AU2011211406A1 - Compositions for immunizing against mycobacterium - Google Patents

Abstract

A method for generating a T cell immune response in a host involving administering a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial antigen 85A gene. Vectored vaccines and uses thereof are also provided. Also provided is a method of inducing a CCR7+ memory T cell response against an antigen using an adenovirus vector expressing an antigen or an immunogenic fragment thereof. WO 20061072787 PCT/GB2006/000023 Figure 1 (d) () --A-BCG -U- MVA85A a. -A-BCG 1500- MVA85A co 1000 k) Time (weeks) Figure 1 (e) Median responses to PPD (Figure Ib) (a) B v BM, P = 0.006; M v BM, P = 0.002 (b) B v M, P = 0.021; B v BM, P = 0.001; M v BM, P = 0.047 (c) B v M, P = 0.042; M v BM, P= 0.003 (d) B v BM, P = 0.032; M v BM, P = 0.01 (e) B v BM, P < 0.001; M v BM, P < 0.001 Median responses to purified antigen 85 (Figure Ic) (f) BvBM,P=0.018;MvBM,P=0.002 (g) B v M, P = 0.003; B v BM, P < 0.001; M v BM, P 0.024 (h) B v BM, P < 0.001; M v BM, P= 0.004 (i) B v BM, P = 0.003; M v BM, P= 0.033 (j) B v BM, P < 0.001; M v BM, P < 0.001 Median summed peptide pool responses (Figure Id) (k) B v M, P = 0.007; M v BM, P = 0.03 (1) BvM,P<0.001;BvBM,P<0.001;MvBM,P=0.015 (m)B v M, P = 0.002; B v BM, P < 0.001; M v BM, P= 0.003 (n) B v M, P = 0.003; B v BM, P < 0.001; M v BM, P = 0.003 (o) B v M, P = 0.024; B v BM, P < 0.001; M v BM, P < 0.001

Description

WO 2006/072787 PCT/GB2006/000023 1 COMPOSITIONS FOR IMMUNIZING AGAINST MYCOBACTERIUM The present invention relates to a method for generating a T cell immune response in a host. The method involves the step of administering a vectored vaccine comprising a non replicating or replication impaired viral vector expressing the translation product of a 5 mycobacterial antigen 85A gene (also referred to herein as the "Ag85A" gene). All publications, patents and patent applications cited herein are incorporated in full by reference. Background to the invention Tuberculosis is caused by the respiratory pathogen Mycobacterium tuberculosis and kills 2 10 million people each year, predominantly in the developing world (http://www.who.int/gtb/publications/globrepO/index.html). The only licensed vaccine against M tuberculosis, bacille Calmette-Guerin (BCG) (Calmette, A., C. Guirin. (1924) Ann. Inst. Pasteur. 38:371), is an attenuated strain of Mycobacterium bovis, which in developing countries is typically administered intradermally as a single dose to newborn 15 infants. Review of many studies suggests that BCG vaccination is protective against childhood meningeal tuberculosis and systemic forms of the disease. However, protective efficacy is variable (ranging from 0-80%) (Colditz, G. A. et al. (1994). JAMA 271:698) against adult pulmonary disease, the major global cause of tuberculosis mortality, and wanes with time (Sterne, J. A. et al. (1998) Int. J. Tuberc. Lung Dis. 2:200). The basis of the 20 variability is uncertain. Even so, 80% of infants throughout the world receive BCG each year (http://www.who.int/inf-fs/en/facti 04.html). Mycobacterium tuberculosis is an intracellular pathogen, protective efficacy against which is associated with the maintenance of a strong cell-mediated response to infection involving both CD4+ and CD8+ T cells and the ability to respond with Thl -type cytokines, particularly 25 IFN-y (Flynn, J. L., J. Chan. (2001) Annu. Rev. Immunol. 19:93). BCG vaccination induces IFN-y-secreting T cells, predominately of the CD4+ T cell phenotype, that cross-react with M. tuberculosis proteins (Launois P et al, (1994) Infection and Immunity 62(9):3679-87). Recent studies suggest that BCG delivered parenterally may fail to induce T cell immune responses in the lung mucosa, which may be critical for protection against pulmonary disease. 30 There is therefore a need to develop further vaccines against Mycobacterial disease.

WO 2006/072787 PCT/GB2006/000023 2 Summary of the invention Surprisingly, it has now been found that viral vectors expressing Mycobacterial antigen 85A (Ag85A) can induce a T cell immune response in a human patient when administered as an immunogenic composition. Therefore, the invention provides a method of inducing a T cell 5 immune response against a mycobacterial antigen in a human patient comprising the step of administering an immunogenic composition comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene to the patient. Preferably, the immunogenic composition is a vectored vaccine. This novel vaccine approach significantly improves the magnitude and duration of the T cell immune response. 10 Preferably, the T cell response is a memory T cell response. The 85A antigen (Ag85A) (Accession Nos. CAA17868 and BX842584) is a member of the Ag 85 complex. This is a family of proteins comprising Ags 85A, 85B, and 85C secreted by 'M tuberculosis, BCG, and many other species of mycobacteria (Harth, G. et al., (1996) Infect. Immun. 64:3038-3047). Antigen 85A (Ag85A) is highly conserved amongst all 15 mycobacterial species and is immunodominant in animal and human studies. Ag 85A (Ag85A) is encoded by the fbpA gene. The 85A antigen (Ag85A) from Mycobacterium tuberculosis is listed in SEQ ID NOs 1 and 2 herein). Recent strategies to induce enhanced T cell responses in tuberculosis vaccine research have harnessed recombinant DNA technology, using plasmid, bacterial, or viral vectors and 20 recombinant protein to express M tuberculosis antigens. Vaccination of mice with Ag85A DNA boosted with a MVA vector expressing Ag85A has been shown to afford a degree of protection equivalent to BCG following M. tuberculosis challenge (McShane, H. et al., (2002). Infect. Immun. 70:1623-1626). However, immune responses generated by single or repeated immunization with the recombinant MVA vector alone were weak. 25 For long term protection against mycobacterial disease such as tuberculosis it is considered important to maintain "memory T cells", which can continue to stimulate protective immunity for decades. Memory immune responses are classically attributed to the reactivation of long-lived, antigen specific T lymphocytes that arise directly from differentiated effector T cells and persist in a 30 uniformly quiescent state. Effector and memory T cells are thought to be distributed to all tissues in the body, particularly epithelial surfaces (such as the skin and gut) where pathogens are likely to be re-encountered.

WO 2006/072787 PCT/GB2006/000023 3 Memory T cells have been shown to be heterogeneous and to comprise at least two subsets, endowed with different migratory capacity and effector function (Reinhardt, R.L. et al., (2001) Nature. 410, 101-105). Cells of the first subset resemble the effector cells generated in the primary response in that they lack the lymph node--homing receptors L-selectin and CCR7 5 and express receptors for migration into inflamed tissues. Upon re-encounter with antigen, these "effector memory T cells" (TEM) can rapidly produce IFN-y or IL-4 or release pre stored perforin. Cells of the second subset express L-selectin and CCR7 and lack immediate effector function. These "central memory T cells" (TCM) have a low activation threshold and, upon restimulation in secondary lymphoid organs, proliferate and differentiate to effectors 10 (Iezzi, G. et al., (2001). J. Exp. Med. 193, 987-994). The present inventors have found that a replication impaired viral vector expressing Ag 85A (Ag85A) (in this case, exemplified with "MVA85A") -can induce high levels of antigen specific interferon-y secreting memory T cells - both effector memory and central memory T cells - when used alone in BCG naYve healthy volunteers. 15 New immunological assays for measuring and quantifying T cell responses have been established over the last 10 years. The present inventors utilised the interferon-gamma (IFN-y) ELISPOT assay as the main immunological readout for clinical trials with MVA85A, because the secretion of IFN-y from antigen specific T cells is the best available correlate of protection against Mtuberculosis. Furthermore, the ELISPOT assay is a very reproducible and sensitive 20 method of quantifying the number of IFN--y secreting antigen specific T cells. The present inventors utilised two ELISPOT assays: the ex-vivo (fresh) ELISPOT assay, wherein peripheral blood mononuclear cells (PBMC) are incubated for 18 hours with antigen to determine levels of CCR7- circulating effector T cells, and the cultured ELISPOT assay, wherein PBMC are incubated with antigen for 10-14 days to measure levels of CCR7+ central 25 memory T cells (Godkin et al, JI, 2002). The present inventors have discovered that vaccination with MVA85A induces a strong central memory T cell response specific for antigen 85A (Ag85A) which is still detectable 3 weeks after vaccination, when the circulating effector T cell response is almost undetectable. This is the first demonstration that the long-term central memory T cell population may be 30 significantly enhanced in a patient by the administration of an immunogenic composition expressing a mycobacterial antigen.

