WO2023230236A1 - Process for preparing jak inhibitors and intermediates thereof - Google Patents
Process for preparing jak inhibitors and intermediates thereof Download PDFInfo
- Publication number
- WO2023230236A1 WO2023230236A1 PCT/US2023/023539 US2023023539W WO2023230236A1 WO 2023230236 A1 WO2023230236 A1 WO 2023230236A1 US 2023023539 W US2023023539 W US 2023023539W WO 2023230236 A1 WO2023230236 A1 WO 2023230236A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- compound
- formula
- salt
- crystalline form
- values
- Prior art date
Links
- 238000004519 manufacturing process Methods 0.000 title claims description 9
- 239000000543 intermediate Substances 0.000 title abstract description 10
- 229940122245 Janus kinase inhibitor Drugs 0.000 title abstract description 4
- 150000001875 compounds Chemical class 0.000 claims abstract description 296
- 238000000034 method Methods 0.000 claims abstract description 67
- 230000008569 process Effects 0.000 claims abstract description 38
- 150000003839 salts Chemical class 0.000 claims description 132
- 238000006243 chemical reaction Methods 0.000 claims description 59
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 claims description 41
- 239000000203 mixture Substances 0.000 claims description 40
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 claims description 37
- 238000000634 powder X-ray diffraction Methods 0.000 claims description 33
- 239000012458 free base Substances 0.000 claims description 27
- JMMWKPVZQRWMSS-UHFFFAOYSA-N isopropanol acetate Natural products CC(C)OC(C)=O JMMWKPVZQRWMSS-UHFFFAOYSA-N 0.000 claims description 24
- 239000002904 solvent Substances 0.000 claims description 24
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims description 24
- 239000002253 acid Substances 0.000 claims description 21
- OAKJQQAXSVQMHS-UHFFFAOYSA-N Hydrazine Chemical compound NN OAKJQQAXSVQMHS-UHFFFAOYSA-N 0.000 claims description 18
- 238000002411 thermogravimetry Methods 0.000 claims description 16
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 claims description 15
- 239000002585 base Substances 0.000 claims description 15
- 239000012453 solvate Substances 0.000 claims description 15
- 230000005855 radiation Effects 0.000 claims description 14
- 239000003054 catalyst Substances 0.000 claims description 13
- 229910002483 Cu Ka Inorganic materials 0.000 claims description 12
- 125000000217 alkyl group Chemical group 0.000 claims description 12
- 229940011051 isopropyl acetate Drugs 0.000 claims description 12
- GWYFCOCPABKNJV-UHFFFAOYSA-N isovaleric acid Chemical compound CC(C)CC(O)=O GWYFCOCPABKNJV-UHFFFAOYSA-N 0.000 claims description 12
- KDLHZDBZIXYQEI-UHFFFAOYSA-N Palladium Chemical compound [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 claims description 10
- JOXIMZWYDAKGHI-UHFFFAOYSA-N toluene-4-sulfonic acid Chemical compound CC1=CC=C(S(O)(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-N 0.000 claims description 10
- RYHBNJHYFVUHQT-UHFFFAOYSA-N 1,4-Dioxane Chemical compound C1COCCO1 RYHBNJHYFVUHQT-UHFFFAOYSA-N 0.000 claims description 9
- BWHMMNNQKKPAPP-UHFFFAOYSA-L potassium carbonate Chemical compound [K+].[K+].[O-]C([O-])=O BWHMMNNQKKPAPP-UHFFFAOYSA-L 0.000 claims description 8
- 239000003638 chemical reducing agent Substances 0.000 claims description 7
- 239000012321 sodium triacetoxyborohydride Substances 0.000 claims description 7
- FJDQFPXHSGXQBY-UHFFFAOYSA-L caesium carbonate Chemical compound [Cs+].[Cs+].[O-]C([O-])=O FJDQFPXHSGXQBY-UHFFFAOYSA-L 0.000 claims description 5
- DGAQECJNVWCQMB-PUAWFVPOSA-M Ilexoside XXIX Chemical compound C[C@@H]1CC[C@@]2(CC[C@@]3(C(=CC[C@H]4[C@]3(CC[C@@H]5[C@@]4(CC[C@@H](C5(C)C)OS(=O)(=O)[O-])C)C)[C@@H]2[C@]1(C)O)C)C(=O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O.[Na+] DGAQECJNVWCQMB-PUAWFVPOSA-M 0.000 claims description 4
- 229910000027 potassium carbonate Inorganic materials 0.000 claims description 4
- 239000011734 sodium Substances 0.000 claims description 4
- 229910052708 sodium Inorganic materials 0.000 claims description 4
- NWZSZGALRFJKBT-KNIFDHDWSA-N (2s)-2,6-diaminohexanoic acid;(2s)-2-hydroxybutanedioic acid Chemical group OC(=O)[C@@H](O)CC(O)=O.NCCCC[C@H](N)C(O)=O NWZSZGALRFJKBT-KNIFDHDWSA-N 0.000 claims description 3
- 239000012298 atmosphere Substances 0.000 claims description 3
- 229910000024 caesium carbonate Inorganic materials 0.000 claims description 3
- 238000006264 debenzylation reaction Methods 0.000 claims description 3
- IKDUDTNKRLTJSI-UHFFFAOYSA-N hydrazine monohydrate Substances O.NN IKDUDTNKRLTJSI-UHFFFAOYSA-N 0.000 claims description 3
- WROMPOXWARCANT-UHFFFAOYSA-N tfa trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F.OC(=O)C(F)(F)F WROMPOXWARCANT-UHFFFAOYSA-N 0.000 claims description 3
- 125000006273 (C1-C3) alkyl group Chemical group 0.000 claims description 2
- 125000000532 dioxanyl group Chemical group 0.000 claims description 2
- 235000015320 potassium carbonate Nutrition 0.000 claims 1
- 238000002360 preparation method Methods 0.000 abstract description 13
- 108010024121 Janus Kinases Proteins 0.000 abstract description 8
- 102000015617 Janus Kinases Human genes 0.000 abstract description 8
- 239000003112 inhibitor Substances 0.000 abstract description 2
- -1 X-1 Chemical compound 0.000 description 76
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 35
- 239000002002 slurry Substances 0.000 description 22
- 239000000243 solution Substances 0.000 description 22
- 150000001412 amines Chemical class 0.000 description 18
- 125000004432 carbon atom Chemical group C* 0.000 description 18
- 229910052757 nitrogen Inorganic materials 0.000 description 18
- 238000004128 high performance liquid chromatography Methods 0.000 description 16
- 125000003118 aryl group Chemical group 0.000 description 15
- IMNFDUFMRHMDMM-UHFFFAOYSA-N N-Heptane Chemical compound CCCCCCC IMNFDUFMRHMDMM-UHFFFAOYSA-N 0.000 description 14
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 14
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 13
- RMTPDENYPSAQLJ-IBGZPJMESA-N benzyl (6S)-3-benzyl-4,5,6,7-tetrahydroimidazo[4,5-c]pyridine-6-carboxylate Chemical compound O=C(OCC1=CC=CC=C1)[C@@H]1CC2=C(CN1)N(CC1=CC=CC=C1)C=N2 RMTPDENYPSAQLJ-IBGZPJMESA-N 0.000 description 13
- YZCKVEUIGOORGS-OUBTZVSYSA-N Deuterium Chemical compound [2H] YZCKVEUIGOORGS-OUBTZVSYSA-N 0.000 description 10
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 10
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 10
- 229910052799 carbon Inorganic materials 0.000 description 10
- 229910052805 deuterium Inorganic materials 0.000 description 10
- 125000001072 heteroaryl group Chemical group 0.000 description 10
- SVZOSNIYDNSUMW-LBPRGKRZSA-N (6s)-3-benzyl-4,5,6,7-tetrahydro-1h-imidazo[4,5-c]pyridin-3-ium-6-carboxylate Chemical compound C([C@H](NCC=12)C(=O)O)C=1N=CN2CC1=CC=CC=C1 SVZOSNIYDNSUMW-LBPRGKRZSA-N 0.000 description 9
- YXFVVABEGXRONW-UHFFFAOYSA-N Toluene Chemical compound CC1=CC=CC=C1 YXFVVABEGXRONW-UHFFFAOYSA-N 0.000 description 9
- 239000003153 chemical reaction reagent Substances 0.000 description 9
- 239000011521 glass Substances 0.000 description 9
- 238000002156 mixing Methods 0.000 description 9
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 8
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 8
- 125000004429 atom Chemical group 0.000 description 8
- 239000012074 organic phase Substances 0.000 description 8
- 239000000047 product Substances 0.000 description 8
- 239000011541 reaction mixture Substances 0.000 description 8
- 238000010992 reflux Methods 0.000 description 8
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 7
- 150000001408 amides Chemical class 0.000 description 7
- 239000008346 aqueous phase Substances 0.000 description 7
- 239000013078 crystal Substances 0.000 description 7
- SKOWZLGOFVSKLB-UHFFFAOYSA-N hypodiboric acid Chemical compound OB(O)B(O)O SKOWZLGOFVSKLB-UHFFFAOYSA-N 0.000 description 7
- 239000012535 impurity Substances 0.000 description 7
- 239000000843 powder Substances 0.000 description 7
- NDXQRNJVDGDWPC-QFIPXVFZSA-N (6S)-2-[6-(2-ethyl-4-hydroxyphenyl)-1H-indazol-3-yl]-5-propan-2-yl-3,4,6,7-tetrahydroimidazo[4,5-c]pyridine-6-carboxylic acid Chemical compound C(C)C1=C(C=CC(=C1)O)C1=CC=C2C(=NNC2=C1)C1=NC2=C(CN([C@@H](C2)C(=O)O)C(C)C)N1 NDXQRNJVDGDWPC-QFIPXVFZSA-N 0.000 description 6
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 6
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 6
- OFOBLEOULBTSOW-UHFFFAOYSA-N Malonic acid Chemical compound OC(=O)CC(O)=O OFOBLEOULBTSOW-UHFFFAOYSA-N 0.000 description 6
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 6
- MUBZPKHOEPUJKR-UHFFFAOYSA-N Oxalic acid Chemical compound OC(=O)C(O)=O MUBZPKHOEPUJKR-UHFFFAOYSA-N 0.000 description 6
- DTQVDTLACAAQTR-UHFFFAOYSA-N Trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F DTQVDTLACAAQTR-UHFFFAOYSA-N 0.000 description 6
- 230000015572 biosynthetic process Effects 0.000 description 6
- KRKNYBCHXYNGOX-UHFFFAOYSA-N citric acid Chemical compound OC(=O)CC(O)(C(O)=O)CC(O)=O KRKNYBCHXYNGOX-UHFFFAOYSA-N 0.000 description 6
- 125000000753 cycloalkyl group Chemical group 0.000 description 6
- 229910052739 hydrogen Inorganic materials 0.000 description 6
- 239000001257 hydrogen Substances 0.000 description 6
- 239000012071 phase Substances 0.000 description 6
- 125000005017 substituted alkenyl group Chemical group 0.000 description 6
- 125000000547 substituted alkyl group Chemical group 0.000 description 6
- 102000042838 JAK family Human genes 0.000 description 5
- 108091082332 JAK family Proteins 0.000 description 5
- 239000000460 chlorine Substances 0.000 description 5
- 238000005859 coupling reaction Methods 0.000 description 5
- 239000012065 filter cake Substances 0.000 description 5
- 150000004677 hydrates Chemical class 0.000 description 5
- 150000007522 mineralic acids Chemical class 0.000 description 5
- 230000004048 modification Effects 0.000 description 5
- 238000012986 modification Methods 0.000 description 5
- 150000007524 organic acids Chemical class 0.000 description 5
- 239000007858 starting material Substances 0.000 description 5
- GQHTUMJGOHRCHB-UHFFFAOYSA-N 2,3,4,6,7,8,9,10-octahydropyrimido[1,2-a]azepine Chemical compound C1CCCCN2CCCN=C21 GQHTUMJGOHRCHB-UHFFFAOYSA-N 0.000 description 4
- HZAXFHJVJLSVMW-UHFFFAOYSA-N 2-Aminoethan-1-ol Chemical compound NCCO HZAXFHJVJLSVMW-UHFFFAOYSA-N 0.000 description 4
- DWOZNANUEDYIOF-UHFFFAOYSA-L 4-ditert-butylphosphanyl-n,n-dimethylaniline;dichloropalladium Chemical compound Cl[Pd]Cl.CN(C)C1=CC=C(P(C(C)(C)C)C(C)(C)C)C=C1.CN(C)C1=CC=C(P(C(C)(C)C)C(C)(C)C)C=C1 DWOZNANUEDYIOF-UHFFFAOYSA-L 0.000 description 4
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 4
- VZCYOOQTPOCHFL-OWOJBTEDSA-N Fumaric acid Chemical compound OC(=O)\C=C\C(O)=O VZCYOOQTPOCHFL-OWOJBTEDSA-N 0.000 description 4
- AEMRFAOFKBGASW-UHFFFAOYSA-N Glycolic acid Chemical compound OCC(O)=O AEMRFAOFKBGASW-UHFFFAOYSA-N 0.000 description 4
- AFVFQIVMOAPDHO-UHFFFAOYSA-N Methanesulfonic acid Chemical compound CS(O)(=O)=O AFVFQIVMOAPDHO-UHFFFAOYSA-N 0.000 description 4
- YNAVUWVOSKDBBP-UHFFFAOYSA-N Morpholine Chemical compound C1COCCN1 YNAVUWVOSKDBBP-UHFFFAOYSA-N 0.000 description 4
- NBIIXXVUZAFLBC-UHFFFAOYSA-N Phosphoric acid Chemical compound OP(O)(O)=O NBIIXXVUZAFLBC-UHFFFAOYSA-N 0.000 description 4
- GLUUGHFHXGJENI-UHFFFAOYSA-N Piperazine Chemical compound C1CNCCN1 GLUUGHFHXGJENI-UHFFFAOYSA-N 0.000 description 4
- NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 4
- LCTONWCANYUPML-UHFFFAOYSA-N Pyruvic acid Chemical compound CC(=O)C(O)=O LCTONWCANYUPML-UHFFFAOYSA-N 0.000 description 4
- QAOWNCQODCNURD-UHFFFAOYSA-N Sulfuric acid Chemical compound OS(O)(=O)=O QAOWNCQODCNURD-UHFFFAOYSA-N 0.000 description 4
- 125000003342 alkenyl group Chemical group 0.000 description 4
- 239000012296 anti-solvent Substances 0.000 description 4
- WPYMKLBDIGXBTP-UHFFFAOYSA-N benzoic acid Chemical compound OC(=O)C1=CC=CC=C1 WPYMKLBDIGXBTP-UHFFFAOYSA-N 0.000 description 4
- 239000012455 biphasic mixture Substances 0.000 description 4
- PFKFTWBEEFSNDU-UHFFFAOYSA-N carbonyldiimidazole Chemical compound C1=CN=CN1C(=O)N1C=CN=C1 PFKFTWBEEFSNDU-UHFFFAOYSA-N 0.000 description 4
- 238000002425 crystallisation Methods 0.000 description 4
- 230000008025 crystallization Effects 0.000 description 4
- XBDQKXXYIPTUBI-UHFFFAOYSA-N dimethylselenoniopropionate Natural products CCC(O)=O XBDQKXXYIPTUBI-UHFFFAOYSA-N 0.000 description 4
- 238000001035 drying Methods 0.000 description 4
- 150000002431 hydrogen Chemical class 0.000 description 4
- 150000007529 inorganic bases Chemical class 0.000 description 4
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 4
- 150000007530 organic bases Chemical class 0.000 description 4
- 230000002829 reductive effect Effects 0.000 description 4
- YGSDEFSMJLZEOE-UHFFFAOYSA-N salicylic acid Chemical compound OC(=O)C1=CC=CC=C1O YGSDEFSMJLZEOE-UHFFFAOYSA-N 0.000 description 4
- 238000013456 study Methods 0.000 description 4
- 239000000126 substance Substances 0.000 description 4
- 238000003786 synthesis reaction Methods 0.000 description 4
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 4
- VZCYOOQTPOCHFL-UHFFFAOYSA-N trans-butenedioic acid Natural products OC(=O)C=CC(O)=O VZCYOOQTPOCHFL-UHFFFAOYSA-N 0.000 description 4
- GETQZCLCWQTVFV-UHFFFAOYSA-N trimethylamine Chemical compound CN(C)C GETQZCLCWQTVFV-UHFFFAOYSA-N 0.000 description 4
- CYPYTURSJDMMMP-WVCUSYJESA-N (1e,4e)-1,5-diphenylpenta-1,4-dien-3-one;palladium Chemical compound [Pd].[Pd].C=1C=CC=CC=1\C=C\C(=O)\C=C\C1=CC=CC=C1.C=1C=CC=CC=1\C=C\C(=O)\C=C\C1=CC=CC=C1.C=1C=CC=CC=1\C=C\C(=O)\C=C\C1=CC=CC=C1 CYPYTURSJDMMMP-WVCUSYJESA-N 0.000 description 3
- KZPYGQFFRCFCPP-UHFFFAOYSA-N 1,1'-bis(diphenylphosphino)ferrocene Chemical compound [Fe+2].C1=CC=C[C-]1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=C[C-]1P(C=1C=CC=CC=1)C1=CC=CC=C1 KZPYGQFFRCFCPP-UHFFFAOYSA-N 0.000 description 3
- LVEYOSJUKRVCCF-UHFFFAOYSA-N 1,3-bis(diphenylphosphino)propane Chemical compound C=1C=CC=CC=1P(C=1C=CC=CC=1)CCCP(C=1C=CC=CC=1)C1=CC=CC=C1 LVEYOSJUKRVCCF-UHFFFAOYSA-N 0.000 description 3
- VHUUQVKOLVNVRT-UHFFFAOYSA-N Ammonium hydroxide Chemical compound [NH4+].[OH-] VHUUQVKOLVNVRT-UHFFFAOYSA-N 0.000 description 3
- WVDDGKGOMKODPV-UHFFFAOYSA-N Benzyl alcohol Chemical compound OCC1=CC=CC=C1 WVDDGKGOMKODPV-UHFFFAOYSA-N 0.000 description 3
- VQIIUJSNIKEMCK-MHZLTWQESA-N [3-(dimethylamino)azetidin-1-yl]-[(6S)-2-[6-(2-ethyl-4-hydroxyphenyl)-1H-indazol-3-yl]-5-propan-2-yl-3,4,6,7-tetrahydroimidazo[4,5-c]pyridin-6-yl]methanone Chemical compound CN(C1CN(C1)C(=O)[C@@H]1CC2=C(CN1C(C)C)NC(=N2)C1=NNC2=CC(=CC=C12)C1=C(C=C(C=C1)O)CC)C VQIIUJSNIKEMCK-MHZLTWQESA-N 0.000 description 3
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 3
- 230000008901 benefit Effects 0.000 description 3
- 230000002051 biphasic effect Effects 0.000 description 3
- 125000003636 chemical group Chemical group 0.000 description 3
- 230000008878 coupling Effects 0.000 description 3
- 238000010168 coupling process Methods 0.000 description 3
- 125000004122 cyclic group Chemical group 0.000 description 3
- 125000005842 heteroatom Chemical group 0.000 description 3
- 125000004435 hydrogen atom Chemical group [H]* 0.000 description 3
- 230000006872 improvement Effects 0.000 description 3
- 230000001965 increasing effect Effects 0.000 description 3
- 230000001404 mediated effect Effects 0.000 description 3
- 235000005985 organic acids Nutrition 0.000 description 3
- 229910052760 oxygen Inorganic materials 0.000 description 3
- 239000001301 oxygen Substances 0.000 description 3
- 238000000746 purification Methods 0.000 description 3
- 239000000376 reactant Substances 0.000 description 3
- 238000006467 substitution reaction Methods 0.000 description 3
- 238000012546 transfer Methods 0.000 description 3
- 238000005292 vacuum distillation Methods 0.000 description 3
- CXNIUSPIQKWYAI-UHFFFAOYSA-N xantphos Chemical compound C=12OC3=C(P(C=4C=CC=CC=4)C=4C=CC=CC=4)C=CC=C3C(C)(C)C2=CC=CC=1P(C=1C=CC=CC=1)C1=CC=CC=C1 CXNIUSPIQKWYAI-UHFFFAOYSA-N 0.000 description 3
- QBYIENPQHBMVBV-HFEGYEGKSA-N (2R)-2-hydroxy-2-phenylacetic acid Chemical compound O[C@@H](C(O)=O)c1ccccc1.O[C@@H](C(O)=O)c1ccccc1 QBYIENPQHBMVBV-HFEGYEGKSA-N 0.000 description 2
- 125000004169 (C1-C6) alkyl group Chemical group 0.000 description 2
- BJEPYKJPYRNKOW-REOHCLBHSA-N (S)-malic acid Chemical compound OC(=O)[C@@H](O)CC(O)=O BJEPYKJPYRNKOW-REOHCLBHSA-N 0.000 description 2
- WBYWAXJHAXSJNI-VOTSOKGWSA-M .beta-Phenylacrylic acid Natural products [O-]C(=O)\C=C\C1=CC=CC=C1 WBYWAXJHAXSJNI-VOTSOKGWSA-M 0.000 description 2
- BDNKZNFMNDZQMI-UHFFFAOYSA-N 1,3-diisopropylcarbodiimide Chemical compound CC(C)N=C=NC(C)C BDNKZNFMNDZQMI-UHFFFAOYSA-N 0.000 description 2
- KLDLRDSRCMJKGM-UHFFFAOYSA-N 3-[chloro-(2-oxo-1,3-oxazolidin-3-yl)phosphoryl]-1,3-oxazolidin-2-one Chemical compound C1COC(=O)N1P(=O)(Cl)N1CCOC1=O KLDLRDSRCMJKGM-UHFFFAOYSA-N 0.000 description 2
- BMYNFMYTOJXKLE-UHFFFAOYSA-N 3-azaniumyl-2-hydroxypropanoate Chemical compound NCC(O)C(O)=O BMYNFMYTOJXKLE-UHFFFAOYSA-N 0.000 description 2
- MZFPAWGWFDGCHP-UHFFFAOYSA-N 5-diphenylphosphanylpentyl(diphenyl)phosphane Chemical compound C=1C=CC=CC=1P(C=1C=CC=CC=1)CCCCCP(C=1C=CC=CC=1)C1=CC=CC=C1 MZFPAWGWFDGCHP-UHFFFAOYSA-N 0.000 description 2
- QGZKDVFQNNGYKY-UHFFFAOYSA-O Ammonium Chemical compound [NH4+] QGZKDVFQNNGYKY-UHFFFAOYSA-O 0.000 description 2
- 239000005711 Benzoic acid Substances 0.000 description 2
- OYPRJOBELJOOCE-UHFFFAOYSA-N Calcium Chemical compound [Ca] OYPRJOBELJOOCE-UHFFFAOYSA-N 0.000 description 2
- WBYWAXJHAXSJNI-SREVYHEPSA-N Cinnamic acid Chemical compound OC(=O)\C=C/C1=CC=CC=C1 WBYWAXJHAXSJNI-SREVYHEPSA-N 0.000 description 2
- 102000004127 Cytokines Human genes 0.000 description 2
- 108090000695 Cytokines Proteins 0.000 description 2
- FEWJPZIEWOKRBE-JCYAYHJZSA-N Dextrotartaric acid Chemical compound OC(=O)[C@H](O)[C@@H](O)C(O)=O FEWJPZIEWOKRBE-JCYAYHJZSA-N 0.000 description 2
- QOSSAOTZNIDXMA-UHFFFAOYSA-N Dicylcohexylcarbodiimide Chemical compound C1CCCCC1N=C=NC1CCCCC1 QOSSAOTZNIDXMA-UHFFFAOYSA-N 0.000 description 2
