitutions to reduce its immunogenicity in vivo according to the methods described, for example, in US Patent Application No. 12/973,968 and/or substitutions for enhancing the solubility of the antibody, as described in WO 09/155725. Thus, in one embodiment, an antibody of the invention comprises Serine (S) at heavy chain position 12 (AHo numbering); Serine (S) or Threonine (T) at heavy chain position 103 (AHo numbering) and/or Serine (S) or Threonine (T) at heavy chain position 144 (AHo numbering). Additionally, the antibody can comprise Serine (S) or Threonine (T) at heavy chain positions 97, 98 and/or 99 (AHo numbering). Preferably, the antibody comprises Serine (S) at heavy chain position 12 (AHo numbering), Threonine (T) at heavy chain position 103 (AHo numbering) and Threonine (T) at heavy chain position

144 (AHo numbering).

In one embodiment, an antibody of the invention comprises the variable light chain:

SEQ ID NO: 1

EIVMTQSPSTLSASVGDRVIITC (X) _n=i-₅₀ WYQQKPGRAPKLLIY (X) _n=i_₅₀25 GVPSRFSGSGSGAEFTLTISSLQPDDFATYYC (X) _n=i-5Q FGQGTKLTVLG

2016277637 21 Dec 2016

In a preferred embodiment, an antibody of the invention comprises the variable light chain (the CDRs are underlined):

SEQ ID NO: 2:

EIVMTQSPSTLSASVGDRVIITCQSSQSVYGNIWMAWYQQKPGRAPKLLIYQASKLA 5 SGVPSRFSGSGSGAEFTLTISSLQPDDFATYYCQGNFNTGDRYAFGQGTKLTVLG

In another embodiment, an antibody of the invention comprises the variable heavy chain:

SEQ ID NO. 3 : variable heavy chain framework

EVQLVESGGGLVQPGGSLRLSCTAS (X) _n=i-₅₀ WVRQAPGKGLEWVG (X) _n=i-₅₀

RFTISRDTSKNTVYLQMNSLRAEDTAVYYCAR (X) _n=i_₅₀ WGQGTLVTVSS

In still another embodiment, an antibody of the invention comprises the variable heavy chain framework

SEQ ID NO: 4: variable heavy chain framework

EVQLVESGGGLVQPGGSLRLSCTVS (X) _n=i-₅₀ WVRQAPGKGLEWVG (X) _n=i-₅₀RFTISKDTSKNTVYLQMNSLRAEDTAVYYCAR (X) _n=i_₅₀ WGQGTLVTVSS

In a preferred embodiment, the antibody of the invention comprises the variable heavy chain (the CDRs are underlined):

SEQ ID NO: 5:

EVQLVESGGGSVQPGGSLRLSCTASGFTISRSYWICWVRQAPGKGLEWVGCIYGDND 25 ITPLYANWAKGRFTISRDTSKNTVYLQMNSLRAEDTATYYCARLGYADYAYDLWGQG

TTVTVSS

As used herein, X residues are CDR insertion sites. X may be any naturally occurring amino acid; at least three and up to 50 amino acids can be present.

2016277637 21 Dec 2016

In one embodiment, the variable light chain framework of an antibody of the invention comprises SEQ ID NO: 1 and the variable heavy chain framework comprises SEQ ID NO: 3 or SEQ ID NO: 4.

In another embodiment, the variable light chain framework of an antibody of the 5 invention comprises a sequence having at least 65% identity, more preferably at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% identity, to SEQ ID NO: 1. Most preferably said sequence has an arginine (R) at AHo position 50. In another embodiment, said sequence has an arginine (R) at AHo position 47.

In another embodiment, the variable heavy chain framework of an antibody of the 0 invention comprises a sequence having at least 80% identity, more preferably at least 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, more preferably 99% identity, to SEQ ID No. 3. Preferably, said antibody comprises Serine (S) at heavy chain position 12 (AHo numbering), Threonine (T) at heavy chain position 103 (AHo numbering) and Threonine (T) at heavy chain position 144 (AHo numbering).

In another embodiment, the variable light chain framework of an antibody of the invention comprises a sequence having at least 97%, 98%, more preferably 99% identity, to SEQ ID NO: 2 or SEQ ID NO: 14.

In another embodiment, the variable heavy chain framework of an antibody of the invention comprises a sequence having at least 95%, 96%, 97%, 98%, more preferably 99%

Ό identity, to SEQ ID NO: 5.

In another embodiment, an antibody of the invention comprises a sequence having at least 96%, 97%, 98%, more preferably 99% identity, to SEQ ID NO: 10 or SEQ ID NO: 17.

In another embodiment, the variable light chain framework of an antibody of the invention comprises SEQ ID NO: 2 or SEQ ID NO: 14, and the variable heavy chain framework comprises SEQ ID NO: 5.

In one embodiment, antibodies and antibody fragments of the present invention are single-chain antibodies (scFv) or Fab fragments. In the case of scFv antibodies, a VF domain can be linked to a VH domain in either orientation by a flexible linker. A suitable state of the art linker consists of repeated GGGGS (SEQ ID NO: 6) amino acid sequences or variants thereof. In a preferred embodiment of the present invention a (GGGGS)4 (SEQ ID NO: 7) linker or its derivative is used, but variants of 1-3 repeats are also possible (Holliger et al.

2016277637 21 Dec 2016 (1993), Proc. Natl. Acad. Sci. USA 90:6444-6448). Other linkers that can be used for the present invention are described by Alfthan et al. (1995), Protein Eng. 8:725-731, Choi et al. (2001), Eur. J. Immunol. 31:94-106, Hu et al. (1996), Cancer Res. 56:3055-3061, Kipriyanov et al. (1999), J. Mol. Biol. 293:41-56 and Roovers et al. (2001), Cancer Immunol. 5 Immunother. 50:51-59. The arrangement can be either VL-linker-VH or VH-linker-VL, with the former orientation being the preferred one. In the case of Fab fragments, selected light chain variable domains VF are fused to the constant region of a human Ig kappa chain, while the suitable heavy chain variable domains VH are fused to the first (N-terminal) constant domain CHI of a human IgG. At the C-terminus, an inter-chain disulfide bridge is formed 0 between the two constant domains.

Thus, in one embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 8

EIVMTQSPSTLSASVGDRVIITC (X) _n=i-₅₀WYQQKPGRAPKLLIY (X) _n=i-₅₀5 GVPSRFSGSGSGTEFTLTISSLQPDDFATYYC (X) _n=i-₅₀FGQGTKLTVLG

GGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCTAS (X) _n=i-₅₀WVRQAPGKGLEWVG (X) _n=i-₅₀RFTISRDTSKNTVYLQMNS LRAEDTAVYYCAR (X) _n=i-₅₀WGQGTLVTVSS

Ό In another embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 9

EIVMTQSPSTLSASVGDRVIITC (X) _n=i-₅₀WYQQRPGKAPKLLIY (X) _n=i-₅₀GVPSRFSGSGSGTEFTLTISSLQPDDFATYYC (X) _n=i-₅₀EGQGTKLTVLG

GGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCTVS (X) _n=i-₅₀

WVRQAPGKGLEWVG (X) _n=i-₅₀RFTISKDTSKNTVYLQMNSLR AEDTAVYYCAR (X) _n=i-₅₀WGQGTLVTVSS

In a preferred embodiment, an antibody of the invention comprises the sequence:

2016277637 21 Dec 2016

SEQ ID NO: 10 (34rFW 1.4_VL_K50R_DHP):

EIVMTQSPSTLSASVGDRVIITCQSSQSVYGNIWMAWYQQKPGRAPKLLIYQASKLA SGVPSRFSGSGSGAEFTLTISSLQPDDFATYYCQGNFNTGDRYAFGQGTKLTVLGGG 5 GGSGGGGSGGGGSGGGGSEVQLVESGGGSVQPGGSLRLSCTASGFTISRSYWICWVR

QAPGKGLEWVGCIYGDNDITPLYANWAKGRFTISRDTSKNTVYLQMNSLRAEDTATY YCARLGYADYAYDLWGQGTTVTVSS

SEQ ID NO. 11: variable light chain framework of FW1.4 (KI27)

EIVMTQSPSTLSASVGDRVIITC(X)n=l-50 WYQQKPGKAPKLLIY(X)n=l-50 GVPSRFSGSGSGAEFTLTISSLQPDDFATYYC(X)n=l-50 FGQGTKLTVLG

In another embodiment, an antibody of the invention comprises the variable light chain:

SEQ ID NO. 12: substituted variable light chain framework of FW1.4

EIVMTQSPSTLSASVGDRVIITC(X)n=l-50 WYQQKPGKAPKLLIY(X)n=l-50 GVPSRFSGSGSGTEFTLTISSLQPDDFATYYC(X)n=l-50 FGQGTKLTVLG

In still another preferred embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 13

EIVMTQSPSTLSASVGDRVI ITC (X) _n=i_₅₀WYQQRPGKAPKLLIY (X) _n=i_₅₀

GVPSRFSGSGSGAEFTLTISSLQPDDFATYYC (X) _n=i-₅₀ FGQGTKLTVLG

In another embodiment, an antibody of the invention comprises the variable light chain (the CDRs are underlined):

2016277637 21 Dec 2016

SEQ ID NO: 14:

EΙλ/MTQSPSTLSASVGDRVIITCQSSQSVYGNIWMAWYQQRPGKAPKLLIYQASKLA SGVPSRFSGSGSGAEFTLTISSLQPDDFATYYCQGNFNTGDRYAFGQGTKLTVL

Thus, in one embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 15:

ΕΙλ/MTQS PS TLSASVGDRVI ITC (X) _n=i_₅₀WYQQRPGKAPKLLI Y (X) _n=i_₅₀

GVPSRFSGSGSGTEFTLTISSLQPDDFATYYC (X) _n=i-₅₀FGQGTKLTVLG

GGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCTAS (X) _n=i-₅₀WVRQAPGKGLEWVG (X) _n=i_₅₀RFTISRDTSKNTVYLQMNS

LRAEDTAVYYCAR (X) _n=i_₅₀WGQGTLVTVSS

In another embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 16:

ΕΙλ/MTQS PS TLSASVGDRVI ITC (X) _n=i_₅₀WYQQRPGKAPKLLI Y (X) _n=i_₅₀GVPSRFSGSGSGTEFTLTISSLQPDDFATYYC (X) _n=i-₅₀EGQGTKLTVLG

GGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCTVS (X) _n=i-₅₀

WVRQAPGKGLEWVG (X) _n=i_₅₀RFTISKDTSKNTVYLQMNSLR AEDTAVYYCAR (X) _n=i-₅₀WGQGTLVTVSS

In one embodiment, an antibody of the invention comprises the sequence:

SEQ ID NO: 17 (34rFWl .4_VL_K47R_DHP):

ΕΙλ/MTQS PS TLSASVGDRVI ITCQSSQSVYGNIWMAWYQQRPGKAPKLLI YQASKLA

SGVPSRFSGSGSGAEFTLTISSLQPDDFATYYCQGNFNTGDRYAFGQGTKLTVLGGG

2016277637 21 Dec 2016

GGSGGGGSGGGGSGGGGSEVQLVESGGGSVQPGGSLRLSCTASGFTISRSYWICWVR

QAPGKGLEWVGCIYGDNDITPLYANWAKGRFTISRDTSKNTVYLQMNSLRAEDTATY

YCARLGYADYAYDLWGQGTTVTVSS

In yet another embodiment, an antibody of the invention comprises the sequence:SEQ

ID NO: 18 (34rFW1.4)

EIVMTQSPSTLSASVGDRVIITCQSSQSVYGNIWMAWYQQKPGKAPKLLIYQASKLA SGVPSRFSGSGSGAEFTLTISSLQPDDFATYYCQGNFNTGDRYAFGQGTKLTVLGGG 0 GGSGGGGSGGGGSGGGGSEVQLVESGGGSVQPGGSLRLSCTASGFTISRSYWICWVR

In one embodiment, the VL of a parental antibody is or comprises SEQ ID NO: 11 or 5 SEQ ID NO: 12 or a sequence having at least 65% identity, more preferably, 80%, 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 11 or SEQ ID NO: 12. In another preferred embodiment, the VH of the parental antibody is or comprises SEQ ID NO: 3 or SEQ ID NO: 4 a sequence having at least 80% identity, more preferably, 85%, 90%,

95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 3 or SEQ ID NO: 4.

Ό An antibody of the invention that comprises an aggregation-reducing modification preferably comprises one or more CDRs from a rabbit antibody. As known in the art, rabbit CDRs are different from human or rodent CDRs: they can contain cysteine residues that become disulphide linked to the framework or form interCDR S-S bridges. Moreover, rabbit CDRs often do not belong to any previously known canonical structure.

The present invention also features bivalent and bispecific molecules comprising an anti-TNFa antibody, or a fragment thereof, of the invention. An antibody of the invention, or antigen-binding portions thereof, can be derivatized or linked to another functional molecule, e.g., another peptide or protein (e.g., another antibody or ligand for a receptor) to generate a bispecific molecule that binds to at least two different binding sites or target molecules. The antibody of the invention may be derivatized or linked to more than one other functional molecule to generate multispecific molecules that bind to more than two different binding

2016277637 21 Dec 2016 sites and/or target molecules; such multispecific molecules are also intended to be encompassed by the term “bispecific molecule” as used herein. Non-limiting examples of bispecific molecules include a diabody, a single-chain diabody, and a tandem antibody, as known to those of skill in the art.

To create a bispecific molecule of the invention, an antibody of the invention can be functionally linked (e.g., by chemical coupling, genetic fusion, noncovalent association or otherwise) to one or more other binding molecules, such as another antibody, antibody fragment, tumor specific or pathogen specific antigens, peptide or binding mimetic, such that a bispecific molecule results. Accordingly, the present invention includes bispecific molecules comprising at least one first binding molecule having specificity for TNFa and a second binding molecule having specificity for one or more additional target epitope.

In one embodiment, the bispecific molecules of the invention comprise a binding specificity at least one antibody, or an antibody fragment thereof, including, e.g., an Fab, Fab', F(ab')2, Fv, or a single chain Fv. The antibody may also be a light chain or heavy chain dimer, or any minimal fragment thereof such as a Fv or a single chain construct as described in Ladner et al. U.S. Patent No. 4,946,778, the contents of which are expressly incorporated by reference.

While human monoclonal antibodies are preferred, other antibodies which can be employed in the bispecific molecules of the invention are murine, chimeric and humanized

Ό monoclonal antibodies.