WO 2006/072787 PCT/GB2006/000023 4 As used herein, the term "memory T cell" is intended to include both the CCR7- (effector memory T cells) and CCR7+ (central memory T cells) subpopulations of T cells. This definition also includes both class 1-restricted CD4 memory T cells and class I-restricted CD8 memory T cells. Preferably, the meinory T cells induced by the vectored vaccines of the 5 invention are characterised by cell surface expression of CCR7+. These are referred to herein as central memory T cells. Preferably, the memory T cell response induced by the inumnogenic compositions of the invention is a protective T cell response. A protective immune response may be measured by immunoassay of IFN-y secretion, preferably from antigen specific T cells. Preferably, the 10 memory T cell response is long lasting and persists for at least 1, 2, 5, 10, 15, 20, 25 or more years. Most preferably, the protective immune response is lifelong. Preferably, the Ag85A gene is expiessed in a viral vector. Preferably, the Ag85A gene is expressed in a non-replicating or replication-impaired viral vector. the term "vectored vaccines" is well inown in the art. The vector used in the method 15 according to the invention is a non-replicating or replication impaired vira vector. The-term "non-replicating" or "replication-impaired" as used herein means not capable of replication to any significant extent in the majority of normal human cells. Viruses which are non replicating or replication-impaired may have become so naturally (i.e. they may be isolated as such from nature) or artificially e.g. by breeding in vitro or by genetic manipulation, for 20 example deletion of a gene which is critical for replication. There will generally be one or a few cell types in which the viruses can be grown, such as CEF cells for modified virus Ankara (MVA). In general, the viral vector should be capable of stimulating a T cell response. Examples of viral vectors that are useful in this context are vaccinia virus vectors such as MVA or NYVAC. A preferred viral vector is the vaccinia strain MVA or a strain derived 25 from MVA. Alternatives to vaccinia vectors include other poxvirus vectors including avipox vectors such as fowlpox or canarypox vectors. Particularly suitable as'an avipox vector is a strain of canarypox known as ALVAC (commercially available as Kanapox), and strains derived from ALVAC, and also a fovlpox strain known as FP9. Further alternatives are alphavirus vectors, adenoviral vectors, herpes viral vectors, flavivirus vectors, retroviral 30 vectors and influenza virus vectors. For example, the vector may be a non-human adenovirus vector. It has surprisingly been found that the use of an adenovirus vector induces a very strong CD8 memory T cell response WO 2006/072787 PCT/GB2006/000023 5 in addition to a very strong CD4 memory T cell response. The induction of both a CD8 and a CD4 memory T cell response by the same vaccine is likely to be of benefit in both the prophylaxis and treatment of mycobacterial disease. A method of inducing a CD8 and a CD4 memory T cell response against an antigen using an adenovirus vector expressing the antigen 5 or an immunogenic fragment thereof is therefore also included within the scope of this application. The antigen expressed by the adenovirus vector is preferably a mycobacterial antigen as described above, most preferably Ag85A, but may alternatively be any other suitable antigen. Also encompassed within the scope of the invention is the use of an adenovirus vector 10 expressing an antigen or immunogenic fragment thereof in the manufacture of a medicament for inducing a CD8 and a CD4 memory T cell response against the antigen. Preferably, the invention provides the use of an adenovirus vector expressing a mycobacterial antigen or immunogenic fragment thereof in the manufacture of a medicament for the treatment or prophylaxis of a mycobacterial disease. The antigen is preferably a mycobacterial antigen as 15 described above, most preferably Ag85A, but may alternatively be any other suitable antigen. It is preferred that the viral vector is incapable of causing a serious infection in the human patient. Replication of a virus is generally measured in two ways: 1) DNA synthesis and 2) viral titre. More precisely, the term "non-replicating or replication-impaired" as used herein and as it 20 applies to poxviruses means viruses which satisfy either or both of the following criteria: 1) exhibit a 1 log (10 fold) reduction in DNA synthesis compared to the Copenhagen strain of vaccinia virus in MRC-5 cells (a human cell line); 2) exhibit a 2 log reduction in viral titre in HELA cells (a human cell line) compared to the Copenhagen strain of vaccinia virus. 25 Examples of poxviruses which fall within this definition are MVA, NYVAC and avipox viruses, while a virus which falls outside the definition is the attenuated vaccinia strain M7. The invention also provides for the use of an immunogenic composition comprising a non replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene in the manufacture of a medicament for the treatment or 30 prevention of mycobacterial disease in a human patient. Preferably the immunogenic WO 2006/072787 PCTI//GB2006/UUUt2 6 composition is a vectored vaccine. The immunogenic composition and vectored vaccine act by inducing a T cell immune response in the patient. Vaccines according to the invention may either be prophylactic (i.e. to prevent infection), post-exposure (i.e. to treat after infection but before disease) or therapeutic (i.e. to treat 5 disease), but will typically be prophylactic or post-exposure. Mycobacterial diseases which can be treated or prevented by the vectored vaccine of the present invention include; tuberculosis, leprosy, Mycobacterium avium infection, non tuberculosis mycobacterial infection, Buruli ulcer, Mycobacterium bovis infection or disease, Mycobacterium paratuberculosis infection or related disease. Other diseases (i.e., not 10 mycobacterial diseases) include inflammatory bowel disease, Crohns disease, autoimmune disease, cancer, bladder cancer, smallpox and monkeypox. Specialised viral vector constructs may be used to facilitate the preparation and utility of the vectored vaccine. All the vector constructs described herein form aspects of the invention. Vectored vaccines comprising these viral constructs are also encompassed as aspects of the 15 invention. For example, one or more antigen genes may be truncated at the C-terminus or the N-terminus of the gene. This may have the effect of facilitating cloning and construction of the vectored vaccine, and alternatively or additionally, may lead to increased efficacy. Methods for truncation will be known to those of skill in the art. The simplest way to effect truncations of 20 this type is to use the various well-known techniques of genetic engineering to delete selectively the encoding nucleic acid sequence at either end of the antigen gene, and then insert the desired coding sequence into the viral vector. For example, truncations of the candidate protein are created using 3' and/or 5' exonuclease strategies selectively to erode the 3' and/or 5' ends of the encoding nucleic acid, respectively. Preferably, the wild type gene 25 sequence is truncated such that the expressed antigen is truncated by 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more amino acids relative to the parent antigen. Most preferably, antigen gene is Ag85A which is truncated by 15 amino acids at the C terminus relative to the wild type Ag85A antigen (SEQ ID NO:3, the expression product of SEQ ID NO:4). 30 The antigens suitable for use in the invention also include fragments of the parent antigen, provided that those fragments have an antigenic determinant or epitope in common with or are immunologically identifiable with the parent antigen. Polynucleotides encoding these WO 2006/072787 PCT/GB2006/000023 7 fragments are also suitable for use in the immunogenic compositions and vectored vaccines of the invention. As used herein, the term "fragment" refers to a polypeptide having an amino acid sequence that is the same as part, but not all, of the amino acid sequence of the parent antigen from 5 which it is derived or one of their functional equivalents. The fragments should comprise at least n consecutive amino acids from the sequence and, depending on the particular sequence, n preferably is 7 or more (for example, 8, 10, 12, 14, 16, 18, 20 or more). Small fragments may form an antigenic determinant. The antigen genes of the invention may also encode the variants or the functional equivalents 10 of the parent antigen. Such a nucleic acid molecule may be a naturally-occurring variant such as a naturally-occurring allelic variant, or the molecule may be a variant that is not known to occur naturally. Such non-naturally occurring variants of the nucleic acid molecule may be made by mutagenesis techniques, including those applied to nucleic acid molecules, cells or organisms. 15 Among variants in this regard are variants that differ from the aforementioned antigen gene sequences by nucleotide substitutions, deletions or insertions. The substitutions, deletions or insertions may involve one or more nucleotides. The variants may be altered in coding or non coding regions or both. Alterations in the coding regions may produce conservative or non conservative amino acid substitutions, deletions or insertions. 20 Alternatively or in addition to the use of a gene truncation, the gene encoding the antigen may comprise a nucleic acid encoding a tag polypeptide such that this is covalently linked to the antigen upon translation. Preferably the tag polypeptide is selected from the group consisting of a PK tag, a FLAG tag, a MYC tag, a polyhistidine tag or any tag that can be detected by a monoclonal antibody. Other examples will be clear to the person of skill in the art. If used, the 25 PK tag preferably has the sequence Pro-Asn-Pro-Leu-Gly-Leu-Asp. A tag of this type may facilitate detection of antigen expression, and clones expressing the antigen, and alternatively or additionally, may lead to increases in efficacy. The nucleic acid encoding the tag polypeptide may be positioned such that, following translation, the tag is located at the C-terminus or the N-terminus of the expressed antigen or 30 may be internal to the expressed antigen. Preferably, the tag is located at the C-terminus of the expressed antigen. Nucleotides encoding a linker sequence may be inserted between the nucleic acid encoding the tag polypeptide and the nucleic acid encoding the expressed WO 2006/072787 PCT/GB2006/000023 8 antigen. Preferably, the linker sequence, when expressed, comprises the amino acids Gly-Ser Ile. More preferably, the amino acids Gly-Ser-Ile are inserted between the N-terminal antigen sequence and the tag of the expressed antigen. Most preferably, the expressed antigen is Ag85a (Ag85A) and a PK tag is located at the C-terminus of the Ag85a (Ag85A) gene. 5 A gene encoding an antigen can also include a leader sequence. The leader sequence may affect processing of the primary transcript to mRNA, mRNA stability or translation efficiency. Preferably, the leader sequence enhances expression and/or immunogenicity of the antigen. Enhanced immunogenicity can be determined through e.g. cultured and ex vivo ELISPOT assays. An enhanced level of expression can be determined by e.g. using a 10 monoclonal antibody to detect the amount of protein produced. Preferably, expression and/or immunogenicity are enhanced by 2-fold, 3-fold or more when compared to antigen expressed without the leader sequence. An example of a suitable leader sequence is t-PA (tissue plasminogen activator) (Main A.S. et al. (2000) Microbes Infect. 2000 Nov;2(14):1677-85). Preferably, the viral vector construction comprises a C-terminally truncated sequence of 15 Ag85A fused to a TPA leader sequence. In a still further preferred embodiment, the viral vector of the invention expresses a C-terminally truncated sequence of Ag85A fused to a TPA leader sequence and to a PK tag sequence. Preferably, the leader sequence is fused to the N terminus of the antigen and the tag sequence is fused either internally or to the C-terminus of the protein. In an especially preferred embodiment, the viral vector construction comprises a 20 polynucleotide encoding Ag85a (Ag85A) C-terminally truncated by 15 amino acids fused to a TPA sequence and with a C-terminal PK tag of sequence Pro-Asn-Pro-Leu-Leu-Gly-Leu-Asp wherein the amino acid residues Gly-Ser-Ile are present between the Ag85A sequence and the PK tag (SEQ ID NO:5). Preferably, the expression product of the viral vector has the amino acid sequence of SEQ ID NO:6. 25 The protective T cell effect noted by the inventors has been found to be particularly potent in human patients who have been previously exposed to a mycobacterial antigen. Heterologous prime-boost immunisation strategies induce higher levels of effector T cell responses in animals and humans than homologous boosting with the same vaccine (Schneider, J. et al. (1998) Nat. Med. 4, 397-402, McShane, H. et al (2001) Infect. Immun. 69, 681-686). 30 The mechanism underlying the gradual loss of effectiveness of BCG as the (neonatally inoculated) individual reaches 10 to 15 years of age is poorly understood. One possible assumption is that immunity generated by BCG has disappeared and the individual becomes WO 2006/072787 PCT/GB2006/000023 9 equivalent to a naive host who can be vaccinated with a new candidate vaccine designed to induce primary immunity. Although repeated vaccination with BCG does not appear to further enhance protection against TB (ref Rodrigues L et al, Lancet 2005), incorporating BCG into a heterologous prime-boost regime would retain the protective effects of BCG. The 5 immunogenicity and protective efficacy of boosting BCG with viral vectors expressing antigen 85A (Ag85A) in several animal models has previously been documented (Goonetilleke, N.P. et al. (2003) J. Immunol. 171, 1602-1609; Williams A et al, Infection and Immunity (73(6):3814-6), but the induction of a protective memory T cell response was not documented. 10 Therefore, the invention also provides a method for raising a T cell immune response in a human patient, comprising the step of administering at least one mycobacterial antigen to a patient in combination with a vectored vaccine comprising a non-replicating or replication. impaired viral vector expressing the translation product of a mycobacterial 85a (Ag85A) gene. Preferably, the T cell immune response is a memory T cell immune response. 15 The invention also provides the use of: (a) at least one mycobacterial antigen; and (b) a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial 85a (Ag85A) gene, in the manufacture of a medicament for administration to a patient to induce a T cell immune response. The vectored vaccine comprising a non-replicating or replication impaired viral vector 20 expressing the translation product of a mycobacterial 85a (Ag85A) gene and the mycobacterial antigen(s) may be administered simultaneously, sequentially or separately. For example, the mycobacterial antigen(s) may be administered to prime the patient before or after administration of the vectored vaccine to boost the patient's immune response to the vectored vaccine. 25 Furthermore, the invention also provides a method of inducing a T cell immune response in a human patient comprising the step of administering an immunogenic composition comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene to the human patient, wherein the patient has been pre-exposed to at least one mycobacterial antigen. Preferably, the T cell immune response is a memory T cell 30 immune response. The invention also provides for the use of an immunogenic composition comprising a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing WO 2006/072787 rc 1IUD4UU/UUUJ 10 the translation product of a mycobacterial 85a (Ag85A) gene, in the manufacture of a medicament for the treatment or prevention of mycobacterial disease in a human patient which has been pre-exposed to a mycobacterial antigen. The mycobacterial antigen may be from M tuberculosis and/or may be from one or more 5 other mycobacteria such as M avium-intracellulare, M kansasii, M marinum and/or M ulcerans. Where the patient has been pre-exposed to only one antigen, the antigen may be an antigen that confers a protective immune response against mycobacterial infection. In one embodiment of the invention, the antigen to which the patient has been pre-exposed is not Ag85A. 10 Alternatively or additionally, the patient may have been pre-exposed to one or more mycobacteria themselves. For example, pre-exposure of a patient to at least one mycobacterial antigen may comprise prior exposure to M tuberculosis. Alternatively or additionally, pre-exposure of a patient to at least one mycobacterial antigen may comprise prior exposure to environmental mycobacteria such as M avium-intracellulare, M kansasii, 15 M marinum and/or M ulcerans. Preferably, the patient is latently infected with the mycobacteria. For example, the patient may have been pre-exposed to M tuberculosis and be latently infected with tuberculosis. Where the medicament is for the treatment of a patient who is latently infected with the mycobacteria, the treatment preferably eradicates the mycobacterial infection. 20 Alternatively or additionally, pre-exposure may comprise neonatal or pre-vaccination with BCG. The present inventors have found that in volunteers who had been vaccinated previously with BCG and who then received a boosting dose of the vectored vaccine of the present invention, substantially higher levels of antigen specific interferon-y secreting T cells were induced, and at 24 weeks after vaccination these levels were 5-30 times greater than in 25 vaccinees administered a single BCG vaccination. Accordingly, this aspect of the invention provides a method of inducing a T cell immune response in a human patient, comprising the steps of exposing the patient to at least one mycobacterial antigen, and boosting the immune response by administering a boosting composition comprising an immunogenic composition comprising a non-replicating or 30 replication impaired viral vector expressing the translation product of a mycobacterial 85a (Ag85A) gene.

