AU2002219965A1 - Method for ultra-high resolution mapping of genes and determination of genetic networks among genes underlying phenotypic traits - Google Patents
Method for ultra-high resolution mapping of genes and determination of genetic networks among genes underlying phenotypic traitsInfo
- Publication number
- AU2002219965A1 AU2002219965A1 AU2002219965A AU1996502A AU2002219965A1 AU 2002219965 A1 AU2002219965 A1 AU 2002219965A1 AU 2002219965 A AU2002219965 A AU 2002219965A AU 1996502 A AU1996502 A AU 1996502A AU 2002219965 A1 AU2002219965 A1 AU 2002219965A1
- Authority
- AU
- Australia
- Prior art keywords
- recombinant
- lines
- phenotype
- recombinant inbred
- genetic
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 230000002068 genetic effect Effects 0.000 title claims description 161
- 238000000034 method Methods 0.000 title claims description 141
- 238000013507 mapping Methods 0.000 title claims description 84
- 108090000623 proteins and genes Proteins 0.000 title claims description 83
- 230000003993 interaction Effects 0.000 claims description 48
- 238000004458 analytical method Methods 0.000 claims description 45
- 230000007613 environmental effect Effects 0.000 claims description 28
- 241001465754 Metazoa Species 0.000 claims description 17
- 150000001720 carbohydrates Chemical class 0.000 claims description 16
- 150000002632 lipids Chemical class 0.000 claims description 16
- 230000002922 epistatic effect Effects 0.000 claims description 13
- 102000004169 proteins and genes Human genes 0.000 claims description 12
- 238000012986 modification Methods 0.000 claims description 11
- 230000004048 modification Effects 0.000 claims description 11
- 239000003814 drug Substances 0.000 claims description 9
- 229940079593 drug Drugs 0.000 claims description 9
- 238000010367 cloning Methods 0.000 claims description 8
- 241000124008 Mammalia Species 0.000 claims description 7
- 241000283984 Rodentia Species 0.000 claims description 7
- 230000003542 behavioural effect Effects 0.000 claims description 7
- 230000001413 cellular effect Effects 0.000 claims description 6
- 230000014509 gene expression Effects 0.000 claims description 6
- NHBKXEKEPDILRR-UHFFFAOYSA-N 2,3-bis(butanoylsulfanyl)propyl butanoate Chemical compound CCCC(=O)OCC(SC(=O)CCC)CSC(=O)CCC NHBKXEKEPDILRR-UHFFFAOYSA-N 0.000 claims description 5
- 238000011765 DBA/2 mouse Methods 0.000 claims description 5
- 208000020584 Polyploidy Diseases 0.000 claims description 5
- 230000009145 protein modification Effects 0.000 claims description 5
- 206010071602 Genetic polymorphism Diseases 0.000 claims description 4
- 208000035199 Tetraploidy Diseases 0.000 claims description 4
- 238000009399 inbreeding Methods 0.000 claims description 3
- 238000004519 manufacturing process Methods 0.000 claims description 3
- 238000011740 C57BL/6 mouse Methods 0.000 claims 1
- 230000000694 effects Effects 0.000 description 47
- 210000000349 chromosome Anatomy 0.000 description 31
- 241000699666 Mus <mouse, genus> Species 0.000 description 25
- 230000037396 body weight Effects 0.000 description 18
- 210000004027 cell Anatomy 0.000 description 18
- 108700028369 Alleles Proteins 0.000 description 17
- 238000001514 detection method Methods 0.000 description 16
- 230000000996 additive effect Effects 0.000 description 15
- 210000004556 brain Anatomy 0.000 description 14
- 230000002759 chromosomal effect Effects 0.000 description 14
- 238000013459 approach Methods 0.000 description 13
- 238000005215 recombination Methods 0.000 description 11
- 230000006798 recombination Effects 0.000 description 11
- 230000004720 fertilization Effects 0.000 description 10
- 108091034117 Oligonucleotide Proteins 0.000 description 9
- 238000012360 testing method Methods 0.000 description 9
- 101001024425 Mus musculus Ig gamma-2A chain C region secreted form Proteins 0.000 description 7
- 230000000971 hippocampal effect Effects 0.000 description 6
- 230000013011 mating Effects 0.000 description 6
- 238000006467 substitution reaction Methods 0.000 description 6
- 238000002474 experimental method Methods 0.000 description 5
- 230000009021 linear effect Effects 0.000 description 5
- 230000008774 maternal effect Effects 0.000 description 5
- 102000054765 polymorphisms of proteins Human genes 0.000 description 5