- QUSNBJAOOMFDIB-UHFFFAOYSA-N Ethylamine Chemical compound CCN QUSNBJAOOMFDIB-UHFFFAOYSA-N 0.000 description 2
- PIICEJLVQHRZGT-UHFFFAOYSA-N Ethylenediamine Chemical compound NCCN PIICEJLVQHRZGT-UHFFFAOYSA-N 0.000 description 2
- 239000007821 HATU Substances 0.000 description 2
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 description 2
- WHXSMMKQMYFTQS-UHFFFAOYSA-N Lithium Chemical compound [Li] WHXSMMKQMYFTQS-UHFFFAOYSA-N 0.000 description 2
- BAVYZALUXZFZLV-UHFFFAOYSA-N Methylamine Chemical compound NC BAVYZALUXZFZLV-UHFFFAOYSA-N 0.000 description 2
- FXHOOIRPVKKKFG-UHFFFAOYSA-N N,N-Dimethylacetamide Chemical compound CN(C)C(C)=O FXHOOIRPVKKKFG-UHFFFAOYSA-N 0.000 description 2
- SECXISVLQFMRJM-UHFFFAOYSA-N N-Methylpyrrolidone Chemical compound CN1CCCC1=O SECXISVLQFMRJM-UHFFFAOYSA-N 0.000 description 2
- UEEJHVSXFDXPFK-UHFFFAOYSA-N N-dimethylaminoethanol Chemical compound CN(C)CCO UEEJHVSXFDXPFK-UHFFFAOYSA-N 0.000 description 2
- HTLZVHNRZJPSMI-UHFFFAOYSA-N N-ethylpiperidine Chemical compound CCN1CCCCC1 HTLZVHNRZJPSMI-UHFFFAOYSA-N 0.000 description 2
- GRYLNZFGIOXLOG-UHFFFAOYSA-N Nitric acid Chemical compound O[N+]([O-])=O GRYLNZFGIOXLOG-UHFFFAOYSA-N 0.000 description 2
- 102100032028 Non-receptor tyrosine-protein kinase TYK2 Human genes 0.000 description 2
- 241001479588 Packera glabella Species 0.000 description 2
- XYFCBTPGUUZFHI-UHFFFAOYSA-N Phosphine Chemical compound P XYFCBTPGUUZFHI-UHFFFAOYSA-N 0.000 description 2
- ZLMJMSJWJFRBEC-UHFFFAOYSA-N Potassium Chemical compound [K] ZLMJMSJWJFRBEC-UHFFFAOYSA-N 0.000 description 2
- IWYDHOAUDWTVEP-UHFFFAOYSA-N R-2-phenyl-2-hydroxyacetic acid Natural products OC(=O)C(O)C1=CC=CC=C1 IWYDHOAUDWTVEP-UHFFFAOYSA-N 0.000 description 2
- CDBYLPFSWZWCQE-UHFFFAOYSA-L Sodium Carbonate Chemical compound [Na+].[Na+].[O-]C([O-])=O CDBYLPFSWZWCQE-UHFFFAOYSA-L 0.000 description 2
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical compound [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 2
- KDYFGRWQOYBRFD-UHFFFAOYSA-N Succinic acid Natural products OC(=O)CCC(O)=O KDYFGRWQOYBRFD-UHFFFAOYSA-N 0.000 description 2
- NINIDFKCEFEMDL-UHFFFAOYSA-N Sulfur Chemical group [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 description 2
- 108010010057 TYK2 Kinase Proteins 0.000 description 2
- FEWJPZIEWOKRBE-UHFFFAOYSA-N Tartaric acid Natural products [H+].[H+].[O-]C(=O)C(O)C(O)C([O-])=O FEWJPZIEWOKRBE-UHFFFAOYSA-N 0.000 description 2
- 150000003973 alkyl amines Chemical class 0.000 description 2
- BJEPYKJPYRNKOW-UHFFFAOYSA-N alpha-hydroxysuccinic acid Natural products OC(=O)C(O)CC(O)=O BJEPYKJPYRNKOW-UHFFFAOYSA-N 0.000 description 2
- 229910000147 aluminium phosphate Inorganic materials 0.000 description 2
- 239000000908 ammonium hydroxide Substances 0.000 description 2
- 238000003556 assay Methods 0.000 description 2
- 235000010233 benzoic acid Nutrition 0.000 description 2
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 description 2
- YNHIGQDRGKUECZ-UHFFFAOYSA-L bis(triphenylphosphine)palladium(ii) dichloride Chemical compound [Cl-].[Cl-].[Pd+2].C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1 YNHIGQDRGKUECZ-UHFFFAOYSA-L 0.000 description 2
- KDYFGRWQOYBRFD-NUQCWPJISA-N butanedioic acid Chemical compound O[14C](=O)CC[14C](O)=O KDYFGRWQOYBRFD-NUQCWPJISA-N 0.000 description 2
- XJHCXCQVJFPJIK-UHFFFAOYSA-M caesium fluoride Chemical compound [F-].[Cs+] XJHCXCQVJFPJIK-UHFFFAOYSA-M 0.000 description 2
- 239000011575 calcium Substances 0.000 description 2
- 229910052791 calcium Inorganic materials 0.000 description 2
- 150000001721 carbon Chemical group 0.000 description 2
- 235000013985 cinnamic acid Nutrition 0.000 description 2
- 229930016911 cinnamic acid Natural products 0.000 description 2
- 235000015165 citric acid Nutrition 0.000 description 2
- 102000003675 cytokine receptors Human genes 0.000 description 2
- 108010057085 cytokine receptors Proteins 0.000 description 2
- 230000001419 dependent effect Effects 0.000 description 2
- 125000005265 dialkylamine group Chemical group 0.000 description 2
- HPNMFZURTQLUMO-UHFFFAOYSA-N diethylamine Chemical compound CCNCC HPNMFZURTQLUMO-UHFFFAOYSA-N 0.000 description 2
- BGRWYRAHAFMIBJ-UHFFFAOYSA-N diisopropylcarbodiimide Natural products CC(C)NC(=O)NC(C)C BGRWYRAHAFMIBJ-UHFFFAOYSA-N 0.000 description 2
- 230000036267 drug metabolism Effects 0.000 description 2
- 230000000694 effects Effects 0.000 description 2
- CCIVGXIOQKPBKL-UHFFFAOYSA-M ethanesulfonate Chemical compound CCS([O-])(=O)=O CCIVGXIOQKPBKL-UHFFFAOYSA-M 0.000 description 2
- 239000000706 filtrate Substances 0.000 description 2
- 238000001914 filtration Methods 0.000 description 2
- 239000001530 fumaric acid Substances 0.000 description 2
- 235000011087 fumaric acid Nutrition 0.000 description 2
- 229940083124 ganglion-blocking antiadrenergic secondary and tertiary amines Drugs 0.000 description 2
- 230000014509 gene expression Effects 0.000 description 2
- 125000000623 heterocyclic group Chemical group 0.000 description 2
- 150000004678 hydrides Chemical class 0.000 description 2
- 208000027866 inflammatory disease Diseases 0.000 description 2
- 208000002551 irritable bowel syndrome Diseases 0.000 description 2
- JJWLVOIRVHMVIS-UHFFFAOYSA-N isopropylamine Chemical compound CC(C)N JJWLVOIRVHMVIS-UHFFFAOYSA-N 0.000 description 2
- 229910052744 lithium Inorganic materials 0.000 description 2
- 159000000003 magnesium salts Chemical class 0.000 description 2
- VZCYOOQTPOCHFL-UPHRSURJSA-N maleic acid Chemical compound OC(=O)\C=C/C(O)=O VZCYOOQTPOCHFL-UPHRSURJSA-N 0.000 description 2
- 239000011976 maleic acid Substances 0.000 description 2
- 239000001630 malic acid Substances 0.000 description 2
- 235000011090 malic acid Nutrition 0.000 description 2
- 229960002510 mandelic acid Drugs 0.000 description 2
- 238000004949 mass spectrometry Methods 0.000 description 2
- 239000000463 material Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 230000002503 metabolic effect Effects 0.000 description 2
- 230000004060 metabolic process Effects 0.000 description 2
- 229940098779 methanesulfonic acid Drugs 0.000 description 2
- WBYWAXJHAXSJNI-UHFFFAOYSA-N methyl p-hydroxycinnamate Natural products OC(=O)C=CC1=CC=CC=C1 WBYWAXJHAXSJNI-UHFFFAOYSA-N 0.000 description 2
- 229910017604 nitric acid Inorganic materials 0.000 description 2
- 238000010899 nucleation Methods 0.000 description 2
- 235000006408 oxalic acid Nutrition 0.000 description 2
- YJVFFLUZDVXJQI-UHFFFAOYSA-L palladium(ii) acetate Chemical compound [Pd+2].CC([O-])=O.CC([O-])=O YJVFFLUZDVXJQI-UHFFFAOYSA-L 0.000 description 2
- FJKROLUGYXJWQN-UHFFFAOYSA-N papa-hydroxy-benzoic acid Natural products OC(=O)C1=CC=C(O)C=C1 FJKROLUGYXJWQN-UHFFFAOYSA-N 0.000 description 2
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 description 2
- 238000002600 positron emission tomography Methods 0.000 description 2
- 239000011591 potassium Substances 0.000 description 2
- 229910052700 potassium Inorganic materials 0.000 description 2
- NROKBHXJSPEDAR-UHFFFAOYSA-M potassium fluoride Chemical compound [F-].[K+] NROKBHXJSPEDAR-UHFFFAOYSA-M 0.000 description 2
- 150000003141 primary amines Chemical class 0.000 description 2
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 2
- 239000000651 prodrug Substances 0.000 description 2
- 229940002612 prodrug Drugs 0.000 description 2
- 235000019260 propionic acid Nutrition 0.000 description 2
- 229940107700 pyruvic acid Drugs 0.000 description 2
- 238000010791 quenching Methods 0.000 description 2
- IUVKMZGDUIUOCP-BTNSXGMBSA-N quinbolone Chemical compound O([C@H]1CC[C@H]2[C@H]3[C@@H]([C@]4(C=CC(=O)C=C4CC3)C)CC[C@@]21C)C1=CCCC1 IUVKMZGDUIUOCP-BTNSXGMBSA-N 0.000 description 2
- 230000002285 radioactive effect Effects 0.000 description 2
- 229960004889 salicylic acid Drugs 0.000 description 2
- 125000002914 sec-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 2
- 238000002603 single-photon emission computed tomography Methods 0.000 description 2
- 125000001424 substituent group Chemical group 0.000 description 2
- 229910052717 sulfur Chemical group 0.000 description 2
- 239000011593 sulfur Chemical group 0.000 description 2
- 229940066769 systemic antihistamines substituted alkylamines Drugs 0.000 description 2
- 239000011975 tartaric acid Substances 0.000 description 2
- 235000002906 tartaric acid Nutrition 0.000 description 2
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 2
- 230000001225 therapeutic effect Effects 0.000 description 2
- 125000005270 trialkylamine group Chemical group 0.000 description 2
- 125000005259 triarylamine group Chemical group 0.000 description 2
- 229940086542 triethylamine Drugs 0.000 description 2
- LWIHDJKSTIGBAC-UHFFFAOYSA-K tripotassium phosphate Chemical compound [K+].[K+].[K+].[O-]P([O-])([O-])=O LWIHDJKSTIGBAC-UHFFFAOYSA-K 0.000 description 2
- YFTHZRPMJXBUME-UHFFFAOYSA-N tripropylamine Chemical compound CCCN(CCC)CCC YFTHZRPMJXBUME-UHFFFAOYSA-N 0.000 description 2
- BWHDROKFUHTORW-UHFFFAOYSA-N tritert-butylphosphane Chemical compound CC(C)(C)P(C(C)(C)C)C(C)(C)C BWHDROKFUHTORW-UHFFFAOYSA-N 0.000 description 2
- FOYXZVHDLXZETB-LBPRGKRZSA-N (2s)-2-(benzylazaniumyl)-3-(1h-imidazol-5-yl)propanoate Chemical compound C([C@@H](C(=O)O)NCC=1C=CC=CC=1)C1=CNC=N1 FOYXZVHDLXZETB-LBPRGKRZSA-N 0.000 description 1
- 125000003837 (C1-C20) alkyl group Chemical group 0.000 description 1
- 125000006653 (C1-C20) heteroaryl group Chemical group 0.000 description 1
- 125000004178 (C1-C4) alkyl group Chemical group 0.000 description 1
- 125000004209 (C1-C8) alkyl group Chemical group 0.000 description 1
- 125000006656 (C2-C4) alkenyl group Chemical group 0.000 description 1
- 125000006376 (C3-C10) cycloalkyl group Chemical group 0.000 description 1
- 125000006652 (C3-C12) cycloalkyl group Chemical group 0.000 description 1
- 125000006654 (C3-C12) heteroaryl group Chemical group 0.000 description 1
- 125000006651 (C3-C20) cycloalkyl group Chemical group 0.000 description 1
- 125000005913 (C3-C6) cycloalkyl group Chemical group 0.000 description 1
- 125000006552 (C3-C8) cycloalkyl group Chemical group 0.000 description 1
- 125000006655 (C3-C8) heteroaryl group Chemical group 0.000 description 1
- ASOKPJOREAFHNY-UHFFFAOYSA-N 1-Hydroxybenzotriazole Chemical compound C1=CC=C2N(O)N=NC2=C1 ASOKPJOREAFHNY-UHFFFAOYSA-N 0.000 description 1
- 238000005160 1H NMR spectroscopy Methods 0.000 description 1
- FPQQSJJWHUJYPU-UHFFFAOYSA-N 3-(dimethylamino)propyliminomethylidene-ethylazanium;chloride Chemical compound Cl.CCN=C=NCCCN(C)C FPQQSJJWHUJYPU-UHFFFAOYSA-N 0.000 description 1
- 125000005917 3-methylpentyl group Chemical group 0.000 description 1
- IQTHEAQKKVAXGV-UHFFFAOYSA-N 4-ditert-butylphosphanyl-n,n-dimethylaniline Chemical compound CN(C)C1=CC=C(P(C(C)(C)C)C(C)(C)C)C=C1 IQTHEAQKKVAXGV-UHFFFAOYSA-N 0.000 description 1
- 230000035502 ADME Effects 0.000 description 1
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 description 1
- 241000370685 Arge Species 0.000 description 1
- 125000003358 C2-C20 alkenyl group Chemical group 0.000 description 1
- 125000000882 C2-C6 alkenyl group Chemical group 0.000 description 1
- 125000004648 C2-C8 alkenyl group Chemical group 0.000 description 1
- 125000000041 C6-C10 aryl group Chemical group 0.000 description 1
- KZBUYRJDOAKODT-UHFFFAOYSA-N Chlorine Chemical compound ClCl KZBUYRJDOAKODT-UHFFFAOYSA-N 0.000 description 1
- ZAMOUSCENKQFHK-UHFFFAOYSA-N Chlorine atom Chemical compound [Cl] ZAMOUSCENKQFHK-UHFFFAOYSA-N 0.000 description 1
- PXGOKWXKJXAPGV-UHFFFAOYSA-N Fluorine Chemical compound FF PXGOKWXKJXAPGV-UHFFFAOYSA-N 0.000 description 1
- 101000997835 Homo sapiens Tyrosine-protein kinase JAK1 Proteins 0.000 description 1
- 101000997832 Homo sapiens Tyrosine-protein kinase JAK2 Proteins 0.000 description 1
- 101000934996 Homo sapiens Tyrosine-protein kinase JAK3 Proteins 0.000 description 1
- 206010061218 Inflammation Diseases 0.000 description 1
- 241000124008 Mammalia Species 0.000 description 1
- ZKGNPQKYVKXMGJ-UHFFFAOYSA-N N,N-dimethylacetamide Chemical compound CN(C)C(C)=O.CN(C)C(C)=O ZKGNPQKYVKXMGJ-UHFFFAOYSA-N 0.000 description 1
- 229930040373 Paraformaldehyde Natural products 0.000 description 1
- KEAYESYHFKHZAL-UHFFFAOYSA-N Sodium Chemical compound [Na] KEAYESYHFKHZAL-UHFFFAOYSA-N 0.000 description 1
- VMHLLURERBWHNL-UHFFFAOYSA-M Sodium acetate Chemical compound [Na+].CC([O-])=O VMHLLURERBWHNL-UHFFFAOYSA-M 0.000 description 1
- 239000012317 TBTU Substances 0.000 description 1
- DHXVGJBLRPWPCS-UHFFFAOYSA-N Tetrahydropyran Chemical compound C1CCOCC1 DHXVGJBLRPWPCS-UHFFFAOYSA-N 0.000 description 1
- 102000000887 Transcription factor STAT Human genes 0.000 description 1
- 108050007918 Transcription factor STAT Proteins 0.000 description 1
- YZCKVEUIGOORGS-NJFSPNSNSA-N Tritium Chemical compound [3H] YZCKVEUIGOORGS-NJFSPNSNSA-N 0.000 description 1
- 102100033438 Tyrosine-protein kinase JAK1 Human genes 0.000 description 1
- 102100033444 Tyrosine-protein kinase JAK2 Human genes 0.000 description 1
- 102100025387 Tyrosine-protein kinase JAK3 Human genes 0.000 description 1
- 238000002441 X-ray diffraction Methods 0.000 description 1
- 241000289690 Xenarthra Species 0.000 description 1
- CLZISMQKJZCZDN-UHFFFAOYSA-N [benzotriazol-1-yloxy(dimethylamino)methylidene]-dimethylazanium Chemical compound C1=CC=C2N(OC(N(C)C)=[N+](C)C)N=NC2=C1 CLZISMQKJZCZDN-UHFFFAOYSA-N 0.000 description 1
- 230000004913 activation Effects 0.000 description 1
- 230000010933 acylation Effects 0.000 description 1
- 238000005917 acylation reaction Methods 0.000 description 1
- 230000006978 adaptation Effects 0.000 description 1
- 238000013019 agitation Methods 0.000 description 1
- 125000005428 anthryl group Chemical group [H]C1=C([H])C([H])=C2C([H])=C3C(*)=C([H])C([H])=C([H])C3=C([H])C2=C1[H] 0.000 description 1
- 208000006673 asthma Diseases 0.000 description 1
- 125000005873 benzo[d]thiazolyl group Chemical group 0.000 description 1
- 125000001164 benzothiazolyl group Chemical group S1C(=NC2=C1C=CC=C2)* 0.000 description 1
- 235000019445 benzyl alcohol Nutrition 0.000 description 1
- 125000002619 bicyclic group Chemical group 0.000 description 1
- IPWKHHSGDUIRAH-UHFFFAOYSA-N bis(pinacolato)diboron Chemical compound O1C(C)(C)C(C)(C)OB1B1OC(C)(C)C(C)(C)O1 IPWKHHSGDUIRAH-UHFFFAOYSA-N 0.000 description 1
- 238000006664 bond formation reaction Methods 0.000 description 1
- 125000000484 butyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 125000002837 carbocyclic group Chemical group 0.000 description 1
- 239000011203 carbon fibre reinforced carbon Substances 0.000 description 1
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 1
- 150000001732 carboxylic acid derivatives Chemical class 0.000 description 1
- 210000003855 cell nucleus Anatomy 0.000 description 1
- 230000008859 change Effects 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 239000013000 chemical inhibitor Substances 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 229910052801 chlorine Inorganic materials 0.000 description 1
- 230000001684 chronic effect Effects 0.000 description 1
- 238000004440 column chromatography Methods 0.000 description 1
- 238000001816 cooling Methods 0.000 description 1
- 229910052593 corundum Inorganic materials 0.000 description 1
- 239000010431 corundum Substances 0.000 description 1
- 239000006184 cosolvent Substances 0.000 description 1
- 125000006165 cyclic alkyl group Chemical group 0.000 description 1
- 125000000392 cycloalkenyl group Chemical group 0.000 description 1
- 125000001995 cyclobutyl group Chemical group [H]C1([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 1
- 125000000113 cyclohexyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 description 1
- USVZFSNDGFNNJT-UHFFFAOYSA-N cyclopenta-1,4-dien-1-yl(diphenyl)phosphane (2,3-dichlorocyclopenta-1,4-dien-1-yl)-diphenylphosphane iron(2+) Chemical compound [Fe++].c1cc[c-](c1)P(c1ccccc1)c1ccccc1.Clc1c(cc[c-]1Cl)P(c1ccccc1)c1ccccc1 USVZFSNDGFNNJT-UHFFFAOYSA-N 0.000 description 1
- 125000001511 cyclopentyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 1
- 125000001559 cyclopropyl group Chemical group [H]C1([H])C([H])([H])C1([H])* 0.000 description 1
- DEZRYPDIMOWBDS-UHFFFAOYSA-N dcm dichloromethane Chemical compound ClCCl.ClCCl DEZRYPDIMOWBDS-UHFFFAOYSA-N 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- ZOCHARZZJNPSEU-UHFFFAOYSA-N diboron Chemical compound B#B ZOCHARZZJNPSEU-UHFFFAOYSA-N 0.000 description 1
- 238000006471 dimerization reaction Methods 0.000 description 1
- UXGNZZKBCMGWAZ-UHFFFAOYSA-N dimethylformamide dmf Chemical compound CN(C)C=O.CN(C)C=O UXGNZZKBCMGWAZ-UHFFFAOYSA-N 0.000 description 1
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 1
- 238000009826 distribution Methods 0.000 description 1
- WDUDHEOUGWAKFD-UHFFFAOYSA-N ditert-butyl(cyclopenta-2,4-dien-1-yl)phosphane;iron(2+) Chemical compound [Fe+2].CC(C)(C)P(C(C)(C)C)C1=CC=C[CH-]1.CC(C)(C)P(C(C)(C)C)C1=CC=C[CH-]1 WDUDHEOUGWAKFD-UHFFFAOYSA-N 0.000 description 1
- 239000002552 dosage form Substances 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 230000004064 dysfunction Effects 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 230000007613 environmental effect Effects 0.000 description 1
- 238000010931 ester hydrolysis Methods 0.000 description 1
- 230000032050 esterification Effects 0.000 description 1
- 238000005886 esterification reaction Methods 0.000 description 1
- 150000002148 esters Chemical class 0.000 description 1
- OCLXJTCGWSSVOE-UHFFFAOYSA-N ethanol etoh Chemical compound CCO.CCO OCLXJTCGWSSVOE-UHFFFAOYSA-N 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- 230000029142 excretion Effects 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 125000003983 fluorenyl group Chemical group C1(=CC=CC=2C3=CC=CC=C3CC12)* 0.000 description 1
- 239000011737 fluorine Substances 0.000 description 1
- 229910052731 fluorine Inorganic materials 0.000 description 1
- 125000001188 haloalkyl group Chemical group 0.000 description 1
- 230000026030 halogenation Effects 0.000 description 1
- 238000005658 halogenation reaction Methods 0.000 description 1
- 125000004051 hexyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- BHEPBYXIRTUNPN-UHFFFAOYSA-N hydridophosphorus(.) (triplet) Chemical compound [PH] BHEPBYXIRTUNPN-UHFFFAOYSA-N 0.000 description 1
