AU2005222730A1 - Method for preparing compounds comprising cucurbituril groups - Google Patents

Method for preparing compounds comprising cucurbituril groups Download PDF

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AU2005222730A1
AU2005222730A1 AU2005222730A AU2005222730A AU2005222730A1 AU 2005222730 A1 AU2005222730 A1 AU 2005222730A1 AU 2005222730 A AU2005222730 A AU 2005222730A AU 2005222730 A AU2005222730 A AU 2005222730A AU 2005222730 A1 AU2005222730 A1 AU 2005222730A1
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Australia
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group
formula
compound
groups
independently selected
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AU2005222730A
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Anthony Ivan Day
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NewSouth Innovations Pty Ltd
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NewSouth Innovations Pty Ltd
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Priority claimed from AU2004901473A external-priority patent/AU2004901473A0/en
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Priority to AU2005222730A priority Critical patent/AU2005222730A1/en
Priority claimed from PCT/AU2005/000396 external-priority patent/WO2005090351A1/en
Publication of AU2005222730A1 publication Critical patent/AU2005222730A1/en
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Description

WO 2005/090351 PCT/AU2005/000396 METHOD FOR PREPARING COMPOUNDS COMPRISING CUCURBITURIL GROUPS FIELD OF THE INVENTION 5 The present invention relates to a method for preparing compounds comprising a plurality of cucurbituril groups. BACKGROUND TO THE INVENTION Cucurbiturils are a class of macrocyclic compounds based 10 on oligomers of glycoluril or glycoluril analogues. "Cucurbituril" is the name given to the cyclic oligomer formed by linking six (6) glycoluril molecules via methylene bridges. However, the term "cucurbituril" has 15 also been used, and is used in this specification, to refer to a class of compounds. To avoid confusion, the compound cucurbituril is referred to in this specification as "unsubstituted cucurbit[6]uril". 20 Unsubstituted cucurbit[6]uril was first described in the literature in 1905 in a paper by R. Behrend, E. Meyer and F. Rusche, Leibigs Ann. Chem., 339, 1, 1905. The macrocyclic structure of unsubstituted cucurbit[6]uril was first described in 1981 by W.A. Freeman et. al., 25 "Cucurbituril", J. Am. Chem. Soc., 103 (1981), 7367-7368. Unsubstituted cucurbit[6]uril has a chemical formula of
C
3 6H36N24012 and is a macrocyclic compound having a central cavity. 30 The substituted cucurbituril decamethylcucurbit[5]uril was first synthesised and identified in 1992 by Flinn et. al., Angew. Chem. Int. Ed. Engl., 1992, 31, 1475. Various unsubstituted and substituted cucurbit[4 to 35 12]urils and methods for preparing unsubstituted and substituted cucurbit[4 to 12]urils are described in the applicant's international patent application No.
WO 2005/090351 PCT/AU2005/000396 -2 PCT/AU00/00412 (WO -00/68232), incorporated herein by reference. A class of cucurbit[4 to 20]urils and methods for 5 preparing this class of cucurbit[4 to 20]urils are also described in US patent no. 6,365,734. Cucurbit[n]urils comprise a rigid central cavity with two portals to the central cavity. These portals are 10 surrounded by polar groups and are narrower in diameter than the internal diameter of the central cavity. Various cucurbituril analogues have also recently been described (for example, in Lagona J. et al 15 "Cucurbit[nluril Analogues", Organic Letters, 2003, Vol 5, No. 20, 3745-3747). These analogues have a similar macrocyclic structure to cucurbit[n]urils and form complexes with other compounds in a similar manner to cucurbit[nlurils. Like cucurbit[nlurils, cucurbituril 20 analogues comprise a rigid central cavity with two portals to the central cavity, the portals being surrounded by polar groups and having a narrower diameter than the internal diameter of the central cavity. 25 Cucurbit[4 to 12]urils and cucurbituril analogues selectively complex various molecules. For example, the central cavity of a cucurbit[4 to 12]uril or a cucurbituril analogue selectively encapsulates gases and volatile molecules. Cucurbit[4 to 12]urils and 30 cucurbituril analogues can also selectively form complexes with molecules at the polar ends of the central cavity. Cucurbit[4 to 12]urils and cucurbituril analogues can be used to form complexes with, and then later release, 35 gases, volatiles, and other molecules. These properties give cucurbit[4 to 12]urils and cucurbituril analogues a wide variety of uses. These uses include for example: WO 2005/090351 PCT/AU2005/000396 -3 " entrapment and removal of pollutants, " use as odourisers, releasing fragrances slowly over time, " to trap unpleasant odours or toxic vapours, and " chemical purification or separation techniques, for 5 example, in chromatographic columns. These uses of cucurbiturils and cucurbituril analogues involve forming a complex of the cucurbituril or cucurbituril analogue with another molecule. Typically 10 the complex is formed by contacting the cucurbituril or cucurbituril analogue with the molecule by moving a gas or liquid containing the molecule past the cucurbituril or cucurbituril analogue. However, in many cases, some of the cucurbituril or cucurbituril analogue molecules are 15 lost during this process, either by being physically blown or washed away by the movement of the gas or liquid past the cucurbituril or cucurbituril analogue or by the cucurbituril or cucurbituril analogue dissolving in the liquid and being washed away with the liquid. 20 SUMMARY OF THE INVENTION The present inventor has sought to develop a method for preparing compounds comprising multiple (two or more) 25 cucurbituril groups. A compound comprising multiple cucurbituril groups is, due to the size of the compound, generally less susceptible to being physically blown or washed away by the movement of a gas or liquid than a smaller cucurbituril or cucurbituril analogue molecule 30 comprising a single cucurbituril group. Further, because of the high molecular weight of such a compound, if the compound dissolves in a liquid, an artificial or biological membrane or film can be used to retain the compound in a given environment in the liquid. 35 A compound comprising a plurality of cucurbituril groups can be prepared by preparing cucurbiturils or cucurbituril WO 2005/090351 PCT/AU2005/000396 -4 analogues and then linking the cucurbiturils or cucurbituril analogues using reactions known in the art for linking organic molecules. For example, two cucurbiturils or cucurbituril analogues may be linked by a 5 condensation reaction between appropriate substituents on the cucurbiturils or cucurbituril analogues. However, this process involves the step of first forming the cucurbiturils or cucurbituril analogues and then the separate step of linking the formed cucurbiturils or 10 cucurbituril analogues. It would be advantageous to provide an alternative method for preparing compounds comprising a plurality of cucurbituril groups. 15 The present inventor has now found an alternative method for preparing compounds comprising a plurality of cucurbituril groups. 20 In one aspect, the present invention provides a method for preparing a compound comprising a plurality of cucurbituril groups, the method comprising the steps of: (a) forming a mixture comprising one or more compounds of 25 the formula (1) A-L-A (1) wherein 30 L is a linking group; and each A is independently selected and is a group of the formula (A) 35 WO 2005/090351 PCT/AU2005/000396 -5
R
3
R
6
R
3 R7 N N N N R9 R1 R2 R' R2 RS N N N N R4 R8
R
10
R
3 R R 3 (A) 5 wherein: for each unit of the formula (B)
R
3 N N RI R2 N N 10 (B) in formula (A), R1 and R 2 may be the same or different, and are each independently selected from a bond with L or 15 a univalent radical, or R', R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, or WO 2005/090351 PCT/AU2005/000396 -6 R of one unit of the formula (B) and R 2 of an adjacent unit of the formula (B) together form a bond or a divalent radical, and 5 each R 3 is independently selected from the group consisting of =0, =S, =NR', =CXZ, =CZR', =CXR" and
=CZ
2 , wherein Z is an electron withdrawing group, R' is selected from the group consisting of a bond with L, H, an optionally substituted straight chain, 10 branched or cyclic, saturated or unsaturated hydrocarbon radical, or an optionally substituted heterocyclyl radical, and R" is a bond with L; and each R 6 is independently selected from the group consisting 15 of a bond with L, H, alkyl and aryl;
R
7 and R 8 may be the same or dif f erent and are independently selected from the group consisting of H and
-CHR