WO 2006/072787 rM IlxDZUUOIUUUUL3 11 This aspect of the invention also relates to a method for generating a T cell immune response in a human patient, comprising the steps of; i) exposing the patient to at least one mycobacterial antigen; ii) administering to said patient at least one dose of a boosting composition comprising a 5 vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial 85a (Ag85A) gene. In one embodiment of the invention, where the patient is exposed to only one mycobacterial antigen in step i), the antigen is an antigen that confers a protective immune response, but is not Ag85A. 10 Step i) may be performed on the patient at any age, for example, neonatally, during infancy, during adolescence or during adulthood. Preferably, the patient is neonatally exposed to the at least one mycobacterial antigen. Administration of the immunogenic composition may occur at least 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 or more weeks or 0.25, 0.5, 0.75, 1, 5, 10, 15, 20, 25, 30, 35 or 40 or more years after pre 15 exposure to at least one mycobacterial antigen. Preferably, where step i) is performed when the patient is in infancy, step ii) is performed during infancy or adolescence. Where step ii) comprises administering more than one dose of a boosting composition to the patient, the more than one doses may be administered over a short time period of over a long time period. For example, the doses of boosting composition may be administered over a 20 period of hours, days, weeks, months or years. For example, the second boosting dose may be administered between 0.5 and 24 hours after the first boosting dose, between 1 day and 7 days after the first boosting dose, between 1 week and 1 month after the first boosting dose, between 1 month and 6 months after the first boosting dose, between 6 months and 1 year after the first boosting dose, or between 1 to 2, 2 to 5, 6 to 10, or more than 10 years after the 25 first boosting dose. These time intervals preferably also apply mutatis mutandis to the period between any subsequent doses. In a second aspect of the invention, in addition to the immune response induced against the 85a (Ag85A) antigen, the viral vector stimulates a vector specific T-cell response. According to this aspect of the invention, administration of the vectored vaccine of the invention 30 promotes a T cell immune response against the virus from which the viral vector is derived. For example, use of an MVA vector in the vectored vaccine of the invention promotes a T cell WO 2006/072787 ri.iID 'U/U"" 12 immune response against vaccinia virus. Preferably, this T cell response is a protective T cell response. An effect of this type has not been reported previously and is clearly advantageous in that the vectored vaccine has a dual role; firstly in protecting against mycobacterial diseases, and second in protecting against a disease mediated by viruses related to the vector. 5 In the case of the MVA vector, such a disease is smallpox. Virally derived diseases which can be treated or prevented by the vectored vaccine of the present invention will be clear to those of skill in the art; examples include smallpox, monkeypox and disseminated vaccinia infection. Accordingly, this aspect of the invention provides a method of inducing a T cell immune 10 response against a mycobacterial antigen and a virus in a human patient comprising the step of administering an immunogenic composition comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene to the human patient. Preferably, the T cell immune response is a memory T cell response. This aspect of the invention also provides the use of an immunogenic composition comprising 15 a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene in the manufacture of a medicament for the induction of a T cell immune response against a mycobacterial antigen and a virus in a human patient. The vaccines of the invention deliver an immunologically effective amount of at least one antigen to a patient. By 'immunologically effective amount', it is meant that the 20 administration of that amount to an individual, either in a single dose or as part of a series, is effective for treatment or prevention. This amount varies depending upon the health and physical condition of the individual to be treated, age, the capacity of the individual's immune system, the degree of protection desired, the formulation of the vaccine, the treating doctor's assessment of the medical situation, and other relevant factors. It is expected that the amount 25 will fall in a relatively broad range that can be determined through routine trials. In a third aspect of the invention, the viral vector may further express the translation product of one or more additional antigen genes which can be used to induce an antigen specific immune response against such additional antigens. The immune response may be a CD8+, CD4+ and/or antibody response. Preferably, the one or more additional antigen genes is/are 30 derived from M tuberculosis, Plasmodium sp, influenza virus, HIV, Hepatitis C virus, Cytomegalovirus, Human papilloma virus, malaria, leishmania parasites or, preferably, any mycobacteria spp. Preferably, the one or more additional antigen genes encode an antigen WO 2006/072787 IcT /IUUwuuJ 13 selected from the group consisting of; an antigen of the antigen 85 family from any Mycobacterium or any antigen expressed by mycobacteria spp.; more preferably one or more latency antigens such as the l6kDa antigen or heparin-binding heamagglutinin (HBHA) or ESAT6 or the fusion protein known as 72F. 5 It is also envisaged that the additional antigen may be endogenously derived such that the immune response induced is directed against a tumour. Endogenously derived antigens which are suitable for use with the present invention are; human heat shock proteins and tumour associated antigens such as CEA, PSA, Muc-1, Her2neu. The viral vector may be designed to express the Ag85A gene and the one or more additional 10 antigen genes as an epitope string. Advantageously, the epitopes in a string of multiple epitopes are linked together without intervening sequences so that unnecessary nucleic acid and/or amino acid material is avoided. The creation of the epitope string may preferably be achieved using a recombinant DNA construct that encodes the amino acid sequence of the epitope string, with the DNA encoding the Ag85A in the same reading frame as the DNA 15 encoding the additional antigen(s). Alternatively, the Ag85A and the additional antigen(s) may be expressed as separate polypeptides. This aspect of the invention also provides the use of a vectored vaccine comprising a non replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene and the translation product of at least one additional antigen or 20 epitope gene in the manufacture of a medicament for the treatment of prevention of both mycobacterial disease and at least one additional disease in a human patient by inducing a T cell response in the patient According to this aspect of the invention, the vectored vaccine may be used to protect against both mycobacterial disease, and against one or more diseases selected from the group 25 consisting of HIV, malaria, and smallpox through the induction of a T cell immune response in a human patient, preferably a memory T cell immune response. Although the vectored vaccine of the present invention may be used in isolation, it may also be combined with other vaccination or therapeutic regimens for treating or preventing an additional disease. Therefore, as well as providing the vectored vaccines as described above, 30 the invention provides a composition comprising a vectored vaccine of the invention and one or more further antigens or epitopes derived from a disease-causing agent.