The bispecific molecules of the present invention can be prepared by conjugating the constituent binding specificities using methods known in the art. For example, each binding specificity of the bispecific molecule can be generated separately and then conjugated to one another. When the binding specificities are proteins or peptides, a variety of coupling or cross-linking agents can be used for covalent conjugation. Examples of cross-linking agents include protein A, carbodiimide, N-succinimidyl-S-acetyl-thioacetate (SATA), 5,5'dithiobis(2-nitrobenzoic acid) (DTNB), o-phenylenedimaleimide (oPDM), N-succinimidyl-3(2-pyridyldithio)propionate (SPDP), and sulfosuccinimidyl 4-(N-maleimidomethyl) cyclohaxane-l-carboxylate (sulfo-SMCC) (see e.g., Karpovsky et al. (1984) J. Exp. Med.

160:1686; Liu, MA et al. (1985) Proc. Natl. Acad. Sci. USA 82:8648). Other methods include those described in Paulus (1985) Behring Ins. Mitt. No. 78, 118-132; Brennan et al. (1985) Science 229:81-831, and Glennie et al. (1987) J. Immunol. 139: 2367-2375). Preferred

2016277637 21 Dec 2016 conjugating agents are SATA and sulfo-SMCC, both available from Pierce Chemical Co. (Rockford, IL).

When the binding specificities are antibodies, they can be conjugated via sulfhydryl bonding, for example, via the C-terminus hinge regions of the two heavy chains or other sites, 5 whether naturally occurring or introduced artificially. In a particularly preferred embodiment, the hinge region is modified to contain an odd number of sulfhydryl residues, preferably one, prior to conjugation.

Alternatively, both binding specificities can be encoded in the same vector and expressed and assembled in the same host cell. This method is particularly useful where the 0 bispecific molecule is a mAb x mAb, mAb x Fab, Fab x F(ab')2 or ligand x Fab fusion protein. A bispecific molecule of the invention can be a single chain molecule comprising one single chain antibody and a binding determinant, or a single chain bispecific molecule comprising two binding determinants. Bispecific molecules may comprise at least two single chain molecules. Further, a bispecfic molecule may be a scFv that specifically binds to first 5 target, wherein theVH and VL of said scFv are linked with a flexible linker comprising a domain providing specific binding to a second target. Suitable linkers are described, for example, in International Patent Application WO 2010/006454. Methods for preparing bispecific molecules are described for example in U.S. Patent Number 5,260,203; U.S. Patent Number 5,455,030; U.S. Patent Number 4,881,175; U.S. Patent Number 5,132,405; U.S. Ό Patent Number 5,091,513; U.S. Patent Number 5,476,786; U.S. Patent Number 5,013,653; U.S. Patent Number 5,258,498; and U.S. Patent Number 5,482,858.

Binding of the bispecific molecules to their specific targets can be confirmed by, for example, enzyme-linked immunosorbent assay (ELISA), radioimmunoassay (RIA), FACS analysis, bioassay (e.g., growth inhibition), or by immunoblot assay. Each of these assays generally detects the presence of protein-antibody complexes of particular interest by employing a labeled reagent (e.g., an antibody) specific for the complex of interest. For example, the TNF-antibody complexes can be detected using e.g., an enzyme-linked antibody or antibody fragment which recognizes and specifically binds to the antibody-TNF complexes. Alternatively, the complexes can be detected using any of a variety of other immunoassays. For example, the antibody can be radioactively labeled and used in a radioimmunoassay (RIA) (see, for example, Weintraub, B., Principles of

Radioimmunoassays, Seventh Training Course on Radioligand Assay Techniques, The Endocrine Society, March, 1986, which is incorporated by reference herein). The radioactive

2016277637 21 Dec 2016 isotope can be detected by such means as the use of a γ counter or a scintillation counter or by autoradiography.

In another aspect, the invention provides a method for producing the antibodies described herein. The methods for producing antibodies having reduced propensity for 5 aggregating in solution as provided herein are based on the surprising observation that through modulation of the antibody domain interaction between the light chain and heavy chain, aggregation propensity of antibodies can be reduced, and that aggregation-reducing mutations can be reliably predicted by determining the free energy of the VL/VH interface defined as the difference between the energy of the antibody (such as an scFv) and the 0 individual variable domains. As shown herein, aggregation-reducing substitutions that modulate antibody domain interaction by lowering the free energy between the variable domains can be made without affecting stability or binding activity of the antibody.

In one embodiment, a method of the invention comprises the steps of:

(i) providing an antibody comprising a variable light chain (VF) and a variable heavy chain (VH);

(ii) identifying one or more residue position participating in the interface between the variable light chain (VF) and the variable heavy chain (VH) of the antibody; and (iii) modifying the antibody by introducing a substitution at the identified residue

Ό position(s) such that the substitution(s) reduces the free energy between the

VF and the VH domains by at least 0.5 kcal/mol, preferably at least 1.0 kcal/mol, and most preferably at least 2.0 kcal/mol (i.e., the free energy between the VF and VH domains with the substitution is at least 0.5 kcal/mol less than the free energy between the corresponding VF and VH domains that do not comprise the amino acid substitution), thereby reducing the aggregation propensity of the modified antibody compared with that of a parental antibody.

As outlined above, the antibody can be, for example, a Fab, Fab', a F(ab)'2, singlechain Fv (scFv), an Fv fragment, a diabody, a single-chain diabody, a tandem antibody, or a linear antibody; in a preferred embodiment, the antibody is a single-chain Fv (scFv).

In a preferred embodiment, the identification of the one or more residue positions participating in the interface between the variable light chain and the variable heavy chain of the antibody (i.e. step (ii)) involves the determination of the free energy between the VF -VH

2016277637 21 Dec 2016 interface. This can be performed by using commonly known bioinformatic programs. One example of a suitable bioinformatic program is CHARMM (Chemistry at HARvard Macromolecular Mechanics).

For the purpose of determining the free energy between the VF -VH interface, 5 typically, a full atomistic molecular presentation of the protein is provided. The free energy of the interface is the energy difference between the entire antibody comprising both variable domains VF and VH and the sum of the energies of the individual domains in the context of an implicit solvent method. This involves three single energy calculations, (1) on the antibody G(a); (2) on the VF G(b); and (3) on the VH G(c). Accordingly, the free energy of 0 the interface is

G interface = G(a)- G(b) - G(c)

In one embodiment, the implicit solvent method is GBMV or PBSA as known in the art.

The free energy determination may further comprise the step of simulating the charge 5 distribution of the protein. Said charge distribution can be simulated based on electrostatic or van der Waals forces.

To determine a suitable modification, one or more amino acid residues participating in the interface can be chosen for substitution. For example, a molecular model of the protein comprising the one or more substitutions (e.g., changing one or more residues to alanine) at

Ό the selected positions is generated and the free energy of the interface of the substituted molecular presentation is determined. If the free energy of the interface of the substituted molecular model is lower than the free energy of the interface of the initial molecular model, the amino acid residue is selected for substitution. Within the context of CHARMm, mutations can be constructed, for example, with the Build Mutants protocol. The one or more substitutions in the molecular model can be at positions that are known or suspected to be involved in the VF/VH interface.

In one embodiment, an additional step of energy minimization of the molecular model comprising the one or more substitutions at the selected position(s) in the area around the mutation(s) is performed. Said area can be set to 10 Angstroms.

In one embodiment, a residue position identified for substitution is occupied by a charged amino acid.

2016277637 21 Dec 2016

An antibody produced by a method of the invention can comprise any suitable variable light chain or heavy chain as known in the art, and preferably comprises at least one CDR from a rabbit antibody. Certain preferred variable light and heavy chains are described herein. For example, an antibody of the invention can comprise: a VL antibody framework 5 having at least 65% identity, more preferably 80%, 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 11 or SEQ ID NO: 12, further comprising arginine (R) at AHo position 47 and/or at AHo position 50 of the variable light chain; and a VH antibody framework having at least 80% identity, more preferably, 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 3.

The modification of the one or more residue positions is preferably done according to the teachings of PCT/CH2008/000285, which is incorporated herein by reference in its entirety. Briefly, for a given antibody subtype, certain amino acids are present at specific residue positions of the antibody framework. For example,

a) for a human VH3 family heavy chain variable region, the preferred amino acids are:

(i) glutamine (Q) at amino acid position 1 using AHo or Kabat numbering system;

(ii) glutamine (Q) at amino acid position 6 using AHo or Kabat numbering system;

(iii) threonine (T) or alanine (A) at amino acid position 7 using AHo or Kabat

Ό numbering system;

(iv) alanine (A), valine (V), or phenylalanine (F) at amino acid position 89 using AHo numbering system (amino acid position 78 using Kabat numbering system); and/or (v) arginine (R), glutamine (Q), isoleucine (I), leucine (L), methionine (M) or phenylalanine (F) at amino acid position 103 using AHo numbering system (amino acid position 89 using Kabat numbering);

b) for a human VHla family heavy chain variable region, the preferred amino acids are:

(i) glutamic acid (E) at amino acid position 1 using AHo or Kabat numbering system;

(ii) glutamic acid (E) at amino acid position 6 using AHo or Kabat numbering system;

(iii) leucine (L) at amino acid position 12 using AHo numbering system (amino acid position 11 using Kabat numbering system);

2016277637 21 Dec 2016 (iv) methionine (M) at amino acid position 13 using AHo numbering system (amino acid position 12 using Kabat numbering system):

(v) glutamic acid (E) or glutamine (Q) at amino acid position 14 using AHo numbering system (amino acid position 13 using Kabat numbering system);

(vi) leucine (L) at amino acid position 19 using AHo numbering system (amino acid position 18 using Kabat numbering system);

(vii) isoleucine (I) at amino acid position 21 using AHo numbering system (amino acid position 20 using Kabat numbering system);

(viii) phenylalanine (F), serine (S), histidine (H) or aspartic acid (D) at amino acid position 90 using AHo numbering system (amino acid position 79 using Kabat numbering system);

(ix) aspartic acid (D) or glutamine (Q) at amino acid position 92 using AHo numbering system (amino acid position 81 using Kabat numbering system);

(x) glycine (G), asparagine (N) or threonine (T) at amino acid position 95 using AHo numbering system (amino acid position 82b using Kabat numbering system); and/or (xi) threonine (T), alanine (A), proline (P) or phenylalanine (F) at amino acid position 98 using AHo numbering (amino acid position 84 using Kabat numbering);

c) for a human VHlb family heavy chain variable region, preferred amino acids are:

Ό (i) glutamic acid (E) at amino acid position 1 using AHo or Kabat numbering system;

(ii) threonine (T), proline (P), valine (V) or aspartic acid (D) at amino acid position 10 using AHo numbering system (amino acid position 9 using Kabat numbering system);

(iii) leucine (F) at amino acid position 12 using AHo numbering system (amino acid position 11 using Kabat numbering system);

(iv) valine (V), arginine (R), glutamine (Q) or methionine (M) at amino acid position 13 using AHo numbering system (amino acid position 12 using Kabat numbering system):

(v) glutamic acid (E), arginine (R) or methionine (M) at amino acid position using AHo numbering system (amino acid position 13 using Kabat numbering system);

2016277637 21 Dec 2016 (vi) arginine (R), threonine (T), or asparagine (N) at amino acid position 20 using AHo numbering system (amino acid position 19 using Kabat numbering system);

(vii) isoleucine (I), phenylalanine (F), or leucine (F) at amino acid position 21 using AHo numbering system (amino acid position 20 using Kabat numbering system);

(viii) lysine (K) at amino acid position 45 using AHo numbering system (amino acid position 38 using Kabat numbering system);

(ix) threonine (T), proline (P), valine (V) or arginine (R) at amino acid position 47 using AHo numbering system (amino acid position 40 using Kabat numbering system);

(x) lysine (K), histidine (H) or glutamic acid (E) at amino acid position 50 using AHo numbering system (amino acid position 43 using Kabat numbering system);

(xi) isoleucine (I) at amino acid position 55 using AHo numbering (amino acid position 48 using Kabat numbering);

(xii) lysine (K) at amino acid position 77 using AHo numbering (amino acid position 66 using Kabat numbering);

(xiii) alanine (A), leucine (F) or isoleucine (I) at amino acid position 78 using Ό AHo numbering system (amino acid position 67 using Kabat numbering system);

(xiv) glutamic acid (E), threonine (T) or alanine (A) at amino acid position 82 using AHo numbering system (amino acid position 71 using Kabat numbering system);

(xv) threonine (T), serine (S) or leucine (F) at amino acid position 86 using

AHo numbering system (amino acid position 75 using Kabat numbering system);

(xvi) aspartic acid (D), asparagine (N) or glycine (G) at amino acid position 87 using AHo numbering system (amino acid position 76 using Kabat numbering system); and/or (xvii) asparagine (N) or serine (S) at amino acid position 107 using AHo 30 numbering system (amino acid position 93 using Kabat numbering system);

d) for a human Vkappal family light chain variable region, preferred amino acids are:

(i) glutamic acid (E) or isoleucine (I) at amino acid position 1 using AHo or Kabat numbering system;

2016277637 21 Dec 2016 (ii) valine (V) or isoleucine (I) at amino acid position 3 using AHo or Kabat numbering system;

(iii) valine (V), leucine (L) or isoleucine (I) at amino acid position 4 using AHo or Kabat numbering system;

(iv) glutamine (Q) at amino acid position 24 using AHo or Kabat numbering system;

(v) arginine (R) or isoleucine (I) at amino acid position 47 using AHo numbering system (amino acid position 39 using Kabat numbering system);

(vi) arginine (R), glutamic acid (E) threonine (T), methionine (M) or glutamine (Q) at amino acid position 50 using AHo numbering system (amino acid position 42 using Kabat numbering system);

(vii) histidine (H), serine (S) or phenylalanine (F) at amino acid position 57 using AHo numbering system (amino acid position 49 using Kabat numbering system);

(viii) phenylalanine (F) at amino acid position 91 using AHo numbering system (amino acid position 73 using Kabat numbering system); and/or (ix) valine (V), serine (S), glycine (G) or isoleucine (I) at amino acid position 103 using AHo numbering system (amino acid position 85 using Kabat numbering system);

Ό e) for a human Vkappa3 family light chain variable region, the preferred amino acids are:

(i) threonine (T) at amino acid position 2 using AHo or Kabat numbering system;

(ii) threonine (T) at amino acid position 3 using AHo or Kabat numbering system;

(iii) isoleucine (I) at amino acid position 10 using AHo or Kabat numbering system;

(iv) tyrosine (Y) at amino acid position 12 using AHo or Kabat numbering system;

(v) serine (S) at amino acid position 18 using AHo or Kabat numbering system;

(vi) alanine (A) at amino acid position 20 using AHo or Kabat numbering system;

2016277637 21 Dec 2016 (vii) methionine (M) at amino acid position 56 using AHo numbering system (amino acid position 48 using Kabat numbering system);

(viii) valine (V) or threonine (T) at amino acid position 74 using AHo numbering system (amino acid position 58 using Kabat numbering system);

(ix) asparagine (N) at amino acid position 94 using AHo numbering system (amino acid position 76 using Kabat numbering system);

(x) tyrosine (Y) or serine (S) at amino acid position 101 using AHo numbering system (amino acid position 83 using Kabat numbering system); and/or (xi) leucine (L) or alanine (A) at amino acid position 103 using AHo numbering (amino acid position 85 using Kabat numbering);

f) for a human Vlambdal family light chain variable region, preferred amino acids are:

(i) leucine (L), serine (S) or glutamic acid (E) at amino acid position 1 using AHo or Kabat numbering system;

(ii) alanine (A), proline (P), isoleucine (I) or tyrosine (Y) at amino acid position 2 using AHo or Kabat numbering system;

(iii) valine (V) or methionine (M) at amino acid position 4 using AHo or Kabat numbering system;

(iv) glutamic acid (E) at amino acid position 7 using AHo or Kabat numbering system;

Ό (v) alanine (A) at amino acid position 11 using AHo or Kabat numbering system;

(vi) threonine (T) or serine (S) at amino acid position 14 using AHo or Kabat numbering system;

(vii) histidine (H) at amino acid position 46 using AHo numbering system (amino acid position 38 using Kabat numbering system);

(viii) threonine (T), serine (S), asparagine (N), glutamine (Q) or proline (P) at amino acid position 53 using AHo numbering system (amino acid position 45 using Kabat numbering system);

(ix) arginine (R) or glutamine (Q) at amino acid position 82 using AHo numbering system (amino acid position 66 using Kabat numbering system);

(x) glycine (G), threonine (T) or aspartic acid (D) at amino acid position 92 using AHo numbering system (amino acid position 74 using Kabat numbering system); and/or

2016277637 21 Dec 2016 (xi) valine (V), threonine (T), histidine (H) or glutamic acid (E) at amino acid position 103 using AHo numbering (amino acid position 85 using Kabat numbering).

