AU2001284351A1 - Method for haplotyping by mass spectrometry - Google Patents

Method for haplotyping by mass spectrometry

Info

Publication number
AU2001284351A1
AU2001284351A1 AU2001284351A AU8435101A AU2001284351A1 AU 2001284351 A1 AU2001284351 A1 AU 2001284351A1 AU 2001284351 A AU2001284351 A AU 2001284351A AU 8435101 A AU8435101 A AU 8435101A AU 2001284351 A1 AU2001284351 A1 AU 2001284351A1
Authority
AU
Australia
Prior art keywords
mass spectrometry
haplotyping
snps
single nucleotide
relates
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001284351A
Inventor
Ivo Glynne Gut
Doris Lechner
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Consortum National De Recherche En Genomique (CNRG)
Original Assignee
CT NAT DE GENOTYPAGE
Centre National de Genotypage
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by CT NAT DE GENOTYPAGE, Centre National de Genotypage filed Critical CT NAT DE GENOTYPAGE
Publication of AU2001284351A1 publication Critical patent/AU2001284351A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Electron Tubes For Measurement (AREA)

Abstract

The invention relates to a method for performing haplotyping of multiple single nucleotide polymorphisms (SNPs) that uses allele specific PCR and mass spectrometry analysis;
AU2001284351A 2000-07-24 2001-07-23 Method for haplotyping by mass spectrometry Abandoned AU2001284351A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
EP00402112A EP1176212A1 (en) 2000-07-24 2000-07-24 Method for haplotyping by mass spectrometry
EP00402112 2000-07-24
PCT/IB2001/001646 WO2002008462A1 (en) 2000-07-24 2001-07-23 Method for haplotyping by mass spectrometry

Publications (1)

Publication Number Publication Date
AU2001284351A1 true AU2001284351A1 (en) 2002-02-05

Family

ID=8173780

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001284351A Abandoned AU2001284351A1 (en) 2000-07-24 2001-07-23 Method for haplotyping by mass spectrometry

Country Status (8)

Country Link
US (1) US20040053260A1 (en)
EP (2) EP1176212A1 (en)
AT (1) ATE338829T1 (en)
AU (1) AU2001284351A1 (en)
CA (1) CA2417201A1 (en)
DE (1) DE60122899T2 (en)
ES (1) ES2271066T3 (en)
WO (1) WO2002008462A1 (en)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001090419A2 (en) * 2000-05-23 2001-11-29 Variagenics, Inc. Methods for genetic analysis of dna to detect sequence variances
US7435541B2 (en) 2000-05-23 2008-10-14 Sequenom, Inc. Restriction enzyme genotyping
JP2005525787A (en) * 2001-10-24 2005-09-02 シンギュレックス・インコーポレイテッド Detection method of gene haplotype by interaction with probe
ATE435925T1 (en) * 2003-01-17 2009-07-15 Univ Boston HAPLOTYP ANALYSIS
EP1536021A1 (en) * 2003-11-27 2005-06-01 Consortium National de Recherche en Genomique (CNRG) Method for HLA typing
CA2835942C (en) 2011-05-19 2019-01-22 Sequenom, Inc. Products and processes for multiplex nucleic acid identification
US9487828B2 (en) 2012-05-10 2016-11-08 The General Hospital Corporation Methods for determining a nucleotide sequence contiguous to a known target nucleotide sequence
AU2015209079B2 (en) 2014-01-27 2021-07-15 Archerdx, Llc Methods of preparing nucleic acids for sequencing
WO2016172571A1 (en) 2015-04-24 2016-10-27 Agena Bioscience, Inc. Multiplexed method for the identification and quantitation of minor alleles and polymorphisms
CN114350766A (en) 2015-04-24 2022-04-15 基纳生物技术有限公司 Parallel method for detecting and quantifying minor variants
CN111334583B (en) * 2020-01-19 2023-03-31 中国检验检疫科学研究院 Method for identifying aedes species based on PCR-MS mass spectrometry scanning

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE69213112T2 (en) * 1991-06-20 1997-04-03 Hoffmann La Roche Improved methods for nucleic acid amplification
US5556772A (en) * 1993-12-08 1996-09-17 Stratagene Polymerase compositions and uses thereof
WO1997047766A1 (en) * 1996-06-10 1997-12-18 University Of Utah Research Foundation Rapid, accurate identification of dna sequence variants by electrospray mass spectrometry
US5856104A (en) * 1996-10-28 1999-01-05 Affymetrix, Inc. Polymorphisms in the glucose-6 phosphate dehydrogenase locus
US6476208B1 (en) * 1998-10-13 2002-11-05 Genset Schizophrenia associated genes, proteins and biallelic markers
US6475736B1 (en) * 2000-05-23 2002-11-05 Variagenics, Inc. Methods for genetic analysis of DNA using biased amplification of polymorphic sites

Also Published As

Publication number Publication date
DE60122899D1 (en) 2006-10-19
ES2271066T3 (en) 2007-04-16
CA2417201A1 (en) 2002-01-31
US20040053260A1 (en) 2004-03-18
DE60122899T2 (en) 2007-04-05
WO2002008462A1 (en) 2002-01-31
EP1303638A1 (en) 2003-04-23
EP1303638B1 (en) 2006-09-06
EP1176212A1 (en) 2002-01-30
ATE338829T1 (en) 2006-09-15

Similar Documents

Publication Publication Date Title
AU2001276613A1 (en) Sample generation for genotyping by mass spectrometry
EP1234888A3 (en) Mutation analysis by mass spectrometry using photolytically cleavable primers
AU2003303396A1 (en) Comparative genomic hybridization assays using immobilized oligonucleotide features and compositions for practicing the same
WO2004023092A3 (en) Genetic analysis and authentication
GB2346214B (en) Analysis of single nucleotide polymorphisms using mass spectrometry
AU2001284351A1 (en) Method for haplotyping by mass spectrometry
WO2005044836A3 (en) Macromolecular nucleotide compounds and methods for using the same
AU2003285861A1 (en) High throughput multiplex dna sequence amplifications
WO2004003220A3 (en) Methods and composition for analyzing compromised samples using snps
WO2003048377A3 (en) Multiplex real-time quantitative pcr
AU2003244370A1 (en) Substituted 4,4-difluoro-4-bora-3a, 4a-diaza-s-indacene compounds for 8-color dna sequencing
EP1573037A3 (en) Methods and compositions for analyzing compromised samples using single nucleotide polymorphism panels
WO2005024068A3 (en) Allele-specific sequence variation analysis
AU2002307172A1 (en) Haplotyping method for multiple distal nucleotide polymorphisms
AU3927399A (en) Method for typing of hla alleles
AU2003212476A1 (en) Automated allele determination using fluorometric genotyping
AU2002346517A1 (en) Thermus oshimai nucleic acid polymerases
WO2004081191A3 (en) Molecular haplotyping of genomic dna
WO2006122288A3 (en) Estimating allele frequencies by small pool pcr
AU2002341742A1 (en) Methods and compositions for detection of single nucleotide polymorphisms
AU2003251424A8 (en) Electrochemical detection of single nucleotide polymorphisms (snps)
WO2003068981A3 (en) Method for reducing background contamination after marking reactions
AU2003210259A1 (en) Method for detecting single nucleotide polymorphisms
AU2002321858A1 (en) Method of determining blood-relationship by typing str alleles on the x chromosome and dna typing kit using the same
AU2002336406A1 (en) Allele specific pcr for genotyping