AU2009287446C1 - Transgenic plants with enhanced growth characteristics - Google Patents

Transgenic plants with enhanced growth characteristics Download PDF

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AU2009287446C1
AU2009287446C1 AU2009287446A AU2009287446A AU2009287446C1 AU 2009287446 C1 AU2009287446 C1 AU 2009287446C1 AU 2009287446 A AU2009287446 A AU 2009287446A AU 2009287446 A AU2009287446 A AU 2009287446A AU 2009287446 C1 AU2009287446 C1 AU 2009287446C1
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plant
gpt
transgene
seq
transgenic
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Penelope S. Anderson
Thomas J. Knight
Pat J. Unkefer
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University of Maine System
Los Alamos National Security LLC
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MAINE SYS BOARD TRUSTEES, University of
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1096Transferases (2.) transferring nitrogenous groups (2.6)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A40/00Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
    • Y02A40/10Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
    • Y02A40/146Genetically Modified [GMO] plants, e.g. transgenic plants

Abstract

Disclosed are transgenic plants exhibiting dramatically enhanced growth rates, greater seed and fruit/pod yields, earlier and more productive flowering, more efficient nitrogen utilization, increased tolerance to high salt conditions, and increased biomass yields Transgenic plants engineered to overexpress both glutamine phenylpyruvate transaminase (GPT), and glutamine synthetase (GS) are provided The GPT +GS double-transgenic plants consistently exhibit enhanced growth characteristics, with TO generation lines showing an increase in biomass over wild type counterparts of between 50% and 300% Generations that result from sexual crosses and/or selling typically perform even better, with some of the double-transgenic plants achieving an astounding four-fold biomass increase over wild type plants

Description

TRANSGENIC PLANTS WITH ENHANCED GROWTH CHARACTERISTICS
STATEMENT AS TO RIGHTS TO INVENTIONS MADE UNDER FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT
This invention was made with government support under Contract No. W-7405-ENG-36 awarded by the United States Department of Energy to The Regents of The University of California, and Contract No. DE-AC52-06MA25396, awarded by the United States Department of Energy to Los Alamos National Security, LLC. The government has certain rights in this invention.
RELATED APPLICATIONS
This application ciaims priority to United States Provisional Application No. 61/190.520 tiled August 29.2008.
BACKGROUND OF THE INVENTION
As the human population increases worldwide, and available farmland continues to be destroyed or otherwise compromised, the need for more effective and sustainable agriculture systems is of paramount interest to the human race. Improving crop yields, protein content, and plant growth rates represent major objectives in the development of agriculture systems that can more effectively respond to the challenges presented.
In recent years, the importance· of improved crop production technologies has only increased as yields for many well-developed crops have tended to plateau. Many agricultural activities are time sensitive, with costs and returns being dependent upon rapid turnover of crops or upon time to. market. Therefore, rapid plant growth is an economically important goal for many agricultural businesses that involve high-value crops such as grains, vegetables, berries and other fruits.
Genetic engineering has and continues to play an increasingly important yet controversial role in the development of sustainable agriculture technologies, A large number of genetically modified plants and related technologies have been developed in recent years, many of which are in widespread use today (Factsheet: Genetically Modified Crops in the United States, Pew initiative on Food and Biotechnology, August 2004, (pewagbiotech.org/resources/factsheeis). The adoption of transgenic plant varieties is now very substantia! and is on the rise, with approximately 250 million acres planted with transgenic plants in 2008,
While acceptance of transgenic plant technologies may be gradually increasing, particularly in the United States, Canada and Australia, many regions of the World remain slow to adopt genetically modified plants in agriculture, notably Europe. Therefore, consonant with pursuing the objectives of responsible and sustainable agriculture, there is a strong interest in the development of genetically engineered plants that do not introduce toxins or other potentially problematic substances into plants and/or the environment. There is also a strong interest in minimizing the cost of achieving objectives such as improving herbicide tolerance, pest and disease resistance, and overall crop yields. Accordingly, there remains a need for transgenic plants that can meet these objectives.
The goal of rapid plant growth has been pursued through numerous studies of various plant regulatory systems, many of which remain incompletely understood. In particular, the plant regulatory mechanisms that coordinate carbon and nitrogen metabolism are not fully elucidated. These regulatory mechanisms are presumed to have a fundamental impact on plant growth and development.
The metabolism of carbon and nitrogen in photosynthetic, organisms must be reguiated in a coordinated manner to assure efficient use of pianf resources and energy. Current understanding of carbon and nitrogen metabolism includes details of certain steps and metabolic pathways which are subsystems of larger systems. In photosynthetic organisms, carbon metabolism begins with C02 fixation, which proceeds via two major processes, termed C-3 and 04 metabolism. In plants with C~3 metabolism, the enzyme rsbulose bisphosphate carboxylase (RuSisGo) catalyzes the combination of CO2 with ribulose bisphosphate to produce 3-phosphogiycerate, a three carbon compound (G~3) that the piant uses to synthesize carbon-containing compounds, In plants with 04 metabolism, COais combined with phosphoeno! pyruvate to form acids containing four carbons (C4), in a reaction catalyzed by the enzyme phosphoenoi pyruvate carboxylase. The acids are transferred to bundle sheath cells, where they are decarboxylated to release CO2, which is then combined with ribuiose bisphosphate in the same reaction employed by G~3 plants.
Numerous studies have found that various metabolites are important in plant regulation of nitrogen metabolism. These compounds include the organic acid matate and the amino acids glutamate and glutamine. Nitrogen is assimilated by photosynthetic organisms via the action of the enzyme glutamine synthetase (GS) which catalyzes the combination of ammonia with glutamate to form glutamine. GS plays a key role in the assimilation of nitrogen in plants by catalyzing the addition of ammonium to glutamate to form glutamine in an ATP-dependent reaction (Msfiin and Habash, 2002, Journal of Experimental Botany, Vol. 53, No. 370, pp. 979-987), GS also reassimiSates ammonia released as a result of photorespiration and the breakdown of proteins and nitrogen transport compounds. GS enzymes may be divided into two general classes, one representing the cytoplasmic form (GST) and the other representing the piastidlc (i.e., chloropSastic) form (GS2).
Previous work has demonstrated that increased expression levels of GS1 result in increased levels of GS activity and plant growth, although reports are inconsistent For example, Puentes et ai. reported that CaMV S35 promoter driven overexpression of Alfalfa GS1 (cytoplasmic form) in tobacco resulted in increased levels of GS expression and GS activity in leaf tissue, increased growth under nitrogen starvation, but no effect on growth under optimal nitrogen fertilization conditions (Fuentes et at., 2001, J. Exp. Botany 52: 1071-81). Temple et a), reported that transgenic tobacco plants overexpressing the full length Alfalfa GS1 coding sequence contained greatiy elevated levels of GS transcript, and GS polypeptide which assembled into active enzyme, but did not report phenotypic effects on growth (Temple et al., 1993, Molecular and Genera! Genetics 236: 315-325). Corruzi et ai. have reported that transgenic tobacco overexpressing a pea cytosolic GS1 transgene under the control of the CaMV S35 promoter show increased GS activity, increased cytosolic GS protein, and improved growth characteristics (U.S. Patent No. 6,107,547). Unkefer et al. have more recently reported that transgenic tobacco plants overexpressing the Alfalfa GS1 in foliar tissues, which had been screened for increased leaf-to-root GS activity following genetic segregation by seifing to achieve increased GS1 transgene copy number, were found to produce increased 2~hydroxy-5-oxoproline levels in their foliar portions, which was found to lead to markedly increased growth rates over wiidtype tobacco plants (see, U.S, Patent Nos. 6,555,500; 6,593,275; and 6,831,040),
Unkefer et ai. have further described the use of 2-hydroxy-5-oxoproline (also known as 2-oxogiutaramate) to improve plant growth (U.S. Patent Nos. 6,555,500; 6,593,275; 6,831,040). In particular, Unkefer et al. disclose that increased concentrations of 2-hydroxy-5-oxoproiine in foliar tissues (relative to root tissues) triggers a cascade of events that result in increased plant growth characteristics. Unkefer et al, describe methods by which the foliar concentration of 2-hydroxy-5-oxoproiine may be increased in order to trigger increased plant growth characteristics, specifically, by applying a solution of 2-hydroxy-5-oxoproline directly to the foliar portions of the plant and over-expressing glutamine synthetase preferentially in leaf tissues. A number of transaminase and hydrolyase enzymes known to be involved in the synthesis of 2-hydroxy-5-oxoproline in animals have been identified In animal liver and kidney tissues (Cooper and Messier, 1977, GRC Critical' Reviews in Biochemistry, pages 281-303; Meister, 1952, J. Bioehem. 197: 304). in plants, the biochemical synthesis of 2-hydroxy-5-oxoproline has been known but has been poorly characterized. Moreover, the function of 2-hydroxy~5-oxoproiine in plants and the significance of its poo! size (tissue concentration) are unknown. Finaiiy, the art provides no specific guidance as to precisely what transaminase(s) or hydrolase(s) may exist and/or be active in catalyzing the synthesis of 2-hydroxy-5-oxoproiine in plants, and no such plant transaminases have been reported, isolated or characterized.
SUMMARY OF THE INVENTION
The invention relates to transgenic plants exhibiting dramatically enhanced growth rates, greater seed and fruit/pod yields, earlier and more productive flowering, more efficient nitrogen utilization,·increased tolerance to high salt conditions, and increased biomass yields. In one embodiment, transgenic plants engineered to over-express both glutamine phenylpyruvate transaminase (GPT) and glutamine synthetase (GS) are provided, The GPT+GS double-transgenic plants of the invention consistently exhibit enhanced growth characteristics, with TO generation Sines showing an increase in biomass over wild type counterparts of between 50% and 300%, Generations that resuit from sexual crosses and/or seiftng typically perform even better, with some of the double-transgenic plants achieving an astounding four-fold biomass increase over wild type plants. Similarly, flower and fruit or pod yields are also tremendously improved, with TO generation Sines typically showing 50% to 70% increases over their wild type counterparts, and in some cases showing a 100% increase. Transgenic plants exhibiting such enhanced growth phenotypic characteristics have been successfully generated across a spectrum of individual plant species, using various transformation methodologies, different expression vectors and promoters, and heterologous and homologous transgene sequences from a variety of species, as exemplified by the numerous working examples provided herein. This invention, therefore, provides a fundamental break-though technology that has the potential to transform virtually ail areas of agriculture.
Applicants have identified the enzyme glutamine phenyipyruvate transaminase (GPT) as a catalyst of 2-hydroxy-5~oxoproiine (2-oxoglutaramate) synthesis in plants. 2-oxoglutaramate is a powerful signal metabolite which regulates the function of a large number of genes involved in the photosynthesis apparatus, carbon fixation and nitrogen metabolism. The invention provides isolated nucleic acid molecules encoding GPT, and discloses the novel finding that the encoded enzyme is directly involved in the synthesis of 2~hydroxy-5~oxoproline. This aspect of the invention is exemplified herein by the disclosure of GPT polynucleotides encoding GPTs from several species, including Arabidopsis,
Grape, Rice, Soybean, Barley, Bamboo and a non-plant homolog from Zebra fish, most of which have been expressed as recombinant GPTs and confirmed as having GPT activity.
The invention further provides transgenic plants which express both a GPT transgene and a GS transgene. The expression of these two transgenes in such "double-transgene" plants results in a substantially increased rate of carbon dioxide fixation and an extremely potent growth enhancing effect, as these plants exhibit very significantly and sometimes tremendously enhanced growth rates and flower/fruit/pod/seed yields. Methods for the generation of such growth-enhanced transgenic plants are provided.
By preferentially increasing the concentration of the signal metabolite 2-oxoglutaramate (i.e., in foliar tissues), the transgenic plants of the invention are capable of producing higher overall yields over shorter periods of time, and therefore may provide agricultural industries with enhanced productivity across a wide range of crops. Importantly, unlike many transgenic plants described to date, the invention utilizes natural plant genes encoding a natural plant enzyme. The enhanced growth characteristics of the transgenic plants of the invention is achieved essentially by introducing additional GPT and GS capacity into the plant. Thus, the transgenic plants of the invention do not express any toxic substances, growth hormones, viral or bacterial gene products, and are therefore free of many of the concerns that have heretofore impeded the adoption of transgenic plants in certain parts of the World.
Herein disclosed is a transgenic plant comprising a GPT transgene and a GS transgene, wherein said GPT transgene and said GS transgene are operably linked to a plant promoter. The GS transgene may be a GS1 transgene. The GPT transgene may encode a polypeptide having an amino acid sequence selected from the group consisting of (a) SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 15. SEQ IO NO: 19, SEQ ID NO: 21. SEQ ID NO: 24, SEQ ID NO: 30, SEQ ID NO: 31, SEQ ID NO: 32, SEQ ID NO: 33, SEQ ID NO: 34. SEQ ID NO: 35 and SEQ ID NO: 36, and (b) an amino acid sequence that is at least 75% identical to any one of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 15, SEQ ID NO: 19, SEQ ID NO: 21, SEQ ID NO: 24, SEQ ID NO: 30, SEQ ID NO: 31. SEQ ID NO: 32, SEQ ID NO: 33, SEQ ID NO: 34, SEQ ID NO: 35 and SEQ ID NO: 36 and have GPT activity. The GS transgene may encode a polypeptide having an amino acid sequence selected form the group consisting of (a) SEQ ID NO: 4 and SEQ ID NO: 7 from residue 11, and (b) an amino acid sequence that is at least 75% identical to SEQ ID NO: 4 or SEQ ID NO: 7.
Thus, according to an embodiment of the present invention, there is provided a transgenic plant comprising a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene, wherein said GPT transgene and said GS transgene are each operably linked to a plant promoter, wherein said GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of amino acid sequences that have at least 80% sequence identity to any one of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 11; SEQ ID NO: 13; SEQ ID NO: 15; SEQ ID NO: 17; SEQ ID NO: 19, and SEQ ID NO: 21, and having GPT catalytic activity; and wherein said GS transgene encodes a polypeptide having an amino acid sequence selected form the group consisting of amino acid sequences that have at least 80% sequence identity to SEQ ID NO: 4 or SEQ ID NO: 7, and having GS catalytic activity.
In some embodiments, the GPT and GS transgenes are incorporated into the genome of the plant. The transgenic plant of the invention may be a monocotyledonous or a dicotyledonous plant.
The invention also provides progeny of any generation of the transgenic plants of the invention, wherein said progeny comprises a GPT transgene and a GS transgene, as well as a seed of any generation of the transgenic plants of the invention, wherein said seed comprises said GPT transgene and said GS transgene. The transgenic plants of the invention may display one or more enhanced growth characteristics rate when compared to an analogous wild-type or untransformed plant, including without limitation increased growth rate, biomass yield, seed yield, flower or flower bud yield, fruit or pod yield, larger leaves, and may also display increased levels of GPT and/or GS activity, and/or increased levels of 2-oxoglutaramate. In some embodiments, the transgenic plants of the invention display increased nitrogen use efficiency or increased tolerance to salt or saline conditions.
Methods for producing the transgenic plants of the invention and seeds thereof are also provided, including methods for producing a plant having enhanced growth properties, increased nitrogen use efficiency and increased tolerance to germination or growth in salt or saline conditions, relative to an analogous wild type or untransformed plant.
Thus, according to another embodiment of the present invention, there is provided a method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plant cells with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of_the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of transgenic plants by: introducing a glutamine phenylpyruvate transaminase (GPT) transgene into plant cells, wherein the GPT transgene encodes for a polypeptide having GPT catalytic activity, and introducing a glutamine synthetase (GS) transgene into the plant cells, wherein the GS transgene encodes for a polypeptide having GS catalytic activity, growing a plurality of transgenic plants from the plant cells transformed with the GPT and GS transgenes; (b) expressing the GPT transgene and the GS transgene in the plurality of transgenic plants or the progeny thereof, wherein said transgenic plants and said progeny produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species; and (c) selecting from said plurality of transgenic plants or said progeny a transgenic plant having at least one increased growth characteristic relative to a wild type or untransformed plant of the same species.
According to another embodiment of the present invention, there is provided a method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of transgenic plants by: introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a plurality of plants and introducing a glutamine synthetase (GS) transgene into the plurality of plants or progeny thereof, or introducing a GS transgene into the plurality of plants and introducing a GPT transgene into the plurality of plants or progeny thereof; (b) expressing the GS transgene and the GPT transgene in the plurality of transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; and, (c) selecting one of said plurality of transgenic plants having at least one increased growth characteristic and produces more 2-oxo-glutaramate relative to an analogous wild type or untransformed plant.
According to another embodiment of the present invention, there is provided a method for generating transgenic plants having increased production of 2-oxo-glutaramate by transforming plant cells with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a first plurality of plant cells and generating a first plurality of transgenic plants from said first plurality of plant cells; (b) introducing a glutamine synthetase (GS) transgene into a second plurality of plant cells and generating a second plurality of transgenic plants from said second plurality of plant cells; (c) selecting a first plant from the first plurality of transgenic plants or the progeny thereof, said plant comprising the GPT transgene; and (d) selecting a second plant from the second plurality of transgenic plants or the progeny thereof, said second plant comprising the GS transgene; and (e) crossing the first and second plants to produce a plurality of double transgenic plants, and selecting progeny comprising both transgenes and having increased production of 2-oxo-glutaramate and at least one increased growth characteristic relative to an analogous wild type or untransformed plant.
According to another embodiment of the present invention, there is provided a method for generating transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a double transgenic plant having a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene, wherein the GPT and GS transgenes are each linked to a plant promoter and the GPT transgene is an exogenous GPT gene from a plant; or the progeny thereof, wherein the polypeptide formed by the expression of the GS transgene has GS catalytic activity, and the polypeptide formed by the expression of the GPT transgene has GPT catalytic activity, and wherein said double transgenic plant and the progeny thereof produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species.
According to another embodiment of the present invention, there is provided a method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of double transgenic plants by introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a plurality of plants, and introducing a glutamine synthetase (GS) transgene into the plurality of plants or a progeny thereof; (b) expressing the GPT transgene and the GS transgene in the plurality of double transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; and (c) selecting one of said plurality of double transgenic plants having an increased biomass yield relative to a wild type or untransformed plant of the same species, wherein said selected double transgenic plant and the progeny thereof produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species.
According to another embodiment of the present invention, there is provided a method of for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of double transgenic plants by introducing a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene into a plurality of plants; (b) expressing the GS transgene and the GPT transgene in the plurality of double transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; (c) selecting a double transgenic plant from the plurality of double transgenic plants having at least one increased growth characteristic relative to a wild type or untransformed plant of the same species; and, (d) harvesting seeds from said plant and selecting a seed that demonstrates increased germination in high salt conditions.
Transgenic plants produced by methods according to the invention, as described above, as well as progeny thereof, parts thereof, and seed of any generation of said plants are also hereby provided.
BRIEF DESCRIPTION OF THE DRAWINGS
The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee. FIG. 1, Nitrogen assimilation and 2~oxog!utaramate biosynthesis: schematic of metabolic pathway. FIG, 2. Photograph showing comparison of transgenic tobacco plants overexpressing either GS1 or GPT, compared to wild type tobacco plant. From left to right: wiid type plant, Alfalfa GS1 transgene, Arabidopsis GPT transgene. See Examples 3 and 5, infra. FIG. 3. Photograph showing comparison of transgenic Micro-Tom tomato plants over-expressing either GS1 or GPT, compared to wild type tomato piant. From left to right: wiid type plant, Alfalfa GS1 transgene, Arabidopsis GPT transgene.
See Examples 4 and 8, infra. FIG, 4, Photographs showing comparisons of leaf sizes between wiid type and GS1 or GPT transgenic tobacco plants. A: Comparison between leaves from GS1 transgenic tobacco (bottom leaf) and wild type (top leaf). S: Comparison between leaves from GPT transgenic tobacco (bottom leaf) and wiid type (top leaf). FIG, 5. Photographs showing comparisons of transgenic tobacco plants generated from various crosses between GS1 and GPT transgenic tobacco fines with wild type and single transgene plants, A-C: Cross 2, 3 and 7, respectively. See Example 7, infra,
FiG, 8, Photographs showing comparisons of leaf sizes between wild type and crosses between GS1 and GPT transgenic tobacco plants. A: Comparison between leaves from GSXGPT Cross 3 (bottom leaf) and wild type (top leaf). S: Comparison between leaves from GSXGPT Cross 7 (bottom leaf) and wiid type (top leaf). See Example 7, infra. FIG. 7, Photograph of transgenic pepper plant (right) and wild type control pepper plant (left), showing larger pepper fruit yield in the transgenic plant relative to the wiid type control plant, See Example 8, infra. FIG. 8. Transgenic bean plants compared to wiid type control bean plants (several transgenic lines expressing Arabidopsis GPT and GS transgenes). Upper Left: plant heights on various days; Upper right: flower bud numbers; Lower left: flower numbers; Lower right: bean pod numbers. Wiidtype is the control, and lines 2A, 4A and 58 are all transgenic plant lines. See Example 9, infra. FIG. 9. Photograph of transgenic bean plant (right) and wiid type control bean plant (left), showing increased growth in the transgenic piant relative to the wild type control plant Transgenic line expressing Arabidopsis GPT and GS transgenes. See Example 9, infra. FIG. 10. Transgenic bean plants pods, flowers and flower buds compared to wild type control bean plants (transgenic line expressing grape GPT and Arabidopsis GS transgenes). See Example 10, infra. FIG. 11 Photograph of transgenic bean plant (right) and wild type control bean plant (left), showing increased growth in the transgenic plant relative to the wild type control plant. Transgenic line expressing Grape GPT and Arabidopsis GS transgenes. See Example 10, infra.
FiG. 12, Transgenic Cowpea Line A plants compared to wild type control Cowpea plants (transgenic line expressing Arabidopsis GPT and GS transgenes), showing that the transgenic plants grow faster and flower and set pods sooner than wild type control plants. (A) Relative height and longest leaf measurements as of May 21, (8) Relative trifolate leafs and flower buds as of June 18, (C) Relative numbers of flowers, flower buds and pea pods as of June 22. See Example 11, infra, FIG. 13. Photograph of transgenic Cowpea Line A plant (right) and wild type control Gowpea plant (left), showing increased growth in the transgenic plant relative to the wild type control plant. Transgenic line expressing Arabidopsis GPT and GS transgenes. See Example 11, infra. FIG. 14, Transgenic Cowpea Line G plants compared to wild type contra! Cowpea plants (transgenic line expressing Grape GPT and Arabidopsis GS transgenes), showing that the transgenic plants grow faster and flower and set pods sooner than wild type contra! plants. (A) plant heights, (B) flowers and pea pod numbers, (G) leaf bud and trifofate numbers. See Example 12, infra, FIG. 15. Photograph of transgenic Cowpea Line G plant (right) and wiid type contra! Cowpea plant (ieft), showing Increased growth in the transgenic plant relative to the wild type contra! plant. Transgenic line expressing Grape GPT and Arabidopsis GS transgenes. See Example 12, infra. FIG. 18, Photograph of transgenic Cantaloupe plant (right) and wild type control Cantaloupe plant (left), showing increased growth in the transgenic piant relative to the wild type control plant. Transgenic line expressing Arabidopsis GPT and GS transgenes. See Example 14, infra. FIG. 17. Photograph of transgenic Pumpkin plants (right) and wild type control Pumpkin plants (left), showing increased growth in the transgenic plants relative to the wiid type control plants. Transgenic lines expressing Arabidopsis GPT and GS transgenes. See Example 15, infm. FIG. 18. Photograph of transgenic Arabidopsis plants (right) and wiid type control Arabidopsis plants (left), showing increased growth in the transgenic plants relative to the wild type control plants. Transgenic lines expressing Arabidopsis GPT and GS transgenes. See Example 16, infra. FIG. 19. Transgenic tomato plants expressing Arabidopsis GPT and GS transgenes compared to control tomato plants. (A) Photograph of transgenic tomato plant leaves (right) vs, wild type control leaves (left) showing larger leaves in the transgenic plant. (B) Photograph of transgenic tomato plants (right) and wild type control plants (left), showing increased growth in the transgenic plants relative to the wild type control plants. See Example 17, infra. FIG. 20. Photograph of transgenic Cameiina plant (right) and wild type eontroi Cameiina plant (left), showing increased growth in the transgenie plant relative to the wild type control plant. Transgenic Sine expressing Arabidopsls GPT and GS transgenes. See Example 18, infra.
DETAILED DESCRIPTION OF THE INVENTION
OlFlMlliONS
Unless otherwise defined, all terms of art, notations and other 'scientific· terminology used herein are intended to have the meanings commonly understood by those of skill in the art to which this invention pertains. In some cases, terms with commonly understood meanings are defined herein for clarity and/or for ready reference, and the inclusion of such definitions herein should not necessarily be construed to represent a substantial difference over what is generally understood in the art. The techniques and procedures described or referenced herein are generally well understood and commonly employed using conventional methodology by those skilled in the art, such as, for example, the widely utilized molecular cloning methodologies described in Sambrook et a!., Molecular Cloning: A Laboratory Manual 3rd, edition (2001) Cold Spring Harbor Laboratory Press, Coid Spring Harbor, N.Y.; Current Protocols in Molecular Biology (Ausbel et ai., eds,, John Wiley & Sons, Inc. 2001; Transgenic Plants: Methods and Protocols (Leandro Pena, ed., Humana Press, 1st edition, 2004); and, Agrobacterium Protocols (Wan, ed, Humana Press, 2nd edition, 2006), As appropriate, procedures involving the use of commercially available kits and reagents are generally carried out in accordance with manufacturer defined protocols and/or parameters unless otherwise noted.
The term "nucleic acid" refers to deoxyribonucleotides or ribonucleotides and polymers thereof (“polynucleotides”) in either single- or double-stranded form.
Unless specifically limited, the term “polynucleotide* encompasses nucleic adds containing known analogues of natural nucleotides which have similar binding properties as the reference nucleic acid and are metabolized in a manner similar to naturally occurring nucleotides. Unless otherwise indicated, a particular nucleic acid sequence also implicitly encompasses conservatively modified variants thereof {e.g. degenerate codon substitutions) and complementary sequences and as well as the sequence explicitly indicated. Specifically, degenerate codon substitutions may be achieved by generating sequences in which the third position of one or more selected (or ail) codons Is substituted with mixed-base and/or deoxyinosine residues (Saizer et at,, 1991, Nucleic Acid Res. 19: 5081; Ohisuka et al., 1985 J, Biol, Chern. 260: 2605-2608; and Cassol et at., 1992; Rossolini et al, 1994, Moi. Ceil. Probes 8: 91*98). The term nucleic acid is used interchangeably with gene, cDNA, and mRNA encoded by a gene.
The term ’’promoter" refers to an array of nucleic acid control sequences that direct transcription of an operably linked nucleic acid. As used herein, a "plant promoter" is a promoter that functions in plants. Promoters include necessary nucieic acid sequences near the start site of transcription, such as, in the case of a polymerase i! type promoter, a TATA element. A promoter also optionally inciudes distal enhancer or repressor elements, which can be located as much as several thousand base pairs from the start site of transcription, A "constitutive" promoter is a promoter that is active under most environmental and developmental conditions. An "inducible" promoter is a promoter that is active under environmental or developmental regulation. The term "operabiy linked” refers to a functional linkage between a nucieic acid expression control sequence (such as a promoter, or array of transcription factor binding sites) and a second nucieic acid sequence, wherein the expression control sequence directs transcription of the nucleic add corresponding to the second sequence.
The terms “polypeptide,” “peptide* and “protein" are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino add residue is an artificial chemical mimetic of a corresponding naturally occurring amino acid, as well as to naturaiiy occurring amino acid polymers and non-naturaliy occurring amino acid polymers.
The term “amino acid,! refers to naturally occurring and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to the naturaiiy occurring amino adds. Naturaiiy occurring amino acids are those encoded by the genetic code, as well as those amino acids that are later modified, e.g., hydroxyproline, y-carboxygiutamate, and O-phosphoserine. Amino acid analogs refers to compounds that have the same basic chemical structure as a naturaiiy occurring amino acid, i.e., an a carbon that is bound to a hydrogen, a carboxyl group, an amino group, and an R group, e.g., homoserine, norleuctne, methionine sulfoxide, methionine methyl suifonium. Such analogs have modified R groups (e.g., norieueine) or modified peptide backbones, but retain the same basic chemical structure as a naturaiiy occurring amino acid. Amino acid mimetics refers to chemical compounds that have a structure that is different from the general chemical structure of an amino add, but that functions in a manner similar to a naturaiiy occurring amino acid.
Amino acids may be referred to herein by either their commonly known three letter symbols or by the one-letter symbols recommended by the iUPAC-iUB Biochemical Nomenclature Commission. Nucleotides, likewise, may be referred to by their commonly accepted single-letter codes.
The term "plant" includes whole plants, plant organs (e.g,, leaves, stems, flowers, roots, etc.), seeds and plant celts and progeny thereof. The class of plants which can be used in the method of the invention is generally as broad as the class of higher plants amenable to transformation techniques, including angiosperms (monocotySedonous and dicotyledonous plants), as well as gymnosperms. it includes piants of a variety of pioidy levels, including poiypioid, diploid, haploid and hemizygous.