Accordingly, substitutions made in the present method preferably follow the teachings of PCT/CH2008/000285. The subtype determination is known to the person skilled in the art.

In one embodiment, a method of the invention comprises modification of an antibody at AHo position 47 and/or 50 of the variable light chain, in particular of a Vkappal variable light chain. Preferably, the antibody is modified to comprise arginine (R) at AHo position 47 and/or at AHo position 50 of the variable light chain. In some embodiments, lysine (K) is substituted by arginine (R) at AHo position 47 and/or AHo position 50 of the variable light chain.As the antibodies of the invention can comprise additional modifications as desired, the methods of the invention can comprise the further step of modifying the antibody such as to comprise Serine (S) at heavy chain position 12 (AHo numbering); Serine (S) or Threonine (T) at heavy chain position 103 (AHo numbering) and/or Serine (S) or Threonine (T) at heavy chain position 144 (AHo numbering). Additionally, the antibody can be modified to comprise Serine (S) or Threonine (T) at heavy chain positions 97, 98 and/or 99 (AHo numbering). Preferably, the method comprises the step of modifying the antibody to comprise Serine (S) at heavy chain position 12 (AHo numbering), Threonine (T) at heavy chain position 103 (AHo numbering) and Threonine (T) at heavy chain position 144 (AHo numbering).

Ό The invention further provides a method of generating a humanized antibody with a low propensity for aggregating in solution, the method comprising selecting a variable light chain framework that comprises arginine (R) at AHo position 47 and/or at AHo position 50. The method may further comprise selecting a variable heavy chain framework that comprises a serine (S) at heavy chain position 12 (AHo numbering); serine (S) or threonine (T) at heavy chain position 103 (AHo numbering) and/or serine (S) or threonine (T) at heavy chain position 144 (AHo numbering). In one embodiment, a framework identified based on a chosen selection criteria may be further modified with an aggregation-reducing modification of the invention. For example, if a varibable light chain framework is identified that has an arginine (R) at position 50, the residue at AHo position may be substituted with a different amino acid, such as arginine (R), or if a variable heavy chain is identified that has a serine (S) at AHo position 12, the residues at AHo positions 103 and 144 may be substituted with threonines.

2016277637 21 Dec 2016

As used herein, a “humanized” antibody is an antibody that comprises non-human CDRs and human or human-derived variable heavy and/or human or human-derived variable light chain framework sequences. Humanization of antibodies is well known in the art. In one embodiment, the humanized antibody comprises at least one, and preferably six, CDRs 5 from an antibody produced in a rabbit or selected from a CDR library.

The variable antibody frameworks can be selected, for example, from a database (such as the Kabat database, Genbank (http://www.ncbi.nlm.nih.gov/genbank/), VBASE (http://vbase.mrc-cpe.cam.ac.uk/), VBASE2 (http://www.vbase2.org/), The Kabat Database of Sequences of Proteins of Immunological Interest (http://www.kabatdatabase.com/index.html), the Universal Protein Resource (UniProt; http://pir.georgetown.edu/), and Abysis Database (http://www.bioinf.org.uk/abs/), based on identity and/or similarity with the variable framework sequences of the antibody from which the CDRs originated, or based on otherwise preferred framework sequence(s).

Various computer programs are available for searching suitable human framework 5 sequences that meet the selected requirement(s). For example, “KabatMan” is a computersearchable version of the Kabat antibody sequence data from the Sequences of Immunological Interest book. The KabatMan program is described in the paper: Martin (1996) Accessing the Kabat Antibody Sequence Database by Computer PROTEINS: Structure, Function and Genetics, 25, 130-133, and is available at http://www.bioinf.org.uk/abs/simkab.html, and

Ό http://www.bioinf.org.uk/abs/kabatman.html. The Abysis database, at http://www.bioinf.org.uk/abysis/, integrates sequence data from Kabat, IMGT and the PDB with structural data from the PDB. It provides a comprehensive point-and-click interface which allows one to search the sequence data on various criteria and display results in different formats. For data from the PDB, sequence searches can be combined with structural constraints.

In another aspect, the invention provides an antibody generated by the method disclosed herein. In a preferred embodiment, said antibody comprises a VF antibody framework having at least 80% identity, more preferably 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 12 or SEQ ID NO: 13; preferably, the antibody comprises arginine (R) at AHo position 47 and/or at AHo position 50 of the variable light chain.

2016277637 21 Dec 2016

Additionally or alternatively, the VH antibody framework is or comprises SEQ ID NO: 3 or a sequence having at least 80% identity, more preferably, 85%, 90%, 95%, 96%, 97%, 98%, more preferably 99% to SEQ ID NO: 3.

In certain embodiments, the invention further provides:

(1) A method for reducing the aggregation propensity of an antibody being a heterodimeric complex that comprises heavy and light variable domains, the method comprising the steps of:

(a) providing a full atomistic molecular presentation of the antibody;

(b) determining the free energy of the interface between both domains;

(c) choosing one or more amino acid residues participating in the interface for substitution by providing a molecular model of the antibody comprising the one or more substitutions at the selected positions and determining the free energy of the interface of the substituted molecular presentation;

(d) selecting an amino acid residue for substitution if the free energy of the interface of the substituted molecular model is lower than the free energy of the interface of the initial molecular model;

(2) A method of (1), wherein the free energy of the interface is determined by calculating the energy difference between the complex and the sum of the energies of the individual domains in the context of an implicit solvent method;

Ό (3) The method of (2), wherein the solvent is GBMV or PBSA;

(4) The method of anyone of the preceding (1)-(3), further comprising the step of (i) simulating the charge distribution of the protein, wherein said step is performed within step a and b;

(5) The method of (4), wherein the charge distribution is simulated based on electrostatic or van der Waals forces;

(6) The method of anyone of the preceding (1)-(5), wherein step (c) comprises the additional step of energy minimization in the area around the mutation;

(7) The method of anyone of the preceding (1)-(7), wherein the antibody is a single chain variable fragment (scFv).

Antibodies of the invention may be generated using routine techniques in the field of recombinant genetics. Knowing the sequences of the polypeptides, the cDNAs encoding them can be generated by gene synthesis by methods well known in the art. These cDNAs can be cloned into suitable vector plasmids.

2016277637 21 Dec 2016

Standard cloning and mutagenesis techniques well known to the person skilled in the art can be used to attach linkers, shuffle domains or construct fusions for the production of Fab fragments. Basic protocols disclosing the general methods of this invention are described in Molecular Cloning, A Laboratory Manual (Sambrook & Russell, 3 ed. 2001) and in 5 Current Protocols in Molecular Biology (Ausubel et al., 1999).

The DNA sequence harboring a gene encoding a scFv polypeptide, or in the case of Fab fragments, encoding either two separate genes or a bi-cistronic operon comprising the two genes for the VL-Ck and the VH-CH1 fusions are cloned in a suitable expression vector, preferably one with an inducible promoter. Care must be taken that in front of each gene an 0 appropriate ribosome binding site is present that ensures translation. It is to be understood that the antibodies of the present invention comprise the disclosed sequences rather than they consist of them. For example, cloning strategies may require that a construct is made from which an antibody with one or a few additional residues at the N-terminal end are present. Specifically, the methionine derived from the start codon may be present in the final protein 5 in cases where it has not been cleaved posttranslationally. Most of the constructs for scFv antibodies give rise to an additional alanine at the N-terminal end. In a preferred embodiment of the present invention, an expression vector for periplasmic expression in E. coli is chosen (Krebber, 1997). Said vector comprises a promoter in front of a cleavable signal sequence. The coding sequence for the antibody peptide is then fused in frame to the cleavable signal Ό sequence. This allows the targeting of the expressed polypeptide to the bacterial periplasm where the signal sequence is cleaved. The antibody is then folded. In the case of the Fab fragments, both the VL-Ck and the VH-CH1 fusions peptides must be linked to an export signal. The covalent S-S bond is formed at the C-terminal cysteines after the peptides have reached the periplasm. If cytoplasmic expression of antibodies is preferred, said antibodies 25 usually can be obtained at high yields from inclusion bodies, which can be easily separated from other cellular fragments and protein. In this case the inclusion bodies are solubilized in a denaturing agent such as e.g. guaridine hydrochloride (GndHCl) and then refolded by renaturation procedures well known to those skilled in the art.

Plasmids expressing the scFv or Fab polypeptides are introduced into a suitable host, 30 preferably a bacterial, yeast or mammalian cell, most preferably a suitable E. coli strain as for example JM83 for periplasmic expression or BL21 for expression in inclusion bodies. The polypeptide can be harvested either from the periplasm or form inclusion bodies and purified using standard techniques such as ion exchange chromatography, reversed phase

2016277637 21 Dec 2016 chromatography, affinity chromatography and/or gel filtration known to the person skilled in the art.

Antibodies of the invention can be characterized with respect to yield, solubility and stability in vitro. For example, binding capacities towards TNF, preferably towards human

TNFa, can be tested in vitro by EFISA or surface plasmon resonance (BIACore), using recombinant human TNF as described in WO9729131, the latter method also allowing to -3 -1 determine the k_Off rate constant, which should preferably be less than 10’ s’ . Kd values of <10 nM are preferred.

In one embodiment, the present invention provides antibodies that bind TNFa and 0 thus are suitable to block the function of TNFa in vivo. In a particular embodiment, the antiTNFa antibody comprises the sequence of SEQ ID NO: 10 or SEQ ID NO: 17.

For therapeutic applications, anti-TNF antibodies of the invention are administered to a mammal, preferably a human, in a pharmaceutically acceptable dosage form such as those discussed above, including those that may be administered to a human intravenously as a bolus or by continuous infusion over a period of time, by intramuscular, intraperitoneal, intracerebrospinal, subcutaneous, intra-articular, intrasynovial, intrathecal, oral, topical, intraocular, intranasal, otic, sublingual, transdermal, or inhalation routes, for example. The antibodies also are suitably administered by intra tumoral, peritumoral, intralesional, or perilesional routes, to exert local as well as systemic therapeutic effects.

Ό For the prevention or treatment of disease, the appropriate dosage of antibody will depend on the type of disease to be treated, as defined above, the severity and course of the disease, whether the antibody is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the antibody, and the discretion of the attending physician. The antibody is suitably administered to the patient at one time or over a series of treatments.

Anti-TNF antibodies of the invention are useful in the treatment of TNF-mediated diseases. Depending on the type and severity of the disease, about 1 pg/kg to about 50 mg/kg (e.g., 0.1-20 mg/kg) of antibody is an initial candidate dosage for administration to the patient, whether, for example, by one or more separate administrations, or by continuous infusion. A typical daily or weekly dosage might range from about 1 pg/kg to about 20 mg/kg or more, depending on the factors mentioned above. For repeated administrations over several days or longer, depending on the condition, the treatment is repeated until a desired

2016277637 21 Dec 2016 suppression of disease symptoms occurs. However, other dosage regimens may be useful. The progress of this therapy is easily monitored by conventional techniques and assays, including, for example, radiographic tumor imaging.

According to another embodiment of the invention, the effectiveness of the antibody 5 in preventing or treating disease may be improved by administering the antibody serially or in combination with another agent that is effective for those purposes, such as vascular endothelial growth factor (VEGF), an antibody capable of inhibiting or neutralizing the angiogenic activity of acidic or basic fibroblast growth factor (FGF) or hepatocyte growth factor (HGF), an antibody capable of inhibiting or neutralizing the coagulant activities of 0 tissue factor, protein C, or protein S (see Esmon et al., PCT Patent Publication No. WO 91/01753, published 21 Feb. 1991), an antibody capable of binding to HER2 receptor (see Hudziak et al., PCT Patent Publication No. WO 89/06692, published 27 Jul. 1989), or one or more conventional therapeutic agents such as, for example, alkylating agents, folic acid antagonists, anti-metabolites of nucleic acid metabolism, antibiotics, pyrimidine analogs, 55 fluorouracil, cisplatin, purine nucleosides, amines, amino acids, triazol nucleosides, or corticosteroids. Such other agents may be present in the composition being administered or may be administered separately. Also, the antibody is suitably administered serially or in combination with radiological treatments, whether involving irradiation or administration of radioactive substances.

Ό Antibodies of the invention may be used as affinity purification agents. In this process, the antibodies are immobilized on a solid phase such a Sephadex resin or filter paper, using methods well known in the art. The immobilized antibody is contacted with a sample containing a target protein (or fragment thereof) that the antibody binds, such as TNF in the case of anti-TNFa antibodies, to be purified, and thereafter the support is washed with a suitable solvent that will remove substantially all the material in the sample except the target protein, which is bound to the immobilized antibody. Finally, the support is washed with another suitable solvent, such as glycine buffer, pH 5.0, that will release the target protein from the antibody.

