AU2012204040B2 - Reagent cartridge mixing tube - Google Patents

Abstract

Embodiments of the invention relate to a clinical instrument analyzer system for the automated analysis of patient samples. In one embodiment, the analyzer may be used to 5 analyze bodily fluid samples, such as blood, plasma, serum, urine or cerebrospinal fluid, for example. Embodiments of the invention relate to an apparatus and method for suspending magnetic particles accumulated on the floor of a mixing tube and depositing the magnetic particles in bodily fluid samples. 3504373_1 (GHMatters) P81539.AU.I

Description

AUSTRALIA Patents Act 1990 COMPLETE SPECIFICATION Standard Patent Applicant(s): BIOKIT, S.A. Invention Title: Reagent cartridge mixing tube The following statement is a full description of this invention, including the best method for performing it known to me/us: REAGENT CARTRIDGE MIXING TUBE FIELD OF THE INVENTION [00011 The present invention relates to a clinical instrument analyzer system and specifically to a reagent cartridge mixing tube. 5 BACKGROUND OF THE INVENTION [00021 Separation, isolation, and concentration are process steps common to a chemical analysis. Often, these steps are taken to remove interfering substances so that a subsequent chemical analysis can be performed. This separation stage can be performed in several ways including solvent extraction, solvent evaporation, and 10 resin exchange. Magnetic separation, another technique for removing interfering substances, is a process of separation, isolation, and concentration where the sought for substance is attached or bound to magnetic particles. The magnetic particles offer advantages of handling including speed, convenience, and low energy input. They are particularly suited to handling small samples. 15 [0003] In order to administer a magnetic separation, a threshold number of magnetic particles needs to be present in the solution to be measured. However, magnetic particles are more dense than most of the other particles in the solutions in which they are mixed. Therefore, the magnetic particles will accumulate at the bottom of their holding receptacles. Previous reagent cartridges for holding magnetic particle 20 solutions or suspensions have used continuous mixing to ensure that appropriate concentrations of magnetic particles are distributed throughout- the magnetic solution. However, continuous mixing can be expensive, inefficient, and prone to mechanical failures. The present invention addresses these shortcomings of prior art magnetic particle mixing tubes. 25 SUMMARY OF THE INVENTION [0004] In satisfaction of the above-mentioned needs and others, the present teachings relate to a system for suspending magnetic particles. - la - [00051 In one aspect there is provided a system for suspending particles, said system comprising: a reagent cartridge comprising a reagent holder for holding a plurality of tubes; a plurality of tubes comprising, a mixing tube for holding particles rotatably mounted in said holder, said mixing tube comprising a top end and a lower 5 section positioned on an end opposite to said top end, an interior surface, an exterior surface, a first agitating member, and a second agitating member, each of said first agitating member and said second agitating member formed by extending said interior surface of the mixing tube into the lumen of said mixing tube, the dimensions and positioning of said first agitating member aligned with a first 10 longitudinal groove on said exterior surface of said mixing tube and the dimensions and positioning of said second agitating member aligned with a second longitudinal groove on said exterior of said mixing tube, said mixing tube further comprising at least one slot and a cylindrical member, said slot longitudinally positioned on said lower section of said mixing tube; and said reagent holder comprising a body 15 including a first groove and a second groove. 100061 In one embodiment the particles are magnetizable. 100071 In one embodiment, the first agitating member is opposite the second agitating 20 member. In another embodiment, the mixing tube has three agitating members. The first agitating member and said second agitating member may be substantially triangular, semi-circular, or rectangular in cross-section. In another embodiment, the first agitating member and the second agitating member are blades. 25 100081 In one embodiment, the linear actuator includes a third pin and the mixing tube includes a second slot for engaging the third pin of the linear actuator. 100091 The mixing tube may be cylindrical, frustoconical, sealed, detachable from the holder, and/or extrusion molded. 30 [00101 In one embodiment, the system includes a plurality of reagent tubes. The reagent tubes may be detachable from the holder and/or may be substantially rectangular in cross-section or cylindrical. 35 100111 Another aspect of the present teachings provides a method of suspending particles in solution comprising: dispensing a magnetic particle solution into a mixing tube, wherein said mixing tube comprises a cylinder with a first agitating 2 3504373_1 (GHMatters) P81539 AUA1 member and a second agitating member, a top end and a lower section positioned on an end opposite to said top end, said lower section of said mixing tube further comprising at least one slot, said at least one slot longitudinally positioned on said lower section of said mixing tube and having one end of said slot positioned and 5 open on the lower section of said tube; engaging said lower section of said mixing tube with a motor; rotating said mixing tube via said motor according to a mixing protocol; and, disengaging said motor from said mixing tube. [0011al In another aspect there is provided a system for suspending particles, said 10 system comprising: a reagent cartridge comprising a reagent holder for holding a plurality of tubes; said plurality of tubes comprising, a mixing tube for holding particles, said mixing tube having a volumetric capacity in the range of about I milliliter to about 100 milliliters, rotatably mounted in said holder, said mixing tube comprising a top end and a lower section positioned on an end opposite to said top 15 end, an interior surface, an exterior surface, at least a first agitating member, and at least one slot longitudinally positioned on said lower section of said mixing tube with one end of said slot positioned and open on the lower section of said tube; and, a motor operatively connectable to said slot, said motor having a linear actuator for engaging said slot and rotating said mixing tube, wherein rotation of said mixing tube 20 actuates said agitating member thereby suspending said particles. [00121 The mixing protocol may include rotating the mixing tube in a first direction for a first period of time, and then rotating the mixing tube in a second direction for a