The terms "OPT polynucleotide” and “GPT nucleic acid” are used interchangeably herein, and refer to a full length or partial length polynucleotide sequence of a gene which encodes a polypeptide involved In catalyzing the synthesis of 2-oxogfutaramate, and includes polynucleotides containing both translated (coding) and un-translated sequences, as well as the complements thereof. The term “GPT coding sequence' refers to the part of the gene which is transcribed and encodes a GPT protein. The term "targeting sequence” refers to the amino terminal part of a protein which directs the protein into a subcellular compartment of a cell, such as a chloroplast in a plant cell. GPT polynucleotides are further defined by their ability to hybridize under defined conditions to the GPT polynucleotides specifically disclosed herein, or to PCR products derived therefrom, A ”GPT transgene” is a nucleic acid molecule comprising a GPT polynucleotide which is exogenous to transgenic plant, or plant embryo, organ or seed, harboring the nucleic acid molecule, or which is exogenous to an ancestor plant, or plant embryo, organ or seed thereof, of a transgenic plant harboring the GPT polynucleotide.
The terms ”GS polynucleotide" and “GS nucleic acid” are used interchangeably herein, and refer to a full length or partial length polynucleotide sequence of a gene which encodes a glutamine synthetase protein, and includes polynucleotides containing both translated (ceding) and un-transiated sequences, as well as the complements thereof. The term ‘‘GS coding sequence” refers to the part of the gene which is transcribed and encodes a GS protein. The terms "GS1 polynucleotide" and “GS1 nucleic acid" are used interchangeably herein, and refer to a full length or partial length polynucleotide sequence of a gene which encodes a glutamine synthetase isoform 1 protein, and includes polynucleotides containing both translated (coding) and un-transiated sequences, as well as the complements thereof. The term “GS1 coding sequence” refers to the part of the gene which is transcribed and encodes a GS1 protein, A “GS transgene” is a nucleic acid molecule comprising a GS polynucleotide which is exogenous to transgenic plant, or plant embryo, organ or seed, harboring the nucleic acid molecule, or which is exogenous to an ancestor plant, or plant embryo, organ or seed thereof, of a transgenic plant harboring the GPT polynucleotide. A SGS1 transgene" is a nucleic acid molecule comprising a GS1 polynucleotide which is exogenous to transgenic plant, or plant embryo, organ or seed, harboring the nucleic acid molecule, or which is exogenous to an ancestor plant, or plant embryo, organ or seed thereof, of a transgenic plant harboring the GPT polynucleotide.
Exemplary GPT polynucleotides of the Invention are presented herein, and include GPT coding sequences for Arabidopsis, Rice, Barley, Bamboo, Soybean, Grape, and Zebra Fish GPTs.
Partial length GPT polynucleotides Include polynucleotide sequences encoding N-or C-terminal truncations of GPT, mature GPT (without targeting sequence) as well as sequences encoding domains of GPT. Exemplary GPT polynucleotides encoding N-terminal truncations of GPT include Arabidopsis -30, -45 and -56 constructs, in which coding sequences for the first 30, 45, and 56 respectively, amino acids of the full length GPT structure of SEQ ID NO: 2 are eliminated.
In employing the GPT polynucleotides of the invention in the generation of transformed ceils and transgenic plants, one of skill will recognize that the inserted polynucleotide sequence need not be identical, but may be only "substantially identical" to a sequence of the gene from which it was derived, as further defined below. The term "GPT polynucleotide’1 specifically encompasses such substantially identical variants. Similarly, one of skill will recognize that because of codon degeneracy, a number of polynucleotide sequences will encode the same polypeptide, and all such polynucleotide sequences are meant to be included in the term GPT polynucleotide. In addition, the term specifically includes those sequences substantially identical (determined as described below} with an GPT polynucleotide sequence disclosed herein and that encode polypeptides that are either mutants of wild type GPT polypeptides or retain the function of the GPT polypeptide (e.g., resulting from conservative substitutions of amino acids in a GPT polypeptide). The term “GPT polynucleotide” therefore also includes such substantially Identical variants.
The term “conservatively modified variants” applies to both amino acid and nucleic acid sequences. With respect to particular nucleic acid sequences, conservatively modified variants refers to those nucleic acids which encode identical or essentially identical amino add sequences, or where the nucleic acid does not encode an amino add sequence, to essentially identical sequences. Because of the degeneracy of the genetic code, a iarge number of functionally identical nucleic acids encode any given protein. For instance, the codons GCA, GCC, GCG and GCU all encode the amino acid alanine. Thus, at every position where an alanine is specified by a codon, the codon can be altered to any of the corresponding codons described without altering the encoded polypeptide. Such nucleic acid variations are "silent variations," which are one species of conservatively modified variations. Every nucleic acid sequence herein which encodes a polypeptide also describes every possible silent variation of the nucleic acid. One of skill will recognize that each codon in a nucleic add {except AUG, which is ordinarily the only codon for methionine, and TGG, which is ordinarily the only codon for tryptophan) can be modified to yield a functionally identical moiecuie. Accordingly, each silent variation of a nucleic acid which encodes a polypeptide is implicit in each described sequence.
As to amino add sequences, one of skill will recognize that individual substitutions, deletions or additions to a nucleic acid, peptide, polypeptide, or protein sequence which alters, adds or deletes a single amino acid or a small percentage of amino acids in the encoded sequence is a "conservatively modified variant” where the alteration results in the substitution of an amino acid with a chemically similar amino acid. Conservative substitution tables providing functionally similar amino acids are well known in the art. Such conservatively modified variants are in addition to and do not exclude polymorphic variants, interspecies homoiogs, and alleles of the invention.
The following eight groups each contain amino acids that are conservative substitutions for one another: 1) Alanine (A), Glycine (G); 2). Aspartic acid (D), Glutamic acid (E); 3) Asparagine (N), Glutamine (Q); 4} Arginine (R), Lysine (K); 5) isoleucine (i), Leucine (L), Methionine (M), Valine (V); 6) Phenylalanine (F), Tyrosine (Y), Tryptophan (W): 7) Serine (S), Threonine (T); and 8) Cysteine (C), Methionine (M) (see. e.g., Creighton, Proteins (1884)).
Macro-molecular structures such as polypeptide structures can be described in terms of various levels of organization. For a general discussion of this organization, see, e.g., Alberts et a!., Molecular Biology of the Celi (3rd ed., 1894) and Cantor and Schimmei, Biophysical Chemistry Part i: The Conformation of Biological Macromoiecuies (1980). “Primary structure” refers to the amino acid sequence of a particular peptide. “Secondary structure” refers to locally ordered, three dimensional structures within a polypeptide. These structures are commonly known as domains. Domains are portions of a polypeptide that form a compact unit of the polypeptide and are typically 25 to approximately 500 amino acids long. Typical domains are made up of sections of lesser organization such as stretches of β-sheet and «-helices, “Tertiary structure” refers to the complete three dimensional structure of a polypeptide monomer. “Quaternary structure” refers to the three dimensional structure formed by the noncovaient association of independent tertiary units, Anisotropic terms are also known as energy terms.
The term “isolated" refers to material which is substantially or essentially free from components which normally accompany the material as It is found in its native or natural state. However, the term "isolated" is not intended refer to the components present in an electrophoretic gel or other separation medium. An isolated component is free from such separation media and in a form ready for use in another application or already in use in the new appiication/miiieu. An "isolated" antibody is one that has been identified and separated and/or recovered from a component of its natural environment. Contaminant components of its natural environment are materials that would interfere with diagnostic or therapeutic uses for the antibody, and may include enzymes, hormones, and other proteinaceous or non-proteinaceous solutes. In preferred embodiments, the antibody will be purified (1) to greater than 95% by weight of antibody as determined by the Lowry method, and most preferably more than 99% by weight, (2) to a degree sufficient to obtain at least 15 residues of N-terminal or Internal amino acid sequence by use of a spinning cup sequenator, or (3) ίο homogeneity by SDS-PAGE under reducing or nonreducing conditions using Coomassie blue or, preferably, stiver stain, isolated antibody includes the antibody in situ within recombinant ceils since at least one component of the antibody’s natural environment will not be present. Ordinarily, however, isolated antibody will be prepared by at ieast one purification step.
The term “heterologous” when used with reference to portions of a nucleic acid indicates that the nucleic acid comprises two or more subsequences that are not found in the same relationship to each other in nature. For instance, a nucleic acid is typically recombinantly produced, having two or more sequences from unrelated genes arranged to make a new functional nucleic acid, e.g., a nucleic acid encoding a protein from one source and a nucleic acid encoding a peptide sequence from another source. Similarly, a heterologous protein indicates that the protein comprises two or more subsequences that are not found in the same relationship to each other in nature (e.g,, a fusion protein).
The terms "identical" or percent “identity,” in the context of two or more nucleic adds or polypeptide sequences, refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues or nucleotides that are the same (i.e., about 70% identity, preferabiy 75%, 80%, 85%, 90%, or 95% identity over a specified region, when compared and aligned for maximum correspondence over a comparison window, or designated region as measured using a sequence comparison algorithms, or by manual alignment and visual inspection. This definition also refers to the complement of a test sequence, which has substantial sequence or subsequence complementarity when the test sequence has substantial identity to a reference sequence. This definition also refers to the complement.of a test sequence, which has substantia! sequence or subsequence complementarity when the test sequence has substantial identity to a reference sequence.
When percentage of sequence identity is used in reference to polypeptides, it is recognized that residue positions that are not identical often differ by conservative amino acid substitutions, where amino acids residues are substituted for other amino acid residues with similar chemical properties (e,g,, charge or hydrophobiciiy) and therefore do not change the functional properties of the polypeptide. Where sequences differ in conservative substitutions, the percent sequence identity may be adjusted upwards to correct for the conservative nature of the substitution.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters, A “comparison window”, as used herein, includes reference to a segment of any one of the number of contiguous, positions selected from the group consisting of from 20 to 600, usually about 50 to about 200, more usually about 100 to about 150 in which a sequence may be compared to a reference sequence of the same number of contiguous positions after the two sequences are optimally aligned. Methods of alignment of sequences for comparison are well-known in the art. Optima! alignment of sequences for comparison can be conducted, e,g,, by the local homofogy algorithm of Smith &amp;. Waterman, 1981, Adv. Appi. Math. 2:482, by the homology alignment algorithm of Needleman &amp; Wunsch, 1970, J, Mol. Biol, 48:443, by the search for similarity method of Pearson &amp; Lipman, 1988, Proc. Natl Acad, Sol, USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, PASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr,, Madison, Wl), or by manual alignment and visual inspection {see, e.g., Current Protocols in Molecular Biology (Ausubel et a!., eds. 1995 supplement}}. A preferred example of algorithm that is suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2,0 algorithms, which are described in Altschul et ai,« 1977, Nuc. Acids Res, 25:3389-3402 and Altschul et al., 1990, J. Mol. 8ioL 215:403-410, respectively. BLAST and BLAST 2,0 are used, typically with the default parameters described herein, to determine percent sequence identity for the nucleic acids and proteins of the invention. Software for performing BLAST analyses is publicly availabie through the National Center for Biotechnology information. This algorithm involves first identifying high scoring sequence pairs (HSPs} by identifying short words of iength W in the query sequence, which either match or satisfy some positivevalued threshold score T when aligned with a word of the same iength in a database sequence. T is referred to as the neighborhood word score threshold (Altschul et al,, supra). These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are extended in both directions along each sequence for as far as the cumulative alignment score can be increased. Cumulative scores are calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always > 0} and N (penalty score for mismatching residues; always < 0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T, and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a word length (W) of 11, an expectation (E) of 10, M=S, N=-4 and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a word length of 3, and expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff &amp; Henikoff, Proc, Natl. Acad. Set. USA 89:10915 (1989)) alignments (B) of 50, expectation (E) of 10, M-5, N--4, and a comparison of both strands.
The BLAST algorithm also performs a statistical analysis of the similarity between two sequences (see, e.g., Karlin &amp; Alischyl, 1993, Proc. Nat’!, Acad, Sci, USA 90:5873-5787), One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N}J, which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance. For example, a nucleic acid is considered similar to a reference sequence if the smallest sum probability in a comparison of the test nucleic acid to the reference nucleic acid is less than about 0,2, more preferably less than about 0.01, and most preferably less than about 0,001.
The phrase "stringent hybridization conditions" refers to conditions under which a probe will hybridize to its target subsequence, typically in a complex mixture of nucleic acid, but to no other sequences. Stringent conditions are sequence-dependent and wifi be different in different circumstances. Longer sequences hybridize specifically at higher temperatures. An extensive guide to the hybridization of nucieic adds is found in Tijssen, Techniques in Biochemistry and Molecular Biology-Hybridization with Nucleic Probes, "Overview of principles of hybridization and the strategy of nucleic acid assays" (1993). Generally, highly stringent conditions are selected to be about 5-10:C. lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength pH. Low stringency conditions are generally selected to be about 15~30°C. below the Tm. Tm is the temperature (under defined ionic strength, pH, and nucieic concentration) at which 50% of the probes complementary to the target hybridize to the target sequence at equilibrium (as the target sequences are present in excess, at Tm, 50% of the probes are occupied at equilibrium). Stringent conditions wiii be those in which the salt concentration is less than about 1,0M sodium ton, typically about 0.01 to 1,0M sodium ion concentration (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30*C for short probes (e.g... 10 to 50 nucleotides) and at least about 60'C for long probes (e.g., greater than 50 nucleotides). Stringent conditions may also be achieved with the addition of destabilizing agents such as formamide. For selective or specific hybridization, a positive signal is at feast two times background, preferably 10 times background hybridization.
Nucleic acids that do not hybridize to each other under stringent conditions are stiit substantially identical if the polypeptides which they encode are substantially identical. This occurs, for example, when a copy of a nucleic acid is created using the maximum codon degeneracy permitted by the genetic code. In such cased, the nucleic acids typically hybridize under moderately stringent hybridization conditions.
Genomic DNA or cDNA comprising GPT polynucleotides may be identified in standard Southern blots under stringent conditions using the GPT polynucleotide sequences disclosed here. For this purpose, suitable stringent conditions for such hybridizations are those which include a hybridization in a buffer of 40% formamide, 1M NaCi, 1% SDS at 37'C, and at least one wash in 0.2 X SSC at a temperature of at least about 50°C, usually about 55;>C to about 80X, for 20 minutes, or equivalent conditions. A positive hybridization is at least twice background. Those of ordinary skill will readily recognize that alternative hybridization and wash conditions may be utilized to provide conditions of similar stringency. A further indication that two polynucleotides are substantially identical is if the reference sequence, amplified by a pair of oligonucleotide primers, can then be used as a probe under stringent hybridization conditions to isolate the test sequence from a cDNA or genomic library, or to identify the test sequence in, e.g., a northern or Southern biot, TRANSGENIC PLANTS:
The invention provides novel transgenic piants exhibiting substantially enhanced agronomic characteristics, including faster growth, greater mature plant fresh weight and total biomass, earlier and more abundant flowering, and greater fruit, pod and seed yields. The transgenic piants of the invention are generated by introducing into a plant one or more expressible genetic constructs capable of driving the expression of one or more polynucleotides encoding glutamine synthetase (GS) and glutamine phenylpyruvate transaminase (GPT). in an exemplary embodiment, single-traosgene parental lines carrying either a GPT or GS1 transgene coding sequence are generated, preferably seifed until homozygous for the transgene, then crossed to generate progeny plants containing both transgenes.
In stable transformation embodiments of the invention, one or more copies of the expressible genetic construct become integrated into the host plant genome, thereby providing increased GS and GPT enzyme capacity into the plant, which serves to mediate increased synthesis qf2-oxogiutaramate. which in turn signals metabolic gene expression, resulting in increased plant growth and the enhancement other agronomic characteristics. 2-oxoglutaramate is a metabolite which is an extremely potent effector of gene expression, metabolism and plant growth (U,S. Patent No. 6,555,500), and which may play a pivotal roie in the coordination of the carbon and nitrogen metabolism systems (Lancien et ai„ 2000, Enzyme Redundancy end the Importance of 2-Qxogiutarate in Higher Plants Ammonium Assimilation, Plant Physiol. 123: 817-824). See, also, the schematic of the 2-oxoglutaramate pathway shown in FIG. 1. in one aspect of the invention, applicants have isolated a nucleic acid molecule encoding the Arabidopsis glutamine phenylpyruvate transaminase (GPT) enzyme (see Example 1, infra), and have demonstrated for the first time that the expressed recombinant enzyme is active and capable of catalyzing the synthesis of the signal metabolite, 2-oxogfutaramate (Example 2, infra). Further, applicants have demonstrated for the first time that over-expression of the Arahidopsis glutamine transaminase gene in a transformed heterologous plant results in enhanced CO2 fixation rates and increased growth characteristics (Example 3, infra).
Applicants’ previous work demonstrated that over-expression of Alfalfa GS1 gene under the control of a strong constitutive promoter results in transgenic tobacco plants with higher ieveis of GS activity in the leaves. These plants outgrow their wild-type counterparts, fix CDs faster, contain increased concentrations of total protein, as well as increased concentrations of glutamine and 2-oxogiutaramate, and show increased rates of uptake of nitrate through their roots.
As disclosed herein (see Example 3, infra), over-expression of a transgene comprising the full-length Arabidopsis GPT coding sequence in transgenic tobacco plants also results in faster CO2 fixation, and increased levels of total protein, glutamine and 2~oxoglutaramate. These transgenic plants also grow faster than wild-type plants (FIG. 2). Similarly, in preliminary studies conducted with tomato plants (see Example 4, infra), tomato plants transformed with the Arabidopsis GPT transgene showed significant enhancement of growth rate, flowering, and seed yield In relation to wild type control plants (FIG. 3 and Example 4, infra).
In one particular embodiment, exemplified herein by way of Examples 3, 5 and 7, infra, a first set of parental single-transgene tobacco plant tines carrying the Alfatfa GS1 gene, including 5' and 3’ untranslated regions, were generated using Agrobacterium mediated gene transformation, under selective pressure, together with screening for the fastest growing phenotype, and setting to transgene/phenotype homozygosity (see Example 5, infra}. A second set of parental single-transgene tobacco plant lines carrying the full length coding sequence of Arabidopsis GPT were generated in the same manner (Example 3, infra). High growth rate performing plants from each of the parental lines were then sexually crossed to yield progeny lines (Example 7, infra).
The resulting progeny from multiple crosses of Arabidopsis GS1 and GPT transgenic tobacco plants produce far better and quite surprising increases in growth rates over the single-transgene parental lines as well as wildtype plants. FIG. 5 shows photographs of double-transgene progeny from single-transgene GS1 X GPT plant crosses, relative to wild type and single-transgene parental plants. FIG. 6 shows photographs comparing leaf sizes of doubie-transgene progeny and wild type plants. Experimentally observed growth rates in these double transgenic plants ranged between 200% and 300% over wild-type plants (Example 7, infra). Moreover, total biomass levels increased substantially in the double-transgene plants, with whole plant fresh weights typically being about two to three times the wild-type plant weights. Similarly, seed yields showed similar increases in the doubie-transgene plants, with seed pod production typically two to three times the wild type average, and overall seed yields exceeding wiid-type plant yields by 300-400%.
In addition to the transgenic tobacco plants referenced above, various other species of transgenic plants comprising GPT and GS transgenes are specifically, exemplified herein. As exemplified herein, transgenic plants showing enhanced growth characteristics have been generated in two species of Tomato (see Examples 4 and 17),. Pepper (Example 8), Beans (Examples 9 and 10), Cowpea (Examples 11 and 12), Alfalfa (Example 13), Cantaloupe (Example 14), Pumpkin (Example 15), Arabidopsis (Example 18} and Camiiena (Example 18). These transgenic plants of the invention were generated using a variety of transformation methodologies, including Agrobaciersum-mediaied callus, floral dip, seed inoculation, pod inoculation, and direct flower inoculation, as well as combinations thereof, and via sexual crosses of single transgene plants, as exemplified herein. Different GPT and GS transgenes were successfully employed in generating the transgenic plants of the invention, as exemplified herein.
The invention also provides methods of generating a transgenic plant having enhanced growth and other agronomic characteristics. In one embodiment, a method of generating a transgenic piant having enhanced growth and other agronomic characteristics comprises introducing into a piant cel! an expression cassette comprising a nucieic acid molecule encoding a GPT transgene, under the control of a suitable promoter capable of driving the expression of the transgene, so as to yield a transformed plant ceil, and obtaining a transgenic plant which expresses the encoded GPT, in another embodiment, a method of generating a transgenic plant having enhanced growth and other agronomic characteristics comprises introducing into a piant cell one or more nucleic acid constructs or expression cassettes comprising nucleic acid molecules encoding a GPT transgene and an GS transgene, under the control of one or more suitable promoters (and, optionaiiy, other regulatory elements) capable of driving the expression of the transgenes, so as to yield a plant cell transformed hereby, and obtaining a transgenic piant which expresses the GPT and GS transgenes.
Based on the results disclosed herein, it is clear that any number of GPT and GS polynucleotides may be used to generate the transgenic plants of the invention. Both GS1 and GPT proteins are highly conserved among various plant species, and it is evident from the experimental data disclosed herein that closely-related non-plant GPTs may be used as well (e.g., Danio rerio GPT). With respect to GPT, numerous GPT polynucleotides derived from different species have been shown to be active and useful as GPT transgenes. Similarly, different GS polynucleotides may be used, including without limitation any plant GS1 encoding polynucleotide that generates GS activity in a host ceil transformed with an expressible GS1 construct in a specific embodiment, the GPT transgene is a GPT polynucleotide encoding ah Arabidopsis derived GPT, such as the GPT of SEQ ID NO: 2, SEQ ID NO: 21 and SEQ ID NO: 30, and the GS transgene is a GS polynucleotide encoding an Alfalfa derived GS1 (i,e>, SEQ ID NO: 4) or an Arabidopsis derived GS1 (SEQ ID NO: 7), The GPT transgene may be encoded by the nucleotide sequence of SEQ ID NO: 1; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO; 1, and encoding a polypeptide having GPT activity; a nucleotide sequence encoding the polypeptide of SEQ ID NO: 2, or a polypeptide having at feast 75% and more preferably at least 80% sequence identity thereto which has GPT activity; and a nucleotide sequence encoding the polypeptide of SEQ ID NO: 2 truncated at its amino terminus by between 30 to 56 amino acid residues, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity. The GS1 transgene may be encoded by the polynucleotide of SEQ ID NO: 3 or SEQ ID NO: 6 or a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 3 or SEQ ID NO: 6, and encoding a polypeptide having GPT activity;; and a nucleotide sequence encoding the polypeptide of SEQ ID NO: 4 or 7, or a polypeptide having at least 75% and more preferabiy at least 80% sequence identity thereto which has GS activity. in another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Grape derived GPT, such as the Grape GPTs of SEQ ID NO: 9 and SEG ID NO; 31, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by the nucleotide sequence of SEQ ID NO: 8; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 8, and encoding a polypeptide having GPT activity: a nucleotide sequence encoding the polypeptide of SEQ ID NO: 9 or SEQ ID NO: 31, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity.
In yet another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Rice derived GPT, such as the Rice GPTs of SEQ ID NO: 11 and SEQ ID NO: 32, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by the nucleotide sequence of SEQ ID NO: 10; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 10, and encoding a polypeptide having GPT activity; a nucleotide sequence encoding the polypeptide of SEQ ID NO: 11 or SEQ ID NO: 32, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity. in yet another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Soybean derived GPT, such as the Soybean GPTs of SEQ ID NO: 13, SEQ IS NO: 33 or SEQ ID NO; 33 with a further Isoleucine at the N-terminus of the sequence, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by the nucleotide sequence of SEQ iP NO: 12; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 12, and encoding a polypeptide having GPT activity; a nucleotide sequence encoding the polypeptide of SEQ ID NO: 13 or SEQ ID NO: 33 or SEQ ID NO: 33 with a further Isoieucine at the N-terminus of the sequence, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity.
In yet another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Barley derived GPT, such as the Barley GPTs of SEQ ID NO: 15 and SEQ ID NO: 34, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by the nucleotide sequence of SEQ ID NO: 14; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 14, and encoding a polypeptide having GPT activity; a nucleotide sequence encoding the polypeptide of SEQ ID NO: 15 or SEQ ID NO:34, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity.
In yet another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Zebra fish derived GPT, such as the Zebra fish GPTs of SEQ ID NO: 17 and SEQ ID NO: 35, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by the nucleotide sequence of SEQ ID NO: 16; a nucleotide sequence having at least 75% and more preferably at least 80% identity to SEQ ID NO: 16; and encoding a polypeptide having GPT activity; a nucleotide sequence encoding the polypeptide of SEQ ID NO: 17 or SEQ ID NO: 35, or a polypeptide having at least 75% and more preferably at least 80% sequence identify thereto which has GPT activity.
In yet another specific embodiment, the GPT transgene is a GPT polynucleotide encoding a Bamboo derived GPT, such as the Bamboo GPT of SEQ ID NO: 36, and the GS transgene is a GS1 polynucleotide. The GPT transgene may be encoded by a nucleotide sequence encoding the polypeptide of SEQ ID NO: 36, or a polypeptide having at least 75% and more preferably at least 80% sequence identity thereto which has GPT activity.
Other GPT polynucleotides suitable for use as GPT transgenes in the practice of the invention may be obtained by various means, as will be appreciated by one skilled in the art, tested for the ability to direct the expression of a GPT with GPT activity in a recombinant expression system (i.e., E. coli (see Examples 20-23), in a transient in planta expression system (see Example 19), or in a transgenic plant (see Examples 1-18).
TRANSGENE CONSTRUCTS/EXPRESSION VECTORS
In order to generate the transgenic plants of the invention, the gene coding sequence for the desired transgene(s) must be incorporated into a nucleic acid construct (also interchangeably referred to herein as a (transgene) expression vector, expression cassette, expression construct or expressible genetic construct) which can direct the expression of the transgene sequence in transformed plant cells. Such nucleic add constructs carrying the transgene(s) of interest may be introduced Into a plant celi or ceils using a number of methods known in the art, Including but not limited to electroporation, DNA bombardment or biollstic approaches, microinjectfon, and via the use of various DNA-based vectors such as Agrobaeienum tumafaciens and Agrobacterium rhizogenes vectors. Once introduced into the transformed plant ceil, the nucleic acid construct may direct the expression of the incorporated transgene(s) (i,e., GPT), either in a transient or stable fashion. Stable expression is preferred, and is achieved by utilizing plant transformation vectors which are able to direct the chromosomal integration of the transgene construct. Once a plant celi has been successfully transformed, it may be cultivated to regenerate a transgenic plant, A large number of expression vectors suitable for driving the constitutive or induced expression of inserted genes in transformed plants are known, in addition, various transient expression vectors and systems are known. To a large extent, appropriate expression vectors are selected for use in a particular method of gene transformation (see, infra). Broadly speaking, a typical plant expression vector for generating transgenic plants will comprise the transgene of interest under the expression regulatory control of a promoter, a selectable marker for assisting in the selection of transformants, and a transcriptional terminator sequence.
More specifically, the basic elements of a nucleic acid construct for use in generating the transgenic plants of the invention are: a suitable promoter capable of directing the functional expression of the transgene(s) in a transformed plant cell, the transgene (s) (i.e., GPT coding sequence) operably linked to the promoter, preferably a suitable transcription termination sequence (i.e,, nopaiine synthetic enzyme gene terminator) operably linked to the transgene, and typically other elements: useful for controlling the expression of the transgene, as well as one or more selectable marker genes suitable for selecting the desired transgenic product (i.e,, antibiotic resistance genes).
As Agrobacterium tumefaciens is the primary transformation system used to generate transgenic plants, there are numerous vectors designed for Agrobacterium transformation. For stable transformation, Agrobacterium systems utilize “binary” vectors that permit plasmid manipulation in both £ coli and Agrobacterium, and typically contain one or more selectable markers to recover transformed plants (Hellens et al., 2000, Technical focus: A guide to Agrobacterium binaty Ti vectors. Trends Plant Sci 5:448-451), Binary vectors for use in Agrobacterium transformation systems typically comprise the borders of T-DfsIA, multiple cloning sites, replication functions for Escherichia coli and A. tumefaciens, and selectable marker and reporter genes.
So-called “super-binary" vectors provide higher transformation efficiencies, and generally comprise additional virulence genes from a Ti (Komari et al., 2006, Methods Mol. Biol, 343: 15-41). Super binary vectors are typically used in plants which exhibit lower transformation efficiencies, such as cereals. Such additional virulence genes include without limitation virB, virE, and virG (Vain et al, 2004, The effect of additional virulence genes on transformation efficiency„ iransgene integration and expression in rice plants using the pGreen/pSoup dual binary vector system. Transgenic Res. 13: 593-603; Srivaianakui et al, 2000, Additional virulence genes influence transgene expression: transgene copy number, integration pattern and expression. X Plant Physiol 157, 685-890; Park et al, 2000, Shorter T-DNA or additional virulence genes improve Agrobacterium-mediated transformation. Theor, Appl Genet. 101, 1015-1020; Jin et al, 1987, Genes responsible for the supervirulence phenotype of Agrobacterium tumefaciens A2S1. J. Bacteriol. 189:4417-4425). in the embodiments exemplified herein (see Examples, infra), expression vectors which place the insetted transgene(s) under the control of the constitutive CaMV 35S promoter and the RuBIsCo promoter are employed. A number of expression vectors which utilize the CaMV 35S and RuBsCo promoter are known and/or commercially available and/or derivable using ordinary skill in the art,
PLANT PROMOTERS
The term ‘promoter’ is used to designate a region In the genome sequence upstream of a gene transcription start site (TSS), although sequences downstream of TSS may also affect transcription initiation as well. Promoter elements select the transcription initiation point, transcription specificity and rate. Depending on the distance from the TSS, the terms of ‘proximal promoter’ (several hundreds nucleotides around the TSS) and ‘distal promoter’ (thousands and more nucleotides upstream of the TSS) are also used. Both proximal and distal promoters include sets of various elements participating in the complex process of ceil-, Issue-, organ-, developmental stage and environmental factors-specifie regulation of transcription. Most promoter elements regulating TSS selection are localized in the proximal promoter. A large number of promoters which are functional In plants are known in the art. in constructing GPT and GS transgene constructs, the selected' promoter(s) may be constitutive, non-specific promoters such as the Cauliflower·Mosaic Virus 35S ribosomat promoter (CaMV 35S promoter), which is widely employed for the expression of transgenes in plants, Examples of other strong constitutive promoters include without limitation the rice actin 1 promoter, the CaMV 19S promoter, the Ti plasmid nopaline synthase promoter, the alcohol dehydrogenase promoter and the sucrose synthase promoter.