Antibodies may also be useful in diagnostic assays for a target protein, e.g., detecting its expression in specific cells, tissues, or serum. Such diagnostic methods may be useful in cancer diagnosis.

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For diagnostic applications, the antibody typically will be labeled with a detectable moiety. Numerous labels are available which can be generally grouped into the following categories:

(a) Radioisotopes, such as ¹¹¹ In, ⁹⁹ Tc, ¹⁴ C, ¹³¹1, ¹²⁵ I, ³ H, ³² P or ³⁵ S. The antibody 5 can be labeled with the radioisotope using the techniques described in Current Protocols in

Immunology, Volumes 1 and 2, Coligen et al., Ed. Wiley-Interscience, New York, N.Y., Pubs. (1991) for example and radioactivity can be measured using scintillation counting.

(b) Fluorescent labels such as rare earth chelates (europium chelates) or fluorescein and its derivatives, rhodamine and its derivatives, dansyl, Lissamine, phycoerythrin and

Texas Red are available. The fluorescent labels can be conjugated to the antibody using the techniques disclosed in Current Protocols in Immunology, supra, for example. Fluorescence can be quantified using a fluorimeter.

(c) Various enzyme-substrate labels are available and U.S. Pat. No. 4,275,149 provides a review of some of these. The enzyme generally catalyzes a chemical alteration of the chromogenic substrate which can be measured using various techniques. For example, the enzyme may catalyze a color change in a substrate, which can be measured spectrophotometric ally. Alternatively, the enzyme may alter the fluorescence or chemiluminescence of the substrate. Techniques for quantifying a change in fluorescence are described above. The chemiluminescent substrate becomes electronically excited by a

Ό chemical reaction and may then emit light which can be measured (using a chemiluminometer, for example) or donates energy to a fluorescent acceptor. Examples of enzymatic labels include luciferases (e.g., firefly luciferase and bacterial luciferase; U.S. Pat. No. 4,737,456), luciferin, 2,3-dihydrophthalazinediones, malate dehydrogenase, urease, peroxidase such as horseradish peroxidase (HRPO), alkaline phosphatase, .beta.25 galactosidase, glucoamylase, lysozyme, saccharide oxidases (e.g., glucose oxidase, galactose oxidase, and glucose-6-phosphate dehydrogenase), heterocyclic oxidases (such as uricase and xanthine oxidase), lactoperoxidase, microperoxidase, and the like. Techniques for conjugating enzymes to antibodies are described in O'Sullivan et al., Methods for the Preparation of Enzyme-Antibody Conjugates for use in Enzyme Immunoassay, in Methods in

Enzym. (ed J. Langone & H. Van Vunakis), Academic press, New York, 73:147-166 (1981).

Examples of enzyme-substrate combinations include, for example:

2016277637 21 Dec 2016 (i) Horseradish peroxidase (HRPO) with hydrogen peroxidase as a substrate, wherein the hydrogen peroxidase oxidizes a dye precursor (e.g., orthophenylene diamine (OPD) or 3,3',5,5'-tetramethyl benzidine hydrochloride (TMB));

(ii) alkaline phosphatase (AP) with para-Nitrophenyl phosphate as chromogenic 5 substrate; and (iii) β-D-galactosidase (β-D-Gal) with a chromogenic substrate (e.g., P-nitrophenyl-βD-galactosidase) or fluorogenic substrate 4-methylumbelliferyl-.beta.-D-galactosidase.

Numerous other enzyme-substrate combinations are available to those skilled in the art. For a general review of these, see U.S. Pat. Nos. 4,275,149 and 4,318,980. Sometimes, 0 the label is indirectly conjugated with the antibody. The skilled artisan will be aware of various techniques for achieving this. For example, the antibody can be conjugated with biotin and any of the three broad categories of labels mentioned above can be conjugated with avidin, or vice versa. Biotin binds selectively to avidin and thus, the label can be conjugated with the antibody in this indirect manner. Alternatively, to achieve indirect 5 conjugation of the label with the antibody, the antibody is conjugated with a small hapten (e.g., digoxin) and one of the different types of labels mentioned above is conjugated with an anti-hapten antibody (e.g., anti-digoxin antibody). Thus, indirect conjugation of the label with the antibody can be achieved.

In certain embodiments, an antibody need not be labeled, and the presence thereof can Ό be detected using a labeled antibody which binds to a target antibody.

The antibodies of the present invention may be employed in any known assay method, such as competitive binding assays, direct and indirect sandwich assays, and immunoprecipitation assays. Zola, Monoclonal Antibodies: A Manual of Techniques, pp.147158 (CRC Press, Inc. 1987).

Competitive binding assays rely on the ability of a labeled standard to compete with the test sample analyte for binding with a limited amount of antibody. For example, the amount of TNF protein in the test sample is inversely proportional to the amount of standard that becomes bound to the antibodies. To facilitate determining the amount of standard that becomes bound, the antibodies generally are insolubilized before or after the competition, so that the standard and analyte that are bound to the antibodies may conveniently be separated from the standard and analyte which remain unbound.

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Sandwich assays involve the use of two antibodies, each capable of binding to a different immunogenic portion, or epitope, of the protein to be detected. In a sandwich assay, the test sample analyte is bound by a first antibody which is immobilized on a solid support, and thereafter a second antibody binds to the analyte, thus forming an insoluble three-part 5 complex. See, e.g., U.S. Pat. No. 4,376,110. The second antibody may itself be labeled with a detectable moiety (direct sandwich assays) or may be measured using an antiimmunoglobulin antibody that is labeled with a detectable moiety (indirect sandwich assay). For example, one type of sandwich assay is an ELISA assay, in which case the detectable moiety is an enzyme.

For immunohistochemistry, the tissue sample, such as a tumor sample, may be fresh or frozen or may be embedded in paraffin and fixed with a preservative such as formalin, for example.

The antibodies may also be used for in vivo tumor diagnostic assays. Generally, the antibody is labeled with a radio nuclide (such as ¹¹¹ In, ⁹⁹ Tc, ¹⁴ C, ¹³¹ I, ¹²⁵ I, ³ H, ³² P or ³⁵S) so that the tumor can be localized using immunoscintiography.

An antibody of the present invention can be provided in a kit, a packaged combination of reagents in predetermined amounts with instructions for performing the diagnostic assay. Where the antibody is labeled with an enzyme, the kit will include substrates and cofactors required by the enzyme (e.g., a substrate precursor which provides the detectable

Ό chromophore or fluorophore). In addition, other additives may be included such as stabilizers, buffers (e.g., a block buffer or lysis buffer) and the like. The relative amounts of the various reagents may be varied widely to provide for concentrations in solution of the reagents which substantially optimize the sensitivity of the assay. Particularly, the reagents may be provided as dry powders, usually lyophilized, including excipients which on dissolution will provide a reagent solution having the appropriate concentration.

The invention further provides pharmaceutical formulations comprising one or more antibodies of the invention for therapeutic purposes. In one embodiment, the invention provides anti-TNF antibodies for the treatment of TNF-mediated diseases.

The term pharmaceutical formulation refers to preparations which are in such form 30 as to permit the biological activity of the antibody to be unequivocally effective, and which contain no additional components which are toxic to the subjects to which the formulation would be administered. Pharmaceutically acceptable excipients (vehicles, additives) are

2016277637 21 Dec 2016 those which can reasonably be administered to a subject mammal to provide an effective dose of the active ingredient employed.

A stable formulation is one in which the antibody therein essentially retains its physical stability and/or chemical stability and/or biological activity upon storage. Various 5 analytical techniques for measuring protein stability are available in the art and are reviewed in Peptide and Protein Drug Delivery, 247-301, Vincent Lee Ed., Marcel Dekker, Inc., New York, N.Y., Pubs. (1991) and Jones, A. Adv. Drug Delivery Rev. 10: 29-90 (1993), for example. Stability can be measured at a selected temperature for a selected time period. Preferably, the formulation is stable at room temperature (about 30° C) or at 40° C for at least 0 1 month and/or stable at about 2-8° C for at least 1 year for at least 2 years. Furthermore, the formulation is preferably stable following freezing (to, e.g., -70° C) and thawing of the formulation.

An antibody retains its physical stability in a pharmaceutical formulation if it shows no signs of aggregation, precipitation and/or denaturation upon visual examination of color and/or clarity, or as measured by LV light scattering or by size exclusion chromatography.

An antibody retains its chemical stability in a pharmaceutical formulation, if the chemical stability at a given time is such that the protein is considered to still retain its biological activity as defined below. Chemical stability can be assessed by detecting and quantifying chemically altered forms of the protein. Chemical alteration may involve size

Ό modification (e.g. clipping) which can be evaluated using size exclusion chromatography, SDS-PAGE and/or matrix-assisted laser desorption ionization/time-of-flight mass spectrometry (MALDETOF MS), for example. Other types of chemical alteration include charge alteration (e.g. occurring as a result of deamidation) which can be evaluated by ionexchange chromatography, for example.

An antibody retains its biological activity in a pharmaceutical formulation, if the biological activity of the antibody at a given time is within about 10% (within the errors of the assay) of the biological activity exhibited at the time the pharmaceutical formulation was prepared as determined in an antigen binding assay, for example. Other biological activity assays for antibodies are elaborated herein below.

By isotonic is meant that the formulation of interest has essentially the same osmotic pressure as human blood. Isotonic formulations will generally have an osmotic

2016277637 21 Dec 2016 pressure from about 250 to 350 mOsm. Isotonicity can be measured using a vapor pressure or ice-freezing type osmometer, for example.

A polyol is a substance with multiple hydroxyl groups, and includes sugars (reducing and non-reducing sugars), sugar alcohols and sugar acids. Preferred polyols herein 5 have a molecular weight which is less than about 600 kD (e.g. in the range from about 120 to about 400 kD). A reducing sugar is one which contains a hemiacetal group that can reduce metal ions or react covalently with lysine and other amino groups in proteins and a nonreducing sugar is one which does not have these properties of a reducing sugar. Examples of reducing sugars are fructose, mannose, maltose, lactose, arabinose, xylose, ribose, rhamnose, 0 galactose and glucose. Non-reducing sugars include sucrose, trehalose, sorbose, melezitose and raffinose. Mannitol, xylitol, erythritol, threitol, sorbitol and glycerol are examples of sugar alcohols. As to sugar acids, these include L-gluconate and metallic salts thereof. Where it is desired that the formulation is freeze-thaw stable, the polyol is preferably one which does not crystallize at freezing temperatures (e.g. -20° C) such that it destabilizes the antibody in 5 the formulation. Non-reducing sugars include, but are not limited to, sucrose and trehalose.

As used herein, buffer refers to a buffered solution that resists changes in pH by the action of its acid-base conjugate components. The buffer of this invention has a pH in the range from about 4.5 to about 7.0; preferably from about 4.8 to about 6.5. Examples of buffers that will control the pH in this range include acetate (e.g. sodium acetate), succinate

Ό (such as sodium succinate), gluconate, histidine, citrate and other organic acid buffers. Where a freeze-thaw stable formulation is desired, the buffer is preferably not phosphate.

In a pharmacological sense, in the context of the present invention, a therapeutically effective amount of an antibody refers to an amount effective in the prevention or treatment of a disorder for the treatment of which the antibody is effective. A disease/disorder is any condition that would benefit from treatment with the antibody. This includes chronic and acute disorders or diseases including those pathological conditions which predispose the mammal to the disorder in question.

A preservative is a compound which can be included in the formulation to essentially reduce bacterial action therein, thus facilitating the production of a multi-use formulation, for example. Examples of potential preservatives include octadecyldimethylbenzyl ammonium chloride, hexamethonium chloride, benzalkonium chloride (a mixture of alkylbenzyldimethylammonium chlorides in which the alkyl groups are

2016277637 21 Dec 2016 long-chain compounds), and benzethonium chloride. Other types of preservatives include aromatic alcohols such as phenol, butyl and benzyl alcohol, alkyl parabens such as methyl or propyl paraben, catechol, resorcinol, cyclohexanol, 3-pentanol, and m-cresol. The most preferred preservative herein is benzyl alcohol.

The present invention also provides pharmaceutical compositions comprising one or more antibodies, together with at least one physiologically acceptable carrier or excipient. Pharmaceutical compositions may comprise, for example, one or more of water, buffers (e.g., neutral buffered saline or phosphate buffered saline), ethanol, mineral oil, vegetable oil, dimethylsulfoxide, carbohydrates (e.g., glucose, mannose, sucrose or dextrans), mannitol, proteins, adjuvants, polypeptides or amino acids such as glycine, antioxidants, chelating agents such as EDTA or glutathione and/or preservatives. As noted above, other active ingredients may (but need not) be included in the pharmaceutical compositions provided herein.

A carrier is a substance that may be associated with an antibody prior to administration to a patient, often for the purpose of controlling stability or bioavailability of the compound. Carriers for use within such formulations are generally biocompatible, and may also be biodegradable. Carriers include, for example, monovalent or multivalent molecules such as serum albumin (e.g., human or bovine), egg albumin, peptides, polylysine and polysaccharides such as aminodextran and polyamidoamines. Carriers also include solid

Ό support materials such as beads and microparticles comprising, for example, polylactate polyglycolate, poly(lactide-co-glycolide), polyacrylate, latex, starch, cellulose or dextran. A carrier may bear the compounds in a variety of ways, including covalent bonding (either directly or via a linker group), noncovalent interaction or admixture.

Pharmaceutical compositions may be formulated for any appropriate manner of administration, including, for example, ocular, intranasal, otic, sublingual, transdermal, topical, oral, nasal, rectal or parenteral administration. In certain embodiments, compositions in a form suitable for oral use are preferred. Such forms include, for example, pills, tablets, troches, lozenges, aqueous or oily suspensions, dispersible powders or granules, emulsion, hard or soft capsules, or syrups or elixirs. Within yet other embodiments, compositions provided herein may be formulated as a lyophilizate. The term parenteral as used herein includes subcutaneous, intradermal, intravascular (e.g., intravenous), intramuscular, spinal, intracranial, intrathecal and intraperitoneal injection, as well as any similar injection or infusion technique.