6 OR , or R 7 and R 8 together form the group -CHR 6 -0-CHR 6 20 , where each R 6 is independently selected from the group consisting of a bond with L, H, alkyl and aryl;
R
9 and R1 0 may be the same or different and are independently selected from the group consisting of H and 25 -CHR ORG , or R9 and R together form the group -CHR -0-CHRG , where each R 6 is independently selected from the group consisting of a bond with L, H, alkyl and aryl; and x is 0 or an integer from 1 to 10, typically x is 0, 1, 2, 30 3 or 4; provided that at least one R', R 2 or R 6 is a bond with L or at least one R 3 is =NR", =CZR" or =CXR" where R" is a bond with L; 35 and an acid; and (b) exposing the mixture to conditions effective for at WO 2005/090351 PCT/AU2005/000396 -7 least some of the groups A to react to form cucurbituril groups, thereby forming a compound comprising a plurality of cucurbituril groups. 5 R 1 and R 2 may be the same or different in different units of the formula (B) in formula (A). Z may for example be -N02, -CO 2 R, -COR or -CX 3 , wherein X is halo and R is H, an optionally substituted straight 10 chain, branched or cyclic, saturated or unsaturated hydrocarbon radical or an optionally substituted heterocyclyl radical. Typically each R6 in formula (A) is H, alkyl or aryl, more 15 typically H. Typically R 3 is =0. In some embodiments, the mixture further comprises one or more compounds capable of linking two groups A ("an Additional Compound"). Typically, in such embodiments, at 20 least some of the cucurbituril groups are formed from a group A of one molecule of the formula (1), a group A of another molecule of the formula (1) and one or more of the Additional Compounds. 25 The Additional Compound may be a compound of formula (2) or formula (6) as defined below. Typically, the Additional Compound is a compound of the formula (2): WO 2005/090351 PCT/AU2005/000396 -8 R3 R5 R 3 R1 N N N N R13 R1 R2 R1 / R2 R12' N N N N R1 (2) wherein for each unit of the formula (B) 5
R
3 N N R1 R2 N N
R
3 (B) in the compound, RI and R 2 may be the same or different, and 10 are each a univalent radical, or R', R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, or
R
1 of one unit of the formula (B) and R 2 of an adjacent unit of the formula (B) together form a bond or a divalent 15 radical, and each R3 is independently selected from the group consisting WO 2005/090351 PCT/AU2005/000396 -9 of =0, =S, =NR, =CXZ, =CRZ and =CZ 2 , wherein Z is an electron withdrawing group such as -NO 2 , -CO 2 R, -COR or CX 3 , X is halo, and R is H, an optionally substituted straight chain, branched or cyclic, saturated or 5 unsaturated hydrocarbon radical, or an optionally substituted heterocyclyl radical; each R 5 is independently selected from the group consisting of H, alkyl and aryl; 10
R
1 1 and R 12 may be the same or different and are independently selected from the group consisting of H and -CHR'OR', or R" and R1 2 together form the group -CHR 5 -0
CHR
5 -, where each R 5 is independently selected and is as 15 defined above,
R
13 and R 14 may be the same or different and are independently selected from the group consisting of H and -CHR5OR', or R" and R'- together form the group -CHR 5 -0 20 CHR 5 -, where each R is independently selected and is as defined as above; and y is 0 or an integer from 1 to 9; typically y is 0, 1 or 2. 25 RI and R 2 may be the same or different in different units of the formula (B) in formula (2). Typically R 5 is H. Typically R 3 is =0. 30 In some embodiments of the present invention, the Additional Compound is a bis-hydrazine compound of the formula (6): O O N N'R1 R12. N: X / - NR14 O O WO 2005/090351 PCT/AU2005/000396 - 10 (6) wherein R , R , R3 and R1 are as defined above for formula (2) ; typically R 1 3 to R are each H. 5 If the groups A in the compound or compounds of formula (1) in the mixture on average comprise one to two units of the formula (B), the mixture typically comprises one or more Additional Compounds. 10 Step (b) of the method of the present invention typically comprises heating the mixture to a temperature of from 20 0 C to 120 0 C. 15 In some embodiments of the present invention, step (b) further comprises contacting the one or more compounds of formula (1) with a compound that can form bridges between groups A, or between a group A and an Additional Compound. Typically the one or more compounds of the formula (1) is 20 contacted with such a compound by incorporating the compound into the mixture comprising the one or more compounds of the formula (1) and the acid. Typically the compound that can form bridges between 25 groups A, or between a group A and an Additional Compound, is a compound of the formula R 5 COR5 where R 5 is as defined above and each R 5 is independently selected, a compound of the formula R 5 OC(R9) 2 0R 5 where R 5 is as defined above and each R 5 is independently selected, trioxane, optionally 30 substituted 3,4-dihydropyran or optionally substituted 2,3-dihydrofuran. These compounds are capable of forming bridges of the formula -CHR 5 - between groups A, and between a group A and a compound of formula (2) or (6). As will be apparent to a person skilled in the art, these 35 compounds form bridges of the formula -CHR 5 - between groups A, and between a group A and a compound of formula (2) or (6), by reaction with, or replacement of, the groups R 7 to WO 2005/090351 PCT/AU2005/000396 - 11 R to form bridges of the formula -CHR 5 - bound to the nitrogen atoms to which R 7 to R 1 4 were bound. As will be apparent to a person skilled in the art, in 5 some embodiments of the invention, it is not necessary to include a compound that can form bridges between groups A, or between a group A and an Additional Compound, in the mixture in order to form cucurbituril groups in step (b) of the method of the present invention. For example, if 7 8 9 10 11 12 134 10 all the groups R , R , R , R , R , R , R3 and R 1 in the compounds of formula (1) and the Additional Compounds of formula (2) or (6), if any, in the mixture are other than H, the groups A can react with each other and with the Additional Compounds of formula (2) and (6), if any, in 15 step (b) of the method of the present invention to form cucurbituril groups without the presence of such a compound. However, if all of the groups R 7 , R, R, R', R", R 12 , R 13 and R1 4 are H, then such a compound must be included in the mixture in order for the groups A to react 20 with each other and with the Additional Compounds of formula (2) or (6), if any, to form cucurbituril groups in step (b) of the method. Typically, if the molar ratio of the groups R 7 , R, R 9 , R 10 , 25 R', R', RR and R 14 in the compounds of formula (1), (2) and (6) in the mixture which are H to those which are not H is greater than 1, then a compound that can form bridges between groups A, and between a group A and a compound of formula (2) or (6), is included in the mixture. 30 The mixture comprising the one or more compounds of formula (1) and the acid may be prepared by adding the one or more compounds of the formula (1) to the acid and mixing. If the mixture further comprises other 35 components, such as one or more Additional Compounds or one or more compounds that can form bridges between groups A, or between a group A and an Additional Compound, the WO 2005/090351 PCT/AU2005/000396 - 12 mixture may be prepared by combining the various components of the mixture in any order. In formula (1), the linking group L can be any group 5 capable of linking two groups A. L is typically a divalent group linking two groups A. However, in some embodiments, the group L may have more than one bond to one or both of the groups A. The linking group may for example be an organic group such as a hydrocarbon chain or 10 a polymer chain, or a metal or metal complex. L is typically a polymer or other organic group. The linking group L can be as short as -CH 2 -, -0- or -NH-, or as long as a polymer chain. 15 Typically the group A is bound to the linking group L via a bond at one R' or R2 in the group A (i.e. one RT or R2 in formula (A) is a bond with L), or by a bond at both R' and
R
2 in one unit of the formula (B) in the group A (i.e. both RP and R 2 in one unit of the formula (B) in formula (A) are 20 each a bond with L). However, in some embodiments of the present invention, the group A is bound to the linking group L by a bond at R6 or R 3 (i.e. one R 6 in formula (A) is a bond with L, or one R 3 in formula (A) is =NR", =CXR" or =CZR" where R" is a bond with L) 25 In some embodiments, the linking group L comprises one or more further groups A. For example, the group L may comprise a polymer chain which is substituted by one or more groups containing groups of the formula (A). 30 In another aspect, the present invention provides a compound comprising a plurality of cucurbituril groups prepared by th.e method of the present invention.