- 150000002430 hydrocarbons Chemical group 0.000 description 1
- 238000005984 hydrogenation reaction Methods 0.000 description 1
- 238000007327 hydrogenolysis reaction Methods 0.000 description 1
- 230000007062 hydrolysis Effects 0.000 description 1
- 238000006460 hydrolysis reaction Methods 0.000 description 1
- NPZTUJOABDZTLV-UHFFFAOYSA-N hydroxybenzotriazole Substances O=C1C=CC=C2NNN=C12 NPZTUJOABDZTLV-UHFFFAOYSA-N 0.000 description 1
- 238000003384 imaging method Methods 0.000 description 1
- 150000002466 imines Chemical class 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 125000003453 indazolyl group Chemical group N1N=C(C2=C1C=CC=C2)* 0.000 description 1
- 230000001939 inductive effect Effects 0.000 description 1
- 239000003701 inert diluent Substances 0.000 description 1
- 230000004054 inflammatory process Effects 0.000 description 1
- 229910003480 inorganic solid Inorganic materials 0.000 description 1
- 230000003993 interaction Effects 0.000 description 1
- 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 description 1
- 125000002183 isoquinolinyl group Chemical group C1(=NC=CC2=CC=CC=C12)* 0.000 description 1
- 230000005445 isotope effect Effects 0.000 description 1
- 230000000155 isotopic effect Effects 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 239000012280 lithium aluminium hydride Substances 0.000 description 1
- 210000004072 lung Anatomy 0.000 description 1
- COTNUBDHGSIOTA-UHFFFAOYSA-N meoh methanol Chemical compound OC.OC COTNUBDHGSIOTA-UHFFFAOYSA-N 0.000 description 1
- 229910052751 metal Inorganic materials 0.000 description 1
- 239000002184 metal Substances 0.000 description 1
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 1
- 239000012046 mixed solvent Substances 0.000 description 1
- 125000002950 monocyclic group Chemical group 0.000 description 1
- 150000004682 monohydrates Chemical class 0.000 description 1
- WHQSYGRFZMUQGQ-UHFFFAOYSA-N n,n-dimethylformamide;hydrate Chemical compound O.CN(C)C=O WHQSYGRFZMUQGQ-UHFFFAOYSA-N 0.000 description 1
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- XLQWJXJJLULKSL-UHFFFAOYSA-N n-methyl-n-(pentyliminomethylideneamino)methanamine;hydrochloride Chemical compound Cl.CCCCCN=C=NN(C)C XLQWJXJJLULKSL-UHFFFAOYSA-N 0.000 description 1
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001624 naphthyl group Chemical group 0.000 description 1
- QJGQUHMNIGDVPM-UHFFFAOYSA-N nitrogen group Chemical group [N] QJGQUHMNIGDVPM-UHFFFAOYSA-N 0.000 description 1
- 231100000252 nontoxic Toxicity 0.000 description 1
- 230000003000 nontoxic effect Effects 0.000 description 1
- 238000010943 off-gassing Methods 0.000 description 1
- 239000012044 organic layer Substances 0.000 description 1
- 239000003960 organic solvent Substances 0.000 description 1
- 230000001151 other effect Effects 0.000 description 1
- 229910052763 palladium Inorganic materials 0.000 description 1
- LXNAVEXFUKBNMK-UHFFFAOYSA-N palladium(II) acetate Substances [Pd].CC(O)=O.CC(O)=O LXNAVEXFUKBNMK-UHFFFAOYSA-N 0.000 description 1
- UQPUONNXJVWHRM-UHFFFAOYSA-N palladium;triphenylphosphane Chemical compound [Pd].C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1 UQPUONNXJVWHRM-UHFFFAOYSA-N 0.000 description 1
- 229920002866 paraformaldehyde Polymers 0.000 description 1
- 239000008194 pharmaceutical composition Substances 0.000 description 1
- 229910000073 phosphorus hydride Inorganic materials 0.000 description 1
- 230000026731 phosphorylation Effects 0.000 description 1
- 238000006366 phosphorylation reaction Methods 0.000 description 1
- 239000011698 potassium fluoride Substances 0.000 description 1
- 235000003270 potassium fluoride Nutrition 0.000 description 1
- 229910000160 potassium phosphate Inorganic materials 0.000 description 1
- 235000011009 potassium phosphates Nutrition 0.000 description 1
- LPNYRYFBWFDTMA-UHFFFAOYSA-N potassium tert-butoxide Chemical compound [K+].CC(C)(C)[O-] LPNYRYFBWFDTMA-UHFFFAOYSA-N 0.000 description 1
- VBKNTGMWIPUCRF-UHFFFAOYSA-M potassium;fluoride;hydrofluoride Chemical compound F.[F-].[K+] VBKNTGMWIPUCRF-UHFFFAOYSA-M 0.000 description 1
- 238000001556 precipitation Methods 0.000 description 1
- 238000011045 prefiltration Methods 0.000 description 1
- 230000004647 pro-inflammatory pathway Effects 0.000 description 1
- 125000004368 propenyl group Chemical group C(=CC)* 0.000 description 1
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 125000000561 purinyl group Chemical group N1=C(N=C2N=CNC2=C1)* 0.000 description 1
- 125000003226 pyrazolyl group Chemical group 0.000 description 1
- 125000002098 pyridazinyl group Chemical group 0.000 description 1
- 125000004076 pyridyl group Chemical group 0.000 description 1
- 125000000714 pyrimidinyl group Chemical group 0.000 description 1
- 125000002943 quinolinyl group Chemical group N1=C(C=CC2=CC=CC=C12)* 0.000 description 1
- 230000035484 reaction time Effects 0.000 description 1
- 102000005962 receptors Human genes 0.000 description 1
- 108020003175 receptors Proteins 0.000 description 1
- 238000006479 redox reaction Methods 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- 238000006722 reduction reaction Methods 0.000 description 1
- 238000006268 reductive amination reaction Methods 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 229920006395 saturated elastomer Polymers 0.000 description 1
- 229930195734 saturated hydrocarbon Natural products 0.000 description 1
- 238000013341 scale-up Methods 0.000 description 1
- 230000011664 signaling Effects 0.000 description 1
- 239000001632 sodium acetate Substances 0.000 description 1
- 235000017281 sodium acetate Nutrition 0.000 description 1
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 1
- 235000017557 sodium bicarbonate Nutrition 0.000 description 1
- 239000012279 sodium borohydride Substances 0.000 description 1
- 229910000033 sodium borohydride Inorganic materials 0.000 description 1
- 229910000029 sodium carbonate Inorganic materials 0.000 description 1
- 239000012312 sodium hydride Substances 0.000 description 1
- 229910000104 sodium hydride Inorganic materials 0.000 description 1
- 239000001488 sodium phosphate Substances 0.000 description 1
- 229910000162 sodium phosphate Inorganic materials 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 238000003756 stirring Methods 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- SEEPANYCNGTZFQ-UHFFFAOYSA-N sulfadiazine Chemical compound C1=CC(N)=CC=C1S(=O)(=O)NC1=NC=CC=N1 SEEPANYCNGTZFQ-UHFFFAOYSA-N 0.000 description 1
- 238000010189 synthetic method Methods 0.000 description 1
- WHRNULOCNSKMGB-UHFFFAOYSA-N tetrahydrofuran thf Chemical compound C1CCOC1.C1CCOC1 WHRNULOCNSKMGB-UHFFFAOYSA-N 0.000 description 1
- 231100001274 therapeutic index Toxicity 0.000 description 1
- 238000003354 tissue distribution assay Methods 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- IMNIMPAHZVJRPE-UHFFFAOYSA-N triethylenediamine Chemical compound C1CN2CCN1CC2 IMNIMPAHZVJRPE-UHFFFAOYSA-N 0.000 description 1
- DLQYXUGCCKQSRJ-UHFFFAOYSA-N tris(furan-2-yl)phosphane Chemical compound C1=COC(P(C=2OC=CC=2)C=2OC=CC=2)=C1 DLQYXUGCCKQSRJ-UHFFFAOYSA-N 0.000 description 1
- RYFMWSXOAZQYPI-UHFFFAOYSA-K trisodium phosphate Chemical compound [Na+].[Na+].[Na+].[O-]P([O-])([O-])=O RYFMWSXOAZQYPI-UHFFFAOYSA-K 0.000 description 1
- 229910052722 tritium Inorganic materials 0.000 description 1
- 125000001493 tyrosinyl group Chemical group [H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
- 238000010626 work up procedure Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/04—Ortho-condensed systems
Definitions
- the disclosure is directed to compounds which are useful as intermediates for the preparation of Janus kinase (JAK) inhibitors, and to processes for preparing the JAK inhibitors and intermediate compounds.
- JAK Janus kinase
- the JAK family comprises four members, JAK1, JAK2, JAK3, and tyrosine kinase 2 (TYK2). Binding of cytokine to a JAK-dependent cytokine receptor induces receptor dimerization which results in phosphorylation of tyrosine residues on the JAK kinase, effecting JAK activation. Phosphorylated JAKs, in turn, bind and phosphorylate various STAT proteins, which dimerize, internalize in the cell nucleus, and directly modulate gene transcription, leading, among other effects, to the downstream effects associated with inflammatory disease.
- the JAKs usually associate with cytokine receptors in pairs as homodimers or heterodimers.
- Each of the four members of the JAK family is implicated in the signaling of at least one of the cytokines associated with inflammation. Consequently, a chemical inhibitor with pan-activity against all members of the JAK family could modulate a broad range of pro-inflammatory pathways that contribute to inflammatory diseases, such as severe asthma, COPD, Chronic Lung Allograft Dysfunction (CLAD), and/or Irritable Bowel Disease (IBD). It would, therefore, be desirable to have an efficient process for preparing specific JAK inhibitors.
- the present disclosure provides processes for preparing Compound I, or a pharmaceutically acceptable salt or solvate thereof, and intermediates for the preparation of Compound I (used interchangeably with Compound of Formula I or Formula I), or a pharmaceutically acceptable salt or solvate thereof.
- Compound I has the following chemical structure: [0005]
- Bn is benzyl (-CH 2 -C 6 H 5 ); as described herein.
- provided is a crystalline form of compound X-1 dihydrochloride salt of formula: wherein Bn is -CH 2 -C 6 H 5 .
- FIG.1A shows an X-ray powder diffractogram of crystalline compound X-12HCl salt.
- FIG.1B shows a thermogravimetric analysis for crystalline compound X-12HCl salt.
- FIG.2A shows an X-ray powder diffractogram of crystalline compound X-2.
- FIG.2B shows a thermogravimetric analysis for crystalline compound X-2.
- FIG.3A shows an X-ray powder diffractogram of crystalline compound X-5.
- FIG.3B shows a thermogravimetric analysis for crystalline compound X-5.
- FIG.4A shows an X-ray powder diffractogram of crystalline compound X-6.
- FIG.4B shows a thermogravimetric analysis for crystalline compound X-6.
- FIG.5A shows an X-ray powder diffractogram of crystalline compound X-8, 2.5X pTSA salt.
- FIG.5B shows a thermogravimetric analysis for crystalline compound X-8, 2.5X pTSA salt.
- FIG.6A shows an X-ray powder diffractogram of crystalline compound X-11.
- FIG.6B shows a thermogravimetric analysis for crystalline compound X-11.
- the synthetic methods described herein allow for synthesis of Compound I in fewer steps and with improved purity. Previous protocols for the synthesis of Compound I led to telescoping of unwanted regioisomers such as compounds Z-1, Z-2, Z-5, and/or Z-8.
- the methods described herein comprise the use of a single regioisomer of benzyl histidine, compound X-10, thereby reducing or eliminating unwanted regioisomers in subsequent steps, and improving atom economy and yield. Further, the methods described herein minimize the use of column chromatography, which renders the methods more amenable to manufacturing scale up. The present methods provide improved yields and purity while also reducing the overall cost of the process of synthesis of Compound I.
- the methods described herein reduce the occurrence of impurities such as Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, and/or Z-12.
- impurities such as Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, and/or Z-12.
- the term “about” includes the indicated amount ⁇ 1%. Also, the term “about X” includes description of “X”. Also, the singular forms “a” and “the” include plural references unless the context clearly dictates otherwise. Thus, e.g., reference to “the compound” includes a plurality of such compounds and reference to “the assay” includes reference to one or more assays and equivalents thereof known to those skilled in the art. [0029] Some of the compounds exist as tautomers. Tautomers are in equilibrium with one another. For example, amide containing compounds may exist in equilibrium with imidic acid tautomers.
- the compounds are understood by one of ordinary skill in the art to comprise all possible tautomers, e.g., amide containing compounds are understood to comprise both amide and imidic acid tautomers.
- the amide containing compounds are understood to include their imidic acid tautomers.
- the imidic acid containing compounds are understood to include their amide tautomers.
- Any formula or structure given herein, is also intended to represent unlabeled forms as well as isotopically labeled forms of the compounds. Isotopically labeled compounds have structures depicted by selected atomic mass or mass number.
- isotopes examples include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine and chlorine, such as, but not limited to 2 H (deuterium, D), 3 H (tritium), 11 C, 13 C, 14 C, 15 N, 18 F, 31 P, 32 P, 35 S, 36 Cl and 125 I.
- Various isotopically labeled compounds of the present disclosure include, for example, those into which radioactive isotopes, such as 3 H and 14 C, are incorporated.
- Such isotopically labelled compounds may be useful, for example, in metabolic studies, reaction kinetic studies, detection or imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT) including drug or substrate tissue distribution assays or in radioactive treatment of patients.
- PET positron emission tomography
- SPECT single-photon emission computed tomography
- the disclosure also includes “deuterated analogs” of Compound I and intermediates thereof in which from 1 to n hydrogens attached to a carbon atom is/are replaced by deuterium, in which n is the number of hydrogens in the molecule.
- Such compounds exhibit increased resistance to metabolism and are thus useful for increasing the half-life of Compound I when administered to a mammal, particularly a human.
- Deuterium labelled or substituted therapeutic compounds of the disclosure may have improved DMPK (drug metabolism and pharmacokinetics) properties, relating to distribution, metabolism and excretion (ADME). Substitution with heavier isotopes such as deuterium may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life, reduced dosage requirements and/or an improvement in therapeutic index.
- DMPK drug metabolism and pharmacokinetics
- An 18 F labeled compound may be useful for PET or SPECT studies.
- Isotopically labeled compounds of this disclosure and prodrugs thereof can generally be prepared by carrying out the procedures disclosed in the schemes or in the examples and preparations described below by substituting a readily available isotopically labeled reagent for a non- isotopically labeled reagent. It is understood that deuterium in this context is regarded as a substituent in the compound of Formula I and intermediates thereof. [0033] The concentration of such a heavier isotope, specifically deuterium, may be defined by an isotopic enrichment factor. In the compounds of this disclosure, any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom.
- the compounds of this disclosure are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto.
- pharmaceutically acceptable salts, hydrates, solvates, tautomeric forms, polymorphs, and prodrugs of the compounds described herein are also pharmaceutically acceptable salts, hydrates, solvates, tautomeric forms, polymorphs, and prodrugs of the compounds described herein. “Pharmaceutically acceptable” or “physiologically acceptable” refer to compounds, salts, compositions, dosage forms and other materials which are useful in preparing a pharmaceutical composition that is suitable for veterinary or human pharmaceutical use.
- Salts of compounds or intermediates include, for instance, salts with inorganic acids and salts with an organic acid.
- base addition salts can be prepared from inorganic and organic bases. Salts derived from inorganic acids include hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like.
- Salts derived from organic acids include acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluene-sulfonic acid, salicylic acid, and the like.
- Salts derived from inorganic bases include, by way of example only, sodium, potassium, lithium, ammonium, calcium and magnesium salts.
- Salts derived from organic bases include, but are not limited to, salts of primary, secondary and tertiary amines, such as alkyl amines (i.e., NH2(alkyl)), dialkyl amines (i.e., HN(alkyl)2), trialkyl amines (i.e., N(alkyl)3), substituted alkyl amines (i.e., NH2(substituted alkyl)), di(substituted alkyl) amines (i.e., HN(substituted alkyl)2), tri(substituted alkyl) amines (i.e., N(substituted alkyl)3), alkenyl amines (i.e., NH2(alkenyl)), dialkenyl amines (i.e., HN(alkenyl)2), trialkenyl amines (i.e., N(alkeny
- Suitable amines include, by way of example only, isopropylamine, trimethyl amine, diethyl amine, tri(iso-propyl) amine, tri(n-propyl) amine, ethanolamine, 2-dimethylaminoethanol, piperazine, piperidine, morpholine, N-ethylpiperidine, and the like.
- pharmaceutically acceptable salt of Compound I refers to salts that retain the biological effectiveness and properties of the given compound, and which are not biologically or for example, salts with inorganic acids and salts with an organic acid.
- the free base can be obtained by basifying a solution of the acid salt.
- an addition salt particularly a pharmaceutically acceptable addition salt
- a suitable organic solvent may be used to dissolve the free base in a suitable organic solvent.
- acid addition salts may be prepared from inorganic and organic acids. Salts derived from inorganic acids include hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like.
- Salts derived from organic acids include acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluene-sulfonic acid, salicylic acid, and the like.
- pharmaceutically acceptable base addition salts can be prepared from inorganic and organic bases. Salts derived from inorganic bases include, by way of example only, sodium, potassium, lithium, ammonium, calcium and magnesium salts.