WO 2006/072787 PCT/GB2006/000023 14 Antigens -and epitopes suitable for use in the compositions of the invention may be of bacterial or viral origin. Suitable antigens may be further classified as protein antigens, carbohydrate antigens or glycoconjugate antigens. The compositions of the invention may include one or more further antigens or epitopes. Examples are: 5 - a different mycobacterial antigen or eptiope. - an IUV antigen or epitope. - a Plasmodium antigen or epitope. - a malaria antigen or epitope. - a saccharide antigen from Streptococcus pneumoniae. 10 - a protein antigen from S.pneumoniae (e.g. from PhtA, PhtD, PhtB, PhtE, SpsA, LytB, LytC, LytA, Sp125, SplOl, Sp128, Spl30 and Spl33). - an antigen or epitope from hepatitis A virus, such as inactivated virus. - an antigen or epitope from hepatitis B virus, such as the surface and/or core antigens. - an antigen or epitope from hepatitis C virus. 15 - a saccharide antigen from Haemophilus influenzae type b. - polio antigen(s) or epitopes such as in IPV. - diphtheria vaccine or its constituent epitopes or antigens or toxoid. - tetanus vaccine or its constituent epitopes or antigens or toxoid. - measles, mumps and/or rubella antigens or epitopes. 20 - influenza antigen(s) or epitopes such as the haemagglutinin and/or neuraminidase surface proteins. The flu antigen may be selected from a pandemic strain, e.g., from avian flu, e.g., strain H5N1. - an antigen or epitope from Staphylococcus aureus. - a cancer antigen or epitope. 25 Where a saccharide antigen is used, it is preferably conjugated to a carrier in order to enhance immunogenicity. Toxic protein antigens may be detoxified where necessary e.g. by chemical and/or genetic means.

WO 2006/072787 PCT/GB2006/000023 15 Saccharide antigens are preferably in the form of conjugates. Preferred carrier proteins for conjugates are bacterial toxins or toxoids, such as diphtheria toxoid or tetanus toxoid. The CRM197 mutant of diphtheria toxin is a particularly preferred carrier, as is a diphtheria toxoid. Other suitable carrier proteins include the Nmeningitidis outer membrane protein, 5 synthetic peptides, heat shock proteins, pertussis proteins, cytokines, lymphokines, hormones, growth factors, artificial proteins comprising multiple human CD4+ T cell epitopes from various pathogen-derived antigens such as the N19 protein, protein D from H influenzae, pneumococcal surface protein PspA, pneumolysin, iron-uptake proteins, toxin A or B from C.dfficile, etc. 10 Further antigens in the composition will typically be present at a concentration of at least 1 pg/ml each. In general, the concentration of any given antigen will be sufficient to elicit an immune response against that antigen. As an alternative to using further protein antigens in the mixture, nucleic acid encoding the antigen may be used. Protein components of the mixture may thus be replaced by nucleic acid 15 (preferably DNA e.g. in the form of a plasmid) that encodes the protein. Similarly, compositions of the invention may comprise proteins which mimic saccharide antigens e.g. mimotopes or anti-idiotype antibodies. Furthermore, the invention also provides a composition comprising a vectored vaccine of the invention and one or more antimicrobial compounds. Examples of antimicrobials suitable for 20 use in the compositions of the invention are antituberculous chemotherapeutics such as rifampicin, isoniazid, ethambutol, pyrizinamide, etc. Accordingly, the invention provides a method of raising a T cell immune response against at least one antigen in a human patient comprising the step of administering a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation 25 product of a mycobacterial Ag 85A (Ag85A) gene, in combination with at least one further antigen and/or antimicrobial, to the patient. The invention also provides the use of: (a) a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A (Ag85A) gene; and (b) at least one further antigen and/or microbial, in the manufacture of a 30 medicament for administration to a human patient to induce a T cell immune response. The vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag 85A (Ag85A) gene and the further WO 2006/072787 rcT/uuuuuuea 16 antigen(s) and/or antimicrobial(s) may be administered simultaneously, sequentially or separately. For example, the vectored vaccine may be administered to prime the patient before administration of the antigen(s)/antimicrobial(s) or after the administration of the antigen(s) to boost the patient's immune response to that antigen. The vectored vaccine and 5 antigen(s)/antimicrobial(s) are preferably administered in admixture. The invention also provides the use of at least one antigen and/or antimicrobial in the manufacture of a medicament for inducing a T cell immune response in a patient, wherein the medicament is administered with a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85a 10 (Ag85A) gene. Similarly, the invention provides the use of a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag 85A (Ag85A) gene in the manufacture of a medicament for inducing a T cell immune response in a patient, wherein the medicament is administered with at least one further antigen and/or antimicrobial. 15 The invention also provides the use of at least one antigen and/or antimicrobial in the manufacture of a medicament for inducing a T cell immune response in a patient, where the patient has been pre-treated with a vectored vaccine comprising a non-replicating or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene. The invention also provides the use of a vectored vaccine comprising a non-replicating 20 or replication impaired viral vector expressing the translation product of a mycobacterial Ag85A gene in the manufacture of a medicament for inducing a T cell immune response in a patient, where the patient has been pre-treated with at least one antigen and/or antimicrobial. The present invention may be used to induce or enhance a variety of immune responses, as described above. In particular, it is an aim of this invention to identify an effective means of 25 immunizing against diseases in which mycobacteria are implicated. Such diseases include Hansen's Disease, tuberculosis, osteomyelitis, Crohn's Disease, leprosy, lymphadenitis, Johne's disease. The above-described aspects of the invention are applicable to a variety of different patients, including for example, children, patients who have HIV, AIDS, are 30 immunocompromised/immunosupressed, or who have undergone organ transplants, bone marrow transplants or who suffer from genetic immunodeficiencies. Where the vaccine is for prophylactic use, the patient may be a child (e.g. an infant or child between 1-5 years), an WO 2006/072787 M' I/ULUUDoUUUUL3 17 older child or a teenager; where the vaccine is for therapeutic use, the patient is preferably an adult. A vaccine intended for children may also be administered to adults e.g. to assess safety, dosage, immunogenicity, etc. The invention also provides a pharmaceutical composition comprising (1) an immunogenic 5 composition of the invention and (2) a pharmaceutically acceptable carrier. The invention provides a method of preparing a pharmaceutical, comprising the steps of: (i) preparing a vectored vaccine of the invention; and (ii) admixing the immunogenic composition with one or more pharmaceutically-acceptable carriers. Carrier (2) can be any substance that does not itself induce the production of antibodies 10 hamful to the patient receiving the composition, and which can be administered without undue toxicity. Suitable carriers can be large, slowly metabolised macromolecules such as proteins, polysaccharides, polylactic acids, polyglycolic acids, polymeric amino acids, amino acid copolymers, and inactive virus particles. Such carriers are well known to those of ordinary skill in the art. Pharmaceutically acceptable carriers can include liquids such as 15 water, saline, glycerol and ethanol. Auxiliary substances, such as wetting or emulsifying agents, pH buffering substances, and the like, can also be present in such vehicles. Stabilizing agents such as trehalose or substances that allow water-soluble sugar glass formation at ambient temperatures may also be present. The latter includes the use of mixed soluble glass stabilisation technology in microsphere format suspended in perfluorocarbon liquids. 20 Liposomes are also suitable carriers. A thorough discussion of pharmaceutical carriers is available in Gennaro (2000) Remington: The Science and Practice of Pharmacy. 20th ed., ISBN: 0683306472. Pharmaceutical compositions of the invention may also be used prophylactically e.g. in a situation where contact with microbes is expected and where establishment of infection is to 25 be prevented. For instance, the composition may be administered prior to surgery. The pharmaceutical composition is preferably sterile. It is preferably pyrogen-free. It is preferably buffered e.g. at between pH 6 and pH 8, generally around pH 7. Preferably, the composition is substantially isotonic with humans. The compositions of the invention may be administered via a variety of different routes. 30 Certain routes may be favoured for certain compositions, as resulting in the generation of a more effective response, or as being less likely to induce side effects, or as being easier for administration.

