WO2015148860A1 - Crispr/cas-related methods and compositions for treating beta-thalassemia - Google Patents

Crispr/cas-related methods and compositions for treating beta-thalassemia Download PDF

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WO2015148860A1
WO2015148860A1 PCT/US2015/022851 US2015022851W WO2015148860A1 WO 2015148860 A1 WO2015148860 A1 WO 2015148860A1 US 2015022851 W US2015022851 W US 2015022851W WO 2015148860 A1 WO2015148860 A1 WO 2015148860A1
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nucleotides
domain
nucleic acid
molecule
targeting domain
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Ari E. FRIEDLAND
Morgan L. MAEDER
G. Grant Welstead
David A. Bumcrot
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Editas Medicine, Inc.
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
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    • C12N2310/00Structure or type of the nucleic acid
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    • C12N2310/20Type of nucleic acid involving clustered regularly interspaced short palindromic repeats [CRISPRs]
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    • C12N2799/025Uses of viruses as vector for the expression of a heterologous nucleic acid where the vector is derived from a parvovirus

Definitions

  • the invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Beta- Thalassemia (BT).
  • BT Beta- Thalassemia
  • Beta- thalassemia is a disease that causes chronic anemia. Beta- thalassemia major (BTM), a more severe form of the disease, is life threatening unless treated with lifelong blood transfusions and iron chelation therapy. Beta- Thalassemia intermedia does not require blood transfusions. However, it may cause growth delay, significant systemic abnormalities and frequently requires lifelong iron chelation therapy.
  • Beta-thalassemia is caused by mutations in the beta-globin (HBB) gene.
  • HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, and G gamma chain.
  • the alpha globin gene is located on chromosome 16.
  • Normal adult hemoglobin (Hb) is composed of a tetramer made from two alpha globin chains and two beta globin chains.
  • beta-thalassemia an imbalance of alpha globin and beta globin chains causes anemia.
  • the mutated beta globin chains result in an excess of alpha globin chains that precipitate in erythroid precursors in the bone marrow.
  • beta-thalassemia In beta-thalassemia major, both alleles of the beta-globin gene contain a mutation that leads to complete absence of beta globin production (denoted ⁇ / ⁇ ). The absence of beta globin chains leads to significant precipitation of alpha globin chains in erythroid cells and severe anemia. Beta-thalassemia major results from nonsense, frameshift or splicing mutations in beta- globin (HBB).
  • Beta-thalassemia intermedia is due to reduced production of beta globin chains and/or production of mutant beta globin chains.
  • Subject genotypes are denoted ⁇ / ⁇ + or ⁇ +/ ⁇ +.
  • represents non-expressing beta globin alleles;
  • ⁇ + represents beta globin alleles with reduced expression.
  • Phenotypic expression varies among subjects. As there is some production of beta globin, there is less precipitation of alpha globin chains in the erythroid precursors and less severe anemia than in beta-thalassemia major. However, in beta-thalassemia intermedia there are more significant consequences of erythroid lineage expansion secondary to chronic anemia. Beta-thalassemia intermedia results from mutations in the 5' or 3' untranslated region of HBB, mutations in the promoter region or polyadenylation signal, or from splicing mutations.
  • Beta-thalassemia affects approximately 1 in 100,000 people worldwide. Its prevalence is higher in certain populations, including those of European descent, where its prevalence is higher.
  • Subjects with beta-thalassemia major present between the ages of 6 months and 2 years. Subjects suffer from failure to thrive, fevers, hep ato splenomegaly and diarrhea. Adequate treatment includes regular transfusions. Therapy for beta-thalassemia major also includes splenectomy and treatment with hydroxyurea. If subjects are regularly transfused, they will develop normally until the beginning of the second decade. At that time, they require chelation therapy (in addition to continued transfusions) to prevent the complications of iron overload. Iron overload may manifest as growth delay or delay of sexual maturation.
  • Beta-thalassemia intermedia subjects have a variable phenotype. They generally present between the ages of 2-6 years. They do not generally require blood transfusions. However, bone abnormalities occur due to chronic hypertrophy of the erythroid lineage to compensate for chronic anemia. Subjects may have fractures of the long bones due to osteoporosis.
  • Extramedullary erythropoiesis is common and leads to enlargement of the spleen, liver and lymph nodes. It may also cause spinal cord compression and neurologic problems. Subjects also suffer from lower extremity ulcers and are at increased risk for thrombotic events, including stroke, pulmonary embolism and deep vein thrombosis.
  • Treatment of beta-thalassemia intermedia includes, e.g., splenectomy, folic acid supplementation, hydroxyurea therapy and radiotherapy for extramedullary masses. Chelation therapy is used in subjects who develop iron overload.
  • Beta-thalassemia subjects Life expectancy is often diminished in beta-thalassemia subjects. Subjects with beta- thalassemia major who do not receive adequate transfusion therapy generally die in their second or third decade. Subjects with beta-thalassemia major who receive regular transfusions and adequate chelation therapy can live into their 5th decade and beyond. Cardiac failure secondary to iron toxicity is the leading cause of death in beta-thalassemia major subjects due to iron toxicity.
  • Beta-Thalassemia Major BTM
  • beta-thalassemia a severe form of beta- thalassemia, which is characterized by absence of beta globin production.
  • HbA the predominant form of hemoglobin
  • HbF fetal hemoglobin
  • gamma globin substitutes for beta globin can significantly moderate the severe anemia of BT.
  • the expression of gamma globin is negatively regulated by the BCL11A gene product.
  • BCL11A B-cell CLL/lymphoma 11A
  • BCL11A gene is also known as B-cell CLL/lymphoma 11 A, BCL11A-L, BCL11A-S, BCL11A- XL, CTIP1, HBFQTL5 and ZNF.
  • BCL11A encodes a zinc-finger protein that is involved in the regulation of globin gene expression.
  • the levels of gamma globin can be increased.
  • Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating BT disease phenotypes.
  • methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent BT, by targeting the BCLllA gene, e.g., coding or non-coding regions of the BCLllA gene.
  • Altering the BCLllA gene herein refers to reducing or eliminating (1) BCLllA gene expression, (2) BCL11A protein function, or (3) the level of BCL11A protein.
  • the coding region e.g., an early coding region
  • a non-coding sequence e.g., an enhancer region, a promoter region, an intron, 5'UTR, 3'UTR, or polyadenylation signal
  • an enhancer region e.g., an enhancer region, a promoter region, an intron, 5'UTR, 3'UTR, or polyadenylation signal
  • the method provides an alteration that comprises disrupting the BCLllA gene by the insertion or deletion of one or more nucleotides mediated by a Cas9 molecule (e.g., an enzymatically active Cas9 (eaCas9) molecule, e.g., Cas9 nuclease or Cas9 nickase) as described below.
  • a Cas9 molecule e.g., an enzymatically active Cas9 (eaCas9) molecule, e.g., Cas9 nuclease or Cas9 nickase
  • This type of alteration is also referred to as "knocking out" the BCLllA gene.
  • a targeted knockout approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically active Cas9 (eaCas9) molecule.
  • a Cas9 molecule e.g., an enzymatically active Cas9 (eaCas9) molecule.