- Salts derived from organic bases include, but are not limited to, salts of primary, secondary and tertiary amines, such as alkyl amines (i.e., NH2(alkyl)), dialkyl amines (i.e., HN(alkyl)2), trialkyl amines (i.e., N(alkyl)3), substituted alkyl amines (i.e., NH2(substituted alkyl)), di(substituted alkyl) amines (i.e., HN(substituted alkyl)2), tri(substituted alkyl) amines (i.e., N(substituted alkyl)3), alkenyl amines (i.e., NH2(alkenyl)), dialkenyl amines (i.e., HN(alkenyl)2), trialkenyl amines (i.e., N(alkeny
- Suitable amines include, by way of example only, isopropylamine, trimethyl amine, diethyl amine, tri(iso-propyl) amine, tri(n-propyl) amine, ethanolamine, 2-dimethylaminoethanol, piperazine, piperidine, morpholine, N-ethylpiperidine, and the like.
- Cu-v indicates that the following group has from u to v carbon atoms.
- C1-6 alkyl indicates that the alkyl group has from 1 to 6 carbon atoms.
- Alkyl refers to an unbranched or branched saturated hydrocarbon chain.
- alkyl has 1 to 20 carbon atoms (i.e., C 1-20 alkyl), 1 to 8 carbon atoms (i.e., C 1-8 alkyl), 1 to 6 carbon atoms (i.e., C 1-6 alkyl), or 1 to 4 carbon atoms (i.e., C 1-4 alkyl).
- alkyl groups include methyl, ethyl, hexyl, 3-hexyl, and 3-methylpentyl.
- butyl includes n-butyl (i.e. -(CH 2 ) 3 CH 3 ), sec-butyl (i.e. -CH(CH 3 )CH 2 CH 3 ), isobutyl (i.e. -CH 2 CH(CH 3 ) 2 ) and tert-butyl (i.e. -C(CH 3 ) 3 ); and “propyl” includes n-propyl (i.e. -(CH 2 ) 2 CH 3 ) and isopropyl (i.e.
- Alkenyl refers to an alkyl group containing at least one carbon-carbon double bond and having from 2 to 20 carbon atoms (i.e., C 2-20 alkenyl), 2 to 8 carbon atoms (i.e., C 2-8 alkenyl), 2 to 6 carbon atoms (i.e., C 2-6 alkenyl), or 2 to 4 carbon atoms (i.e., C 2-4 alkenyl).
- alkenyl groups include ethenyl, propenyl, butadienyl (including 1,2-butadienyl and 1,3-butadienyl).
- Amino refers to the group -NR y R z wherein R y and R z are independently selected from the group consisting of hydrogen, alkyl, haloalkyl, aryl, or heteroaryl; each of which may be optionally substituted.
- Aryl refers to an aromatic carbocyclic group having a single ring (e.g. monocyclic) or multiple rings (e.g. bicyclic or tricyclic) including fused systems.
- aryl has 6 to 20 ring carbon atoms (i.e., C6-20 aryl), 6 to 12 carbon ring atoms (i.e., C6-12 aryl), or 6 to 10 carbon ring atoms (i.e., C6-10 aryl).
- aryl groups include phenyl, naphthyl, fluorenyl, and anthryl. Aryl, however, does not encompass or overlap in any way with heteroaryl defined below. If one or more aryl groups are fused with a heteroaryl, the resulting ring system is heteroaryl. If one or more aryl groups are fused with a heterocyclyl, the resulting ring system is heterocyclyl.
- Cycloalkyl refers to a saturated or partially unsaturated cyclic alkyl group having a single ring or multiple rings including fused, bridged, and spiro ring systems.
- the term “cycloalkyl” includes cycloalkenyl groups (i.e. the cyclic group having at least one double bond).
- cycloalkyl has from 3 to 20 ring carbon atoms (i.e., C3-20 cycloalkyl), 3 to 12 ring carbon atoms (i.e., C3-12 cycloalkyl), 3 to 10 ring carbon atoms (i.e., C3-10 cycloalkyl), 3 to 8 ring carbon atoms (i.e., C3-8 cycloalkyl), or 3 to 6 ring carbon atoms (i.e., C3-6 cycloalkyl).
- Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
- Heteroaryl refers to an aromatic group having a single ring, multiple rings, or multiple fused rings, with one or more ring heteroatoms independently selected from nitrogen, oxygen, and sulfur.
- heteroaryl includes 1 to 20 ring carbon atoms (i.e., C1-20 heteroaryl), 3 to 12 ring carbon atoms (i.e., C 3-12 heteroaryl), or 3 to 8 carbon ring atoms (i.e., C 3-8 heteroaryl); and 1 to 5 heteroatoms, 1 selected from nitrogen, oxygen, and sulfur.
- heteroaryl groups include pyrimidinyl, purinyl, pyridyl, pyridazinyl, benzothiazolyl, and pyrazolyl.
- fused-heteroaryl rings include, but are not limited to, benzo[d]thiazolyl, quinolinyl, isoquinolinyl, benzo[b]thiophenyl, indazolyl, benzo[d]imidazolyl, pyrazolo[1,5-a]pyridinyl, and imidazo[1,5-a]pyridinyl, where the heteroaryl can be bound via either ring of the fused system.
- a “solvate” is formed by the interaction of a solvent and a compound. Solvates of salts of the compounds described herein are also provided. Suitable solvates are pharmaceutically acceptable solvates, such as hydrates, including monohydrates and hemi-hydrates. Accordingly, hydrates of the compounds described herein are also provided. [0046] In some embodiments, when used to describe chemical reactions as described herein, the term “reacting ...
- reaction conditions include, but are not limited to, one or more of following: reaction temperature, solvent, pH, pressure, reaction time, mole ratio of reactants, mole ratio of reagents, the presence of a base or acid, catalyst, radiation, concentration, etc.
- reaction conditions may be named after the particular chemical reaction in which the conditions are employed, such as, coupling conditions, hydrogenation conditions, acylation conditions, reduction conditions, halogenation conditions etc. Reaction conditions for most reactions are generally known to those skilled in the art or may be readily obtained from the literature.
- reaction conditions sufficient for performing the chemical transformations provided herein may be found throughout the present disclosure, and in particular, the examples below. It is also contemplated that the reaction conditions may include reagents in addition to those listed in the specific reaction.
- reaction conditions is intended to refer to the physical and/or environmental conditions under which a chemical reaction proceeds.
- a “catalyst” refers to an agent that increases the rate of a chemical reaction. Non-limiting examples of a catalyst are as described herein. in conjunction therewith.
- reducing agent refers to an element or compound that loses an electron to an a reactant in a redox reaction.
- Reducing agents increase the electron density on carbon centers, either by bond formation between the carbon and a less electronegative atom, or by bond breaking between the carbon and a more electronegative atom. Reducing agents usually accomplish this change in electron density by the addition of hydrogen, or the substitution of hydrogen for an electronegative atom on the carbon center.
- “Crystalline form”, “polymorph”, “Form”, and “form” may be used interchangeably herein, and are meant to include all crystalline forms of a compound, including, for example, polymorphs, pseudopolymorphs, salts, solvates, hydrates, unsolvated polymorphs (including anhydrates), and conformational polymorphs of the compounds, as well as mixtures thereof, unless a particular crystalline form is referred to.
- Compounds of the present disclosure include crystalline forms of those compounds, including, for example, polymorphs, pseudopolymorphs, salts, solvates, hydrates, unsolvated polymorphs (including anhydrates), and conformational polymorphs of the compounds, as well as mixtures thereof.
- the term “substantially” when referring, for example, to an X-ray diffraction pattern or a TGA trace includes a pattern or trace that is not necessarily identical to those depicted herein, but that falls within the limits of experimental error or deviations when considered by one of ordinary skill in the art.
- List of Abbreviations and Acronyms Abbreviation Meaning %a/a Percent area over area °C Degree Celsius ACN Acetonitrile aq.
- a “compound of Formula” may also be referred to herein as a “compound” of that formula number.
- compound of Formula X-1 may also refer to “compound X-1”
- compound of Formula X-2 may also refer to “compound X-2,” etc.
- a compound of Formula X-3 is compound X-3-a:
- step (a) provides less than 3% of a compound of Formula Z-4: .
- step (a) provides a composition comprising less than 1% of a compound of Formula Z-3, less than 3% of a compound of Formula Z-4, and less than 0.5% of a compound of Formula Z-5:
- step (a) provides a composition comprising compound X-1, wherein the composition is at least 95% pure. In some embodiments, step (a) provides a composition comprising compound X-1, wherein the composition is at least 96% pure. In some embodiments, step (a) provides a composition comprising compound X-1, wherein the composition is at least 97% pure.
- the amount of impurities present in a composition i.e. the purity of a product
- the salt of compound X-1 is a dihydrochloride salt.
- the dihydrochloride salt of compound X-1 is formed by extracting a free base form of compound X-1 into isopropyl acetate (iPAc), conducting a solvent swap to obtain the free base form of compound X-1 in isopropyl alcohol (IPA), and adding an excess of HCl in dioxane.
- extracting the free base form and conducting a solvent swap may be carried out according to methods as described herein.
- step (a) is conducted in the presence of a catalyst, wherein the catalyst in step (a) is Pd(AmPhos) 2 Cl 2 .
- the catalyst is present in an amount of about 3 to 5 mole percent, based on moles of compound X-1. from K 2 CO 3 or Cs 2 CO 3 .
- the proces further comprises compound X-1, or a salt thereof, being debenzylated (i.e. removal of the Bn groups) to provide the compound of Formula X-4 or a salt thereof.
- the debenzylation conditions i.e.
- the reaction conditions for preparing compound X-4 by removing the Bn groups of compound X-1) comprise Pd/C, H 2 , and HCl.
- the salt of compound X-4 obtained is a dihydrochloride salt.
- the salt of compound X-4 is a trihydrochloride salt.
- the salt of compound of Formula X-4 is a dihydrochloride salt or trihydrochloride salt.
- the compound of Formula X-2, or a salt thereof is prepared by reacting a compound of Formula X-5: with hydrazine to provide the comp
- the hydrazine is hydrazine hydrate.
- the hydrazine is a solution of hydrazine in THF. solvent, wherein the solvent is dioxane, and wherein the reaction is conducted in an inert atmosphere. Inert atmospheres may be achieved according to methods known in the art.
- the compound of Formula X-5 comprises less than 1% of the compound of Formula Z-5:
- the process (of preparing compound X-2) provides a composition comprising compound X-2, wherein the composition is at least 97% pure.
- the process (of preparing compound X-2) provides a composition comprising compound X-2, wherein the composition is at least 98% pure.
- the compound of Formula X-5, or a salt thereof is prepared by reacting a compound of Formula X-6: or a salt thereof, with a compound of Fo u a - : to provide the compound of Formula X-5.
- the reaction of compound X-6 with compound X-7 is quenched with water.
- the compound of Formula X-6, or a salt thereof is prepared by reacting a compound of Formula X-8: or a salt thereof, with acetone in the presence of an acid and a reducing agent to provide the compound of Formula X-6.
- the compound of Formula X-8 is a 2.5 p-toluene sulfonic acid (2.5xpTSA) salt of compound of Formula X-8.
- the reaction of compound X-8 with acetone is conducted in the presence of trifluoroacetic acid (TFA) and sodium tricetoxyborohydride (STAB). In some embodiments, the reaction is stirred at room temperature.
- the reaction is stirred at temperatures ranging from about 20 °C to about 40 °C.
- the reaction of compound X-8 with acetone gives rise to less than 5% of a compound of Formula Z-7 (i.e. in a composition comprising a compound X-6): .
- a process fo nd of Formula I,: or a pharmaceutically acceptable salt or solvate thereof comprising: (a) reacting a compound of Formula X-8: or a salt thereof, wherein Bn is -CH 2 -C 6 H 5 ; with acetone in the presence of an acid and a reducing agent to provide a compound of Formula X-6: or a salt thereof; (b) reacting compound X-6, or a salt thereof, with a compound of Formula X-7: to provide a compound of Formula X-5: or a salt thereof; (c) reacting compound X-5, or a salt thereof, with hydrazine to provide a compound of Formula X-2: or a salt thereof, (d) reacting compound X-2, or a salt thereof, with a compound of Formula X-3: wherein R 1 and R 2 are each ind yl, or R 1 and R 2 , together with
- compositions comprising Compound I: or a pharmaceutically acce n 3% by weight of any of the following compounds: -4; 0 ; [0087] In some embodiments, provided herein is a composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 96% purity (e.g. less than 4% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present).
- composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 97% purity (e.g. less than 3% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present). In some embodiments, provided herein is a composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 98% purity (e.g. less than 2% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present). [0088] Provided herein is Compound I prepared by any process described herein.
- Compound I hydrate prepared by any process described herein.
- a crystalline form of a dihydrochloride salt of compound X-1 characterized by a powder X-ray diffraction pattern (XRPD) comprising diffraction peaks at 2 ⁇ values of 10.70 ⁇ 0.2, 11.03 ⁇ 0.2, 13.39 ⁇ 0.2, and 16.08 ⁇ 0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- XRPD powder X-ray diffraction pattern
- the XRPD of the dihydrochloride salt of compound X-1 further comprises diffraction peaks at 2 ⁇ values of 7.29 ⁇ 0.2, 9.64 ⁇ 0.2, 14.41 ⁇ 0.2, 17.20 ⁇ 0.2, and 18.18 ⁇ 0.2.
- the crystalline form of the dihydrochloride salt of compound X-1 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 1A.
- the crystalline form of the dihydrochloride salt of compound X-1 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 1B.
- Table 1 shows observed XRPD 2 ⁇ peak positions and d-spacings for a crystalline form of a dihydrochloride salt of compound X-1 (crystalline compound X-1 • 2HCl).
- Table 1 2 ⁇ d( ⁇ ) Height % Area Area %
- compound of Formula X-2 or a salt thereof, wherein Bn is -C
- a crystalline form of a free base of compound X-2 characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2 ⁇ values of 5.57 ⁇ 0.2, 12.68 ⁇ 0.2, 13.37 ⁇ 0.2, and 14.14 ⁇ 0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- the XRPD of the crystalline form of the free base of compound X-2 further comprises diffraction peaks at 2 ⁇ values of 7.38 ⁇ 0.2, 8.07 ⁇ 0.2, 9.81 ⁇ 0.2, 10.15 ⁇ 0.2, and 12.31 ⁇ 0.2.
- the crystalline form of the free base of compound X-2 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 2A.
- the crystalline form of the free base of compound X-2 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 2B.
- Table 2 shows observed XRPD 2 ⁇ peak positions and d-spacings for a crystalline form of a free base of compound X-2.
- Table 2 2 ⁇ d( ⁇ ) Height % Area Area % 9.38 9.01 1.0 0.2 1.3
- Bn is -CH
- a crystalline form of a free base of the compound X-5 characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2 ⁇ values of 10.95 ⁇ 0.2, 18.92 ⁇ 0.2, and 20.20 ⁇ 0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- the XRPD of the crystalline form of the free base of the compound X-5 further comprises diffraction peaks at 2 ⁇ values of 9.29 ⁇ 0.2, and 16.45 ⁇ 0.2.
- the crystalline form of the free base of the compound X-5 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 3A.
- the crystalline form of the free base of the compound X-5 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 3B. free base of the compound X-5.
- the crystalline form of a free base of compound X-6 is characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2 ⁇ values of 7.50 ⁇ 0.2, 13.45 ⁇ 0.2, and 15.00 ⁇ 0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- the XRPD of the crystalline form of the free base of compound X-6 further comprises diffraction peaks at 2 ⁇ values of 6.73 ⁇ 0.2, 10.44 ⁇ 0.2, and 20.01 ⁇ 0.2.
- the crystalline form of the free base of compound X-6 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 4A.
- the crystalline form of the free base of compound X-6 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 4B.
- Table 4 shows observed XRPD 2 ⁇ peak positions and d-spacings for a crystalline form of the free base of compound X-6.
- Table 4 2 ⁇ d( ⁇ ) Height % Area Area % 20.01 4.24 11.2 11.1 10.9
- Bn is -CH2-C6H5.
- the salt of compound X-8 is a di-para toluene sulfonic acid salt.
- the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2 ⁇ values of 5.30 ⁇ 0.2, 10.58 ⁇ 0.2, and 15.02 ⁇ 088, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- the XRPD of the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 further comprises diffraction peaks at 2 ⁇ values of 18.55 ⁇ 0.2, and 21.22 ⁇ 0.2.
- the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 5A.
- the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 5B.
- Table 5 shows observed XRPD 2 ⁇ peak positions and d-spacings for a crystalline form of a di- para toluene sulfonic acid salt of compound X-8 (compound X-8 • 2.5 pTSA).
- a crystalline form of compound X-11 . - or a salt thereof, wherein Bn is -CH 2 -C 6 H 5 ; ⁇ 0.2, 9.52 ⁇ 0.2, 14.53 ⁇ 0.2, and 16.33 ⁇ 0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 ⁇ .
- the XRPD of the crystalline form of compound X-11 further comprises diffraction peaks at 2 ⁇ values of 17.92 ⁇ 0.2, and 18.37 ⁇ 0.2.
- the crystalline form of compound X-11 is characterized by a powder X- ray diffraction pattern substantially as shown in Figure 6A.
- the crystalline form of compound X-11 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 6B.
- Synthesis of the Compounds The compounds may be prepared using the methods disclosed herein and routine modifications. Typical embodiments of the processes described herein are shown in the general reaction schemes described below. It will be apparent given the description herein that the general schemes may be altered by substitution of the starting materials and/or other reagents known to one of skill in the art. Starting materials are typically obtained from commercial sources or synthesized using published methods.
- Scheme 1 [0123] Referring to Scheme 1, compound X-10 (wherein, in Scheme 1, R is H) is prepared using published literature procedures as described in, e.g., Tetrahedron, Vol.52, No.15, pp.5363-5370, 1996.
- compound X-10 is prepared using published protocols. Cyclization of compound X-10 to compound X-11 is achieved in the presence of a base (e.g., DIPEA). Other suitable of crystalline X-11, as described in Example 1. In some embodiments, the reaction is conducted in methanol. Other suitable solvents and anti-solvents are contemplated within the scope of this disclosure. The reaction is conducted at temperatures ranging from about room temperature to about reflux temperature of the solvent. In some embodiments, the reaction is conducted at temperatures ranging from about 60 °C to about 80 °C.
- a base e.g., DIPEA
- Other suitable of crystalline X-11 as described in Example 1.
- the reaction is conducted in methanol. Other suitable solvents and anti-solvents are contemplated within the scope of this disclosure.
- the reaction is conducted at temperatures ranging from about room temperature to about reflux temperature of the solvent. In some embodiments, the reaction is conducted at temperatures ranging from about 60 °C to about 80 °C.
- the pH of the reaction mixture is adjusted to about 10 by use of, e.g., ammonium hydroxide, and a mixture of water and acetone is used as an anti-solvent during the work up of the reaction, thereby inducing crystal formation and/or purification of the product X-11.
- Esterification of compound X-11 is achieved in the presence of an acid and a solvent such as dichloromethane, chloroform or other suitable solvents. It was found that the use of pTSA allows for superior yields and addition of iPrOAc as an antisolvent allows for filtration of the product X-8 as shown in Example 2.
- the reaction is conducted in the presence of an excess of pTSA and at a temperature ranging from about room temperature to about the reflux temperature of the solvent.
- a hydride source e.g., a borohydride such as STAB
- an acid e.g., trifluoroacetic acid
- suitable hydride sources may be used such as sodium hydride, sodium borohydride, or lithium aluminum hydride. It is believed that the acid such as TFA acts as an acid to facilitate imine formation, and also as a cosolvent to help all reactants stay in solution.
- the reaction is conducted at a temperature ranging from about room temperature to about 40 °C. In some embodiments, the reaction is conducted at about 20 °C or at about room temperature. The reaction is stirred for a period ranging from about 2 hours to about 24 hours. It was found that the stirring the reaction for a longer duration reduces the occurrence of compound Z-7: -7.
- a base such as triethylamine.
- Other suitable bases such as methylamine, ethylene diamine, or diisorpropyl ethyl amine may be used. Any solvent including and not limited to DCM, ACN, or THF may be used.
- Suitable palladium catalysts include bis(di-tert-butyl(4- dimethylaminophenyl)phosphine)dichloropalladium(II), tris(dibenzylideneacetone)dipalladium(0) (Pd2dba3), palladium (II) acetate (Pd(OAc)2), dichloro(1,1’-bis(diphenylphosphino)- ferrocene)dipalladium(II) (Pd(dppf)Cl2), dichloro bis(triphenylphosphine)-palladium(II) (Pd(PPh3)2Cl2), bis(di-tert-butyl(4-dimethylaminophenyl)
- Phosphine ligands useful in the reaction bis(diphenylphosphino)-ferrocene (dppf), 1,1'-bis(di-tert-butylphosphino)ferrocene, tri(2-furyl)phosphine, 1,3-bis(diphenylphosphino)propane (dppp), 1,5-bis(diphenylphosphino)pentane (dpppe), tri-tert- butylphosphine (P(t-Bu) 3 ), Bis(di-tert-butyl(4-dimethylaminophenyl)phosphine (AmPhos), and 9,9-dimethyl-4,5- bis(diphenylphosphino)xanthene (Xantphos).
- An additional catalyst may be used.
- the additional catalyst may be a diboron reagent.
- the additional catalyst may be tetrahydroxydiboron (Bis Boric Acid (BBA)), a diboronic ester or the product of the reaction of bis(pinacolato)diboron with potassium fluoride hydrofluoride.
- BBA Bis Boric Acid
- Typical bases for the coupling reaction include potassium fluoride, cesium carbonate, and cesium fluoride.