second period of time. In another embodiment, the mixing protocol may include two 25 phases: a first phase and a second phase. The first phase may include rotating the mixing tube one full rotation in both a first direction and a second direction. The second phase may include alternating the direction of rotation fifteen times. [0012a] In another aspect there is provided a method of manufacturing a mixing tube 30 comprising: molding a mixing tube for holding particles rotatably mounted in a holder, said mixing tube comprising a top end and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, at least a first agitating member, and at least one slot longitudinally positioned on the lower section of said mixing tube wherein one end of said slot is positioned and open on 35 the lower section of said tube. 3 3504373_1 (GHMatter) P81539.AU.i [0013] Another aspect of the invention relates to method of manufacturing a mixing tube including molding a mixing tube for holding particles rotatably mounted in a holder. The mixing tube includes a top end and a lower section positioned on an end 5 opposite to the top end, an interior surface, an exterior surface, a first agitating member, and a second agitating member. The first agitating member and the second agitating member extend from the interior surface into the lumen of the mixing tube. The dimensions and positioning of the first agitating member correspond to a first longitudinal groove on the exterior surface of the mixing tube. The dimensions and 10 positioning of the second agitating member correspond to a second longitudinal groove on the exterior of said mixing tube. The mixing tube further includes at least one slot and a cylindrical member, longitudinally positioned on the lower section of the mixing tube. In one embodiment, the mixing tube is extrusion molded. 15 [0013a] Another aspect of the invention provides a system for suspending particles, said system comprising: a reagent cartridge comprising a reagent holder for holding a plurality of tubes; said plurality of tubes comprising a mixing tube for holding particles, rotatably mounted in said holder, said mixing tube comprising a top end, and a lower section positioned on an end opposite to said top end, an interior 20 surface, an exterior surface, said mixing tube further comprising at least one slot positioned on said lower section of said mixing tube. [0013b] Another aspect of the invention provides a system for suspending particles, said system comprising: a reagent cartridge comprising a reagent holder for holding 25 a plurality of tubes; said plurality of tubes comprising a mixing tube for holding particles, rotatably mounted in said holder, said mixing tube comprising a top end, and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, said mixing tube further comprising at least one slot longitudinally positioned on said lower section of said mixing tube with one end of 30 said slot positioned and open on the lower section of said tube. [0013c] Another aspect of the invention provides a system for suspending particles, comprising: a reagent cartridge comprising a reagent holder for holding a plurality of tubes; said plurality of tubes comprising, a mixing tube for holding particles, 35 rotatably mounted in said holder, said mixing tube comprising a top end, and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, and at least one slot longitudinally positioned on said lower section of said 3a 3504373_2 (GHMatters) P81539.AU.1 mixing tube with one end of said slot positioned and open on the lower section of said tube. [0013d] Another aspect of the invention provides a method of suspending particles in 5 solution comprising: dispensing a magnetic particle solution into a mixing tube, wherein said mixing tube comprises a cylinder, a top end and a lower section positioned on an end opposite to said top end, said lower section of said mixing tube further comprises at least one slot longitudinally positioned on said lower section of said mixing tube and having one end of said slot positioned and open on the lower 10 section of said tube; engaging said lower section of said mixing tube with a motor; rotating said mixing tube via said motor according to a mixing protocol; and disengaging said motor from said mixing tube. [0013e] Another aspect of the invention provides a method of manufacturing a 15 mixing tube comprising: molding a mixing tube for holding particles rotatably mounted in a holder, said mixing tube comprising a top end and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, and at least one slot longitudinally positioned on said lower section of said mixing tube wherein one end of said slot is positioned and open on the lower section 20 of said tube. BRIEF DESCRIPTION OF THE DRAWINGS [00141 These embodiments and other aspects of this invention will be readily apparent 25 from the detailed description below and the appended drawings, which are meant to illustrate and not to limit the invention, and in which: [00151 Figure IA is a top view of a clinical instrument analyzer system according to an exemplary embodiment of the present invention. 30 [00161 Figure IB is a perspective view of a reagent station according to an exemplary embodiment of the present invention. 3b 3504373_2 (GHMatters) P81539.AU.1 [0017] Figure 2A is a perspective view of a reagent cartridge according to an exemplary embodiment of the present invention. [00181 Figure 2B is a perspective view of the reagent cartridge without a piercing cap assembly and holder according to an exemplary embodiment of the present 5 invention. [00191 Figure 2C is a perspective view of a piercing cap assembly according to an exemplary embodiment of the present invention. [00201 Figure 2D is a perspective view of the piercing cap according to an exemplary embodiment of the present invention. 10 [0021] Figure 2E is a perspective view of the reagent cartridge holder according to an exemplary embodiment of the present invention. [00221 Figure 2F is a perspective view of an access slide according to an exemplary embodiment of the present invention. [00231 Figure 3A illustrates a cross-section of the mixing tube illustrated in Figure 15 3C taken at 3A-3A according to an exemplary embodiment of the present invention. [00241 Figure 3B is a side perspective view of the exterior surface according to an exemplary embodiment of the present invention. [00251 Figure 3C is another side perspective view of the mixing tube according to an exemplary embodiment of the present invention. 