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In certain embodiments, an antibody of the invention can be delivered directly to the eye by ocular tissue injection such as periocular, conjunctival, subtenon, intracameral, intravitreal, intraocular, subretinal, subconjunctival, retrobulbar, or intracanalicular injections; by direct application to the eye using a catheter or other placement device such as 5 a retinal pellet, intraocular insert, suppository or an implant comprising a porous, non-porous, or gelatinous material; by topical ocular drops or ointments; or by a slow release device in the cul-de-sac or implanted adjacent to the sclera (transscleral) or in the sclera (intrascleral) or within the eye. Intracameral injection may be through the cornea into the anterior chamber to allow the agent to reach the trabecular meshwork. Intracanalicular injection may be into the 0 venous collector channels draining Schlemm's canal or into Schlemm's canal.

For ophthalmic delivery, an antibody of the invention may be combined with ophthalmologic ally acceptable preservatives, co-solvents, surfactants, viscosity enhancers, penetration enhancers, buffers, sodium chloride, or water to form an aqueous, sterile ophthalmic suspension or solution. Topical ophthalmic products may be packaged, for 5 example, in multidose form. Preservatives may thus be required to prevent microbial contamination during use. Suitable preservatives include: chlorobutanol, methyl paraben, propyl paraben, phenylethyl alcohol, edetate disodium, sorbic acid, polyquaternium-1, or other agents known to those skilled in the art. Such preservatives are typically employed at a level of from 0.001 to 1.0% w/v. Unit dose compositions of the present invention will be Ό sterile, but typically unpreserved. Such compositions, therefore, generaffy will not contain preservatives.

In certain embodiments, compositions intended to be administered topically to the eye are formulated as eye drops or eye ointments, wherein the total amount of antibody will be about 0.001 to 1.0% (w/w). Preferably, the amount of TNFa antibody is about 0.01 to about

1.0% (w/w).

Compositions of the invention in certain circumstances will be administered as solutions for topical administration. Aqueous solutions are generally preferred, based on ease of formulation, as well as a patient's ability to easily administer such compositions by means of instilling one to two drops of the solutions in the affected eyes. However, the compositions may also be suspensions, viscous or semi-viscous gels, or other types of solid or semi-solid compositions.

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Compositions intended for oral use may be prepared according to any method known to the art for the manufacture of pharmaceutical compositions and may contain one or more agents, such as sweetening agents, flavoring agents, coloring agent, and preserving agents in order to provide appealing and palatable preparations. Tablets contain the active ingredient 5 in admixture with physiologically acceptable excipients that are suitable for the manufacture of tablets. Such excipients include, for example, inert diluents (e.g., calcium carbonate, sodium carbonate, lactose, calcium phosphate or sodium phosphate), granulating and disintegrating agents (e.g., com starch or alginic acid), binding agents (e.g., starch, gelatin or acacia) and lubricating agents (e.g., magnesium stearate, stearic acid or talc). The tablets 0 may be uncoated or they may be coated by known techniques to delay disintegration and absorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monosterate or glyceryl distearate may be employed.

Formulations for oral use may also be presented as hard gelatin capsules wherein the 5 active ingredient is mixed with an inert solid diluent (e.g., calcium carbonate, calcium phosphate or kaolin), or as soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium (e.g., peanut oil, liquid paraffin or olive oil). Aqueous suspensions contain the antibody in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients include suspending agents (e.g., sodium

Ό carboxymethylcellulose, methylcellulose, hydropropylmethylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia); and dispersing or wetting agents (e.g., naturally-occurring phosphatides such as lecithin, condensation products of an alkylene oxide with fatty acids such as polyoxyethylene stearate, condensation products of ethylene oxide with long chain aliphatic alcohols such as heptadecaethyleneoxycetanol, condensation products of ethylene oxide with partial esters derived from fatty acids and a hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides such as polyethylene sorbitan monooleate). Aqueous suspensions may also comprise one or more preservatives, for example ethyl or n-propyl p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents, and one or more sweetening agents, such as sucrose or saccharin. Syrups and elixirs may be formulated with sweetening agents, such as glycerol, propylene glycol, sorbitol, or sucrose. Such formulations may also comprise one or more demulcents, preservatives, flavoring agents, and/or coloring agents.

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Oily suspensions may be formulated by suspending the active ingredients in a vegetable oil (e.g., arachis oil, olive oil, sesame oil, or coconut oil) or in a mineral oil such as liquid paraffin. The oily suspensions may contain a thickening agent such as beeswax, hard paraffin, or cetyl alcohol. Sweetening agents, such as those set forth above, and/or flavoring 5 agents may be added to provide palatable oral preparations. Such suspensions may be preserved by the addition of an anti-oxidant such as ascorbic acid.

Dispersible powders and granules suitable for preparation of an aqueous suspension by the addition of water provide the active ingredient in admixture with a dispersing or wetting agent, suspending agent and one or more preservatives. Suitable dispersing or 0 wetting agents and suspending agents are exemplified by those already mentioned above. Additional excipients, for example sweetening, flavoring and coloring agents, may also be present.

Pharmaceutical compositions may also be in the form of oil-in-water emulsions. The oily phase may be a vegetable oil (e.g., olive oil or arachis oil), a mineral oil (e.g., liquid paraffin), or a mixture thereof. Suitable emulsifying agents include naturally-occurring gums (e.g., gum acacia or gum tragacanth), naturally-occurring phosphatides (e.g., soy bean, lecithin, and esters or partial esters derived from fatty acids and hexitol), anhydrides (e.g., sorbitan monoleate), and condensation products of partial esters derived from fatty acids and hexitol with ethylene oxide (e.g., polyoxyethylene sorbitan monoleate). An emulsion may

Ό also comprise one or more sweetening and/or flavoring agents.

The pharmaceutical composition may be prepared as a sterile injectible aqueous or oleaginous suspension in which the modulator, depending on the vehicle and concentration used, is either suspended or dissolved in the vehicle. Such a composition may be formulated according to the known art using suitable dispersing, wetting agents and/or suspending agents such as those mentioned above. Among the acceptable vehicles and solvents that may be employed are water, 1,3-butanediol, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils may be employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed, including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid may be used in the preparation of injectible compositions, and adjuvants such as local anesthetics, preservatives and/or buffering agents can be dissolved in the vehicle.

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Pharmaceutical compositions may be formulated as sustained release formulations (i.e., a formulation such as a capsule that affects a slow release of modulator following administration). Such formulations may generally be prepared using well known technology and administered by, for example, oral, rectal, or subcutaneous implantation, or by 5 implantation at the desired target site. Carriers for use within such formulations are biocompatible, and may also be biodegradable; preferably the formulation provides a relatively constant level of modulator release. The amount of an antibody contained within a sustained release formulation depends upon, for example, the site of implantation, the rate and expected duration of release and the nature of the disease/disorder to be treated or 0 prevented.

Anti-TNFa antibodies provided herein can be administered in an amount that achieves a concentration in a body fluid (e.g., blood, plasma, serum, CSF, synovial fluid, lymph, cellular interstitial fluid, tears or urine) that is sufficient to detectably bind to TNF and prevent or inhibit TNF-mediated diseases/disorders. A dose is considered to be effective if it 5 results in a discernible patient benefit as described herein. Preferred systemic doses range from about 0.1 mg to about 140 mg per kilogram of body weight per day (about 0.5 mg to about 7 g per patient per day), with oral doses generally being about 5-20 fold higher than intravenous doses. The amount of antibody that may be combined with the carrier materials to produce a single dosage form will vary depending upon the host treated and the particular Ό mode of administration. Dosage unit forms will generally contain between from about 1 mg to about 500 mg of an active ingredient.

In certain embodiments, pharmaceutical compositions may be packaged for treating conditions responsive to an antibody directed to TNF. Packaged pharmaceutical compositions may include a container holding an effective amount of at least one antibody as described herein and instructions (e.g., labeling) indicating that the contained composition is to be used for treating a disease/disorder responsive to one antibody following administration in the patient.

The antibodies of the present invention can also be chemically modified. Preferred modifying groups are polymers, for example an optionally substituted straight or branched chain polyalkene, polyalkenylene, or polyoxyalkylene polymer or a branched or unbranched polysaccharide. Such effector group may increase the half-life of the antibody in vivo. Particular examples of synthetic polymers include optionally substituted straight or branched chain poly(ethyleneglycol) (PEG), poly(propyleneglycol), poly(vinylalcohol) or derivatives

2016277637 21 Dec 2016 thereof. Particular naturally occurring polymers include lactose, amylose, dextran, glycogen or derivatives thereof. The size of the polymer may be varied as desired, but will generally be in an average molecular weight range from 500Da to 50000Da. For local application where the antibody is designed to penetrate tissue, a preferred molecular weight of the polymer is 5 around 5000Da. The polymer molecule can be attached to the antibody, for example to the Cterminal end of a Fab fragment heavy chain via a covalently linked hinge peptide as described in WOO 194585. Regarding the attachment of PEG moieties, reference is made to “Poly(ethyleneglycol) Chemistry, Biotechnological and Biomedical Applications”, 1992, J. Milton Harris (ed), Plenum Press, New York and “Bioconjugation Protein Coupling 0 Techniques for the Biomedical Sciences”, 1998, M. Aslam and A. Dent, Grove Publishers, New York.

After preparation of the antibody of interest as described above, the pharmaceutical formulation comprising it is prepared. The antibody to be formulated has not been subjected to prior lyophilization and the formulation of interest herein is an aqueous formulation.

Preferably the antibody in the formulation is an antibody fragment, such as an scFv. The therapeutically effective amount of antibody present in the formulation is determined by taking into account the desired dose volumes and mode(s) of administration, for example. From about 0.1 mg/ml to about 50 mg/ml, preferably from about 0.5 mg/ml to about 25 mg/ml and most preferably from about 2 mg/ml to about 10 mg/ml is an exemplary antibody

Ό concentration in the formulation.

An aqueous formulation is prepared comprising the antibody in a pH-buffered solution as described above. The buffer concentration can be from about 1 mM to about 50 mM, preferably from about 5 mM to about 30 mM, depending, for example, on the buffer and the desired isotonicity of the formulation.

A polyol, which acts as a tonicifier and may stabilize the antibody, is included in the formulation. In preferred embodiments, the formulation does not contain a tonicifying amount of a salt such as sodium chloride, as this may cause the antibody to precipitate and/or may result in oxidation at low pH. In preferred embodiments, the polyol is a non-reducing sugar, such as sucrose or trehalose. The polyol is added to the formulation in an amount which may vary with respect to the desired isotonicity of the formulation. Preferably the aqueous formulation is isotonic, in which case suitable concentrations of the polyol in the formulation are in the range from about 1% to about 15% w/ν, preferably in the range from about 2% to about 10% whv, for example. However, hypertonic or hypotonic formulations

2016277637 21 Dec 2016 may also be suitable. The amount of polyol added may also alter with respect to the molecular weight of the polyol. For example, a lower amount of a monosaccharide (e.g. mannitol) may be added, compared to a disaccharide (such as trehalose).

A surfactant may also be added to the antibody formulation. Exemplary surfactants 5 include nonionic surfactants such as polysorbates (e.g. polysorbates 20, 80 etc) or poloxamers (e.g. poloxamer 188). Typically, the amount of surfactant added is such that it reduces aggregation of the formulated antibody/antibody derivative and/or minimizes the formation of particulates in the formulation and/or reduces adsorption. For example, the surfactant may be present in the formulation in an amount from about 0.001% to about 0.5%, preferably 0 from about 0.005% to about 0.2% and most preferably from about 0.01% to about 0.1%.

In one embodiment, a formulation contains the above-identified agents (i.e. antibody, buffer, polyol and surfactant) and is essentially free of one or more preservatives, such as benzyl alcohol, phenol, m-cresol, chlorobutanol and benzethonium Cl. In another embodiment, a preservative may be included in the formulation, particularly where the 5 formulation is a multidose formulation. The concentration of preservative may be in the range from about 0.1% to about 2%, most preferably from about 0.5% to about 1%. One or more other pharmaceutically acceptable carriers, excipients or stabilizers such as those described in Remington's Pharmaceutical Sciences 21st edition, Osol, A. Ed. (2006) may be included in the formulation provided that they do not adversely affect the desired characteristics of the Ό formulation. Acceptable carriers, excipients or stabilizers are non-toxic to recipients at the dosages and concentrations employed and include; additional buffering agents; co-solvents; antioxidants including ascorbic acid and methionine; chelating agents such as EDTA; metal complexes (e.g. Zn-protein complexes); biodegradable polymers such as polyesters; and/or salt-forming counterions such as sodium.

The formulations to be used for in vivo administration must be sterile. This is readily accomplished by filtration through sterile filtration membranes, prior to, or following, preparation of the formulation.

The formulation is administered to a mammal in need of treatment with the antibody, preferably a human, in accord with known methods, such as intravenous administration as a bolus or by continuous infusion over a period of time, by intramuscular, intraperitoneal, intracerobrospinal, subcutaneous, intra-articular, intrasynovial, intrathecal, oral, topical, or inhalation routes, or other routes as described herein. In certain embodiments, the formulation

2016277637 21 Dec 2016 is administered to the mammal by intravenous administration. For such purposes, the formulation may be injected using a syringe or via an IV line, for example.

The appropriate dosage (therapeutically effective amount) of the antibody will depend, for example, on the condition to be treated, the severity and course of the condition, 5 whether the antibody is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the antibody, the type of antibody used, and the discretion of the attending physician. The antibody is suitably administered to the patient at one time or over a series of treatments and may be administered to the patient at any time from diagnosis onwards. The antibody may be administered as the sole treatment or 0 in conjunction with other drugs or therapies useful in treating the condition in question.

As a general proposition, the therapeutically effective amount of the antibody administered will be in the range of about 0.1 to about 100 mg/kg of patient body weight whether by one or more administrations, with the typical range of antibody used being about 0.3 to about 20 mg/kg, more preferably about 0.3 to about 15 mg/kg, administered daily, for 5 example. However, other dosage regimens may be useful. The progress of this therapy is easily monitored by conventional techniques.

In certain embodiments, pharmaceutical compositions comprising an anti-TNFa antibody of the invention are administered to a patient suffering from a TNF-mediated disorder.

Ό In another embodiment of the invention, an article of manufacture is provided comprising a container which holds the aqueous pharmaceutical formulation of the present invention and optionally provides instructions for its use. Suitable containers include, for example, bottles, vials and syringes. The container may be formed from a variety of materials such as glass or plastic. An exemplary container is a 3-20 cc single use glass vial.

Alternatively, for a multidose formulation, the container may be 3-100 cc glass vial. The container holds the formulation and the label on, or associated with, the container may indicate directions for use. The article of manufacture may further include other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters, needles, syringes, and package inserts with instructions for use.

The contents of any patents, patent applications, and references cited throughout this specification are hereby incorporated by reference in their entireties.