Alternatively, in some embodiments, it may be desirable to select a promoter based upon the desired plant ceils to be transformed by the transgene construct, the desired expression level of the transgene, the desired tissue or subceiiular compartment for transgene expression, the developmental stage targeted, and the like.
For example, when expression in photosynthetic tissues and compartments is desired, a promoter of the rsbuiose bispliosphate carboxylase (RuBIsCg) gene may be employed. In the Examples which follow, expressible nucleic acid constructs comprising GPT and GS1 transgenes under the control of a tomato RuBisCo promoter were prepared and used in the generation of transgenic plants or to assay for GPT activity in ptania or in E, coil.
When the expression in seeds is desired, promoters of various seed storage protein genes may be employed. For expression in fruits, a fruit-specific promoter such as tomato 2AT1 may be used. Examples of other tissue specific promoters include the promoters encoding lectin (Vodkin et al., 1983, Ceil 34:1023-31; Undstrom et al, 1990, Developmental Genetics 11:160-167), com alcohol dehydrogenase 1 (Vogel et at 1989, J. Cell. Biochem, (Suppt 0) 13:Part D; Dennis et ai,, 1984, Nucl. Acids Res., 12(9); 3983-4000), corn light harvesting complex (Simpson, 1986, Science, 233; 34-38; Bansai et ai., 1992, Proc. Natl. Acad. Sci. USA, 89: 3654-3658), com heat shock protein (Odell et al., 1985, Nature, 313: 810-812; Rochester et a!,, 1988, EMBO J., 5: 451-458), pea small subunit RuBP carboxylase (Poufsen et al., 1986, Mol. Gen. Genet, 205(2): 193-200; Cashmere et ai., 1983, Gen. Eng, Plants, Plenum Press, New York, pp 29-38), Tl plasmid mannopine synthase and Ti plasmid nopaiine synthase (Langridge et at, 1989, Proc, Natl Acad. Set, USA, 86: 3219-3223), petunia chalcone isomerase (Van Tunen et al,, 1988, EMBO J. 7(5): 1257-1263), bean glycine rich protein 1 (Keller et al., 1989, EMBO J. 8(5): 1309-1314), truncated CaMV 35s (Odell et al, 1985, supra), potato patatln (Wenzler et al., 1989, Plant Mol Biol 12: 41-50), root cell (Conking et al., 1990, Plant Physiol. 93: 1203-1211), maize zetn (Reina et al., 1990, Nucl. Acids Res. 18(21): 6428; Kriz et al., 1987, Mot Gen. Genet. 207(1): 90-98; Wandeit and Feix, 1989, Nuc. Acids Res. 17(6): 2354; Langridge and Feix, 1983, Ceil 34; 1015-1022; Reina et at, 1990, NucL Acids Res. 18(21): 6426), 91060110-1 (Belanger and Kriz, 1991, Genetics 129: 863-872), α-tubuiin (Carpenter et at, 1992, Plant Cell 4(5): 557-571; Uribe et at, 1998, Plant Mot Biot 37(6): 1069-1078), cab (Sullivan, eta!., 1989, Mot Gen. Genet. 215(3): 431-440), PEPCase {Hudspeth and Grula, 1989, Plant Mol. Biol. 12: 579-589), R gene complex (Chandler et at, 1989, The Plant Cell 1: 1175-1183), ehaicone synthase (Frahken ei aL, 1991, EMBO J. 10{9): 2605-2612) and glutamine synthetase promoters (U,S, Pat No. 5,391,725; Edwards et aL, 1990, Proc. Natl. Acad, ScL USA 87: 3459-3463; BrearsetaL, 1991, Plant J, 1(2): 235-244). in addition to constitutive promoters, various inducible promoter sequences may be employed in cases where it is desirable to reguiate transgene expression as the transgenic plant regenerates, matures, flowers, etc. Examples of such inducible promoters include promoters of heat shock genes, protection responding genes (i.e„ phenylalanine ammonia lyase; see, for example Bevan et at, 1989, EMBO J. 8(7): 899-906), wound responding genes (Le., cell wall protein genes), chemically inducible genes (Le., nitrate reductase, chltinase) and dark inducibie genes (Le., asparagine synthetase; see, for example U.S. Patent No. 5,256,558). Also, a number of plant nuclear genes are activated by light, including gene families encoding the major chlorophyll a/b binding proteins (cab) as well as the small subunit of ribuiose-1,5-bisphosphate carboxylase (rbcS) (see, for example, Tobin and Sllverthorne, 1985, Annu. Rev. Plant Physiol. 36: 569-593; Dean etat, 1989, Annu. Rev. Plant Physiol. 40:415-439.),
Other inducible promoters include ABA- and turgor-inducible promoters, the auxin-binding protein gene promoter (Schwob et aL, 1993, Plant J. 4(3): 423-432), the UDP glucose flavonoid glycosyf-transferase gene promoter (Ralston et at, 1988, Genetics 119(1): 185-197); the MPi proteinase inhibitor promoter (Cordero et at, 1994, Plant J. 6(2): 141-150), the glyceraidehyde-S-phosphate dehydrogenase gene promoter (Kohler et aL, 1995, Plant Mol. Brel. 29(6): 1293-1298; Quigley et. at, 1989, J. Mol. EvoL 29(5): 412-421; Martinez et at,1989, J. Mol. Biol. 208(4): 551-565) and light inducible plastid glutamine synthetase gene from pea (U.S. Pat. No. 5,391,725; Edwards etaL, 1990, supra).
For a review of plant promoters used in plant transgenic plant technology, see Fotenza et aL, 2004, in Vitro Celi. Devet Biol - Plant, 40(1): 1-22. For a review of synthetic plant promoter engineering, see, for example, Venter, M., 2007, Trends Plant Sci., 12(3):
GLUTAMINE PHENYLPYRUVATE TRANSAMINASE (GPT) TRANSGENE
The present invention discloses for the first time that plants contain a giutamine phenylpyruvate transaminase (GPT) enzyme which is directly functional in the synthesis of the signal metabolite 2-hydroxy~5-oxGproSine. Until now, no plant transaminase with a defined function has been described. Applicants have isolated and tested GPT polynucleotide coding sequences derived from several plant and animal species, and have successfully incorporated the gene into heterologous transgenic host plants which exhibit markedly improved growth characteristics, including faster growth, higher foliar protein content, increased giutamine synthetase activity in foliar tissue, and faster 0¾ fixation rates. in the practice of the invention, the GPT gene functions as one of at least two transgenes incorporated into the transgenic plants of the invention, the other being the glutamine sythetase gene (see infra).
It is expected that all plant species contain a GPT which functions in the same metabolic pathway, involving the biosynthesis of the signal metabolite 2-hydroxy-δ-oxoproline. Thus, in the practice of the invention, any plant gene encoding a GPT homoiog or functional variants thereof may be useful in the generation of transgenic plants of this invention. Moreover, given the structural similarity between various plant GPT protein structures and the putative ( and biologically active) GPT homolog from Danio rerio (Zebra fish) (see Example 22), other non-piant GPT homoiogs may be used in preparing GPT transgenes for use in generating the transgenic plants of the invention.
When Individually compared (by BLAST alignment) to the Arabidopsis mature protein sequence provided in SEQ ID NO: 30, the following sequence identities and homoiogies (BLAST '‘positives”, including similar amino acids) were obtained for the following mature GPT protein sequences:
[SEQ ID] ORIGIN %IDENTITY %POSITIVE
[31] Grape 84 93 [32] Rice 83 91 [33] Soybean 83 93 [34] Barley 82 91 [35] Zebra fish 83 92 [36] Bamboo 81 90
Com 79 90
Castor 84 93
Poplar 85 93
Underscoring the conserved nature of the structure of the GPT protein across most plant species, the conservation seen within the above plant species extends to the non-human putative GPTs from Zebra fish and Chlamydomonas. In the case of Zebra fish, the extent of identity is very high (83% amino acid sequence identity with the mature Arabidopsis GPT of SEQ ID NO: 30, and 92% homologous taking similar amino acid residues into account). The Zebra fish mature GPT was confirmed by expressing it in E. coli and demonstrating biological activity (synthesis of 2-oxoglutaramate).
In order to determine whether putative GPT homologs would be suitable for generating the growth-enhanced transgenic plants of the invention, one need initially express the coding sequence thereof in E. coli or another suitable host and determine whether the 2-oxoglutaramate signal metabolite is synthesized at increased levels (see Examples 19-23). Where such an increase is demonstrated, the coding sequence may then be introduced into both homologous plant hosts and heterologous plant hosts, and growth characteristics evaluated. Any assay that is capable of detecting 2-oxoglutaramate with specificity may be used for this purpose, including without limitation the NMR and HPLC assays described in Example 2, infra. In addition, assays which measure GPT activity directly may be employed, such as the GPT activity assay described in Example 7.
Any plant GPT with 2-oxogiutaramate synthesis activity may be used to transform plant ceils in order to generate transgenic plants of the invention. There appears to be a high level of structural homology among plant species, which appears to extend beyond plants, as evidenced by the close homology between various plant GPT proteins and the putative Zebra fish GPT homolog. Therefore, various plant GPT genes may be used to generate growth-enhanced transgenic plants in a variety of heterologous plant species. In addition, GPT transgenes expressed in a homologous pi ant would be expected to result in the desired enhanced-growth characteristics as well (i.e., rice giutamine transaminase over-expressed in transgenic rice plants), although it is possible that regulation within a homologous ceii may attenuate the expression of the transgene in some fashion that may not be operable in a heterologous cell. GLUTAMINE. SYNTHETASE (GS> TRANSGENE:
In the practice of the invention, the giutamine synthetase (GS) gene functions as one of at least two transgenes incorporated into the transgenic plants of the invention {GPT being the other of the two).
Giutamine synthetase plays a key role in nitrogen metabolism in plants, as well as in animals and bacteria. The GS enzyme catalyzes the addition of ammonium to glutamate to synthesize glutamine in an ATP-dependent reaction. GS enzymes from assorted species show highly conserved amino acid residues considered to be important for active site function , indicating that GS enzymes "function .similarly {for review, see Eisenberg et ai., Biochirnica et Biophysics Acta, 1477:122 145, 2000), GS is distributed in different subceiiuiar locations (chloroplast and cytoplasm) and is found in various plant tissues, including leaf, root, shoot, seeds and fruits. There are two major isoforms of plant GS: the cystoiic isoform (GS1) and the plastidic {chloroplaslc) isoform (GS2), GS2 is principally found in leaf tissue and functions in the assimilation of ammonia produced by photorespiration or by nitrate reduction, GS1 is mainly found in leaf and root tissue, typically exists in a number of different isoforms in higher plants, and functions to assimilate ammonia produced by ail other physiological processes (Coruzzi, 1991, Plant Science 74; 145-155; McGrath and Coruzzi, 1991, Plant J. 1(3}; 275-280; Lam et al, 1996, Ann. Rev. Plant Physiol. Plant Mot Biol. 47; 569-593; Stitt, 1999, Curr. Op. Plant Biol. 2; 178-186; Oliveira et at, 2001, Brazilian J. Med. Biol. Res. 34: 567-575). Multiple GS genes are associated with a complex promoter repertoire which enable the expression of GS in art organ and tissue specific manner, as weli as in an environmental factor-dependent manner.
Plant glutamine synthetase consists of eight subunits, and the native enzyme in plants has a molecular mass ranging from 320 to 380 kD, each subunit having a molecular mass of between 38 and 45 kD. The GS1 genes of several plants, especially legumes, have been cloned and sequenced (Tischer et al., 1986, Mol Gen Genet, 203; 221-229; Gebhardt et al., 1986, EMBO J. 5:1429-1435; Tingey et at., 1987, EMBO J. 6; 1-9; Tirtgey et al., 1988, J Biol Chem. 263: 9651-9657; Bennett et al., 1989, Plant MoS Biol. 12: 553-565; Boron and Legocki, 1993, Gene 136: 95-102; Roche et at, 1993, Plant Mol Biol. 22: 971-983; Marsolier et a!., 1995, Plant Mo! Biol. 27: 1-15; Temple et at, 1995, Mol Riant-Microbe Interact. 8: 218-227). Ail have been found to be encoded by nuclear genes (for review, see, Morey et al, 2002, Plant Physiol. 128(1): 182-193).
Chloroplastic GS2 appears to be encoded by a single gene, while various cystoloic GSI isoforms are encoded within multigene families (Tingey et al., 1987, supra: Sakamoto et al., 1989, Plant Mol. Biol. 13; 611-614; Brears et al, 1991, supra; Li et al., 1993, Plant Mol. Biol., 23:401-407; Dubois et al., 1996, Plant Mol, Biol,, 31:803-817; Lam et at., 1996, supra), GS1 multigene families appear to encode different subunits which may combine to form homo- or hetero-octamers, and the different members show a unique expression pattern suggesting that the gene members are differentially regulated, which may relate to the various functional roles of glutamine synthetase plays in overall nitrogen metabolism (Gebhardt et al., 1986, supra; Tingey et a!., 1987, supra; Bennett et al., 1989, supra; Waiker and Coruzzi, 1989, supra; Peterman and Goodman, 1991, Mo! Gen
Genet. 1991:330:145-154.; MarsoSier et al., 1995, supra; Temple et af., 1995, supra', Dubois et al,, 1998, supra).
In one embodiment, a GS1 gene coding sequence is employed to generate GS transgene constructs, in particular embodiments, further described in the Examples, infra, the Alfalfa or Arabidopsis GS1 gene coding sequence is used to generate a transgene construct that may be used to generate a transgenic piant expressing the GS1 transgene. As an example, such a construct may be used to transform Agrobacteria, The transformed Agrobacieria are then used to generate To transgenic plants. Example 5 demonstrates the generation of To GS1 transgenic tobacco plants using this approach. Similarly, Examples 6 and 17 demonstrates the generation of To GS1 transgenic tomato plants, Example 8 demonstrates the generation of To GS1 transgenic pepper plants, Examples 9 and 10 demonstrate the generation of Tq GS1 transgenic bean plants, Examples 11 and 12 demonstrate the generation of To GS1 transgenic cowpea plants. Example 13 demonstrates the generation of To GS1 transgenic alfalfa plants, Example 14 demonstrates the generation of T0 QS1 transgenic cantaloupe plants, Example 15 demonstrates the generation of To GS1 transgenic pumpkin plants, Example 16 demonstrates the generation of T0 GS1 transgenic Arabldopsis plants, and Example 18 demonstrates the generation of To GS1 transgenic Cantaloupe plants.
In preferred embodiments, a 3! transcription termination sequence is incorporated downstream of the transgene in order to direct the termination of transcription and permit correct potyadenyiation of the mRNA transcript. Suitable transcription terminators are those which are known to function in plants, including without limitation, the nopaline synthase (MGS) and octopine synthase (OCS) genes of Agrobacterkm iumefaciens, the T7 transcript from the octopine synthase gene, the 3’ end of the protease inhibitor i or H genes from potato or tomato, the Gay V 35S terminator, the tml terminator and the pea rbcS E9 terminator, in addition, a gene’s native transcription terminator may be used, in specific embodiments, described by way of the Examples, infra, the nopaline synthase transcription terminator is employed. SELECTABLE MARKERS:
Selectable markers are typically included in transgene expression vectors in order to provide a means for selecting transformants. While various types of markers are available, various negative selection markers are typically utilized, including those which confer resistance to a selection agent that inhibits or kills untransformed ceils, such as genes which impart resistance to an antibiotic {such as kanamycin, gentamycin, anamycin, hygromyctn and hygromycinB) or resistance to a herbicide (such as sulfonylurea, gulfosinate, phosphinothricin and glyphosate). Screenable markers include, for example, genes encoding β-giucuronidase (Jefferson, 1987, Plant Mol. Biol Rep 5: 387-405), genes encoding Sucsferase (Ow et a!., 1986, Science 234; 856-859) and various genes encoding proteins involved in the production or control of anthocyanin pigments (See, for example, U.S, Patent 6,573,432). The £ coli glucuronidase gene (gus, gusA or uidA) has become a widely used selection marker in plant transgenics, largely because of the glucuronidase enzyme’s stability, high sensitivity and ease of detection (e.g., ftuorometric, spectropboiometric, various hisiochemtcal methods). Moreover, there is essentially no detectable glucuronidase in most higher plant species. TRANSFORMATION METHODOLOGIES AND SYSTEMS:
Various methods for introducing the transgene expression vector constructs of the invention into a plant or plant cell are well known to those skilled in the art, and any capable of transforming the target plant or plant cell may be utilized.
Agmbactmum-medlated transformation is perhaps the most common method utilized in plant transgenics, and protocols for Agrobacterium-mediated transformation of a iarge number of plants are extensively described in the literature (see, for example, Agrobacterium Protocols, Wan, ed., Humana Press, 2nd edition, 2006). Agrobacterium tumefaciens is a Gram negative soil bacteria that causes tumors (Crown Gafi disease) in a great many dicot species, via the insertion of a small segment of tumor-inducing DNA ("T-DNA”, 'transfer DMA’) into the plant celt which is incorporated at a semi-random location into the plant genome, and which eventually may become stably incorporated there. Directly repeated DMA sequences, called T-DNA borders, define the left and the right ends of the T-DNA. The T-DNA can be physically separated from the remainder of the Ts-piasmid, creating a 'binary vector1 system,
Agrobacierium transformation may be used for stably transforming dicots, monocots, and ceils thereof (Rogers et ai., 1986, Methods Enzymo!,, 118: 627-841; Hernalsteen eta!,, 1984, EMBO J., 3: 3039-3041; Hoykass-Van Slogteren et at., 1984, Nature, 311: 763-764; Grimsiey et ai., 1987, Nature 326: 167-1679; Boulton et a!., 1989, Rant Mol. Biol 12: 31-40; Gould et ai,, 1991, Plant Physiol. 95; 426-434). Various methods for introducing DNA into Agrobacteria are known, including electroporation, freeze/thaw methods, and triparentai mating. The most efficient method of placing foreign DNA into Agrobacterium is via electroporation {Wise et ai., 2008, Three Methods for the Introduction of Foreign DNA into Agrobacierium, Methods in Molecular Biology, vol. 343: Agrohacierium Protocols, 2/e, volume 1; Ed., Wang, Humana Press Inc., Totowa, NJ, pp. 43-53), In addition, given that a large percentage of T-DNAs do riot integrate, Agrobacterium-medmted transformation may be used to obtain transient expression of a transgene via the transcriptional competency of unincorporated transgene construct molecules (Helens et ai., 2005, Plant Methods 1:13). A large number of Agrobacterium transformation vectors and methods have been described (Karimi et at·., 2002, Trends Plant Set. 7(5); 193-5), and many such vectors may be obtained commercially {for example, Inyltrogen). in addition, a growing number of “open-source” Agrobacterium transformation vectors are available (for example, pCambia vectors; Gambia, Canberra, Australia). See, also, subsection herein on TRANSGENE CONSTRUCTS, supra. In a specific embodiment described further in the Examples, a pMON316-based vector was used in the leaf disc transformation system of Horsch et al. (Horsch et a!., 1995. Science 227:1229-1231) to generate growth enhanced transgenic tobacco and tomato plants.
Other commonly used transformation methods that may be employed in generating, the transgenic plants of the invention include without limitation microprojectiie bombardment, or bioiistic transformation methods, protoplast transformation of naked DNA by calcium, polyethylene glycol (PEG) or electroporation (Paszkowski et at, 1984, EMBO J. 3: 2727-2722; Potrykus et a!., 1985, Mol. Gen, Genet 199: 189-177; Fromm et at., 1985, Proc. Nat, Acad. Sci. USA 82: 5824-5828; Shimamoto et ai., 1989, Nature, 338: 274-276.
Bioiistic transformation involves Injecting millions of DNA-coated metal particles into target ceils or tissues using a bioiistic device (or “gene gun”), several kinds of which are available, eommerdaiiy; once inside the cell, the DNA elutes off the particles and a portion may be stably incorporated into one or more of the cell’s chromosomes (for review, see Kikkert et at., 2005, Stable Transformation of Plant Cells by Particle Bombardment/Biotistics, in: Methods in Molecular Biology, vol. 286: Transgenic Plants: Methods and Protocols, Ed, L Pena, Humana Press Inc,, Totowa., NJ),
Electroporation is a technique that utilizes short, high-intensity electric fields to permeabiiize reversibly the lipid bilayers of cell membranes (see, for example, Fisk and Dandekar, 2005, Introduction and Expression of Transgenes in Plant Protoplasts, in: Methods in Molecular Biology, vol. 286: Transgenic Plants: Methods and Protocols, Ed, L Pena, Humana Press Inc., Totowa, NJ, pp, 79-90; Fromm et a!.,1987, Electroporation of DNA and RNA into plant protoplasts, in Methods in Enzymology, Vol, 153, Wu and Grossman, eds., Academic Press, London, UK, pp. 351-366: Joersbo and Brunstedt, 1991, Electroporation: mechanism and transient expression, stabfe transformation and biological effects in plant protoplasts. Physiol, Plant. 81, 256-264; Bates, 1994, Genetic transformation of plants by protoplast electroporation. Mol. Biotech. 2: 135-145; Dtlfen et a!., 1998, Electroporation-mediated DNA transfer to plant protoplasts and intact plant tissues for transient gene expression assays, in Ceil Biology, Vol. 4, ed., Cells, Academic Press, London, UK, pp. 92-99). The technique operates by creating aqueous pores in the bacterial membrane, which are of sufficiently large size to allow DNA molecules (and other macromolecules) to enter the cell, where the transgene expression construct (as T-DNA) may be stably incorporated into plant genomic DMA, leading to the generation of transformed cells that can subsequently be regenerated into transgenic plants,
Newer transformation methods include so-called “floral dip" methods,, which offer the promise of simplicity, without requiring plant tissue culture, as is the case with ail other commonly used transformation methodologies (Bent et al., 2006, Ambidopsis thatiana Floral Dip Transformation Method, Methods Mol Bioi, voi, 343: Agrobacierkm Protocols, 2/e, volume 1; Ed., Wang, Humana Press ine„ Totowa, NJ, pp. 87-103; Clough and Bent, 1998, Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaiianaf Plant J, 16: 735-743), However, with the exception of Arabidopsis, these methods have not bean widely used across a broad spectrum of different plant species, Briefly, floral dip transformation is accomplished by dipping or spraying flowering plants in with an appropriate strain of Agrohacterium tumefadens. Seeds coilected from these To plants are then germinated under selection to identify transgenic Ti individuals. Example 16 demonstrated floral dip inoculation of Arabidopsis to generate transgenic Arabidopsis plants.
Other transformation methods include those in which the developing seeds or seedlings of plants are transformed using vectors such as Agrobacterium vectors. For example, as exemplified in Example 8, such vectors may be used to transform developing seeds by injecting a suspension or mixture of the vector (i.e., Agmbacteria) direcfiy into the seed cavity of developing pods (i.e., pepper pods, bean pods, pea pods and the like). Seedlings may be transformed as described for Alfalfa in Example 13. Germinating seeds may be transformed as described for Camelina in Example 18. intra-fruit methods, in which the vector is injected into fruit or developing fruit, may be used as described for Cantaloupe melons in Example 14 and pumpkins in Example 15.
Still other transformation methods include those in which the flower structure is targeted for vector inoculation, such as the flower inoculation methods described for beans in Examples 9 and 10, peas in Examples 11 and 12 and tomatoes in Example 17.
The foregoing plant transformation roethodotogies may be used to introduce transgenes into a number of different plant ceils and tissues, including without limitation, whole plants, tissue and organ explants including chloroplasts, flowering tissues and cells, protoplasts, meristem ceils, callus, immature embryos and gametic cells such as microspores, pollen, sperm and egg ceils, tissue cultured ceils of any of the foregoing, any other ceils from which a fertile regenerated transgenic plant may be generated. Callus is initiated from tissue sources including, but not limited to, immature embryos, seedling apicai meristems, microspores and the like. Celis capable of proliferating as callus are also recipient cells for genetic transformation.
Methods of regenerating individual plants from transformed plant ceils, tissues or organs are known and are described for numerous plant species.
As an illustration, transformed plantlets (derived from transformed celis or tissues) are cultured in a root-permissive growth medium supplemented with the selective agent used in the transformation strategy (i.e., and antibiotic such as kanamycin). Once rooted, transformed piantlets are then transferred to soil and allowed to grow to maturity. Upon flowering, the mature plants are preferably selfed (self-fertilized), and the resultant seeds harvested and used to grow subsequent generations. Examples 3 - 6 describe the regeneration of transgenic tobacco and tomato plants.
To transgenic plants may be used to generate subsequent generations (e.g,, Tt, Ta, etc.) by selfing of primary or secondary transformants, or by sexual crossing of primary or secondary transformants with other plants (transformed or untransformed). For example, as described in Example 7, Mm, individual plants over expressing the Alfalfa GS1 gene and outperforming wildtype plants were crossed with individual plants over-expressing the Arabidopsis GPT gene and outperforming wildtype plants, by simple sexuai crossing using manual pollen transfer. Reciprocal crosses were made such that each plant served as the male in a set of crosses and each plant served as the female in a second set of crosses. During the mature plant growth stage, the plants are typically examined for growth phenotype, CO2 fixation rate, etc. (see following subsection). SELECTION OF GROWTH-ENHANCED TRANSGENIC PLANTS:
Transgenic plants may be selected, screened and characterized using standard methodologies. The preferred transgenic plants of the invention will exhibit one or more phenotypic characteristics indicative of enhanced growth and/or other desirable agronomic properties. Transgenic plants are typically regenerated under selective pressure in order to select transformants prior to creating subsequent transgenic plant generations. In addition, the selective pressure used may be employed beyond To generations in order to ensure the presence of the desired transgene expression construct or cassette.
To transformed plant cells, calli, tissues or plants may be identified and isolated by selecting or screening for the genetic composition of and/or the phenotypic characteristics encoded by marker genes contained in the transgene expression construct used for the transformation. For example, selection may be conducted by growing potentially-transformed plants, tissues or cells in a growth medium containing a repressive amount of antibiotic or herbicide to which the transforming genetic construct can impart resistance. Further, the transformed plant cells, tissues and plants can be identified by screening for the activity of marker genes (such as β-glucuronidase) which may be present in the transgene expression construct.
Various physical and biochemical methods may be employed for identifying plants containing the desired transgene expression construct, as is well known. Examples of such methods include Southern blot analysis or various nucleic acid amplification methods (i.e., PCR) for identifying the transgene, transgene expression construct or elements thereof; Northern blotting, SI RNase protection, reverse transcriptase PCR (RT-PCR) amplification for detecting and determining the RNA transcription products, and protein gel electrophoresis, Western blotting, immunoprecspitation, enzyme immunoassay, and the like for identifying the protein encoded and expressed by the transgene- in another approach, expression levels of genes, proteins and/or metabolic compounds that are know to be modulated by transgene expression in the target plant may be used to identify transformants. In one embodiment of the present invention , increased levels of the signal metabolite 2-oxogiutaramate may be used to screen for desirable transformants, as exemplified in the Examples, Similarly, increased levels of GPT and/or GS activity may be assayed, as exemplified in the Examples.
Ultimately, the transformed plants of the invention may be screened for enhanced growth and/or other desirable agronomic characteristics. Indeed, some degree of phenotypic screening is generally desirable in order to identify transformed lines with the fastest growth rates, the highest seed yields, etc,, particuiariy when identifying plants for subsequent selfmg, cross-breeding and back-crossing. Various parameters may be used for this purpose, including without limitation, growth rates, total fresh weights, dry weights, seed and fruit yields (number, weight), seed and/or seed pod sizes, seed pod yields (e.g«, number, weight), leaf sizes, plant sizes, increased flowering, time to flowering, overall protein content (in seeds, fruits, plant tissues), specific protein content (i.e., GS), nitrogen content, free amino add, and spedfic metabolic compound levels (I.e., 2~oxogiutaramate). Generally, these phenotypic measurements are compared with those obtained from a parental identical or analogous plant line, an untransformed identical or analogous plant, or an identical or analogous wild-type plant (i.e., a normal or parental plant). Preferably, and at least initially, the measurement of the chosen phenotypic characteristic^} in the target transgenic plant is done in parallel with measurement of the same characteristic(s) in a normal or parental plant. Typically, multiple plants are used to establish the phenotypic desirability and/or superiority of the transgenic plant in respect of any particular phenotypic characteristic.
Preferably, initial transformants are selected and then used to generate Ti and subsequent generations by selfing (self-fertilization), until the transgene genotype breeds true (i.e., the plant is homozygous for the transgene). In practice, this is accomplished by selfing for 3 or 4 generations, screening at each generation for the desired traits and setting those individuals. As exemplified herein, transgenic plant lines propagated through at least one sexual generation (Tobacco, Arabidopsis, Tomato) demonstrated higher transgene product activities compared to lines that did not have the benefit of sexual reproduction and the concomitant increase in transgene copy number.