20 [0026] Figure 3D is another side perspective view of the mixing tube according to an exemplary embodiment of the present invention. [0027] Figure 3E is another side perspective view of the mixing tube according to an exemplary embodiment of the present invention. [0028] Figure 3F is another side perspective view of the mixing tube according to an 25 exemplary embodiment of the present invention. [00291 Figure 4 is a top-view of a mixing tube according to an exemplary embodiment of the present invention. [00301 Figure 5 is a bottom-view of a mixing tube according to an exemplary embodiment of the present invention. -4- [00311 Figure 6 is a perspective view of a motor and the reagent cartridge according to an exemplary embodiment of the present invention. DESCRIPTION [0032] The present invention will be more completely understood through the 5 following description, which should be read in conjunction with the attached drawings. In this description, like numbers refer to similar elements within various embodiments of the present invention. Within this description, the claimed invention will be explained with respect to embodiments. The skilled artisan will readily appreciate that the methods and systems described herein are merely 10 exemplary and that variations can be made without departing from the spirit and scope of the invention. [0033] Embodiments of the invention relate to a clinical instrument analyzer system for the automated analysis of patient samples. In one embodiment, the analyzer may be used to analyze target biomolecules in bodily fluid samples, such as blood, 15 plasma, serum, urine, or cerebrospinal fluid. The clinical instrument analyzer system according to the invention, for example, automates immunochemical assays for the detection of a target biomolecule in a patient sample. To detect the target biomolecule, a first antibody specific to the target biomolecule is labeled with a luminometric marker. A luminometric marker is a substance that is detectable in a 20 luminometer. A second antibody specific to the target biomolecule is attached to a magnetic particle. The antibodies attached to the magnetic particles and the antibodies attached to the luminometric marker recognize the target biomolecules and bind to them in an immunochemical reaction. As a result, specific complexes composed of magnetic particles, luminometric markers, and target biomolecules are 25 formed. These specific complexes then may be examined in a luminometer. [0034] Embodiments of the invention also relate to an apparatus and method for uniformly suspending magnetic particles in solution in a mixing tube before aspirating an aliquot of the magnetic particle solution into a vial holding a patient sample. Subsequently, the presence and/or amount of target biomolecule will be 30 determined in a diagnostic assay. The magnetic particles, due to their weight, tend to accumulate at the bottom of the mixing tube over time. As used herein, -5suspending the magnetic particles in the mixing tube refers to the removal of the particles from the mixing tube bottom and suspension of the magnetic particles in a solution in the mixing tube. Uniform dispersal of the magnetic particles in the solution is important to clinical analysis because any variability in the distribution of 5 the magnetic particles in the solution will affect the accuracy of the diagnostic assay. [00351 Figure 1A is a top view of the clinical instrument analyzer system according to an embodiment of the present invention. The illustrated clinical instrument analyzer system 20 contains one or more stations or modules for treatment and analysis of patient samples contained in a vial (not shown in Figure 1). The vial 10 may be a cuvette, tube or any other receptacle suitable for holding a sample (not shown in Figure 1). In one embodiment, the clinical instrument analyzer system 20 includes at least the following: a vial loader 22, a sample station (not shown) for adding a sample into a vial, a reagent station 23 for adding one or more reagents into the vial, a plurality of pipettes 24 for providing wash and rinse fluid to the vial, a 15 carousel 28 for receiving one or more vials from the vial loader and distributing the vials, a magnetic washing module 30, a luminometer 32, and a heater module 25 to incubate the vial. [0036] In one embodiment, the vial loader 22 holds a plurality of vials. The vial loader 22 may, for example, load vials onto the carousel 28 as described in the 20 concurrently filed U.S. patent application entitled "Apparatus and Methods for Dispensing Sample Holders" (Attorney Docket No. INL-098). In some embodiments, the vial loader 22 comprises a rotatable carousel with vertical slots to hold stacks of vials. The vials may be stacked in a sleeve, for example, and the sleeve may be inserted into the vial loader 22. The vial loader 22 expels a vial from 25 the sleeve on to the carousel 28. [0037] With continued reference to Figure 1A, the carousel 28, in one embodiment, holds, and/or distributes a plurality of vials to various stations or modules such as, for example, the sample station, the reagent station 23, the magnetic washing module 30, the heater module, or the luminometer 32 in the clinical instrument 30 analyzer system 20. The exemplary carousel 28 is operably joined to a motor and rotates, for example. A vial in the carousel 28 may be presented to any one of a -6plurality of stations or modules proximate to it. In one embodiment, a transfer arm (not shown) permits movement of vials from the carousel 28 to the various stations or modules of the clinical instrument analyzer system 20. [0038] A sample adding station (not shown) in one embodiment, deposits the 5 selected sample in the vial. [0039] With continued reference to Figure 1A, the magnetic washing module 30 is configured to permit washing of the magnetic particles present in the vial. The magnetic washing module 30 includes one or more magnet stations, containing magnetic arrays. A magnetic wash of the particles in the vial may be performed by 10 securing the vial proximate to the magnetic array. The magnetic field of the magnet array in the magnet station penetrates the wall of the vial and attracts the magnetic particles present in the specific complexes toward the one or more magnetic arrays. Thus, the specific complexes clump together on the wall of the vial wall proximate to the magnet arrays, forming a pellet of specific complexes. While the particles are 15 attracted to the magnetic arrays, the vial may be injected and/or aspirated with wash or rinse solution through the use of one or more pipettes to rinse and remove the non-complexed particles and the solution in the vial except for the specific complexes. The pellet of specific complexes is analyzed in the luminometer 32 for the magnitude of luminescence. The magnitude of luminescence is indicative of 20 the concentration of the target molecule in the patient sample. [0040] With continued reference to Figure 1A, depending on the analysis to be conducted on the patient sample and which target biomolecule is to be analyzed, the reagent station 23 adds, for example, a rinse fluid, one or more antibodies against the target biomolecule, reagents for