WO 2005/090351 PCT/AU2005/000396 - 13 DEFINITIONS Having regard to the cucurbiturils described in WO 5 00/68232 and US patent no. 6,365,734 and the inventor's further work, the class of cucurbiturils is broader than that described in either of WO 00/68232 or US patent no. 6,365,734. 10 As used herein, the term "cucurbituril" refers to a compound of the formula (C): 15 20 R (C) wherein: for each unit of the formula (D): R3' R 5 N N R -R2 N N
R
3 5 25 (D) in the compound, R3 and R 2 may be the same or different, and RECTIFIED SHEET (RULE 91) ISA/AU WO 2005/090351 PCT/AU2005/000396 - 14 are each a univalent radical, or R', R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, or RI of one unit of the formula (D) and R 2 of an adjacent 5 unit of the formula (D) together form a bond or a divalent radical, each R3 is independently selected from the group consisting of =0, =S, =NR, =CXZ, =CRZ, and =CZ 2 , wherein Z is an electron withdrawing. group such as -NO 2 , -CO 2 R, -COR or 10 CX 3 , X is halo and R is H, an optionally substituted straight chain, branched or cyclic, saturated or unsaturated hydrocarbon radical, or an optionally substituted heterocyclyl radical, and each R 5 is independently selected from the group consisting 15 of H, alkyl and aryl; and n is the degree of polymerisation, that is, the number of units of the formula (D) in the compound. 20 To differentiate various cucurbiturils, the inventors have adopted the term "cucurbit[nluril", where n is the degree of polymerisation of the cucurbituril, that is, the number of units of the formula (D) in the macrocyclic ring of the cucurbituril. For example, a cucurbituril comprising 25 eight units of the formula (D) joined together would be denoted as cucurbit[8]uril. Unless otherwise specified, the terms "cucurbituril" and "cucurbit[nluril" as used herein refer to a 30 cucurbit[n]uril where n is an integer from 4 to 12. As used herein, the terms "unsubstituted cucurbituril" and "unsubstituted cucurbit[n]uril" refer to a cucurbituril in which R3 is =0, and R1, R 2 and R- are H, in all the units of 35 formula (D) in the cucurbituril. As used herein, the terms "substituted cucurbituril" and "substituted WO 2005/090351 PCT/AU2005/000396 - 15 cucurbit[nuril" refer to a cucurbituril other than an unsubstituted cucurbituril. As used herein, the term "cucurbituril analogue" refers to 5 a compound comprising a macrocyclic ring similar to the macrocyclic ring of a cucurbit[n]uril such that the macrocyclic ring comprises a rigid central cavity with two portals to the central cavity, the portals being surrounded by polar groups and having a narrower diameter 10 than the internal diameter of the central cavity, and wherein the compound is capable of forming complexes with other molecules in the same or substantially the same manner as a cucurbit[nluril. A cucurbituril analogue may for example have the basic cyclic structure of a 15 cucurbituril of the formula (C) as defined above but in which one or some, but not all, of the units of the formula (D) are replaced by another group such as a group of the formula: 0 0 R 5 N NC I I I /N /.1 NC O OR5 20 As used herein, the term "cucurbituril group" refers to the macrocyclic ring of a cucurbituril or cucurbituril analogue, the macrocyclic ring comprising a rigid central 25 cavity with two portals to the central cavity, the portals being surrounded by polar groups and having a narrower diameter than the internal diameter of the central cavity. As used herein, the term "cucurbit[nluril group" refers to 30 a cucurbituril group having the cyclic structure shown in formula (C) above, that is, that part of formula (C) excluding the groups R 1 , R 2 , R and R.
WO 2005/090351 PCT/AU2005/000396 - 16 As used herein, the term "glycoluril analogue" refers to a compound of the formula (5): R3
R
11
R
13 N N RI / R2 N N
R
1 2 IIy _1R14
R
3 (5) 5 wherein R1 and R 2 may be the same or different, and are each a univalent radical, or R , R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, 10 and R 3 and R" to R" are as defined above for formula (2). As used herein, the term "alkyl" refers to a straight chain, branched or mono- or poly-cyclic alkyl. Typically the alkyl is a C 1 to C30 alkyl, for example, a C 1 to C6 15 alkyl. Examples of straight chain and branched alkyl include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl, pentyl, iospentyl, sec-pentyl, 1,2 dimethylpropyl, 1,1-dimethylpropyl, hexyl, 4-methylpentyl, 1-methylpentyl, 2-methylpentyl, 3-methylpentyl, 1,1 20 dimethylbutyl, 2,2-dimethylbutyl, 3,3-dimethylbutyl, 1,2 dimethylbutyl, 1,3-dimethylbutyl, 1,2,2-trimethylpropyl and 1,1,2-trimethylpropyl. Examples of cyclic alkyl include cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl. 25 As used herein, the term "alkenyl" refers to a straight chain, branched or cyclic alkenyl. Typically the alkenyl is a C 2 to C 30 alkenyl, for example a C 2 to C6 alkenyl.
WO 2005/090351 PCT/AU2005/000396 - 17 Examples of alkenyl include vinyl, allyl, 1-methylvinyl, butenyl, isobutenyl, 3-methyl-2-butenyl, 1-pentenyl, cyclopentenyl, 1-methylcyclopentenyl, 1-hexenyl, 3 hexenyl, cyclohexenyl, 1-heptenyl, 3-heptenyl, 1-oct.enyl, 5 cyclooctenyl, 1-nonenyl, 2-nonenyl, 3-nonenyl, 1-decenyl, 3-decenyl, 1,3-butadienyl, 1,4-pentadienyl, 1,3 cyclopentadienyl, 1,3-hexadienyl, 1,4-hexadienyl, 1,3 cyclohexadienyl, 1,4-cyclohexadienyl, 1,3 cycloheptadienyl, 1,3,5-cycloheptatrienyl and 1,3,5,7 10 cyclooctatetraenyl. As used herein, the term "alkynyl" refers to a straight chain, branched or cyclic alkynyl. Typically the alkynyl is a C 2 to C 30 alkynyl, for example, a C 2 to C6 alkynyl. 15 As used herein, the term "aryl" refers to a radical of a single, polynuclear, conjugated or fused aromatic hydrocarbon or aromatic heterocyclic ring system. Examples of aryl include phenyl, naphthyl and furyl. When 20 the aryl comprises a heterocyclic aromatic ring system, the heterocyclic aromatic ring system may contain 1 to 4 heteroatoms independently selected from N, 0 and S. DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS 25 As will be apparent to a person skilled in the art, in formulas (1) and (2), R 1 and R 2 can be any group that does not prevent the groups A in the one or more compounds of formula (1) reacting to form cucurbituril groups in step 30 (b) of the method of the present invention. The present invention is not limited to methods where R 1 and R 2 are particular groups. In formulas (1), (2) and (5), when R' or R 2 is a univalent 35 radical, the univalent radical is typically -R, -OR, -NR 2 where each R is independently selected, -NO 2 , -CN, -X, WO 2005/090351 PCT/AU2005/000396 - 18 0 II -COR, -COX, -COOR, -CR 2 where each R is independently NR 5 11 selected, -C-R where each R is independently selected, -SeR, -SiR 3 where each R is independently selected, -SR, 10 0 -SOB., -s-O-R, -SO 2 R, -S-S-R, -BR 2 where each R is 15 independently selected, -PR 2 where each R is independently selected, o 0 -P-0-R where each R is independently selected, -P-NR 2 20 OR
NR
2 where each R is independently selected, -P-BR 2 where each R is independently selected, or a metal or metal complex, 25 wherein R is H, an optionally substituted straight chain, branched or cyclic, saturated or unsaturated hydrocarbon radical, or an optionally substituted heterocyclyl radical, and X is halo. 30 When R or R 2 is a univalent radical, the univalent radical may for example be H, an optionally substituted alkyl (e.g. methyl, ethyl, propyl, isopropyl, n-butyl, sec butyl, isobutyl, tert-butyl, etc), optionally substituted alkenyl, optionally substituted alkynyl, optionally 35 substituted heterocyclyl or optionally substituted aryl (e.g. phenyl, naphthyl, pyridyl, furanyl, thiophenyl or pyrazolyl), -OR, -SR or -NR 2
.
WO 2005/090351 PCT/AU2005/000396 - 19 In some embodiments, R' or R2 is a univalent radical comprising less than 30 carbon atoms. The univalent radical may for example be a C1 to C 3 0 alkyl, C 2 to C 3 0 5 alkenyl, a cyclic hydrocarbon group comprising 5 to 30 carbon atoms, an aliphatic cyclic group comprising 4 to 30 carbon atoms with one or more heteroatoms such as 0, N or S, an aryl group comprising 6 to 30 carbon atoms and no heteroatoms, or a heteroaryl group comprising 5 to 30 10 carbon atoms with one or more hetero atoms such as 0, N or S. R or R2 may for example be an alkoxy group such as methoxy, ethoxy, propyloxy etc. R1 or R2 may also be a 15 hydroxy, halo, cyano, nitro, amino, alkylamino or alkylthio radical. Examples of optionally substituted cyclic groups formed by R', R 2 and the carbon atoms to which they are bound, 20 include optionally substituted saturated or unsaturated cyclic hydrocarbon groups comprising 5 to 30 carbon atoms, and optionally substituted saturated or unsaturated cyclic groups comprising 3 to 30, typically 4 to 30, carbon atoms with one or more heteroatoms such as 0, N or S. The 25 optionally substituted cyclic group may comprise two or more fused rings. The divalent radical which may link R' and R 2 of adjacent units of the formula (B) in formula (A), adjacent units of 30 the formula (B) in formula (2), or adjacent units of the formula (D) in a cucurbit[nluril, may, for example, be a divalent optionally substituted straight chain or branched, saturated or unsaturated hydrocarbon radical comprising 1 or more carbon atoms. The divalent radical 35 may consist of or contain one or more heteroatoms such as 0, N or S.