- 238000011731 BALB/cByJ (JAX™ mouse strain) Methods 0.000 description 4
- 230000001276 controlling effect Effects 0.000 description 4
- 230000002596 correlated effect Effects 0.000 description 4
- 239000002773 nucleotide Substances 0.000 description 4
- 125000003729 nucleotide group Chemical group 0.000 description 4
- 230000008775 paternal effect Effects 0.000 description 4
- 238000007894 restriction fragment length polymorphism technique Methods 0.000 description 4
- 108091092878 Microsatellite Proteins 0.000 description 3
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 3
- 238000003556 assay Methods 0.000 description 3
- 238000006243 chemical reaction Methods 0.000 description 3
- 239000012634 fragment Substances 0.000 description 3
- 238000009396 hybridization Methods 0.000 description 3
- 238000002493 microarray Methods 0.000 description 3
- 238000005204 segregation Methods 0.000 description 3
- 230000035945 sensitivity Effects 0.000 description 3
- 238000004088 simulation Methods 0.000 description 3
- 239000007787 solid Substances 0.000 description 3
- 241000196324 Embryophyta Species 0.000 description 2
- 239000000654 additive Substances 0.000 description 2
- 230000015572 biosynthetic process Effects 0.000 description 2
- 238000005516 engineering process Methods 0.000 description 2
- 102000054767 gene variant Human genes 0.000 description 2
- 210000004602 germ cell Anatomy 0.000 description 2
- 230000002998 immunogenetic effect Effects 0.000 description 2
- 238000000338 in vitro Methods 0.000 description 2
- 238000002347 injection Methods 0.000 description 2
- 239000007924 injection Substances 0.000 description 2
- 239000000463 material Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 230000003234 polygenic effect Effects 0.000 description 2
- 239000000523 sample Substances 0.000 description 2
- 239000000126 substance Substances 0.000 description 2
- 238000011282 treatment Methods 0.000 description 2
- 238000010200 validation analysis Methods 0.000 description 2
- 238000006037 Brook Silaketone rearrangement reaction Methods 0.000 description 1
- 238000011817 C57BL/6A mouse Methods 0.000 description 1
- 108091027305 Heteroduplex Proteins 0.000 description 1
- 208000026350 Inborn Genetic disease Diseases 0.000 description 1
- 241000699670 Mus sp. Species 0.000 description 1
- 230000009471 action Effects 0.000 description 1
- 230000004075 alteration Effects 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 230000010165 autogamy Effects 0.000 description 1
- 239000012867 bioactive agent Substances 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 230000003915 cell function Effects 0.000 description 1
- 239000002131 composite material Substances 0.000 description 1
- 150000001875 compounds Chemical class 0.000 description 1
- 238000007796 conventional method Methods 0.000 description 1
- 230000000875 corresponding effect Effects 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 238000003795 desorption Methods 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 230000018109 developmental process Effects 0.000 description 1
- 235000005911 diet Nutrition 0.000 description 1
- 230000037213 diet Effects 0.000 description 1
- 230000003292 diminished effect Effects 0.000 description 1
- 210000002257 embryonic structure Anatomy 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
- 238000002875 fluorescence polarization Methods 0.000 description 1
- 230000006870 function Effects 0.000 description 1
- 230000004927 fusion Effects 0.000 description 1
- 208000016361 genetic disease Diseases 0.000 description 1
- 102000054766 genetic haplotypes Human genes 0.000 description 1
- 230000007614 genetic variation Effects 0.000 description 1
- 230000001295 genetical effect Effects 0.000 description 1
- 238000012268 genome sequencing Methods 0.000 description 1
- 238000003205 genotyping method Methods 0.000 description 1
- 239000011521 glass Substances 0.000 description 1
- 238000004128 high performance liquid chromatography Methods 0.000 description 1
- 239000011159 matrix material Substances 0.000 description 1
- 230000003340 mental effect Effects 0.000 description 1
- 238000010369 molecular cloning Methods 0.000 description 1
- 230000004879 molecular function Effects 0.000 description 1