triggering a chemiluminescent reaction, buffers, 25 other reagents, a luminometric marker substance containing luminogens, and/or magnetizable particles. [0041] In some embodiments, the magnetizable particles are made of iron or any other magnetic or magnetizable material. In certain embodiments, the magnetic particles are paramagnetic, such that when the magnets are removed, the particles 30 exhibit zero magnetization. The magnetic particles may be substantially uniform in diameter and may have a grain size, for example, in the range of 1-10 pm, 1.0 pm, -7- 8.0 pm, or 4.7 pm, preferably. In one embodiment, for example, the exterior of the magnetizable particles are coated with a latex layer that contains the specific antibody against the target biomolecule. The magnetizable particles are held in a solution in a reagent mixing tube described in greater detail below. The solution 5 may contain water, rinse fluids, or any other liquid necessary for the analysis. [00421 Figure 1B is a perspective view of the reagent station 23 according to an exemplary embodiment of the invention, the reagent station 23 includes a reagent station housing 33, a bar code scanner 37, and one or more reagent cartridges 75, wherein each reagent cartridge has a bar code 82. The reagent station housing 33 10 may be, for example, a bowl shaped container made of cast metal or plastic. One or more reagent cartridges 75 are stored within the reagent station bowl 33. For example, the reagent cartridges 75 may be radially distributed from the center of the bowl-shaped housing 33. In one embodiment, the reagent cartridges 75 are inserted in a rotation carousel (not shown) positioned in the reagent station housing 33. The 15 reagent station housing 33 may be temperature and/or humidity controlled. [00431 The reagent cartridge 75 contains one or more reagents which are injected into a vial. In one embodiment, the reagent cartridge 75 is wedge or pie shaped such that a plurality of reagent cartridges 75 may fit into the bowl-shaped reagent station housing 33. For example, five to thirty-five reagent cartridges 75, or more 20 specifically, ten, twenty or thirty, or more reagent cartridges 75 may be placed into the reagent station housing 33 at one time, depending on the size of the reagent station housing 33. [00441 With continued reference to Figure 1B, the bar code scanner 37 permits a user to index and track the various reagent cartridges 75 in the reagent station 25 housing 33. The bar code scanner 37 may read the bar code 82 placed on the side of the reagent cartridge 75 facing the bar code scanner 37. The bar code reading is transmitted to a computer processor that alerts the user of the clinical instrument analyzer system 20 (not shown) of the location of the various reagent cartridges 75 in the reagent station housing 33. Additionally, the bar code scanner 37 permits the 30 user to electronically select various reagent cartridges 75 and the reagents contained therein for the desired target biomolecule analysis of the patient sample. The user -8may request specific reagents and the bar code scanner 37 identifies the corresponding reagent cartridge 75 containing those reagents. Thus, the bar code label 82 may be used to distinguish between different reagents in the reagent cartridges 75 and may assist a user to determine the location of certain reagents 5 within the reagent station 23. [00451 The reagent cartridge will now be described in more detail with reference to Figures 2A-2C. Figure 2A is a perspective view of a reagent cartridge according to an embodiment of the present invention. The illustrated reagent cartridge 75 includes, for example, a channel 68, a holder 76, a base 77, a mixing tube 78, one or 10 more reagent tubes 80, the bar code label 82, and a piercing cap assembly 84. The piercing cap assembly 84 includes a slide cap 69, a piercing cap 71, an access slide 72, including a spring 70, an evaporation cover 81 (not shown), and a leg 79. The piercing cap assembly 84 and its components will be discussed in more detail below. In some embodiments, the reagent cartridge 75 is a disposable package with one or 15 more, preferably four, sealed tubes holding reagent or magnetic particles in a solution. Once the reagent cartridges 75 are placed within the reagent station 23 (not shown), the reagent cartridges 75 may be cooled, for example, to a temperature in the range of about, 4-8*C, more particularly at about six degrees Celsius. The chilling of the reagent cartridges 75 may improve the reagent shelf life. 20 [0046] Figure 2B is a perspective view of the reagent cartridge 75 illustrating, the base 77, the mixing tube 78 and the reagent tubes 80, according to an embodiment of the invention. [0047] With reference to Figure 2B, the reagent tubes 80 are closed at the bottom end with an open, sealable top and contain the reagents necessary for performing 25 certain clinical analyses. The cross-sectional shape through the short axis of the reagent tubes 80 may be of any shape to facilitate the storing of reagents, such as rectangular, square, circular, oval, or substantially circular. The reagent tubes 80 are sized to fit in the reagent cartridge 75 within the reagent station 23 (see Figure 1). The reagent tubes 80 may be made of any relatively inert substance for storing 30 reagents, for example, molded polypropylene, plastic, metal, or ceramic. The capacity of the reagent tubes 80 varies depending on their size but may range from -9about 1 milliliter to about 100 milliliters. Once appropriate reagents are introduced into the reagent tubes 80, in one embodiment, the top of the reagent tubes 80 are sealed, for example, with an aluminum polyester membrane. The reagent tubes 80 shown in Figure 2B are sealed. The seal may be frangible. A plurality of 5 protrusions 85 (see Figure 2C) of the piercing cap assembly 84, described below, are positioned on the piercing cap assembly 84 to permit the user to break the seal when desirable. [0048] With continued reference to Figure 2B, the reagent tubes 80 and the mixing tube 78 are inserted into the base 77 either before or after the reagents are added into 10 the tube. The base 77 may be molded plastic, e.g., ABS, sized to hold the required reagent tubes 80. In one embodiment, indentations or recesses 67, sized and shaped to engage the base of the reagent tubes 80 and the mixing tube 78 in the base 77, hold the reagent tubes 80 and the mixing tube 78 into the base 77. The reagent tubes 80 may be locked into the base 77. The lock may be, for example, a snap-lock. The 15 reagent tubes 80 and the mixing tube 78 may also be detachable from the base 77. [0049] Still referring to Figure 2B, in one embodiment according to the invention, the mixing tube 78 contains the magnetic particle solution. The mixing tube 78 discussed in greater detail below, may be sized and made of material similar