  • the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCLllA gene and is mediated by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein, as described below.
  • This type of alteration is also referred to as "knocking down" the BCLllA gene.
  • a targeted knockdown approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically inactive Cas9
  • the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent BT by knocking out one or both alleles of the BCLllA gene.
  • the coding region e.g., an early coding region
  • a non-coding region of the BCLllA gene e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal
  • an enhancer e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer
  • a tissue-specific enhancer e.g., a myeloid enhancer, e.g., an erythroid enhancer
  • BCLllA erythroid enhancer comprises an approximatel2.4 kb fragment of BCLllA intron 2, located between approximate +52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52kb to TSS+64.4kb, see Fig. 10). It is also referred to herein as chromosome 2 location 60,716,189-60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly). Three deoxyribonuclese I hypersensitive sites (DHSs), TSS+62kb, TSS+58kb and TSS+55kb are located in this region. Deoxyribonuclease I sensitivity is a marker for gene regulatory elements.
  • deleting the enhancer region may reduce or eliminate BCLllA expression in erythroid precursors which leads to gamma globin derepression while sparing BCLllA expression in nonerythoroid lineages.
  • the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1- hypersensitivie sites (DHS).
  • the method provides an alteration that comprises an insertion or deletion of one or more nucleotides.
  • a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9) molecule.
  • NHEJ non-homologous end joining
  • eaCas9 enzymatically active Cas9
  • a targeted knockout approach alters the BCLllA gene.
  • a targeted knockout approach reduces or eliminates expression of functional BCLllA gene product.
  • targeting affects one or both alleles of the BCLllA gene.
  • an enhancer disruption approach reduces or eliminates expression of functional BCLllA gene product in the erythroid lineage.
  • B target knockout position refers to a position in the BCLllA gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in alteration of the BCLllA gene.
  • the position is in the BCLllA coding region, e.g., an early coding region.
  • the position is in a BCLllA non-coding region, e.g., an enhancer region.
  • methods and compositions discussed herein provide for altering (e.g., knocking out) the BCLllA gene.
  • knocking out the BCLllA gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more
  • the BT target knockout position is altered by genome editing using the CRISPR/Cas9 system.
  • the BT target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ- mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BT target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCLllA gene.
  • a single nuclease or dual nickases e.g., to induce insertion or deletion (e.g., NHEJ- mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BT target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCLllA gene.
  • the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
  • a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule.
  • a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
  • a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene.
  • the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule.
  • the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • two double strand breaks are introduced to flank the erythroid enhancer of the BCLllA gene (one 5' and the other one 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer.
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two double strand breaks
  • the breaks, i.e., two double strand breaks can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks are introduced to flank the erythroid enhancer in the BCL11A gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer.
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the double strand break and the pair of single strand breaks
  • chromosome elements such as endogenous splice sites.
  • the breaks e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • two sets of breaks are introduced to flank the erythroid enhancer at the BT target position in the BCL11A gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer.
  • the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ.
  • the breaks i.e., the two pairs of single strand breaks
  • the breaks e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
  • the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent BT by knocking down one or both alleles of the BCL11A gene.
  • the coding region of the BCL11A gene is targeted to alter the gene.
  • a non-coding region e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal
  • the promoter region of the BCL11A gene is targeted to knock down the expression of the BCL11A gene.
  • a targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCL11A gene.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein) to alter transcription, e.g., to block, reduce, or decrease
  • an enzymatically inactive Cas9 eiCas9
  • an eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein
  • BT target knockdown position refers to a position, e.g., in the BCL11A gene, which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCL11A gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCL11A promoter sequence, In an embodiment, a position in the promoter sequence of the BCL11A gene is targeted by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein, as described herein.
  • eiCas9 enzymatically inactive Cas9
  • one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
  • eiCas9 enzymatically inactive Cas9
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • BT target position refers to any of a BT target knockout position, or BT target knockdown position.
  • gRNA molecule e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the BCL11A gene.
  • the two or more cleavage events may be made by the same or different Cas9 proteins.
  • a single Cas9 nuclease may be used to create both double strand breaks.
  • a single Cas9 nickase may be used to create the two or more single strand breaks.
  • two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that in an embodiment when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
  • the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule.
  • the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
  • the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered.
  • the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
  • the targeting domain is independently selected from those in Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F.
  • the targeting domain is independently selected from those in Tables 1A-1F.
  • the targeting domain is independently selected from:
  • GCUUUUUUCAUCUCGAU (SEQ ID NO: 394);
  • AGGUCAUGAUCCCCUUC (SEQ ID NO: 398).
  • each guide RNA is selected from one of Tables 1A-1F.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E.
  • the targeting domain is independently selected from those in Tables 3A-3E.
  • the targeting domain is independently selected from:
  • GATAAACAATCGTCATCCTC SEQ ID NO: 2577
  • GATGCCAACCTCCACGGGAT SEQ ID NO: 2578
  • GCATCCAATCCCGTGGAGGT (SEQ ID NO: 2580);
  • GGAGCTCTAATCCCCACGCC (SEQ ID NO: 2583).
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E. In an embodiment, the targeting domain is independently selected from those in Tables 4A-4E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5B. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5B.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 12A-12D. In an embodiment, the targeting domain is independently selected from those in Tables 12A-12D.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13E. In an embodiment, the targeting domain is independently selected from those in Tables 13A-13E.
  • a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14B. In an embodiment, the targeting domain is independently selected from those in Tables 14A-14B.
  • each guide RNA comprises a targeting domain that is selected from any one of Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6D, 7A-7D, 8, 18A-18E, 19A- 19E, or 20A-20C.
  • the targeting domain is independently selected from those in Tables 6A-6D, 7A-7D, 8, 18A-18E, 19A-19E, or 20A-20C.
  • a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6D.
  • the targeting domain is independently selected from those in Tables 6A-6D.
  • the targeting domain is independently selected from:
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D. In an embodiment, the targeting domain is independently selected from those in Tables 7A-7D.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 8. In an embodiment, the targeting domain is independently selected from those in Table 8.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18E. In an embodiment, the targeting domain is independently selected from those in Tables 18A-18E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is independently selected from those in Tables 19A-19E.
  • a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is independently selected from those in Tables 20A-20C.
  • each guide RNA comprises a targeting domain that is selected from any one of Tables 6A-6D, 7A-7D, 8, 18A- 18E, 19A-19E, or 20A-20C.
  • the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to the BCL11A transcription start site (TSS) to reduce (e.g., block) transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase.
  • eiCas9 enzymatically inactive Cas9
  • an eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • the targeting domain is configured to target between 1000 bp upstream and 1000 bp downstream (e.g., between 500 bp upstream and 1000 bp downstream, between 1000 bp upstream and 500 bp downstream, or between 500 bp upstream and 500 bp downstream) of the TSS of the BCL11A gene.
  • One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
  • the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2C, 9A-9D, 10A-10D, 11, 15A-15C, 16A-16E, or 17A-17C.