2016277637 21 Dec 2016

Unless otherwise required by context, singular terms used herein shall include pluralities and plural terms shall include the singular.

EXAMPLES

The present disclosure is further illustrated by the following examples, which should not be construed as further limiting. The contents of all figures and all references, patents and published patent applications cited throughout this application are expressly incorporated herein by reference in their entireties.

Throughout the examples, the following materials and methods were used unless otherwise stated.

General Materials and Methods

In general, the practice of the present invention employs, unless otherwise indicated, conventional techniques of chemistry, molecular biology, recombinant DNA technology, immunology (especially, e.g., antibody technology), and standard techniques of polypeptide preparation. See, e.g., Sambrook, Fritsch and Maniatis, Molecular Cloning: Cold Spring Harbor Laboratory Press (1989); Antibody Engineering Protocols (Methods in Molecular Biology), 510, Paul, S., Humana Pr (1996); Antibody Engineering: A Practical Approach (Practical Approach Series, 169), McCafferty, Ed., Irl Pr (1996); Antibodies: A Laboratory

Ό Manual, Harlow et al., C.S.H.L. Press, Pub. (1999); and Current Protocols in Molecular Biology, eds. Ausubel et al., John Wiley & Sons (1992).

Thermostability measurements

Attenuated total reflectance Fourier transform IR (FTIR-ATR) spectra were obtained 25 for various single chains and follow up molecules using the FT-IR Bio-ATR cell in a Tensor Bruker. The molecules were concentrated up to 3mg/ml and dialyzed overnight at 4°C against PBS, pH 6.5 and the buffer flow through was collected as blank. The denaturation profiles were obtained by thermo challenging the molecules with a broad range of temperatures in 5°C steps (25 to 95°C). All spectra manipulations were performed using OPUS software. The main buffer and transient atmospheric (CO2 and H2O) background were substracted from the protein spectrum. The resulting protein spectrum was then baseline corrected and the protein

2016277637 21 Dec 2016 amide I spectra was determined from the width of the widest resolvable peak in the expected region. Second derivative spectra were obtained for the amide I band spectra using a third degree polynomial function with a smoothing function. Changes in protein structure were estimated by amide I second derivative analysis using a linear calibration curve for the initial 5 curve-fit calculations assuming 0% denaturation for the 3 lower measurements and 100% denaturation for the 3 higher measurements. The denaturation profiles were used to approximate midpoints of the thermal unfolding transitions (TM) for every variant applying the Boltzmann sigmoidal model.

Solubility measurements

Relative solubility of various scFv molecules was measured after enhancing protein aggregation and precipitation in presence of ammonium sulfate. Ammonium sulfate was added to the protein in aqueous solutions to yield increments of 5% of saturation in the final mixture salt-protein. The precipitation in the dynamic range was determined empirically and 5 the saturation intervals reduced in this range to 2.5% intervals saturation in the final mixture. After ammonium sulfate addition, samples were gently mixed and centrifuged 30 minutes at 6000rpm. The remaining protein in supernatants was recovered for each ammonium sulfate percentage of saturation. Solubility curves were determined by measuring the protein concentration in the supernatant using NanoDropTM 1000 Spectrophotometer. Ό Measurements of remaining soluble protein in supernatants were normalized and used to estimate midpoints of relative solubility for every variant applying the Boltzmann sigmoidal model.

Short Term Stability test

Protein was examined after two weeks incubation at 40°C for soluble aggregates and degradation products. Proteins with a concentration of lOmg/ml were dialyzed overnight at 4°C against PBS with a broad range of pHs (3.5, 4.5, 5.5, 6.5, 7.0, 7.5 and 8.5). Control protein with the same concentration in standard buffer PBS (pH 6.5) was stored at -80°C during the 2 weeks period. Determination of degradation bands by SDS-PAGE was done at t=0 and t=14d time points and soluble aggregates were assessed in the SEC-HPLC.

Determination of remaining activity after 2 weeks at 40°C was done using Biacore.

2016277637 21 Dec 2016

EXAMPLE 1

Optimization of anti-TNFa scFv antibody, 34rFW1.4, to Reduce Aggregation

The 34rFW1.4 antibody shows a propensity for pH dependent aggregation in solution. 5 The 578rFW1.4 antibody (see International Application WO2009155724), which shares the same framework structure as 34rFW1.4, does not show a propensity for aggregation. Homology models were generated to identify potential residues in the 34rFW1.4 that could be modified to reduce its aggregation propensity as follows.

Variable domain sequences were used to build homology models of the 34rFW1.4 0 antibody and the 578rFW1.4 antibody. To generate the models, BFAST algorithm-based searches were used to identify template structures for the light chain (VF) and heavy chain (VH) variable domain sequences for each antibody separately. BFOSUM80 (matrix for less divergent alignments) was used as the matrix for the alignments due to the high conservation of framework regions in antibodies. Individual templates for each chain (VF/VH) were 5 selected that showed more than 70% identity to the query sequences.

The program MODEFER of the Discovery Studio version 2.5.5 (DS 2.5.5) software (Accelrys, Inc., San Diego, CA) was used to generate 100 scFv models based on the identified variable domain templates. Alignment of the reference antibody sequences to be modelled with template structures were used as input data. 100 models containing all nonΌ hydrogen atoms were generated. The best model structures were selected based on a PDF (Probability Density Function) physical energy score. Relative orientation of VH and VF domain was set to match the one from the variable domain template structure with the highest homology to both (VF and VH) sequences modelled. Alternate conformations in the model were removed, termini were added, and missing side-chain atoms were added. CHARMM forcefield was applied to the scFv models and submitted to 2000 cycles of energy minimization using a RMS Gradient of 0.01 and the Generalized Bom with Molecular Volume (GBMV) as implicit solvent model.

Protein Ionization and residue pK calculations for each of the antibodies were conducted. The calculations were done using the protocol implementation included in

Discovery Studio version 2.5.5 (DS 2.5.5), based on the theory developed by Bashford and Karplus, 1991. The results of protein ionization and residue pK calculations were compared for the two molecules in terms of pKi/₂ of the side chains and titration curves of each

2016277637 21 Dec 2016 titratable residue, including Asp, Glu, Arg, Lys, His, Tyr, Cys, the N-terminal and C terminal residues of the antibodies.

CHARMM forcefield was applied to the scFv models and protonated at pH 7.4, titration curves and pKs of the individual residues were calculated from pH 2 to pH 14 range 5 using pH steps of 0.2. Two conserved Lys residues at positions 47 and 50 in the light chain of the 578rFW1.4 antibody differed compared with the Lys at those positions in the 34rFW1.4 (see Figure 1).

Introduction of preferred substitutions

The Discovery Studio software was used to conduct molecular dynamics simulations to predict mutations that improve the interaction affinity between VL and VH, thereby preventing the domains from falling apart and forming oligomers and or higher order aggregates. The stability of the VL/VH interface of the 34rFW1.4 antibody was estimated as energy terms as free energy G. A CHARMM protocol adaptation (also included in DS 2.5.5) was used to calculate the energy difference between the entire scFv heterodimer complex and the sum of the energies of each of the individual variable domains. The calculations were done in the context of an implicit solvent method using the Generalized Born with Molecular Volume integration (GBMV). The energies of both domains and the complex were calculated, and the output was determined as the difference in energy between the complex

Ό and the sum of the individual domains according to the following calculation: G interface = G(a) - G(b) - G(c), where G(a) is the energy of the antibody, G(b) is the energy of the VL, and G(c) is the energy of the VH.

Arginine (R) was selected as a possible residue substitution for the lysine (K) at positions 47 and 50, because the sidechain pKa value for R (12.5) is higher than pKa of K (10.5). Mutants K47R and K50R were generated by replacing K for R individually at the respective positions. 2000 cycles of energy minimization were performed for residues 10 Angstroms or closer to the area around the mutation to allow the new model molecules to adapt to the change. The implicit solvent model for these energy minimization rounds was GBMV. Predicted average delta G for the mutants was -94 kcal/mol. Therefore contribution of the mutations was estimated to be 4 kcal/mol compared to the parental anti-TNF scFv antibody.

2016277637 21 Dec 2016

Example 2

Stability Analysis of the Optimized 34rFW1.4 Antibody

K50R mutant and K47R mutant were generated in the 34rFW1.4 antibody (which is disclosed in co-pending International Application No. PCT/CH2009/000219, filed June 25, 5 2009, the contents of which are hereby incorporated by reference in its entirety). Another mutant of 34rFW1.4 having additional substitutions to reduce its immunogenicity in vivo was prepared according to the methods described in US Patent Application No. 12/973,968. In particular, the third mutant, designated 34rFW1.4_VLK50R_DHP, contained a serine (S) at heavy chain position 12 (AHo numbering), a threonine (T) at heavy chain position 103 (AHo 0 numbering), and a threonine (T) at heavy chain position 144 (AHo numbering). Stability studies of the parent and mutant 34rFW1.4 antibodies were conducted under accelerated conditions as follows.

The 34rFW1.4 antibody, mutant 34rFW1.4_VL_K50R, and 34rFW1.4_VLK50R_DHP were concentrated up to 20, 40 and 60 mg/mL in phosphate buffered saline (50 mM Na2HPO4, 150 mM NaCl, pH 6.5) formulation and incubated 2 weeks at 40°C. The 34rFW1.4 and 34rFW1.4_K47R antibodies were concentrated up to 20 and 60 mg/mL in phosphate buffered saline (50 mM Na2HPO4, 150 mM NaCl, pH 6.5) formulation and incubated 2 weeks at 40°C. Samples were analyzed before and after 14 days incubation for degradation using 12.5 % sodium dodecyl sulfate-polyacrylamide gel

Ό electrophoresis (SDS-PAGE) under reducing and non-reducing conditions. Size-exclusion high-performance liquid chromatography (SE-HPLC) was used to determine monomer content and soluble aggregates of the samples before and after the incubation period. Monomers were resolved from non-monomeric species on a TSKgel Super SW2000 column (TOSOH Bioscience) and the percentage of monomeric protein was calculated as the area of the monomer peak divided by the total area of all product peaks. The results of the studies for 34rFW1.4 and 34rFW1.4_VLK50R_DHP are shown in Figures 2A-B, 3A-B, and 4A-B, respectively. The results for 34rFW1.4_VL_K50R are shown in Figures 5B, 6B, and 7B. These experiments demonstrated that 34rFW1.4_VLK50R_DHP had a reduced propensitiy for aggregation compared with 34rFW1.4. The mutant 34rFW1.4_K47R also demonstrated such a reduction as shown in Figures 8B and 9B.

In addition, the thermal stability and binding affinities of 34rFW1.4 and 34rFW1.4_VLK50R_DHP antibodies were compared. The results demonstrated that the

2016277637 21 Dec 2016 mutations made to generate the 34rFW1.4_VLK50R_DHP antibody did not affect the stability or binding activity relative to the parent 34rFW1.4 antibody.

EQUIVALENTS

Numerous modifications and alternative embodiments of the present invention will be apparent to those skilled in the art in view of the foregoing description. Accordingly, this description is to be construed as illustrative only and is for the purpose of teaching those skilled in the art the best mode for carrying out the present invention. Details of the structure may vary substantially without departing from the spirit of the invention, and exclusive use of all modifications that come within the scope of the appended claims is reserved. It is intended that the present invention be limited only to the extent required by the appended claims and the applicable rules of law.

All literature and similar material cited in this application, including, patents, patent applications, articles, books, treatises, dissertations, web pages, figures and/or appendices, regardless of the format of such literature and similar materials, are expressly incorporated by reference in their entirety. In the event that one or more of the incorporated literature and similar materials differs from or contradicts this application, including defined terms, term usage, described techniques, or the like, this application controls.

The section headings used herein are for organizational purposes only and are not to

Ό be construed as limiting the subject matter described in any way.

While the present inventions have been described in conjunction with various embodiments and examples, it is not intended that the present teachings be limited to such embodiments or examples. On the contrary, the present inventions encompass various alternatives, modifications, and equivalents, as will be appreciated by those of skill in the art.

The claims should not be read as limited to the described order or elements unless stated to that effect. It should be understood that various changes in form and detail may be made without departing from the scope of the appended claims. Therefore, all embodiments that come within the scope and spirit of the following claims and equivalents thereto are claimed.

2016277637 16 Oct 2018

Claims

THE CLAIMS DEFINING THE INVENTION ARE AS FOLLOWS:

1. An antibody that binds specifically to human TNFa, comprising:

a. a variable light chain comprising a sequence wherein the framework region has at least 90% identity to the sequence of SEQ ID NO: 2, wherein the variable light chain comprises CDR1, CDR2, and CDR3 of SEQ ID NO: 2 and wherein the variable light chain comprises an arginine at AHo position 50; and

b. a variable heavy chain comprising a sequence wherein the framework region has at least 90% identity to the sequence of SEQ ID NO: 5, and wherein the variable heavy chain comprises CDR1, CDR2, and CDR3 of SEQ ID NO: 5.
2. A pharmaceutical composition comprising a therapeutically effective amount of the antibody of claim 1 and a pharmaceutically acceptable carrier.
3. A method of treating a TNFa-mediated disease comprising administering to a subject in need thereof the pharmaceutical composition of claim 2.
4. The method of claim 3, wherein the TNFa-mediated disease is an ocular disorder selected from the group consisting of uveitis, Bechet’s disease, retinitis, dry eye, glaucoma, Sjorgen syndrome, diabetic neuropathy, scleritis, age related macular degeneration and keratitis.
5. The method of claim 3, wherein the pharmaceutical composition is administered by ocular, intranasal, otic, sublingual, transdermal, topical, oral, nasal, rectal or parenteral administration.
6. The method of claim 5, wherein the pharmaceutical composition is administered in a single or divided dose comprising 0.1 to 100 mg of the antibody.
7. The method of claim 4, wherein the TNFa-mediated disease is uveitis or dry eye, and the pharmaceutical composition is administered topically to an eye of the subject.

2016277637 16 Oct 2018
8. An isolated nucleic acid molecule encoding the antibody of claim 1.
9. A vector comprising the nucleic acid molecule of claim 8.
10. A host cell comprising the vector of claim 9.
11. The antibody of claim 1, wherein the antibody is a Fab, Fab', a F(ab)'2, single-chain Fv (scFv), an Fv fragment, or a linear antibody.