- 230000003562 morphometric effect Effects 0.000 description 1
- 238000013425 morphometry Methods 0.000 description 1
- 230000007935 neutral effect Effects 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 108020004707 nucleic acids Proteins 0.000 description 1
- 102000039446 nucleic acids Human genes 0.000 description 1
- 150000007523 nucleic acids Chemical class 0.000 description 1
- 238000002966 oligonucleotide array Methods 0.000 description 1
- 238000010397 one-hybrid screening Methods 0.000 description 1
- 238000010647 peptide synthesis reaction Methods 0.000 description 1
- 238000003752 polymerase chain reaction Methods 0.000 description 1
- 108090000765 processed proteins & peptides Proteins 0.000 description 1
- 230000000750 progressive effect Effects 0.000 description 1
- 230000005855 radiation Effects 0.000 description 1
- 230000001172 regenerating effect Effects 0.000 description 1
- 230000010076 replication Effects 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 150000003431 steroids Chemical class 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 238000001269 time-of-flight mass spectrometry Methods 0.000 description 1
Classifications
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01K—ANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
- A01K67/00—Rearing or breeding animals, not otherwise provided for; New or modified breeds of animals
- A01K67/027—New or modified breeds of vertebrates
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01K—ANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
- A01K2227/00—Animals characterised by species
- A01K2227/10—Mammal
- A01K2227/105—Murine
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Environmental Sciences (AREA)
- Animal Behavior & Ethology (AREA)
- Zoology (AREA)
- Animal Husbandry (AREA)
- Biodiversity & Conservation Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US25070600P | 2000-12-01 | 2000-12-01 | |
US60/250,706 | 2000-12-01 | ||
PCT/US2001/044929 WO2002044422A2 (en) | 2000-12-01 | 2001-11-30 | Method for ultra-high resolution mapping of genes and determination of genetic networks among genes underlying phenotypic traits |
Publications (1)
Publication Number | Publication Date |
---|---|
AU2002219965A1 true AU2002219965A1 (en) | 2002-06-11 |
Family
ID=22948825
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
AU2002219965A Abandoned AU2002219965A1 (en) | 2000-12-01 | 2001-11-30 | Method for ultra-high resolution mapping of genes and determination of genetic networks among genes underlying phenotypic traits |
Country Status (9)
Country | Link |
---|---|
US (1) | US20020123058A1 (is) |
EP (1) | EP1364056A2 (is) |
JP (1) | JP2004520820A (is) |
AU (1) | AU2002219965A1 (is) |
CA (1) | CA2430054A1 (is) |
IL (1) | IL156062A0 (is) |
IS (1) | IS6832A (is) |
MX (1) | MXPA03004777A (is) |
WO (1) | WO2002044422A2 (is) |
Families Citing this family (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6909971B2 (en) * | 2001-06-08 | 2005-06-21 | Licentia Oy | Method for gene mapping from chromosome and phenotype data |
EP1501927A2 (en) | 2002-05-02 | 2005-02-02 | University Of North Carolina At Chapel Hill | In vitro mutagenesis, phenotyping, and gene mapping |
WO2004061125A2 (en) | 2002-12-31 | 2004-07-22 | Mmi Genomics, Inc. | Compositions, methods and systems for inferring bovine traits |
BRPI0415468A (pt) * | 2003-10-24 | 2007-03-27 | Mmi Genomics Inc | métodos e sistemas para inferir caracterìsticas para controlar criação não de gado |
US20080228700A1 (en) | 2007-03-16 | 2008-09-18 | Expanse Networks, Inc. | Attribute Combination Discovery |
WO2008137031A2 (en) * | 2007-05-04 | 2008-11-13 | The Jackson Laboratory | Panels of genetically diverse samples and methods of use thereof |
US20090043752A1 (en) * | 2007-08-08 | 2009-02-12 | Expanse Networks, Inc. | Predicting Side Effect Attributes |
US8108406B2 (en) | 2008-12-30 | 2012-01-31 | Expanse Networks, Inc. | Pangenetic web user behavior prediction system |
US8386519B2 (en) | 2008-12-30 | 2013-02-26 | Expanse Networks, Inc. | Pangenetic web item recommendation system |
EP3276526A1 (en) | 2008-12-31 | 2018-01-31 | 23Andme, Inc. | Finding relatives in a database |
US11545235B2 (en) | 2012-12-05 | 2023-01-03 | Ancestry.Com Dna, Llc | System and method for the computational prediction of expression of single-gene phenotypes |