WO 2005/090351 PCT/AU2005/000396 - 20 When R or R'is an optionally substituted hydrocarbon radical or an optionally substituted heterocyclyl radical, R or R'may, for example, be an optionally substituted alkyl, an optionally substituted alkenyl, an optionally 5 substituted alkynyl or an optionally substituted aryl. When R or R'is an optionally substituted hydrocarbon radical or an optionally substituted heterocyclyl radical, the hydrocarbon radical or the heterocyclyl radical may be 10 substituted by one or more substituents. Similarly, when R , R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, the cyclic group may be substituted by one or more substituents. The optional substituents can be any group 15 and may for example be an optionally substituted alkyl, an optionally substituted alkenyl, an optionally substituted alkynyl, an optionally substituted heterocyclyl, an optionally substituted aryl, halo (F, Cl, Br or I), hydroxyl, alkoxyl, carbonyl, acyl halide, nitro, 20 carboxylic acid, carboxylic acid ester, amino, imino, cyano, isocyanate, thiol, thiol-ester, thio-amide, thio urea, sulfone, sulfide, sulfoxide or sulfonic acid group or a metal or metal complex. The optional substituent may also be a borane, a phosphorous containing group such as a 25 phosphine, alkyl phosphine, phosphate or phosphoramide, a silicon containing group or a selenium containing group. Typically Z is -NO 2 , -CO 2 R, -COR or -CX 3 , where X is halo (F, Cl, Br or I) and R is H, alkyl, alkenyl, alkynyl, 30 aryl, heteroaryl or saturated or unsaturated heterocyclyl. In some embodiments of the present invention, R 3 is =0 and
R
5 is H in all the units of formula (B) in the compounds of formulas (1) and (2). 35 The group L may be any group capable of linking two groups A. L is typically a divalent organic group. In some WO 2005/090351 PCT/AU2005/000396 - 21 embodiments L is a polymer. In some embodiments L is a group of the f formula - (CR 2 ) a- (E- (CR 2 ) b-) , (CR 2 ) d- or - (CR2) (E- (CR=~CR) b-) c (CR 2 ) d wherein: 5 E is -0-, -NR-, -S-, a saturated or unsaturated divalent hydrocarbon radical, or an optionally substituted aliphatic or aromatic divalent heterocyclyl group; R is as defined above for formula (2); and a, b, c and d are each 0 or an integer from 1 to 30, 10 provided that not all of a, b, c and d are 0. For example, L may be a group of the formula -(CR 2 )a-, -(CR=CR)a- or -(NR)a where R is as defined above, and a is an integer from 1 to 30. When E is an optionally substituted heterocyclyl 15 radical, the heterocyclyl radical may be optionally substituted by one or more substituents. The optional substituents can be any group and may for example be an optionally substituted alkyl, an optionally substituted alkenyl, an optionally substituted alkynyl, an optionally 20 substituted heterocyclyl, an optionally substituted aryl, halo (F, Cl, Br or I), hydroxyl, alkoxyl, carbonyl, acyl halide, nitro, carboxylic acid, carboxylic acid ester, amino, imino, cyano, isocyanate, thiol, thiol-ester, thic amide, thio-urea, sulfone, sulfide, sulfoxide or sulfonic 25 acid group or a metal or metal complex. The optional substituent may also be a borane, a phosphorous containing group such as a phosphine, alkyl phosphine, phosphate or phosphoramide, a silicon containing group or a selenium containing group. 30 L may, for example, be -CH 2 -, -(CH 2 )n-, -(CH=CH)n-, -O-, NH-, -CH 2 -NH-, -CH (CH 3 ) (CH 2 ) nCH (CH 3 ) - or - (CH 2 ) n-N (CH3) CH 2
CH
2 N (CH 3 ) - (CH2) P-, where n and p are an integer, for example an integer from 35 1 to 30, such as 1, 2,,3, 4, 5, 6, 7 etc. L may also be an organometallic group such as WO 2005/090351 PCT/AU2005/000396 - 22 -CH 2 Si(R) 2
CH
2 - where R is H, an optionally substituted straight chain, branched or cyclic, saturated or unsaturated hydrocarbon radical or an optionally substituted heterocyclyl radical. In some embodiments, L 5 is, or comprises, a metal atom and the compound of the formula (1) is a metal complex. In preferred embodiments, the Additional Compound is a compound of formula (2). As will be apparent to a person 8 9 10 11 12 10 skilled in the art, if the groups R 7 , R8, R , R , R , R , R and R1 in the compounds of formula (1) and (2) in the mixture are other than hydrogen, the groups A can react with each other and with the compounds of formula (2) to form cucurbituril groups in step (b) of the method without 15 the presence of a compound that can form bridges between groups A, and between a group A and a compound of formula (2). However, if all of these groups are H, or if, in the groups A and the compound or compounds of formula (2) that are to form the cucurbituril group, the total number of 20 these groups which are H is greater than the total number which are not H, then a compound that can form bridges between groups A, and between a group A and a compound of formula (2), must be included in the mixture in order for the groups A, and the one or more compounds of formula 25 (2), to form the cucurbituril group in step (b) of the method. The compound that can form bridges between groups A, and between a group A and a compound of formula (2) or (6), is 30 typically selected from the group consisting of compounds of the formula R 5
COR
5 wherein each R9 is independently selected from the group consisting of H, alkyl and aryl, compounds of the formula R'OC(R 5
)
2 0R 5 wherein each R5 is independently selected from the group consisting of H, 35 alkyl and aryl, trioxane, optionally substituted 3,4 dihydropyran and optionally substituted 2,3-dihydrofuran. The optionally substituted 3,4-dihydropyran or optionally WO 2005/090351 PCT/AU2005/000396 - 23 substituted 2,3-dihydrofuran may be substituted by groups such as alkyl, alkenyl, alkynyl, aryl or halo. The compound of the formula R 5 COR' may, for example, be formaldehyde. 5 Typically the mixture further comprises a templating compound. As used herein, the term "templating compound" refers to a compound that affects the relative amount of different sized cucurbituril groups formed in the method 10 of the present invention. For example a templating compound when added to the mixture, may alter the ratio of, say, cucurbit[5]uril groups to cucurbit[6]uril groups, when that ratio is compared with that ratio of cucurbit[5]uril groups to cucurbit[6]uril groups that is 15 formed using a mixture not containing a templating compound or containing a different templating compound, but otherwise reacted under identical conditions. Typically, the templating compound is a salt. However, it 20 has been found that many other compounds can also act as a templating compound. Any compound that can alter the ratio of different sized cucurbituril groups formed in the method of the present 25 invention can be used as the templating compound. The templating compound may be an organic compound, a salt of an organic compound, or an inorganic compound. Suitable compounds that may be used as a templating compound include ammonium chloride, lithium chloride, sodium 30 chloride, potassium chloride, rubidium chloride, caesium chloride, ammonium bromide, lithium bromide, sodium bromide, potassium bromide, rubidium bromide, caesium bromide, lithium iodide, sodium iodide, potassium iodide, -rubidium iodide, caesium iodide, potassium sulfate, 35 lithium sulfate, tetrabutylammonium chloride, tetraethylammonium chloride, o-carborane, thioacetamide, N-(1-napthyl) ethylenediamine, 2,2'-biquinoline, p- WO 2005/090351 PCT/AU2005/000396 - 24 bromoanaline, taurine, blue tetrazolium, 2-amino-3-methyl benzoic acid, indol-3-aldehyde, cystine, 4 acetamidoaniline, p-aminophenol, acetamide, 4 aminoacetophenone, 4-dimethylaminobezaldehyde, 2 5 aminobenzimadazol, bis-(4,4'-bipyridyl)-o,' -xylene, red phosphorus, and lithium p-toluenesulfonate. The present inventor believes that a large number of other compounds could be suitable for use as templating compounds and therefore the above list should not be considered to be 10 exhaustive. The anions of the acid may also be considered to be a templating compound. The templating compounds may be added singly to the reaction mixture, or two or more templating compounds may 15 be added to the reaction mixture. If a salt is used as the templating compound, the salt is preferably a metal halide, ammonium halide, metal sulphate or metal tosylate. It is preferred that the anion of the 20 salt corresponds to the anion of the acid used. For. example, where the acid used is hydrochloric acid, a metal chloride or ammonium chloride is a preferred salt. Similarly, iodide-containing salts are preferably used where hydriodic acid is the acid, and bromide-containing 25 salts are preferably used where hydrobromic acid is used. The acid is preferably a strong mineral acid or a strong organic acid. In principle, any acid can be used. The acid acts to catalyse the reactions taking place. 30 Preferred acids include sulfuric acid, hydrochloric acid, hydrobromic acid, hydriodic acid, deuterated sulfuric acid, phosphoric acid, p-toluenesulfonic acid, and methane sulphonic acid. It will be appreciated that this list is 35 not exhaustive and that any acid that can catalyse the reaction may be used in the method of the present invention.