  • the targeting domain is independently selected from those in Tables 2A-2C, 9A- 9D, 10A-10D, 11, 15A-15C, 16A-16E, or 17A-17C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2C. In an embodiment, the targeting domain is independently selected from those in Tables 2A-2C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2,
  • a targeting domain sequence from any one of Tables 9A-9D is independently selected from those in Tables 9A-9D. In another embodiment, the targeting domain is independently selected from:
  • GACGACGGCTCGGTTCACAT SEQ ID NO: 4482
  • GCCTTGCTTGCGGCGAGACA (SEQ ID NO: 4484); GGCTCCGCGGACGCCAGACG (SEQ ID NO: 4485);
  • GCGGGCGGACGACGGCT SEQ ID NO: 4488.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10D. In an embodiment, the targeting domain is independently selected from those in Tables 10A-10D.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 11. In an embodiment, the targeting domain is independently selected from those in Table 11.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 15A-15C. In an embodiment, the targeting domain is independently selected from those in Tables 15A-15C.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 16A-16E. In an embodiment, the targeting domain is independently selected from those in Tables 16A-16E.
  • the targeting domain when the BCL11A promoter region is targeted, e.g., for knockdown, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 17A-17C. In an embodiment, the targeting domain is independently selected from those in Tables 17A-17C.
  • the BT target knockdown position is the BCL11A promoter region.
  • more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein) in the target nucleic acid sequence, each guide RNA comprises a targeting domain that is selected from any one of Tables 2A-2C, 9A-9D, 10A-10D, 11, 15A-15C, 16A-16E, 17A-17C.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence described herein, e.g., selected from any one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • the targeting domain is selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • the targeting domain which is complementary with a target domain in the BCLllA gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the gRNA e.g., a gRNA comprising a targeting domain, which is complementary with a target domain in the BCLllA gene (e.g., a target domain from a BT target position in the BCL11A gene), is a modular gRNA.
  • the gRNA is a unimolecular or chimeric gRNA.
  • a gRNA as described herein may comprise from 5' to 3': a targeting domain
  • proximal domain and tail domain are taken together as a single domain.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a cleavage event e.g., a double strand or single strand break
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kriippel- associated box
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N- terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • nucleic acid e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with a BT target position, in the BCL11A gene as disclosed herein.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCL11A gene.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7
  • the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31.
  • the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA.
  • the nucleic acid encodes a chimeric gRNA.
  • the nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides. In an embodiment, the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a gRNA comprising from 5' to 3' : a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first
  • proximal domain and tail domain are taken together as a single domain.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 molecule e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary.
  • a single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the said eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kriippel-associated box
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further maycomprise (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the BCL11A gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the BCLllA gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the BCLllA gene.
  • a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene, to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the
  • eiCas9 enzymatically inactive Cas9
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the
  • eiCas9 enzymatically inactive Cas9
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • the nucleic acid encodes a second gRNA molecule.
  • the second gRNA is selected to target the same BT target position as the first gRNA molecule.
  • the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule.
  • the third gRNA molecule and the fourth gRNA molecule are selected to target the same BT target position as the first and second gRNA molecules.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A- 15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • a targeting domain selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
  • the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31.
  • the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31.
  • the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA.
  • the nucleic acid encoding a second gRNA is a chimeric gRNA.
  • the third and fourth gRNA may be a modular gRNA or a chimeric gRNA.
  • a nucleic acid may encode a second, a third, and/or a fourth gRNA, each independently, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA, each independently, comprising from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • the proximal domain and tail domain are taken together as a single domain.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein.
  • (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
  • first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules may be AAV vectors.
  • a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein; andfurther comprises (c)(i) a sequence that encodes a second gRNA molecule as described herein and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the BCL11A gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the BCL11A gene.
  • the nucleic acid comprises (a), (b) and (c)(i). In an embodiment, the nucleic acid comprises (a), (b), (c)(i) and (c)(ii). In an embodiment, the nucleic acid comprises (a), (b), (c)(i), (c)(ii) and (c)(iii). Each of (a) and (c)(i) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
  • (a) and (c)(i) are on different vectors.
  • a first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • a second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules are AAV vectors.
  • each of (a), (b), and (c)(i) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • one of (a), (b), and (c)(i) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c)(i) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • (c)(i) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • each of (a), (b) and (c)(i) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector.
  • vectors e.g., different viral vectors, e.g., different AAV vector.
  • (a) may be on a first nucleic acid molecule
  • (c)(i) on a third nucleic acid molecule may be AAV vectors.
  • each of (a), (b), (c)(i), (c) (ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (c) (iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c) (ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • the nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein.
  • the nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein.
  • the promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
  • the nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
  • a composition comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCLllA gene, as described herein.
  • the composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein.
  • a composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein.
  • the composition is a pharmaceutical composition.
  • the compositions described herein, e.g., pharmaceutical compositions described herein, can be used in the treatment or prevention of BT in a subject, e.g., in accordance with a method disclosed herein.
  • a method of altering a cell e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the BCLllA gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets BCLllA gene, e.g., a gRNA, as described herein.
  • the method comprises contacting said cell with (a) and (b).
  • the method comprises contacting said cell with (a), (b), and (c).
  • the targeting domain of the gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, or a targeting domain of a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C,
  • the method comprises contacting a cell from a subject suffering from or likely to develop BT.
  • the cell may be from a subject that would benefit from having a mutation at a BT target position.
  • the cell being contacted in the disclosed method is an erythroid cell.
  • the contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step.
  • the contacting step may be performed in vivo.
  • the method of altering a cell as described herein comprises acquiring knowledge of the sequence of a BT target position in said cell, prior to the contacting step.
  • Acquiring knowledge of the sequence of a BT target position in the cell may be by sequencing the BCL11A gene, or a portion of the BCL11A gene.
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), and a nucleic acid which encodes a gRNA (a), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
  • contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
  • a nucleic acid e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes a gRNA of (a) and optionally a second, third and/or fourth gRNA of (c).
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a method of treating a subject suffering from or likely to develop BT e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
  • a gRNA that targets the BCLllA gene e.g., a gRNA disclosed herein;
  • a Cas9 molecule e.g., a Cas9 molecule disclosed herein;
  • a second gRNA that targets the BCLllA gene e.g., a second gRNA disclosed herein, and
  • contacting comprises contacting with (a) and (b).
  • contacting comprises contacting with (a), (b), and (c)(i).
  • contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
  • the targeting domain of the gRNA of (a) or (c) may be selected from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31, or a targeting domain of a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A- 4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C
  • the method comprises acquiring knowledge of the sequence at a BT target position in said subject.
  • the method comprises acquiring knowledge of the sequence at a BT target position in said subject by sequencing the BCLllA gene or a portion of the BCLllA gene.
  • the method comprises introducing a mutation at a BT target position.
  • the method comprises introducing a mutation at a BT target position by NHEJ.
  • a Cas9 of (b) and at least one guide RNA are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by intravenous delivery of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), and optionally
  • the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally said second gRNA of (c)(i), and further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA.
  • the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of
  • the method comprises (1) introducing a mutation at a BT target position by NHEJ or (2) knocking down expression of the BCL11A gene, e.g., by targeting the promoter region, a Cas9 of (b) and at least one guide RNA, e.g., a guide RNA of (a) are included in the contacting step.