to the reagent tubes 80. Alternatively, other materials may be used to make the mixing 20 tube 78. The magnetic particle solution is introduced into the mixing tube 78 either before or after the mixing tube is inserted into the base 77 of the reagent cartridge 75. Once a sufficient volume of magnetic particle solution in the mixing tube 78 is reached, the top of the mixing tube 78 may then be sealed. The mixing tube 78 shown in Figure 2B is sealed. The seal may be frangible. The plurality of 25 protrusions 85 (see Figure 2C) of the piercing cap assembly 84, described below, may break the seal. In one embodiment, the seal is an aluminum polyester membrane. [00501 The mixing tube 78 may be rotatably mounted, i.e., the mixing tube 78 may rotate while attached to the base 77, in an indentation or recess. In one embodiment, 30 the mixing tube 78 is operably connected to a rotatable member operably joined to a -10motor. The rotatable member rotates the mixing tube 78 clockwise or counter clockwise in order to suspend the magnetic particles in solution. [00511 Figure 2C is a top perspective view of the piercing cap assembly 84. As noted above, the piercing cap assembly 84 includes the piercing cap 71, the slide cap 5 69, and the access slide 72, which includes the evaporation cover 81, the spring 70 and the leg 79. The access slide 72 is sandwiched between the piercing cap 71 and the slide cap 69. The slide cap 69 is a flat section of plastic with access holes to permit user to access the mixing tube 78 and reagent tubes 80. The slide cap 69 is sized to fit securely over the piercing cap 71 through, for example, ultrasonic 10 welding or heat staking. Heat staking is a method of connecting separate components using plastic stud protruding from one component that fit into holes in a second component. The stud is then deformed through the softening of the plastic to form a head which mechanically locks the two components together. [0052] The access slide 72, including the evaporation cover 81, the spring 70, and 15 the leg 79 slides over the piercing cap 71 to permit access to the mixing tube 78 and reagent tubes 80 (not shown). The evaporation cover 81 is a flat rectangular section of plastic with access holes for permitting selective access to the mixing tube 78 and reagent tubes 80. When the evaporation cover 81 is in a first position with its holes aligned over the mixing tube 78 and reagent tubes 80 and the access holes of the 20 slide cap 69, the evaporation cover 81 permits user access to the mixing tube 78 and reagent tubes 80. When it is in its second position, the access holes in the evaporation cover 81 are not aligned with the mixing tube 78 and the reagent tubes 80, thus sealing the mixing tube 78 and the reagent tubes 80 from the outside air and hindering evaporation of the solutions contained in the mixing tube 78 and the 25 reagents in the reagent tubes 80. [0053] Figure 2D is a perspective view of the bottom of the piercing cap 71. The piercing cap 71, a plastic cap sized to fit over the mixing tube 78 and reagent tubes 80, includes a lid 83, a first notch 73 and a second notch 73A, and one or more protrusions 85. The protrusions 85 may extend downward from the lid 83 of the 30 piercing cap 71 into the reagent tubes 80 and mixing tube 78 (not shown). The -11protrusions 85 may be hollow cylinders with a beveled free end 66 to permit the puncturing of the frangible seal of the mixing tube 78 or reagent tube 80. [0054] Figure 2E is a perspective view of the holder 76. The holder 76, comprised of plastic, has a first groove 74 and a second groove (not shown) on the inside of the 5 holder 76 for engagement with the piercing cap (not shown). The first groove 74 corresponds with first notch 73 (not shown) of the piercing cap and the second groove (not shown) corresponds to the second notch 73A (not shown) of the piercing cap. The interaction of the first notch 73 and the second notch 73A with the first groove 74 and the second groove will be discussed in more detail below. 10 [00551 With reference again to Figure 2A, in typical operation, the piercing cap assembly 84 is positioned over the top of the reagent tubes 80 and the mixing tube 78. In one embodiment, the piercing cap assembly 84 is connected to the holder 76. The piercing cap assembly 84 may be mounted to the base 77 by hooking the leg 79 of the spring 70 into the channel 68 at the front of the base 77. The leg 79 may then 15 slide in the channel 68, allowing the access slide 72 to move and permit access to the mixing tube 78 and reagent tubes 80. Alternatively, the piercing cap assembly 84 may be separable from the holder 76. [0056] Referring to Figure 2D, the protrusions 85 on the piercing cap assembly 84 may be hollow or the piercing cap assembly 84 may include one or more 20 perforations to permit a pipette to pass through the protrusion 85 to aspirate reagents and magnetic particle solution from the reagent tubes 80 (not shown) and the mixing tube 78 (not shown) without requiring the removal of the piercing cap assembly 84. When depressed, for example, by a user, the protrusions 85 of the piercing cap assembly 84 puncture the seal on the reagent tubes 80 and the mixing tube 78. The 25 piercing cap 71 remains depressed through the first notch 73 and the second notch 73A, located on the piercing cap 71, mating with the first groove 74 and the second groove (not shown) located in the holder 76 (shown in Figure 2E). Once punctured, various pipettes may be inserted through one or more protrusions 85 to aspirate reagents from the reagent tubes 80 and magnetic particle solution from the mixing 30 tube 78. -12- [0057] Figure 2F is a perspective view of the access slide, comprised of plastic, of the piercing cap assembly. The spring 70 of the access slide 72 is, for example, a leaf spring that is biased to keep the reagent cartridge 75 closed when not in use. This access slide 72 is biased closed to minimize evaporation and contamination. 5 Thus, once the reagent tubes 80 and mixing tube 78 have been punctured by the protrusions 85 of the piercing cap, evaporation of reagents and mixing tube solution can be prevented by sealing the reagent cartridge 75 with the evaporation cover 81 of the access slide 72. [0058] As shown in Figure 2A, to open the reagent cartridge 75 the spring 70 may 10 be deflected by an attached stepper motor (not shown). Then, the leg 79 of the access slide 72 slides in the channel 68 of the base 77, thus sliding open the evaporation cover 81 (not shown) to allow user access to the reagent tubes 80 and mixing tube 78. [0059] Figures 3A-3F depict a mixing tube 78 in more detail according to an 15 embodiment of the present invention. Referring to Figures 3A-3F, in some embodiments, the mixing tube 78 is generally a cylinder including a waU 98, an interior surface 95, an opening at the top end 92, a lower section 96, an upper section 87, a floor 94, and a base 89. The upper section 87 extends from the top end 92 to the floor 94 of the mixing tube 78. The lower section 96 extends from the floor 94 20 to the base 89, which is on the opposite end of the tube 78 from the top end 92. [0060] With reference to Figure 3A, a cross-section of the mixing tube through the plane 3A-3A' as shown in Figure 3C, the tube floor 94 is the bottom most portion of the mixing tube 78 that holds the magnetic particle solution. The tube floor 94 may be, for example, flat, convex, or concave. 