WO 2006/072787 18 For example, the compositions utilised in this invention may be administered by any number of routes including, but not limited to, oral, intravenous, intramuscular, intra-arterial, intramedullary, intrathecal, intraventricular, transdermal or transcutaneous applications, subcutaneous, intraperitoneal, intranasal, enteral, topical, sublingual, intravaginal or rectal 5 means. The compositions may be prepared for intranasal administration, as nasal spray, nasal drops, gel or powder, as injectables, either as liquid solutions or suspensions; solid forms suitable for solution in, or suspension in, liquid vehicles prior to injection may also be prepared. Direct delivery of the compositions will generally be accomplished by injection, 10 subcutaneously, intraperitoneally, intravenously or intramuscularly, intranasally, or delivered to the interstitial space of a tissue. Dosage treatment may be a single dose schedule or a multiple dose schedule. Various aspects and embodiments of the present invention will now be described in more detail by way of example, with reference to the following figures: 15 Brief Description of the Figures Figure 1: Median IFN-y ELISPOT responses after vaccination in each vaccination group: BCG alone; MVA85A alone; BCG prime-MVA85A boost. (a) timeline for vaccinations (weeks) in each group; (b) Tuberculin purified protein derivative (PPD) responses; (c) Purified antigen 85 (Ag85A) protein responses (d) summed pooled peptide responses; (e) For 20 each of the three antigens measured, the responses between each vaccine group at each time point were compared using Mann-Whitney statistic. Statistically significant comparisons are indicated; (f) T cell epitope display after MVA boost in BCG vaccinated individuals. All individual peptide responses were completely abrogated by CD4+ T cell depletion; Figure 2: Screening blood cultured ELISPOT responses to M.tb PPD; M.avium PPD and 25 recombinant antigen 85A (Ag85A); from 4 volunteers in the MVA85A alone study, prior to vaccination; Each volunteer is identified by a code TXXXXXX, where the first three Xs correspond to the trial number and the last three Xs correspond to the volunteer number, e.g., T002022 means that T002 is trial number and 022 is volunteer number; Figure 3: Cultured (labelled "culture") and ex vivo ELISPOT responses to pools of Ag85A 30 peptides (labelled with upper case letters) in five volunteers (each identified by a code T)XXX, where XXXX is a four digit number, digit one corresponding to trial number and digits two, three and four corresponding to volunteer number, e.g., T2003 means that T2 is WO 2006/072787 rY IruUUDUUUUza 19 trial number and 003 is volunteer number (T2 is the same as T002 in Figure 2 above)) three weeks after administration of a single MVA85A immunisation. Post-vaccination responses are very high and are higher than pre-vaccination responses. Volunteers were not previously vaccinated with BCG; 5 Figure 4: Follow up of T cell responses to MVA-Lac-z used as the antigen in an ex vivo ELISPOT assay in MVA-85A immunized healthy volunteers immunised once at week 1. Volunteers had been previously vaccinated with BCG; Figure 5(a) Median Elispot responses to PPD, recombinant antigen 85A (Ag85A) and summed Antigen 85A (Ag85A) peptide pools after a single vaccination with MVA85A in 10 subjects latently infected with M tb; Figure 5(b) Comparison of MVA85A induced summed Antigen 85A (Ag85A) pooled peptide responses in BCG primed subjects (T005, i.e., trial 5; see example 1) and Mtb latently infected subjects (T007, i.e., trial 7); Figure 5(c) Comparison of MVA85A induced recombinant Antigen 85A (Ag85A) responses 15 in BCG primed subjects (TO05) and Mtb latently infected subjects (T007); Figure 6a: Persistence of the MVA85A induced immune responses for at least 1 year after vaccination in a subject group with a long (more than 10 years) interval between prime (BCG) and boost (MVA85A); Figure 6(b): Persistence of the MVA85A induced immune responses for at least 1 year after 20 vaccination in a subject group with a short (1 month) interval between prime (BCG) and boost (MVA85A); Figure 7(a) Lack of correlation between interval between BCG and MVA85A vaccination and I week post MVA85A T cell responses to antigen 85A (Ag85A) summed peptide pools; Figure 7(b) Lack of correlation between interval between BCG and MVA85A vaccination and 25 24 weeks post MVA85A T cell responses to antigen 85A (Ag85A) summed peptide pools; Figure 8a shows mean levels of IFN-y post vaccination; Figure 8b shows mean levels of IFN y post challenge; Figure 9(a) shows ex-vivo IFN-y Elispot responses to MVA85A in BCG naive UK volunteers; and WO 2006/072787 PCT/GB2006/000023 20 Figure 9(b) shows ex-vivo IFN-y Elispot responses to MVA85A in BCG naive Gambian volunteers. Examples 5 Example 1 The MVA85A vaccine The construction of MVA85A has previously been described (McShane, H. et al. (2002) Infect. Immun. 70, 1623-1626). Clinical grade MVA85A was produced to good manufacturing practice standard by Impfstoffwerke Dessau-Tornau. A Doctors and Dentists 10 Exemption Certificate was issued from the Medicines and Healthcare products Regulatory Agency, London, for the use of MVA85A in clinical trials. Clinical trials Volunteers were recruited for immunisation studies under protocols approved by the Oxfordshire Research Ethics Committee and enrolled only after obtaining written informed 15 consent. The age range for inclusion was 18-55 and all volunteers tested seronegative for HIV, HBV and HCV at screening. Routine laboratory haematology and biochemistry were performed prior to vaccination and all values were within normal limits. All volunteers were followed-up for 6 months, with blood samples taken at regular time points. Those who received MVA85A immunizations completed a diary card recording local and systemic side 20 effects and body temperature for 7 days following vaccination. Vaccinations The first two studies were conducted in BCG naYve healthy volunteers as determined using the Heaf test. The Heaf test involves placing tuberculin purified protein derivative (PPD) on the skin and then using a gun to produce multiple punctures. A positive reaction is more than 25 4 papules at the puncture sites at 72 hours. A positive skin test is indicative of active tuberculosis infection or previous BCG vaccination. Volunteers with a negative (Grade 0) Heaf test (equivalent to a tuberculin skin test of 0 mm) were vaccinated with either BCG (a single immunisation with BCG Glaxo strain, 100 d administered intra-dermally, n = 11) or MVA85A (5 x 10 7 pfu administered intradermally, 2 immunisations given 3 weeks apart, n = 30 14). In the third study, volunteers who had previously been vaccinated with BCG were recruited (n = 17). The median time between BCG vaccination and immunisation with WO 2006/072787 PCT/GB2006/000023 21 MVA85A was 18 years (range 0.5-38 years). Volunteers with a Heaf test not greater than grade II (equivalent to a tuberculin skin test of <15 mm) in strength were enrolled in the study and immunized with a single dose of 5 x 107 pfu MVA85A intradermally into the skin overlying the deltoid on the contralateral arm to BCG vaccination. In total, 31 healthy 5 volunteers were vaccinated with MVA85A. 11 of the 14 BCG naYve volunteers received 2 immunisations, given 3 weeks apart. The remaining 3 received a single immunisation. All of the 17 BCG-primed volunteers received a single MVA85A immunisation. All volunteers completed the 6-month follow-up period and there were no serious or severe adverse events in any of these studies. 10 Immunogenicity measures The main immunological measure used to determine vaccine immunogenicity was the ex vivo IFN-y ELISPOT assay. This was performed on blood taken at the following time points: at screening prior to the tuberculin skin test, and then at 1, 4, 12 and 24 weeks after vaccination. These measurements were carried out on fresh PBMCs using tuberculin PPD (20 pg/ml, SSI), 15 purified antigen 85 (Ag85A) complex (10 pg/ml), and 7 pools of 9-10 15-mer peptides, overlapping by 10 amino-acids (10 jig/ml final concentration of each peptide in ELISPOT well.) Briefly, 300,000 PBMCs per well in 100 P1 R10 (RPMI plus 10% foetal calf serum) were plated directly onto the ELISPOT plate (MAIP S4510, Millipore) in the presence of antigen, and incubated for 18 hours. Streptokinase (250 U/ml)/Streptodornase (12.5 U/ml) and 20 phytohaemagglutinin (10 sig/ml) were used in all assays as positive controls. Assays were performed in duplicate and the results were averaged. Epitope mapping Responses to individual peptides were either tested for on the first or subsequent sample after vaccination. Magnetic bead depletions (Dynal) were performed on individual peptide 25 responses. CD4+ and CD8+ T cell depletions were performed by 30 minute incubation with monoclonal antibodies to CD4 and CD8 conjugated to ferrous beads at a ratio of 5 beads: 1 cell using M-450 (Dynal, Oslo, Norway) in 200 pl RIO on ice. Antibody coated cells were removed using a magnet (Dynal). Samples were analysed according to undepleted, CD4+ depleted and CD8+ T cell depleted groups. Cell depletions were confirmed by FACS 30 scanning and were always >90% for CD8+ T cells and > 97% for CD4+ T cells (data not shown).

WO 2006/072787 22 PCT/GB2006/00002 3 Analysis of immunogenicity The ELISPOT data were analysed by subtracting the mean number of spots in the medium and cells alone control wells from the mean counts of spots in wells with antigens or peptide pools, and cells. Counts less than 5 spots/well were disregarded. A well was considered 5 positive if the count was at least twice that in the negative control wells and at least 5 spots more than the negative control wells. For the peptide pool wells, the results were summed across all the peptide pools for each volunteer at each time point. For example, where there are 7 peptide pools, each containing 9-10 peptides, each pool is tested in duplicate. The mean of this duplicate for each pool is calculated, and the mean of the negative control well is 10 subtracted, to give the result for that pool. The results for the 7 individual pools are then added together. This will potentially count twice a T cell that responds to any of the 10-mer overlap regions that occur in two pools with adjacent peptides. Statistical analysis Analysis of variance for repeated measurements using the baseline result at screening as a 15 covariate was performed on log transformed data to compare between groups. A Mann Whitney test was then used for all comparisons between groups and a Wilcoxon test used for the paired comparison of screening and 24 week samples in the BCG prime-MVA85A boost group. Cultured ELISPOT method 20 For cultured ELISPOT, I X 106 cryopreserved PBMC were stimulated with 20 pg/ml of M tb PPD ("PPD-T"), M.avium PPD ("PPD-A") or 10 pg/ml recombinant antigen 85A (Ag85A) in a 24-well plate. After a 3-day incubation period at +37 *C 5% C02 atmosphere 500 ul of the cell culture supernatant was removed and replaced with 5 IU/ml Lymphocult-T (Biotest, Dreieich, Germany) in RIO. This was repeated on day 7. On day 9 the cells were washed three 25 times and left to rest overnight in +37 *C 5% CO 2 atmosphere in RIO. On day 10, cells were washed and resuspended in 2ml of RIO, 50 pl of cultured cells (2.5 x 104 of the initially plated cells) were transferred to duplicate wells of an ELISPOT plate and stimulated for 18 hours with PPD-T 20 pg/ml, PPD-A 20 pig/ml and Ag85A 10 gg/ml. The ELISPOT plate was then developed as previously described.