- sodium carbonate, potassium carbonate, sodium phosphate, potassium phosphate, sodium acetate, potassium tert-butoxide, 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), or 1,4- diazabicyclo[2.2.2]octane (DABCO) can be used for the base.
- the reaction is typically conducted in an inert diluent, such as tetrahydrofuran, N,N-dimethylformamide, N,N-dimethylacetamide, or N- methylpyrrolidone.
- Suitable mixed solvent systems include tetrahydrofuran and water, tetrahydrofuran and N,N-dimethylformamide, tetrahydrofuran and N-methylpyrrolidone, acetone and water, ethanol and water, and isopropanol and water.
- the reaction is conducted at reflux temperatures or lower.
- the reaction is conducted at temperatures ranging from about 50 °C to about 100 °C. It was found that reaction temperatures of about 85 °C to about 95 °C, or about 88 °C to about 90 °C, reduced the occurrence of compounds Z-3 and Z-4.
- a solvent swap allowed for crystallization of compound X-1, as shown in Example 6.
- Suitable amide coupling reagents include and are not limited to dicyclohexylcarbodiimide (DCC), diisopropylcarbodiimide (DIC), ethyl-(N’,N’- dimethylamino)propylcarbodiimide hydrochloride (EDCI), 1-hydroxybenzotriazole (HOBt), (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP), (benzotriazol-1- yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyBOP), (7aAzabenzotriazol-1- yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyAOP), Bromotripyrrolidinophosphonium hexafluorophosphate (PyBrOP), bis(2-oxo-3-oxazolidinyl)phos
- the samples were scanned in 2 ⁇ -2 ⁇ mode from 2° to 35° in 2 ⁇ with a step size of 0.02° and a scan speed of 0.30°seconds per step.
- the data acquisition was controlled by Bruker DiffracSuite measurement software and analyzed by Jade software (version 7.7).
- the instrument was calibrated with a corundum standard, within ⁇ 0.02° two-theta angle.
- Thermogravimetric analysis (TGA) measurements were performed using a TA Instruments Model Q-50 module equipped with high resolution capability. Data were collected using TA Instruments Thermal Analyst controller and analyzed using TA Instruments Universal Analysis software. A weighed temperature to 360 °C. The balance and furnace chambers were purged with nitrogen flow during use.
- the first reactor R1 was rinsed with minimal MeOH (248 mL, 1.5V), and the contents transferred to the second reactor R2.
- the slurry in the second reactor R2 was cooled to 5 °C over 2 h and held for no less than 12 h.
- the slurry was filtered and rinsed with cold (5-10 °C) acetone (990 mL, 6V).
- the cake was blown dry under nitrogen for 3 h, then dried in vacuum (>27 in Hg) at 50 °C to afford 167.442 g of compound X-11 (97 % yield, 99.66% HPLC purity).
- the aqueous phase was drained and collected in a second reactor (R2) equipped with a mechanical agitator.
- iPAc 600 mL, 6V
- the top organic phase was combined with the top organic phase in the first reactor (R1).
- R2 was cleaned and used in the following step. biphasic mixture was stirred for no less than 30 min and settled for no less than 1 h.
- the bottom aqueous phase was drained.
- the organic layer was concentrated to 300 mL/3V by vacuum distillation and transferred to a clean reactor (R2) through a filter to remove precipitated inorganic solids.
- the first reactor was charged with toluene (100 mL, 1V), followed by heptane (100 mL, 1V). This solution was used to rinse forward through the filter into the clean reactor (R2).
- the temperature of the reactor (R2) was adjusted to 20 °C and heptane (2500 mL, 25V) was added over no less than 1.5 h. The clear solution became hazy after ⁇ 400 mL/4V heptane added, and seeds (1 g, 0.01X) were charged to R2.
- the seed crystals of X-6 were prepared by crystallizing X-6, which may be made according to methods described herein without seeding, from a mixture of toluene and heptane at 20 °C. Heptane addition was continued after seed charge, generating a free-flowing white slurry. After heptane addition, the slurry was cooled to -5 °C internal temperature and held for no less than 12 h. The slurry was filtered and rinsed forward from R2 with heptane (600 mL, 6V). The filter cake was blown dry under nitrogen for 3 h before drying under vacuum (>27 inHg) at 50 °C to afford X-6 (44 g, 88% yield, 98.41% HPLC purity).
- X-7 (91 g, 385 mmol) and DCM (500 mL, 5V) were charged to a nitrogen- flushed glass jacketed reactor (R2) equipped with overhead mixing and the temperature was adjusted to 20 °C. of R2 at 20-25 °C (mild exotherm). R2 was rinsed forward to R1 with DCM (100 mL, 1V) through the same transfer line. The contents of R2 were stirred at 20 °C for no less than 1.5 h, whereupon HPLC indicated >99.5% conversion to product. Water (700 mL, 7.0V) was charged to R1, controlling the internal temperature at 20-25 °C.
- the biphasic mixture was stirred rapidly for no less than 3h, till HPLC %a/a indicated conversion of X-7 to the corresponding carboxylic acid. [0150] Agitation of the mixture was halted and phases were allowed to separate out and settle for no less than 15 minutes. The bottom organic phase was collected in a separate vessel (V1). DCM (300 mL, 3V) was charged to V1. The mixture was agitated for no less than 15 min and settled for no less than 30 min to allow phases to separate. The bottom organic phase was collected and combined with the original organic phase. The aqueous phase was drained, and the combined organics returned to V1.
- V1 The contents of V1 were distilled under vacuum (-21 inHg, 45 °C jacket) to a target volume of 3V (300 mL). After the target volume was achieved, V1 was backfilled with nitrogen and IPA (1700 mL, 17V) was charged to V1. The contents of V1 were distilled under vacuum (-27.5 inHg, 55 °C jacket) to a target volume of 12.5 V (1250 mL). After the target volume was achieved, V1 was backfilled with nitrogen and the temperature of the contents was adjusted to 45 °C. [0152] Seeds (0.005X, 0.5 g) were charged and the mixture agitated at 45 °C for no less than 1 h, by which time a thick slurry had formed.
- the seed crystals of X-5 were prepared by crystallizing X-5 (made according to methods described herein) from a mixture of isopropyl alcohol and water at 5 °C. The slurry was cooled to 20 °C over no less than 45 min. Water (550 mL, 5.5V) was added to the slurry over no less than 2 h while maintaining the internal temperature at 20-25 °C. The slurry was cooled to 5 °C over no less than 1 h, and then held at 5 °C for no less than 12 h. The slurry was transferred to a filter, and the wet cake collected.
- R1 was washed forward to rinse the cake with a premixed solution of IPA (700 mL, 7V) and H2O (300 mL, 3V), which was precooled to 5 °C.
- IPA 700 mL, 7V
- H2O 300 mL, 3V
- the light yellow/tan colored cake was blown dry under nitrogen for 3 h before drying under vacuum ( ⁇ 27 inHg) at 50 °C to afford X-5 (138.3 g, 91% yield, 98.85% HPLC purity).
- the temperature of the mixture was adjusted to 70 °C [0155] H 2 O (945 mL, 7V) was charged over no less than 30 min. Then seeds (0.675 g, 0.005X) were added and the solution was stirred for no less than 30 minutes while a thin seed bed formed.
- the seed crystals of X-2 were prepared by crystallizing X-2 (made according to methods described herein) from ethanol at 5 °C. The slurry was cooled to 5 °C over no less than 6 h, and held at 5 °C for no less than 2.5 h.
- the slurry was filtered and rinsed forward from R1 with a premixed solution of EtOH (486 mL, 3.6V) and H 2 O (324 mL, 2.4V), precooled to 5 °C.
- the filter cake was blown dry under nitrogen for 3 h before drying under vacuum ( ⁇ 27 inHg) at 60 °C to afford X-2 (124.752 g, 93% yield, 98.7% HPLC purity).
- Dioxane (300 mL, 6V) was charged to a separate nitrogen-flushed glass reactor equipped with overhead mixing (R2) equipped with overhead mixing.
- the dioxane was degassed by vacuum ( ⁇ 50 torr) and nitrogen backfill cycles (3X).
- the degassed dioxane was transferred from R2 into R1 by nitrogen pressure transfer.
- K 2 CO 3 23.64g, 171 mmol
- H 2 O 165 mL, 3.3V
- the degassed base solution was transferred from R2 into R1 by nitrogen pressure transfer, forming a yellow biphasic slurry in R1.
- R1 was degassed by vacuum ( ⁇ 50 torr) and nitrogen backfill cycles (3X).
- the internal temperature of R1 was adjusted to 88 °C, forming a red-orange biphasic slurry, and the mixture was held at 88 °C (reflux) for no less than 20 h, at which time HPLC %a/a indicated >99% conversion of the starting material to product.
- HCl/dioxane (66.3 mL, 1.33V) was then added to R1 over 10 minutes. The homogenous solution turned from dark orange to yellow throughout the addition.
- IPAc (900 mL, 18V) was added to R1 dropwise over 2 h while maintaining an internal temperature of 80 C. After ⁇ 400 mL/4V of the IPAc was added, seeds (0.5 g, 0.01X) were added and a slurry began to form.
- the seed crystals of X-1 were prepared by crystallizing X-1 (made according to methods described herein) from a mixture of isopropyl alcohol, HCl/dioxane and isopropyl acetate at 10 °C.
- the slurry was held at 80 °C for 4 h after the complete addition of iPAc, then cooled to 20 °C internal temperature over 5 h and held at this temperature for no less than 20 h.
- the slurry was filtered and rinsed forward from R1 with a premixed solution of IPA (125 mL, 2.5V) and iPAc (375 mL, 7.5V).
- the filter cake was blown dry under nitrogen for 3 h before drying under vacuum ( ⁇ 27 inHg) at 45 °C to afford X-1 •2HCl (62.58 g, 93% yield, 97.22% HPLC purity).
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
Abstract
The present disclosure relates generally to compounds which are useful as intermediates for the preparation of Janus kinase (JAK) inhibitors, and to processes for preparing the JAK inhibitors and intermediate compounds.
Description
PROCESS FOR PREPARING JAK INHIBITORSAND INTERMEDIATES THEREOF
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit under 35 U.S.C. §119(e) of United States Provisional Application No. 63/346,108, filed May 26, 2022, which is hereby incorporated by reference in its entirety.
FIELD
[0002] The disclosure is directed to compounds which are useful as intermediates for the preparation of Janus kinase (JAK) inhibitors, and to processes for preparing the JAK inhibitors and intermediate compounds.
BACKGROUND
[0003] The JAK family comprises four members, JAK1, JAK2, JAK3, and tyrosine kinase 2 (TYK2). Binding of cytokine to a JAK-dependent cytokine receptor induces receptor dimerization which results in phosphorylation of tyrosine residues on the JAK kinase, effecting JAK activation. Phosphorylated JAKs, in turn, bind and phosphorylate various STAT proteins, which dimerize, internalize in the cell nucleus, and directly modulate gene transcription, leading, among other effects, to the downstream effects associated with inflammatory disease. The JAKs usually associate with cytokine receptors in pairs as homodimers or heterodimers. Each of the four members of the JAK family is implicated in the signaling of at least one of the cytokines associated with inflammation. Consequently, a chemical inhibitor with pan-activity against all members of the JAK family could modulate a broad range of pro-inflammatory pathways that contribute to inflammatory diseases, such as severe asthma, COPD, Chronic Lung Allograft Dysfunction (CLAD), and/or Irritable Bowel Disease (IBD). It would, therefore, be desirable to have an efficient process for preparing specific JAK inhibitors.
SUMMARY
[0004] The present disclosure, in one embodiment, provides processes for preparing Compound I, or a pharmaceutically acceptable salt or solvate thereof, and intermediates for the preparation of Compound I (used interchangeably with Compound of Formula I or Formula I), or a pharmaceutically acceptable salt or solvate thereof. Compound I has the following chemical structure:
[0005] In some embodiments, provided is a process for preparing a compound of Formula X-1:
or a salt thereof, wherein Bn is benzyl (-CH2-C6H5); as described herein. [0006] In some embodiments, provided is a crystalline form of compound X-1 dihydrochloride salt of formula:
wherein Bn is -CH2-C6H5. [0007] In some embodiments, provided is a compound of Formula X-2:
or a salt thereof, wherein Bn is -CH2-C6H5. [0008] In some embodiments, provided is a compound of Formula X-5: or a salt thereof, wherein Bn is -CH
[0009] In some embodiments, provided is a compound of Formula X-6: or a salt thereof, wherein Bn is -CH2-C6
[0010] In some embodiments, provided is a compound of Formula X-8:
or a salt thereof, wherein Bn is -CH2-C6H5. [0011] In some embodiments, provided is a crystalline form of compound X-11 .
- or a salt thereof, wherein Bn is -CH2-C6H5.
[0012] FIG.1A shows an X-ray powder diffractogram of crystalline compound X-12HCl salt. [0013] FIG.1B shows a thermogravimetric analysis for crystalline compound X-12HCl salt. [0014] FIG.2A shows an X-ray powder diffractogram of crystalline compound X-2. [0015] FIG.2B shows a thermogravimetric analysis for crystalline compound X-2. [0016] FIG.3A shows an X-ray powder diffractogram of crystalline compound X-5. [0017] FIG.3B shows a thermogravimetric analysis for crystalline compound X-5. [0018] FIG.4A shows an X-ray powder diffractogram of crystalline compound X-6. [0019] FIG.4B shows a thermogravimetric analysis for crystalline compound X-6. [0020] FIG.5A shows an X-ray powder diffractogram of crystalline compound X-8, 2.5X pTSA salt. [0021] FIG.5B shows a thermogravimetric analysis for crystalline compound X-8, 2.5X pTSA salt. [0022] FIG.6A shows an X-ray powder diffractogram of crystalline compound X-11. [0023] FIG.6B shows a thermogravimetric analysis for crystalline compound X-11. DETAILED DESCRIPTION [0024] The synthetic methods described herein allow for synthesis of Compound I in fewer steps and with improved purity. Previous protocols for the synthesis of Compound I led to telescoping of unwanted regioisomers such as compounds Z-1, Z-2, Z-5, and/or Z-8. The methods described herein comprise the use of a single regioisomer of benzyl histidine, compound X-10, thereby reducing or eliminating unwanted regioisomers in subsequent steps, and improving atom economy and yield. Further, the methods described herein minimize the use of column chromatography, which renders the methods more amenable to manufacturing scale up. The present methods provide improved yields and purity while also reducing the overall cost of the process of synthesis of Compound I. In some embodiments, the methods described herein reduce the occurrence of impurities such as Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, and/or Z-12.
[0025] The following description sets forth exemplary embodiments of the present technology. It should be recognized, however, that such description is not intended as a limitation on the scope of the present disclosure but is instead provided as a description of exemplary embodiments. [0026] As used in the present specification, the following words, phrases and symbols are generally intended to have the meanings as set forth below, except to the extent that the context in which they are used indicates otherwise. [0027] A dash (“-”) that is not between two letters or symbols is used to indicate a point of attachment for a substituent. For example, -C(O)NH2 is attached through the carbon atom. A dash at the front or end
of a chemical group is a matter of convenience; chemical groups may be depicted with or without one or more dashes without losing their ordinary meaning. A wavy line drawn through a line in a structure indicates a point of attachment of a group. Unless chemically or structurally required, no directionality is indicated or implied by the order in which a chemical group is written or named. [0028] Reference to “about” a value or parameter herein includes (and describes) embodiments that are directed to that value or parameter per se. In certain embodiments, the term “about” includes the indicated amount ± 10%. In other embodiments, the term “about” includes the indicated amount ± 5%. In certain other embodiments, the term “about” includes the indicated amount ± 1%. Also, the term “about X” includes description of “X”. Also, the singular forms “a” and “the” include plural references unless the context clearly dictates otherwise. Thus, e.g., reference to "the compound" includes a plurality of such compounds and reference to “the assay” includes reference to one or more assays and equivalents thereof known to those skilled in the art. [0029] Some of the compounds exist as tautomers. Tautomers are in equilibrium with one another. For example, amide containing compounds may exist in equilibrium with imidic acid tautomers. Regardless of which tautomer is shown, and regardless of the nature of the equilibrium among tautomers, the compounds are understood by one of ordinary skill in the art to comprise all possible tautomers, e.g., amide containing compounds are understood to comprise both amide and imidic acid tautomers. Thus, the amide containing compounds are understood to include their imidic acid tautomers. Likewise, the imidic acid containing compounds are understood to include their amide tautomers. [0030] Any formula or structure given herein, is also intended to represent unlabeled forms as well as isotopically labeled forms of the compounds. Isotopically labeled compounds have structures depicted by
selected atomic mass or mass number. Examples of isotopes that can be incorporated into compounds of the disclosure include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine and chlorine, such as, but not limited to 2H (deuterium, D), 3H (tritium), 11C, 13C, 14C, 15N, 18F, 31P, 32P, 35S, 36Cl and 125I. Various isotopically labeled compounds of the present disclosure include, for example, those into which radioactive isotopes, such as 3H and 14C, are incorporated. Such isotopically labelled compounds may be useful, for example, in metabolic studies, reaction kinetic studies, detection or imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT) including drug or substrate tissue distribution assays or in radioactive treatment of patients. [0031] The disclosure also includes “deuterated analogs” of Compound I and intermediates thereof in which from 1 to n hydrogens attached to a carbon atom is/are replaced by deuterium, in which n is the number of hydrogens in the molecule. Such compounds exhibit increased resistance to metabolism and are thus useful for increasing the half-life of Compound I when administered to a mammal, particularly a human. See, for example, Foster, “Deuterium Isotope Effects in Studies of Drug Metabolism,” Trends Pharmacol. Sci.5(12):524-527 (1984). Such compounds are synthesized by means well known in the art, for example by employing starting materials in which one or more hydrogens have been replaced by deuterium. [0032] Deuterium labelled or substituted therapeutic compounds of the disclosure may have improved DMPK (drug metabolism and pharmacokinetics) properties, relating to distribution, metabolism and excretion (ADME). Substitution with heavier isotopes such as deuterium may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life, reduced dosage requirements and/or an improvement in therapeutic index. An 18F labeled compound may be useful for PET or SPECT studies. Isotopically labeled compounds of this disclosure and prodrugs thereof can generally be prepared by carrying out the procedures disclosed in the schemes or in the examples and preparations described below by substituting a readily available isotopically labeled reagent for a non- isotopically labeled reagent. It is understood that deuterium in this context is regarded as a substituent in the compound of Formula I and intermediates thereof. [0033] The concentration of such a heavier isotope, specifically deuterium, may be defined by an isotopic enrichment factor. In the compounds of this disclosure, any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom. Unless otherwise stated, when a position is designated specifically as “H” or “hydrogen”, the position is understood to have hydrogen at
specifically designated as a deuterium (D) is meant to represent deuterium. [0034] In many cases, the compounds of this disclosure are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto. [0035] Provided are also pharmaceutically acceptable salts, hydrates, solvates, tautomeric forms, polymorphs, and prodrugs of the compounds described herein. “Pharmaceutically acceptable” or “physiologically acceptable” refer to compounds, salts, compositions, dosage forms and other materials which are useful in preparing a pharmaceutical composition that is suitable for veterinary or human pharmaceutical use. [0036] “Salts” of compounds or intermediates include, for instance, salts with inorganic acids and salts with an organic acid. Similarly, base addition salts can be prepared from inorganic and organic bases. Salts derived from inorganic acids include hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Salts derived from organic acids include acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluene-sulfonic acid, salicylic acid, and the like. Salts derived from inorganic bases include, by way of example only, sodium, potassium, lithium, ammonium, calcium and magnesium salts. Salts derived from organic bases include, but are not limited to, salts of primary, secondary and tertiary amines, such as alkyl amines (i.e., NH2(alkyl)), dialkyl amines (i.e., HN(alkyl)2), trialkyl amines (i.e., N(alkyl)3), substituted alkyl amines (i.e., NH2(substituted alkyl)), di(substituted alkyl) amines (i.e., HN(substituted alkyl)2), tri(substituted alkyl) amines (i.e., N(substituted alkyl)3), alkenyl amines (i.e., NH2(alkenyl)), dialkenyl amines (i.e., HN(alkenyl)2), trialkenyl amines (i.e., N(alkenyl)3), substituted alkenyl amines (i.e., NH2(substituted alkenyl)), di(substituted alkenyl) amines (i.e., HN(substituted alkenyl)2), tri(substituted alkenyl) amines (i.e., N(substituted alkenyl)3, mono-, di- or tri- cycloalkyl amines (i.e., NH2(cycloalkyl), HN(cycloalkyl)2, N(cycloalkyl)3), mono-, di- or tri- arylamines (i.e., NH2(aryl), HN(aryl)2, N(aryl)3), or mixed amines, etc. Specific examples of suitable amines include, by way of example only, isopropylamine, trimethyl amine, diethyl amine, tri(iso-propyl) amine, tri(n-propyl) amine, ethanolamine, 2-dimethylaminoethanol, piperazine, piperidine, morpholine, N-ethylpiperidine, and the like. [0037] The term “pharmaceutically acceptable salt” of Compound I refers to salts that retain the biological effectiveness and properties of the given compound, and which are not biologically or
