ATE368903T1 - COMPUTER SOFTWARE TO SUPPORT THE IDENTIFICATION OF SNPS USING MICROARRAYS - Google Patents

COMPUTER SOFTWARE TO SUPPORT THE IDENTIFICATION OF SNPS USING MICROARRAYS

Info

Publication number
ATE368903T1
ATE368903T1 AT05712057T AT05712057T ATE368903T1 AT E368903 T1 ATE368903 T1 AT E368903T1 AT 05712057 T AT05712057 T AT 05712057T AT 05712057 T AT05712057 T AT 05712057T AT E368903 T1 ATE368903 T1 AT E368903T1
Authority
AT
Austria
Prior art keywords
variations
data
microarrays
identification
hybridization
Prior art date
Application number
AT05712057T
Other languages
German (de)
Inventor
Michael Molla
Todd Richmond
Steve Smith
Thomas Albert
Original Assignee
Nimblegen Systems Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Nimblegen Systems Inc filed Critical Nimblegen Systems Inc
Application granted granted Critical
Publication of ATE368903T1 publication Critical patent/ATE368903T1/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S977/00—Nanotechnology
    • Y10S977/70—Nanostructure
    • Y10S977/788—Of specified organic or carbon-based composition
    • Y10S977/789—Of specified organic or carbon-based composition in array format
    • Y10S977/79—Of specified organic or carbon-based composition in array format with heterogeneous nanostructures
    • Y10S977/791—Molecular array
    • Y10S977/792—Nucleic acid array, e.g. human genome array

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Software Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Molecular Biology (AREA)
  • Signal Processing (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

The present invention is a method to assist in the identification of single nucleotide polymorphisms (SNP) from microarray hybridization data. Data from hybridization protocols run on microarrays often have variations in the data resulting from variations in hybridization conditions and efficiencies and variations in optical intensities. An algorithm is described to screen the results to identify those data points most likely to be real SNPs as opposed to variations in the hybridization or sensing data.
AT05712057T 2004-01-26 2005-01-26 COMPUTER SOFTWARE TO SUPPORT THE IDENTIFICATION OF SNPS USING MICROARRAYS ATE368903T1 (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US53922004P 2004-01-26 2004-01-26

Publications (1)

Publication Number Publication Date
ATE368903T1 true ATE368903T1 (en) 2007-08-15

Family

ID=34826044

Family Applications (1)

Application Number Title Priority Date Filing Date
AT05712057T ATE368903T1 (en) 2004-01-26 2005-01-26 COMPUTER SOFTWARE TO SUPPORT THE IDENTIFICATION OF SNPS USING MICROARRAYS

Country Status (7)

Country Link
US (1) US7904250B2 (en)
EP (1) EP1709565B1 (en)
AT (1) ATE368903T1 (en)
CA (1) CA2554977A1 (en)
DE (1) DE602005001850T2 (en)
ES (1) ES2292110T3 (en)
WO (1) WO2005073894A2 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2012059906A (en) * 2010-09-09 2012-03-22 Sony Corp Storage element and memory unit
US20150259743A1 (en) 2013-12-31 2015-09-17 Roche Nimblegen, Inc. Methods of assessing epigenetic regulation of genome function via dna methylation status and systems and kits therefor
CN107878166A (en) * 2017-12-14 2018-04-06 苏州宝特威机电有限公司 It is a kind of can Automatic-expanding automobile sunshade awning

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5143854A (en) 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
EP2259046A3 (en) 1998-02-23 2011-11-30 Wisconsin Alumni Research Foundation Method for synthesis of arrays of dna probes

Also Published As

Publication number Publication date
WO2005073894A3 (en) 2005-12-08
EP1709565B1 (en) 2007-08-01
US7904250B2 (en) 2011-03-08
DE602005001850T2 (en) 2008-04-17
ES2292110T3 (en) 2008-03-01
WO2005073894A2 (en) 2005-08-11
EP1709565A2 (en) 2006-10-11
CA2554977A1 (en) 2005-08-11
US20060014164A1 (en) 2006-01-19
DE602005001850D1 (en) 2007-09-13

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