Stable transgenic lines may be crossed and back-crossed to create varieties with any number of desired traits, including those with stacked transgenes, multiple copies of a transgene, etc. Additionally, stable transgenic plants may be further modified genetically, by transforming such plants with further transgenes or additional copies of the parental transgene. Also contemplated are transgenic plants created by single transformation events which introduce multiple copies of a given transgene or multiple transgenes. Various common breeding methods are well known to those skilled in the art (see, e.g., Breeding Methods for Cultivar Development, Wilcox J. ed., American Society of Agronomy, Madison Wis. (1987)).
In a another aspect, the invention provides transgenic plants characterized by increased nitrogen use efficiency. Nitrogen use efficiency may be expressed as plant yield per given amount of nitrogen. In the Examples provided herein, the transgene and control plants all received the same nutrient solutions in the same amounts. The transgenic plants were consistently characterized by higher yields, and thus have higher nitrogen use efficiencies.
In yet another aspect, the invention provides transgenic plants and seeds thereof with increased tolerance to high salt growth conditions. This aspect of the invention is exemplified by Example 24, which describes the germination of transgenic tobacco plant seeds in very high salt conditions (200 mM NaCl). While counterpart wild type tobacco seeds germinated at a rate of only about 10%, on average, the transgenic tobacco seeds achieved nearly the same rate of germination obtained under no salt conditions for both transgenic and wild type seeds, or about 92%.
EXAMPLES
Various aspects of the invention are further described and illustrated by way of the several examples which follow,. hone of which are intended to limit the scope of the invention. EXAMPLE t: ISLOATION OF ARABIDOPSIS GLUAMINE PHENYLPYRUVATE TRANSAMiNASE (GPT) GENE:
In an attempt to iocate a piant enzyme that is directly involved in the synthesis of the signal metabolite 2-oxoglutaramate, applicants hypothesized that the putative piant enzyme might bear some degree of structural relationship to a human protein that had been characterized as being involved in the synthesis of 2-oxogiutaramaie. The human protein, glutamine transaminase K (E.C. 2.6.1.64) (also referred In the literature as cysteine conjugate δ -lyase, kyneurenine aminotransferase, glutamine phenyipyruvate transaminase, and other names), had been shown to be involved in processing of cysteine conjugates of haiogenated xenobiotics (Ferry et al„ 1995, FEBS Letters 360:277-280). Rather than having an activity involved in nitrogen metabolism, however, human cysteine conjugate 6-lyase has a detoxifying activity in humans, and in animals. Nevertheless, the potential involvement of this protein in the synthesis of 2-oxoglutaramate was of interest
Using the protein sequence of human cysteine conjugate 6-lyase, a search against the TIGR Arabidopsis plant database of protein sequences identified one potentially related sequence, a poiypeptide encoded by a partial sequence at the Arabidopsis gene iocus at At1q77670, sharing approximately 36% sequence homology/identity across aligned regions.
The full coding region of the gene was then amplified from an Arabidopsis cDNA library (Stratagene) with the following primer pair: 5-CCCATCGATGTACC- TGGACATAAATGGTGTGATG~3, 5- GATGGTACCTCAGACTTTTCTCTTAAGCTTCTGCTTC-3’
These primers were designed to incorporate Ola I tATCGATi and Κρη I (GGTACC) restriction sties to facilitate subsequent subcloning into expression vectors for generating transgenic plants. Takara ExTaq DNA polymerase enzyme was used for high fidelity PCR using the following conditions: initial denaturing 94G for 4 minutes, 30 cycles of 94C 30 second, annealing at 55G for 30 seconds, extension at 72C for 90 seconds, with a final extension of 72C for 7 minutes. The amplification product was digested with Cla I and Κρη I restriction: enzymes, isolated from an agarose gel electrophoresis and ligated into vector pMon316 (Rogers, at. at. 1987 Methods in Enzyrnoiogy 153:253-277} which contains the cauliflower mosaic virus (CaMV, also CMV) 35S constitutive promoter and the nopaline synthase (NOS) 3' terminator. The ligation was transformed into DH5« ceils and transformants sequenced to verify the insert. A 1.3 kb cDNA was isolated and sequenced, and found to encode a foil length protein of 440 amino acids in length, including a putative ehioroplast signal sequence. EXAMPLE 2: PRODUCTION OF BIOLOGICALLY ACTIVE RECOMBINANT ARABiDQPSIS GLUTAMINE PHENYL PYRUVATE TRANSAMINASE (OPT):
To test whether the protein encoded by the cDNA isolated as described in Example 1, supra, is capable of catalyzing the synthesis of 2- oxoglutaramate, the cDNA was expressed in £ coil, purified, and assayed for its ability to synthesize 2-oxoglutaramate using a standard method,
Briefly, the resulting purified protein was added to a reaction mixture containing 150 mM Tris-HCi, pH 8.5, 1 mM beta mercaptoethanol, 200 mM glutamine, 100 mM giyoxylate and 200 microiVI pyridoxal S’-phosphate. The reaction mixture without added test protein was used as a control. Test and control reaction mixtures were incubated at 37X for 20 hours, and then clarified by centrifugation to remove precipitated material. Supernatants were tested for the presence and amount of 2-oxog!utaramate using t3C NMR with authentic chemically synthesized 2-oxogiutaramate as a reference. The products of the reaction are 2« oxoglutaramate and glycine, while the substrates (glutamine and giyoxylate) diminish in abundance. The cyclic 2-oxogiutaramate gives rise to a distinctive signal allowing it to be readily distinguished from the open chain glutamine precursor. HPLC Assay for 2-oxoaiutaraffiate:
An alternative assay for GPT activity uses HPLC to determine 2-oxoglutaramate production, following a modification of Calderon et at., 1985, J Bacteriol 161(2): 807-809, Briefly, a modified extraction buffer consisting of 25 mfVI Tris-HCS pH 8,5,1 mM EDI A. 20 μΜ FAD, 10 mM Cysteine, and -1.5% (v/v) Mercaptoethanoi. Tissue samples from the test materia! (Le., plant tissue) are added to the extraction buffer at approximately a 1/3 ratio (w/v), incubated for 30 minutes at 37^C, and stopped with 2Q0ul of 20% TCA. After about 5 minutes, the assay mixture is centrifuged and the supernatant used to quantify 2-oxogiutaramate by HPLC, using an ION-300 7.8mm ID X 30 cm L column, with a mobile phase in 0.01 N h2S04, a flow rate of approximately 0.2 mi/min, at 40*C. Injection volume is approximately 20 uf, and retention time between about 38 and 39 minutes. Detection is achieved with 210nm UV light.
Results Using NMR Assay:
This experiment revealed that the test protein was able to catalyze the synthesis of 2- oxoglutaramate. Therefore, these data indicate that the isolated cDNA encodes a glutamine phenyipyruvate transaminase that is directly involved in the synthesis of 2-oxogiutaramate in plants. Accordingly, the test protein was designated Arabidopsis glutamine phenyipyruvate transaminase, or “GPT”.
The nucleotide sequence of the Arabidopsis GPT coding sequence is shown in the Table of Sequences, SEG !D NO, 1. The translated amino acid sequence of the GPT protein is shown in SEG ID NO. 2. EXAMPLE 3: CREATION OF TRANSGENIC TOBACCO PLANTS OVER-EXPRESSING ARABIDOPSIS GPT*
Briefly, the plant expression vector pMon316-PJU was constructed as follows. The isolated cDNA encoding Arabidopsis GPT {Example 1} was cloned into the Ciai-Kpnl poiyiinker site of the pWON316 vector, which places the GPT gene under the control of the constitutive cauliflower mosaic virus (CaMV) 35S promoter and the nopaline synthase (NOS) transcriptional terminator. A kanamycin resistance gene was included to provide a selectable marker.
Agrobacterium-Mediated Plant Transformations: pMON-PJU and a control vector pMon316 (without inserted DNA) were transferred to Agrobacterium tumefaciens strain pTiTT37AS£ using a standard electroporation method (McCormac et al., 1998, Molecular Biotechnology 9:155-159), followed by plating on LB plates containing the antibiotics spectinomycin (1Ό0 micro gm / ml) and kanamycin (50 micro gm / mi). Antibiotic resistant colonies of Agrobacterium were examined by PCR to assure that they contained plasmid,
Nicofiana tabaeum cv. Xanthi plants were transformed with pMON-PJU transformed Agrobacteria using the Seat disc transformation system of Horsch et. ai. (Horsch et al.,1995, Science 227:1229-1231). Briefly, sterile leaf disks were inoculated and cultured for 2 days, then transferred to selective MS media containing 100 pg/mi kanamycin and 500 pg/ml ciafaran. Transformants were confirmed by their ability to form roots in the selective media.
Generation of GPT Transgenic Tobacco Plants:
Sterile leaf segments were allowed to develop callus on Murashige &amp; Skoog (M&amp;S) media from which the transformant piantlefs emerged. These pSantiets were then transferred to the rooting-permissive selection medium (M&amp;S medium with kanamycin as the selection agent). The healthy, and now rooted, transformed tobacco piantiets were then transferred to soil and allowed to grow to maturity and upon flowering the plants were seifed and the resultant seeds were harvested. During the growth stage the plants had been examined for growth phenotype and the C02 fixation rate was measured for many of the young transgenic plants.
Production of T1 and T2 Generation GPT Transgenic Piants:
Seeds harvested form the T0 generation of the transgenic tobacco plants were germinated on M&amp;S media containing kanamycin (100 mg / L) to enrich for the transgene. At least one fourth of the seeds did not germinate on this media (kanamycin is expected to inhibit germination of the seeds without resistance that would have been produced as a result of normai genetic segregation of the gene) and more than haif of the remaining seeds were removed because of demonstrated sensitivity (even mild) to the kanamycin.
The surviving piants (Tj generation) were thriving and these piants were then seifed to produce seeds for the T2 generation. Seeds from the T, generation were germinated on MS media supplemented for the transformant lines with kanamycin (lOmg/liter). After 14 days they were transferred to sand and provided quarter strength Hoagiande nutrient solution supplemented with 25 mM potassium nitrate. They were allowed to grow at 24°C with a photoperiod of 16 h light and 8 hr .dark with a light intensity of 900 micromoles per meter squared per second. They were harvested 14 days after being transferred to the sand culture.
Characterization of GPT Transgenic Plants:
Harvested transgenic piants (both GPT transgenes and vector control transgenes) were analyzed for glutamine sythetase activity in root and leaf, whoie plant fresh weight, total protein in root and Seat and COa fixation rate (Knight et al.( 1988, Piant Physio!. 88: 333). Non-transformed, wild-type A. tumefaciens piants were also analyzed across the same parameters in order to establish a baseline control.
Growth characteristic resuits are tabulated below in Table I, Additionally, a photograph of the GPT transgenic plant compared to a wild type control plant is shown in FIG- 2 (together with GS1 transgenic tobacco plant, see Example 5). Across ai! parameters evaluated, the GPT transgenic tobacco plants showed; enhanced growth characteristics, in particular, the GPT transgenic plants exhibited a greater than 50% increase in the rate of C02 fixation, and a greater than two-fold increase in glutamine synthetase activity in leaf tissue, relative to wild type control piarsts. In addition, the ieaf-to-root GS ratio increased by almost three-fold in the transaminase transgenic plants relative to wild type control Fresh weight and total protein quantity also increased in the transgenic plants, by about 50% and 80% (leaf)- respectively, relative to the wild type contra!, These data demonstrate that tobacco plants overexpressing the Ambidopsts GPT transgene achieve significantly enhanced growth and CO* fixation rates.
Table I
Data » average of three piants
Wild type - Control piants; not regenerated or transformed. PN1 lines were produced by regeneration after transformation using a construct without inserted gens. A cqniroi against the processes of regeneration and transformation. PN 9 lines were produced by regeneration after transformation using a construct with the Arabidopsis GPT gene. EXAMPLE 4: GENERATION OF TRANSGENIC TOMATO PLANTS CARRYING ARABIBOPSiS OPT TRANSGENE:
Transgenic Lycopersicon asculentum (Micro-Tom Tomato) plants carrying the Arabidopsis GPT transgene were generated using the vectors and methods described in Example 3. To transgenic tomato plants were generated and grown to maturity, initial growth characteristic data of the GPT transgenic tomato plants is presented in Table IS. The transgenic plants showed significant enhancement of growth rate, flowering, and seed yield in relation to wild type control plants, In addition, the transgenic plants developed multiple main stems, whereas wild type plants developed with a single main stem. A photograph of a GPT transgenic tomato plant compared to a wild type piant is presented in FIG. 3 (together with GS1 transgenic tomato plants, see Example 8). TABLE I!
EXAMPLE 5: GENERATION OF TRANSGENIC TOBACCO PLANTS OYEREXPRESSING ALFALFA GS1:
Transgenic tobacco plants overexpressing the Alfalfa GS1 gene were generated as previously described (Temple et al., 1993, Mol, Gen. Genetics 238: 315-325). Briefly, the plant expression vector pGS111 was constructed by inserting the entire coding sequence together with extensive regions of both the 5* and 3’ untranslated regions of the Alfalfa GS1 gene [SEQ ID NO: 3] (DasSarma at ai,, 1988, Science, Vol 232, Issue 4755, 1242-1244) into pMON316 (Rogers et al, 1987, supra), placing the transgene under the control of the constitutive cauliflower mosaic virus (CaMV) 35S promoter and the nopaline synthase (NOS) transcriptions! terminator, A kanamyein resistance gene was included to provide a selectable'marker. pGS111 was transferred to Agrobacienum tumefaciens strain pTiTT37ASE using triparentai mating as described (Rogers ef at 1987, supra; Unkefer et aL, U.S. Patent No, 6,555,500). Nicotiana tabacum cv. Xanthi plants were transformed with pGS111 transformed Agrobacteria using the leaf disc transformation system of Horsch et. ai, (Horsch et 81,1995, Science 227:1229-1231). Transformants were selected and regenerated on MS medium containing 1G0pg/m! kanamyein. Shoots were rooted on the same medtom (with kanamyein, absent hormones) and transferred to potting soil:periite:vermiculite (3:1:1), grown to maturity, and allowed to seif. Seeds were harvested from this To generation, and subsequence generations produced by selling and continuing selection with ksnamydn, The best growth performers were used to yield a T3 for crossing with the best performing GPT over-expressing tines identified as described in Example 3. A photograph of the GS1 transgenic plant compared to a wild type control plant is shown in FiG. 2 (together with GPT transgenic tobacco plant, see Example 3)
EXAMPLE 6: GENERATION OF TRANSGENIC TOMATO PLANTS CARRYING ALFALFA GS1 TRANSGENE:
Transgenic Lycopersicon escuientum (Micro-Tom Tomato) plants carrying the Alfalfa G81 transgene were generated using the vector described in Example 5 and a transformation protocol essentially as described (Sun et ai., 2006. Plant Cel! Physiol 46(3} 426-31). T9 transgenic tomato plants were generated and grown to maturity, initial growth characteristic data of the GPT transgenic tomato plants is presented in Table III The transgenic plants showed significant enhancement of growth rate, flowering, and seed yield in relation to wild type control plants. In addition, the transgenic plants developed multiple main stems, whereas wild type plants developed with a single main stem, A photograph of a GS1 transgenic tomato plant compared to a wild type plant is presented in FIG, 3 (together with GPT transgenic tomato plant, see Example 4).
TABLE HI
EXAMPLE 7: GENERATION OF DOUBLE TRANSGENIC TOBACCO PLANTS CARRYING GS1 AND GPT TRANSGENES:
In an effort to determine whether the combination of GS1 and GPT transgenes in a single transgenic plant might improve the extent to which growth and other agronomic characteristics may be enhanced, a number of sexual crosses between high producing iines of the single transgene (GS1 or GPT) transgenic plants were carried out. The results obtained are dramatic, as these crosses repeatedly generated progeny plants having surprising and heretofore unknown increases in growth rates, biomass yield, and seed production.
Materials and Methods:
Ssngie-transgene, transgenic tobacco plants overexpressing GPT or GS1 were generated as described in Examples 3 and 4, respectively. Several of fastest growing Tj generation GPT transgenic plant lines were crossed with the fastest growing T3 generation QS1 transgenic plant lines using reciprocal crosses. The progeny were then selected on kanamycin containing M&amp;S media as described in Example 3, and their growth, flowering and seed yields examined.
Tissue extractions for GPT and GS activities: GPT activity was extracted from fresh plant tissue after grinding in cold 100 mM Tris-HCt, pH 7,8, containing 1 mm ethytenediaminetetraacetic, 200 mM pyridoxa! phosphate and 8 mM mercaptoethanol in a ratio of 3 mi per gram of tissue. The extract was clarified by centrifugation and used in the assay. GS activity was extracted from fresh plant tissue after grinding in cold 50 mM Imidazole, pH 7.5 containing 10 mM Mg€i2s and 12.5 mM mercaptoethanoi in a ratio of 3 mi per gram of tissue. The extract was clarified by centrifugation and used in the assay. GPT activity was assayed as described in Calderon and Mora, 1985, Journal Bacteriology 161:807-809, GS activity was measured as described in Shapiro and Stadimahn, 1970, Methods in Enzymology Ί7Α: 910-922. Both assays involve an incubation with substrates and cofactor at the proper pH. Detection was by HPLC.
BesyJl;
The results are presented in two ways. First, specific growth characteristics are tabulated in Tabies iV.A and iV.B (biomass, seed yields, growth rate, GS activity, GPT activity, 2-oxoglutaramate activity, etc). Second, photographs of progeny plants and their leaves are shown in comparison to singie-transgene and wild type plants and leaves are presented in FIG, 5 and FIG. 6, which show much larger whole plants, larger leaves, and earlier and/or more abundant flowering in comparison to the parentai singie-transgene plants and wild type control plants.
Referring to Table IV.A, double-iransgene progeny plants form these crosses showed tremendous increases total biomass (fresh weight), with fresh weights ranging from 45-89 grams per individual progeny plant, compared to a range of only 19-24 grams per individual wild type piant, representing on average, about a two- to three-fold increase over wild type plants, and representing at the high end, an astounding four-fold increase in biomass over wild type plants. Taking the 24 individual doubie-transgene progeny plants evaluated, the average individual plant biomass was about 2.75 times that of the average wild type control plant Four of the progeny lines showed approximately 2,5 fold greater average per plant fresh weights, while two lines showed over three-fold greater fresh weights in comparison to wild type plants. in comparison to the singie-transgene parental lines, the double-transgene progeny plants also showed far more than an additive growth enhancement. Whereas GPT singie-transgene lines show as much as about a 50% increase over wild type biomass, and GS1 singie-transgene lines as much as a 66% increase, progeny plants averaged almost a 200% increase over wild type plants.
Similarly, the double transgene progeny plants flowered earlier and more prollfically than either the wild type or single transgene parental lines, and produced a fer greater number of seed pods as well as total number of seeds per plant. Referring again to Table IV.A, on average, the doubfe-transgene progeny produced over twice the number of seed pods produced by wild type plants, with two of the high producer plants generating over three times the number of seed pods compared to wild type. Total seed yield in progeny plants, measured on a per plant weight basis, ranged from about double to nearly quadruple the number produced in wild type plants. S-112,983
TABLE IV.A
59 60
Table IV.B shows growth rate, biomass and yield, and biochemical characteristics of Line XX (Line 3 further selfed) compared to the single transgene line expressing GS1 and wild type control tobacco. All parameters are greatly increased in the double transgenic plant (Line XX). Notably, 2-oxoglutaramate activity was almost 17-fold higher, and seed yield and foliar biomass was three-fold higher, in Line XX plants versus control plants.
TABLE IV.B
NM Not Measured 1 EXAMPLE 8: GENERATION OF DOUBLE TRANSGENIC PEPPER PLANTS CARRYING GS1 AND GPT TRANSGENES:
In this example, Big Jim chili pepper plants (New Mexico varietal) were transformed with the Arabidopsis GPT full length coding sequence of SEQ ID NO: 1 under the control of the CMV 35S promoter, and the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter, using Agrobacterium-mediated transfer to seed pods. After 3 days, seeds were harvested and used to generate TO plants and screened for transformants. The resulting double-transgenic plants showed higher pod yields, faster growth rates, and greater biomass yields in comparison to the control plants.
Materials and Methods:
Solanaceae Capiskum Pepper plants (“Big Jim" varietal) were transformed with the Arabidopsis GPT full length coding sequence of SEG ID MO: 1 under the control of the CMV 35S promoter within the expression vector pMON (see Example 3), and the Arabidopsis GS1 coding sequence of SEG ID NO; 8 under the control of the RuBisCo promoter within the expression vector pCambia 1201 (Tomato rubisco rbcS3C promoter: Kyozirtka et ah, 1993, Plant Physiol. 103: 991-1000; SEG ID NO: 22; vector construct of SEG ID NO: 6), using Agrobacterium-mediaied transfer to seed pods.
For this and all subsequent examples, the Gambia 1201 or 1305.1 vectors were constructed according to standard cloning methods (Sambrook et al, 1989, supra, Saiki et al., 1988, Science 239: 487-491). The vector is supplied with a 35S CaMV promoter; that promoter was replaced with RcbS-3C promoter from tomato to control the expression of the target gene. The Gambia 1201 vectors contain bacterial chlorophenicoi and plant hygromycin resistance selectable marker genes. The Gambia 1305.1 vectors contain bacterial chlorophenicoi and hygromycin resistance selectable marker genes.
The transgene expression vectors pMON (GPT transgene) and pCambia 1201 (GS transgene) were transferred to separate Agrobacterium tumefaciens strain LBA44G4 cultures using a standard electroporation method (McCormac et al., 1998, Molecular Biotechnology 9:155-159). Transformed Agrobacterium were selected on media containing 50 pg/mi of either streptomycin for pMON constructs or chloroamphenicoi for the Gambia constructs. Transformed Agrobacterium cells were grown in LB culture media containing 25 ug/ml of antibiotic for 36 hours. At the end of the 36 hr growth period cells were collected by centrifugation and cells from each transformation were resuspended in 100 mi LB broth without antibiotic.
Pepper plants were then transformed with a mixture of the resulting Agrobacterium cell suspensions using a transformation protocol in which the Agrobacterium Is injected directly into the seed cavity of developing pods. Briefly, developing pods were injected with the 200 ml mixture in order to inoculate immature seeds with the Agrobacteria essentially as described (Wang and Waterhouse, 1997, Plant Mol. Biol. Reporter 15: 209-215). in order to induce Agrobacteria virulence and improve transformation efficiencies, 10 pg/mi acetosyringonone was added to the Agrobacteria cultures prior to pod inoculations (see, Sheikhoteslam and Weeks, 1986, Plant Mol. Biol. 8: 291-298).
Using a syringe, pods were injected with a liberal quantity of the Agrobacterium vector mixture, and left to incubate for about 3 days. Seeds were then harvested and germinated, and developing plants observed for phenotypic characteristics including growth and antibiotic resistance. Plants carrying the transgenes were green, whereas untransformed plants showed signs of chlorosis in leaf tips. Vigorous growing transformants were grown and compared to wild type pepper plants grown under identical conditions.
Results:
The results are presented in FIG. 7 and Table V. FIG. 7 shows a photograph of a GPT+GS double transgenic pepper plant compared to a control plant grown for the same time under identical conditions. This photograph shows tremendous pepper yield in the transgenic line compared to the control plant
Table V presents biomass yield and GS activity, as well as transgene genotyping, in the transgenic fines compared to the wild type control. Referring to Table V, doubletransgene progeny plants showed tremendous increases total biomass (fresh weight), with fresh weights, ranging from 393 - 862 grams per individual transgenic plant, compared to an average of 328 grams per wild type plant. Transgenic line AS produced more than twice the total biomass of the controls. Moreover, pepper yields in the transgenic lines were greatly improved over wild type plants, and were 50% greater than control plants (on average). Notably, one of the transgene lines produced twice as many peppers as the control plant average.
TABLE V: TRANSGENIC PEPPER GROWTH/BIOM ASS AND REPRODUCTION
FWt Fresh Weight; DWt Dry Weight EXAMPLE 9: GENERATION OF DOUBLE TRANSGENIC BEAN PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES:
In this example, yellow wax bean plants (Phaseokm vulgaris) were transformed with the Arabidopsis GPT full length coding sequence of SEQ ID NO: 1 under the control of the GMV 35S promoter within the expression vector pCambia 1201, and the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201, using Agrobacterium-mediated transfer into flowers.
Materials and Methods:
The transgene expression vectors pCambia 1201-GFT (vector construct of SEQ ID NO: 27) and pCambia 1201-GS (vector construct of SEQ ID NO: 6) were transferred to separate Agrobacterium tumefaciens strain LBA44Q4 cultures using a standard electroporation method (McCormac et a!., 1998, Molecular Biotechnology 9:155-159). Transformed Agrobacierium were selected on media containing 50 pg/ml of chloroamphenicol. Transformed Agrobacterium cells were grown in LB culture media containing 25 pg/ml of antibiotic for 36 hours. At the end of the 36 hr growth period ceils were collected by centrifugation and cells from each transformation were resuspended in 100 ml LB broth without antibiotic.
Bean plants were then transformed with a mixture of the resulting Agrobacterlum cel! suspensions using a transformation protocol in which the Agrobacteria is injected directly into the flower structure (Yasseem, 2009, Plant Mol. Biol. Reporter 27: 20-28). in order to induce Agrobacteria virulence and improve transformation efficiencies, TO pg/ml acetosyrlngonone was added to the Agrobacteria cultures prior to flower inoculation. Briefly, once flowers bloomed, the outer structure encapsulating the reproductive organs was gently opened with forceps In order to permit the introduction of the Agrobacieria mixture, which was added to the flower structure sufficient to flood the anthers.
Plants were grown untii bean pods developed, and seeds were harvested and used to generate transgenic plants. Transgenic plants were then grown together with control bean plants under identical conditions, photographed and phenotypically characterized. Growth rates were measured for both transgenic and control plants, in this and al! examples, Glutamine synthetase (GS) activity was assayed according to the methods in Shapiro and Stadtmann, 1970, Methods in Enzymology 17A: 910-922; and, Glutamine phenylpyruvate transaminase (GPT) activity was assayed according to the methods in Calderon et al., 1985, J. Bacteriol. 161: 807-809. See details in Example 7:, Methods, supra,
Results:
The results are presented In FIG. 8, FIG. 9 and Table VI. FIG. 8 shows GPT+GS transgenic bean Sine A growth rate data relative to control plants, including plant heights on various days into cultivation, as well as numbers· of flower buds, flowers, and bean pods. These data show that the GPT+GS double transgenic bean plants outgrew their counterpart control plants. The transgenic plants grew taller, flowered earlier and produced more flower buds and flowers, and developed bean pods and produced more bean pods that the wild type control plants.
TABLE VI; TRANSGENIC BEANS LINE A
WT Wiidiype; FWt Fresh Weight; NM Not Measured
Table VI presents bean pod yield, GPT and GS activity, as well as antibiotic resistance status, in the transgenic lines compared to the wild type contra! (average of several robust control plants; control plants that did not grow well were excluded from the analyses). Referring to Table VI, double-transgene progeny plants showed substantial bean pod biomass Increases (fresh pod weight) in comparison to the control plants, with bean pod biomass yields consistently above 200 grams per individual transgenic plant, compared to an average of 127 grams per wild type plant, representing an over 60% increase in pod yield in the double iransgene lines relative to control piant(S).
Lastly, FIG. 9 shows a photograph of a GPT+GS double transgenic bean plant compared to a control plant grown for the same time under identical conditions, showing increased growth in the transgenic plant. EXAMPLE 10: GENERATION OF DOUBLE TRANSGENIC BEAN PLANTS CARRYING ARA8IDOPSIS GS1 AND GRAPE GPT TRANSGENES:
In this example, yellow wax bean plants (PhaseoSus vulgaris) were transformed with the Grape GPT full length coding sequence of SEQ ID NO: S under the control of the RuBisCo promoter within the expression vector pGambia 1305.1, and the Arabidopsis GS1 coding sequence of SEQ ID NO; 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201, using Agrobacterium-mediated transfer into developing pods.
Materials and Methods:
The transgene expression vectors pCambia 1201-GPT(grape} (vector construct of SEQ ID NO: 8) and pCambia 1201-GS (vector construct of SEQ ID NO: 6} were transferred to separate Agrohacterium tumefaciens strain LBA4404 cultures using a standard electroporation method (McGormac et ai., 1998, Molecular Biotechnology 9:155-159). Transformed Agrobacierium were selected on media containing 50 pg/ml of chloroamphenicol. Transformed Agrobacterium ceils were grown in LB culture media containing 25 pg/ml of antibiotic for 36 hours. At the end of the 36 hr growth period cells were collected by centrifugation and cells from each transformation were resuspended in 100 ml LB broth without antibiotic.
Bean plants were then transformed with a mixture of the resulting Agrobacterium cell suspensions using a transformation protocol in which the Agrobactoria is injected directly into the flower structure. In order to induce Agrobacteria virulence and improve transformation efficiencies, 1G pg/mi aGetosyringonone was added to the
Agrobacteria cultures prior to flower inoculation. Briefly, once flowers bloomed, the outer structure encapsulating the reproductive organs was gently opened with forceps in order to permit the introduction of the Agrobacteria mixture, which was added to the flower structure sufficient to flood the anthers.
Plants were grown until bean pods developed, and seeds were harvested and used to generate transgenic piants. Transgenic plants were then grown together with control bean piants under identical conditions, photographed and phenotypicaily characterized. Growth rates were measured for both transgenic and control plants.