for example, salts with inorganic acids and salts with an organic acid. In addition, if the compounds described herein are obtained as an acid addition salt, the free base can be obtained by basifying a solution of the acid salt. Conversely, if the product is a free base, an addition salt, particularly a pharmaceutically acceptable addition salt, may be produced by dissolving the free base in a suitable organic solvent and treating the solution with an acid, in accordance with conventional procedures for preparing acid addition salts from base compounds. Those skilled in the art will recognize various synthetic methodologies that may be used to prepare nontoxic pharmaceutically acceptable addition salts. Pharmaceutically acceptable acid addition salts may be prepared from inorganic and organic acids. Salts derived from inorganic acids include hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Salts derived from organic acids include acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluene-sulfonic acid, salicylic acid, and the like. Likewise, pharmaceutically acceptable base addition salts can be prepared from inorganic and organic bases. Salts derived from inorganic bases include, by way of example only, sodium, potassium, lithium, ammonium, calcium and magnesium salts. Salts derived from organic bases include, but are not limited to, salts of primary, secondary and tertiary amines, such as alkyl amines (i.e., NH2(alkyl)), dialkyl amines (i.e., HN(alkyl)2), trialkyl amines (i.e., N(alkyl)3), substituted alkyl amines (i.e., NH2(substituted alkyl)), di(substituted alkyl) amines (i.e., HN(substituted alkyl)2), tri(substituted alkyl) amines (i.e., N(substituted alkyl)3), alkenyl amines (i.e., NH2(alkenyl)), dialkenyl amines (i.e., HN(alkenyl)2), trialkenyl amines (i.e., N(alkenyl)3), substituted alkenyl amines (i.e., NH2(substituted alkenyl)), di(substituted alkenyl) amines (i.e., HN(substituted alkenyl)2), tri(substituted alkenyl) amines (i.e., N(substituted alkenyl)3, mono-, di- or tri- cycloalkyl amines (i.e., NH2(cycloalkyl), HN(cycloalkyl)2, N(cycloalkyl)3), mono-, di- or tri- arylamines (i.e., NH2(aryl), HN(aryl)2, N(aryl)3), or mixed amines, etc. Specific examples of suitable amines include, by way of example only, isopropylamine, trimethyl amine, diethyl amine, tri(iso-propyl) amine, tri(n-propyl) amine, ethanolamine, 2-dimethylaminoethanol, piperazine, piperidine, morpholine, N-ethylpiperidine, and the like. [0038] The prefix “Cu-v” indicates that the following group has from u to v carbon atoms. For example, “C1-6 alkyl” indicates that the alkyl group has from 1 to 6 carbon atoms. [0039] “Alkyl” refers to an unbranched or branched saturated hydrocarbon chain. As used herein, alkyl has 1 to 20 carbon atoms (i.e., C1-20 alkyl), 1 to 8 carbon atoms (i.e., C1-8 alkyl), 1 to 6 carbon atoms (i.e., C1-6 alkyl), or 1 to 4 carbon atoms (i.e., C1-4 alkyl). Examples of alkyl groups include methyl, ethyl,
hexyl, 3-hexyl, and 3-methylpentyl. When an alkyl residue having a specific number of carbons is named by chemical name or identified by molecular formula, all positional isomers having that number of carbons may be encompassed; thus, for example, “butyl” includes n-butyl (i.e. -(CH2)3CH3), sec-butyl (i.e. -CH(CH3)CH2CH3), isobutyl (i.e. -CH2CH(CH3)2) and tert-butyl (i.e. -C(CH3)3); and “propyl” includes n-propyl (i.e. -(CH2)2CH3) and isopropyl (i.e. -CH(CH3)2). [0040] “Alkenyl” refers to an alkyl group containing at least one carbon-carbon double bond and having from 2 to 20 carbon atoms (i.e., C2-20 alkenyl), 2 to 8 carbon atoms (i.e., C2-8 alkenyl), 2 to 6 carbon atoms (i.e., C2-6 alkenyl), or 2 to 4 carbon atoms (i.e., C2-4 alkenyl). Examples of alkenyl groups include ethenyl, propenyl, butadienyl (including 1,2-butadienyl and 1,3-butadienyl). [0041] “Amino” refers to the group -NRyRz wherein Ry and Rz are independently selected from the group consisting of hydrogen, alkyl, haloalkyl, aryl, or heteroaryl; each of which may be optionally substituted. [0042] “Aryl” refers to an aromatic carbocyclic group having a single ring (e.g. monocyclic) or multiple rings (e.g. bicyclic or tricyclic) including fused systems. As used herein, aryl has 6 to 20 ring carbon atoms (i.e., C6-20 aryl), 6 to 12 carbon ring atoms (i.e., C6-12 aryl), or 6 to 10 carbon ring atoms (i.e., C6-10 aryl). Examples of aryl groups include phenyl, naphthyl, fluorenyl, and anthryl. Aryl, however, does not encompass or overlap in any way with heteroaryl defined below. If one or more aryl groups are fused with a heteroaryl, the resulting ring system is heteroaryl. If one or more aryl groups are fused with a heterocyclyl, the resulting ring system is heterocyclyl. [0043] “Cycloalkyl” refers to a saturated or partially unsaturated cyclic alkyl group having a single ring or multiple rings including fused, bridged, and spiro ring systems. The term “cycloalkyl” includes cycloalkenyl groups (i.e. the cyclic group having at least one double bond). As used herein, cycloalkyl has from 3 to 20 ring carbon atoms (i.e., C3-20 cycloalkyl), 3 to 12 ring carbon atoms (i.e., C3-12 cycloalkyl), 3 to 10 ring carbon atoms (i.e., C3-10 cycloalkyl), 3 to 8 ring carbon atoms (i.e., C3-8 cycloalkyl), or 3 to 6 ring carbon atoms (i.e., C3-6 cycloalkyl). Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl. [0044] “Heteroaryl” refers to an aromatic group having a single ring, multiple rings, or multiple fused rings, with one or more ring heteroatoms independently selected from nitrogen, oxygen, and sulfur. As used herein, heteroaryl includes 1 to 20 ring carbon atoms (i.e., C1-20 heteroaryl), 3 to 12 ring carbon atoms (i.e., C3-12 heteroaryl), or 3 to 8 carbon ring atoms (i.e., C3-8 heteroaryl); and 1 to 5 heteroatoms, 1
selected from nitrogen, oxygen, and sulfur. Examples of heteroaryl groups include pyrimidinyl, purinyl, pyridyl, pyridazinyl, benzothiazolyl, and pyrazolyl. Examples of the fused-heteroaryl rings include, but are not limited to, benzo[d]thiazolyl, quinolinyl, isoquinolinyl, benzo[b]thiophenyl, indazolyl, benzo[d]imidazolyl, pyrazolo[1,5-a]pyridinyl, and imidazo[1,5-a]pyridinyl, where the heteroaryl can be bound via either ring of the fused system. Any aromatic ring, having a single or multiple fused rings, containing at least one heteroatom, is considered a heteroaryl regardless of the attachment to the remainder of the molecule (i.e., through any one of the fused rings). Heteroaryl does not encompass or overlap with aryl as defined above. [0045] A “solvate” is formed by the interaction of a solvent and a compound. Solvates of salts of the compounds described herein are also provided. Suitable solvates are pharmaceutically acceptable solvates, such as hydrates, including monohydrates and hemi-hydrates. Accordingly, hydrates of the compounds described herein are also provided. [0046] In some embodiments, when used to describe chemical reactions as described herein, the term “reacting ... to provide” refers to “under conditions sufficient to” or “under reaction conditions sufficient to.” The term “under conditions sufficient to” or “under reaction conditions sufficient to” is intended to refer to the reaction conditions under which the desired chemical reaction may proceed. Examples of reaction conditions include, but are not limited to, one or more of following: reaction temperature, solvent, pH, pressure, reaction time, mole ratio of reactants, mole ratio of reagents, the presence of a base or acid, catalyst, radiation, concentration, etc. Reaction conditions may be named after the particular chemical reaction in which the conditions are employed, such as, coupling conditions, hydrogenation conditions, acylation conditions, reduction conditions, halogenation conditions etc. Reaction conditions for most reactions are generally known to those skilled in the art or may be readily obtained from the literature. Exemplary reaction conditions sufficient for performing the chemical transformations provided herein may be found throughout the present disclosure, and in particular, the examples below. It is also contemplated that the reaction conditions may include reagents in addition to those listed in the specific reaction. [0047] The term “reaction conditions” is intended to refer to the physical and/or environmental conditions under which a chemical reaction proceeds. [0048] As used herein, a “catalyst” refers to an agent that increases the rate of a chemical reaction. Non-limiting examples of a catalyst are as described herein.
in conjunction therewith. [0050] The term “reducing agent” refers to an element or compound that loses an electron to an a reactant in a redox reaction. Reducing agents increase the electron density on carbon centers, either by bond formation between the carbon and a less electronegative atom, or by bond breaking between the carbon and a more electronegative atom. Reducing agents usually accomplish this change in electron density by the addition of hydrogen, or the substitution of hydrogen for an electronegative atom on the carbon center. [0051] “Crystalline form”, “polymorph”, “Form”, and “form” may be used interchangeably herein, and are meant to include all crystalline forms of a compound, including, for example, polymorphs, pseudopolymorphs, salts, solvates, hydrates, unsolvated polymorphs (including anhydrates), and conformational polymorphs of the compounds, as well as mixtures thereof, unless a particular crystalline form is referred to. Compounds of the present disclosure include crystalline forms of those compounds, including, for example, polymorphs, pseudopolymorphs, salts, solvates, hydrates, unsolvated polymorphs (including anhydrates), and conformational polymorphs of the compounds, as well as mixtures thereof. [0052] The term “substantially” when referring, for example, to an X-ray diffraction pattern or a TGA trace includes a pattern or trace that is not necessarily identical to those depicted herein, but that falls within the limits of experimental error or deviations when considered by one of ordinary skill in the art. List of Abbreviations and Acronyms Abbreviation Meaning %a/a Percent area over area °C Degree Celsius ACN Acetonitrile aq. Aqueous BBA Bis Boric Acid Bn Benzyl CDI 1,1’-Carbonyldiimidazole DCM Dichloromethane DIPEA Diisopopylethyl acetate
DMA N, N dimethylacetamide DMF N, N-dimethylformamide EtOH Ethanol fwd forward g Grams iPAc or IPAc or Isopropyl acetate iPrOAc IPA Isopropyl alcohol Hrs or h Hours M Molar MeOH methanol mg Milligram MHz Megahertz ml/mL Milliliter mM Millimolar mmol Millimole nL Nanoliter nm Nanometer Org. or org Organic Ph Phenyl pTSA or p-TSA Para toluene sulfonic acid Pd(AmPhos)2Cl2 Bis(Di-Tert-Butyl(4- Dimethylaminophenyl)Phosphine)Dichloropalladium STAB Sodium TriAcetoxy Borohydride TEA Triethyl amine TFA Trifluoroacetic acid THF Tetrahydrofuran μL/ μl Microliter μM Micromolar V Volume(s)
Methods [0053] Compound I, named (S)-(3-(dimethylamino)azetidin-1-yl)(2-(6-(2-ethyl-4-hydroxyphenyl)-1H- indazol-3-yl)-5-isopropyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridin-6-yl)methanone, has the structure shown below. Compound I is described in commonly owned U.S. Patent No.10,947,229. Compound I crystal hydrate is described in commonly owned U.S. Publication No.2021/0269437. Compound I. [0054] Provided her
ein is a process for preparing a compound of Formula X-1:
or a salt thereof, wherein Bn is -CH2-C6H5; comprising: (a) reacting a compound of Formula X-2: or a salt thereof, with a compound
wherein R1 and R2 are each ind lkyl, or R1 and R2, together with the atoms
to which they are attached, form a 5- or 6-membered ring optionally substituted with 1, 2, 3, or 4 C1-3 alkyl; to provide the compound of Formula X-1; and (b) optionally forming a salt of compound of Formula X-1. [0055] As used herein, a “compound of Formula” may also be referred to herein as a “compound” of that formula number. For example, “compound of Formula X-1” may also refer to “compound X-1,” “compound of Formula X-2” may also refer to “compound X-2,” etc. [0056] In some embodiments, a compound of Formula X-3 is compound X-3-a:
[0057] In some embodiments of the process, step (a) provides less than 3% of a compound of Formula Z-4:
. , epared having less than 1% of the compound of Formula Z-1 as an impurity:
[0059] In some embodime ed having less than 1% of the
compound of Formula Z-2 as an impurity: [0060] In some embodiments o
s than 1% of a compound of Formula Z-3 and less than 1% of a compound of Formula Z-3 or Z-4:
[0061] In some embodiments, step (a) provides a composition comprising less than 1% of a compound of Formula Z-3, less than 3% of a compound of Formula Z-4, and less than 0.5% of a compound of Formula Z-5:
[0062] In some embodiments, step (a) provides a composition comprising compound X-1, wherein the composition is at least 95% pure. In some embodiments, step (a) provides a composition comprising compound X-1, wherein the composition is at least 96% pure. In some embodiments, step (a) provides a composition comprising compound X-1, wherein the composition is at least 97% pure. [0063] In some embodiments described herein, the amount of impurities present in a composition (i.e. the purity of a product) can be measured according to methods known in the art, such as identifying the impurity present by HPLC and calculating the amount of such impurity based on measured HPLC area. [0064] In some embodiments of the process, the salt of compound X-1 is a dihydrochloride salt. [0065] In some embodiments of the process, the dihydrochloride salt of compound X-1 is formed by extracting a free base form of compound X-1 into isopropyl acetate (iPAc), conducting a solvent swap to obtain the free base form of compound X-1 in isopropyl alcohol (IPA), and adding an excess of HCl in dioxane. In some embodiments, extracting the free base form and conducting a solvent swap may be carried out according to methods as described herein. [0066] In some embodiments, step (a) is conducted in the presence of a catalyst, wherein the catalyst in step (a) is Pd(AmPhos)2Cl2. In some embodiments, the catalyst is present in an amount of about 3 to 5 mole percent, based on moles of compound X-1.
from K2CO3 or Cs2CO3. [0068] In some embodiments, the proces further comprises compound X-1, or a salt thereof, being debenzylated (i.e. removal of the Bn groups) to provide the compound of Formula X-4
or a salt thereof. [0069] In some embodiments, the debenzylation conditions (i.e. the reaction conditions for preparing compound X-4 by removing the Bn groups of compound X-1) comprise Pd/C, H2, and HCl. In some embodiments, the salt of compound X-4 obtained is a dihydrochloride salt. In some embodiments, the salt of compound X-4 is a trihydrochloride salt. In some embodiments, the salt of compound of Formula X-4 is a dihydrochloride salt or trihydrochloride salt. [0070] In some embodiments, the compound of Formula X-2, or a salt thereof, is prepared by reacting a compound of Formula X-5: with hydrazine to provide the comp
[0071] In some embodiments, the hydrazine is hydrazine hydrate. In some embodiments, the hydrazine is a solution of hydrazine in THF.
solvent, wherein the solvent is dioxane, and wherein the reaction is conducted in an inert atmosphere. Inert atmospheres may be achieved according to methods known in the art. [0073] In some embodiments of the process, the compound of Formula X-5 comprises less than 1% of the compound of Formula Z-5: [0074] In some embodiments of paring compound X-2) provides less
than 1% of the compound of Formula Z-6:
[0075] In some embodiments, the process (of preparing compound X-2) provides a composition comprising compound X-2, wherein the composition is at least 97% pure. In some embodiments, the process (of preparing compound X-2) provides a composition comprising compound X-2, wherein the composition is at least 98% pure. [0076] In some embodiments of the process, the compound of Formula X-5, or a salt thereof, is prepared by reacting a compound of Formula X-6: or a salt thereof, with a compound of Fo
u a - :
to provide the compound of Formula X-5.
[0077] In some embodiments of the process, the reaction of compound X-6 with compound X-7 is quenched with water. [0078] In some embodiments of the process, the compound of Formula X-6, or a salt thereof, is prepared by reacting a compound of Formula X-8:
or a salt thereof, with acetone in the presence of an acid and a reducing agent to provide the compound of Formula X-6. [0079] In some embodiments of the process, the compound of Formula X-8 is a 2.5 p-toluene sulfonic acid (2.5xpTSA) salt of compound of Formula X-8. [0080] In some embodiments, the reaction of compound X-8 with acetone is conducted in the presence of trifluoroacetic acid (TFA) and sodium tricetoxyborohydride (STAB). In some embodiments, the reaction is stirred at room temperature. In some embodiments, the reaction is stirred at temperatures ranging from about 20 °C to about 40 °C. [0081] In some embodiments of the process, the reaction of compound X-8 with acetone gives rise to less than 5% of a compound of Formula Z-7 (i.e. in a composition comprising a compound X-6):
.
than 1% of the compound of Formula Z-8 as an impurity: [0083] Provided herein is a process fo nd of Formula I,:
or a pharmaceutically acceptable salt or solvate thereof, comprising: (a) reacting a compound of Formula X-8:
or a salt thereof, wherein Bn is -CH2-C6H5; with acetone in the presence of an acid and a reducing agent to provide a compound of Formula X-6: or a salt thereof;
(b) reacting compound X-6, or a salt thereof, with a compound of Formula X-7:
to provide a compound of Formula X-5:
or a salt thereof;
(c) reacting compound X-5, or a salt thereof, with hydrazine to provide a compound of Formula X-2: or a salt thereof,
(d) reacting compound X-2, or a salt thereof, with a compound of Formula X-3: wherein R1 and R2 are each ind
yl, or R1 and R2, together with the atoms to which they are attached, form a 5- or 6-membered ring optionally substituted with 1, 2, 3, or 4 C1- 3 alkyl; to provide a compound of Formula X-1:
or a salt thereof; (e) debenzylating compound X-1, or a salt thereof, to provide a compound of Formula X-4:
or a salt thereof; (f) reacting compound X-4, or a salt thereof, with a compound of Formula X-9:
or a salt thereof, to provide the compound of Formula I, or a pharmaceutically acceptable salt or solvate thereof. [0084] In some embodiments, a process for preparing Compound I further comprises recrystallizing compound I from methanol, and exposing compound I to ambient humidity, to provide compound I hydrate of formula:
.
[0085] Conversion of Compound I to Compound I hydrate may be achieved according to methods known in the art. [0086] Provided herein is a composition comprising Compound I: or a pharmaceutically acce
n 3% by weight of any of the following compounds: -4;
0 ;
[0087] In some embodiments, provided herein is a composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 96% purity (e.g. less than 4% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present). In some embodiments, provided herein is a composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 97% purity (e.g. less than 3% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present). In some embodiments, provided herein is a composition comprising Compound I, or a pharmaceutically acceptable salt or solvate thereof, having at least 98% purity (e.g. less than 2% of any of the following compounds: Z-3, Z-4, Z-6, Z-7, Z-9, Z-10, Z-11, or a combination thereof are present). [0088] Provided herein is Compound I prepared by any process described herein. [0089] Provided herein is Compound I hydrate prepared by any process described herein. [0090] Provided herein is a crystalline form of a dihydrochloride salt of compound X-1:
characterized by a powder X-ray diffraction pattern (XRPD) comprising diffraction peaks at 2θ values of 10.70 ±0.2, 11.03 ±0.2, 13.39 ±0.2, and 16.08 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. [0091] In some embodiments, the XRPD of the dihydrochloride salt of compound X-1 further comprises diffraction peaks at 2θ values of 7.29 ±0.2, 9.64 ±0.2, 14.41 ±0.2, 17.20 ±0.2, and 18.18 ±0.2. [0092] In some embodiments, the crystalline form of the dihydrochloride salt of compound X-1 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 1A. [0093] In some embodiments, the crystalline form of the dihydrochloride salt of compound X-1 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 1B. [0094] Table 1 shows observed XRPD 2θ peak positions and d-spacings for a crystalline form of a dihydrochloride salt of compound X-1 (crystalline compound X-1 • 2HCl). Table 1 2 θ d(Å) Height % Area Area %
[0095] Provided herein is compound of Formula X-2: or a salt thereof, wherein Bn is -C
[0096] Provided herein is a crystalline form of a free base of compound X-2, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 5.57 ±0.2, 12.68 ±0.2, 13.37 ±0.2, and 14.14 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. [0097] In some embodiments, the XRPD of the crystalline form of the free base of compound X-2 further comprises diffraction peaks at 2θ values of 7.38 ±0.2, 8.07 ±0.2, 9.81 ±0.2, 10.15 ±0.2, and 12.31 ±0.2. [0098] In some embodiments, the crystalline form of the free base of compound X-2 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 2A. [0099] In some embodiments, the crystalline form of the free base of compound X-2 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 2B. [0100] Table 2 shows observed XRPD 2θ peak positions and d-spacings for a crystalline form of a free base of compound X-2. Table 2 2 θ d(Å) Height % Area Area %
9.38 9.01 1.0 0.2 1.3
[0101] Provided herein is a compound of Formula X-5: or a salt thereof, wherein Bn is -CH
[0102] Provided herein is a crystalline form of a free base of the compound X-5, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 10.95 ±0.2, 18.92 ±0.2, and 20.20 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. [0103] In some embodiments, the XRPD of the crystalline form of the free base of the compound X-5 further comprises diffraction peaks at 2θ values of 9.29 ±0.2, and 16.45 ±0.2. [0104] In some embodiments, the crystalline form of the free base of the compound X-5 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 3A. [0105] In some embodiments, the crystalline form of the free base of the compound X-5 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 3B.
free base of the compound X-5. Table 3 2 θ d(Å) Height % Area Area % 548 1541 122 24 105
[0107] Provided herein is a compound of Formula X-6
[0108] In some embodimetns, the crystalline form of a free base of compound X-6 is characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 7.50 ±0.2, 13.45 ±0.2, and 15.00 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. [0109] In some embodimetns, the XRPD of the crystalline form of the free base of compound X-6 further comprises diffraction peaks at 2θ values of 6.73 ±0.2, 10.44 ±0.2, and 20.01 ±0.2. [0110] In some embodimetns, the crystalline form of the free base of compound X-6 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 4A. [0111] In some embodimetns, the crystalline form of the free base of compound X-6 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 4B. [0112] Table 4 shows observed XRPD 2θ peak positions and d-spacings for a crystalline form of the free base of compound X-6. Table 4 2 θ d(Å) Height % Area Area %
20.01 4.24 11.2 11.1 10.9
[0113] Provided herein is a compound of Formula X-8:
or a salt thereof, wherein Bn is -CH2-C6H5. [0114] In some embodiments, the salt of compound X-8 is a di-para toluene sulfonic acid salt. [0115] In some embodiments, the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 5.30 ±0.2, 10.58 ±0.2, and 15.02 ±088, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. In some embodiments, the XRPD of the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 further comprises diffraction peaks at 2θ values of 18.55 ±0.2, and 21.22 ±0.2. [0116] In some embodiments, the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a powder X-ray diffraction pattern substantially as shown in Figure 5A. In some embodiments, the crystalline form of the di-para toluene sulfonic acid salt of compound X-8 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 5B. [0117] Table 5 shows observed XRPD 2θ peak positions and d-spacings for a crystalline form of a di- para toluene sulfonic acid salt of compound X-8 (compound X-8 • 2.5 pTSA).