WO 2005/090351 PCT/AU2005/000396 - 25 The mixture may or may not be an aqueous system. When the mixture is an aqueous system, the acid is preferably included in the mixture in an amount such that the 5 concentration of the acid in the mixture is greater than SM. A solvent may also be added to the mixture. The solvent may for example be selected from trifluoroacetic acid, 10 methanesulfonic acid, 1,1,1-trifluorethanol~or an ionic liquid. Typically, step (b) comprises exposing the mixture to conditions effective for at least some of the groups A to 15 react to form cucurbituril groups, wherein at least some of the cucurbituril groups formed are formed from a group A of one molecule of the formula (1) and a group A of another molecule of the formula (1). 20 Step (b) of the method of the present invention typically .comprises heating the mixture to a temperature of from,20 0 C to 120cC for a period of time sufficient to form a compound comprising a plurality of cucurbituril groups. Typically the temperature is 60 0 C to 110 0 C, most preferably from 80'C 25 to 110 0 C. It is preferred that boiling of the mixture is avoided. Heating under reflux is not required but may be used. In some embodiments, step (b) comprises contacting the one 30 or more compounds of the formula (1) with a compound that can form bridges between groups A, or between a group A and an Additional Compound, and heating the mixture to a temperature of from 20 0 C to 120 0 C for a period of time sufficient to form a compound comprising a plurality of 35 cucurbituril groups.
WO 2005/090351 PCT/AU2005/000396 - 26 The method of the present invention is described below by reference to the following non-limiting examples. 1. Preparation of Compounds of Formula (1) and (2) 5 Compounds of formula (1) and (2) may be prepared by a variety of methods. (a) Synthesis of Glycoluril Analogues of Formula (5) 10 Formula (2) encompasses glycoluril analogues of the formula (5) as defined above. Formula (5) encompasses glycoluril of the formula: 0 HN NH HN NH 0 15 Formula (5) also encompasses substituted glycolurils of the formula: 0 HN NH RI1 R2 HN NH 0 WO 2005/090351 PCT/AU2005/000396 - 27 There are a large number of substituted glycolurils known in the literature. Particular reference is made to the review article by Harro Petersen in Synthesis, 1973, 249 5 293, which contains a list of about 30 substituted glycolurils. The literature since that article has disclosed several other examples of substituted glycolurils and it is believed that essentially any a- or #-diketone could be used to make a substituted or 10 unsubstituted glycoluril. Further substituted glycolurils are disclosed in WO 00/68232. 15 Substituted glycolurils and other glycoluril analogues can be prepared by methods known in the art. For example, substituted glycolurils and other glycoluril analogues can be prepared as described in the review article by Harro Petersen in Synthesis, 1973, 249-293. 20 Glycoluril analogues can for example be prepared as described in the following reaction schemes:
R
3 R3 2 O H2N NH2 A H 2 N NH 2 A \ / HN NH HN NH R' 2 R 2 *R1-)/ R2 R1 R 2 HO OH HN NH
R
3 Scheme 1 25 WO 2005/090351 PCT/AU2005/000396 - 28 0 o \\ // R- R 2
R
3 R3 R1 RNH 2
R
3 R3 HN NH HN NH OHCN NCHO R1 R2 R1 R2 HO OH H 2 ' NH 2
R
1 RR2 diamine Scheme 2 wherein each R', R 2 and R 3 group is independently selected and is as defined above for formula (2), and X is a 5 leaving group such as a halo or a thioether. The reactions of Scheme 1 may be carried out under the following conditions: a) Reaction in water at room temperature for several 10 days; b) Reaction in acidic water with or without a cosolvent; c) Reaction in a hydrocarbon solvent in the presence of an acid catalyst while water of reaction is 15 removed azeotropically; d), Reaction in a hydrocarbon solvent in the presence of a Lewis acid with or without removal of water generated during reaction. 20 In Scheme 2, the reaction to form the diamine intermediate is carried out in acid water with or without a cosolvent. The reaction of the diamine intermediate to form the glycoluril analogue is carried out under basic conditions. An example of the reaction of Scheme 2 to form a 25 glycoluril analogue where one R 3 is =NH and the other R3 is =0 is described in I.J. Dagley and M. Kony, Heterocycles 1994, 38, 595.
WO 2005/090351 PCT/AU2005/000396 - 29 Scheme 1 can, for example, be used to prepare the following substituted glycolurils (compounds 1.1 to 1.13): 5 0 0 0 HN NH HN ANH -N HN NH HC N H A Phthalimide-+N Phthalimide HNNNH HN_ NH HNAHIH N NH O HyNH 0 1.1 1.2 O 1.3 O 1.4 0 HN~NO Ac H H CI H 3 C'--,-.~C H NHN NH A ~~~HN NHCIHC t,-CI HNYNH0 O 1.5 1.6 1.7 A 0 HN NH HN NH O A H-) ( CO CN HN NH N HN NH HNH PhCH3--N HNNH
CH
2 Ph 0 0 2 1.8 1.9 1.10 0 0 0 0 HN NH IHN NH HNkNH HN A NH HiN H (H H0+N H- (H3 1.11 HN H 1.12 BrCH -- CH 2Br HN NH 1.13 0 In compound 1.2 above, X is halo. 10 Compounds of formula (2) in which R" and R1 2 together form the group -CHR 5 -0-CHR-5- and R1 3 and R1 4 together form the group -CHR 5 -0-CHR 5 -, can be prepared by mixing a compound of formula (2) in which R" to R 14 are H, with trioxane, a 15 compound of the formula (R 5
)
2 CO or a compound of the formula R 5 0C(R 5
)
2 0R 5 , where R3 is as defined above and each
R
5 is independently selected, and an acid, and heating the WO 2005/090351 PCT/AU2005/000396 - 30 mixture to about 20 0 C to 60 0 C. Typically, when a strong mineral acid or strong organic acid is used the mixture heated to between 20 0 C to 400C. However, if a weaker acid such as trifluroacetic acid is used, the mixture can be 5 heated to about 60 0 C. Compounds of the formula (2) in which some or all of RE 1 to R are -CHR50R 5 can be prepared by reacting a compound of formula (2) in which R" to R- 4 are H with a compound of the 10 formula XHR 5
COR
5 , where X is halo and each R 5 is independently selected and is as defined above, under basic conditions. The reaction typically occurs at room temperature, but the reaction mixture can be heated to about 40 0 C. 15 Example 1 To 3a-(4-(l-chlorobutane)-6a-methylglycoluril (compound 1.7) (1g, 4.2 mmol) suspended in 7M hydrochloric acid (1.27 mL) was added 40% formaldehyde (15 mL) and the 20 mixture stirred at room temperature for 18h. The resultant precipitated diether was collected by filtration washed with water and dried. Example 2 25 To 3a-(p-iodophenyl)-Ga-methylglycoluril (compound 1.2 where X=I) (lg, 1.8 mmol) dissolved in concentrated sulfuric acid (7 mL) was added 40% formaldehyde (1.7 mL) at room temperature. After 20-30 min the mixture was poured into ice water and the precipitated diether was 30 collected by filtration and dried at 80 0 C in vacuo, yield 80%. Example 3 To 3a,6a-diphenylglycoluril (1g, 1.8 mmol) dissolved in 35 concentrated sulfuric acid (7 mL) was added 40% formaldehyde (0.7 mL) at room temperature. After 20-30 min the mixture was poured into ice water and the WO 2005/090351 PCT/AU2005/000396 - 31 precipitated diether was collected by filtration and dried at 80 0 C in vacuo, yield 95%. Example 4 5 To 3a,6a-di(p-iodophenyl)glycoluril (1g, 1.8 mmol) dissolved in concentrated sulfuric acid (6 mL) was added 40% formaldehyde (0.54 mL) at room temperature. After 20 30 min the mixture was poured into ice water and the precipitated diether was collected by filtration and dried 10 at 800C in vacuo. Example 5 3a,6a-cyclopentanoglycoluril (1g, 5.49 mmol) was added to a mixture of dimethylsufoxide (1 mL), water (2 mL) and 40% 15 formaldehyde (1.6 mL) at room temperature and the pH of the mixture adjusted to 9 with 1 M NaOH. After 12h the mixture was poured into methanol (15 mL) and the precipitated tetrol (compound 2.6) was collected by filtration and dried at 800C in vacuo 82% yield. 20 Example 6 To 3'a-(4-but-2-ene)-6a-methylglycoluril (compound 1.3) (1g, 0.48mmol) dissolved in trifluoroacetic acid (2mL) was added 40%- formaldehyde (1.46mL) and the mixture heated to 25 600C for 12h. Evaporation of the solvent afforded the diether, yield 70%. At short reaction times of less than ihr a mixture of alcohols and ethers is formed. Diether analogues of glycoluril can also be prepared under 30 anhydrous conditions, similar to the method of A. Wu, A. Chakraborty, D. Witt, J. Lagona, F. Damkai, M. A. Ofori, J. K. Chiles, J. C. Fettinger, and L. Isaacs J. Org.Chem. 2002, 67, 5817-5830, incorporated herein by reference.