Results:
The results are presented in FIG. 10, FIG. 11 and Table VI!. FIG. 10 shows GPT+GS transgenic bean line G growth rate data relative to control plants,.specifically including numbers of flower buds, flowers, and bean pods. These data show that the GPT+GS double transgenic bean plants outgrew their counterpart control plants. Notably, the transgenic plants produced substantially more bean pods that the wild type control plants.
TABLE VII: TRANSGENIC BEANS LINE G: POD YIELDS
WT Wiidtype, FWt Fresh Weight; NM Not Measured
Table VII presents bean pod yield and antibiotic resistance status, in the transgenic lines compared to the wild type control (average of several robust control plants; control plants that did not grow well were excluded from the analyses). Referring to Table VII, double-transgene progeny piants showed substantial bean pod biomass increases {fresh pod weight) in comparison to the control plants, with bean pod biomass'yields of 200.5 (line G1) and 178 grams (line G2) per individual transgenic plant, compared to an average of 158 grams per individual wild type plant, representing approximately a 27% increase In pod yield in the double transgene lines relative to control plants,
Lastly, FIG. 11 shows a photograph of a GPT+GS double transgenic bean piant compared to a control plant grown for the same time under identical conditions. The transgenic plant shows substantiaily increased size and biomass, larger leaves and a more mature flowering compared to the control plant, EXAMPLE 11: GENERATION OF DOUBLE TRANSGENIC COWPEA PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES: in this example, common Gowpea plants were transformed with the Arabidopsis GPT full length coding sequence of SEG ID WO: 1 under the control of the CMV 35S promoter within the expression vector pMGN, and the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201, using Agrobacterium-mediated transfer into flowers. Materials and methods were as in Example 9, supra.
Results:
The results are presented In FIGS, 12 and 13, and Table VI, FIG, 12 shows relative growth rates for the GPT+GS transgenic Cowpea line A and wild type control Gowpea at several intervals during cultivation, including (FIG. 12A) height and longest leaf measurements, (FIG. 12B) trifolate leafs and flower buds, and (FIG. 12C) flowers, flower buds and pea pods. These data show that the GPT+GS double transgenic Cowpea plants outgrew their counterpart control plants, The transgenic plants grew faster and taller, had longer leaves, and set flowers and pods sooner than wild type control plants.
TABLE Viii: TRANSGENIC COWPEA LINE A
VVT Wildtype; FWt Fresh Weight; NM Not Measured
Table VIII presents pea pod yield, GPT and GS activity, as well as antibiotic resistance status, in the transgenic lines compared to the wild type control (average of several robust control plants' control plants that did not grow well were excluded from the analyses). Referring to Table VIII, double-transgene progeny plants showed substantial pea pod biomass increases (fresh pod weight) in comparison to the control plants, with average transgenic plant pea pod biomass yields nearly 52% greater than the yields measured in control piant(s).
Lastly, FIG, 13 shows a photograph of a GPT+G3 double transgenic bean plant compared to a control plant grown for the same time under identical conditions, showing increased biomass and pod yield in the transgenic piant relative to the wild type control plant. EXAMPLE 12: GENERATION OF DOUBLE TRANSGENIC COWPEA PLANTS CARRYING ARABIDOPSIS GS1 AND GRAPE GPT TRANSGENES: in this example, common Cowpea plants were transformed with the Grape GPT full length coding sequence of SEQ ID NO: 8 under the control of the RuBisGo promoter within the expression vector pCambia 1305,1 (vector construct of SEQ ID NO: 8), and the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201 (vector construct of SEQ ID NO: 6), using Agrobactehum-mediaied transfer into flowers. Materials and methods were as in Example 11, supra.
Results:
The results are presented in FIGS. 14 and 15, and Table IX,. FIG. 14 shows relative growth rates for the GPT+GS transgenic Cowpea line G and wild type control Cowpea. These data show that the transgenic plants are consistently higher (FIG. 14A), produce substantially more flowers, flower buds and pea pods (FIG. 14B), and develop trifoiates and leaf buds faster (FIG. 14C),
TABLE IX: TRANSGENIC COWPEA LINE G
WT Wildtype; FWt Fresh WeighpNM Not Measured
Table IX presents pea pod yield, OPT and GS activity, as well as antibiotic resistance status, in the transgenic lines compared to the wild type control (average of several robust control plants; control plants that did not grow well were excluded from the analyses). Referring to Table IX, double-transgene progeny plants showed substantial pea pod biomass increases (fresh pod weight) in comparison to the control plants, with average pea pod biomass yields 70% greater in the transgenic plants compared to control plant(s).
Lastly, FIG. 15 shows a photograph of a GPT+GS double transgenic pea plant compared to a control plant grown for the same time under identical conditions, showing increased height, biomass and leaf size in the transgenic plant relative to the wild type control plant EXAMPLE 13: GENERATION OF DOUBLE TRANSGENIC ALFALFA PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES: in this example, Alfalfa plants (Medicago sativa, var Ladak) were transformed with the Arabidopsis GPT full length coding sequence of SEQ ID NO: 1 under the control of the CMV 35S promoter within the expression vector pMON318 (see Example 3, supra), and the Arabidopsis GS1 coding sequence of SEQ ID NO: 8 under the control of the RuBisGo promoter within the expression vector pGambia 1201 (vector construct of SEQ ID NO: 6), using Agrobacterium-mediaied transfer into seedling plants. Agrobacterium vectors and mixtures were prepared for seedling inoculations as described in Example 11, supra.
Seedling Inoculations:
When Alfalfa seedlings were still less than about 1/2 inch tail, they were soaked in paper toweling that had been flooded with the Agrobacteria mixture containing both transgene constructs. The seedlings were left in the paper toweling for two to three days, removed and then planted in potting soil:, Resulting TO .and: control plants were then grown for the first 30 days in a growth chamber, thereafter cultivated in a greenhouse, and then harvested 42 days after sprouting. At this point, only the transgenic Alfalfa line displayed flowers, as the wild type plants only displayed immature flower buds. The plants were characterized as to flowering status and total biomass.
Results;
The results are presented in Table X. The data shows that the transgenic Alfalfa plants grew faster, flowered sooner, and yielded on average about a 62% biomass increase relative to the control plants.
TABLE X: TRANSGENIC ALFALFA VS. CONTROL
EXAMPLE 14: GENERATION OF DOUBLE TRANSGENIC CANTALOUPE PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES:
In this example, Cantaloupe plants (Cucumts melo var common} were transformed with the Arabidopsis GPT hill length coding sequence of SEQ ID NO: 1 under the control of the CMV 35S promoter within the expression vector pMON316 (see Example 3, supra), and the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201 (vector construct of SEQ ID NO: 6), using Agrobacterium-mediated transfer via injection into developing melons. Agrobacterium vectors and mixtures were prepared for intra-melon inoculations as described in Example 8, supra. Inoculations into developing melons were carried out essentially as described in Example 8. The plants were characterized as to flowering status and total biomass relative to control melon plants grown under identical conditions.
The results are presented in FIG. 16 and Table XI. Referring to Table X!, the transgenic plants showed substantia! foliar plant biomass increases in comparison to the control plants, with an average increase in biomass of 63%, Moreover, a tremendous increase in flower and flower bud yields was observed in ali five transgenic lines. Control plants displayed no flowers and only 5 buds at sacrifice, on average. In sharp contrast, the transgenic plants displayed between 2 and 5 flowers per plant, and between 21 and 30 flower buds, per plant, indicating a substantially higher growth rate and flower yield, increased flower yield would be expected to translate Into correspondingly higher melon yields in the transgenic plants. Referring to FIG. 16 (a photograph comparing transgenic Cantaloupe plants to control Cantaloupe plants), the transgenic Cantaloupe plants show dramatically increased height, overall biomass and flowering status.relative to the control plants.
TABLE XI: TRANGENIC CANTALOUPE VERSUS CONTROL
FWt Fresh Weight EXAMPLE 15: GENERATION OF DOUBLE TRANSGENIC PUMPKIN PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES: in this example, common Pumpkin plants (Cucurbita maxima} were transformed with the Arabidopsis GPT full length coding sequence of SEQ ID NO: 1 under the control of the CMV 35S promoter within the expression vector pMON316 (see Example 3, supra), and the Arabkfopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201 (vector construct of SEQ SD NO: 6),. using Agrobacterium-mediated transfer via injection into developing pumpkins, essentially as described in Example 14, supra. The transgenic and control pumpkin plants were grown under identical conditions until the emergence of flower buds in the control plants, then aii plants were characterized as to flowering status and totai biomass.
The results are presented in FIG. 17 and Table X!l. Referring to Table XII, the transgenic plants showed substantial foliar plant biomass increases in comparison to the control plants, with an increase in average biomass yield of 67% over control plants. Moreover, an increase in flower bud yields was observed in four of'the five transgenic lines in comparison to control Control plants displayed only 4 buds at sacrifice (average). In contrast, four transgenic plant lines displayed between 8 and 15 flowers buds per plant, representing a two- to nearly four-fold yield increase.
TABLE XU: TRANGENIC PUMPKIN VERSUS CONTROL
FWt Fresh Weight;
Referring to FIG. 17 (a photograph comparing transgenic pumpkin plants to control plants), the transgenic pumpkin plants show substantially increased plant size, overall biomass and leaf sizes and numbers relative to the control plants. EXAMPLE 16: GENERATION OF DOUBLE TRANSGENIC ARABIDOPSIS PLANTS CARRYING ARABIDOPSIS GS1 AND GPT TRANSGENES:
In this example, Arabidopsis thaflana plants were transformed with the truncated Arabidopsis GPT coding sequence of SEQ ID NO: 18 under the control of the GMV 35S promoter within the expression vector pMON316 {see Example 3, supra), and transgenic plants thereafter transformed with the Arabidopsis GS1 coding sequence of SEQ ID NO: 6 under the control of the RuBIsCo promoter within the expression vector pCambia 1201 (vector construct of SEQ ID NO: 6), using Agrobacterium-mediated “floral dip” transfer as described (Harrison et al„ 2006, Plant Methods 2:19-23: Clough and Bent, 1998, Plant j. 16:735-743). Agrobacterium vectors pMON316 carrying GPT and pCambia 1201 carrying GS1 were prepared as described in Examples 3 and 11, respectively.
Transformation of two different cultures of Agrobacterium with either a pMon 316 + Arabidopsis GTP construct or with a Carnbia 1201 + Arabidopsis GS construct was done by electroporation using the method of Weigel and Giazebrook 2002. The transformed Agrobacterium were then grown under antibiotic selection, collected by centrifugation resuspended in LB broth with antibiotic and used in the floral dip of Arabidopsis inflorescence. Floral dipped Arabidopsis plants were taken to maturity and self-fertilized and seeds were collected. Seeds from twice dipped plants were first geminated on a media containing 20ug/ml of kanamycin and by following regular selection procedures surviving seedlings were transferred to media containing 20 ug of hygromycin, Plants (3) surviving the selection process on both antibiotics were self-fertilized and seeds were collected. Seeds from the T1 generation were germinated on MS media containing 20 ug/ml of hygromycin and surviving seedlings were taken to maturity, self-fertilized and seeds collected. This seed population the T2 generation was then used for subsequent growth studies.
The results are presented in FIG. 18 and Table XSI1 Referring to Table XIII, which shows data from 6 wild type and 6 transgenic Arabidopsis plants (averaged), the transgenic plants displayed increased levels of both GPT and GS activity. GPT activity was over twenty-fold higher than the control plants. Moreover, the transgenic plant fresh foliar weight average was well over four-fold that of the wild type control plant average. A photograph of young transgene Arabidopsis plants in comparison to wild type control Arabidopsis plants grown under identical conditions is shown in FIG. 18, and reveals a consistent and very significant increase in transgenic plants relative to the control plants,
TABLE XII!; TRANSGENIC ARABIDOPSIS VERSUS CONTROL
EXAMPLE 17; GENERATION OF TRANSGENIC TOMATO PLANTS CARRYING ARABIDOPSIS OPT AND GS1 TRANSGENES:
In this example, tomato plants (Solatium lympersicon, “money Maker” variety) were transformed with the Arabidopsis GPT full length coding sequence of SEG !D NO; 1 under the control of the CMV 35S promoter within the expression vector pMON316 (see Example 3, supra), and the Arabidopsis GS1 coding sequence of SEG ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201 (vector construct of SEG ID NO: 6), Single transgene (GPT) transgenic tomato plants: were generated and grown to flowering essentially as described in Example 4. The Arabidopsis GS1 transgene was then introduced Into the singie-transgene TO plants using Agrobacterium-mediated transfer via injection directly into flowers (as described in Example 8). The transgenic and control tomato plants were grown under identical conditions and characterized as to growth phenotype characteristics. Resulting TO double-transgene plants were then grown to maturity, photographed along with control tomato plants, and phenotypicaliy characterized.
The results are presented in FIG. 19 and in Table IXX. Referring to Table IXX, double-transgene tomato plants showed substantial foliar plant biomass increases in comparison to the control plants, with an increase In average biomass yield of 45% over control. Moreover, as much as a 70% increase in tomato fruit yield was observed in the transgenic lines compared to control plants (e.g„ 51 tomatoes harvested from Line 4G, versus and average of approximately 30 tomatoes from control plants). A much higher level of GPT activity was observed in the transgenic plants (e.g., line 4G displaying an approximately 32-fofd higher GPT activity in comparison to the average GPT activity measured in control plants). GS activity was also higher in the transgenic plants relative to control plants (almost double In Line 40),
With respect to growth phenotype, and referring to FIG. 19, the transgenic tomato plants displayed substantially larger leaves compared to control plants (FIG 19A). In addition, it can be seen that the transgenic tomato plants were substantially larger, taller and of a greater overall biomass (see FIG. 198).
TABLE IXX: TRANSGENIC TOMATO GROWTH AND REPRODUCTION
EXAMPLE 18: GENERATION OF TRANSGENIC CAMILENA PLANTS CARRYING ARABIDOPSIS OPT AND GS1 TRANSGENES:
In this example, Camelina plants (Cameiina sativa, Var MT 303) were transformed with the Arabidopsis GPT full length coding sequence of SEG ID NO: 1 under the control of the RuBisCo promoter within the expression vector pCambia 1201, and the Arabidopsis GS1 coding sequence of SEG ID NO: 6 under the control of the RuBisCo promoter within the expression vector pCambia 1201, using Agrobacterium-mediated transfer into germinating seeds according to the method described in Ghee, et a!,, 1989, Plant Physiol. 91: 1212-1218. Agrobacterium vectors and mixtures were prepared for seed inoculations as described in Example 11, supra.
Transgenic and control Camelina plants were grown under identical conditions (30 days in a growth chamber and then moved to greenhouse cultivation) for 39 days, and characterized as to biomass, growth characteristics and flowering stage.
The results are presented in Table XX and FIG. 20. Referring to Table XX, it can be seen that total biomass in the transgenic plants was, on average, almost double control plant biomass. Canopy diameter was also significantly Improved in the transgenic plants. FIG. 20 shows a photograph of transgenic Cameiina compared to control. The transgenic plant is noticeably larger and displays more advanced flowering status.
TABLE XX: TRANSGENIC CAMELINA VERSUS CONTROL
EXAMPLE Ί&amp; ACTIVITY OF BARLEY OPT TRANSGENE IN PLANTA
In this example, the putative coding sequence for Barley GPT was Isolated and expressed from a transgene construct using an in plants transient expression assay. Biologically active recombinant Barley GPT was produced, and catalyzed the increased synthesis of 2- oxoglutaramate, as confirmed by HPLC,
The Barley (Hordeum vulgare) GPT coding sequence was determined and synthesized. The DNA sequence of the Barley GPT coding sequence used in this example is provided in SEQ ID NO: 14, and the encoded GPT protein amino acid sequence is presented in SEQ ID NO: 15,
The coding sequence for Barley GPT was inserted Into the 1305.1 Gambia vector, and transferred to Agrohacterium tumefaciens strain LBA404 using a standard electroporation method (McCormac et al., 1998, Molecular Biotechnology 9:155-159), followed by plating on L8 plates containing hygromycln (50 micro gm / mi). Antibiotic resistant colonies of Agrobaeterium were selected for analysis.
The transient tobacco leaf expression assay consisted of injecting a suspension of transformed Agrobacterium (1.5-2.0 0D 650) into rapidly growing tobacco leaves, intraderma! injections were made in a grid across the leaf surface to assure that a significant amount of the leaf surface would be exposed to the Agrobacterium. The plant was then allowed to grow for 3-5 days when the tissue was extracted as described for all other tissue extractions and the GPT activity measured. GPT activity in the inoculated leaf tissue (1217 nanomoies/gFWt/h) was three-fold the level measured In the control plant leaf tissue (407 nanomoies/gFWt/h), indicating that the Hordeum GPT construct can direct the expression of functional GPT in a transgenic piant
EXAMPLE 20: ISOLATION AND EXPRESSION OF RECOMBINANT RICE OPT GENE CODING SEQUENCE AND ANALYSIS OF BIOLOGICAL ACTIVITY
In this example, the putative coding sequence for rice GPT was isolated and expressed in £. coli Biologically active recombinant rice GPT was produced, and catalyzed the increased synthesis of 2- oxoglutaramate, as confirmed by HPLC.
Materials and Methods:
Rice GPT coding sequence and expression in £. coli:
The rice (Oryza satMa) GPT coding sequence was determined and synthesized, inserted into a PET28 vector, and expressed in £ coli Briefly, E coil cells were transformed with the expression vector and transformants grown overnight in LB broth diluted and grown to CD 0.4, expression induced with isopropyl-B-D-thiogalactoside (0.4 micromoiar), grown for 3 hr and harvested. A total of 25 X 106 cells were then assayed for biological activity using the NMR assay, below. Untransformed, wild type E. coli cells were assayed as a control. An additional control used E coli cells transformed with an empty vector.
The DNA sequence of the rice GPT coding sequence used in this example is provided in SEG ID NO: 10, and the encoded GPT protein amino add sequence is presented in SEQ ID NO: 11. HPLC Assay for 2-oxodlutaramate: HPLC was used to determine 2-oxoglutafamate production in GPT-overexpressing E coli cells, following a modification of Calderon et a!., 1985, J Bacterio! 161.(2): 807-809. Briefly, a modified extraction buffer consisting of 25 mM Tris-HC! pH 8.5, 1 mM EDTA, 20 μ.Μ Pyndoxal phosphate, 10 mM Cysteine, and ~1.5% (v/v) Mercaptoethanol was used. Samples (lysate from E coli cells, 25 X 106 cells) were added to the extraction buffer at approximately a 1/3 ratio (w/v), incubated for 30 minutes at 37*C, and stopped with 200μ1 of 20% TCA. After about 5 minutes, the assay mixture is centrifuged and the supernatant used to quantify 2-oxoglutaramate by HPLC, using an SQN-3G0 7.8mm ID X 30 cm L column, with a mobile phase in 0.01 N h2S04, a flow rate of approximately 0.2 mi/min, at 40'"G. Injection volume is approximately 20 ul, and retention time between about 38 and 39 minutes. Detection is achieved with 21 Own UV light. NMR analysis comparison with authentic 2-oxogiutaramate was used to establish that the Arabidopisis full length sequence expresses a GPT with 2-oxoglutaramate synthesis activity. Briefly, authentic 2-oxogSutarmaie (structure confirmed with NMR) made by chemical synthesis to validate the HPLC assay, above, by confirming that the product of the assay (molecule synthesized in response to the expressed GPT) and the authentic 2-oxoglutaramate elute at the same retention time. In addition, when mixed together the assay product and the authentic compound elute as a single peak. Furthermore, the validation of the HPLC assay also included monitoring the disappearance·.of the substrate glutamine and showing that there was a 1:1 molar stoechiometry between glutamine consumed to 2-oxogiutaramte produced. The assay procedure always included two controls, one without the enzyme added and one without the glutamine added. The first shows that the production of the 2-oxoglutaramate was dependent upon having the enzyme present, and the second shows that the production of the 2-oxoglutaramate was dependent upon the substrate glutamine.
Results:
Expression of the rice GPT coding sequence of SEQ ID NO: 10 resulted in the over-expression of recombinant GPT protein having 2-oxoglutaramate synthesis-catalyzing bioactivity. Specifically, 1,72 nanomoles of 2-oxoglutaramate activity was observed in the E. cofi ceils overexpressing the recombinant rice GPT, compared to only 0,02 nanomoles of 2-oxoglutaramate activity in control E. coil cells, an 86-fold activity level increase over control.
EXAMPLE 21: ISOLATION AND EXPRESSION OF RECOMBINANT SOYBEAN OPT GENE CODING SEQUENCE AND ANALYSIS OF BIOLOGICAL ACTIVITY
In this example, the putative coding sequence for soybean GPT was isolated and expressed in E. coii. Biologically active recombinant soybean GPT was produced, and catalyzed the increased synthesis of 2- oxogiutaramate, as confirmed by HPLC.
Materials and Methods:
Soybean GPT coding sequence and expression in £. coii:
The soybean (Glycine max) GPT coding sequence was determined and synthesized, inserted into a PET28 vector, and expressed in E. coii. Briefly, E. coii cells were transformed with the expression vector and transformants grown overnight in LB broth diluted and grown to OD 0.4, expression induced with isopropyi-B-D-thiogalactoside (0.4 micromolar), grown for 3 hr and harvested. A total of 25 X 106 cells were then assayed for biological activity using the NMR assay, below. Untransformed, wild type E, coii ceils were assayed as a control. An additional control used E coii cells transformed with an empty vector.
The DMA sequence of the soybean GPT coding sequence used in this example is provided in SEG ID NO: 12, and the encoded GPT protein amino acid sequence is presented In SEG ID NO: 13, HPLC Assay for 2-oxogiutaramate: HPLC was used to determine 2-Qxogiutaramate production in GPT-overexpressing E coii ceils, as described in Example 20, supra.
Results:
Expression of the soybean GPT coding sequence of SEQ ID NO: 12 resulted in the over-expression of recombinant GPT protein having 2~oxoglutaramate synthesis-catalyzing bioactivlty, Specifically, 319 nanomoles of 2-oxogiutaramate activity was observed in the £. coif cells overexpressing the recombinant soybean GPT, compared to only 0.02 nanomoles of 2-oxogiutaramate activity in control E, coil ceils, a nearly 1,600-fold activity level increase over control.
EXAMPLE 22: ISOLATION AND EXPRESSION OF RECOMBINANT ZEBRA FISH GPT GENE CODING SEQUENCE AND ANALYSIS OF BIOLOGICAL ACTIVITY in this example, the putative coding sequence for Zebra fish GPT was isolated and expressed in £. coil. Biologically active recombinant Zebra fish GPT was produced, and catalyzed the increased synthesis of 2- oxoglutaramate, as confirmed by NMR.
Materials and Methods:
Zebra fish GPT coding sequence and expression in £. co/i:
The Zebra fish (Danio rerio) GPT coding sequence was determined and synthesized, inserted into a PET28 vector, and expressed in £. eo//. Briefly, E. coif cells were transformed with the expression vector and transformants grown overnight in LB broth diluted and grown to OD 0.4, expression induced with tsopropyl-R-D-thiogalactoside (0.4 micromolar), grown for 3 hr and harvested. A total of 25 X 106 cells were then assayed for biological activity using the NMR assay, below. Untransformed, wild type £. coli cells were assayed as a control. An additional control used E coli cells transformed with an empty vector.
The DNA sequence of the Zebra fish GPT coding sequence used in this example is provided in SEG ID NO: 16, and the encoded GPT protein amino acid sequence is presented in SEQ ID NO: 17. HPLC Assay for 2-oxoqlutaramate: HPLC was used to determine 2-oxogiutaramate production in GPT-overexpressing E. coli ceils, as described in Example 20, supra.
Eesulte:
Expression of the Zebra fish GPT coding sequence of SEQ ID NO: 16 resuited in the over-expression of recombinant GPT protein having 2-oxogiutaramate synthesis-cataiyzing bioactivity. Specifically, 28.6 nanomoles of 2~oxoglutaramate activity was observed in the E. colt ceils overexpressing the recombinant Zebra fish GPT, compared to only 0,02 nanomoles of 2-oxogiutaramate activity in control E. colt ceils, a more than 1,400-fold activity ievel increase over control.
EXAMPLE 23: GENERATION AND EXPRESSION OF RECOMBINANT TRUNCATED ARABIDOPSIS OPT GENE CODING SEQUENCES AND ANALYSIS
OF BIOLOGICAL ACTIVITY in this example, two different truncations of the Arabidopsis GPT coding sequence were designed and expressed in E. coli, in order to evaluate the activity of GPT proteins in which the putative chloroplast signal peptide is absent or truncated. Recombinant truncated GPT proteins corresponding to the fail length Arabidopsis GPT amino acid sequence SEQ ID NO: 1, truncated to delete either the first 30 amino-terminal amino acid residues, or the first 45 amino-terminai amino acid residues, were successfully expressed and showed biological activity in catalyzing the increased synthesis of 2- oxoglutaramate, as confirmed by NMR.
Materials and Methods:
Truncated Arabidopsis GPT coding sequences and expression in E. colt:
The ONA coding sequence of a truncation of the Arabidopsis thaliana GPT coding sequence of SEQ ID NO: 1 was designed, synthesized, inserted into a PET28 vector, and expressed in E. cofi. The DMA sequence of the truncated Arabidopsis GPT coding sequence used in this example is provided in SEQ ID MO: 20 (-45 AA construct), and the corresponding truncated GPT protein amino acid sequence is provided in SEQ ID NO: 21. Briefly, E. coli cells were transformed with the expression vector and transformants grown overnight in LB broth diluted and grown to OD 0.4, expression induced with isopropyl-B-D-thiogalactoside (0.4 micromolar), grown for 3 hr and harvested. A total of 25 X 106 cells were then assayed for biological activity using HPLC as described in Example 20, Untransformed, wild type E. cofi ceils were assayed as a control. An additional control used E coli cells transformed with an empty vector.
Expression of the truncated -45 Arabidopsls GPT coding sequence of SEQ ID NO: 20 resulted in the over-expression of biologically active recombinant GPT protein (2-oxogSutaramate synthesis-catalyzing bioactivity). Specifically, 16.1 nanomoles of 2-oxoglutaramate activity was observed in the E. coli celis overexpressing the truncated -45 GPT, compared to only 0.02 nanomoles of 2-oxogiutaramate activity in control E coli ceils, a more than 800-fold activity level increase over control. For comparison, the fuil length Arabidopsls gene coding sequence expressed in the same E. cofi assay generated 2.8 nanomoles of 2-oxogfutaramate activity, or roughly less than one-fifth the activity observed from the truncated recombinant GPT protein.
EXAMPLE 24: GPT + GS TRANSGENIC TOBACCO SEED GERMINATION TOLERATES HIGH SALT CONCENTRATIONS in this example, seeds form the double transgene tobacco line XX-3 (Gross 3 in Table 4, see Example 7) were tested in a seed germination assay designed to evaluate tolerance to high salt concentrations.
Materials and Methods:
Tobacco seeds from the wild type and XX-3 populations were surfaced sterilized (5% bleach solution for δ minutes followed by a 10% ethanol wash for 3 minutes) and rinsed with sterile distilled water. The surface sterilized seeds were then spread on Murashige and Skoog media (10% agarose) without sucrose and containing either 0 or 200 mM Nad The seeds were allowed to germinate in darkness for 2 days followed by 6 days under a 16:8 photoperiod at 24C. On day eight the rate of germination was determined by measuring the percentage of seeds from the control or fransgene plants that had germinated.
Results:
The results are tabulated in Table XXI below, The rate of germination of the transgenic piant line seeds under zero salt conditions was the same as observed with wild type control plant seeds. In stark contrast, the germination rate of the transgenic plant line seeds under very high salt conditions far exceeded the rate seen in wiid type control seeds. Whereas over 81% of the transgenic piant seeds had germinated under the high salt conditions, only about 9% of the wild type control plant seeds had germinated by the same time point These data indicate that the transgenic seeds are capable of germinating very well under high salt concentrations, an important trait for plant growth in areas of increasingly high water and/or soil salinity. TABLE XXI:
TRANSGENIC TOBACCO PLANTS GERMINATE AND TOLERATE HIGH SALT
Ail publications, patents, arid patent applications cited In this specification are herein incorporated by reference as if each individual publication or patent application were specifically and "individually indicated to be incorporated by reference.
