AU2002214939A1 - Method for rapid typification of microorganisms and set of reagents used - Google Patents
Method for rapid typification of microorganisms and set of reagents usedInfo
- Publication number
- AU2002214939A1 AU2002214939A1 AU2002214939A AU1493902A AU2002214939A1 AU 2002214939 A1 AU2002214939 A1 AU 2002214939A1 AU 2002214939 A AU2002214939 A AU 2002214939A AU 1493902 A AU1493902 A AU 1493902A AU 2002214939 A1 AU2002214939 A1 AU 2002214939A1
- Authority
- AU
- Australia
- Prior art keywords
- electrophoresis
- aid
- intact dna
- molecules
- agent
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44773—Multi-stage electrophoresis, e.g. two-dimensional electrophoresis
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Molecular Biology (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Zoology (AREA)
- Immunology (AREA)
- Wood Science & Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Electrochemistry (AREA)
- Biophysics (AREA)
- Pathology (AREA)
- General Physics & Mathematics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Medicines Containing Material From Animals Or Micro-Organisms (AREA)
Abstract
A process for rapid typing of yeast, parasites and bacteria is provided. It comprises the following steps: a) Preparing immobilized intact DNA in 5 to 60 minutes aided by a method involving a reagent kit that only contains buffer solution, a detergent, a metal chelating agent and an agent to disrupt the hydrogen bonds. b) Separating intact DNA molecules or their restriction fragments in miniequipments for Pulsed Field Gel Electrophoresis of the CHEF (Contour Clamped Homogeneous Electric Field) and TAFE (Transversal Alternating Field Electrophoresis) systems in times comprised between 2.5 and 7 hours. c) Selecting the optimal conditions that should be set in miniCHEF with the aid of a method to simulate the electrophoresis patterns d) Providing reorientation times, migration velocities and sizes of the molecules calculated with the aid of a method to analyze the migrated distances without the use of size markers. <IMAGE>
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CU2000/0247 | 2000-11-07 | ||
CU20000247A CU23095A1 (en) | 2000-11-07 | 2000-11-07 | PROCESS FOR QUICK TYPIFICATION OF MICROORGANISMS AND REAGENT GAME EMPLOYED |
PCT/CU2001/000008 WO2002038802A1 (en) | 2000-11-07 | 2001-11-02 | Method for rapid typification of microorganisms and set of reagents used |
Publications (1)
Publication Number | Publication Date |
---|---|
AU2002214939A1 true AU2002214939A1 (en) | 2002-05-21 |
Family
ID=40134841
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
AU2002214939A Abandoned AU2002214939A1 (en) | 2000-11-07 | 2001-11-02 | Method for rapid typification of microorganisms and set of reagents used |
Country Status (19)
Country | Link |
---|---|
US (1) | US7731828B2 (en) |
EP (1) | EP1350852B1 (en) |
JP (1) | JP3955817B2 (en) |
CN (1) | CN100532569C (en) |
AT (1) | ATE350490T1 (en) |
AU (1) | AU2002214939A1 (en) |
BR (1) | BR0115172B1 (en) |
CA (1) | CA2428313C (en) |
CU (1) | CU23095A1 (en) |
CY (1) | CY1106369T1 (en) |
DE (1) | DE60125832T2 (en) |
DK (1) | DK1350852T3 (en) |
EC (1) | ECSP034577A (en) |
ES (1) | ES2276843T3 (en) |
HK (1) | HK1063822A1 (en) |
MX (1) | MXPA03004006A (en) |
PT (1) | PT1350852E (en) |
WO (1) | WO2002038802A1 (en) |
ZA (1) | ZA200303472B (en) |
Families Citing this family (18)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US7482116B2 (en) | 2002-06-07 | 2009-01-27 | Dna Genotek Inc. | Compositions and methods for obtaining nucleic acids from sputum |
CA2418582A1 (en) * | 2003-02-07 | 2004-08-07 | Dupont Canada Inc. | A method for simulating and modeling the presence and growth of microbes, including pathogens and spoilage organisms through a food supply chain |
US20080079726A1 (en) * | 2006-07-03 | 2008-04-03 | Wolfgang Geiger | Visual display of process sequences |
US20080044822A1 (en) * | 2006-08-21 | 2008-02-21 | Gafur Zainiev | Nucleic acid array with releaseable nucleic acid probes |
US20090286694A1 (en) * | 2006-08-21 | 2009-11-19 | Gafur Zainiev | Nucleic acid array with releaseable nucleic acid probes |
US20100056388A1 (en) * | 2006-08-21 | 2010-03-04 | Cnvgenes, Inc. | Nucleic acid array having fixed nucleic acid anti-probes and complementary free nucleic acid probes |
US20080044821A1 (en) * | 2006-08-21 | 2008-02-21 | Gafur Zainiev | Nucleic acid array having fixed nucleic acid anti-probes and complementary free nucleic acid probes |
WO2012170560A2 (en) * | 2011-06-06 | 2012-12-13 | Cornell University | Microfluidic device for extracting, isolating, and analyzing dna from cells |
EP2721140B1 (en) | 2011-06-19 | 2016-11-23 | Abogen, Inc. | Devices, solutions and methods for sample collection |