2 θ d(Å) Height % Area Area % 2.67 31.61 0.2 1.7 0.2
[0118] Provided herein is a crystalline form of compound X-11: .
- or a salt thereof, wherein Bn is -CH2-C6H5;
±0.2, 9.52 ±0.2, 14.53 ±0.2, and 16.33 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. [0119] In some embodiments, the XRPD of the crystalline form of compound X-11 further comprises diffraction peaks at 2θ values of 17.92 ±0.2, and 18.37 ±0.2. [0120] In some embodiments, the crystalline form of compound X-11 is characterized by a powder X- ray diffraction pattern substantially as shown in Figure 6A. [0121] In some embodiments, the crystalline form of compound X-11 is characterized by a thermogravimetric analysis trace substantially as shown in Figure 6B. Synthesis of the Compounds [0122] The compounds may be prepared using the methods disclosed herein and routine modifications. Typical embodiments of the processes described herein are shown in the general reaction schemes described below. It will be apparent given the description herein that the general schemes may be altered by substitution of the starting materials and/or other reagents known to one of skill in the art. Starting materials are typically obtained from commercial sources or synthesized using published methods. In general, compounds described herein are typically stable and isolatable at room temperature and pressure. If available, reagents may be purchased commercially, e.g., from Sigma Aldrich or other chemical suppliers. Scheme 1
[0123] Referring to Scheme 1, compound X-10 (wherein, in Scheme 1, R is H) is prepared using published literature procedures as described in, e.g., Tetrahedron, Vol.52, No.15, pp.5363-5370, 1996.
[0124] Referring to Scheme 2, compound X-10 is prepared using published protocols. Cyclization of compound X-10 to compound X-11 is achieved in the presence of a base (e.g., DIPEA). Other suitable
of crystalline X-11, as described in Example 1. In some embodiments, the reaction is conducted in methanol. Other suitable solvents and anti-solvents are contemplated within the scope of this disclosure. The reaction is conducted at temperatures ranging from about room temperature to about reflux temperature of the solvent. In some embodiments, the reaction is conducted at temperatures ranging from about 60 °C to about 80 °C. In some embodiments, the pH of the reaction mixture is adjusted to about 10 by use of, e.g., ammonium hydroxide, and a mixture of water and acetone is used as an anti-solvent during the work up of the reaction, thereby inducing crystal formation and/or purification of the product X-11. [0125] Esterification of compound X-11 is achieved in the presence of an acid and a solvent such as dichloromethane, chloroform or other suitable solvents. It was found that the use of pTSA allows for superior yields and addition of iPrOAc as an antisolvent allows for filtration of the product X-8 as shown in Example 2. The reaction is conducted in the presence of an excess of pTSA and at a temperature ranging from about room temperature to about the reflux temperature of the solvent. [0126] The reductive amination step where Compound X-8 is converted to compound X-6 is conducted in the presence of a hydride source (e.g., a borohydride such as STAB) and an acid (e.g., trifluoroacetic acid) as shown in Example 3. Other suitable hydride sources may be used such as sodium hydride, sodium borohydride, or lithium aluminum hydride. It is believed that the acid such as TFA acts as an acid to facilitate imine formation, and also as a cosolvent to help all reactants stay in solution. The reaction is conducted at a temperature ranging from about room temperature to about 40 °C. In some embodiments, the reaction is conducted at about 20 °C or at about room temperature. The reaction is stirred for a period ranging from about 2 hours to about 24 hours. It was found that the stirring the reaction for a longer duration reduces the occurrence of compound Z-7: -7.
[0127] The conversion of compound X-6 to compound X-5 by reaction with compound X-7 is achieved in the presence of a base such as triethylamine. Other suitable bases such as methylamine, ethylene diamine, or diisorpropyl ethyl amine may be used. Any solvent including and not limited to DCM, ACN, or THF may be used. It was found that when a solution of X-5 was added to solution of X-7, as shown in
is stirred at a temperature ranging from about room temperature to about 40 °C. In some embodiments, the reaction is conducted at about 20 °C or at about room temperature. A water quench converts X-7 to its corresponding acid which can be extracted using aqueous base. A water quench also reduced occurrence of compound Z-10 when ethylene diamine was used as the base. It was found that a solvent swap to IPA allowed for crystallization of the product X-5. -10 [0128]
Cyc zat on o compoun -5 to - can e con ucte n t e presence o y raz ne, or hydrazine hydrate, and a suitable solvent such as dioxane, THF, acetonitrile, and the like. It was found that an inert atmosphere reduced the occurrence of compounds Z-6 and Z-11. The reaction is stirred at a temperature ranging from about room temperature to about the reflux temperature of the solvent. In some embodiments, the reaction is stirred at a temperature ranging from about 50 °C to about 80 °C, or from about 60 °C to about 70 °C. Use of water as an antisolvent allowed for crystallization of compound X-2 as shown in Example 5. -11
[0129] Compound X-2 is converted to compound X-1 via a metal-mediated coupling reaction with compound X-3-a. Suitable palladium catalysts include bis(di-tert-butyl(4- dimethylaminophenyl)phosphine)dichloropalladium(II), tris(dibenzylideneacetone)dipalladium(0) (Pd2dba3), palladium (II) acetate (Pd(OAc)2), dichloro(1,1’-bis(diphenylphosphino)- ferrocene)dipalladium(II) (Pd(dppf)Cl2), dichloro bis(triphenylphosphine)-palladium(II) (Pd(PPh3)2Cl2), bis(di-tert-butyl(4-dimethylaminophenyl)phosphine)dichloropalladium (PdAm(Phos)2Cl2), and the like, where the common abbreviations are given in parentheses. Phosphine ligands useful in the reaction
bis(diphenylphosphino)-ferrocene (dppf), 1,1'-bis(di-tert-butylphosphino)ferrocene, tri(2-furyl)phosphine, 1,3-bis(diphenylphosphino)propane (dppp), 1,5-bis(diphenylphosphino)pentane (dpppe), tri-tert- butylphosphine (P(t-Bu)3), Bis(di-tert-butyl(4-dimethylaminophenyl)phosphine (AmPhos), and 9,9-dimethyl-4,5- bis(diphenylphosphino)xanthene (Xantphos). An additional catalyst may be used. The additional catalyst may be a diboron reagent. The additional catalyst may be tetrahydroxydiboron (Bis Boric Acid (BBA)), a diboronic ester or the product of the reaction of bis(pinacolato)diboron with potassium fluoride hydrofluoride. [0130] Typical bases for the coupling reaction include potassium fluoride, cesium carbonate, and cesium fluoride. Alternatively, sodium carbonate, potassium carbonate, sodium phosphate, potassium phosphate, sodium acetate, potassium tert-butoxide, 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), or 1,4- diazabicyclo[2.2.2]octane (DABCO) can be used for the base. The reaction is typically conducted in an inert diluent, such as tetrahydrofuran, N,N-dimethylformamide, N,N-dimethylacetamide, or N- methylpyrrolidone. Suitable mixed solvent systems include tetrahydrofuran and water, tetrahydrofuran and N,N-dimethylformamide, tetrahydrofuran and N-methylpyrrolidone, acetone and water, ethanol and water, and isopropanol and water. The reaction is conducted at reflux temperatures or lower. The reaction is conducted at temperatures ranging from about 50 °C to about 100 °C. It was found that reaction temperatures of about 85 °C to about 95 °C, or about 88 °C to about 90 °C, reduced the occurrence of compounds Z-3 and Z-4. A solvent swap allowed for crystallization of compound X-1, as shown in Example 6. -4;
[0131] The hydrogenolysis of the benzyl ester in compound X-1 to obtain compound X-4 is achieved via a debenzylation reaction, as described in U.S. Publication No.2021/0269437. Other ester hydrolysis protocols such as acid-mediated or base-mediated hydrolysis may be used.
and any suitable solvent (e.g., DMF, DMA), may be used for the amide coupling, including the use of HATU as described in U.S. Publication No.2021/0269437. Suitable amide coupling reagents include and are not limited to dicyclohexylcarbodiimide (DCC), diisopropylcarbodiimide (DIC), ethyl-(N’,N’- dimethylamino)propylcarbodiimide hydrochloride (EDCI), 1-hydroxybenzotriazole (HOBt), (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP), (benzotriazol-1- yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyBOP), (7aAzabenzotriazol-1- yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyAOP), Bromotripyrrolidinophosphonium hexafluorophosphate (PyBrOP), bis(2-oxo-3-oxazolidinyl)phosphinic chloride (BOP-Cl), O-(7-azabenzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium hexafluorophosphate (HATU), O-(benzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium hexafluorophosphate (HBTU), O-(benzotriazol-1- yl)- N,N,N’,N’-tetramethyluronium tetrafluoroborate (TBTU), N,N,N’,N’-tetramethyluronium tetrafluoroborate (TATU), and O-(6-chlorobenzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium hexafluorophosphate (HCTU). [0133] Compound I is converted to Compound I hydrate according to the procedure described in U.S. Publication No.2021/0269437. EXAMPLES [0134] The X-ray powder diffraction data was obtained with a Bruker D8-Advance X-ray diffractometer using Cu-Kα radiation (λ = 1.5406 Å) with output voltage of 45 kV and current of 40 mA. The instrument was operated in Bragg-Brentano geometry with incident, divergence, and scattering slits set to maximize the intensity at the sample. For measurement, a small amount of powder (5-25 mg) was gently pressed onto a sample holder to form a smooth surface and subjected to X-ray exposure. The samples were scanned in 2θ-2θ mode from 2° to 35° in 2θ with a step size of 0.02° and a scan speed of 0.30°seconds per step. The data acquisition was controlled by Bruker DiffracSuite measurement software and analyzed by Jade software (version 7.7). The instrument was calibrated with a corundum standard, within ±0.02° two-theta angle. [0135] Thermogravimetric analysis (TGA) measurements were performed using a TA Instruments Model Q-50 module equipped with high resolution capability. Data were collected using TA Instruments Thermal Analyst controller and analyzed using TA Instruments Universal Analysis software. A weighed
temperature to 360 °C. The balance and furnace chambers were purged with nitrogen flow during use. [0136] The following examples are included to demonstrate specific embodiments of the disclosure. It should be appreciated by those of skill in the art that the techniques disclosed in the examples which follow represent techniques to function well in the practice of the disclosure, and thus can be considered to constitute specific modes for its practice. However, those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific embodiments which are disclosed and still obtain a like or similar result without departing from the spirit and scope of the disclosure. [0137] Reagents and solvents were purchased from commercial suppliers (Aldrich, Strem Chemicals, Inc., etc.), and used without further purification. Progress of reaction mixtures was monitored by analytical high performance liquid chromatography and mass spectrometry. Reaction mixtures were worked up as described specifically in each reaction, for instance, purified by extraction and other purification methods, such as temperature- and solvent-dependent crystallization, and precipitation. Characterization of reaction products was routinely carried out by mass and 1H-NMR spectrometry. EXAMPLE 1 Preparation of (S)-3-benzyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridine-6- carboxylic acid (X-11)
[0138] Compound X-10 was prepared using an adaptation of a literature procedure described in Tetrahedron, Vol.52, No.15, pp.5363-5370, 1996. [0139] Compound X-10 (165 g, 673 mmol), paraformaldehyde (42.4 g, 1413 mmol), and MeOH (825 mL, 5V) were charged to a nitrogen-inert glass jacketed reactor (R1) equipped with overhead mixing and a condenser. DIPEA (357 mL, 0.22 V) was added to the agitated slurry. The slurry was warmed to 66 °C (internal), and stirred for 1.5 h at 66 °C, at which time all remaining solids had fully dissolved and HPLC
solution was cooled to 20 °C. [0140] In a separate reactor (R2) was added acetone (3920 mL, 23.76 V), H2O (40 mL, 0.24 V), and NH4OH (175 mL, 1.06 V). The temperature of the reactor was adjusted to 20 °C and seeds of X-11 were added. The seed crystals of X-11 were prepared by crystallizing X-11, which may be made according to methods described herein without seeding, from a mixture of 1.0 % v/v water and acetone containing 4 equivalents of ammonium hydroxide at 5 °C. The solution from the first reactor R1 was added to the second reactor R2 while maintaining a temperature of 20 °C in the second reactor. The first reactor R1 was rinsed with minimal MeOH (248 mL, 1.5V), and the contents transferred to the second reactor R2. The slurry in the second reactor R2 was cooled to 5 °C over 2 h and held for no less than 12 h. The slurry was filtered and rinsed with cold (5-10 °C) acetone (990 mL, 6V). The cake was blown dry under nitrogen for 3 h, then dried in vacuum (>27 in Hg) at 50 °C to afford 167.442 g of compound X-11 (97 % yield, 99.66% HPLC purity). EXAMPLE 2 Preparation of benzyl (S)-3-benzyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridine-6-carboxylate (X-8); pTSA salt
[0141] X-11 (160 g, 553 mmol), pTSA•H2O (337 g, 1771 mmol), and benzyl alcohol (573 mL, 5535 mmol) and CHCl3 (183 mL, 7.4V) were charged to a nitrogen-inert glass jacketed reactor equipped with overhead mixing and a dean-stark apparatus. The slurry was warmed to reflux (68-78 °C internal). Water was collected in the Dean-stark trap over the course of the reflux. Reflux was continued for 20 h, at which time HPLC %a/a indicated >99% conversion. The solution was cooled to about 45 °C to 50 °C and iPrOAc (2848 mL, 17.8V) was added over no less than about 1.5 h – 2 h at this temperature. The hazy solution was then cooled to 5 °C and held for no less than 3 h. The hazy solution became a slurry over the course of the cooling. The mixture was filtered and the reactor was rinsed with iPrOAc (854 mL, 5.34V). The filter cake was blown dry under nitrogen for 3 h, then dried under vacuum (>27 inHg) at 50 °C to afford X-8•2.5XpTSA (394 g, 92% yield, 96.94% HPLC purity).
Preparation of benzyl (S)-3-benzyl-5-isopropyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridine-6- carboxylate (X-6)
[0142] X-8 •2.5XpTSA (100 g, 129 mmol), 3A Mol Sieves (75 g, 0.75X), and acetone (1500 mL, 15V) were charged to a nitrogen-inert glass jacketed reactor (R1) equipped with overhead mixing. To the slurry was added TFA (29.4 g, 257 mmol) and the mixture was stirred at 20 °C for 1.5 h. STAB (54.5 g, 257 mmol) was added in two portions over 15 minutes. Mild exotherm of +5 °C after the addition of each portion of STAB was observed. The internal temperature in the reactor was <25 °C. The reaction mixture was stirred at 20 °C for no less than 1 h, at which time HPLC indicated >99.5% conversion. The mixture was further stirred at 20 °C for no less than 23 h. [0143] 5% NaHCO3 aq soln (1250 mL, 12.5V) was added to the reactor. Some off-gassing, and mild exotherm was observed (+6 °C). The mixture was stirred for no less than 2 h at 20 °C. [0144] The reaction mixture was filtered to remove sieves, and the filtrate was collected in a separate glass vessel. A coarse prefilter followed by a fine filter was used to ensure a sufficient filtration rate. The reactor and the filter cake were rinsed with acetone (250 mL, 2.5V) [0145] The reactor was cleaned, and the clear yellow filtrate was returned to the vessel. Toluene was charged to the reactor (800 mL, 8V) and the mixture was stirred for 10 minutes and settled for 10 minutes, resulting in a clean phase biphasic split (clear yellow top organic, bottom clear aqueous). The aqueous phase was drained and collected in a second reactor (R2) equipped with a mechanical agitator. iPAc (600 mL, 6V) was added, and the mixture was stirred for 10 minutes and settled for 10 minutes, resulting in a clean phase split (clear yellow top organic, bottom clear aqueous). The bottom aqueous phase was drained and discarded. The top organic phase was combined with the top organic phase in the first reactor (R1). R2 was cleaned and used in the following step.
biphasic mixture was stirred for no less than 30 min and settled for no less than 1 h. The bottom aqueous phase was drained. The organic layer was concentrated to 300 mL/3V by vacuum distillation and transferred to a clean reactor (R2) through a filter to remove precipitated inorganic solids. The first reactor was charged with toluene (100 mL, 1V), followed by heptane (100 mL, 1V). This solution was used to rinse forward through the filter into the clean reactor (R2). [0147] The temperature of the reactor (R2) was adjusted to 20 °C and heptane (2500 mL, 25V) was added over no less than 1.5 h. The clear solution became hazy after ~400 mL/4V heptane added, and seeds (1 g, 0.01X) were charged to R2. The seed crystals of X-6 were prepared by crystallizing X-6, which may be made according to methods described herein without seeding, from a mixture of toluene and heptane at 20 °C. Heptane addition was continued after seed charge, generating a free-flowing white slurry. After heptane addition, the slurry was cooled to -5 °C internal temperature and held for no less than 12 h. The slurry was filtered and rinsed forward from R2 with heptane (600 mL, 6V). The filter cake was blown dry under nitrogen for 3 h before drying under vacuum (>27 inHg) at 50 °C to afford X-6 (44 g, 88% yield, 98.41% HPLC purity). EXAMPLE 4 Preparation of benzyl (S)-3-benzyl-2-(4-bromo-2-fluorobenzoyl)-5-isopropyl-4,5,6,7-tetrahydro- 3H-imidazo[4,5-c]pyridine-6-carboxylate (X-5) O O O N Bn
[0148] X-6 (100 g, 257 mmol) and DCM (400 mL, 4V) were charged to a nitrogen-inert glass jacketed reactor (R1) equipped with overhead mixing and the temperature was adjusted to 20 °C. TEA (143 mL, 1.43V) was charged to R1. X-7 (91 g, 385 mmol) and DCM (500 mL, 5V) were charged to a nitrogen- flushed glass jacketed reactor (R2) equipped with overhead mixing and the temperature was adjusted to 20 °C.
of R2 at 20-25 °C (mild exotherm). R2 was rinsed forward to R1 with DCM (100 mL, 1V) through the same transfer line. The contents of R2 were stirred at 20 °C for no less than 1.5 h, whereupon HPLC indicated >99.5% conversion to product. Water (700 mL, 7.0V) was charged to R1, controlling the internal temperature at 20-25 °C. The biphasic mixture was stirred rapidly for no less than 3h, till HPLC %a/a indicated conversion of X-7 to the corresponding carboxylic acid. [0150] Agitation of the mixture was halted and phases were allowed to separate out and settle for no less than 15 minutes. The bottom organic phase was collected in a separate vessel (V1). DCM (300 mL, 3V) was charged to V1. The mixture was agitated for no less than 15 min and settled for no less than 30 min to allow phases to separate. The bottom organic phase was collected and combined with the original organic phase. The aqueous phase was drained, and the combined organics returned to V1. [0151] The contents of V1 were distilled under vacuum (-21 inHg, 45 °C jacket) to a target volume of 3V (300 mL). After the target volume was achieved, V1 was backfilled with nitrogen and IPA (1700 mL, 17V) was charged to V1. The contents of V1 were distilled under vacuum (-27.5 inHg, 55 °C jacket) to a target volume of 12.5 V (1250 mL). After the target volume was achieved, V1 was backfilled with nitrogen and the temperature of the contents was adjusted to 45 °C. [0152] Seeds (0.005X, 0.5 g) were charged and the mixture agitated at 45 °C for no less than 1 h, by which time a thick slurry had formed. The seed crystals of X-5 were prepared by crystallizing X-5 (made according to methods described herein) from a mixture of isopropyl alcohol and water at 5 °C. The slurry was cooled to 20 °C over no less than 45 min. Water (550 mL, 5.5V) was added to the slurry over no less than 2 h while maintaining the internal temperature at 20-25 °C. The slurry was cooled to 5 °C over no less than 1 h, and then held at 5 °C for no less than 12 h. The slurry was transferred to a filter, and the wet cake collected. R1 was washed forward to rinse the cake with a premixed solution of IPA (700 mL, 7V) and H2O (300 mL, 3V), which was precooled to 5 °C. The light yellow/tan colored cake was blown dry under nitrogen for 3 h before drying under vacuum (<27 inHg) at 50 °C to afford X-5 (138.3 g, 91% yield, 98.85% HPLC purity).