12. A bivalent or bispecific molecule comprising the antibody of claim 1.

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3921_ST25 SEQUENCE LISTING <110> ESBATech, an Alcon Biomedical Research Unit LLC Borras, Leonardo Urech, David <120> STABLE AND SOLUBLE ANTIBODIES <130> 3921 US <160> 18 <170> Patentln version 3.4 <210> 1 <211> 231 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (24)..(73)

<223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (89). .(138) <223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (171) ..(220) <223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up

to 50 amino acids can be present <400> : 1 Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Al a Ser Val Gly 1 5 10 15 Asp Arg Val lie lie Thr cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 20 25 30 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Tyr Gin Gin Lys Pro Gly 65 70 75 80 Arg Al a Pro Lys Leu Leu lie Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 85 90 95 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa

Page 1

3921_ST25

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100 105 110 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120 125 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Val Pro Ser Arg Phe 130 135 140 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220 Thr Lys Leu Thr Val Leu Gly 225 230 <210> 2 <211> 112 <212> PRT <213> . Arti fi ci al <220> <223> Synthetic Peptide <400> 2 Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Al a Ser Val Gly 1 5 10 15 Asp Arg Val lie lie Thr cys Gin Ser Ser Gin Ser Val Tyr Gly Asn 20 25 30 lie Trp Met Al a T rp Tyr Gin Gin Lys Pro Gly Arg Al a Pro Lys Leu 35 40 45 Leu lie Tyr Gin Al a Ser Lys Leu Al a Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 65 70 75 80 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Gin Gly Asn Phe Asn Thr 85 90 95

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Gly Asp Arg Tyr Ala Phe Gly Gin Gly Thr Lys Leu Thr Val Leu Gly 100 105 110 <210> 3 <211> 232 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (26)..(75)

<223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (90). .(139) <223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (172) .(221) <223> X can be any natural 1y occurri ng ami no aci d. at 1 east one and up

to 50 amino acids can be present <400> 3

Glu 1 Val Gin Leu Val 5 Glu Ser Gly Gly Gly 10 Leu Val Gin Pro Gly 15 Gly Ser Leu Arg Leu 20 Ser cys Thr Al a Ser 25 Xaa Xaa Xaa Xaa Xaa 30 Xaa Xaa Xaa Xaa Xaa 35 Xaa Xaa Xaa Xaa Xaa 40 Xaa Xaa Xaa Xaa Xaa 45 Xaa Xaa Xaa Xaa Xaa 50 Xaa Xaa Xaa Xaa Xaa 55 Xaa Xaa Xaa Xaa Xaa 60 Xaa Xaa Xaa Xaa Xaa 65 Xaa Xaa Xaa Xaa Xaa 70 Xaa Xaa Xaa Xaa Xaa 75 T rp Val Arg Gin Al a 80 Pro Gly Lys Gly Leu 85 Glu T rp Val Gly Xaa 90 Xaa Xaa Xaa Xaa Xaa 95 Xaa Xaa Xaa Xaa Xaa 100 Xaa Xaa Xaa Xaa Xaa 105 Xaa Xaa Xaa Xaa Xaa 110 Xaa Xaa Xaa Xaa Xaa 115 Xaa Xaa Xaa Xaa Xaa 120 Xaa Xaa Xaa Xaa Xaa 125 Xaa Xaa Xaa Xaa Xaa 130 Xaa Xaa Xaa Xaa Xaa 135 Xaa Xaa Xaa Xaa Arg 140 Phe Thr lie Ser

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Arg Asp Thr Ser Lys Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg 145 150 155 160

Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala Arg Xaa Xaa Xaa Xaa Xaa 165 170 175

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Trp Gly Gin 210 215 220

Gly Thr Leu Val Thr Val Ser Ser 225 230 <210> 4 <211> 232 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (26)..(75)

to 50 amino acids can be present <400> 4

Glu 1 Val Gin Leu Val 5 Glu Ser Gly Gly Gly 10 Leu Val Gin Pro Gly 15 Gly Ser Leu Arg Leu 20 Ser cys Thr Val Ser 25 Xaa Xaa Xaa Xaa Xaa 30 Xaa Xaa Xaa Xaa Xaa 35 Xaa Xaa Xaa Xaa Xaa 40 Xaa Xaa Xaa Xaa Xaa 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa

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3921_ST25

50 55 60

Xaa 65 Xaa Xaa Xaa Xaa Xaa 70 Xaa Xaa Xaa Xaa Xaa 75 T rp Val Arg Gin Al a 80 Pro Gly Lys Gly Leu 85 Glu T rp Val Gly Xaa 90 Xaa Xaa Xaa Xaa Xaa 95 Xaa Xaa Xaa Xaa Xaa 100 Xaa Xaa Xaa Xaa Xaa 105 Xaa Xaa Xaa Xaa Xaa 110 Xaa Xaa Xaa Xaa Xaa 115 Xaa Xaa Xaa Xaa Xaa 120 Xaa Xaa Xaa Xaa Xaa 125 Xaa Xaa Xaa Xaa Xaa 130 Xaa Xaa Xaa Xaa Xaa 135 Xaa Xaa Xaa Xaa Arg 140 Phe Thr lie Ser Lys 145 Asp Thr Ser Lys Asn 150 Thr Val Tyr Leu Gin 155 Met Asn Ser Leu Arg 160 Al a Glu Asp Thr Al a 165 Val Tyr Tyr cys Al a 170 Arg Xaa Xaa Xaa Xaa 175 Xaa Xaa Xaa Xaa Xaa 180 Xaa Xaa Xaa Xaa Xaa 185 Xaa Xaa Xaa Xaa Xaa 190 Xaa Xaa Xaa Xaa Xaa 195 Xaa Xaa Xaa Xaa Xaa 200 Xaa Xaa Xaa Xaa Xaa 205 Xaa Xaa Xaa Xaa Xaa 210 Xaa Xaa Xaa Xaa Xaa 215 Xaa Xaa Xaa Xaa Xaa 220 Xaa T rp Gly Gin Gly Thr Leu Val Thr Val Ser Ser

225 230 <210> 5 <211> 121 <212> PRT <213> Artificial <220>

<223> <400> Syntheti c 5 : Peptide Glu 1 Val Gin Leu Val 5 Glu Ser Gly Gly Gly 10 Ser Val Gin Pro Gly 15 Gly Ser Leu Arg Leu 20 Ser cys Thr Al a Ser 25 Gly Phe Thr lie Ser 30 Arg Ser Tyr T rp lie 35 cys T rp Val Arg Gin 40 Al a Pro Gly Lys Gly 45 Leu Glu T rp

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Val Gly cys Ile Tyr Gly Asp Asn Asp Ile Thr Pro Leu Tyr Al a Asn 50 55 60 T rp Al a Lys Gly Arg Phe Thr Ile Ser Arg Asp Thr Ser Lys Asn Thr 65 70 75 80 Val Tyr Leu Gln Met Asn Ser Leu Arg Al a Glu Asp Thr Al a Thr Tyr 85 90 95 Tyr cys Al a Arg Leu Gly Tyr Al a Asp Tyr Al a Tyr Asp Leu T rp Gly 100 105 110 Gln Gly Thr Thr Val Thr Val Ser Ser

115 120 <210> 6 <211> 5 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <400> 6

Gly Gly Gly Gly Ser 1 5 <210> 7 <211> 20 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <400> 7

Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly 15 10 15

Gly Gly Gly Ser 20 <210> 8 <211> 483 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (24)..(73) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present

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3921_ST25

2016277637 21 Dec 2016 <220>

<221> MISC_FEATURE <222> (89)..(138)

<223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (171) ..(220) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (277) ..(326) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (341) ..(390) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 ami no acids can be present <220> <221> MISC FEATURE <222> (423) ..(483) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 ami no acids can be present

<400> 8

Glu 1 lie Val Met Thr 5 Gin Ser Pro Ser Thr 10 Leu Ser Al a Ser Val 15 Gly Asp Arg Val lie 20 lie Thr cys Xaa Xaa 25 Xaa Xaa Xaa Xaa Xaa 30 Xaa Xaa Xaa Xaa Xaa 35 Xaa Xaa Xaa Xaa Xaa 40 Xaa Xaa Xaa Xaa Xaa 45 Xaa Xaa Xaa Xaa Xaa 50 Xaa Xaa Xaa Xaa Xaa 55 Xaa Xaa Xaa Xaa Xaa 60 Xaa Xaa Xaa Xaa Xaa 65 Xaa Xaa Xaa Xaa Xaa 70 Xaa Xaa Xaa T rp Tyr 75 Gin Gin Lys Pro Gly 80 Arg Al a Pro Lys Leu 85 Leu lie Tyr Xaa Xaa 90 Xaa Xaa Xaa Xaa Xaa 95 Xaa Xaa Xaa Xaa Xaa 100 Xaa Xaa Xaa Xaa Xaa 105 Xaa Xaa Xaa Xaa Xaa 110 Xaa Xaa Xaa Xaa Xaa 115 Xaa Xaa Xaa Xaa Xaa 120 Xaa Xaa Xaa Xaa Xaa 125 Xaa Xaa Xaa Xaa Xaa 130 Xaa Xaa Xaa Xaa Xaa 135 Xaa Xaa Xaa Gly Val 140 Pro Ser Arg Phe

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Ser Gly Ser Gly Ser Gly Thr Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160

Gin Pro Asp Asp Phe Ala Thr Tyr Tyr Cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220

Thr Lys Leu Thr Val Leu Gly Gly Gly Gly Gly Ser Gly Gly Gly Gly 225 230 235 240

Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Val Gin Leu Val 245 250 255

Glu Ser Gly Gly Gly Leu Val Gin Pro Gly Gly Ser Leu Arg Leu Ser 260 265 270

Cys Thr Ala Ser Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 275 280 285

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 290 295 300

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 305 310 315 320

Xaa Xaa Xaa Xaa Xaa Xaa Trp Val Arg Gin Ala Pro Gly Lys Gly Leu 325 330 335

Glu Trp Val Gly Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 340 345 350

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 355 360 365

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 370 375 380

Xaa Xaa Xaa Xaa Xaa Xaa Arg Phe Thr lie Ser Arg Asp Thr Ser Lys 385 390 395 400

Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg Ala Glu Asp Thr Ala 405 410 415

Page 8

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2016277637 21 Dec 2016

Val Tyr Tyr cys 420 Al a Arg Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 425 430 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 435 440 445 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 450 455 460 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Gly Gin Gly Thr Leu Val Thr 465 470 475 480 Val Ser Ser

<210> 9 <211> 483 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (24)..(73) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <220>

<221> MISC_FEATURE <222> (89)..(138) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <220>

<221> MISC_FEATURE <222> (171)..(220) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <220>

<221> MISC_FEATURE <222> (277)..(326) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <220>

<221> MISC_FEATURE <222> (341)..(390) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <220>

<221> MISC_FEATURE <222> (423)..(483) <223> X can be any naturally occurring amino acid, at least one and up to 50 amino acids can be present <400> 9

Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser Val Gly Page 9

2016277637 21 Dec 2016

3921_ST25

15 10 15

Asp Arg Val lie lie Thr Cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 20 25 30

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40 45

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Trp Tyr Gin Gin Arg Pro Gly 65 70 75 80

Lys Ala Pro Lys Leu Leu lie Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 85 90 95

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 100 105 110

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120 125

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Val Pro Ser Arg Phe 130 135 140

Ser Gly Ser Gly Ser Gly Thr Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160

Gin Pro Asp Asp Phe Ala Thr Tyr Tyr Cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220

Thr Lys Leu Thr Val Leu Gly Gly Gly Gly Gly Ser Gly Gly Gly Gly 225 230 235 240

Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Val Gin Leu Val 245 250 255

Glu Ser Gly Gly Gly Leu Val Gin Pro Gly Gly Ser Leu Arg Leu Ser 260 265 270

Cys Thr Val Ser Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Page 10

3921_ST25

2016277637 21 Dec 2016

275 280 285 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 290 295 300 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 305 310 315 320 Xaa Xaa Xaa Xaa Xaa Xaa T rp Val Arg Gin Al a Pro Gly Lys Gly Leu 325 330 335 Glu T rp Val Gly Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 340 345 350 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 355 360 365 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 370 375 380 Xaa Xaa Xaa Xaa Xaa Xaa Arg Phe Thr lie Ser Lys Asp Thr Ser Lys 385 390 395 400 Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg Al a Glu Asp Thr Al a 405 410 415 Val Tyr Tyr cys Al a Arg Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 420 425 430 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 435 440 445 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 450 455 460 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Gly Gin Gly Thr Leu Val Thr 465 470 475 480

Val Ser Ser <210> 10 <211> 253 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <400> 10

Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser Val Gly 15 10 15

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Asp Arg Val lie 20 lie Thr cys Gin Ser Ser Gin Ser Val 25 Tyr 30 Gly Asn lie T rp Met Al a T rp Tyr Gin Gin Lys Pro Gly Arg Al a Pro Lys Leu 35 40 45 Leu lie Tyr Gin Al a Ser Lys Leu Al a Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 65 70 75 80 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Gin Gly Asn Phe Asn Thr 85 90 95 Gly Asp Arg Tyr Al a Phe Gly Gin Gly Thr Lys Leu Thr Val Leu Gly 100 105 110 Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly 115 120 125 Gly Gly Gly Ser Glu Val Gin Leu Val Glu Ser Gly Gly Gly Ser Val 130 135 140 Gin Pro Gly Gly Ser Leu Arg Leu Ser cys Thr Al a Ser Gly Phe Thr 145 150 155 160 lie Ser Arg Ser Tyr T rp lie cys T rp Val Arg Gin Al a Pro Gly Lys 165 170 175 Gly Leu Glu T rp Val Gly cys lie Tyr Gly Asp Asn Asp lie Thr Pro 180 185 190 Leu Tyr Al a Asn T rp Al a Lys Gly Arg Phe Thr lie Ser Arg Asp Thr 195 200 205 Ser Lys Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg Al a Glu Asp 210 215 220 Thr Al a Thr Tyr Tyr cys Al a Arg Leu Gly Tyr Al a Asp Tyr Al a Tyr 225 230 235 240 Asp Leu T rp Gly Gin Gly Thr Thr Val Thr Val Ser Ser