The present invention is not to be limited' in scope by the embodiments disclosed herein, which are intended as single illustrations of individual aspects of the invention, and any which are functionally equivalent are within the scope of the invention. Various modifications to the models and methods of the invention, in addition to those described herein, will become apparent to those skilled in the art from the foregoing description and teachings, and are similarly intended to fall within the scope of the invention. Such modifications or other embodiments can be practiced without departing from the true scope and spirit of the invention. TABLE GF SEQUENCES: SEQ ID MG: 1 Arabidopsis glutamine phenyipyruvate transaminase DMA coding sequence:
AT GT ACCT GGACATAAAI GOT GT GAT GAT C AAAC AGTTT AGCTT CAAAGCCT CT C TTCTCCCATT CTCTTCTAATTTCCGACAAAGCT CCGCCAAAAT CCAT CGT CCT AT CGGAGCCACCATGACCACAGTTTCGACTCAGAACGAGTCTACTCAAAAACCCGT CCAGGT G GCGAAGAGATT AGAGAAGTT CAAGACT ACT ATTTT C ACT CAAAT GAG CAT ATTGGCAGTT AAACAT GGAGCGATCAATTT AGGCCAAGGCTTT CCCAATTT C G ACGGTCCT GATTTT GTT AAAG AAGCT GCGAT CCAAGCTATTAAAGAT GGTAAAA ACCAGT ATGCTCGT GGATACGGC ATT CCT CAGCT CAACT CT GCTATAGCT GCGC GGTTTCGT GAAGATACGGGTCTTGTT GTTGAT CCT GAGAAAGAAGTTACTGTTAC AT CT GGTTGCACAGAAGCCATAGCT GCAGCT AT GTT GGGTTTAAT AAACCCT GG T GAT G AAGT CATT CT CTTT GC ACCGTTTT AT GATT CCT ATGAAGCAACACT CT CTA T GGCT GGT GCTAAAGTAAAAG G AATCACTTTAOGT CCACCGGACTTCT CCAT CC ctttggaagagcttaaagctgcggtaactaacaagactcgagccatccttatga
ACACTCCGCACAACCCGACCGGGAAGATGTTCACTAGGGAGGAGCTTGAAACC attgcatctctctgcattgaaaacgatgtgcttgtgttctcggatgaagtatacg
AT AAGCTT GCGTTT GAAAT GGAT CAC ΑΤΤΤ CT AT AGCTT CT CTT CCCGGTAT GTA TGAAAGAACTGTGACCATGAATTCCCTGGGAAAGACTTTCTCTTTAACCGGATG GAAGATCGGCTGGGCGATTGCGCCGCCTCATCTGACTTGGGGAGTTCGACAAG CACACT CTT ACCT CACATT CGCCACAT CAACACCAGCACAATGGGCAGCCGTT G CAGCT CT CAAGGCACCAGAGT CTT ACTT CAAAG AGCT GAAAAGAG ATTACAAT G T G AAAAAGG AG ACT CT GGTTAAGGGTTT GAAGGAAGT CGGATTTACAGT GTT CC C ATCGAGCGGGACTT ACTTTGT GGTT GCT GATCACACT CCATTT GGAAT GGAGA ACG AT GTT GCTTT CT GT GAGT AT CTTATT GAAGAAGTT GGGGT CGTT GCGAT CC CAACGAGCGT CTTTTAT CT GAAT CCAGAAGAAGGGAAGAATTT GGTTAGGTTT G CGTT CT GT AAAG ACGAAGAGACGTT GCGT GGT GCAATT G AGAGGAT GAAGCAG AAGCTTAAGAGAAAAGT CTGA SEQ ID NO: 2 Ambidopsis GPT amino acid sequence
MYLDiNGVMIKQFSFKASLLPFSSNFRQSSAKSHRPIGATMTTVSTGNESTQKPVQV
AKRLEKFKTTiFTQMSILAVKHGAjNLGQGFPNFDGPDFVKEAAiQAIKDGKNQYARG
YGIPQLNSAIAARFREDTGLVVDPEKEVTVTSGCTEAlAAAMLGUNPGDEViLFAPFY
DSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTMKTRAILMNTPHNPTGKMFTRE
ELETiASLCiEMDVLVFSDEVYDKLAFEMDNiSiASLPGMYERTVTMNSLGKTFSLTG
WKIGWAIAPPHLTWGVRQAHSYLTFATSTPAQWAAVAALKAPESYFKELKRDYNVK
KETLVKGLKEVGFTVFPSSGTYFWADHTPFGMEMDVAFCEYLiEEVGWAiPTSVF
YLNPEEGKNLVRFAFCKDEETLRGAiERyKQKLKRKV SEQ ID NO: 3 Alfalfa GS1 DNA coding; sequence (upper case) with 5' and 3' untranslated sequences (indicated in lower case).
attic c g ttf teg tittc a 111 g a 11 c a 11 g a at e a a a tc gaatcgaatctttag g a ft c a a t a c a g aticcttagaitttactaagtttgaaaccaaaaccaaaacATGTCTCTeCTTTCAGAT CTT AT C A AC CTTG AC CTCT C C G AA A CC AC G GAGAAAATCATC G C CG AATACATATGGATTGGTGGATCTGGTTTGGACTTGAGGAGCAAAGC AAGGACT CTACCAGGACCAGTTACT GACCCTT CACAGCTTCCCAAG TGGAACTAT GATGGTTCCAGCACAGGT CAAGCTCCTGGAGAAGAT AGTGAAGTTATTATCTACCCACAAGCCATTTT CAAGGACCCATTTA GAAGGGGTAACAAT AT CTTG GTTATGTGTGATG CAT ACACTCCAGC TGGAGAGCCCATTCCCACCAACAAGAGACATGCAGCTGCCAAGAT TTTCAGCCATCCTGAT GTTGTTGCT GAAGTACCATGGTATGGTATT GAGCAAGAATACACCTT GTTGCAGAAAGACAT CAATTGGCCT CTTG GTTGGCCAGTTGGTGGTTTTCCTGGACCT CAGGGACCAT ACT ATT G T66AGCTGGTGCTGACAAGGCATTTGGCCGTGACATTGTTGACTC acattacaaaggctgtctttatgccggcatcaacatgagtggaatc
A AIG G T G A A G T G A T G C CIG G T 0 A A T G G G A A T T C C A A G TT G G T C C C T cagttggtatctctgctggtgatgagatatgggttgctcgttacat TTTGGAGAGGAT CACT GAGGTTGCTGGTGTGGT GCTTT CCTTT GAC CCAAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAA ATTACAGCACCAAGTCTATGAGAGAAGATGGTGGCTATGAAGTCAT CTT GAAAGCAATT GAGAAGCTTGGGAAGAAGCACAAGGAGCACAT TGCTGCTTATGGAGAAGGCAACGAGCGTAGATTGACAGGGCGACA T GAGACAGCT GACATTAACACCTTCTTATGGGGT GTTGCAAACCGT GGTGCGTCGATTAGAGTTGGAAGGGACACAGAGAAAGCAGGGAAA GGTTATTTCGAGGATAGGAGGCCATCATCTAACATGGAT CCATATG TT GTTACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATA Agccaccacacacacatgcattgaagtatttgaaagtcattgttgattccgcattagaatttgg tcattgttttttctaggatttggatttgtgttattgttatggttcacactttgtttgtttgaatttgaggc cttgttataggtttcatatttctttctcttgttctaagtaaatgtcagaataataatgtaat SEQ ID NO: 4 Alfalfa GS1 amino acid sequence
MSLLSDUNLDLSETTEKIIAEYiWlGGSGtDLRSKARTLPGPVTDPSQLPKWNYDGS
STGQAPGEDSEVMYPGAIFKDPFRRGNNILVMCDAYTPAGEPlPTNKRHAAAKiFSH
PDWAEVPWYGIEOEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDI
VDSHYKACLYAGlNfSGiNGEVMPGQWEFQVGPSVGlSAGDElWVARYILERITEVA
GVVLSFDPKPIKGDWNGAGAHTNYSTKSyREDGGYEVILKAIEKLGKKHKEHIAAYG
EGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNIVIDP
Y VVT SIVl IADTTILWKP SEG ID NO: 5 Alfalfa GS1 DNA coding sequence (upper case) with S’ and 3' untranslated sequences (indicated in lower case) and vector sequences from Glal to Smal/SspS and Sspi/Smal to Sall/Xhoi (lowercase, underlined),
atcaataaattcaaactcgqtacccatttccattttcattttcatttaattcattaaatcaaatcaa atcgaatctttaggattcaatacagattccttagattttactaagtttgaaaccaaaaccaaaa cATGTCTCTCCTTTCAGATCTTATCAACCTTGACCTCTCCGAAACCA CCGAGAAAATCATCGCCGAATACATATGGATTGGTGGATCTGGTTT GGACTTGAGGAGCAAAGCAAGGACTCTACCAGGACCAGTTACT GA CCCTTCACAGCTT CCCAAGTGGAACTATGATGGTTCCAGCACAGGT CAAGCTCCTGGAGAAGAT AGTGAAGTT ATT ATCTACCCACAAGCCA TTTT CAAGGACCCATTTAGAAGGGGTAACAATAT CTTGGTTAT GTG TGATGCATACACTCCAGCTGGAGAGCCCATTCCCACCAACAAGAG ACATGCAGCTGCCAAGATTTTCAGCCATCCTG ATGTTGTTGCTGAA GTACCATGGTATGGT ATT GAGCAAGAAT ACACCTTGTTGCAGAAAG ACATCAATTGGCCTCTTGGTTGGCGAGTTGGTGGTTTTCCTGGACC tcagggaccatactattgtggagotggtgctgacaaggcatttgg
CCGTGACATTGTTGACTCACATTAC AAAGCCT GTOTTTAT GCCGGC atcaacatcagtggaatcaatggtgaagtgatgcctggtcaatggg AATTCCAAGTTGGTCCCT CAGTT GGTAT CT CTGCTGGT GATGAGAT ATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGGTTGCTGGT GTGGTGCTTT CCTTTGACCCAAAACCAATTAAGGGT GATTGGAAT G GTGCTGGTGCTCACACAAATTACAGCACCAAGTCTAT GAGAGAAGA TGGTGGCTAT GAAGTCATCTT GAAAGCAATTGAGAAGCTTGGGAAG AAGCACAAGGAGCACATT GCT GCTTATGGAGAAGGCAACGAGCGT AGATTGACAGGGCGACATGAGACAGCTGACATTAACACCTTCTTAT GGGGT GTTGCAAACCGTGGTGCGTCGATTAGAGTTGGAAGGGACA CAGAGAAAGCAGGGAAAGGTTATTTCGAGGAT AGGAGGCCAT CAT CTAACAT GGAT CCATAT GTTGTTACTT CCAT GATTGCAGACACCAC CATT CTCTGGAAACGATAAgccaccacacacacatgcattgaagtatttgaaagtc attgttgattccgcattagaatttggtcattgtfttttctaggatttggatttgtgttattgttatggttc acactttgtttgtttgaatttgaggccttgttataggtttcatatttctttctcttgttctaagtaaatg tcaqaataataatqtaatqqqqatcctctaqaqtcqag SEQ ID NO: 6 Arabidopsis GS1 coding sequence
Cambia 1201 vector + rbcS3C-farahidopsis GSIBoid ATG is the start site,
AAAAAAGAAAAAAAAAACATAT CTT GTTTGTCAGTAT GGGA AGTTT GAG ATAAGG ACGAGTGAGGGGTTAAAATTGAGTGGCCATTGATTTTGTAATGCCAAGAACCAC AAAATCCAATGGTTACCATTCGTGTAAGATGAGGTTTGGTAACTCTTTTrGTCGG TTAG AT AGG AAGCCTTAT C ACTATATATACAAG GCGTCCTAATAACCT CTT AGTA ACCAATTATTT CAGCACCA TGTCT CTGCTCT CAG AT CT CGTT AACCT CAACCT CA CCG AT GCCACCGGGAAAAT CAT CGCCGAAT ACATAT GGAT CGGT GGAT CT GG A
ATGGATATCAGAAGC AAAGCC AGGAOACTACC AGGACC AGT GACT GAT CC AT GA AAGCTT CCCAAGTGGAACTACGACGGATCCA6GACCGGT CAGGCTGCT GGAGA AGAGAGTGAAGTCATTCTATACCCTCAGGCAATATTCAAGGATCCCTTCAGGAAA G GC AACAACAT OCT GGT GAT GT GTGAT GCTT ACACACGAGCTGGT GATCCTATT GCAACCAAGAAGAGGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGC C AAGGAGG AGCCTTGGT AT GGGATT G AGCAAGAATAC ACTTTG ATGCAAAAGG A TGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGCTACCCTGGCCCTCAGGGAC CTT ACT ACT GTGGTGT GGG AGCT GACAAAGCCATT G GTCGT G ACATT GT GG AT G CT CACT ACAAGGCCT GT CTTT ACGCCGGTATT GGT ATTT CT GGT AT CAAT GGAGA AGT CATGCCAGGCCAGT GGGAGTT CCAAGT CGGCCCT GTTGAGGGT ATT AGTT CT GGT GAT CAAGT CT GGGTT GCT CGAT ACCTT CT CGAGAGG AT CACT GAG AT CT CT GGT GT AATT GT CAGCTT CGACCCGAAACCAGT CCCGGGT GACT GGAAT GGA GCT GGAGCT CACT GCAACTACAGCACTAAGACAATGAGAAACGATGGAGGATTA GAAGT GAT CAAGAAAGCG AT AGGGAAGCTT CAGCT GAAACACAAAGAACACATT GCTGCTTACGGTGAAGGAAACGAGCGTCGTCTCACTGGAAAGCACGAAACCGC AGACATCAACACATT CT CTT GGGG AGT CGCGAACCGT GGAGCGT CAGT GAGAG T GGGACGT G ACACAGAGAAG GAAG GT AAAGGGT ACTT CG AAG ACAG.AAGGCGA GCTTCT AACAT GGATCCTTACGTTGTCACCTCCATGATCGCT GAGACGACCATA CTCGGTTGA SEG iD NO: 7 Arabidopsis GS1 amino acid sequence Vector sequences at N^ermihus in italics
MVDLRA//?RTSMSLLSDLVNLNLTDATGKIiAEYiWIGG$GMDiRSKARTLPGPVTDPS
KLPKWNYDGSSTGGAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTN
KRHNAAKiFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYC
GVGADKAiGRDlVDAHYKACLYAGiGiSGiNGEVyPGQWEFGVGPVEGISSGDQVW
VARYLLERiTEiSGViVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEViKKAIGK
LGLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKG
YFEDRRPASNMDPYWTSMiAETTiLG SEQ ID NO: 8 Grape GPT ONA sequence
Showing Gambia 1305.1 with (3’ end of) rbcS3C+Vitis (Grape). Bold ATG is the start site, parentheses are the cat! intron and the underlined actagi is the spel cioning site used to splice in the hordeum gene,
AAAAAAGAAAAAAAAAACATATCTTGTTTGTCAGTATGGGAAGTTTGAGATAAGG ACGAGTGAGGGGTT AAAATT CAGTGGCCATT GATTTT GT AAT GCCAAGAACCAC AAAAT CCAAT GGTTACCATT CCT GT AAGAT G AGGTTT GCTAACT CTTTTT GT CCG TT AG AT AGGAAGCCTT AT CACT ATATATACAAGGCGT CCTAATAACCT CTTAGTA ACC AATT ATTT CAGC ACCA TGGTAG AT CT G AGGf GTAAATTT CT AGTTTTT CT CCT
T CATTTT CTTGGTTAGGACCCTTTT CTCTTTTTATTTTTTT GAGCTTT GAT CTTT CT TTAAACT GAT CTATTTTTT AATT GATT GGTTAT G GT GTAAAT ATTACATAGCTTTAA CT G ATAAT CT GATT ACTTTATTT CGI GT GTCT AT GAT GAT GAT GATAGTT ACAG)A ACCGACGAACTAGTAT GCAGCTCT CT CAAT GT ACCT GGACATT CCCAGAGTT GC TTAAAAGACCAGCCTTTTTAAGGAGGAGTATTGATAGTATTTCGAGTAGAAGTAG GT C C AGCT CCAAGTAT CCATCTTTCAT GGCGT CCGCAT CAACGGT CT CCGCT CC AAATACGGAGGCTGAGCAGACCCATAACCCCCCTCAACCTCTACAGGTTGCAAA GCGCTT GGAGAAATT CAAAACAACAATCTTTACT CAAATGAGCATGCTTGCCATC AAACAT GGAGCAAT AAACCTT GGCCAAGGGTTT CCCAACTTT GAT GGT CCT GAG TTT GT CAAAGAAGCAGCAATT CAAGCCATT AAGGAT GGGAAAAACCAATATGCT C GT GGAT AT GGAGTT CCTG AT CT CAACT CTGCT GTT GCT GATAG ATT CAAG AAGG AT AC AGGACT CGTG GT GGACCCCG AG AAGG AAGTT ACT GTT ACTT CTGGAT GT A CAGAAGCAATT GCT GCT ACT AT GCT AGGCTT GAT AAAT CCT GGTGATGAGGT GA TCCTCTTTGCTCCATTTTATGATTCCTATGAAGCCACTCTATCCATGGCTGGTGC C CAAAT AAAAT CCAT CACTTT ACGT CCT CCGG ATTTT GCT GT GCCCATGGAT GAG CTCAAGTCTGC AAT CTCAAAG AATAC C C GT GCAATGCTT AT AAACAGTCCCCATA ACCCCAC AGGAAAGATGTT GAC AAGGGAGGAACT GAAT GTGATTGCATCCCT CT GCATTGAGAATGATGTGTTGGTGTTTACTGATGAAGTTTACGACAAGTTGGCTTT CGAAAT GGATCACATTTCCAT GGCTTCT CTTCCTGGGATGTACGAGAGGACCGT GACT AT G AATT CCTT AGGGAAAACTTT CT CCCT GACT GGAT GGAAG ATT GGTT G G ACAGT AGCT CCCCCACACCT G ACAT GGGGAGT G AGGCAAGCCCACT CATT CC T C ACGTTTGCT ACCT GC ACCCCAAT GCAAT GGGCAGCT GCAACAGCCCT CCGG GCCCCAGACT CTTACTAT GAAGAGCTAAAGAGAGATTACAGT GCAAAGAAGGCA ATCCTGGTGGAGGGATTGAAGGCTGTCGGTTTCAGGGTATACCCATCAAGTGG GACCT ATTTT GT GGT GGT GGAT CACACCCCATTT GGGTT GAAAG ACGATATT GC GTTTTGTGAGTATCTGATCAAGGAAGTTGGGGTGGTAGCAATTCCGACAAGCGT TTT CTACTTACACCCAGAAG AT GGAAAG AACCTT GT GAGGTTTACCTT CT GT AAA G ACGAGGGAACT CT GAGAGCT GCAGTT GAAAGGAT GAAGGAGAAACT GAAGCC T AAACAATAGGGGCACGT G A SEQ ID NO; 9 Grape GPT amino acid sequence
MVDLRNRRTSMGLSQCTWTFPELLKRPAFLRRSIDSiSSRSRSSSKYPSFMASAST
VSAPNTEAEQTHNPPQPLQVAKRLEKFKTTiFTOMSMLAiKHGAINLGQGFPNFDGP
EFVKEAAIQAiKDGKNQYARGYGVPDLNSAVADRFKKDTGLWDPEKEVTVTSGCT EAlAATMLGLINPGDEVILFAPFYDSYEATLSMAGAQIKSiTLRPPDFAVPMDELKSAl
SKNTRAIUNTPHNPTGKMFTREELNVIASLClENDVLVFTDEWDKLAFEMDHiSMAS
LPGMYERTVTMNSLGKTFSLTGWKiGWTVAPPHLTWGVRQAHSFLTFATCTPMGW
AAATALRAPDSYYEELKRDYSAKKAiLVEGLKAVGFRVYPSSGTYFVWDHTPFGLK
DOiAFCEYLiKEVGVVAiPTSVFYLHPEDGKNLVRFTFCKDEGTLRAAVERMKEKLKP
KQ SEG ID NO: 10 Rice GPT DNA sequence
Rice GPT codon optimized for E. colt expression; untranslated sequences shown in lower case
atgtggATGAACCTGGCAGGCTTTCTGGCAACCCCGGCAACCGCAACCGCAACCC GICATGAAATGCGGCTGAACCCGAGCAGCAGCGCGAGCTTTCTGCTGAGCAGC CT GCGT CGI AGCCT GGT GGCGAGCCTGCGT AAAGCGAGCCCGGCAGCAGCAG CAGCACTGAGCCCGATGGCAAGCGCAAGCACCGTGGCAGCAGAAAACGGTGC AGGAAAAGGAGCAGGAGAAAAACAGCAGCAGCAGCCGGT GCAGGT GGCGAAA CGTCTGGAAAAATTTAAAACCACCATTTTTACCCAGATGAGCATGCTGGCGATTA AACAT GGCGCGATTAACCT GGGCCAGGGCTTT CC GAACTTT GAT GGCCCGGATTTT GT GAAAG AAGCGGCGATT CAGGCGATT AACGC GGGCAAAAACCAGTATGCGCGTGGCTATGGCGTGCCGGAACTGAACAGCGCGA TT GCGGAACGTTTTCT GAAAGAT AGCGGCCT GCAGGT GGAT CCGGAAAAAGAA GT GACCGT GACCAGCGGCT GGACCGAAGCGATT GCGGCGACCATT CT GGGCCT GATTAACCCGGGGGAT GAAGT GATTCT GTTT GCGCCGTTTT AT GAT AGGTATGA AGCGACCCTGAGCATGGCGGGCGCGAACGTGAAAGCGATTACCCTGCGTCGG CCGGATTTTAGCGT GCCGCT GG AAGAACT GAAAGCGGCCGT GAGCAAAAACAC CCGTGCGATTATGATTAACACCCCGCATAACCCGACCGGCAAAATGTTTACCCG T G AAGAACT GG AATTTATT GCG ACCCT GT GC AAAG AAAACG AT GT GCT GCT GIT T GCGGAT GAAGT GTATGATAAACT GGCGTTT GAAGCGGAT CATATTAGCAT GGC G AGCATT CCGGGCAT GTAT GAACGT ACCGT GACCAT GAACAGCCT GGGCAAAA CCTTT AGCCT G ACCGGCT GGAAAATT GGCT GGGCGATT GCGCCGCCGC AT CT G ACCT GGGGCGTGCGT CAGGCACATAGCTTT CT G ACCTTT GCAACCTGCACCCC GATGCAGGCAGCCGCCGCAGCAGCACTGCGTGCACCGGATAGCTATTATGAAG AACT GCGTCGT GATT ATGGCGCG AAAAAAGCGCT GCT GGT G AACGGCCT G AAA GAT GCG GGCTTT ATT GT GTAT CCGAGCAGCGGCACCTATTTT GT GAT GGT GGAT CAT ACCCCGTTT GGCTTT G ATAACGATATT GAATTTT GCGAATAT CT GATT CGT G AAGTGGGCGTGGT GGCGATT CCGCCGAGCGT GTTTTAT CT GAACCCGGAAGAT GGCAAAAACCTGGT GCGTTTTACCTTTT GCAAAGAT GAT GAAACCCTGCGT GCG GCGGT GG AACGT ATGAAAACCAAACT GCGTAAAAAAAAGCTT gcggccgcactcgagc accaccaccaccaccactga SEQ ID NO: 11 Rice GPT amino acid sequence includes amino terminal amino acids MW for cloning and His tag sequences from pet28 vector in italics,
MtWiNLAGFLATPAT AT ATRHEMPLNPSSSASFLLSSLRRSLVASLRKASPAAAAAL
SPMASASTVAAENGAAKAAAEKQQQQPVQVAKRLEKFKTTiFTQMSMLAiKHGAiNL
GOGFPNFDGPDFVKEAAIQAINAGKNQYARGYGVPELNSAIAERFLKDSGLQVDPE
KEVTVTSGOTEAtAATILGUNPGDEViLFAPFYDSYEATLSiViAGANVKAITLRPPDFS
V.PLEELKAAVSKNTRAIMINTPHNPTGKMFTREELERATLCKENDVLLFADEVYDKL
AFEADHISMASiPGMYERTVTMNSLGKTFSLTGWKiGVVAIAPPHLTVVGVRQAHSFL
TFATCTPMQAAAAAALRAPDSYYEELRRDYGAKKALLVNGIKDAGFIVYPSSGTYF
VMVDHTPFGFDNDIEFCEYUREVGWAiPPSVFYLNPEDGKNLVRFTFCKDDETtR
AAVERMKJKLRKKKLAAALEHHHHHH SEG ID NO: 12 Soybean GRT DNA sequence TOPO 151D WITH SOYBEAN for E coii expression From starting codon. Vector sequences are italicized
AJGCATCATCACCATCACCATGGTAAGCCTATCCCTAACCCTCTCCTCGGTCTC GA TTCTACGGAAAACCTG TA TTTTCAGGGAATTGATCCCTTCACCGCGAAACGT CT GGAAAAATTT CAGACCACCATTTTT ACCCAGAT GAGCCT GCT GGCGATTAAAC ATGGCGCGATTAACCTGGGCCAGGGCTTTCCGAACTTTGATGGCCCGGAATTT GT GAAAGAAGCGGCG ATT CAGGCG ATT CGT GAT GGCAAAAACCAGT AT GCGCG T GGCTAT GGCGT GCCGGAT CT GAAC ATT GCG ATT GCGG AACGTTTT AAAAAAGA TACCGGGCTGGTGGTGGATCCGGAAAAAGAAATTACCGTGACCAGCGGCTGCA CCGAAGGGATTGCGGCGACCATGATTGGCCTGATTAACCCGGGCGATGAAGTG ATTATGTTTGCGCCGTTTTATGATAGCTATGAAGCGACCCTGAGCATGGCGGGC GCGAAAGTGAAAGGCATTACCCTGCGTCCGCCGGATTTTGCGGTGCCGCTGGA AGAACT GAAAAGCACCATT AGCAAAAACACCCGT GCGATT CT GATT AACACCCC GCATAACCCGACCGGCAAAATGTTTACCCGTGAAGAACTGAACTGCATTGCGAG CCTGT GCATT G AAAACG AT GTGCTGGT GTTT ACCGAT GAAGT GT AT GATAAACT GGCGTTTGATATGGAACATATTAGCATGGCGAGCCTGCCGGGCATGTTTGAACG T ACCGT GACCCT GAACAGCCT GGGCAAAACCTTT AGCCT GACCGGCT GGAAAAT TGGCT GGGCGATT GCGCCGCCGCAT CT GAGCTGGGGCGT GCGT CAGGCGCAT GCGTTT CT GACCTTT GCAACCGCACAT CCGTTT CAGT GCGCAGCAGCAGCAGCA CTGCGT GCACCGG AT AGCT ATT ATGT GGAACT G AAACGT GATT AT AT G GCGAAA CGT GCGATT CT GATT GAAGGCCT GAAAGCGGT GGGCTTT AAAGT GTTT CCGAGC AGCGGCACCT ATTTT GTGGTGGT GGAT CAT ACCCCGTTTGGCCT GG AAAACG AT GT GGCGTTTT GCGAAT AT CT GGT G AAAGAAGT GGGCGT GGT GGCGATT CCGAC CAGCGTGTTTTATCTGAACCCGGAAGAAGGCAAAAACCTGGTGCGTTTTACCTT TT GC AAAGAT G AAGAAACCATT CGT AGCGCGGT GG AACGT AT G AAAGCGAAACT GCGTAAAGTCGACTAA SEG ID NO: 13 Soybean GPT amino acid sequence Translated protein product, vector sequences italicized
MHHHHHHGKPtPNPLLGLDSTENL YFOG/DPFrAKRLEKFGTTi FT QIVISLLAIKHGAI
NLGGGFPNFDGPEFVKEAAiQAIRDGKNQYARGYGVPDLNlAIAERFKKDTGLWDP
EKEiTVTSGCTEAlAATMIGUNPGDEVtyFAPFYDSYEATLSfclAGAKVKGiTLRPPDF
AVPLEELKSTISKNTRAILiNTPHNPTGKMFTREELNCIASLCIENDVLVFTDEVYDKL
AFDMEHISyASLPGMFERTVTLNSLGKTFSLTGWKiGWAIAPPHLSWGVRQAHAFL
TFATAHPFGCAAAAALRAPDSYYVELKRDYMAKRAIUEGLKAVGFKVFPSSGTYFV
WDHTPFGLENDVAFCEYLVKEVGWAIPTSVFYLNPEEGKNLVRFTFCKDEETIRS
AVERMKAKLRKVD SEQ ID NO: 14 Barley GPT DNA sequence Coding sequence from start with intron removed
A TGGT AGAT CT GAGGAACCGACGAA CTAGTATGGCATCCGCCCCCGCCTCCGC CT CCGCGGCCCT CT CCACCGCCGCCGCGGCCGACAACGGGGCCGCG AAGCCC ACGGAGCAGCGGCCGGTACAGGTGGGTAAGCGATTGGAGAAGTTCAAAACAAC AATTTT CACACAGAT G AGCAT GCT CGCAGT G AAGCAT GGAGCAATAAACCTT GG ACAGGGGTTT CCCAATTTT GAT GGCCCT GACTTT GT CAAAGAT GCT GCTATT GA GGCTAT CAAAGCT GGAAAGAAT CAGTATGCAAGAGG ATAT GGT GT GCCT GAATT G AACT C AGCT GTTGCT G AG AG ATTT CT CAAG G AC AGT GG ATT GC ACAT CG ATCC T GATAAGGAAGTTACT GTTACAT CT GGGT GCACAGAAGC AAT AGCT GCAACGAT ATTGGGTCT GATCAACCCT GGGGATGAAGTCATACT GTTT GCT CCATTCTATGAT TCITATGAGGCTACACTGTCCATGGGTGGTGCGAATGTCAAAGCCATTACACTC CGCCCTCCGGACTTTGCAGTCCCTCTTGAAGAGCTAAAGGCT GCAGT CTCGAA GAAT ACCAG AGCAATAAT GATTAATACACCTCACAACCCTACCGGGAAAAT GTT C ACAAGG GAGGAACTT GAGTT C ATT GCT GAT CT CT GCAAGGAAAAT G ACGT GTT G CT CTTTGCCGAT GAGGT CT ACGACAAGCT GGCGTTT GAGGCGGATCACAT AT CA AT GGCTT CTATTCCT GGCATGTAT GAGAGGACCGTCACTATGAACTCCCTGGGG AAGACGTT CTCCTT GACCGGAT GGAAGATCGGCT GGGCGATAGCACCACCGCA CCTGACATGGGGCGTAAGGCAGGCACACTCCTTCCTCACATTCGCCACCTCCA CGCCGATGCAATCAGCAGCGGCGGCGGCCCTGAGAGCACCGGACAGCTACTT TGAGGAGCTGAAGAGGGACTACGGCGCAAAGAAAGCGCTGCTGGTGGACGGG CT CAAGGCGGCGGGCTT CAT CGT CT ACCCTT CGAGCGGAACCT ACTT CAT CAT G GT CGACCACACCCCGTT CGGGTT CGACAACGACGT CGAGTT CT GCGAGT ACTT GAT CCGCGAGGT CGGCGT CGT GGCCAT CCCGCCAAGCGT GTT CT ACCT GAACC CGGAGGACGGGAAGAACCTGGTGAGGTTCACCTTCTGCAAGGACGACGACACG CT AAGGGCGGCGGTGGACAGGAT GAAGGCCAAGCTCAGGAAGAAAT GA SEQ ID NO: 15 Barley GPT amino add sequence Translated sequence from start site (sntron removed)
M VDLRN RRTSMASAPASASAALSTAAPAD N GAAKPTEQRPVGVAKRLEKF KTTI FT
OMSMLAVKHGAINLGQGFPNFDGPDFVKDAAiEAiKAGKNQYARGYGVPELNSAVA
ERFLKDSGLHJDPDKEVTVTSGCTEAlAATiLGLINPGDEViLFAPFYDSYEATLSMAG
ANVKAiTLRPPDFAVPLEELKAAVSKNTRAIMINTPHNPTGKIVIFTREELEFIADLCKE
NDVLLFADEVYDIOAFEADHISMASIPGMYERTVTMNSLGKTF3SLTGWKIGWAIAPP
HLTWGVRQAHSFLTFATSTPMQSAAAAALRAPDSYFEELKRDYGAKKALLVDGLKA
AGFIVYPSSGTYFIMVDHTPFGFDNDVEFCEYUREVGVVAIPPSVFYLNPEDGKNLV
RFTFCKDDDTIRAAVDRMKAKLRKK SEQ ID NO: 16 Zebra fish GPT DNA sequence
Danio rerio sequence designed for expression in E coli. Bold, italicized nucleotides added for cloning or from pET28b vector.