  • a cell or a plurality of cells produced (e.g., altered) by a method described herein.
  • a reaction mixture comprising a gRNA molecule, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop BT, or a subject which would benefit from a mutation at a BT target position.
  • a kit comprising, (a) a gRNA molecule described herein, or a nucleic acid that encodes the gRNA, and one or more of the following:
  • a Cas9 molecule e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
  • a second gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
  • a third gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
  • a fourth gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii).
  • the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), and (c)(iii).
  • nucleic acid e.g., an AAV vector
  • the kit further comprises a governing gRNA molecule, or a nucleic acid that encodes a governing gRNA molecule.
  • the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject.
  • the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule.
  • the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule.
  • the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage.
  • the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA.
  • altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
  • the gRNA molecules and methods, as disclosed herein, can be used in combination with a governing gRNA molecule.
  • the compositions and reaction mixtures, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
  • a gRNA molecule e.g., a gRNA molecule described herein, for use in treating or preventing BT in a subject, e.g., in accordance with a method of treating or preventing BT as described herein.
  • the gRNA molecule is used in combination with a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionally or alternatively, in an embodiment, the gRNA molecule is used in combination with a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
  • a gRNA molecule e.g., a gRNA molecule described herein, in the manufacture of a medicament for treating or preventing BT in a subject, e.g., in accordance with a method of treating preventing BT as described herein.
  • the medicament comprises a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionaly or alternatively, in an embodiment, the medicament comprises a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
  • Headings including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
  • Figs. 1A-1I are representations of several exemplary gRNAs.
  • Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
  • Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
  • Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
  • Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
  • Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
  • Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
  • Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S.
  • thermophilus SEQ ID NOS: 50-53, respectively, in order of appearance.
  • Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules.
  • Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
  • Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
  • Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B".
  • the HNH-like domain is boxed and indicated by a "G”.
  • Sm S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4). Motif: this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance).
  • the last line of Fig. 3B identifies 4 highly conserved residues.
  • Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance).
  • SEQ ID NOS: 104-177 sequence outliers removed.
  • the last line of Fig. 4B identifies 3 highly conserved residues.
  • Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
  • Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance).
  • SEQ ID NOS: 253-302 sequence outliers removed.
  • the last line of Fig. 6B identifies 3 highly conserved residues.
  • Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (N. meningitidis).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B”.
  • the HNH-like domain is boxed and indicated with a "G”.
  • Sp S. pyogenes
  • Nm N. meningitidis.
  • Motif this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an "R” is an SV40 NLS; sequence indicated as “G” is an HA tag; and sequence indicated by an “O” is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF).
  • Figs. 9A and 9B are schematic representations of the domain organization of S. pyogenes
  • Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes).
  • Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
  • Fig. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCLl 1 A intron 2.
  • Three erythroid DHSs are labled as distance in kilobases from BCLl 1A TSS (+62, +58 and +55). BCLl 1A transcription is from right to left.
  • Fig. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCLl 1 A locus.
  • Figs. 12A-12B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCLl 1A-2983W and BCLl 1A-2981W.
  • Fig. 12A depicts schematic of DNA sequence recognized by BCLl 1 A-2983W and BCLl 1A-2981W, which flanks the putative erythroid enhancer elements.
  • Fig. 12B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • Figs. 13A-13B depict detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
  • Fig. 13A depicts schematic of DNA sequence recognized by BCLl 1 A-2995W and BCLl 1 A-2984W, which flanks the putative erythroid enhancer elements.
  • Fig. 13B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
  • Domain is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
  • Calculations of homology or sequence identity between two sequences are performed as follows.
  • the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes).
  • the optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5.
  • the amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared.
  • Governing gRNA molecule refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence.
  • a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the BCLllA gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b).
  • a nucleic acid molecule that encodes a CRISPR/Cas component comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component.
  • the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the BCLllA gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a CRISPR/Cas system component e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule.
  • the governing gRNA limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting.
  • a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex.
  • a governing gRNA reduces off-target or other unwanted activity.
  • a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
  • Modulator refers to an entity, e.g., a drug that can alter the activity
  • modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non- covalent bond, e.g., the attachment of a moiety, to the subject molecule.
  • a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule.
  • a modulator can increase, decrease, initiate, or eliminate a subject activity.
  • Large molecule refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
  • polypeptide refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
  • Non-homologous end joining refers to ligation mediated repair and/or non-template mediated repair including, e.g., canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
  • cNHEJ canonical NHEJ
  • altNHEJ alternative NHEJ
  • MMEJ microhomology-mediated end joining
  • SSA single-strand annealing
  • SD-MMEJ synthesis-dependent microhomology-mediated end joining
  • a reference molecule refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared.
  • a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule.
  • reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus .
  • the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared.
  • the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
  • Small molecule refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
  • Subject may mean either a human or non-human animal.
  • the term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats).
  • the subject is a human.
  • the subject is poultry.
  • Treatment mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
  • Prevent means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
  • X as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
  • BCL11A One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression.
  • BCL11A One such gene is BCL11A. It plays a role in the regulation of ⁇ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of ⁇ globin expression. BCLl 1 A is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in ⁇ globin expression. In addition, it appears that the splicing of the BCLl 1 A mRNA is developmentally regulated.
  • BCLl 1 A-S and BCLl 1A-XS are primary expressed, while in adult cells, the longer BCLl 1 A-L and BCLl 1A- XL mRNA variants are predominantly expressed.
  • the BCLl 1A protein appears to interact with the ⁇ globin locus to alter its conformation and thus its expression at different developmental stages.
  • BCLl 1 A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of ⁇ globin and HbF production.
  • Altering the BT target position is achieved, e.g., by:
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • deletion e.g., NHEJ-mediated deletion of genomic sequence including the erythroid enhancer of the BCLllA gene, or
  • methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCLllA gene.
  • methods described herein introduce two or more breaks to flank the erythroid enhancer of BT target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer.
  • methods described herein comprises knocking down the BCLllA gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of BT target knockdown position. All methods described herein result in alteration of the BCLllA gene. NHEJ-mediated introduction of an indel in close proximity to or within the early coding region of the BT knockout position
  • the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the BT target knockout position (e.g., the early coding region) of the BCL11A gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the BT target knockout position, such that the break-induced indel could be reasonably expected to span the BT target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the BT target knockout position.
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a BT target knockout position.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of a BT target knockout position in the BCL11A gene.
  • a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • the breaks e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a BT target knockout position in the BCL11A gene.
  • the breaks e.g., double strand or single strand breaks
  • the breaks are positioned on one side, e.g., upstream or downstream, of a nucleotide of a BT target knockout position in the BCLllA gene.
  • a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below.
  • the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCLllA gene.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCLllA gene in the BCLllA gene.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCLllA gene in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a BT target knockout position in the BCL11A gene the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150,
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two double strand breaks— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the first double strand break is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to
  • the second double strand break is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10).
  • the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two double strand breaks
  • the first double strand break may be positioned as follows:
  • the second double strand break to be paired with the first double strand break may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the first double strand break may be positioned in the BCL11A gene:
  • the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene.