25 [0061] The lower section 96 of the mixing tube 78, as shown in Figures 3A, 3C, and 3E, is the section of the mixing tube 78 between the tube floor 94 and the base 89. With reference to Figure 3E, the lower section 96 of the mixing tube 78 contains a longitudinally positioned cylindrical member 99, a first slot 100, a second slot 101, a first flange 102, and a second flange 103. The lower section 96 may extend 30 approximately 5 to 25 millimeters beyond the tube floor 94. In one embodiment, a rotatable member may engage the lower section 96 to rotate the mixing tube 78. -13- [0062] With continued reference to Figures 3A-F, the wall 98 of the mixing tube 78 may be composed of molded polypropylene, plastic, ceramic, metal or any other inert material capable of storing a solution with magnetic particles. The capacity of the mixing tube 78 varies depending on their size but may range from about 1 5 milliliter to about 100 milliliters. The short-axis cross-sectional shape of the wall 98 may be circular. In one embodiment, the mixing tube 78 has a constant diameter or width from the opening 92 to the base 89 of the mixing tube 78. In a particular embodiment, the mixing tube is frustoconical, i.e., such that the opening 92 has a larger diameter than the base 89. 10 [00631 With reference to Figures 3A-F, the base 89 of the mixing tube 78 may be substantially flat to prevent unwanted oscillations of the mixing tube 78 during mixing and storage. [0064] With reference to Figure 3A, a cross-section of the mixing tube through the plane 3A-3A' as shown in Figure 3C of an exemplary mixing tube 78 including a 15 first agitating member 86 and second agitating member 88 is illustrated. The first agitating member 86 and the second agitating member 88 agitate the magnetic particles in solution in the mixing tube 78. The first agitating member 86 and the second agitating member 88 protrude into the lumen 97 of the mixing tube 78 and may extend from the mixing tube floor 94 to the mixing tube top end 92. 20 Alternatively, the first agitating member 86 and the second agitating member 88 may extend from the mixing tube floor 94 to any point below the mixing tube top end 92. [00651 With reference to Figure 3A, the shape of the first agitating member 86 and the second agitating member 88 may be of any shape known to one of skill in the art 25 that will create turbulence in the lumen 97 of the mixing tube 78 upon rotation of the mixing tube 78. For example, the cross-section of the first agitating member 86 and the second agitating member 88 may be triangular, circular, substantially circular, rectangular, square, or any other cross-sectional shape that will create turbulence in a solution held within the mixing tube 78. An exemplary first agitating member 86 30 and an exemplary second agitating member 88 may be flat or blade-like. Although only a first agitating member 86 and a second agitating member 88 are shown, -14multiple agitating members, such as three, four, five, or more, may be used and the invention is not limited to the illustrated embodiments. [00661 In some embodiments, the first agitating member 86 and the second agitating member 88 may be formed by molding the inner surface 95 of the wall 98 of the 5 mixing tube 78. As used herein formed by molding the inner surface 95 of the wall 98 means that the first agitating member 86 and the second agitating member 88 are not affixed to the tube 78, but are formed when the wall 98 of the mixing tube 78 is molded, for example, by extrusion molding. [0067] When the mixing tube 78 is constructed via a molding process, the first 10 agitating member 86 and the second agitating member 88 are formed by forcing the interior wall 95 of mixing tube 78 into the lumen 97 at certain sections of the outer wall. When viewed from the outside of mixing tube 78, the sections of the inner wall 95 that extend into the lumen 97 appear as grooves in the outer wall 98. A first groove 90 and a second groove 91 are depicted in Figures 3B, 3C, 3E and 3F. The 15 first groove 90 and second groove 91 correspond to a first agitating member 86 and a second agitating member 88, as viewed from the lumen 97. Since no additional material is added to the mixing tube 78 to form the first agitating member 86 and the second agitating member 88, the wall 98 has a constant thickness along the length of the mixing tube 78, i.e. the wall 98 is not thicker where the first agitating member 86 20 and the second agitating member 88 are located. A constant thickness ensures even cooling and shaping during manufacturing. [00681 Alternatively, the mixing tube 78 may be formed without the first groove 90 and the second groove 91 (not shown). In this embodiment, the first agitating member 86 and the second agitating member 88 are attached to the interior surface 25 95 of the wall 98 by an adhesive, thermal bonding, or a mechanical locking mechanism such as a snap-lock joint, for example. [0069] With reference to Figures 3A, 3B, 3D, 3E, and 3F, in one embodiment, the first groove 90 and the second groove 91 originate at the base 89 of the mixing tube 78 as the first slot 100 and the second slot 101 in the lower portion 96 of the mixing 30 tube 78 as shown in Figures 3E and 3F, respectively, and extend along the length of the mixing tube 78 to or nearly to the top end 92. In one embodiment, the first -15groove 90 and the second groove 91 extend approximately two thirds of the length of the mixing tube 78 from the base 89 toward the top end 92 of the mixing tube 78. [00701 Figure 4 is a top-view of the mixing tube according to an embodiment of the present invention. This view shows the first agitating member 86 and the second 5 agitating member 88 protruding into the lumen 97 of the mixing tube. [0071] Figure 5 is a bottom-view of the mixing tube according to an embodiment of the present invention. The wall 98 of the lower section 96, may not be one continuous section. Rather, in one embodiment, the wall 98 has one or more slots, for example, the first slot 100 and the second slot 101, which may eventually form 10 the first groove 90 and second groove 91 (shown in Figure 3E and 3F). Figure 5 also depicts the longitudinally positioned cylindrical member 99, the first flange 102, and the second flange 103. The longitudinally positioned cylindrical member 99, the first flange 102, and the second flange 103 may assist in the engagement of the mixing tube 78 by a motor. The rotation of the mixing tube 78 via an attached 15 motor will be discussed in more detail below. [00721 In another aspect, the invention is directed to a method of uniformly suspending the magnetic particles in a solution in a mixing tube 78 according to the invention described above. According to one embodiment of the method of the invention, before a sample probe aspirates magnetic particle solution from the 20 mixing tube 78 into a sample vial, the magnetic particles are suspended in the mixing tube 78. The magnetic particles are suspended by the first agitating member 86 and the second agitating member 88 rotating or oscillating to create turbulence in the solution. The turbulence agitates the magnetic particles and suspends them in solution. 