A TGTCCGT GGCG AAACGTCTGG AA AAATTT AAA ACC ACC ΑΤΠΤΤ ACCC AG AT G A
GCATGCTGGCGATTAAACATGGCGCGATTAACCTGGGCCAGGGCTTTCCGAAC
TTTGATGGCCCGGATTTTGTGAAAGAAGCGGCGATTCAGGCGATTCGTGATGGC
AACAACCAGTATGCGCGTGGCTATGGCGTGCCGGATCTGAACATTGCGATTAG
GC AACGTT AT AA AAAAG ATACCGGCCTGGCGGT GGATCCGG A AAA AG AAATT AC
CGTGACCAGCGGCTGCACCGAAGCGATTGCGGCGACCGTGCTGGGCCTGATT
AACCCGGGCGATGAAGTGATTGTGTTTGCGCCGTTTTATGATAGCTATGAAGCG
ACCCTGAGCATGGCGGGCGCGAAAGTGAAAGGCATTACCCTGCGTCCGCCGG
ATTTTGCGCTGCCGATTGAAGAACTGAAAAGCACCATTAGCAAAAACACCCGTG
CGATTCTGCTGAACACCCCGCATAACCCGACCGGCAAAATGTTTACCCCGGAAG
A ACT G A AC ACC ATT GCG AGCCTGT GC ATT G A A A ACG AT GT GCT GGT GTTT AGCG
ATGAAGTGTATGATAAACTGGCGTTTGATATGGAACATATTAGCATTGCGAGCCT
GCCGGGC AT GTTTGA ACGT ACCGTG ACC ATG A ACAGCCT GGGC A A A ACCTTT A
GCCTGACCGGCTGGAAAATTGGCTGGGCGATTGCGCCGCCGCATCTGACCTGG
GGCGTGCGTCAGGCGCATGCGTTTCTGACCTTTGCAACCAGCAACCCGATGCA
GTGGGCAGCAGCAGTGGCACTGCGTGCACCGGATAGCTATTATACCGAACTGA
AACGTGATTATATGGCGAAACGTAGCATTCTGGTGGAAGGCCTGAAAGCGGTG
GGCTTT A A AGT GTTTCCGAGC AGCGGC ACCT ATTTT GT GGTGGTGG ATCAT ACC
CCGTTTGGCCATGAAAACGATATTGCGTTTTGCGAATATCTGGTGAAAGAAGTG
GGCGTGGTGGCGATTCCGACCAGCGTGTTTTATCTGAACCCGGAAGAAGGCAA
AAACCTGGTGCGTTTTACCTTTTGCAAAGATGAAGGCACCCTGCGTGCGGCGGT
GGATCGTATGAMGAAAAACTGCGTAAA GTCGACAAGCTTGCGGCCGCACTCG
A GCA CCA CCA CCA CCA CCA CTGA SEQ ID NO: 17 Zebra fish GPT amino acid sequence
Amino acid sequence of Danio rerio cloned and expressed in E. coli (bold, italicized amino acids are added from vector/ cloning and His tag on C-terminus)
MSVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGNNQ
YARGYGVPDLNIAISERYKKDTGLAVDPEKEITVTSGCTEAIAATVLGLINPGDEVIVF
APFYDSYEATLSMAGAKVKGITLRPPDFALPIEELKSTISKNTRAILLNTPHNPTGKMF
TPEELNTIASLCIENDVLVFSDEVYDKLAFDMEHISIASLPGMFERTVTMNSLGKTFSL
TGWKIGWAIAPPHLTWGVRQAHAFLTFATSNPMQWAAAVALRAPDSYYTELKRDY
MAKRSILVEGLKAVGFKVFPSSGTYFVVVDHTPFGHENDIAFCEYLVKEVGVVAIPT SVFYLNPEEGKNLVRFTFCKDEGTLRAAVDRMKEKLRKroAL4yL4££Zf'/HHOT,ff- SEQ !D NO: 18 Arabidopsis truncated OPT -30 construct DNA sequence Arabidopsis GPT with 30 amino acids removed from the targeting sequence. atggccaaaatccatcgtcotatcggagccaccatgaccacagtttcgactcag
AAC GAGT CTACT CAAAAACCC GT CGAGGTGGCGAAGAGATTAGAGAAGTTCAAG actactattttgactgaaatgagcatattggcagttaaacatggagcgatcaatt
TAGGCCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGCTGCGA TCCAAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCATTCCTCA GCT CAACT CT GCT AT AGCT GCGCGGTTT CGT GAAGATACGGGT CTT GTT GTT GA TCCT GAGAAAGAAGTT ACT GTT AC ATCT GGTT GCACAGAAGCCATAGCT GCAGC T AT GTT GGGTTT AAT AAACCCT GGT GAT GAAGTCATT CTCTTTGCACCGTTTTAT GATT CCT AT GAAGCAACACT CTCTAT GGCT GGT GCTAAAGTAAAAGGAAT CACTT T ACGT CCACCGG ACTT CT CCAT CCCTTT GGAAG AGCTTAAAGCT GCGGTAACTA ACAAGACT CG AGCCAT CCTTAT GAACACT CCGCACAACCCG ACCGGG AAG AT GT T C ACT AGGG AGGAGCTT G AAACCATT GCAT CT CT CTGCATT GAAAACGAT GT GC TT GTGTTCT CGGAT G ΑΑΘΪ AT ACG AT AAGCTTGCGTTT GAAATGGATCACATTT C T AT AGCTTCT CTT CCCGGT AT GTATGAAAGAACTGTGACCATGAATTCCCTGGGA AAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCGCCGCCTCAT CTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACA CCAGCACAAT GGGCAGCCGTT GC AGCT CT CAAGGCACCAGAGT CTTACTT CAAA G AGCT G AAAAGAGATT ACAAT GT G AAAAAGGAGACT CTGGTTAAGGGTTT GAAG G AAGT CGG ATTT AC AGT GTTCCCAT CG AGCGGG ACTTACTTT GT GGTTGCT GAT CACACTCCATTT GGAAT GGAGAACGAT GTT GCTTT CT GT GAGTATCTTATTGAAG AAGTTGG GGT CGTT GCGAT CCCAACGAGCGT CTTTT AT CT GAAT CCAGAAGAAG GGAAGAATTTGGTT AGGTTTGCGTT CT GT AAAGACGAAGAGACGTT GC GT GGTGCAATT GAGAGG AT GAAGCAGAAGCTT AAGAGAAAAGT CT GA SEQ ID NO: 19 Arabidopsis truncated GPT -30 construct amino acid sequence
MAKIHRPIGATMTTVSTQNESTQKPVQVAKRLEKFKTTiFTQMSiLAVKHGAiNLGQG
FPNFDGPDFVKEAAIQAiKDGKNQYARGYGIPQLNSAIAARFREDTGLVVDFEKEVT
VTSGCTEAlAAAMLGUNPGDEViLFAPFYDSYEATLSMAGAKVKGiTLRPPDFSiPLE
ELKAAVINKTRAlLMNTPHNPTGKMFTREELETiASLCiENDVLVFSDEVYDKLAFEM
DHlSIASLPGIVIYERTVTMNSLGKTFSLTGWKiGWAiAPPHLTWGVRQAHSYLTFATS
TPAQWAAVAALKAPESYFKEtKRDYNVKKETLVKGLKEVGFTVFPSSGTYFVVADH
TPFGMENDVAFCEYUEEVGVVAiPTSVFYLNPEEGKNLVRFAFCKDEETLRGAlER
MKQKLKRKV SEQ ID NO: 20: Arabldopsis truncated GPT -45 construct DNA sequence Arabldopsis GPT with 45 residues in the targeting sequence removed atggcgactcagaacgagtgtactcaaaaacccgtccaggtggcgaagagatta gagaagttcaagactactattttcactcaaatgagcatattgggagttaaacatg gagcgatcaatttaggccaaggctttcccaatttcgagggtcctgattttgttaa agaagctgcgatccaagctattaaagatggtaaaaaccagtatgctcgtggata cggcattcctcagctcaactctgctatagctgcgcggtttcgtgaagatacggg tcttgttgttgatcctgagaaagaagttactgttacatctggttgcacagaagcc atagctgcagctatgttgggtttaataaaccctggtgatgaagtcattctctttg caccgttttatgattcctatgaagcaacactctctatggctggtgctaaagtaaa aggaatcactttacgtccaccggacttctccatccctttggaagagcttaaagc tgcggtaactaacaagactcgagccatccttatgaacactccgcacaacccgac cgggaagatgttcactagggaggagcttgaaaccattgcatctctctgcattga aaacgatgtgcttgtgttctcggatgaagtatacgataagcttgcgtttgaaatg gatgacatttctatagcttctcttcccggtatgtatgaaagaactgtgaccatga attcggtgggaaagactttctctttaaccggat ggaagatcggctgggggattg cgccgcgtcatctgacttggggagttcgacaagcacagtcttacctgagattgg ccacatcaacaccagcacaatgggcagccgttgcagctctcaaggcaccagag tcttacttcaaagagctgaaaagagattacaatgtgaaaaaggagactctggtta agggtttgaaggaagtcggatttacagtgttcccatcgagcgggacttactttg tggttgctgatcacactccatttggaatggagaacgatgttgctttctgtgagta tcttattgaagaagttggggtcgttgcgatcccaacgagcgtcttttatctgaat ccagaagaagggaagaatttggttaggtttgcgttctgtaaagacgaagagacg ttgcgtggtgcaattgagaggatgaagcagaagcttaagagaaaagtctga SEQ ID NO: 21: Arabldopsis truncated GPT -45 construct amino add sequence
MATQNESTGKPVGVAKRLEKFKTTiFTQMSILAVKHGAlNLGQGFPNFDGPDFVKEA
AiGAiKDGKNGYARGYGiPQLNSAiAARFREDTGLVVDPEKEVTVTSGGTEAiAAAML
GUNPGDEViLFAPFYDSYEATLSMAGAKVKGiTLRPPDFSiPLEELKAAVTNKTRAIL
MNTPHNPTGKMFTREELETiAStGiENDVLVFSDEWDKLAFEMDHiSiASLPGMYER
TVTMNSLGKTFSLTGWKJGWAIAPPHLTWGVRQAHSYLTFATSTPAQWAAVAALKA
PESYFKELKRDYNVKKETLVKGLKEVGFTVFPSSGTYFWADHTPFGMENDVAFCE
YUEEVGVVAlPTSVFYLNPEEGKNLVRFAFGKDEETLRGAiERMKQKLKRKV SEQ ID NO: 22: Tomato Rubisco promoter TOMATO RuBisCo rbcS3C promoter sequence from Kpnl to Ncoi
GGTA CCGTTTGAAT CCT GGTTAMGTTTTT CT CTGGAGAAACTGTAGT AATTTTAC TTTGTT GT GTTCCCTT CAT CTTTTGAATTAAT GGCATTT GTTTTAATACT AAT CTGC TTGT G AAACTT GTAAT GTATGTATATCAGTTT CTTATAATTT AT CC AAGT AATAT CT
T CGATT CTCTAT GCAATT GCCT GC AT AAGCT CG ACAAAAG AGT ACAT CAACCCCT CCT CCT CT GG ACTACT CTAGCTAAACTT GAATTTCCCCTT AAG ATT AT G AAATT G ATAT AT GCTTAACAAACGACT CCTT CT GTT GG AAAAT GT AGT ACTT GT CTTT CTT C TTTT GGGTATATATAGTTT AT AT ACACCATACT AT GT ACAACAT CCAAGT AGAGT G AAAI GOAT ACAT GTACAAGACTTATTT GATT GATTG AT GACTT G AGTT GCCTTAG GAGTAACAAATT CTT AGGT C AATAAAT CGTT GATTT GAMTTAAT CT CTCT GT CTT AGACAGATAGGAATT AT GACTTCC AAT GGT CCAGAAAGCAAAGTT CGCACT GAG GGTATACTT GGAATT GAGACTT GCACAGGT CCAGAAACCAAAGTT CCCAT CG AG CT CTAAAAT CACAT CTTT GG AAT G AAATT CAATTAGAGATAAGTT GCTT CAT AGCA TAGGTAAAAT GG AAG AT GT GAAGT AACCT GC AAT AAT C AGT G AAAT G AC ATTAAT AC ACTAAATACTT CATATGTAATTAT CCTTT CC AGGTTAACAATACT CTATAAAGT AAGAATTAT CAG AAAT GGGCT CAT CAAACTTTT GT ACT AT GTATTT CATATAAGGA AGTATAACTATACATAAGT GT AT AC AC AACTTTATT CCTATTTT GTAAAG GT GG AG AGACT GTTTT CG AT GG AT CT AAAGCAAT AT GT CT AT AAAAT GCATT GATATAAT AA TTAT CT GAGAAAAT CCAG AATT GGCGTT GGATTATTT CAGCCAAATAGAAGTTT G TACGATAGTTGTT GATT CCTTCT AAGTT AAGGTGAAGTATCATTCATAAACAGTTT TCCCCAAAGTACTACTCACCAAGTTTCCCTTTGTAGAATTAACAGTTCAAATATAT GGCGCAGAAATTACTCTATGCCCAAAACCAAACGAGAAAGAAACAAAATACAGG GGTTGCAGACTTT ATTTT CGT GTT AGGGTGT GTTTTTT CATGTAATTAATCAAAAA ATATTAT GACAAAAACATTT AT ACAT ATTTTT ACTCAACACT CT GGGTAT CAGGGT GGGTTGTGTT CG AC AAT CAAT AT G G AAAG GAAGTATTTT CCTTATTTTTTTAGTTA AT ATTTT C AGTT AT ACCAAAC AT ACCTT GT GATATTATTTTTAAAAAT G AAAAACT C GT C AG AAAGAAAAAGC AAAAGCAACAAAAAAATT GCAAGT ATTTTTTAAAAAAG A AAAAAAAAAC AT AT CTT GTTT GT CAGTAT GGGAAGTTT GAG AT AAGG ACGAGT GA GGGGTT AAAATT CAGT GGCCATT GATTTT GT AAT GCCAAGAACCACAAAAT CCAA T GGTTAGCATTCCTGTAAGAT G AGGTTT GCT AACT CTTTTT GT CCGTTAGATAGG AAGCCTTATCACT AT AT AT ACAAGGCGT CCT AAT AACCT CTT AGTAACCAATT ATT TCAGCA CCMGG SEG iD NO; 23; Bamboo GPT DNA sequence
ATGGCCTCCGCGGCCGTCTCCACCGTCGCCACCGCCGCCGACGGCGTCGCGA AGCC6ACGGAGAAGCAGCCGGTACAGGTCGCAAAGCGTTTGGAAAAGTTTAAG ACAAC AATTTT CACACAGAT GAGCATGCTTGCCAT CAAGCAT GGAGCAATAAAC CTCGGCCAGGGCTTTCCGAATTTTGATGGCCCTGACTTTGTGAAAGAAGCTGCT ATT CAAGCT AT CAAT GCT G GGAAGAAT CAGT AT GCAAG AG GAT ATGGTGTGCCT GAACT GAACT CGGCT GTT GCT GAAAGGTT CCT GAAGGACAGTGGCTT GCAAGT C GAT CCCGAGAAGGAAGTT ACT GTCACATCT GGGTGCACGGAAGCGAT AGCT GC AACG AT ATT GGGT CTT AT C AACCCT G GCGAT GAAGT GAT CTT GTTT GCT CCATT C T AT GATT CAT ACG AGGCT ACGCT GT CG AT GGCTGGT GCCAAT GT AAAAGCCATT ACT CT CCGT CCT CCAGATTTT GCAGT CCCT CTT GAG GAGCT AAAGGCCACAGT C T CT AAGAACACCAG AGCGATAAT GATAAACACACCACACAAT CCT ACT GGG AAA AT GTTTT CT AGGGAAGAACTT GAATT C ATT GCT ACT CT CTGCAAG AAAAAT GAT G
TGTTGCTTTTT GCTGATGAGGT CT ATGACAAGTTGGGATTTGAGGCAGAT CAT AT ATCAATGGCTT CT ATTCCTGGCATGTATGAGAGGACT GT GACTATGAACT CTCTG G GGAAGAC ATT GT CT CTAACAG GAT GGAAGAT CGGTTGGGCAATAGGACGACCA CACCTGACATGGGGTGTAAGGCAGGCACACTCATTCCTCACATTTGCCACCTGC ACACCAAT GGAAT CGGGG GCGGCG GCGGCTCTT AGAGCACCAGAT AGGTACTA T GGGGAGCT GAAGAGGGATTACGGTGCAAAGAAAGCGAT ACTAGTCGAGGGAC TCAAGGCT GCAGGTTTT ATTGTTTACCCTTCAAGTGGAACAT ACTTTGTCAT GGT CGAT CACACCCCGTTT GGTTT CGACAAT GAT ATT GAGTT CT GCGAGT ATTT GAT C CGCGAAGT CGGTGTT GTCGCCAT ACCACCAAGCGT ATTTTAT CT CAACCCT GAG GAT GGGAAGAACTT GGT GAGGTT CACCTTCT GCAAGGAT GAT GATACGCT GAGA GCCGCAGTT GAGAGG AT G AAG ACAAAGCT CAGGAAAAAAT GA SEG ID NO: 24: Bamboo GPT amino acid sequence
MASAAVSTVATAADGVAKPTEKQPVQVAKRLEKFKTTiFTQMSMLAiKHGAINLGQG
FPNFDGPDFVKEAAfGAiNAGKNQYARGYGVPELNSAVAERFLKDSGLQVDPEKEV
TVTSGCTEAiAATILGLiNPGDEVlLFAPFYDSYEATLSMAGANVKAiTLRPPDFAVPL
EELKATVSKNTRAtytNTPHNPTGKMFSREELEFlATLCKKNDVLLFADEVYDKLAFE
ADHISMASIPGMYERTVTMNSLGKTFSlTGWKIGWAiAPPHLTWGVRQAHSFLTFA
TCTPMQSAAAAALRAPDSYYGELKRDYGAKKAILVDGLKAAGFIVYPSSGTYFVMV
DHTPFGFDNDlEFCEYLiREVGWAfPPSVFYLNPEDGKNLVRFTFCKDDDTLRAAVE
RMKTKLRKK SEQ ID NO: 25; 1305.1+rbcS3C promoter + cat! intron with rice GPT gene.
Camblai 305.1 with (3' end of) rbcS3C+rice GPT. Underlined ATG is start site, parentheses are the cat! intron and the underlined actagi is the spel cloning site used to splice in the rice gene.
AAAAAAGAAAAAAAAAACAT AT GTT GTTTGTCAGTATGGGAAGTTTGAGATAAGG AGGAGTGAGGGGTTAAAATTCAGTGGCCATTGATTTTGTAATGCCAAGAACCAC AAAATCCAATGGTTACCATTCCTGTAAGATGAGGTTTGCTAACTCTTTTTGTCCG TT AG ATAGG AAGCCTT AT CACT AT AT AT ACAAGGCGTCCTAATAACCTCTT AGTA ACCAATT ATTT CAGC ACCATGGTAGATCT G AGG(GTAAATTT CTAGTTTTT CT CCT T CATTTT CTT GGTT AGG ACCCTTTT CT CTTTTTATTTTTTT GAGCTTT GAT CTTT CT TT AAACT GAT CTATTTTTT AATT GATT GGTTAT G GTGT AAATATTACATAGCTTTAA CTG AT AAT CT GATT ACTTT ATTT CGT GTGT CTAT GAT GAT GAT GATAGTTACAG)A ACCGACGAA CL4G7AT G AAT CT GGCCGGCTTT CT CGCCACGCCCGCGACCGCG ACCGCGACGCGGC AT GAGAT GCCGTT AAAT CCCT CCT CCT CCGCCT CCTT CCT C CT CTCCT CGCT CCGCCGCT CGCT CGT CGCGTCGCTCCGGAAGGCCT CGCCGG CGGCGGCCGCGGCGCTCTCCCCCATGGCCTCCGCGTCCACCGTCGCCGCCGA GAACGGCGCCGCCAAGGCGGCGGCGGAGAAGCAGCAGCAGCAGCCTGTGCA
GGTT GC AAAGCGGTTGGAAAAGTTT AAGACGACCATTTT CACACAGAT GAGT AT GCTTGCCATCAAGCATGGAGCAATAAACCTTGGCCAGGGTTTTCCGAATTTCGA T GGCCCT GACTTT GTAAAAG AGGCTGCTATT CAAGCT AT CAAT GCT GGG AAGAA T C AGTACGCAAG AGGATAT GGTGTGCCT GAACT GAACT CAGCT ATTGCT G AAAG ATT CCT GAAGGACAGCGGACT GGAAGT CGAT CCGGAGAAGGAAGTT ACT GTCA CATCTGGATeCACAGAAGCTATAGCTGCAACAATTTTAGGTCTAATTAATCCAGG CGATGAAGTGATATTGTTTGCTCCATT CTAT GATT CATATGAGGCTACCCT GT CA AT GGCT GGT GCCAACGTAAAAGCCATTACT CT CCGT CCT CCAGATTTTT CAGT C CCT CTT GAAG AGCTAAAGGCT GCAGT CT CGAAGAACACCAG AGCT ATT AT GAT A AACACCCCGCACAAT CCTACT GGGAAAAT GTTT ACAAGGGAAGAACTT G AGTTT ATT GCCACT CT CT GCAAGGAAAAT GAT GTGCT GCTTTTT GCT GAT GAGGT CTAC GACAAGTTAGCTTTT G AGGCAGAT CAT AT AT CAAT GGCTT CT ATT CCT GGCAT GT AT GAGAGG ACCGT G ACC AT GAACT CT CTT GGG AAG AC ATT CT CT CTT ACAG GAT GGAAGATCGGTTGGGCAATCGCACCGCCACACCTGACATGGGGTGTAAGGCAG GCACACTCATT CCT CACGTTTGCGACCT GCACACCAAT GC AAGCAGCT GCAGCT GG AGCT GTG AG AGC ACC AG ATAGCTACTAT G AGGAACT G AGG AGGGATT ATGG AGGTAAGAAGGCATTGCTAGTCAACGGACTCAAGGATGCAGGTTTCATTGTCTA TCCTTCAAGTGGAACATACTTCGTCATGGTCGACCACACCCCATTTGGTTTCGA CAAT GATATTG AGTTCT GCGAGTATTT GATT CGCGAAGT CGGTGTT GT CGCCATA CCACCT AGT GTATTTT AT CT CAACCCT G AGG AT GGGAAGAACTTGGT GAGGTT C ACCTTTT GCAAG GAT GAT GAGACGCT GAGAGCCGCGGTT GAGAGGAT GAAG AC AAAGCTCAGGAAAAAAT GA SEG IP NO: 26: HORDEUM GPT SEQUENCE IN VECTOR Cambiai30S.1 with (3' end of) rbcS3C+hordeum IDI4. Underlined ATG is start site, parentheses are the calf intron and the underlined actagt is the spet cloning site used to splice in the hordeum gene,
AAAAAAGAAAAAAAAAAC AT AT CTT GTTT GT CAGT AT G GGAAGTTT GAGATAAGG ACGAGTGAGGGGTTAAAATTCAGTGGCCATTGATTTTGTAATGCCAAGAACCAC AAAAT CCAAT GGTT ACCATT CCT GT AAGAT GAGGTTT GCT AACT CTTTTT GT CCG TT AG AT AGG AAGCCTT AT CACT AT AT AT ACAAG GCGT CCT AATAACCT CTT AGT A ACCAATT ATTT CAGC ACCATGGT AGAT CT G AGG(GT AAATTT CT AGTTTTT CT CCT T C ATTTT CTT GGTT AGG ACCCTTTT CT CTTTTT ATTTTTTT G AGCTTT GAT CTTT CT TT AAACT GAT CTATTTTTT AATT GATT GGTTAT GGTGT AAAT ATT ACAT AGCTTT AA CT GAT AAT CT GATT ACTTT ATTT CGT GTGTCT AT GAT GAT GAT GATAGTT ACAG )A ACCGACGAACTAGTAT GGCAT CCGCCCCCGCCT CCGCCT CCGCGGCCCT CT CC ACCGCCGCCCCCGCCGACAACGGGGCCGCCAAGCCCACGGAGCAGCGGCCG GT ACAGGT GGCT AAGCG ATT GGAGAAGTT CAAAACAAC AATTTT CACACAGAT G AGCAT GCT CGCAGT GAAGCAT GGAGCAAT AAACCTT GGACAGGGGTTT CCCAAT TTT GATGGCCCT GACTTT GT CAAAGAT GCTGCT ATT GAGGCT AT CAAAGCTGG A AAG AAT CAGT AT GCAAG AG GAT ATGGTGTGCCT GAATT GAACT CAGCT GTT GCT GAGAGATTT CT CAAGGACAGT GGATT GCACAT CGAT CCT GAT AAGGAAGTT ACT
GTT ACAT CT GGGT GCACAGAAGCAAT AGCTGCAACGAT ATT GGGT CT GAT CAAC CCTGGGGAT GAAGT CAT ACT GTTT GCTCCATT CT AT GATT CTT ATGAGGCT ACAC T GT CCATGGCT GGTGGGAAT GT CAAAGGC ATTACACT CCGCCCT CCGGACTTT G CAGTCGCTCTTGAAGAGGTAAAGGCTGCAGTCTCGAAGAATACCAGAGCAATAA T GATTAATACACGTCAGAAGGCTAGCGGGAAAATGTT CACAAGGGAGGAACTT G AGTTGATTGCTGAT CTCTGCAAGGAAAAT GAGGT GTT GCT CTTT GCCGAT GAGG TCTACGACAAGCTGGCGTTTGAGGCGGATCACATAT CAAT GGCTTCTATT CCT G GC AT GTAT GAGAGGACCGT CACTAT GAACT CCCT GGGGAAGACGTT CT CCTT GA CCGGAT GGAAGAT CGGCT GGGCGATAGCACCACCGCACCT GACAT GGGGCGT AAGGCAGGCAC ACT CCTT CCT CACATT CGCCACCT CCACGCCGAT GCAAT CAGC AGCGGCGGCGGCCCT GAGAGCACCGGACAGCT ACTTT G AGGAGCT GAAGAGG GACT ACGGCGCAAAGAAAGCGCT GCT GGT GGACGGGCT CAAGGCGGCGGGCT T CAT CGTCT ACCCTT CG AGCGGAACCTACTT CAT CAT GGT CGACCACACCCCGT TCGGGTT CG ACAACG ACGT CGAGTT CT GCG AGT ACTT GAT CCGCGAGGT CGGC GTCGTGGCCATCCCGCCAAGCGTGTTCTACCTGAACCCGGAGGACGGGAAGAA CCT G GT GAGGTT G ACCTT CT GCAAGGACGACGACACGCTAAGGGCGGCGGT G GACAGGAT GAAGGCCAAGCTCAGGAAGAAATGATT GAGGGGCQCACGTGTGA SEQ ID NO: 27 Gambia 1201 + Arabidopsis GPT sequence (35S promoter from CaMV in italics)
CATGGAGTCAAAGATTCAAATAGAGGACCTAACAGAACTCGCCGTAAAGACTGG CGAACAGTTCATACAGAGTCTCTTACGACTCAATGACAAGAAGAAAATCTTCGTC AACATGGTGGAGCACGACACACTTGTCTACTCCAAAAATATCAAAGATACAGTCT CAGAAGACCAAAGGGCAATTGAGACTTTTCAACAAAGGGTAATATCCGGAAACC TCCTCGGA TTCCA TTGCCCAGCTA TCTGTCACTTTA TTG TGAAGA TAGTGGAAAA GGAAGGTGGCTCCTACAAA TGCCA TCA TTGCGA TAAA GGAAA GGCCATCG TTG A AGATGCCTCTGCCGACAGTGGTCCCAAAGATGGACCCCCACCCACGAGGAGCA TCGTGGAAAAAGAAGACGTTCCAACCACGTCTTCAAAGCAAGTGGATTGATGTG ATATCTCCACTGACGTAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACC CTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGAACACGGGGGACTCTTGA CCAT GT ACCT GGACATAAAT GGT GT GAT GAT CAAACAGTTTAGCTT CAAAGCCT C T CTT CT CCCATT CT CTT CTAATTT CCG ACAAAGCT CCGCCAAAAT CC AT CGT CCT AT CGG AGCCACCAT G ACCACAGTTT CG ACT C AG AACGAGT CT ACT CAAAAACCC GT CCAGGT GGCGAAGAGATTAGAGAAGTT CAAGACT ACT ATTTT CACT CAAAT G AGCATATTGGCAGTTAAACAT GGAGCGAT CAATTTAGGCCAAGGCTTT CCCAATT T CGACGGT CCT GATTTT GTTAAAGAAGCT GCG AT CCAAGCT ATT AAAG AT GGT AA AAACCAGTATGCTCGTGGATACGGCATTCCTCAGCTCAACTCTGCTATAGCTGC GCGGTTT CGT GAAGATACGGGT CTT GTT GTT GAT CCT GAGAAAG AAGTT ACT GT TACAT CT GGTT GCACAGAAGCCATAGCT GCAGCTAT GTT GGGTTT AAT AAACCCT GGT GAT GAAGT CATT CT CTTT GCACCGTTTTAT GATT CCTAT GAAGCAAC ACT CT CT AT GGCT GGT GCTAAAGTAAAAGGAAT CACTTT ACGT CCACCGGACTT CT CCA T CCCTTT GG AAGAGCTTAAAGCT GCGGT AACTAACAAGACT CGAGCCAT CCTT A
T GAACACT CCGCACAACCCGACCGGGAAGATGTT CACTAGGGAGGAGCTT GAA ACCATTGCAT CT CT CT GC ATT GAAAACGAT GT GCTT GT GIT CTCGGAT GAAGTAT ACGATAAGCTT GGGTTT GAAAT GGAT CACATTT CTATAGCTT CTCTTCCCGGTAT GTAT GAAAGAACT GT G ACCAT GAATT CCCT GGG AAAGACTTTCT GTTTAACCGGA TGGAAGATCGGCTGGGCGATTGCGCCGCCTCATCTGACTTGGGGAGTTCGACA AGCACACTGTTACCTCACATTCGCCACATCAACACCAGCACAATGGGCAGCOGT TGCAGCTCTCAAGGCACCAGAGTCTTACTTCAAAGAGCTGAAAAGAGATTACAA TGT GAAAAAGGAGACT CTGGTTAAGGGTTT GAAGGAAGT CGGATTTACAGTGTT CCCAT CGAGCGGGACTT ACTTT GT GGTT GCT GAT CACACT CCATTT GGAAT GG A GAACGAT GTT GCTTT CT GT GAGTAT CTTATT GAAGAAGTT GGGGT CGTT GCGAT CCCAACG AGCGT CTTTT AT CT GAAT CCAG AAG AAGGG AAGAATTT GGTTAGGTT T GCGTT CT GTAAAGACG AAGAG ACGTT GCGT GGT GCAATT G AGAGGAT G AAGC AGAAGCTTAAGAGAAAAGT CT GA SEG ID NO: 28 Gambia p1305.1 with (3> end of) rbcS3C+Arabidopsis GPT. Underlined ATG is start site, parentheses are the catl intron and the underlined actagt is thespel cloning site used to splice in the Arabidopsis gene.