  • the two sets of breaks either the double strand break or the pair of single strand breaks
  • the BT target knockdown position e.g., the erythroid enhancer
  • the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to
  • the two sets of breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
  • the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
  • the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCLllA gene:
  • the two sets of breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
  • the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer.
  • the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer).
  • Two gRNAs e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCLllA gene.
  • the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10).
  • the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs.
  • the breaks i.e., the two pairs of single strand breaks
  • the first pair of single strand breaks may be positioned as follows:
  • the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned as follows:
  • DHSs e.g., between TSS+52.0kb to TSS+64.4kb.
  • the pair of single strand breaks may be positioned in the BCLllA gene: (1) between TSS+0.75kb to TSS+lOkb,
  • the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
  • a targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • eiCas9 enzymatically inactive Cas9
  • Methods and compositions discussed herein may be used to alter the expression of the BCLllA gene to treat or prevent BT by targeting a promoter region of the BCLllA gene.
  • the promoter region e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCLllA gene.
  • the methods and compositions discussed herein may be used to knock down the BCLllA gene to treat or prevent BT by targeting 0.5 kb upstream or downstream of the TSS.
  • a targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • eiCas9 enzymatically inactive Cas9
  • chromatin modifying protein e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
  • BT including BTM and BT intermedia
  • the BCLllA gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
  • HbF fetal hemoglobin
  • Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues.
  • Subjects with beta-thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
  • knockout or knockdown of the BCLllA gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression.
  • BCL11 A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin.
  • Knockout of the BCLllA gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta- thalassemia (HbF will form tetramers with hemoglobin alpha).
  • the BCLllA knockout or knockdown is targeted specifically to cells of the erythroid lineage.
  • BCLllA knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function.
  • erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells.
  • erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
  • the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with BT.
  • subjects with beta thalassemia major will suffer from less severe anemia and will need fewer blood transfusions. They will therefore have fewer complications arising from transfusions and chelation therapy.
  • the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells.
  • subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy.
  • the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
  • Knockdown or knockout of one or both BCLllA alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
  • the method comprises initiating treatment of a subject prior to disease onset.
  • the method comprises initiating treatment of a subject after disease onset.
  • the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of BT, e.g., BTM. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
  • the method comprises initiating treatment of a subject in an advanced stage of disease.
  • the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
  • the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
  • the method comprises initiating treatment of a subject who is transfusion-dependent.
  • the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
  • the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
  • a cell is treated, e.g., ex vivo.
  • an ex vivo treated cell is returned to a subject.
  • allogenic or autologous bone marrow or erythroid cells are treated ex vivo.
  • an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject.
  • an erythroid cell e.g., an autologous erythroid cell
  • an autologous stem cell is treated ex vivo and returned to the subject.
  • the modified HSCs are administered to the patient following no myeloablative pre-conditioning.
  • the modified HSCs are administered to the patient following mild myeloablative preconditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs.
  • the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
  • the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
  • IBM intra-bone marrow
  • the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
  • a parvovirus e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells.
  • two or more gRNA molecules are delivered.
  • a gRNA molecule refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid.
  • gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules).
  • a gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
  • gRNA structures with domains indicated thereon, are provided in Fig. 1. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter- strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
  • a targeting domain (which is complementary to a target nucleic acid in the
  • BCLllA gene e.g., a targeting domain from any of Tables 1A-1F, 2A-2C, 3A- 3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31); a first complementarity domain;
  • a tail domain optionally, a tail domain.
  • a modular gRNA comprises:
  • a first strand comprising, preferably from 5' to 3' ;
  • a targeting domain (which is complementary to a target nucleic acid in the BCLllA gene, e.g., a targeting domain from Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A- 6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A- 17C, 18A-18E, 19A-19E, 20A-20C, or 31; and
  • a second strand comprising, preferably from 5' to 3':
  • a tail domain optionally, a tail domain.
  • Figs. 1A-1G provide examples of the placement of targeting domains.
  • the targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid.
  • the targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid.
  • the uracil bases in the targeting domain will pair with the adenine bases in the target sequence.
  • the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain.
  • the core domain is fully complementary with the target sequence.
  • the targeting domain is 5 to 50 nucleotides in length.
  • the strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides. In an embodiment, the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • Figs. 1A-1G provide examples of first complementarity domains.
  • the first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the first complementarity domain is 5 to 30 nucleotides in length.
  • the first complementarity domain is 5 to 25 nucleotides in length. In an
  • the first complementary domain is 7 to 25 nucleotides in length. In an
  • the first complementary domain is 7 to 22 nucleotides in length. In an
  • the first complementary domain is 7 to 18 nucleotides in length.
  • the first complementary domain is 7 to 15 nucleotides in length.
  • the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 4-9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length.
  • the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of linking domains.
  • a linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA.
  • the linking domain can link the first and second complementarity domains covalently or non-covalently.
  • the linkage is covalent.
  • the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE.
  • the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain.
  • the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
  • linking domains are suitable for use in unimolecular gRNA molecules.
  • Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length.
  • a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length.
  • a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length.
  • a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain.
  • the linking domain has at least 50% homology with a linking domain disclosed herein.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A.
  • the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • Figs. 1A-1G provide examples of second complementarity domains.
  • the second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
  • the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length.
  • the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the 5' subdomain and the 3' subdomain of the first complementarity domain are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
  • the second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of proximal domains.
  • the proximal domain is 5 to 20 nucleotides in length.
  • the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • a Tail Domain e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of tail domains.
  • the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length.
  • the tail domain nucleotides are from or share homology with sequence from the 5' end of a naturally occurring tail domain, see e.g., Fig. ID or Fig. IE.
  • the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
  • the tail domain is absent or is 1 to 50 nucleotides in length.
  • the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
  • the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription.
  • these nucleotides may be any nucleotides present before the 3' end of the DNA template.
  • these nucleotides may be the sequence UUUUUU.
  • alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
  • the domains of gRNA molecules are described in more detail below.
  • the Targeting Domain is described in more detail below.
  • the "targeting domain" of the gRNA is complementary to the "target domain” on the target nucleic acid.
  • the strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid.
  • Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
  • the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides. In an embodiment, the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-
  • the targeting domain is 20+/-5 nucleotides in length.
  • the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
  • the targeting domain is 30+/- 10 nucleotides in length.
  • the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the targeting domain has full complementarity with the target sequence.
  • the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
  • the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
  • the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides”), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • non-complementary nucleotides two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
  • the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the targeting domain can be modified with a phosphorothioate, or other
  • a nucleotide of the targeting domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a modification at the 2' position on ribose
  • 2- acetylation e.g., a 2' methylation
  • the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in a system in Section IV.
  • the candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain.
  • 1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
  • the targeting domain comprises, preferably in the 5' ⁇ 3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
  • the “core domain” of the targeting domain is complementary to the “core domain target” on the target nucleic acid.
  • the core domain comprises about 8 to about 13 nucleotides from the 3' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
  • the core domain and targeting domain are independently, 6 +1-2, 1+1-
  • the core domain and targeting domain are independently, 10+/-2 nucleotides in length.
