AU2001236555A1 - Method and system for the assembly of a whole genome using a shot-gun data set - Google Patents
Method and system for the assembly of a whole genome using a shot-gun data setInfo
- Publication number
- AU2001236555A1 AU2001236555A1 AU2001236555A AU3655501A AU2001236555A1 AU 2001236555 A1 AU2001236555 A1 AU 2001236555A1 AU 2001236555 A AU2001236555 A AU 2001236555A AU 3655501 A AU3655501 A AU 3655501A AU 2001236555 A1 AU2001236555 A1 AU 2001236555A1
- Authority
- AU
- Australia
- Prior art keywords
- shot
- assembly
- data set
- whole genome
- gun data
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Landscapes
- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US18375800P | 2000-02-22 | 2000-02-22 | |
US60/183,758 | 2000-02-22 | ||
US09/526,131 | 2000-03-15 | ||
US09/526,131 US6714874B1 (en) | 2000-03-15 | 2000-03-15 | Method and system for the assembly of a whole genome using a shot-gun data set |
PCT/US2001/002704 WO2001063543A2 (fr) | 2000-02-22 | 2001-01-29 | Procede et systeme d'assemblage d'un genome entier au moyen d'un ensemble de donnees prises au hasard |
Publications (1)
Publication Number | Publication Date |
---|---|
AU2001236555A1 true AU2001236555A1 (en) | 2001-09-03 |
Family
ID=26879491
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
AU2001236555A Abandoned AU2001236555A1 (en) | 2000-02-22 | 2001-01-29 | Method and system for the assembly of a whole genome using a shot-gun data set |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1285390A2 (fr) |
JP (1) | JP2003530631A (fr) |
AU (1) | AU2001236555A1 (fr) |
CA (1) | CA2400890A1 (fr) |
WO (1) | WO2001063543A2 (fr) |
Families Citing this family (12)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JP2003330934A (ja) * | 2002-05-10 | 2003-11-21 | Celestar Lexico-Sciences Inc | 変異体配列解析装置、変異体配列解析方法、プログラム、および、記録媒体 |
US7575865B2 (en) * | 2003-01-29 | 2009-08-18 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
US20110004616A1 (en) * | 2007-10-31 | 2011-01-06 | National Institute Of Agrobiological Sciences | Base sequence determination program, base sequence determination device, and base sequence determination method |
CN101504697B (zh) * | 2008-12-12 | 2010-09-08 | 深圳华大基因研究院 | 一种片段连接支架的构建方法和系统 |
CN101457253B (zh) * | 2008-12-12 | 2011-08-31 | 深圳华大基因研究院 | 一种测序序列纠错方法、系统及设备 |
US20120197533A1 (en) * | 2010-10-11 | 2012-08-02 | Complete Genomics, Inc. | Identifying rearrangements in a sequenced genome |
TWI420007B (zh) * | 2011-03-04 | 2013-12-21 | Hsueh Ting Chu | 基因測序序列的組合系統及方法 |
WO2012171213A1 (fr) * | 2011-06-17 | 2012-12-20 | 深圳华大基因科技有限公司 | Procédé et système pour l'assemblage d'un génome |
BR102012031096B1 (pt) * | 2012-12-05 | 2019-10-22 | Empresa Brasileira De Pesquisa Agropecuaria Embrapa | método e uso para verificação de erros de montagem em genomas |
AU2013382195B2 (en) | 2013-03-13 | 2019-09-19 | Illumina, Inc. | Methods and systems for aligning repetitive DNA elements |
CN104164479B (zh) * | 2014-04-04 | 2017-09-19 | 深圳华大基因科技服务有限公司 | 杂合基因组处理方法 |
CN104298892B (zh) * | 2014-09-18 | 2017-05-10 | 天津诺禾致源生物信息科技有限公司 | 基因融合的检测装置和方法 |
-
2001
- 2001-01-29 CA CA002400890A patent/CA2400890A1/fr not_active Abandoned
- 2001-01-29 JP JP2001562433A patent/JP2003530631A/ja not_active Withdrawn
- 2001-01-29 EP EP01908713A patent/EP1285390A2/fr not_active Withdrawn
- 2001-01-29 WO PCT/US2001/002704 patent/WO2001063543A2/fr not_active Application Discontinuation
- 2001-01-29 AU AU2001236555A patent/AU2001236555A1/en not_active Abandoned
Also Published As
Publication number | Publication date |
---|---|
WO2001063543A8 (fr) | 2002-02-07 |
JP2003530631A (ja) | 2003-10-14 |
WO2001063543A3 (fr) | 2002-12-05 |
CA2400890A1 (fr) | 2001-08-30 |
EP1285390A2 (fr) | 2003-02-26 |
WO2001063543A2 (fr) | 2001-08-30 |
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