CN107568155B (zh) * | 2017-10-10 | 2020-07-03 | 葛洪伟 | 中华竹鼠第一父系的培育方法 |
CN116246701B (zh) * | 2023-02-13 | 2024-03-22 | 广州金域医学检验中心有限公司 | 基于表型术语和变异基因的数据分析装置、介质和设备 |
Family Cites Families (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1990004651A1 (en) * | 1988-10-19 | 1990-05-03 | Whitehead Institute For Biomedical Research | Mapping quantitative traits using genetic markers |
US6573438B1 (en) * | 1997-03-14 | 2003-06-03 | Syngenta Participations Ag | Inbred Maize line 2044BT |
-
2001
- 2001-11-30 US US09/998,058 patent/US20020123058A1/en not_active Abandoned
- 2001-11-30 IL IL15606201A patent/IL156062A0/xx unknown
- 2001-11-30 AU AU2002219965A patent/AU2002219965A1/en not_active Abandoned
- 2001-11-30 MX MXPA03004777A patent/MXPA03004777A/es unknown
- 2001-11-30 JP JP2002546770A patent/JP2004520820A/ja active Pending
- 2001-11-30 CA CA002430054A patent/CA2430054A1/en not_active Abandoned
- 2001-11-30 EP EP01998659A patent/EP1364056A2/en not_active Withdrawn
- 2001-11-30 WO PCT/US2001/044929 patent/WO2002044422A2/en not_active Application Discontinuation
-
2003
- 2003-05-28 IS IS6832A patent/IS6832A/is unknown
Also Published As
Publication number | Publication date |
---|---|
MXPA03004777A (es) | 2004-04-21 |
IS6832A (is) | 2003-05-28 |
WO2002044422A8 (en) | 2002-07-18 |
JP2004520820A (ja) | 2004-07-15 |
WO2002044422A3 (en) | 2003-09-25 |
US20020123058A1 (en) | 2002-09-05 |
CA2430054A1 (en) | 2002-06-06 |
WO2002044422A2 (en) | 2002-06-06 |
IL156062A0 (en) | 2003-12-23 |
EP1364056A2 (en) | 2003-11-26 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
White et al. | Genetic dissection of a key reproductive barrier between nascent species of house mice | |
Jain et al. | rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline | |
Nishimura et al. | Genome-wide association study identified three major QTL for carcass weight including the PLAG1-CHCHD7 QTN for stature in Japanese Black cattle | |
Tanksley | Mapping polygenes | |
Flint et al. | Finding the molecular basis of quatitative traits: successes and pitfalls | |
US20020123058A1 (en) | Method for ultra-high resolution mapping of genes and determination of genetic networks among genes underlying phenotypic traits | |
Dementieva et al. | Assessing the effects of rare alleles and linkage disequilibrium on estimates of genetic diversity in the chicken populations | |
Kwitek-Black et al. | The use of designer rats in the genetic dissection of hypertension | |
EP2978860B1 (en) | Assessment of risk of aneuploidy | |
Soller et al. | Restriction fragment length polymorphisms in poultry breeding | |
Finseth et al. | Supergene potential of a selfish centromere | |
JP7429072B2 (ja) | 核酸ライブラリーの構築方法、およびその移植前胚染色体構造異常分析における使用 | |
Mabire et al. | High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array | |
Szymura et al. | Inheritance and linkage analysis of five enzyme loci in interspecific hybrids of toadlets, genus Bombina | |
Shook et al. | PATRIOT: A pipeline for tracing identity-by-Descent for chromosome segments to improve genomic prediction in self-pollinating crop species | |
Timmermans et al. | Region-specific cis-and trans-acting factors contribute to genetic variability in meiotic recombination in maize | |
US20020129389A1 (en) | Method for determining the in vivo function of DNA coding sequences | |
Id-Lahoucine et al. | Unravelling transmission ratio distortion across the bovine genome: identification of candidate regions for reproduction defects | |
NZ509171A (en) | Method for indentifying segragating index phenotype modifying single point mutations | |
JP2004529649A (ja) | 方法 | |
Dentine et al. | Marker-assisted selection | |
Nitzki et al. | Identification of a genetic contamination in a commercial mouse strain using two panels of polymorphic markers | |
Waugh et al. | Exploiting barley genetic resources for genome wide association scans (GWAS) | |
Schulz et al. | Nondisjunction and transmission ratio distortion ofChromosome 2 in a (2.8) Robertsonian translocation mouse strain | |
Brodkin et al. | Quantitative trait locus analysis: a new tool for psychiatric genetics |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
MK4 | Application lapsed section 142(2)(d) - no continuation fee paid for the application |