WO 2005/090351 PCT/AU2005/000396 - 32 (b) Synthesis of oligomers Compounds of the formula (2) include oligomers comprising 5 2 to 10 units of formula (B) linked by bridges of the formula -CHR 5 -. Such oligomers, and oligomers of the formula (2) as defined above but in which y is 10, can be used as precursors to prepare compounds of formula (1) as described below at "(c) Synthesis of Compounds of Formula 10 (1)". Glycoluril analogues can be used to prepare such oligomers. The oligomers can be prepared by mixing one or more glycoluril analogues with an acid, and if required a 15 compound that can form bridges of the formula -CHR5 between glycoluril analogues, and heating the mixture. The compound that can form bridges of the formula -CHR 5 may be trioxane, a compound of the formula R 5
COR
5 or a compound of the formula R 5
OC(R
5
)
2 0R 5 , wherein R 5 is as 20 defined above and each R 5 is independently selected. Compounds of formula (2) comprising 2 or more units of the formula (B) linked by bridges of the formula -CHR 5 - can also be reacted with a glycoluril analogue or another 25 compound of formula (2) comprising 2 or more units of the formula (B) linked by bridges of the formula -CHR 5 -, under similar conditions to those described above to produce an oligomer containing a greater number of units of the formula (B). 30 The inventor has found that using suitable reaction temperatures and reaction times, oligomers comprising 2 to 11 units of the formula (B) linked by bridges of the formula -CHR 5 - can be prepared without the oligomers 35 reacting to form cucurbiturils. Typically the oligomers are prepared by heating the reaction mixture to a temperature below 50 0 C for a period of less than about 20 WO 2005/090351 PCT/AU2005/000396 - 33 hours. This process typically results in the production of a mixture of oligomers comprising different numbers of units of the formula (E). If desired, an oligomer having a particular length may be separated from the other 5 oligomers in the mixture by crystallisation or chromatography. Examples of compounds of formula (2) include compounds 2.1 to 2.7 having the structure set out below: 10 WO 2005/090351 PCT/AU2005/000396 - 34 o 0 o P h/\V / %h \---N NN N J O O o 0 /-N N N N-~\ o A-(- H H4-(< 0 2.1 diether dimer \-N N- N 0 0 o O HN--N' NH ~ 2.3 diether dimer HN-N- -H 0 0 HN N--wN NH HN N H N N -N NH )f f 4_H H3 C%, H,) - 00H 4 +H H NH HN N -_,N N N NH 2.2 dimer 0 0 0 o 2.4 Trimer N N 0 HC) (- CH 3 0 N N N N N N 0 O H 3 C-) (-CH 3 He) (-H 3 C- (-CH 3 ,0 2.5 diether N N N N ---- N N, O 0 0 0 HO N N OH HO---N N---OH 2.7 tetramer n=2 0 2.6 tetrol Example 7 5 To 3a-isopropylglycoluril (1g, 5.4 mmol) dissolved in trifluoroacetic acid (15 mL) was added 40% formaldehyde (1.62 mL) and the mixture heated at 50*C or reflux for 24h. The solvent was evaporated to give predominantly the dimer (compound 2.3) which was purified or used crude.
WO 2005/090351 PCT/AU2005/000396 - 35 Example 8 To alkyltethered bisglycoluril (compound 1.11) (500 g, 1.9 mmol) dissolved in trifluoroacetic acid (15 mL) was added 5 40% formaldehyde (0.855 mL) and the mixture heated at 50 0 C or reflux for 24h. The solvent was evaporated to give predominantly the dimer which was purified or used crude. Example 9 10 To 3a-(4-(l-chloro-4-methylbutane)glycoluril (compound 1.6) (1g, 4.2 mmol) dissolved in trifluoroacetic acid (15 mL) was added 40% formaldehyde (1.26 mL) and the mixture heated at 50 0 C or reflux for 24h. The solvent was evaporated to give the dimer formaldehyde derivative as an 15 ether. Example 10 The formaldehyde diether derivative of 3a-(4-(l-chloro-4 methylbutane)glycoluril (compound 1.6) (19, 2.9mmol) and 20 the unsubstituted glycoluril dimer (compound 2.2) (1.89, 5.8mmol) were mixed together in concentrated HC1 (5mL) at room temperature. After 30 mins and up to 1 hr the homogeneous mixture was poured into MeOH (10mL) and the precipitate collected and dried to give predominantly the 25 pentamer. Example 11 The formaldehyde diether derivative of 3a,6a diphenylglycoluril (2.9g, 7.7mmol), the unsubstituted 30 glycoluril dimer (compound 2.2) (4.7g, 15.4mmol) and K 2
CO
3 (530mg) were mixed together in methanesulfonic acid (40mL) at room temperature, 20 min then 10min at 50 0 C. The homogeneous mixture was poured into MeOH (60mL) and the precipitate collected and dried to give predominantly the 35 pentamer.
WO 2005/090351 PCT/AU2005/000396 - 36 Example 12 The formaldehyde diether derivative (compound 2.5) of dimethylglycoluril (1g, 5.9 mmol) and unsubstituted 5 glycoluril dimer (compound 2.2) (0.91g, 2.95mmol)in conc. HCl (2mL) were stirred together at room temperature for 30 min to lhr and the homogeneous mixture was poured into MeOH (10mL) and the precipitate collected and dried to give predominantly the diether tetramer. 10 Example 13 The tetrol derivative (compound 2.6) of 3a,6a cyclopentanoglycoluril (1g, 3.3mmol)was added to a solution of unsubstituted glycoluril (937mg,6.6mmol)in 15 conc. HCl (2mL) and the mixture stirred at room temperature for 30 min. The homogeneous mixture was poured into MeOH (10mL) and the precipitate collected and dried to give predominantly the trimer. 20 Although Examples 7 to 13 concern the preparation of oligomers in which R3 is =0 and R 5 is H in all the units of formula (B) in the oligomer, analogous processes can be used to prepare oligomers where some or all of the R 3 groups are other than =0 and/or some or all of the R 5 25 groups are other than H. For example, oligomers where R3 is other than =0 can be prepared using glycoluril analogues where R 3 is other than =0 as a starting material. Oligomers where R 5 is other than H can be prepared using analogous processes to those exemplified in Examples 7 to 30 9 in which a compound of the formula RSCORE where one or both RS groups is other than H is used instead of formaldehyde. (c) Synthesis of Compounds of Formula (1) 35 Compounds of formula (2), and oligomers of formula (2) as defined above but in which y is 10, can be used as WO 2005/090351 PCT/AU2005/000396 - 37 precursors to prepare compounds of formula (1) . This is possible through a variety of reactions such as nucleophilic or electrophilic substitution as single or paired electrons, coupling reactions and condensation 5 reactions. Such reactions can, for example be used to prepare compounds such as compounds 3.1 to 3.6 referred to below. Similarly, conventional co-ordination chemistry techniques can also be used to prepare compounds of the formula (1) in which L is a metal or comprises a metal and 10 the compound of formula (1) is a metal complex. Such techniques can for example be used to prepare compounds such as the bis-phenanthroline glycoluril cobalt co ordination complex 3.7 referred to below. 15 Alternatively linked glycolurils of formula (1) can be prepared directly from a polyketone (eg RICOCOR 2
COCOR
3 to give compound 1.11 when R 2 is -CHCH 3
CH
2
CH
2
CH
2
CH
3 CH-, and R 1 and R 3 are CH3, or compound 1.12 when R 2 is -CH 2
CH
2
CH
2
CH
2
CH
2 , and R 1 and R 3 are CH 3 ,) using the reaction conditions 20 described above for Scheme 1. The structures of various compounds of formula (1) (compounds 3.1 to 3.7) are set out below: WO 2005/090351 PCT/AU2005/000396 -38 OH OH OH 0 OH 0 0 N C N o~N Ho-- . 0 - 0 3 3.1 3.2 0 0 000 !- 0 HNN - HN' 11 "N