AAAAAAGAAAAAAAAAAC AT AT CTT GTTTGT CAGTAT G GGAAGTTTGAGATAAGG ACGAGTGAGGGGTT AAAATT CAGTGGCCATT GATTTTGT AAT GCCAAGAAGCAC AAAATGCAAT GGTTACCATTCGT GTAAGATGAGGTTTGCTAACTCTTTTT GTCCG TT AG AT AGG AAGCCTTATC ACTATATATACAAGGCGT CCTAATAACCT CTT AGT A ACCAATT ATTT CAGC ACCA TGGT AGAT CT GAGGIGT AAATTT CTAGTTTTT CT CCT T C ATTTT CTT GGTT AGG ACCCTTTT CT CTTTTTATTTTTTT GAGCTTT GAT CTTT CT TT AAACT GAT CT ATTTTTT AATT G ATTGGTTAT GGT GTAAATATTACATAGCTTTAA CT GATAAT CT GATT ACTTT ATTT CGTGTGTCT AT GAT GAT GAT GAT AGTTACAG )A ACCGACGAACTAGTAT GTACCT GGACAT AAAT GGT GT GAT GAT CAAACAGTTTA GCTT CAAAGCCT CT CTT CT CCCATT CT CTT CT AATTT CCGACAAAGCTCCGCCAA AAT CC AT CGTCCT AT CG GAGCCACCAT GACCAC AGTTT CG ACT C AG AACGAGT C T ACTCAAAAACCCGT CCAGGT GGCG AAGAGATT AGAGAAGTT CAAGACT ACT AT TTT CACT CAAAT GAGCAT ATT GGCAGTT AAACATGGAGCGAT CAATTT AGGCCAA GGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGCTGCGATCCAAGCTA TT AAAGAT GGT AAAAACCAGT ATGCTCGT GGAT ACGGCATTCCT CAGCT CAACT CT GCT AT AGCT GCGCGGTTTCGT GAAG AT ACGGGT CTT GTT GTT GAT CCT GAGA AAGAAGTTACTGTTACATCTGGTTGCACAGAAGCCATAGCTGCAGCTATGTTGG GTTT AAT AAACCCT G GT GAT GAAGT CATT CT CTTTGCACCGTTTT AT GATT CCT AT G AAGCAACACT CT CT AT GGCT GGT GCT AAAGT AAAAGG AAT C ACTTT ACGT CCA CCGGACTT CT CCAT CCCTTT GGAAGAGCTT AAAGCT GCGGT AACT AACAAGACT CGAGCCAT CCTTAT GAACACTCCGCACAACCCGACCGGGAAGATGTT CACTAG GGAGGAGCTT GAAACCATT GCAT CT CT CT GCATT GAAAACGAT GT GCTT GT GTT CTCGGAT GAAGT AT ACGAT AAGCTTGCGTTT GAAATGGAT CACATTT CT AT AGCT TCT CTT CCCGGT AT GT AT GAAAGAACT GT G ACC AT G AATTCCCT GGG AAAG ACTT T CT CTTTAACCGGATGGAAGAT CGGCT GGGCG ATT GCGCCGCCT CAT CT GACTT
GGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACCAGCAC AATGGG CAGCC GTTGCAGCT CT CAAG GCACC AG AGT CTTACT! C AAAGAGCT GA A AAG AG ATT ACAAT GTGAAAAAGGAG ACT CT GGTT AAGGGTTT GAAGGAAGT CG G ATTTAC AGT GTT CCCATGG AGGGGG ACTTACTTT GT GGTT GCT GAT CAC ACT C GATTTGGAATGGAGAACGATGTTGCTTTCTGTGAGTATCTTATTGAAGAAGTTGG GGT GGTT GCGAT CCCAACGAGCGTCTTTTAT CT GAAT CCAGAAGAAGGGAAGAA TTT GGTT AGGTTT GCGTTCTGTAAAGACGAAGAGACGTT GCGT GGTGCAATT GA GAGG AT GAAGCAGAAGCTTAAGAG AAAAGT CT GA SEG ID NO: 29 Arabidpsis QPT coding sequence (mature protein, no targeting sequence)
GT GGCGAAGAG ATTAGAGAAGTT CAAG ACT ACTATTTT C ACT C AAAT G AGCAT AT TGGCAGTTAAACATGGAGCGATCAATTTAGGCCAAGGCTTTCCCAATTTCGACG GTCCT GATTTTGTTAAAGAAGCTGCGAT CCAAGGT ATTAAAGAT GGT AAAAACCA GTATGCTCGTGGATACGGCATTCCTCAGCTCAACTCTGCTATAGCTGCGCGGTT IC GTGAAGATACGGGT CTT GTT GTT GAT CCT GAGAAAGAAGTT ACT GTTAC AT CT GGTT GCACAGAAGCCATAGCT GCAGCTAT GTTGGGTTTAATAAACCCT GGT GAT GAAGT CATT CT CTTT GCACCGTTTT AT GATT CCTAT GAAGCAACACT CT CT AT GG CTGGT GCT AAAGT AAAAGGAAT CACTTT ACGT CCACCGGACTT CT CCAT CCCTTT GG AAGAGCTT AAAGCT GCGGT AACTAACAAGACT CGAGCCAT CCTTAT GAACAC TCCGCACAACCCGACCGGGAAGATGTTCACTAGGGAGGAGCTTGAAACCATTG CAT CT CT CT GCATT G AAAACGAT GT GCTT GT GTT CT CGGAT GAAGTATACGATAA GCTT GCGTTT GAAAT GGAT CACATTT CT ATAGCTT CT CTT CCCGGTAT GTAT GAA AGAACT GT G ACC AT G AATT CCCT GGG AAAGACTTT CT CTTTAACCGGAT GGAAG ATCGGCTGGGCGATTGCGCCGCCTCATCTGACTTGGGGAGTTCGACAAGCACA CT CTT ACCT CACATTCGCCAC AT CAACACCAGCACAAT GGGCAGCCGTT GCAGC TCT CAAGGCACCAGAGT CTTACTTCAAAGAGCTGAAAAGAGATTACAATGTGAAA AAGGAGACT CTGGTT AAGGGTTT GAAGGAAGT CGGATTT AC AGT GTT CCCAT CG AGCGGGACTTACTTTGTGGTTGCTGATCACACTCCATTTGGAATGGAGAACGAT GTT GCTTT CT GT GAGT AT CTT ATT GAAG AAGTT GGGGT CGTTGCGATCCCAACG AGCGT CTTTT AT CTGAAT CCAGAAGAAGGGAAG AATTT GGTT AGGTTT GCGTT CT GTAAAGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTT AAG AG AAAAGT CT G A SEG ID NO: 30 Arabidpsis GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFKTTSFTGMSiLAVKHGAiNLGQGFPNFDGPDFVKEAAiQAIKDGKNGYAR
GYGIPQLNSAIAARFREDTGLWDPEKEVTVTSGCTEAIAAAMLGLINPGDEVILFAP
FYDSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTNKTRAiLMNTPHNPTGKMFT
REELETiASLCiENDVLVFSDEVYDKLAFEMDHISiASLPGMYERTVTIVSNSLGKTFSL
TGWKlGWAtAPPHLTWGVRQAHSYLTFATSTPAQWAAVMLKAPESYFKELKRDYN
VKKETLVKGLKEVGFTVFPSSGTYFWADHTPFGMENDVAFCEYUEEVGVVAIPTS
VFYLNPEEGKNLVRFAFCKDEETLRGAIERMKQKLKRKV SEQ ID NO: 31 Grape GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFKTTIFTQMSMLAiKHGAiNLGQGFPNFDGPEFVKEAAiQAiKDGKNQYAR
GYGVPDLNSAVADRFKKDTGLVVDPEKEVTVTSGCTEASAATMLGUNPGDEVILFA
PFYDSYEATLSMAGAQIKSITLRPPDFAVPMDELKSAISKNTRAiUNTPHNPTGKMFT
REELNViASLCiENDVLVFTDEVYDKLAFEMDHISMASLPGMYERTVTMNSLGKTFS
LTGWKIGWTVAPPHLTWGVRGAHSFLTFATCTPMQWAAATALRAPDSYYEELKRD
YSAKKAiLVEGLKAVGFRWPSSGTYFWVDHTPFGLKDDiAFCEYLiKEVGWAIPT
SVFYLHPEDGKNLVRFTFCKDEGTLRAAVERMKEKLKPKQ SEQ ID NO: 32 Rice GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFKTTIFTQMSyLAiKHGAINLGQGFPNFDGPDFVKEAAiQAINAGKNQYAR
GYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAlAATILGLiNPGDEViLFAPF
YDSYEATLSMAGANVKAiTLRPPDFSVPLEELKAAVSKNTRAIMiNTPHNPTGKMFT
REELEFIATLCKENDVLLFADEWDKLAFEADHISMASiPGMYERTVTMNSLGKTFSL
TGWKiGWAiAPPHLTWGVRQAHSFLTFATCTPMQAAAAAALRAPDSYYEELRRDY
GAKKALLVNGLKDAGFIVYPSSGTYFVMVDHTPFGFDNDIEFCEYUREVGWAIPPS
VFYLNPEDGKNLVRFTFCKDDETLRAAVERyKTKLRKK SEQ ID NO: 33 Soybean GPT amino acid sequence (-1 mature protein, no targeting sequence)
AKRLEKFQTTIFTQMSLLAIKHGAiNLGQGFPNFDGPEFVKEAAiQAiRDGKNQYARG
YGVPDLNIAIAERFKKDTGLWDPEKEITVTSGCTEAlAATMiGLiNPGDEViyFAPFY
DSYEATLSMAGAKVKGITLRPPDFAVPLEELKSTiSKNTRAIUNTPFiNPTQKft/IFTRE
ELNC!ASLGiENDVLVFTDEVYDKLAFDMEFilSMA$LPGMFERTVTLN$LGi<TFSLTG
WKiGWAiAPPHLSWGVRGAHAFLTFATAHPFQCAAAAALRAPDSYYVELKRDYMAK
RAiLIEGLKAVGFKVFPSSGTYFVWDHTPFGLENDVAFCEYLVKEVGVYAIPTSVFY
LNPEEGKNLVRFTFCKDEETIRSAVERMKAKLRKVD SEQ ID NO: 34 Barley GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFfCmFTGMSMLAVKHGAiNLGQOFPNFDGPPFVKDAAlEAiKAGKNQYA
RGYGVPELNSAVAERFLKDSGLHIDPDKEVTVTSGCTEAiAATILGUNPGDEVILFAP
FYDSYEATLSMAGANVKAITLRPPDFAVPLEELKAAVSKNTRAIMINTPHNPTGKMFT
REELEFiADLCKENDVLLFADEVYDKLAFEADHISMASiPGMYERTVTyNSLGKTFSL
TGWKiGWAIAPPHLTWGVRQAHSFLTFATSTPyQSAAAAALRAPDSYFEELKRDYG
AKKAtLVDGLKAAGFIWPSSGTYFiyVDHTPFGFDNDVEFCEYUREVGWAiPPSV
FYLNPEDGKNLVRFTFCKDDDTLRAAVDRMKAKLRKK SEQ ID NO: 35 Zebra fish GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFKTTiFTQysyLAIKHGAINLGQGFPNFDGPDFVKEAAIQAiRDGNNQYA
RGYGVPDLNIAiSERYKKDTGLAVDPEKEITVTSGCTEAlAATVLGUNPGDEViVFAP
FYDSYEATLSMAGAKVKGITLRPPDFALPtEELKSTlSKNTRAILLNTPNNPTGKyFTP
EELNTiASLCiENDVLVFSDEVYDKLAFDyEHISiASLPGMFERTVTMNSLGKTFSLT
GWKlGWAIAPPHLTWGVRQAHAFLTFATSNPlVIQWAAAVAtRAPDSYYTELKRDYM
AKRSILVEGLKAVGFKVFPSSGTYFVWDHTPFGHENDIAFCEYLVKEVGVVAIPTSV
FYLNPEEGKNLVRFTFCKDEGTLRAAVDRMKEKLRK SEQ ID NO: 36 Bamboo GPT amino acid sequence (mature protein, no targeting sequence)
VAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKEAAiGAINAGKNGYAR
GYGVPELNSAVAERFLKDSGLQVDPEKEVTVTSGCTEAlAATILGLiNPGDEVlLFAP
FYDSYEATLSMAGANVKAITLRPPDFAVPLEELKATVSKNTRAiyiNTPHNPTGKMFS
REELEFfATLCKKNDVLLFADEVYDKLAFEADHISMASIPGyYERTVTMNSLGKTFSL
TGWKIGWAiAPPHLTWGVRQAHSFLTFATCTPyQSAAAAALRAPDSYYGELKRDY
GAKKAiLVDGLKAAGFlVYPSSGTYFVyVDHTPFGFDNDIEFCEYUREVGVVAiPPS
VFYLNPEDGKNlVRFTFCKDDDTLRAAVERyKTKLRKK

Claims (37)

  1. Claims:
    1. A transgenic plant comprising a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene, wherein said GPT transgene and said GS transgene are each operably linked to a plant promoter, wherein said GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of amino acid sequences that have at least 80% sequence identity to any one of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 11; SEQ ID NO: 13; SEQ ID NO: 15; SEQ ID NO: 17; SEQ ID NO: 19, and SEQ ID NO: 21, and having GPT catalytic activity; and wherein said GS transgene encodes a polypeptide having an amino acid sequence selected form the group consisting of amino acid sequences that have at least 80% sequence identity to SEQ ID NO: 4 or SEQ ID NO: 7, and having GS catalytic activity.
  2. 2. The transgenic plant of claim 1, wherein the GS transgene is a GS1 transgene.
  3. 3. The transgenic plant according to claim 1, wherein the GPT and GS transgenes are incorporated into the genome of the plant.
  4. 4. The transgenic plant according to any one of claims 1 -3, wherein the transgenic plant is a monocotyledonous plant.
  5. 5. The transgenic plant according to any one of claims 1-3, wherein the transgenic plant is a dicotyledonous plant.
  6. 6. The transgenic plant according to any one of claims 1 -5, wherein the GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 11; SEQ ID NO: 13; SEQ ID NO:
  7. 15, SEQ ID NO: 17; SEQ ID NO: 19, and SEQ ID NO: 21, and the polypeptide has GPT catalytic activity.
    7. The transgenic plant according to any one of claims 1 -6, wherein the GS transgene encodes a polypeptide having an amino acid sequence selected form the group consisting of SEQ ID NO: 4 and SEQ ID NO: 7 from residue 11, and the polypeptide has GS catalytic activity.
    8. The transgenic plant according to any one of claims 1 -5 or 7, wherein the GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of SEQ ID NO: 2; SEQ ID NO: 9; and SEQ ID NO: 19, and the polypeptide has GPT catalytic activity.
    9. The transgenic plant according to any one of claims 1 -8, wherein said GPT transgene is operably linked to a plant promoter having preferred expression in photosynthetic plant tissues.
    10. The transgenic plant according to any one of claims 1 -8, wherein said GPT transgene includes a plant promoter, wherein the plant promoter is a cauliflower mosaic virus 35S ribosomal promoter.
    11. The transgenic plant according to any one of claims 1 -8, wherein said GPT transgene and said GS transgene are operably linked to a plant promoter having preferred expression in photosynthetic plant tissues.
    12. The transgenic plant according to any one of claims 1-11 or a progeny thereof which displays at least one of the following increased growth characteristics: an increased growth rate, increased biomass yield, increased seed yield, increased flower or flower bud yield, increased fruit or pod yield, larger leaves, increased GPT activity, increased GS activity, increased nitrogen use efficiency, and increased tolerance to salt or saline conditions when compared to an analogous wild-type or untransformed plant.
    13. The transgenic plant according to any one of claims 1 -12 or a progeny thereof, wherein the transgenic plant or the progeny thereof has an increased leaf-to-root ratio of 2-oxo-glutaramate in comparison to an analogous wild type or untransformed plant.
    14. The transgenic plant according to any one of claims 1-13 or a progeny thereof, wherein the transgenic plant or the progeny thereof has an increased leaf-to-root ratio of GPT activity in comparison to an analogous wild type or untransformed plant.
    15. The transgenic plant according to any one of claims 1 -14 or a progeny thereof, wherein the transgenic plant or the progeny thereof has an increased leaf-to-root ratio of GS activity in comparison to an analogous wild type or untransformed plant.
  8. 16. The transgenic plant according to any one of claims 1 -15 or a progeny thereof, wherein the transgenic plant is a tobacco plant, a tomato plant, a pepper plant, a bean plant, a cowpea plant, an alfalfa plant, a cantaloupe plant, a pumpkin plant, or a Camelina plant.
  9. 17. A progeny of any generation of the transgenic plant according any one of claims 1 -16, wherein said progeny comprises said GPT transgene and said GS transgene.
  10. 18. A seed of any generation of the transgenic plant according to any one of claims 1 -16, wherein said seed comprises said GPT transgene and said GS transgene.
  11. 19. A method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plant cells with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of transgenic plants by: introducing a glutamine phenylpyruvate transaminase (GPT) transgene into plant cells, wherein the GPT transgene encodes for a polypeptide having GPT catalytic activity, and introducing a glutamine synthetase (GS) transgene into the plant cells, wherein the GS transgene encodes for a polypeptide having GS catalytic activity, growing a plurality of transgenic plants from the plant cells transformed with the GPT and GS transgenes; (b) expressing the GPT transgene and the GS transgene in the plurality of transgenic plants or the progeny thereof, wherein said transgenic plants and said progeny produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species; and (c) selecting from said plurality of transgenic plants or said progeny a transgenic plant having at least one increased growth characteristic relative to a wild type or untransformed plant of the same species.
  12. 20. A method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of transgenic plants by: introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a plurality of plants and introducing a glutamine synthetase (GS) transgene into the plurality of plants or progeny thereof, or introducing a GS transgene into the plurality of plants and introducing a GPT transgene into the plurality of plants or progeny thereof; (b) expressing the GS transgene and the GPT transgene in the plurality of transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; and, (c) selecting one of said plurality of transgenic plants having at least one increased growth characteristic and produces more 2-oxo-glutaramate relative to an analogous wild type or untransformed plant.
  13. 21. A method for generating transgenic plants having increased production of 2-oxo-glutaramate by transforming plant cells with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a first plurality of plant cells and generating a first plurality of transgenic plants from said first plurality of plant cells; (b) introducing a glutamine synthetase (GS) transgene into a second plurality of plant cells and generating a second plurality of transgenic plants from said second plurality of plant cells; (c) selecting a first plant from the first plurality of transgenic plants or the progeny thereof, said plant comprising the GPT transgene; and (d) selecting a second plant from the second plurality of transgenic plants or the progeny thereof, said second plant comprising the GS transgene; and (e) crossing the first and second plants to produce a plurality of double transgenic plants, and selecting progeny comprising both transgenes and having increased production of 2-oxo-glutaramate and at least one increased growth characteristic relative to an analogous wild type or untransformed plant.
  14. 22. A method for generating transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a double transgenic plant having a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene, wherein the GPT and GS transgenes are each linked to a plant promoter and the GPT transgene is an exogenous GPT gene from a plant; and (b) expressing the GS transgene and the GPT transgene in the double transgenic plant or the progeny thereof, wherein the polypeptide formed by the expression of the GS transgene has GS catalytic activity, and the polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; and wherein said double transgenic plant and the progeny thereof produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species.
  15. 23. A method for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of double transgenic plants by introducing a glutamine phenylpyruvate transaminase (GPT) transgene into a plurality of plants, and introducing a glutamine synthetase (GS) transgene into the plurality of plants or a progeny thereof; (b) expressing the GPT transgene and the GS transgene in the plurality of double transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; and (c) selecting one of said plurality of double transgenic plants having an increased biomass yield relative to a wild type or untransformed plant of the same species; wherein said selected double transgenic plant and the progeny thereof produce more 2-oxo-glutaramate relative to a wild type or untransformed plant of the same species.
  16. 24. A method of for generating and selecting transgenic plants having increased production of 2-oxo-glutaramate by transforming plants with transgenes that encode enzymes in the synthesis pathway for 2-oxo-glutaramate to thereby increase at least one growth characteristic of the transgenic plants relative to an analogous wild type or untransformed plant, comprising: (a) generating a plurality of double transgenic plants by introducing a glutamine phenylpyruvate transaminase (GPT) transgene and a glutamine synthetase (GS) transgene into a plurality of plants; (b) expressing the GS transgene and the GPT transgene in the plurality of double transgenic plants or the progeny thereof, wherein a polypeptide formed by the expression of the GS transgene has GS catalytic activity, and a polypeptide formed by the expression of the GPT transgene has GPT catalytic activity; (c) selecting a double transgenic plant from the plurality of double transgenic plants having at least one increased growth characteristic relative to a wild type or untransformed plant of the same species; and, (d) harvesting seeds from said plant and selecting a seed that demonstrates increased germination in high salt conditions.
  17. 25. A progeny of a transgenic plant produced according to the method of any one of claims 19-24, wherein said progeny includes the GPT and GS transgenes.
  18. 26. A seed of any generation of a transgenic plant produced according to the method of any one of claims 19-24, wherein said seed includes the GPT and GS transgenes.
  19. 27. The method according to any one of claims 19-24, further comprising harvesting a seed from the transgenic plant, wherein the seed includes the GPT and GS transgenes.
  20. 28. The method according to any one of claims 27, further comprising propagating a plant from the harvested seed, wherein the propagated plant includes the GPT and GS transgenes.
  21. 29. The method according to any one of claims 19-24, wherein the GS transgene is a GS1 transgene.
  22. 30. The transgenic plant according to claim 1 or produced according to the method of any one of claims 19-24, wherein the GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 11; SEQ ID NO: 13; SEQ ID NO: 15, SEQ ID NO: 17; SEQ ID NO: 19, and SEQ ID NO: 21; and amino acid sequences that have at least 80% sequence identity to any one of SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 11; SEQ ID NO: 13; SEQ ID NO: 15; SEQ ID NO: 17; SEQ ID NO: 19, and SEQ ID NO: 21, wherein the polypeptide has GPT catalytic activity.
  23. 31. The method according to any one of claims 19-28 and 30, wherein the GS transgene encodes a polypeptide having an amino acid sequence selected form the group consisting of SEQ ID NO: 4 and SEQ ID NO: 7 from residue 11, and amino acid sequences that have at least 80% sequence identity to any one of SEQ ID NO: 4 and SEQ ID NO: 7, wherein the polypeptide has GS catalytic activity.
  24. 32. The method according to any one of claims 19-28 and 31, wherein the GPT transgene encodes a polypeptide having an amino acid sequence selected from the group consisting of SEQ ID NO: 2; SEQ ID NO: 9; and SEQ ID NO: 19, and the polypeptide has GPT catalytic activity.
  25. 33. The method according to any one of claims 19-32, wherein the GPT and GS transgenes are incorporated into the genome of the plant.
  26. 34. The method according to any one of claims 19-33, wherein the transgenic plant is a monocotyledonous plant.
  27. 35. The method according to any one of claims 19-33, wherein the transgenic plant is a dicotyledonous plant.
  28. 36. The method according to any one of claims 19-35, wherein said GPT transgene is operably linked to a plant promoter having preferred expression in photosynthetic plant tissues.
  29. 37. The method according to any one of claims 19-35, wherein said GPT transgene and said GS transgene are operably linked to a plant promoter having preferred expression in photosynthetic plant tissues.
  30. 38. The method according to any one of claims 19-21 and 24-35, wherein said at least one increased growth characteristic is selected from the group consisting of an increased growth rate, increased biomass yield, increased seed yield, increased flower or flower bud yield, increased fruit or pod yield, larger leaves, increased GPT activity, increased GS activity, increased nitrogen use efficiency, and increased tolerance to salt or saline conditions when compared to an analogous wild-type or untransformed plant.
  31. 39. The method according to any one of claims 19-24, wherein the GPT transgene comprises a GPT coding sequence which hybridizes to a GPT polynucleotide which encodes a polypeptide having an amino acid sequence selected from the group consisting of (a) SEQ ID NO: 2; SEQ ID NO: 9; SEQ ID NO: 15, SEQ ID NO: 19, SEQ ID NO: 21, SEQ ID NO 24, SEQ ID NO: 30, SEQ ID NO:31, SEQ ID NO: 32, SEQ ID NO: 33, SEQ ID NO: 34, SEQ ID NO: 35 and SEQ ID NO: 36 under hybridization conditions which include hybridization in a buffer of 40% formamide, 1M NaCI, 1% SDS at 37s C, and at least one wash in 0.2 X SSC at a temperature of at least about 50e C, for 20 minutes.
  32. 40. The method according to any one of claims 19-39, wherein the transgenic plant or the progeny thereof has an increased leaf-to-root ratio of 2-oxo-glutaramate in comparison to an analogous wild type or untransformed plant.
  33. 41. The method according to any one of claims 19-40, wherein the transgenic plant or the progeny thereof has an increased leaf-to-root ratio of GPT activity in comparison to an analogous wild type or untransformed plant.
  34. 42. The method according to any one of claims 19-41, wherein the transgenic plant or the progeny thereof the transgenic plant has an increased leaf-to-root ratio of GS activity in comparison to an analogous wild type or untransformed plant.
  35. 43. The method according to any one of claims 19-42, wherein the transgenic plant is a tobacco plant, a tomato plant, a pepper plant, a bean plant, a cowpea plant, an alfalfa plant, a cantaloupe plant, a pumpkin plant, or a Camelina plant.
  36. 44. The method according to any one of claims 19-35 or 38-43, wherein said GPT transgene includes a plant promoter, wherein the plant promoter is a cauliflower mosaic virus 35S ribosomal promoter.
  37. 45. The method according to any one of claims 19-24, wherein the GPT transgene is an exogenous GPT gene from a plant.
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