WO 2006/072787 PCT/GB2006/000023 23 Results Immunisation with MVA85A was safe and well tolerated (Table 1). The kinetics and magnitude of the antigen specific T cell response induced by vaccination with BCG alone, MVA85A alone and BCG prime-MVA85A boost were compared. All three vaccination 5 regimes induce significant immune responses using either PPD-T, antigen 85 (Ag85A) protein or overlapping peptides from antigen 85A (Ag85A) as antigen in the assays (Table 2, Figure 1). There was a significant main effect of vaccine in the PPD-T (F = 3.624; P = 0.037), antigen 85 (Ag85A) (F = 16.605; P < 0.001) and summed pooled antigen 85A (Ag85A) peptide group (F = 39.982; P < 0.001). Immunisation with BCG induced moderate levels of 10 antigen-specific IFN-y secreting T cells, which peaked 4 weeks after immunization (Table 2, Figure lb-d). Responses to the pooled antigen 85A (Ag85A) peptides were strikingly weak following BCG vaccination (Figure ld). Only 4 of the 11 volunteers responded to any of the 7 peptide pools in the ex-vivo ELISPOT assay. These peptide pool responses were all attributable to peptides 12, 13, 27 and 28, and were completely abrogated by CD4+ T cell 15 depletion. Table 1: Solicited adverse events after immunisation with MVA85A There were no differences in either the frequency or severity of adverse events reported between the BCG naive and BCG primed groups 20 Adverse event No. of subjects (n = 31) Local Redness 31 Pruritus 31 Pain 30 Induration 31 Systemica Fever 5 Flu-like 11 Arthralgia 10 Headache 11 Myalgia 12 Nausea 3 Vaso-vagal syncope 1 (previous history of vaso I vagal attacks) Alterations in hematology/biochemistry 0 aAll systemic symptoms resolved within 7 d b Range 37.7-38.1*C; all resolved spontaneously within 24 h In BCG naive volunteers, a single immunisation with MVA85A induced high levels of 25 antigen-specific IFN-y secreting T cells which peaked 7 days after vaccination in 13/14 volunteers (Table 2, Figure lb-c). By 4 weeks this response had fallen to a level just above WO 2006/072787 PCT/GB2006/000023 24 baseline. No boosting effect of the second vaccination with MVA85A, administered at week 3, was seen. One volunteer did not develop insert-specific T cells following immunisation with MVA85A, however this volunteer did develop specific T cell responses to the MVA vector, despite having no previous history of vaccinia immunisation (data not shown). 5 Responses to MVA-lac-Z in volunteers vaccinated with MVA85A was further investigated by performing ex-vivo ELISPOT assays using MVA-lac-Z antigen. Assay methodology is as discussed above in "Immunogenicity measures". Healthy volunteers vaccinated with MVA85A demonstrated strong anti-MVA T cell responses which last for up to 24 weeks after vaccination. 10 In contrast to BCG vaccination, vaccination with MVA85A induced strong responses to several peptide pools in all of the 13/14 responding volunteers (Table 2, Figure Id). Responses were seen to a broad range of peptides across the whole length of antigen 85A (Ag85A). These individual peptide responses were all completely abrogated by CD4+ T cell depletion (data not shown). 15 In 16/17 volunteers in the BCG prime-MVA85A boost group, a significant rise in antigen specific T cells were seen 1 week after vaccination (Table 2, Figure 1). The peak response 1 week after immunization was significantly higher in the BCG prime-MVA85A boost group than in either the BCG or MVA85A alone groups, (Figure lb-e). These responses were sustained at a significantly higher level than after vaccination with either BCG or MVA85A 20 alone, for at least 24 weeks (Figure le). The baseline responses at screening were higher in the volunteers previously vaccinated with BCG, than in the BCG naive group, as would be expected. Nonetheless, the responses 24 weeks after vaccination with MVA85A in the BCG prime-MVA85A boost group were significantly higher than baseline counts in this group for PPD (Wilcoxon z = -3.010, P = 0.003), Antigen 85 (Ag85A) (Wilcoxon z = -3.516, P < 25 0.001) and the summed pooled peptides (Wilcoxon z= -3.408, P = 0.001). The breadth of peptide responses seen in the MVA85A alone (not shown) and BCG prime MVA85A boost groups (Figure lf) were very similar. However, the magnitude of responses was significantly higher in the BCG prime-MVA85A boost group (Figure le). PBMC from 12 volunteers in the BCG prime-MVA85A boost group were assayed with all 66 peptides 30 from antigen 85A (Ag85A). Several of these peptides were recognized by more than 50% of subjects (Figure 1f), illustrating the promiscuous recognition of these peptides by different HLA Class II molecules, as previously reported (Launois, P. et al.(1994) Infect. Immun. 62, 3679-3687.

WO 2006/072787 PCTGB2006OOOO23 25 0 E M CO M L C, :: ;; 2 N -~ N~ 0 -' -LO ID_ C w C C J Co~~ VO)a Mt' 0 0 ~ 0Om G 'a C a) to CD) 10 - ) E CL 04 CL Z; Ca CIDam NcN LOOa E N10 Ma' M- -C -to 00) cn~ NN ,- q 0.. CI Wa a)0CO1 co c) ( a C m - - N'- V 10 'c 10 N Ca oo O)COtnC' 0 v ) NN Co co or _ n co C. op 0 _ - iF-N CO' 1 U) CO C) -VNwC C) Oca) CD c) m CD C)

LU

CL. E O)CM0 C Cq P C co 0 N 10 N cn N ~ co N, C, 0 IN 0 CL CO NO CI Go CO NCON ~ C (1 2aM "Cal <, m1( COC 12 WO 2006/072787 PCT/GB2006/000023 26 The magnitude of T cell responses seen in the MVA85A alone group are stronger by a factor of about 10 than those seen with other recombinant MVAs used to date (McConkey, S.J. et al., "Enhanced T-cell immunogenicity of plasmid DNA vaccines boosted by recombinant modified vaccinia virus Ankara in humans", Nat. Med., 9, 729-735 (2003)); Mwau, M. et al., 5 "A human immunodeficiency virus 1 (HIV-1) clade A vaccine in clinical trials: stimulation of HIIV-specific T-cell responses by DNA and recombinant modified vaccinia virus Ankara (MVA) vaccines in humans", J. Gen. Virol., 85, 911-919 (2004)). A recombinant MVA expressing an antigen from P. falciparum induced a mean summed peptide response of 90 SFC/106 PBMC 7 days after vaccination (McConkey, S.J. et al. (2003) Nat. Med. 9, 729 10 735). In contrast, we see a mean response to the summed peptides of 1365 SFC/106 PBMC 7 days after vaccination with MVA85A (Table 2). One explanation for this is that these volunteers have some pre-existing anti-mycobacterial immunity, which is being boosted by immunization with MVA85A. We used a cultured, rather than an ex-vivo ELISPOT assay to investigate this further. The cultured ELISPOT assay has previously been shown to measure 15 central memory type T cells, rather than the activated effector T cells that are measured by ex vivo ELISPOT (Reece,W.H. et al. (2004) Nat. Med. 10, 406-410, Godkin, A.J. et al. (2002) J. Immunol. 169,2210-2214). A cultured IFN-y ELISPOT assay was performed on the pre-vaccination screening PBMC from 4 of the volunteers in the MVA85A alone group. Cells were cultured with M.tb PPD, 20 M.avium PPD and recombinant antigen 85A (Ag85A). All 4 volunteers responded to M.avium PPD, 2/4 responded to M.tb PPD and 2/4 responded to recombinant antigen 85A (Ag85A) (Figure 2). None of these volunteers had any baseline responses to either M.tb PPD or purified antigen 85 (Ag85A) on the screening ex-vivo ELISPOT. To further investigate the induction of a memory T cell response following vaccination with 25 MVA85A, an ex vivo and a cultured ELISPOT assay was performed on the 3 week post vaccination PBMC. Cells were cultured with M.tb PPD, M.avium PPD and recombinant antigen 85A (Ag85A). At 3 weeks the ex-vivo response is very low or undetectable, however in all 5 volunteers tested there were strong responses on the cultured ELISPOT indicating the induction by vaccination of central memory T cells specific for antigen 85A (Ag85A) (Figure 30 3).

WO 2006/072787 PCT/GB2006/000023 27 Example 2 Safety and immunogenicity data in subjects who are latently infected with M.t 9 healthy adults who were latently infected with Mycobacterium tuberculosis (M tb) were vaccinated with MVA85A. Serum inflammatory markers were measured at regular intervals 5 after vaccination in each subject over a period of twelve months. A high resolution CT scan of the lungs was performed in each subject before vaccination and 10 weeks after vaccination. These tests were performed in order to detect any subclinical signs of pulmonary inflammation. The results of the ex vivo Elispot results from the 9 latently infected volunteers are shown in Figure 5a. 10 The safety of MVA85A in this group is identical to that seen in the previous trials described in Example 1. No increase in either local or systemic side effects was detected and neither were signs of any pulmonary inflammation detected. Inflammatory markers did not change after vaccination and there was no lung inflammation detectable by CT scan post vaccination. As a comparison, 17 healthy adults who had previously received a BCG injection 0.5 to 37 15 years ago were boosted with the MVA85A vaccination. The results are described in Example 1. The immune responses post vaccination seen in the latently infected group (trial 7, "T007") are of a similar magnitude to that seen in the BCG primed group (trial 5, "T005"). The results are shown in Figures 5b and 5c. This data is significant because it is important that any new TB vaccine is safe in latently 20 infected subjects, given the prevalence of latent infection throughout the developing world. In addition, the encouraging immunogenicity supports the application of this vaccine as a post exposure vaccine, administered to latently infected people, with the aim of eradicating such latent infection. Duration of immune response 25 Ex-vivo ELISPOT responses in BCG primed volunteers after MVA85A boosting last for at least 1 year after vaccination, with both a short (1 month) and long (more than 10 years) interval between prime (BCG) and boost (MVA85A). Long term follow up data on 12 volunteers vaccinated with MVA85A more than 10 years after BCG, and 10 volunteers vaccinated with MVA85A 1 month after BCG is shown in 30 Figure 6. The data from both sets of volunteers show persistence of immune responses at 1 year after vaccination is at the same magnitude as seen at 6 months after vaccination.