H
3 CF1 NH / poye \/ H o 0 3.43 0 0 H1+1'N NH HI\AN H3,t polymer OH 3 l-fN NH& HN N 0.3.5 0 o1 CH30 3. 0 .
WO 2005/090351 PCT/AU2005/000396 - 39 (CH NH 2 2 Co NH 22 Q YIN H 3.7 5 Example 14 A mixture of undecane-2,3,9,10-tetrone or a tetramethoxy acetal (1.4gm) in acidified water pH 1 (0.5mL) (optionally with a-cosolvent THF(3mL))and urea (1.13gm) was stirred at room temperature for several days. The solid linked 10 glycoluril (compound 1.12) was collected by filtration and washed with methanol and dried (1gm). Preparation of compound 3.2. Aqueous 40% formaldehyde (0.7mL) was added to the linked glycoluril (compound 1.12) 15 (0.53gm ) suspended in 8M HCl (1.2mL)at ambient temperature. The stirred mixture was maintained at this temperature for 20hr. Methanol (5mL) was added to the homogeneous solution and the precipitate collected by filtration and dried in vacuo. The product (compound 3.2, 20 where n = 1) was used in the method of the present invention without further purification.
WO 2005/090351 PCT/AU2005/000396 - 40 2. Formation of Compounds Comprising a Plurality of Cucurbituril Groups 5 In the following Examples 15 and 16, the "compound 3.2" was the compound 3.2 where n = 1 prepared as described in Example 14. Example 15 10 Compound 3.2 (350mg) was added to a fine suspension of the unsubstituted glycoluril dimer (compound 2.2) (332mg) in HCl 32% (SmL). The mixture was stirred at room temperature for 2h and a gel was formed. Heating the mixture to 95 0 C for 3hr gave a homogeneous solution. All volatile material 15 was removed in vacuo to give a solid product. The solid product contained compounds comprising a plurality of cucurbituril groups. An alternative procedure, which gave less crosslinking of 20 the polymeric product, was carried out as described below. Compound 3.2 (350mg) was added to a fine suspension of the unsubstituted glycoluril dimer (compound 2.2) (663mg) in HCl 32% (5mL). The mixture was stirred at room temperature 25 for 2h to give a homogeneous mixture without forming a gel. Then (350mg) of compound 3.2, was added and the mixture heated to 95 0 C for 3hr, after an initial period of 20 min at room temperature. All volatile material was removed in vacuo to give a solid product. This product was 30 insoluble in water and salt solutions. The solid product contained compounds comprising a plurality of cucurbituril groups. Example 16 35 Compound 3.2 (350mg) was added to unsubstituted glycoluril (77mg)in HCl 32% (3mL). The mixture was stirred at room temperature for 2h and a gel was formed. Heating the WO 2005/090351 PCT/AU2005/000396 - 41 mixture to 95 0 C for 3hr gave a homogeneous solution. All volatile material was removed in vacuo to give a solid product. The solid product contained compounds comprising a plurality of cucurbituril groups. 5 Example 17 A compound of formula (1) having a structure similar to compound 3.5 was prepared by heating polyethylenimine (50% water solution 3mL; the polyethylenimine having an average 10 molecular weight of 2000 Daltons) with hisbromomethylglycoluril (compound 1.13, 100mg)for 12hr. The resultant mixture was cooled in an ice bath, acidified with hydrochloric acid and the acid concentration increased to saturation by passing HCl gas into the 15 mixture. At room temperature paraformaldehyde (37mg) was added and the mixture maintained at room temperature for 12hr. Then compound 2.2 (188mg) and paraformaldehyde (18mg) was added and the mixture heated to 90 0 C for 3hr. Evaporation of the solvent gave a solid product containing 20 a plurality of predominately cucurbit[5]uril groups. The predominance of cucurbit[5]uril groups was demonstrated through gas adsorption experiments. Example 18 25 A compound of formula (1) having a structure similar to compound 3.5 was prepared by heating polyethylenimine (50% water solution 3mL; the polyethylemine having an average molecular weight of 2000 Daltons) with bisbromomethylglycoluril (compound 1.13, 100mg) for 12hr. 30 The resultant mixture was cooled in an ice bath, acidified with hydrochloric acid and the acid concentration increased to saturation by passing HCI gas into the mixture. At room temperature paraformaldehyde (37mg) was added and the mixture maintained at room temperature for 35 12hr. Then compound 2.7 (240mg) was added and the mixture WO 2005/090351 PCT/AU2005/000396 - 42 heated to 90'C for 3hr. Evaporation of the solvent gave a solid product containing a plurality of predominately cucurbitE[Sluril groups. The predominance of cucurbit[5]uril groups was demonstrated through gas 5 adsorption uptake in particular acetylene/propane ratios. Further examples of the method of the invention are provided by the following representative reaction schemes (1) to (6): 10 0 0 HQ H O N H HO~ H 2 N N ~ H H N-- 4H HO( -N N NCH-OH H 0 O OH HO O r0 0 4.2 (2) CH2 N-NH N-\ HN NH HN NH O O (3) H X CH 2 X HNY NH H 0 0 4.3 54.3 15 WO 2005/090351 PCT/AU2005/000396 - 43 0 A o HN ANH OH /- N N H+-+H N HN NH N NxO jHN (4) N N O N -N O 0 0 X CH 0 N 0 4.4 H qH HN NH N-/ QC N NT)P ( 5 ) C H X O 0 'i H+ 0 4.5 H NH H 7 NH CH 0 (6) X CHAX0 0 4.6 5 In representative reaction schemes (1) to (6) , n and y are integers and X is a heteroatom such as N, S or 0. 10 WO 2005/090351 PCT/AU2005/000396 - 44 The representative reaction schemes (1) to (6) above are merely illustrative, and the products depicted are merely illustrative of the manner in which the cucurbituril groups may be linked in some of the compounds produced by 5 the method of the invention. The method of the present invention can be used to prepare compounds containing a plurality of cucurbituril groups. In some embodiments of the invention, the compound 10 produced is a compound comprising a large number of linked cucurbituril groups. Whether the cucurbituril groups in the compounds prepared by the method of the present invention are linked in a linear, branched or cross-linked manner, and the extent of cross linking, depends on the 15 groups A and the Additional Compounds (if any) used and the size of the cucurbituril groups formed. The distribution of sizes of the cucurbituril groups formed can be altered by the presence or absence of a templating compound. Compounds comprising a plurality of 20 cucurbituril groups linked in a manner similar to that illustrated at 4.4 and 4.5 in illustrative reaction schemes (4) and (5) above predominantly occur when the cucurbituril groups formed are cucurbit[6]uril groups. 25 An advantage of the method of present invention is that the method involves the preparation of compounds containing a plurality of cucurbituril groups without requiring the initial production of cucurbiturils or cucurbituril analogues comprising a single cucurbituril 30 group followed by the subsequent step of linking the cucurbiturils or cucurbituril analogues. This can result in cost and time savings.