  • the core domain and targeting domain are independently, 10+/-4 nucleotides in length.
  • the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, nucleotides in length.
  • the core domain and targeting domain are independently 3 to 20, 4 to
  • the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
  • the core domain is complementary with the core domain target.
  • the core domain has exact complementarity with the core domain target.
  • the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the "secondary domain" of the targeting domain of the gRNA is complementary to the
  • the secondary domain is positioned 5' to the core domain.
  • the secondary domain is absent or optional.
  • the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 11 to 16 nucleotides in length.
  • the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 10 to 15 nucleotides in length.
  • the targeting domain is 22 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 9 to 14 nucleotides in length.
  • the secondary domain is 8 to 13 nucleotides in length. In an embodiment, if the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 7 to 12 nucleotides in length.
  • the targeting domain is 19 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 6 to 11 nucleotides in length.
  • the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 5 to 10 nucleotides in length.
  • the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 4 to 9 nucleotides in length.
  • the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 3 to 8 nucleotides in length.
  • the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
  • the secondary domain is complementary with the secondary domain target.
  • the secondary domain has exact complementarity with the secondary domain target.
  • the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the core domain can comprise a 2 ' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a core domain will contain no more than 1, 2, or 3 modifications. Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV.
  • the candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the secondary domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a secondary domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
  • modifications from Section VIII) of the nucleotides of the secondary domain may differ.
  • (1) may be less than (2).
  • (1) may be greater than (2).
  • (1) and (2) may be the same, e.g., each may be free of modifications.
  • the first complementarity domain is complementary with the second complementarity domain.
  • the first domain does not have exact complementarity with the second complementarity domain target.
  • the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain.
  • 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region.
  • an unpaired, or loop-out, region e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain.
  • the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5' end of the second complementarity domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the first and second complementarity domains are:
  • the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
  • the first and second complementary domains independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the first and second complementary domains independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the domain can comprise a 2 '
  • modification e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the first and second complementary domains independently, include
  • first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • the first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • the first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • the first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • the first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • the first and second are 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications.
  • complementary domains independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end.
  • first and second complementary domains independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the first and second complementary domains independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no nucleotide that is modified within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference first complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • first complementarity domain e.g., from Figs. 1A-1G.
  • the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference second complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • second complementarity domain e.g., from Figs. 1A-1G.
  • the duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
  • the first and second complementarity domains when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • first and second complementarity domains when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded): NNNNNNNNNNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGUUUUGGAAACAAAACAG CAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA GUCGGUGC (SEQ ID NO: 29).
  • nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain.
  • the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • the 5' extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the 5' extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the 5' extension domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
  • the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the 5' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • Modifications in the 5' extension domain can be selected to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate 5' extension domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate 5' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
  • a reference 5' extension domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • 5' extension domain or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
  • the linking domain is disposed between the first and second complementarity domains.
  • the two molecules are associated with one another by the complementarity domains.
  • the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
  • the linking domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length. In an embodiment, the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
  • the linking domain is a covalent bond.
  • the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain.
  • the duplexed region can be 20+/-10 base pairs in length.
  • the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length.
  • the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
  • sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
  • the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the linking domain can be modified with a phosphorothioate, or other
  • a nucleotide of the linking domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • Modifications in a linking domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated a system described in Section IV.
  • a candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
  • the proximal domain is 6 +1-2, 1+1-2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
  • the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
  • the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the proximal domain can be modified with a phosphorothioate, or other
  • a nucleotide of the proximal domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A-1G.
  • a reference proximal domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • proximal domain e.g., from Figs. 1A-1G.
  • the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
  • the tail domain is 20+/-5 nucleotides in length.
  • the tail domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
  • the tail domain is 25+/- 10 nucleotides in length.
  • the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
  • the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from
  • a nucleotide of the tail domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a 2' modification e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8
  • the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the tail domain comprises a tail duplex domain, which can form a tail duplexed region.
  • the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length.
  • a further single stranded domain exists 3' to the tail duplexed domain.
  • this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
  • the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
  • a reference tail domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • tail domain or a tail domain described herein, e.g., from Figs. 1A-1G.
  • proximal and tail domain taken together comprise the following sequences:
  • AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
  • the tail domain comprises the 3' sequence UUUUU, e.g., if a U6 promoter is used for transcription.
  • the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
  • tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used.
  • the tail domain comprises variable 3' sequence derived from the DNA template if a T7 promoter is used.
  • the tail domain comprises variable 3' sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
  • the tail domain comprises variable 3' sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
  • Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • a gRNA has the following structure: 5' [targeting domain] -[first complementarity domain] -[linking domain] -[second complementarity domain] -[proximal domain] -[tail domain] -3'
  • the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
  • the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein;
  • the linking domain is 1 to 5 nucleotides in length
  • the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
  • the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to a targeting domain (which is complementary to a target nucleic acid);
  • a first complementarity domain e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
  • the proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides; (b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides
  • the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 18 nucleotides e.g., 18 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 18 nucleotides in length
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 19 nucleotides e.g., 19 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 19 nucleotides in length
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides
  • the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 23 nucleotides
  • the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUUU (SEQ ID NO: 45).
  • the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUACUAAAAC AAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUUU (SEQ ID NO: 40).
  • the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
  • a modular gRNA comprises:
  • a first strand comprising, preferably from 5' to 3' ;
  • a targeting domain e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
  • a second strand comprising, preferably from 5' to 3':
  • the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • the proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • nucleotides 3' there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 5 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 18 nucleotides
  • the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 19 nucleotides
  • the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides
  • the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides
  • the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
  • the targeting domain comprises, has, or consists of, 26 nucleotides

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Abstract

CRISPR/CAS-related compositions and methods for treatment of Beta-Thalassemia are disclosed.

Description

CRISPR/CAS-RELATED METHODS AND COMPOSITIONS FOR TREATING BETA-
THALASSEMIA
REFERENCE TO RELATED APPLICATIONS
The present application claims the benefit of U.S. Provisional Application No.
61/970,585, filed March 26, 2014, and U.S. Provisional Application No. 62/084,488, filed November 25, 2014, the contents of each of which are hereby incorporated by reference in their entirety.
FIELD OF THE INVENTION
The invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, or modulating expression of a target nucleic acid sequence, and applications thereof in connection with Beta- Thalassemia (BT).
BACKGROUND
Beta- thalassemia (BT) is a disease that causes chronic anemia. Beta- thalassemia major (BTM), a more severe form of the disease, is life threatening unless treated with lifelong blood transfusions and iron chelation therapy. Beta- Thalassemia intermedia does not require blood transfusions. However, it may cause growth delay, significant systemic abnormalities and frequently requires lifelong iron chelation therapy.
Beta-thalassemia is caused by mutations in the beta-globin (HBB) gene. HBB is located on chromosome 11 within the HBB gene cluster, which includes genes encoding the delta globin chain, A gamma chain, and G gamma chain. The alpha globin gene is located on chromosome 16. Normal adult hemoglobin (Hb) is composed of a tetramer made from two alpha globin chains and two beta globin chains. In beta-thalassemia, an imbalance of alpha globin and beta globin chains causes anemia. The mutated beta globin chains result in an excess of alpha globin chains that precipitate in erythroid precursors in the bone marrow.