25 [0073] As shown in Figure 6, in order to rotate or oscillate the mixing tube 78 to create the turbulence, a motor 105 may be used. The motor 105 may combine a stepper motor 107 for rotation and a linear actuator 104 for movement in the Z direction, shown by the dotted lines in Figure 6, relative to the motor. The linear actuator 104 may be capable of, for example, in the range of 10 to 25 mm of travel, 30 such as 10 mm, 15, mm, 20 mm or 25 mm, in the Z-direction. In a particular embodiment, the stepper motor 107 may rotate bi-directionally. -16- [00741 In operation, the linear actuator 104 is first raised to engage the mixing tube 78. Then, the stepper motor 107 rotates the mixing tube according to a mixing protocol, i.e. a series of rotations used to suspend the magnetic particles, and then the rotatable member is lowered to disengage from the mixing tube 78. 5 [00751 With reference to Figure 6, according to one embodiment of the invention, the linear actuator 104 has one or more pins, for example, a first pin 106 and a second pin 108. The second pin 108 may engage the first slot 100 of the mixing tube 78 as indicated by arrows 110. The first pin 106 may engage the cylindrical member 99 located at the lower section 96 of the mixing tube 78. 10 [0076] In another embodiment (not shown), the lower section 96 of the mixing tube 98 may include a plurality of longitudinally placed cylindrical members 99. Additional pins (not shown) may then engage each separate cylindrical member to rotate the mixing tube clockwise and counter-clockwise in an oscillating manner. In yet another embodiment (not shown), a gear may be affixed to the base 89 of the 15 mixing tube 78. The rotatable member may then engage the gear to rotate the mixing tube 78 both clockwise and counter-clockwise. [0077] According to one embodiment of the method of the invention, the mixing tube 78 rotates in one or more directions to agitate the magnetic particles. In a particular embodiment, the mixing tube 78 is first rotated in one direction, for 20 example clockwise, for a first time period and then rotated in the opposite direction, for example counter-clockwise, for a second time period. In another embodiment, the mixing may involve separate phases, such as two phases, three phases, four phases or more. Each phase may be composed of one rotation in one direction of a predetermined number of complete or partial rotations, followed by one rotation a 25 predetermined number of complete or partial rotations in another direction. The series of rotations is repeated several times. Thus, the variables associated with the mixing process include (1) rotation direction, (2) amplitude of rotation or degrees/angle of rotation and (3) number of rotations. The first phase and the second phases rotate the mixing tube 78 through different angles and the mixing 30 tube 78 is rotated a different number of times for each phase. -17- -18 [00781 For example, in an exemplary mixing protocol, the first phase, may include one full rotation in each direction and alternating the direction of rotation fifteen times thereafter. The first phase of mixing may last up to about 6.8 seconds and may involve an oscillation time of about 0.452 seconds. The second phase, may 5 involve four full 5 rotations in each direction and alternating the direction of rotation three fines. The second phase mixing may be up to about 3.0 seconds and the oscillation time may be about 1.01 seconds. The total mixing time of both phases may be about 10.6 seconds, including raising and lowering the rotatable member and mixing in both the first phase and the second phase. Depending on the level of 10 mixing required, the mixing io protocol may repeat two, three or more times to obtain the desired suspension of magnetic particles. Furthermore, the above described sequence may be repeated two times per instrument cycle to accomplish the desired amount of magnetic particle re suspension. The process and method of mixing and suspending the magnetic particles is not limited to the examples disclosed herein, 15 but can be accomplished through any is mixing protocol that would ensure uniform suspension of the magnetic particle solution. 10079] Another aspect of the present teachings relates to a method of manufacturing the mixing tube 78. The mixing tube may be manufactured by molding, for example, extrusion molding or injection molding. Injection molding, as known by 20 one of skill 20 in the art, involves injecting molten material into a mold to form the desired shape. Extrusion molding, as known by one of skill in the art, involves the forcing of molten material through a dye to form the desired shape. In an extrusion molding method of manufacturing, manufacturing the mixing tube 78 in a frustoconical shape is advantageous because it facilitates the removal of the mixing 25 tube 78 from a die in 25 which it was molded. 100801 Variations, modification, and other implementations of what is described herein will occur to those of ordinary skill in the art without departing from the spirit and scope of the invention as claimed. Accordingly, the invention is to be defined not by the 30 preceding illustrative description but instead by the spirit and scope of the following claims. [00811 In the claims which follow and in the preceding description of the invention, except where the context requires otherwise due to express language or necessary 35 implication, the word "comprise" or variations such as "comprises" or "comprising" is used in an inclusive sense, i.e. to specify the presence of the stated features but not to preclude the presence or addition of further features in various embodiments of the 22939951 (GHMatters) 31/05/10 -19 invention. [0082] It is to be understood that, if any prior art publication is referred to herein, such reference does not constitute an admission that the publication forms a part of the 5 common general knowledge in the art, in Australia or any other country. 22939951 (GHMatters) 31105/10