WO 2005/090351 PCT/AU2005/000396 - 45 The compounds comprising a plurality of cucurbituril groups prepared by the method of the present invention can be used for the same purposes as cucurbiturils as described in WO 00/68232. The compound comprising a 5 plurality of cucurbituril groups prepared by the method of the present invention may, for example, be used to provide slow release of compounds complexed with the cucurbituril groups in the compound, for example, in formulations for the slow release of therapeutically active agents. 10 In some embodiments, the method of the present invention can be used to prepare compounds comprising a large number of linked cucurbituril groups. Such compounds are large molecules and are therefore typically less liable to being 15 physically washed away by a liquid or gas passing past the compound than a smaller cucurbituril or cucurbituril analogue molecule comprising a single cucurbituril group. Further, in those applications where the compound comprising a plurality of cucurbituril groups is dissolved 20 in a liquid, the high molecular weight of the compound means the compound can, if desired, be conveniently retained in a given environment in the liquid by use of an artificial or biological film or membrane. 25 In some embodiments, the compound comprising two or more cucurbituril groups produced by the method of the present invention may be shaped or otherwise formed into an article while maintaining the complexing property of the cucurbituril groups. For example, some compounds 30 comprising a plurality of cucurbituril groups may be formed into films or beads. Such films can be used to partition solutions and gases and the cucurbituril groups on the film are able to selectively capture certain WO 2005/090351 PCT/AU2005/000396 - 46 molecules or substances from the solution or gas, thus allowing selective substances to cross the film from one solution or gas to another 5 It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the specific embodiments described herein without departing from the spirit or scope of the invention as broadly described. The specific 10 embodiments described or exemplified herein are, therefore, to be considered in all respects as illustrative and not restrictive.

Claims (11)

1. A method for preparing a compound comprising a plurality of cucurbituril groups, the method comprising 5 the steps of: (a) forming a mixture comprising one or more compounds of the formula (1) 10 A-L-A (1) wherein: L is a linking group; and 15 each A is independently selected and is a group of the formula (A) R 3 R 6 R3 R 7 R9 N N N N RI R2 R1 R2 Rs' N N N N RI 6RY (A) 20 wherein: for each unit of the formula (B) 25 WO 2005/090351 PCT/AU2005/000396 - 48 R 3 N N R' R2 N N R 3 (B) in formula (A), 5 RI and R 2 may be the same or different, and are each independently selected from a bond with L or a univalent radical, or R1, R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, 10 or R 1 of one unit of the formula (B) and R 2 of an adjacent unit of the formula (B) together form a bond or a divalent radical, and 15 each R 3 is independently selected from the group consisting of =0, =S, =NR', =CXZ, =CZR', =CXR" and =CZ 2 , wherein Z is an electron withdrawing group, X is halo, and R' is selected from the group consisting of a bond with L, H, an optionally substituted straight 20 chain, branched or cyclic, saturated or unsaturated hydrocarbon radical, or an optionally substituted heterocyclyl radical, and R"is a bond with L; each R 6 is independently selected from the group consisting 25 of a bond with L, H, alkyl and aryl; R 7 and R 8 may be the same or different and are WO 2005/090351 PCT/AU2005/000396 - 49 independently selected from the group consisting of H and -CHR 6 R6, or R 7 and RO together form the group -CHR 6 -0-CHR 6 , where each R' is independently selected from the group consisting of a bondswith L, H, alkyl and aryl; 5 R 9 and R1 0 may be the same or different and are independently selected from the group consisting of H and -CHR 6 OR6, or R 9 and R"' together form the group -CHR6-0-CHR6 , where each R6 is independently selected from the group 10 consisting of a bond with L, H, alkyl and aryl; and x is 0 or an integer from 1 to 10; provided that at -least one R 1 , R 2 or R 6 is a bond with L or at least one R 3 is =NR", =CZR" or =CXR" where R" is a bond 15 with L; and an acid; and (b) exposing the mixture to conditions effective for at least some of the groups A to react to form cucurbituril 20 groups, thereby forming a compound comprising a plurality of cucurbituril groups.
2. A method according to claim 1, wherein the mixture further comprises one or more compounds selected from 25 compounds of the formula (6) O 0 R111I- R13 N N R12'N '4N -R 14 0 0 (6) and compounds of the formula (2): WO 2005/090351 PCT/AU2005/000396 50 R
3 R5 R3 R1 N N N N R13 Rl R2 Rl R2 R12' N N N N R14 R 5 (2) wherein: for each unit of the formula (B): R 3 N N R1 R2 N N 5 (B) in the compound of formula (2), R1 and R 2 may-be the same or different, and 10 are each a univalent radical, or R', R 2 and the carbon atoms to which they are bound together form an optionally substituted cyclic group, or R of one unit of the formula (B) and R 2 of an adjacent unit of the formula (B) together form a bond or a divalent 15 radical, and each R 3 is independently selected from the group consisting WO 2005/090351 PCT/AU2005/000396 - 51 of =0, =S, =NR, =CXZ, =CRZ or =CZ 2 , wherein Z is an electron withdrawing group, X is halo, and R is H, an optionally substituted straight chain, branched or cyclic, saturated or unsaturated hydrocarbon radical, or an 5 optionally substituted heterocyclyl radical; each R9 in formula (2) is independently selected from the group consisting of H, alkyl and aryl; 10 R" and R 12 may be the same or different and are independently selected from the group consisting of H and -CHROR', or RE and R 12 together form the group -CHR-O CHR-, where each R 5 is independently selected and is as defined above, 15 R 1 3 and R 14 may be the same or different and are independently selected from the group consisting of H and -CHR'OR', or R1 3 and R1 4 together form the group -CHR 5 -0 CHR-, where each R 5 is independently selected and is as 20 defined as above; and y is 0 or an integer from 1 to 9; and wherein at least some of the cucurbituril groups 25 formed are formed from a group A of one molecule of the formula (1), a group A of at least one other molecule of the formula (1) and one or more molecules of formula (2) or (6). 30 3. A method according to claim 1 or 2, wherein step (b) comprises heating the mixture to a temperature from 20 0 C to 120 0 C.
4. A method according to claim 1 or 2, wherein step (b) 35 further comprises contacting the one or more compounds of the formula (1) with a compound that can form bridges between groups A, and between a group A and a compound of WO 2005/090351 PCT/AU2005/000396 - 52 formula (2) or (6), and heating the mixture to a temperature from 20 0 C to 1200
5. A method according to claim 4, wherein the compound 5 that can form bridges between groups A, and between a group A and compound of formula (2) or (6), is selected from the group consisting of compounds of the formula R 5 COR 5 wherein each R 5 is independently selected from the group consisting of H, alkyl and aryl, compounds of the 10 formula R 5 0C(R 5 ) 2 0R 5 wherein each R- is independently selected from the group consisting of H, alkyl and aryl, trioxane, optionally substituted 3,4-dihydropyran and optionally substituted 2,3-dihydrofuran. 15
6. A method according to claim 4, wherein the compound that can form bridges between groups A, and between a group A and compound of formula (2) or (6), is formaldehyde. 20
7. A method according to any one of claims 1 to 6, wherein R 3 is 0 and R6 is H.
8. A method according to any one of claims 1 to 7 wherein L is a polymer. 25
9. A method according to any one of claims 1 to 7 wherein L is a group of the formula -(CR 2 )a (E- (CR 2 )b-)e(CR 2 )d- or -(CR 2 ) a- (E -(CR=CR)b-) a (CR 2 )d wherein: 30 E is -0-, -NR-, -S-, a saturated or unsaturated divalent hydrocarbon radical, or an optionally substituted aliphatic or aromatic divalent heterocyclyl radical; R is H, an optionally substituted straight chain, branched or cyclic, saturated or unsaturated hydrocarbon radical or 35 an optionally substituted heterocyclyl radical; and a, b, c and d are each 0 or an integer from 1 to 30; provided that not all of a, b, c and d are 0. WO 2005/090351 PCT/AU2005/000396 - 53
10. A method according to any one of claims 1 to 7 wherein L is -(CH 2 )n-, -(CH=CH) -, -0-, -NH-, -CH 2 -NH-, -CH (CH 3 ) (CH 2 ) nCH (CH 3 ) - or 5 - (CH 2 ) n-N (CH 3 ) CH 2 CH 2 N (CH 3 ) - (CH2) p where n and p are an integer.
11. A compound comprising a plurality of cucurbituril groups produced by the method of any one of claims 1 to 10 10.
AU2005222730A 2004-03-19 2005-03-18 Method for preparing compounds comprising cucurbituril groups Abandoned AU2005222730A1 (en)

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