CN103196980B (en) * | 2013-03-27 | 2014-10-08 | 中国水产科学研究院淡水渔业研究中心 | Rapid pulse field gel electrophoresis typing method for streptococcus fish |
US9999856B2 (en) | 2013-07-26 | 2018-06-19 | General Electric Company | Methods for electroelution of biomolecules |
US9333463B2 (en) | 2013-07-26 | 2016-05-10 | General Electric Company | Devices and systems for elution of biomolecules |
PL3114225T3 (en) * | 2014-03-07 | 2021-11-08 | Dna Genotek Inc. | Composition and method for stabilizing nucleic acids in biological samples |
CN105372318B (en) * | 2014-08-28 | 2018-01-05 | 山东省肿瘤医院 | The cell fixation methods that cell in-situ electrophoresis is combined with flow cytometer showed art |
CN104561326B (en) * | 2015-01-16 | 2017-02-22 | 天津医科大学 | Typing method based on pilus diversity for uropathogenic escherichia coli |
US11383240B2 (en) | 2016-05-22 | 2022-07-12 | Cornell University | Single cell whole genome amplification via micropillar arrays under flow conditions |
WO2018051374A1 (en) | 2016-09-15 | 2018-03-22 | Dianax S.R.L. | Microfluidic device, particularly of the lab-on-chip type, for the concentration, purification, and detection of biological and/or medical targets of interest from a biological sample |
KR102388753B1 (en) * | 2020-07-20 | 2022-04-20 | 광주과학기술원 | An apparatus for microorganism detection using dielectrophoresis force |
Family Cites Families (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4707237A (en) * | 1982-09-09 | 1987-11-17 | Ciba Corning Diagnostics Corp. | System for identification of cells by electrophoresis |
US4861448A (en) * | 1982-11-18 | 1989-08-29 | The Trustees Of Columbia University In The City Of New York | Electrophoretic methods employing gel inserts |
US4473452A (en) * | 1982-11-18 | 1984-09-25 | The Trustees Of Columbia University In The City Of New York | Electrophoresis using alternating transverse electric fields |
CA2052037A1 (en) | 1990-10-02 | 1992-04-03 | Eric Lai | Automatic control system for improved electrophoresis |
FR2693209B1 (en) * | 1992-07-03 | 1994-09-30 | Inst Nat Sante Rech Med | Method for determining the nucleotide size of DNA fragments. |
AU693836B2 (en) | 1993-11-29 | 1998-07-09 | Gen-Probe Incorporated | Method for extracting nucleic acids from a wide range of organisms |
EP0936464B1 (en) * | 1998-02-16 | 2005-04-27 | Mallinckrodt Inc. | Electrophoresis gel container apparatus and method of use thereof |
-
2000
- 2000-11-07 CU CU20000247A patent/CU23095A1/en unknown
-
2001
- 2001-11-02 JP JP2002542115A patent/JP3955817B2/en not_active Expired - Fee Related
- 2001-11-02 CN CNB018203035A patent/CN100532569C/en not_active Expired - Fee Related
- 2001-11-02 AT AT01983428T patent/ATE350490T1/en active
- 2001-11-02 EP EP01983428A patent/EP1350852B1/en not_active Expired - Lifetime
- 2001-11-02 CA CA2428313A patent/CA2428313C/en not_active Expired - Lifetime
- 2001-11-02 WO PCT/CU2001/000008 patent/WO2002038802A1/en active IP Right Grant
- 2001-11-02 ES ES01983428T patent/ES2276843T3/en not_active Expired - Lifetime
- 2001-11-02 MX MXPA03004006A patent/MXPA03004006A/en active IP Right Grant
- 2001-11-02 PT PT01983428T patent/PT1350852E/en unknown
- 2001-11-02 US US10/415,950 patent/US7731828B2/en not_active Expired - Fee Related
- 2001-11-02 BR BRPI0115172-0A patent/BR0115172B1/en not_active IP Right Cessation
- 2001-11-02 DE DE60125832T patent/DE60125832T2/en not_active Expired - Lifetime
- 2001-11-02 DK DK01983428T patent/DK1350852T3/en active
- 2001-11-02 AU AU2002214939A patent/AU2002214939A1/en not_active Abandoned
-
2003
- 2003-05-06 ZA ZA200303472A patent/ZA200303472B/en unknown
- 2003-05-07 EC EC2003004577A patent/ECSP034577A/en unknown
-
2004
- 2004-09-01 HK HK04106583.6A patent/HK1063822A1/en not_active IP Right Cessation
-
2007
- 2007-03-12 CY CY20071100340T patent/CY1106369T1/en unknown
Also Published As
Publication number | Publication date |
---|---|
CY1106369T1 (en) | 2011-10-12 |
CU23095A1 (en) | 2005-11-18 |
CN100532569C (en) | 2009-08-26 |
EP1350852A1 (en) | 2003-10-08 |
ES2276843T3 (en) | 2007-07-01 |
DE60125832D1 (en) | 2007-02-15 |
BR0115172B1 (en) | 2014-10-21 |
US20040050700A1 (en) | 2004-03-18 |
ECSP034577A (en) | 2003-08-29 |
CN1479790A (en) | 2004-03-03 |
JP3955817B2 (en) | 2007-08-08 |
WO2002038802A1 (en) | 2002-05-16 |
BR0115172A (en) | 2004-02-17 |
JP2004513375A (en) | 2004-04-30 |
ATE350490T1 (en) | 2007-01-15 |
MXPA03004006A (en) | 2004-04-02 |
ZA200303472B (en) | 2003-11-11 |
US7731828B2 (en) | 2010-06-08 |
PT1350852E (en) | 2007-03-30 |
CA2428313A1 (en) | 2002-05-16 |
CA2428313C (en) | 2010-09-14 |
DE60125832T2 (en) | 2007-10-11 |
EP1350852B1 (en) | 2007-01-03 |
DK1350852T3 (en) | 2007-05-07 |
HK1063822A1 (en) | 2005-01-14 |
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