Claims (25)

1. A system for suspending particles, said system comprising: a reagent cartridge comprising a reagent holder for holding a plurality of 5 tubes; said plurality of tubes comprising a mixing tube for holding particles, rotatably mounted in said holder, said mixing tube comprising a top end, and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, said mixing tube further comprising at least one slot longitudinally 10 positioned on said lower section of said mixing tube with one end of said slot positioned and open on the lower section of said tube.

2. The system of claim 1 wherein said reagent holder comprises a body having a first groove and a second groove. 15

3. The system of claim 1 or 2 wherein said mixing tube further comprises an agitating member and said system further comprises a motor operatively connectable to said slot, said motor having a linear actuator for engaging said slot and rotating said mixing tube, wherein rotation of said mixing tube actuates said 20 agitating member thereby suspending said particles.

4. The system of claim 1 or 2 further comprising a first and a second agitating member. 25

5. The system of claim 4 further comprising a third agitating member.

6. The system of claim 3 wherein said linear actuator further comprises one or more pins and said mixing tube further comprises a second slot for engaging with said one or more pins of said linear actuator. 30

7. The system according to any one of claims 1 - 6, wherein said mixing tube is cylindrical.

8. The system according to any one of claims 1 - 6 wherein said mixing tube is 35 frustoconical.

9. The system according to any one of claims 1 - 8 wherein said mixing tube is sealed. 20 3504373_2 (GHMattes) P81539.AU.1

10. The system according to any one of claims 1 - 9, wherein said mixing tube is detachable from said holder. 5

11. The system according to any one of claims I - 10 wherein one or more of said plurality of tubes comprise reagent tubes.

12. The system of claim I1 wherein at least one of said plurality of reagent tubes is detachable from said holder. 10

13. The system of claim I1 wherein at least one of said plurality of reagent tubes is substantially rectangular in cross-section.

14. The system of claim 11 wherein at least one of said plurality of reagent tubes 15 is substantially cylindrical.

15. The system according to any one of claims I - 14 further comprising a piercing cap assembly positioned over the plurality of tubes, the piercing cap assembly comprising a piercing cap including a first notch, a second notch and one 20 or more protrusions extending from the piercing cap, each protrusion comprising a hollow cylinder, wherein said first notch of said piercing cap engages with a first groove of said reagent holder and said second notch of said piercing cap engages with a second groove of said reagent holder when said piercing cap is in a depressed position. 25

16. A system for suspending particles, comprising: a reagent cartridge comprising a reagent holder for holding a plurality of tubes; said plurality of tubes comprising, a mixing tube for holding particles, 30 rotatably mounted in said holder, said mixing tube comprising a top end, and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, and at least one slot longitudinally positioned on said lower section of said mixing tube with one end of said slot positioned and open on the lower section of said tube. 35

17. A method of suspending particles in solution comprising: dispensing a magnetic particle solution into a mixing tube, wherein said 21 3504373_1 (GHMatters) P81539AU 1 mixing tube comprises a cylinder, a top end and a lower section positioned on an end opposite to said top end, said lower section of said mixing tube further comprises at least one slot longitudinally positioned on said lower section of said mixing tube and having one end of said slot positioned and open on the lower 5 section of said tube; engaging said lower section of said mixing tube with a motor; rotating said mixing tube via said motor according to a mixing protocol; and disengaging said motor from said mixing tube. 10

18. The method of claim 17 wherein the mixing protocol comprises: rotating said mixing tube in a first direction for a first period of time; and rotating said mixing tube in a second direction for a second period of time.

19. The method of claim 17 wherein the mixing protocol comprises a first phase 15 and a second phase.

20. The method of claim 19 wherein said first phase comprises rotating said mixing tube one full rotation in both a first direction and a second direction. 20

21. A method of manufacturing a mixing tube comprising: molding a mixing tube for holding particles rotatably mounted in a holder, said mixing tube comprising a top end and a lower section positioned on an end opposite to said top end, an interior surface, an exterior surface, and at least one slot longitudinally positioned on said lower section of said mixing tube wherein one 25 end of said slot is positioned and open on the lower section of said tube.

22. The method of claim 21 wherein said molding comprises extrusion molding.

23. The system for suspending particles according to claim 1 or 16 substantially 30 as herein described with reference to the accompanying drawings.

24. The method of suspending particles according to claim 17 substantially as herein described with reference to the accompanying drawings. 35

25. The method according to claim 21 substantially as herein described with reference to the accompanying drawings. 22 3504373_1 (GHMatters) P81539.AU.1