245 250

<210> 11 <211> 231 <212> PRT <213> Arti fi ci al <220> <223> Synthetic Peptide

Page 12

3921_ST25

2016277637 21 Dec 2016 <220>

<221> MISC_FEATURE <222> (24)..(73)

to 50 amino acids can be present <400> 11

Glu 1 Ile Val Met Thr 5 Gin Ser Pro Ser Thr 10 Leu Ser Al a Ser Val 15 Gly Asp Arg Val Ile 20 Ile Thr cys Xaa Xaa 25 Xaa Xaa Xaa Xaa Xaa 30 Xaa Xaa Xaa Xaa Xaa 35 Xaa Xaa Xaa Xaa Xaa 40 Xaa Xaa Xaa Xaa Xaa 45 Xaa Xaa Xaa Xaa Xaa 50 Xaa Xaa Xaa Xaa Xaa 55 Xaa Xaa Xaa Xaa Xaa 60 Xaa Xaa Xaa Xaa Xaa 65 Xaa Xaa Xaa Xaa Xaa 70 Xaa Xaa Xaa T rp Tyr 75 Gin Gin Lys Pro Gly 80 Lys Al a Pro Lys Leu 85 Leu Ile Tyr Xaa Xaa 90 Xaa Xaa Xaa Xaa Xaa 95 Xaa Xaa Xaa Xaa Xaa 100 Xaa Xaa Xaa Xaa Xaa 105 Xaa Xaa Xaa Xaa Xaa 110 Xaa Xaa Xaa Xaa Xaa 115 Xaa Xaa Xaa Xaa Xaa 120 Xaa Xaa Xaa Xaa Xaa 125 Xaa Xaa Xaa Xaa Xaa 130 Xaa Xaa Xaa Xaa Xaa 135 Xaa Xaa Xaa Gly Val 140 Pro Ser Arg Phe Ser 145 Gly Ser Gly Ser Gly 150 Al a Glu Phe Thr Leu 155 Thr Ile Ser Ser Leu 160 Gin Pro Asp Asp Phe 165 Al a Thr Tyr Tyr cys 170 Xaa Xaa Xaa Xaa Xaa 175 Xaa Xaa Xaa Xaa Xaa 180 Xaa Xaa Xaa Xaa Xaa 185 Xaa Xaa Xaa Xaa Xaa 190 Xaa Xaa

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Xaa Xaa Xaa 195 Xaa Xaa Xaa Xaa Xaa 200 Xaa Xaa Xaa Xaa Xaa 205 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly

210 215 220

Thr Lys Leu Thr Val Leu Gly 225 230 <210> 12 <211> 231 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (24)..(73)

to 50 amino acids ; can be present <400> : 12 Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Al a Ser Val Gly 1 5 10 15 Asp Arg Val lie lie Thr cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 20 25 30 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Tyr Gin Gin Lys Pro Gly 65 70 75 80 Lys Al a Pro Lys Leu Leu lie Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 85 90 95 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa

Page 14

3921_ST25

2016277637 21 Dec 2016

100 105 110

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120 125 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Val Pro Ser Arg Phe 130 135 140 Ser Gly Ser Gly Ser Gly Thr Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220 Thr Lys Leu Thr Val Leu Gly

225 230 <210> 13 <211> 231 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (24)..(73)

to 50 amino acids can be present <400> 13

Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser Val Gly 15 10 15

Page 15

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2016277637 21 Dec 2016

Asp Arg Val lie 20 lie Thr cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 25 30 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Tyr Gin Gin Arg Pro Gly 65 70 75 80 Lys Al a Pro Lys Leu Leu lie Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 85 90 95 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 100 105 110 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120 125 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Val Pro Ser Arg Phe 130 135 140 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220 Thr Lys Leu Thr Val Leu Gly

225 230 <210> 14 <211> 111 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <400> 14

Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser Val Gly 15 10 15

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2016277637 21 Dec 2016

Asp Arg Val lie lie Thr Cys Gin Ser Ser Gin Ser Val Tyr 30 Gly Asn 20 25 lie T rp Met Al a T rp Tyr Gin Gin Arg Pro Gly Lys Al a Pro Lys Leu 35 40 45 Leu lie Tyr Gin Al a Ser Lys Leu Al a Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 65 70 75 80 Gin Pro Asp Asp Phe Al a Thr Tyr Tyr cys Gin Gly Asn Phe Asn Thr 85 90 95 Gly Asp Arg Tyr Al a Phe Gly Gin Gly Thr Lys Leu Thr Val Leu

100 105 110 <210> 15 <211> 483 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <220>

<221> MISC_FEATURE <222> (423)..(483)

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2016277637 21 Dec 2016

3921_ST25 <223> X can be any naturally occurring amino acid, at least to 50 amino acids can be <400> 15

Glu lie Val Met Thr Gin Ser Pro 1 5

Asp Arg Val lie lie Thr Cys Xaa 20

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 65 70

Lys Ala Pro Lys Leu Leu lie Tyr 85

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 100

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 130 135

Ser Gly Ser Gly Ser Gly Thr Glu 145 150

Gin Pro Asp Asp Phe Ala Thr Tyr 165

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 210 215

Thr Lys Leu Thr Val Leu Gly Gly 225 230

Ser Gly Gly Gly Gly Ser Gly Gly 245

present Ser Thr 10 Leu Ser Al a Ser Val 15 Gly Xaa 25 Xaa Xaa Xaa Xaa Xaa 30 Xaa Xaa Xaa Xaa Xaa Xaa Xaa 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa 60 Xaa Xaa Xaa Xaa Xaa T rp Tyr 75 Gin Gin Arg Pro Gly 80 Xaa Xaa 90 Xaa Xaa Xaa Xaa Xaa 95 Xaa Xaa 105 Xaa Xaa Xaa Xaa Xaa 110 Xaa Xaa Xaa Xaa Xaa Xaa Xaa 125 Xaa Xaa Xaa Xaa Xaa Gly Val 140 Pro Ser Arg Phe Phe Thr Leu 155 Thr lie Ser Ser Leu 160 Tyr cys 170 Xaa Xaa Xaa Xaa Xaa 175 Xaa Xaa 185 Xaa Xaa Xaa Xaa Xaa 190 Xaa Xaa Xaa Xaa Xaa Xaa Xaa 205 Xaa Xaa Xaa Xaa Xaa Xaa Xaa 220 Phe Gly Gin Gly Gly Gly Gly 235 Ser Gly Gly Gly Gly 240 Gly Gly 250 Ser Glu Val Gin Leu 255 Val

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Glu Ser Gly Gly 260 Gly Leu Val Gin Pro 265 Gly Gly Ser Leu Arg 270 Leu Ser cys Thr Al a 275 Ser Xaa Xaa Xaa Xaa 280 Xaa Xaa Xaa Xaa Xaa 285 Xaa Xaa Xaa Xaa Xaa 290 Xaa Xaa Xaa Xaa Xaa 295 Xaa Xaa Xaa Xaa Xaa 300 Xaa Xaa Xaa Xaa Xaa 305 Xaa Xaa Xaa Xaa Xaa 310 Xaa Xaa Xaa Xaa Xaa 315 Xaa Xaa Xaa Xaa Xaa 320 Xaa Xaa Xaa Xaa Xaa 325 Xaa T rp Val Arg Gin 330 Al a Pro Gly Lys Gly 335 Leu Glu T rp Val Gly 340 Xaa Xaa Xaa Xaa Xaa 345 Xaa Xaa Xaa Xaa Xaa 350 Xaa Xaa Xaa Xaa Xaa 355 Xaa Xaa Xaa Xaa Xaa 360 Xaa Xaa Xaa Xaa Xaa 365 Xaa Xaa Xaa Xaa Xaa 370 Xaa Xaa Xaa Xaa Xaa 375 Xaa Xaa Xaa Xaa Xaa 380 Xaa Xaa Xaa Xaa Xaa 385 Xaa Xaa Xaa Xaa Xaa 390 Arg Phe Thr lie Ser 395 Arg Asp Thr Ser Lys 400 Asn Thr Val Tyr Leu 405 Gin Met Asn Ser Leu 410 Arg Al a Glu Asp Thr 415 Al a Val Tyr Tyr cys 420 Al a Arg Xaa Xaa Xaa 425 Xaa Xaa Xaa Xaa Xaa 430 Xaa Xaa Xaa Xaa Xaa 435 Xaa Xaa Xaa Xaa Xaa 440 Xaa Xaa Xaa Xaa Xaa 445 Xaa Xaa Xaa Xaa Xaa 450 Xaa Xaa Xaa Xaa Xaa 455 Xaa Xaa Xaa Xaa Xaa 460 Xaa Xaa Xaa Xaa Xaa 465 Xaa Xaa Xaa Xaa Xaa 470 Xaa Xaa T rp Gly Gin 475 Gly Thr Leu Val Thr 480

Val Ser Ser

<210> 16 <211> 483 <212> PRT <213> Arti fi ci al <220> <223> Synthetic Peptide

Page 19

3921_ST25

2016277637 21 Dec 2016 <220>

<221> MISC_FEATURE <222> (24)..(73)

<223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <220> <221> MISC FEATURE <222> (89). .(138) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <220> <221> MISC FEATURE <222> (171) ..(220) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <220> <221> MISC FEATURE <222> (277) ..(326) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <220> <221> MISC FEATURE <222> (341) ..(390) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <220> <221> MISC FEATURE <222> (423) ..(483) <223> X can be any naturally occurring ami no aci d. at 1 east one and up to 50 amino acids can be present <400> 16

Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Al a Ser Val Gly 1 5 10 15 Asp Arg Val lie lie Thr cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 20 25 30 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 35 40 45 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Tyr Gin Gin Arg Pro Gly 65 70 75 80 Lys Al a Pro Lys Leu Leu lie Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 85 90 95 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa

100

105

110

Page 20

2016277637 21 Dec 2016

3921_ST25

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 115 120 125

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Val Pro Ser Arg Phe 130 135 140

Ser Gly Ser Gly Ser Gly Thr Glu Phe Thr Leu Thr lie Ser Ser Leu 145 150 155 160

Gin Pro Asp Asp Phe Ala Thr Tyr Tyr Cys Xaa Xaa Xaa Xaa Xaa Xaa 165 170 175

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185 190

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 195 200 205

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Phe Gly Gin Gly 210 215 220

Thr Lys Leu Thr Val Leu Gly Gly Gly Gly Gly Ser Gly Gly Gly Gly 225 230 235 240

Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Val Gin Leu Val 245 250 255

Glu Ser Gly Gly Gly Leu Val Gin Pro Gly Gly Ser Leu Arg Leu Ser 260 265 270

Cys Thr Val Ser Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 275 280 285

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 290 295 300

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 305 310 315 320

Xaa Xaa Xaa Xaa Xaa Xaa Trp Val Arg Gin Ala Pro Gly Lys Gly Leu 325 330 335

Glu Trp Val Gly Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 340 345 350

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 355 360 365

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 370 375 380

Page 21

3921_ST25

2016277637 21 Dec 2016

Xaa Xaa Xaa Xaa 385 Xaa Xaa 390 Arg Phe Thr Ile Ser 395 Lys Asp Thr Ser Lys 400 Asn Thr Val Tyr Leu Gln Met Asn Ser Leu Arg Al a Glu Asp Thr Al a 405 410 415 Val Tyr Tyr cys Al a Arg Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 420 425 430 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 435 440 445 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 450 455 460 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa T rp Gly Gln Gly Thr Leu Val Thr 465 470 475 480 Val Ser Ser

<210> 17 <211> 253 <212> PRT <213> Artificial <220>

<223> Synthetic Peptide <400> 17

Glu Ile 1 Val Met Thr 5 Gln Ser Pro Ser Thr 10 Leu Ser Ala Ser Val 15 Gly Asp Arg Val Ile Ile Thr cys Gln Ser Ser Gln Ser Val Tyr Gly Asn 20 25 30 Ile T rp Met Al a T rp Tyr Gln Gln Arg Pro Gly Lys Al a Pro Lys Leu 35 40 45 Leu Ile Tyr Gln Al a Ser Lys Leu Al a Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr Ile Ser Ser Leu 65 70 75 80 Gln Pro Asp Asp Phe Al a Thr Tyr Tyr cys Gln Gly Asn Phe Asn Thr 85 90 95 Gly Asp Arg Tyr Al a Phe Gly Gln Gly Thr Lys Leu Thr Val Leu Gly 100 105 110 Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly 115 120 125

Page 22

3921_ST25

2016277637 21 Dec 2016

Gly Gly 130 Gly Ser Glu Val Gin 135 Leu Val Glu Ser Gly Gly 140 Gly Ser Val Gin Pro Gly Gly Ser Leu Arg Leu Ser cys Thr Ala Ser Gly Phe Thr 145 150 155 160 lie Ser Arg Ser Tyr Trp lie Cys Trp Val Arg Gl n Al a Pro Gly Lys 165 170 175 Gly Leu Glu Trp Val Gly cys lie Tyr Gly Asp Asn Asp lie Thr Pro 180 185 190 Leu Tyr Ala Asn Trp Ala Lys Gly Arg Phe Thr lie Ser Arg Asp Thr 195 200 205 Ser Lys Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg Al a Glu Asp 210 215 220 Thr Ala Thr Tyr Tyr Cys Al a Arg Leu Gly Tyr Ala Asp Tyr Ala Tyr 225 230 235 240 Asp Leu Trp Gly Gin Gly Thr Thr Val Thr Val Ser Ser 245 250 <210> 18 <211> . 253 <212> PRT <213> , 4rti fi ci al <220> <223> : Synthetic Peptide <400> 18 Glu lie Val Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val lie lie Thr cys Gin Ser Ser Gin Ser Val Tyr Gly Asn 20 25 30 lie Trp Met Ala Trp Tyr Gin Gl n Lys Pro Gly Lys Ala Pro Lys Leu 35 40 45 Leu lie Tyr Gin Ala Ser Lys Leu Ala Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Gly Ser Gly Al a Glu Phe Thr Leu Thr lie Ser Ser Leu 65 70 75 80 Gin Pro Asp Asp Phe Ala Thr Tyr Tyr cys Gin Gly Asn Phe Asn Thr 85 90 95

Page 23

3921_ST25

2016277637 21 Dec 2016

Gly Asp Arg Tyr 100 Ala Phe Gly Gin Gly 105 Thr Lys Leu Thr Val 110 Leu Gly Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly 115 120 125 Gly Gly Gly Ser Glu Val Gin Leu Val Glu Ser Gly Gly Gly Ser Val 130 135 140 Gin Pro Gly Gly Ser Leu Arg Leu Ser cys Thr Al a Ser Gly Phe Thr 145 150 155 160 lie Ser Arg Ser Tyr T rp lie cys T rp Val Arg Gin Al a Pro Gly Lys 165 170 175 Gly Leu Glu T rp Val Gly cys lie Tyr Gly Asp Asn Asp lie Thr Pro 180 185 190 Leu Tyr Al a Asn T rp Al a Lys Gly Arg Phe Thr lie Ser Arg Asp Thr 195 200 205 Ser Lys Asn Thr Val Tyr Leu Gin Met Asn Ser Leu Arg Al a Glu Asp 210 215 220 Thr Al a Thr Tyr Tyr cys Al a Arg Leu Gly Tyr Al a Asp Tyr Al a Tyr 225 230 235 240 Asp Leu T rp Gly Gin Gly Thr Thr Val Thr Val Ser Ser

245 250

Page 24