WO 2006/072787 PCT/GB2006/000023 28 The persistence of vaccine induced immune responses demonstrates the induction of a memory response. One would not expect to see persistent vaccine induced responses 1 year after vaccination with a non-replicating vaccine, unless a memory response had been induced. Correlation between prime-boost interval and level of immune response 5 The data presented in Figure 3 indicates that the boosting of BCG induced immune responses seen after MVA85A boosting vaccination does not depend on the interval between BCG priming and MVA85A boosting. Equal boosting was seen with a short (1 month) and a long (more than 10 years) boosting interval. There is no correlation between the interval between prime (BCG) and boost (MVA85A) 10 vaccination and either peak (1 week) or plateau (6 months) MVA85A induced immune responses (Figure 7). Thus boosting mycobacterial immunity either soon after BCG vaccination (e.g. in infancy in the developing world), or at a later time point (e.g. in adolescence), is equally feasible. Both boosting in infancy and boosting in adolescence are possible options for efficacy trials and 15 potential indications for a booster TB vaccine. Immunogenicity and protective efficacy of BCG prime - MVA85A boost in rhesus macaques In an immunogenicity and challenge experiment, rhesus macaques (6/group) were vaccinated with either i) BCG alone, ii) BCG and then boosted 9 weeks later with MVA85A, or iii) saline 20 (control group). All animals were challenged intra-tracheally 18 weeks after the BCG vaccination (or saline vaccination for the control group) and then followed for 16 weeks before being euthanized. The immunogenicity results are shown in Figure 8. Figure 8a shows mean levels of IFN-y post vaccination (as measured by a 3 day lymphocyte stimulation test) in all three groups within this challenge experiment. Whilst levels of IFNy in 25 response to PPD in the BCG and BCG prime-MVA85A group seem comparable, the responses to Ag85A are clearly higher in the BCG prime-MVA85A boost group. Thus, there is a significant rise in Ag85A-specific IFN-y secretion after MVA85A vaccination (group ii) that is not seen in the BCG alone group (group i) (Fig 8a). Figure 8b shows mean levels of IFN-y post challenge (as measured by a 3 day lymphocyte 30 stimulation test) in all three groups within this challenge experiment. After challenge with WO 2006/072787 PCT/GB2006/000023 29 Mtb, the BCG-MVA85A group (group ii) had significantly higher Ag85A-specific responses than the BCG alone group (group i). Also the ESAT6/CFP10 responses (early secreted antigenic target protein/ culture filtrate protein 10), which are the Mtb-specific immune responses (the magnitude relates to bacterial load), are lower in the BCG and the BCG 5 MVA85A groups, compared with the saline group. The PPD responses are comparable between these two groups. The ESAT6/CFP10 results are important (lowest panel) as these antigens are TB specific and levels of immune responses to these antigens correlate with bacterial load (i.e., the higher the bacterial load (saline group), the higher the immune response to ESAT6 and CFP10). The protective efficacy of the vaccine is implied by the 10 relatively lower level of the ESAT6/CFP10 response in the BCG and the BCG-MVA85A groups, compared with the saline group. At autopsy, there was considerably less pathology seen in the BCG-MVA85A group than in the BCG alone group. The reduction in bacterial load in these 2 groups was 0.97 for the BCG-MVA85A group and 0.42 for the BCG alone group. 15 The rhesus macaque is a good model of human disease and this promising improvement in protective efficacy despite small numbers of animals suggests that similar efficacy results would be expected in humans. Safety and immunogenicity data from Phase H studies in adults in South Africa A Phase II safety and immunogenicity study has been commenced in the Western Cape, South 20 Africa. This trial is in adults and the target is 24 subjects. Subjects who are latently infected are excluded from this study. To date, 12 subjects have been vaccinated. All 12 subjects had significant MVA85A-induced immune responses on their 1 week post vaccination Elispot assay. The safety profile to date is the same as that seen in the UK and Gambia studies. The results 25 of the UK studies are shown in Figure 1 and Figure 9a and the results of the Gambian study are shown in Figure 9b. In total, 11 BCG naive volunteers and 10 BCG primed volunteers were vaccinated in the Gambia. The immunogenicity results of the BCG naive group (Figure 9b) resembled the immunogenicity results of the BCG primed group in the UK (Figures lb, 1c, ld), in that they 30 remain above base line for the duration of follow-up. This is likely to reflect a greater degree of priming by environmental mycobacteria at baseline, and also ongoing exposure to environmental mycobacteria which is maintaining the response.

WO 2006/072787 PCT/GB2006/000023 30 There is no significant difference between the BCG naive and BCG primed groups in the Gambia, which is explained as above by the greater degree of environmental priming in this group. In contrast, in the UK, the immunogenicity results of the BCG naive group returned to the base line during the follow-up (Figure 9a and Figures lb, ic and ld), whereas the BCG 5 primed group remain above base line for the duration of follow-up (Figures Ib, Ic and 1d). Throughout the BCG literature, there are many examples of wide variability in protective efficacy across different countries and continents. The consistent safety and immunogenicity profile of MVA85A in the UK, West Africa and South Africa is very significant. Immunogenicity in mice of adenovirus expressing antigen 85A (Ag85A) 10 A recombinant adenovirus (human strain 5, El and E3 deleted) expressing antigen 85A (Ag85A) has been shown to induce strong immune responses in mice when given alone (CD4 response c 800 spots/million splenocytes; CD8 response c 1200 spots/million splenocytes). When administered to mice that have previously received BCG, this adenovirus expressing antigen 85A (Ag85A) stimulates an even stronger response (CD4 response c 1400 15 spots/million splenocytes; CD8 response c 2500 spots/million splenocytes). Thus this adenovirus vector, remarkably, is shown here to induce, in addition to very strong CD4, very strong CD8 T cell responses and the induction of these by the same vaccine is likely to be of benefit in both prophylaxis and treatment of mycobacterial disease. Previously adenovirus vectors have been seen as a good means of inducing CD8 T cell responses but here we show 20 that both CD4 and CD8 responses are powerfully induced. This data suggests adenoviral vectors can be a powerful boost for BCG primed T cell responses. The invention has been described above by way of example only. It will be appreciated that modification of detail may be made without departing from the scope of the invention.

WO 2006/072787 PCT/GB2006/000023 31 AG85A SPECIFIC SEQUENCES SEQ ID NO: 1 (AG85A POLYPEPTIDE SEQUENCE) MQLVDRVRGAVTGMSRRLVVGAVGAALVSGLVGAVGGTATAGAFSRPGLPVEYLQVPS PSMG 5 RDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAAS SALTLAIYHPQQF VYAGAMSGLLDPSQAMGPTL IGLAMGDAGGYKAS DMWGPKEDPAWQRNDPLLNVGKL IANNT RVWVYCGNGKPS DLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEYW GAQLNAMKPDLQRALGAT PNTGPAPQGA 10 SEQ ID NO 2 (AG85A NUCLEOTIDE SEQUENCE) atgcagcttgttgacagggttcgtggcgccgtcacgggtatgtcgcgtcgactcgtg gtcggggccgtcggcgcggccctagtgtcgggtctggtcggcgccgtcggtggcacg gcgaccgcgggggcattttcccggccgggcttgccggtggagtacctgcaggtgccg tcgccgtcgatgggccgtgacatcaaggtccaattccaaagtggtggtgccaactcg 15 cccgccctgtacctgctcgacggcctgcgcgcgcaggacgacttcagcggctgggac atcaacaccccggcgttcgagtggtacgaccagtcgggcctgtcggtggtcatgccg gtgggtggccagtcaagcttctactccgactggtaccagcccgcctgcggcaaggcc ggttgccagacttacaagtgggagaccttcctgaccagcgagctgccggggtggctg caggccaacaggcacgtcaagcccaccggaagcgccgtcgtcggtctttcgatggct 20 gcttcttcggcgctgacgctggcgatctatcacccccagcagttcgtctacgcggga gcgatgtcgggcctgttggacccctcccaggcgatgggtcccaccctgatcggcctg gcgatgggtgacgctggcggctacaaggcctccgacatgtggggcccgaaggaggac ccggcgtggcagcgcaacgacccgctgttgaacgtcgggaagctgatcgccaacaac acccgcgtctgggtgtactgcggcaacggcaagccgtcggatctgggtggcaacaac 25 ctgccggccaagttcctcgagggcttcgtgcggaccagcaacatcaagttccaagac gcctacaacgccggtggcggccacaacggcgtgttcgacttcccggacagcggtacg cacagctgggagtactggggcgcgcagctcaacgctatgaagcccgacctgcaacgg gcactgggtgccacgcccaacaccgggcccgcgccccagggcgcctag 30 SEQ ID NO:3 (15 AMINO ACID AG85A TRUNCATION POLYPEPTIDE SEQUENCE) MQLVDRVRGAVTGMSRRLVVGAVGAALVSGLVGAVGGTATAGAFSRPGL PVEYLQVPS PSMG RDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD WYQPACGKAGCQTYKWET FLTSEL PGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQF VYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKAS DMWGPKEDPAWQRNDPLLNVGKLIANNT 35 RVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEYW

GAQLNAMKPDLQR

WO 2006/072787 32 PCT/GB2006/000023 SEQ ID NO:4 (15 AMINO ACID AG85A TRUNCATION NUCELOTIDE SEQUENCE) atgcagcttgttgacagggttcgtggcgccgtcacgggtatgtcgcgt cgactcgtggtcgg ggccgtcggcgcggccctagtgtcgggtctggtcggcgccgtcggtggcacggcgaccgcgg gggcattttcccggccgggcttgccggtggagtacctgcaggtgccgtcgccgtcgatgggc 5 cgtgacatcaaggtccaattccaaagtggtggtgccaactcgcccgccctgtacctgctcga cggcctgcgcgcgcaggacgacttcagcggctgggacatcaacaccccggcgttcgagtggt acgaccagtcgggcctgtcggtggtcatgccggtgggtggccagtcaagcttctactccgac tggtaccagcccgcctgcggcaaggccggttgccagacttacaagtgggagaccttcctgac cagcgagctgccggggtggctgcaggccaacaggcacgtcaagcccaccggaagcgccgtcg 10 tcggtctttcgatggctgcttttggcgctgacgctggcgatctatcacccccagcagttc gtctacgcgggagcgatgtcgggcctgttggacccctcccaggcgatgggtcccaccctgat cggcctggcgatgggtgacgctggcggctacaaggcctccgacatgtggggcccgaaggagg acccggcgtggcagcgcaacgacccgctgttgaacgtcgggaagctgatcgccaacaacacc cgcgtctgggtgtactgcggcaacggcaagccgtcggatctgggtggcaacaacctgccggc 15 caagttcctcgagggcttcgtgcggaccagcaacatcaagttccaagacgcctacaacgccg gtggcggccacaacggcgtgttcgacttcccggacagcggtacgcacagctgggagtactgg ggcgcgcagctcaacgctatgaagcccgacctgcaacgg SEQ ID NO:5 The 1176 nucleotide sequence of the insert is as follows (expressed sequence in upper case, Ag85A coding sequence underlined): 20 tctgtacgggcccgtacggtaccgagctcggatctgcgcgccgccaccATGGATGCA ATGAAGAGAGGGCTCTGCTGTGTGCTGCTGCTGTGTGGAGCAGTCTTCGTTTCGCCC AGCCAGGAAATCCATGCCCGATTCAGAAGAGGATCTATGCAGCTTGTTGACAGGGTT CGTGGCGCCGTCACGGGTATGTCGCGTCGACTCGTGGTCGGGGCCGTCGGCGCGGCC 25 CTAGTGTCGGGTCTGGTCGGCGCCGTCGGTGGCACGGCGACCGCGGGGGCATTTTCC CGGCCGGGCTTGCCGGTGGAGTACCTGCAGGTGCCGTCGCCGTCGATGGGCCGTGAC ATCAAGGTCCAATTCCAAAGTGGTGGTGCCAACTCGCCCGCCCTGTACCTGCTCGAC GGCCTGCGCGCGCAGGACGACTTCAGCGGCTGGGACATCAACACCCCGGCGTTCGAG TGGTACGACCAGTCGGGCCTGTCGGTGGTCATGCCGGTGGGTGGCCAGTCAAGCTTC 30 TACTCCGACTGGTACCAGCCCGCCTGCGGCAAGGCCGGTTGCCAGACTTACAAGTGG GAGACCTTCCTGACCAGCGAGCTGCCGGGGTGGCTGCAGGCCAACAGGCACGTCAAG CCCACCGGAAGCGCCGTCGTCGGTCTTTCGATGGCTGCTTCTTCGGCGCTGACGCTG GCGATCTATCACCCCCAGCAGTTCGTCTACGCGGGAGCGATGTCGGGCCTGTTGGAC CCCTCCCAGGCGATGGGTCCCACCCTGATCGGCCTGGCGATGGGTGACGCTGGCGGC 35 TACAAGGCCTCCGACATGTGGGGCCCGAAGGAGGACCCGGCGTGGCAGCGCAACGAC CCGCTGTTGAACGTCGGGAAGCTGATCGCCAACAACACCCGCGTCTGGGTGTACTGC GGCAACGGCAAGCTGTCGGATCTGGGTGGCAACAACCTGCCGGCCAAGTTCCTCGAG GGCTTCGTGCGGACCAGCAACATCAAGTTCCAAGACGCCTACAACGCCGGTGGCGGC CACAACGGCGTGTTCGACTTCCCGGACAGCGGTACGCACAGCTGGGAGTACTGGGGC 40 GCGCAGCTCAACGCTATGAAGCCCGACCTGCAACGT WO 2006/072787 PCT/GB2006/000023 33 GGATCCATTCCAAACCCTTTGCTGGGATTGGACtgactgcagatatccatcacactg SEQ ID NO:6 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGSMQLVDRVRGAVTGMSRRLVVGAV 5 GAALVSGLVGAVGGTATAGAFSRPGLPVEYLQVPSPSMGRDIKVQFQSGGANSPALY LLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQT YKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSG LLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQNDPLLNVGKLIANNTRVWV YCGNGKLSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEY 10 WGAQLNAMKPDLQRGSIPNPLLGLD

Claims (31)

1. A method of inducing a central memory T cell immune response against at least one antigen in a human patient comprising the step of administering to the patient an immunogenic composition comprising a non-replicating or replication impaired pox 5 virus vector expressing the translation product of a mycobacterial Ag85A gene.

2. The method of claim I wherein the immunogenic composition is a vectored vaccine.

3. The method of claim 1 or claim 2 wherein the T cell immune response is a CCR7+ response.

4. The method of any one of claims I to 3 wherein the non-replicating viral vector is MVA. 10

5. The method of any preceding claim wherein the viral vector expresses Ag85A with a PK C-terminus tag.

6. The method of any preceding claim wherein the viral vector expresses Ag85A with a TPA leader sequence.

7. The method of any preceding claim wherein the viral vector expresses Ag85A with a 15 truncated C-terminus.

8. The method of any preceding claim wherein the viral vector expresses the translation product of SEQ ID NO:5.

9. The method of any preceding claim wherein the viral vector further expresses the translation product of at least one additional antigen gene(s) from a mycobacterial 20 species.

10. The method of any preceding claim wherein the immunogenic composition is administered with at least one additional antigen and/or antimicrobial.

11. The method of claim 10 wherein the at least one additional antigen and/or antimicrobial is administered simultaneously, separately or sequentially. 25

12. The method of any preceding claim wherein the response is an antigen specific immune response.

13. The method of any preceding claim wherein the response is therapeutic or prophylactic.

14. Use of an immunogenic composition comprising a non-replicating or replication impaired poxvirus vector expressing the translation product of a mycobacterial Ag85A 35 gene in the manufacture of a medicament for the treatment or prevention of mycobacterial disease in a patient by inducing a central memory T cell immune response in the patient.

15. Use according to claim 14, wherein the T cell immune response is a CCR7+ response. 5

16. Use according to claim 14 or claim 15, wherein the viral vector additionally expresses the translation product of at least one additional antigen gene, and wherein the medicament is for the treatment or prevention of both mycobacterial disease and at least one additional disease in a patient.

17. Use of any one of claims 14 to 16, wherein the immunogenic composition further 10 induces a T cell immune response against the virus from which the viral vector is derived.

18. Use of an immunogenic composition comprising a. non-replicating or replication impaired poxvirus vector expressing the translation product of a mycobacterial Ag85A gene in the manufacture of a medicament for the treatment or prevention of at least one 15 disease in a patient by inducing a central memory T cell immune response, wherein the medicament is administered with at least one additional antigen.

19. Use according to claim 18, wherein the T cell immune response is a CCR7+ response.

20. Use of an antigen in the manufacture of a medicament for the treatment of disease in a patient by inducing a central memory T cell immune response wherein the medicament is 20 administered with an immunogenic composition comprising a non-replicating or replication impaired poxvirus vector expressing the translation product of a mycobacterial Ag85A gene.

21. Use according to claim 20, wherein the T cell immune response is a CCR7+ response.

22. The method of any one of claims 1 to 13 or the use of any one of claims 14 to 21, 25 wherein the T cell response is protective against a disease selected from the group consisting of tuberculosis, leprosy, Mycobacterium avium infection, non-tuberculosis mycobacterial infection, Buruli ulcer, Mycobacterium bovis infection or disease, smallpox, monkeypox, Mycobacterium paratuberculosis infection, inflammatory bowel disease, Crohns Disease, autoimmune disease, cancer and bladder cancer. 36

23. The method of any one of claims 1 to 13 or the use of any one of claims 14 to 21, wherein the patient is selected from the group consisting of children, patients who have HIV infection or AIDS, are immunocompromised or have undergone organ transplants.

24. The method of any one of claims I to 13 or the use of any one of claims 14 to 21, 5 wherein the patient has been previously exposed to Mycobacteria.

25. The method of claim 24, wherein the patient has been previously exposed to M tuberculosis.

26. The method of claim 24 or claim 25, wherein the patient is latently infected with the mycobacteria. 10

27. The method of any one of claims 1 to 13 or the use of any one of claims 14 to 21 wherein the patient has been pre-treated with BCG.

28. A vectored vaccine comprising a non-replicating or replication impaired poxvirus vector expressing the translation product of the nucleotide sequence of SEQ ID NO: 4, and additionally including a PK C-terminus tag and a TPA leader sequence. 15

29. The vectored vaccine of claim 28 wherein the viral vector expresses the translation product of the nucleotide sequence of SEQ ID NO: 5.

30. The vectored vaccine of claim 28 or claim 29, wherein the non-replicating viral vector is MVA.

31. The vectored vaccine of any one of claims 28 to 30, wherein the viral vector further 20 expresses the translation product of at least one additional antigen gene(s) from a mycobacterial species.