In beta-thalassemia major, both alleles of the beta-globin gene contain a mutation that leads to complete absence of beta globin production (denoted βο/βο). The absence of beta globin chains leads to significant precipitation of alpha globin chains in erythroid cells and severe anemia. Beta-thalassemia major results from nonsense, frameshift or splicing mutations in beta- globin (HBB).
Beta-thalassemia intermedia is due to reduced production of beta globin chains and/or production of mutant beta globin chains. Subject genotypes are denoted βο/ β+ or β+/ β+. βο represents non-expressing beta globin alleles; β+ represents beta globin alleles with reduced expression. Phenotypic expression varies among subjects. As there is some production of beta globin, there is less precipitation of alpha globin chains in the erythroid precursors and less severe anemia than in beta-thalassemia major. However, in beta-thalassemia intermedia there are more significant consequences of erythroid lineage expansion secondary to chronic anemia. Beta-thalassemia intermedia results from mutations in the 5' or 3' untranslated region of HBB, mutations in the promoter region or polyadenylation signal, or from splicing mutations.
Beta-thalassemia affects approximately 1 in 100,000 people worldwide. Its prevalence is higher in certain populations, including those of European descent, where its prevalence is
approximately 1 in 10,000. In the United States, there are approximately 3,000 subjects with beta-thalassemia major.
Subjects with beta-thalassemia major present between the ages of 6 months and 2 years. Subjects suffer from failure to thrive, fevers, hep ato splenomegaly and diarrhea. Adequate treatment includes regular transfusions. Therapy for beta-thalassemia major also includes splenectomy and treatment with hydroxyurea. If subjects are regularly transfused, they will develop normally until the beginning of the second decade. At that time, they require chelation therapy (in addition to continued transfusions) to prevent the complications of iron overload. Iron overload may manifest as growth delay or delay of sexual maturation. In adulthood, inadequate chelation therapy may lead to cardiomyopathy, cardiac arrhythmias, hepatic fibrosis and/or cirrhosis, diabetes, thyroid and parathyroid abnormalities, thrombosis and osteoporosis. Frequent transfusions also put subjects at risk for infection with HIV, hepatitis B and hepatitis C.
Beta-thalassemia intermedia subjects have a variable phenotype. They generally present between the ages of 2-6 years. They do not generally require blood transfusions. However, bone abnormalities occur due to chronic hypertrophy of the erythroid lineage to compensate for chronic anemia. Subjects may have fractures of the long bones due to osteoporosis.
Extramedullary erythropoiesis is common and leads to enlargement of the spleen, liver and lymph nodes. It may also cause spinal cord compression and neurologic problems. Subjects also suffer from lower extremity ulcers and are at increased risk for thrombotic events, including stroke, pulmonary embolism and deep vein thrombosis.
Treatment of beta-thalassemia intermedia includes, e.g., splenectomy, folic acid supplementation, hydroxyurea therapy and radiotherapy for extramedullary masses. Chelation therapy is used in subjects who develop iron overload.
Life expectancy is often diminished in beta-thalassemia subjects. Subjects with beta- thalassemia major who do not receive adequate transfusion therapy generally die in their second or third decade. Subjects with beta-thalassemia major who receive regular transfusions and adequate chelation therapy can live into their 5th decade and beyond. Cardiac failure secondary to iron toxicity is the leading cause of death in beta-thalassemia major subjects due to iron toxicity.
Thus, there remains a need for additional methods and compositions that can be used to treat Beta-thalassemia. SUMMARY OF THE INVENTION
Methods and compositions discussed herein, provide for the treatment or prevention of beta-thalassemia (BT), including Beta-Thalassemia Major (BTM), a severe form of beta- thalassemia, which is characterized by absence of beta globin production. In healthy individuals, the predominant form of hemoglobin (known as HbA) consists of two beta globin molecules paired with two alpha globin molecules and one molecule of heme. The absence of beta globin leads to severe anemia. Elevating levels of fetal hemoglobin (HbF), in which gamma globin substitutes for beta globin, can significantly moderate the severe anemia of BT. However, the expression of gamma globin is negatively regulated by the BCL11A gene product.
Methods and compositions discussed herein, allow for the treatment or prevention of BT, or its symptoms, e.g., by altering the gene for B-cell CLL/lymphoma 11A (BCL11A). The
BCL11A gene is also known as B-cell CLL/lymphoma 11 A, BCL11A-L, BCL11A-S, BCL11A- XL, CTIP1, HBFQTL5 and ZNF. BCL11A encodes a zinc-finger protein that is involved in the regulation of globin gene expression. By altering the BCL11A gene (e.g., one or both alleles of the BCL11A gene), the levels of gamma globin can be increased. Gamma globin can replace beta globin in the hemoglobin complex and effectively carry oxygen to tissues, thereby ameliorating BT disease phenotypes. In one aspect, methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent BT, by targeting the BCLllA gene, e.g., coding or non-coding regions of the BCLllA gene. Altering the BCLllA gene herein refers to reducing or eliminating (1) BCLllA gene expression, (2) BCL11A protein function, or (3) the level of BCL11A protein.
In an embodiment, the coding region (e.g., an early coding region) of the BCLllA gene is targeted for alteration. In an embodiment, a non-coding sequence (e.g., an enhancer region, a promoter region, an intron, 5'UTR, 3'UTR, or polyadenylation signal) is targeted for alteration.
In an embodiment, the method provides an alteration that comprises disrupting the BCLllA gene by the insertion or deletion of one or more nucleotides mediated by a Cas9 molecule (e.g., an enzymatically active Cas9 (eaCas9) molecule, e.g., Cas9 nuclease or Cas9 nickase) as described below. This type of alteration is also referred to as "knocking out" the BCLllA gene. While not wishing to be bound by theory, in an embodiment, a targeted knockout approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically active Cas9 (eaCas9) molecule.
In another embodiment, the method provides an alteration that does not comprise nucleotide insertion or deletion in the BCLllA gene and is mediated by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein, as described below. This type of alteration is also referred to as "knocking down" the BCLllA gene. While not wishing to be bound by theory, in an embodiment, a targeted knockdown approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically inactive Cas9
(eiCas9) molecule.
In an embodiment, the methods and compositions discussed herein may be used to alter the BCLllA gene to treat or prevent BT by knocking out one or both alleles of the BCLllA gene. In an embodiment, the coding region (e.g., an early coding region) of the BCLllA gene, is targeted to alter the gene. In an embodiment, a non-coding region of the BCLllA gene (e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal) is targeted to alter the gene. In an embodiment, an enhancer (e.g., a tissue-specific enhancer, e.g., a myeloid enhancer, e.g., an erythroid enhancer) is targeted to alter the gene.