Preparation of benzyl (S)-3-benzyl-2-(6-bromo-1H-indazol-3-yl)-5-isopropyl-4,5,6,7-tetrahydro- 3H-imidazo[4,5-c]pyridine-6-carboxylate (X-2) [0153] X-
( g, mmo) an oxane ( m , ) were c arge to a n trogen- nert glass jacketed reactor (R1) equipped with overhead mixing and the temperature was adjusted to 20 °C. The contents of R1 were degassed 6X by vacuum/nitrogen backfill. Hydrazine•H2O (55.5 mL, 0.41V) was added to R1, the internal temperature was adjusted to 65 °C, and the reaction was held at this temperature for 8.5 h at which time HPLC %a/a indicated >99.5% consumption of the starting material. [0154] The reaction mixture was cooled to 35-45 °C, and dioxane (8V, 1080 mL) was charged to R1. The solvent was distilled under vacuum (-29 inHg, internal temp <40 °C) until the target volume of ~5.5V was achieved (8V distillate removed). The temperature of the reaction mixture was adjusted to 45 °C, and EtOH (1080 mL, 8V) was added to R1. The temperature of the mixture was adjusted to 70 °C [0155] H2O (945 mL, 7V) was charged over no less than 30 min. Then seeds (0.675 g, 0.005X) were added and the solution was stirred for no less than 30 minutes while a thin seed bed formed. The seed crystals of X-2 were prepared by crystallizing X-2 (made according to methods described herein) from ethanol at 5 °C. The slurry was cooled to 5 °C over no less than 6 h, and held at 5 °C for no less than 2.5 h. The slurry was filtered and rinsed forward from R1 with a premixed solution of EtOH (486 mL, 3.6V) and H2O (324 mL, 2.4V), precooled to 5 °C. The filter cake was blown dry under nitrogen for 3 h before drying under vacuum (<27 inHg) at 60 °C to afford X-2 (124.752 g, 93% yield, 98.7% HPLC purity).
Preparation of benzyl (S)-3-benzyl-2-(6-(4-(benzyloxy)-2-ethylphenyl)-1H-indazol-3-yl)-5- isopropyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridine-6-carboxylate (X-1); dihydrochloride salt [015
6] X-2 (50.0 g, 86 mmol), X-3-a (43.4 g, 128 mmol), Bis-boric acid (BBA) (11.5 g, 128 mmol), and Pd(AmPhos)2Cl2 (3.03 g, 4.28 mmol) were added to a nitrogen-flushed glass reactor equipped with overhead mixing (R1). Dioxane (300 mL, 6V) was charged to a separate nitrogen-flushed glass reactor equipped with overhead mixing (R2) equipped with overhead mixing. The dioxane was degassed by vacuum (<50 torr) and nitrogen backfill cycles (3X). The degassed dioxane was transferred from R2 into R1 by nitrogen pressure transfer. [0157] K2CO3 (23.64g, 171 mmol) and H2O (165 mL, 3.3V) were charged to R2 and mixed until homogenous. The homogenous solution was degassed by vacuum (<50 torr) and nitrogen backfill cycles (3X). The degassed base solution was transferred from R2 into R1 by nitrogen pressure transfer, forming a yellow biphasic slurry in R1. [0158] R1 was degassed by vacuum (<50 torr) and nitrogen backfill cycles (3X). The internal temperature of R1 was adjusted to 88 °C, forming a red-orange biphasic slurry, and the mixture was held at 88 °C (reflux) for no less than 20 h, at which time HPLC %a/a indicated >99% conversion of the starting material to product. [0159] The reaction mixture was cooled to 45 °C and R1 was charged with iPAc (150 mL, 3V), followed by H2O (200 mL, 4V), forming a biphasic mixture (red/orange top organic phase, bottom clear aq phase). The mixture was stirred for 10 minutes and settled for 20 minutes. The bottom aqueous phase was drained and transferred to R2.
minutes. The bottom aqueous phase was drained and discarded. The top organic phase was transferred from R2 to R1. H2O (200 mL, 4V) was charged to R1 forming a biphasic mixture (red/orange top organic phase, bottom clear aq phase). The mixture was stirred for 10 minutes and settled for 20 minutes. The bottom aqueous phase was drained and discarded. The combined organics in R1 were concentrated to 150 mL, 3V by vacuum distillation (jacket 50 °C, -27 to -30 mmHg). [0161] IPAc (Isopropyl Acetate) (500 mL, 10 V) was charged to R1. The mixture was concentrated to 150 mL, 3V by vacuum distillation (jacket 50 °C, -27 to -30 mmHg). Solvent swap was conducted, i.e., IPA (250 mL, 5V) was charged to obtain a solution, and the solution temperature warmed to 80 °C. HCl/dioxane (66.3 mL, 1.33V) was then added to R1 over 10 minutes. The homogenous solution turned from dark orange to yellow throughout the addition. IPAc (900 mL, 18V) was added to R1 dropwise over 2 h while maintaining an internal temperature of 80 C. After ~400 mL/4V of the IPAc was added, seeds (0.5 g, 0.01X) were added and a slurry began to form. The seed crystals of X-1 were prepared by crystallizing X-1 (made according to methods described herein) from a mixture of isopropyl alcohol, HCl/dioxane and isopropyl acetate at 10 °C. The slurry was held at 80 °C for 4 h after the complete addition of iPAc, then cooled to 20 °C internal temperature over 5 h and held at this temperature for no less than 20 h. [0162] The slurry was filtered and rinsed forward from R1 with a premixed solution of IPA (125 mL, 2.5V) and iPAc (375 mL, 7.5V). The filter cake was blown dry under nitrogen for 3 h before drying under vacuum (<27 inHg) at 45 °C to afford X-1 •2HCl (62.58 g, 93% yield, 97.22% HPLC purity). EXAMPLE 7 Preparation of (S)-2-(6-(2-ethyl-4-hydroxyphenyl)-1H-indazol-3-yl)-5-isopropyl-4,5,6,7- tetrahydro-3H-imidazo[4,5-c]pyridine-6-carboxylic acid (X-4); dihydrochloride salt
according to the procedure described in U.S. Publication No.2021/0269437. EXAMPLE 8 Preparation of (S)-(3-(dimethylamino)azetidin-1-yl)(2-(6-(2-ethyl-4-hydroxyphenyl)-1H-indazol- 3-yl)-5-isopropyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridin-6-yl)methanone (Compound I) [01
] ompoun - y roc or e sa was conver e o ompoun accor ng o e proce ure described in U.S. Publication No.2021/0269437. EXAMPLE 9 Preparation of (S)-(3-(dimethylamino)azetidin-1-yl)(2-(6-(2-ethyl-4-hydroxyphenyl)-1H-indazol- 3-yl)-5-isopropyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridin-6-yl)methanone (Compound I); hydrate
[0165] Compound I was converted to a hydrate according to the procedure described in U.S. Publication No.2021/0269437. * * * [0166] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs.
element or elements, limitation or limitations, not specifically disclosed herein. Thus, for example, the terms “comprising”, “including,” “containing”, etc. shall be read expansively and without limitation. Additionally, the terms and expressions employed herein have been used as terms of description and not of limitation, and there is no intention in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. [0168] Thus, it should be understood that although the present invention has been specifically disclosed by preferred embodiments and optional features, modification, improvement and variation of the inventions embodied therein herein disclosed may be resorted to by those skilled in the art, and that such modifications, improvements and variations are considered to be within the scope of this invention. The materials, methods, and examples provided here are representative of preferred embodiments, are exemplary, and are not intended as limitations on the scope of the invention. [0169] All publications, patent applications, patents, and other references mentioned herein are expressly incorporated by reference in their entirety, to the same extent as if each were incorporated by reference individually. In case of conflict, the present specification, including definitions, will control. [0170] It is to be understood that while the disclosure has been described in conjunction with the above embodiments, that the foregoing description and examples are intended to illustrate and not limit the scope of the disclosure. Other aspects, advantages and modifications within the scope of the disclosure will be apparent to those skilled in the art to which the disclosure pertains.
Claims
1. A process for preparing a compound of Formula X-1:
or a salt thereof, wherein Bn is -CH2-C6H5; comprising: (a) reacting a compound of Formula X-2: or a salt thereof, with a compound
wherein R1 and R2 are each ind
kyl, or R1 and R2, together with the atoms to which they are attached, form a 5- or 6-membered ring optionally substituted with 1, 2, 3, or 4 C1-3 alkyl; to provide the compound of Formula X-1; and (b) optionally forming a salt of compound of Formula X-1. 2. The process of claim 1, wherein the salt of compound of Formula X-1 is a dihydrochloride salt.
of compound of Formula X-1 into isopropyl acetate (iPAc), conducting a solvent swap to obtain the free base form of compound of Formula X-1 in isopropyl alcohol (IPA), and adding an excess of HCl in dioxane. 4. The process of claim 1, wherein step (a) is conducted in the presence of a catalyst, wherein the catalyst in step (a) is Pd(AmPhos)2Cl2. 5. The process of claim 4, wherein the catalyst is present in an amount of about 3 to 5 mole percent, based on moles of compound of Formula X-1. 6. The process of claim 4 or 5, wherein step (a) is conducted in the presence of a base selected from K2CO3 or Cs2CO3. 7. The process of any one of claims 1 to 6, wherein compound of Formula X-1, or a salt thereof, is debenzylated to provide the compound of Formula X-4:
or a salt thereof. 8. The process of claim 7, wherein the debenzylation conditions comprise Pd/C, H2, and HCl. 9. The process of claim 7 or 8, wherein the salt of compound of Formula X-4 is a dihydrochloride salt or trihydrochloride salt. 10. The process of any one of claims 1 to 9, wherein the compound of Formula X-2, or a salt thereof, is prepared by reacting a compound of Formula X-5:
with hydrazine to provide the compound of Formula X-2. 11. The process of claim 10, wherein the hydrazine is hydrazine hydrate. 12. The process of claim 10 or 11, comprising a solvent, wherein the solvent is dioxane, and wherein the reaction is conducted in an inert atmosphere. 13. The process of any one of claims 10 to 12, wherein the compound of Formula X-5, or a salt thereof, is prepared by reacting a compound of Formula X-6:
or a salt thereof, with a compound of Formula X-7:
to provide the compound of Formula X-5. 14. The process of claim 13, wherein the reaction is quenched with water. 15. The process of any one of claims 13 to 14, wherein the compound of Formula X-6, or a salt thereof, is prepared by reacting a compound of Formula X-8:
or a salt thereof, with acetone in the pres
ence of an acid and a reducing agent to provide the compound of Formula X-6. 16. The process of claim 15, wherein the compound of Formula X-8 is a 2.5 p-toluene sulfonic acid (2.5xpTSA) salt of compound of Formula X-8. 17. The process of claim 15, wherein the reaction is conducted in the presence of trifluoroacetic acid (TFA) and sodium tricetoxyborohydride (STAB). 18. The process of any one of claims 15-17, wherein the reaction is stirred at room temperature. 19. A process for preparing a compound of Formula I: or a pharmaceutically acce
(a) reacting a compound of Formula X-8:
or a salt thereof, wherein Bn is -CH2-C6H5; with acetone in the presence of an acid and a reducing agent to provide a compound of Formula X-6:
or a salt thereof;
(b) reacting compound of Formula X-6, or a salt thereof, with a compound of Formula X-7:
to provide a compound of Formula X-5: or a salt thereof;
(c) reacting compound of Formula X-5, or a salt thereof, with hydrazine to provide a compound of Formula X-2: or a salt thereof,
(d) reacting compound of Formula X-2, or a salt thereof, with a compound of Formula X-3:
wherein R1 and R2 are each independently H or C1-5 alkyl, or R1 and R2, together with the atoms to which they are attached, form a 5- or 6-membered ring optionally substituted with 1, 2, 3, or 4 Ci -3 alkyl: to provide a compound of Formula X-l:
or a salt thereof;
(c) dcbcnzylating compound of Formula X-l, or a salt thereof, to provide a compound of Formula
X-4 or a salt thereof;
X-9 or a salt thereof, to provide the compound of Formula 1, or a pharmaceutically acceptable salt or solvate thereof:
20. The process of claim 19, further comprising recrystallizing compound of Formula I from methanol, and exposing compound of Formula I to ambient humidity, to provide compound I hydrate of formula:
.
21. A composition comprising Compound I: or a pharmaceutically acce
n 3% by weight of any of the following compounds: -4;
0 ;
22. Compound I prepared by a process according to any one of claims 19-20. 23. Compound I hydrate prepared by a process according to any one of claims 19-20. 24. A crystalline form of a dihydrochloride salt of compound X-1:
wherein Bn is -CH2-C6H5, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 10.70 ±0.2, 11.03 ±0.2, 13.39 ±0.2, and 16.08 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 25. The crystalline form of claim 24, further comprising diffraction peaks at 2θ values of 7.29 ±0.2, 9.64 ±0.2, 14.41 ±0.2, 17.20 ±0.2, and 18.18 ±0.2.
substantially as shown in Figure 1A. 27. The crystalline form of claim 24, characterized by a thermogravimetric analysis trace substantially as shown in Figure 1B. 28. A compound of Formula X-2: or a salt thereof, wherein Bn is -C
29. A crystalline form of a free base of the compound of claim 28, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 5.57 ±0.2, 12.68 ±0.2, 13.37 ±0.2, and 14.14 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 30. The crystalline form of claim 29, further comprising diffraction peaks at 2θ values of 7.38 ±0.2, 8.07 ±0.2, 9.81 ±0.2, 10.15 ±0.2, and 12.31 ±0.2. 31. A crystalline form of a free base of the compound of claim 28, characterized by a powder X-ray diffraction pattern substantially as shown in Figure 2A. 32. A compound of Formula X-5: or a salt thereof, wherein Bn is -CH2
6 5.
diffraction pattern comprising diffraction peaks at 2θ values of 10.95 ±0.2, 18.92 ±0.2, and 20.20 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 34. The crystalline form of claim 33, further comprising diffraction peaks at 2θ values of 9.29 ±0.2, and 16.45 ±0.2. 35. A crystalline form of a free base of the compound of claim 32, characterized by a powder X-ray diffraction pattern substantially as shown in Figure 3A. 36. A compound of Formula X-6: or a salt thereof, wherein Bn is -CH2-C6
37. A crystalline form of a free base of the compound of claim 36, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 7.50 ±0.2, 13.45 ±0.2, and 15.00 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 38. The crystalline form of claim 37, further comprising diffraction peaks at 2θ values of 6.73 ±0.2, 10.44 ±0.2, and 20.01 ±0.2. 39. A crystalline form of a free base of the compound of claim 36, characterized by a powder X-ray diffraction pattern substantially as shown in Figure 4A. 40. A compound of Formula X-8:
41. The compound of claim 40, wherein the salt is a di-para toluene sulfonic acid salt. 42. A crystalline form of the di-para toluene sulfonic acid salt of claim 41, characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 5.30 ±0.2, 10.58 ±0.2, and 15.02 ±088, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 43. The crystalline form of claim 42, further comprising diffraction peaks at 2θ values of 18.55 ±0.2, and 21.22 ±0.2. 44. A crystalline form of the di-para toluene sulfonic acid salt of the compound of claim 41, characterized by a powder X-ray diffraction pattern substantially as shown in Figure 5A. 45. A crystalline form of compound X-11: .
or a salt thereof, wherein Bn is -CH2-C6H5; characterized by a powder X-ray diffraction pattern comprising diffraction peaks at 2θ values of 6.06 ±0.2, 9.52 ±0.2, 14.53 ±0.2, and 16.33 ±0.2, as determined on a diffractometer using Cu-Ka radiation at a wavelength of 1.5406 Å. 46. The crystalline form of claim 45, further comprising diffraction peaks at 2θ values of 17.92 ±0.2, and 18.37 ±0.2. 47. The crystalline form of claim 45, characterized by a powder X-ray diffraction pattern substantially as shown in Figure 6A.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US202263346108P | 2022-05-26 | 2022-05-26 | |
US63/346,108 | 2022-05-26 |
Publications (1)
Publication Number | Publication Date |
---|---|
WO2023230236A1 true WO2023230236A1 (en) | 2023-11-30 |
Family
ID=86896167
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2023/023539 WO2023230236A1 (en) | 2022-05-26 | 2023-05-25 | Process for preparing jak inhibitors and intermediates thereof |
Country Status (1)
Country | Link |
---|---|
WO (1) | WO2023230236A1 (en) |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20200071324A1 (en) * | 2018-09-04 | 2020-03-05 | Theravance Biopharma R&D Ip, Llc | Process for preparing jak inhibitors and intermediates thereof |
US10947229B2 (en) | 2018-09-04 | 2021-03-16 | Theravance Biopharma R&D Ip, Llc | Dimethyl amino azetidine amides as JAK inhibitors |
US20210269437A1 (en) | 2020-03-02 | 2021-09-02 | Theravance Biopharma R&D Ip, Llc | Crystalline hydrate of a jak inhibitor compound |
WO2022178215A1 (en) * | 2021-02-19 | 2022-08-25 | Theravance Biopharma R&D Ip, Llc | Amino amide tetrahydro imidazo pyridines as jak inhibitors |
-
2023
- 2023-05-25 WO PCT/US2023/023539 patent/WO2023230236A1/en unknown
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20200071324A1 (en) * | 2018-09-04 | 2020-03-05 | Theravance Biopharma R&D Ip, Llc | Process for preparing jak inhibitors and intermediates thereof |
US10947229B2 (en) | 2018-09-04 | 2021-03-16 | Theravance Biopharma R&D Ip, Llc | Dimethyl amino azetidine amides as JAK inhibitors |
US20210269437A1 (en) | 2020-03-02 | 2021-09-02 | Theravance Biopharma R&D Ip, Llc | Crystalline hydrate of a jak inhibitor compound |
WO2021178991A1 (en) * | 2020-03-02 | 2021-09-10 | Theravance Biopharma R&D Ip, Llc | Crystalline hydrate of a jak inhibitor compound |
WO2022178215A1 (en) * | 2021-02-19 | 2022-08-25 | Theravance Biopharma R&D Ip, Llc | Amino amide tetrahydro imidazo pyridines as jak inhibitors |
Non-Patent Citations (4)
Title |
---|
BRAÑA MIGUEL F. ET AL: "Synthesis of 4,7,8a,9-tetrahydro-3 H -diimidazo-[1,5- a :4',5'- d ]pyridine derivatives", JOURNAL OF HETEROCYCLIC CHEMISTRY, vol. 39, no. 2, 1 March 2002 (2002-03-01), US, pages 417 - 420, XP093066520, ISSN: 0022-152X, DOI: 10.1002/jhet.5570390228 * |
FOSTER: "Deuterium Isotope Effects in Studies of Drug Metabolism", TRENDS PHARMACOL. SCI., vol. 5, no. 12, 1984, pages 524 - 527, XP025943358, DOI: 10.1016/0165-6147(84)90534-0 |
KLUTCHKO S ET AL: "4,5,6,7-Tetrahydro-1H-imidazo[4,5-c]pyridine-6-carboxylic acids (spinacines)", JOURNAL OF HETEROCYCLIC CHEMISTRY, WILEY-BLACKWELL PUBLISHING, INC, US, vol. 28, no. 1, 1 January 1991 (1991-01-01), pages 97 - 108, XP002734448, ISSN: 0022-152X, [retrieved on 20090311], DOI: 10.1002/JHET.5570280118 * |
TETRAHEDRON, vol. 52, no. 15, 1996, pages 5363 - 5370 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US11661424B2 (en) | Process for preparing BTK inhibitors | |
KR20150126881A (en) | Benzoimidazol-2-yl pyrimidine modulators of the histamine h4 receptor | |
CN116969937A (en) | BCL-2 inhibitors | |
EP2349276A2 (en) | Hiv integrase inhibitors | |
HUE024989T2 (en) | Derivatives of azaindoles as inhibitors of protein kinases abl and src | |
CN116546985A (en) | Pyridopyrimidine derivative and preparation method and application thereof | |
JP6985367B2 (en) | New compounds and methods | |
EA038078B1 (en) | Intermediates useful for the synthesis of a selective inhibitor against protein kinase and processes for preparing the same | |
WO2023230236A1 (en) | Process for preparing jak inhibitors and intermediates thereof | |
JP2008518883A (en) | 6- (2-Alkyl-phenyl) -pyrido [2,3-D] pyrimidines useful as protein kinase inhibitors | |
CN111943959A (en) | Synthetic method of JAK inhibitor | |
Wang et al. | Efficient synthesis of aza-phenanthroindolizidine and aza-phenanthroquinolizidine and anticancer activities | |
KR20240021198A (en) | Method for preparing ERK inhibitors | |
CA2559196A1 (en) | Novel dichloro-phenyl-pyrido [2,3-d] pyrimidine derivates, their manufacture and use as pharmaceutical agents | |
JP2022544583A (en) | Method for the preparation of pyrimidino-diazepine derivatives | |
KR20220131963A (en) | Method for producing purine derivatives exhibiting CDK inhibitory activity | |
CN117659005A (en) | Pyrazolopyridine derivative and application thereof | |
CN117881676A (en) | Methods for preparing ERK inhibitors | |
JP2641879B2 (en) | Preparation of optically active hydantoin derivatives | |
AU2019331459A1 (en) | Process for manufacturing pibrentasvir active drug substance | |
CA2716202A1 (en) | Pyrrolo[2,3-d]pyrimidin-2-yl-amine derivatives as pkc-theta inhibitors |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 23732767 Country of ref document: EP Kind code of ref document: A1 |