BCLllA erythroid enhancer comprises an approximatel2.4 kb fragment of BCLllA intron 2, located between approximate +52.0 to +64.4 kilobases (kb) from the Transcription Start Site (TSS+52kb to TSS+64.4kb, see Fig. 10). It is also referred to herein as chromosome 2 location 60,716,189-60,728,612 (according to UCSC Genome Browser hg 19 human genome assembly). Three deoxyribonuclese I hypersensitive sites (DHSs), TSS+62kb, TSS+58kb and TSS+55kb are located in this region. Deoxyribonuclease I sensitivity is a marker for gene regulatory elements. While not wishing to be bound by theory, it is believed that deleting the enhancer region (e.g., TSS+52kb to TSS+64.4kb) may reduce or eliminate BCLllA expression in erythroid precursors which leads to gamma globin derepression while sparing BCLllA expression in nonerythoroid lineages.
In an embodiment, the method provides an alteration that comprises a deletion of the enhancer region (e.g., a tissue-specific enhancer, e.g., a myleloid enhancer, e.g., an erythroid enhancer) or a protion of the region resulting in disruption of one or more DNase 1- hypersensitivie sites (DHS). In an embodiment, the method provides an alteration that comprises an insertion or deletion of one or more nucleotides.
As described herein, in an embodiment, a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising an enzymatically active Cas9 (eaCas9) molecule. In an embodiment, a targeted knockout approach alters the BCLllA gene. In an embodiment, a targeted knockout approach reduces or eliminates expression of functional BCLllA gene product. In an embodiment, targeting affects one or both alleles of the BCLllA gene. In an embodiment, an enhancer disruption approach reduces or eliminates expression of functional BCLllA gene product in the erythroid lineage.
"BT target knockout position", as used herein, refers to a position in the BCLllA gene, which if altered, e.g., disrupted by insertion or deletion of one or more nucleotides, e.g., by NHEJ-mediated alteration, results in alteration of the BCLllA gene. In an embodiment, the position is in the BCLllA coding region, e.g., an early coding region. In an embodiment, the position is in a BCLllA non-coding region, e.g., an enhancer region.
In an embodiment, methods and compositions discussed herein, provide for altering (e.g., knocking out) the BCLllA gene. In an embodiment, knocking out the BCLllA gene herein refers to (1) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more
nucleotides in close proximity to or within the early coding region of the BCLllA gene, or (2) deletion (e.g., NHEJ-mediated deletion) of genomic sequence including the erythroid enhancer of the BCLllA gene. Both approaches give rise to alteration of the BCLllA gene as described above. In an embodiment, the BT target knockout position is altered by genome editing using the CRISPR/Cas9 system. The BT target knockout position may be targeted by cleaving with either a single nuclease or dual nickases, e.g., to induce insertion or deletion (e.g., NHEJ- mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BT target knockout position or to delete (e.g., mediated by NHEJ) a genomic sequence including the erythroid enhancer of the BCLllA gene.
In an embodiment, the methods and compositions described herein introduce one or more breaks in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, a single strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, the single strand break will be accompanied by an additional single strand break, positioned by a second gRNA molecule.
In an embodiment, a double strand break is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, a double strand break will be accompanied by an additional single strand break positioned by a second gRNA molecule. In an embodiment, a double strand break will be accompanied by two additional single strand breaks positioned by a second gRNA molecule and a third gRNA molecule.
In an embodiment, a pair of single strand breaks is introduced in close proximity to or within the early coding region in at least one allele of the BCLllA gene. In an embodiment, the pair of single strand breaks will be accompanied by an additional double strand break, positioned by a third gRNA molecule. In an embodiment, the pair of single strand breaks will be accompanied by an additional pair of single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
In an embodiment, two double strand breaks are introduced to flank the erythroid enhancer of the BCLllA gene (one 5' and the other one 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. Without wishing to be bound by theory, it is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted deletion of certain elements, such as endogenous splice sites. The breaks, i.e., two double strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein. In an embodiment, two sets of breaks (e.g., one double strand break and a pair of single strand breaks) are introduced to flank the erythroid enhancer in the BCL11A gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. Without wishing to be bound by theory, it is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the double strand break and the pair of single strand breaks) are positioned to avoid unwanted deletion of certain
chromosome elements, such as endogenous splice sites. The breaks, e.g., the double strand break and the pair of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
In an embodiment, two sets of breaks (e.g., two pairs of single strand breaks) are introduced to flank the erythroid enhancer at the BT target position in the BCL11A gene (one set 5' and the other set 3' to the erythroid enhancer) to remove (e.g., delete) the genomic sequence including the erythroid enhancer. Without wishing to be bound by theory, it is contemplated herein that in an embodiment the deletion of the genomic sequence including the erythroid enhancer is mediated by NHEJ. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted deletion of certain chromosome elements, such as endogenous splice sites. The breaks, e.g., the two pairs of single strand breaks, can be positioned upstream and downstream of the erythroid enhancer, as discussed herein.
In an embodiment, the methods and compositions discussed herein may be used to alter the BCL11A gene to treat or prevent BT by knocking down one or both alleles of the BCL11A gene. In one embodiment, the coding region of the BCL11A gene, is targeted to alter the gene. In another embodiment, a non-coding region (e.g., an enhancer region, a promoter region, an intron, 5' UTR, 3'UTR, polyadenylation signal) of the BCL11A gene is targeted to alter the gene. In an embodiment, the promoter region of the BCL11A gene is targeted to knock down the expression of the BCL11A gene. A targeted knockdown approach alters, e.g., reduces or eliminates the expression of the BCL11A gene. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein) to alter transcription, e.g., to block, reduce, or decrease
transcription, of the BCL11A gene. "BT target knockdown position", as used herein, refers to a position, e.g., in the BCL11A gene, which if targeted by an eiCas9 or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional BCL11A gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the BCL11A promoter sequence, In an embodiment, a position in the promoter sequence of the BCL11A gene is targeted by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein, as described herein.
In an embodiment, one or more gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
"BT target position", as used herein, refers to any of a BT target knockout position, or BT target knockdown position.
In one aspect, disclosed herein is a gRNA molecule, e.g., an isolated or non-naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the BCL11A gene.
When two or more gRNAs are used to position two or more cleavage events, e.g., double strand or single strand breaks, in a target nucleic acid, it is contemplated that the two or more cleavage events may be made by the same or different Cas9 proteins. For example, when two gRNAs are used to position two double strand breaks, a single Cas9 nuclease may be used to create both double strand breaks. When two or more gRNAs are used to position two or more single stranded breaks (single strand breaks), a single Cas9 nickase may be used to create the two or more single strand breaks. When two or more gRNAs are used to position at least one double strand break and at least one single strand break, two Cas9 proteins may be used, e.g., one Cas9 nuclease and one Cas9 nickase. It is contemplated that in an embodiment when two or more Cas9 proteins are used that the two or more Cas9 proteins may be delivered sequentially to control specificity of a double strand versus a single strand break at the desired position in the target nucleic acid.
In an embodiment, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecule hybridize to the target domain through complementary base pairing to opposite strands of the target nucleic acid molecule. In an embodiment, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
In an embodiment, the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites, in the target domain. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule.
In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein. In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B. In an embodiment, the targeting domain is independently selected from those in Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F. In an embodiment, the targeting domain is independently selected from those in Tables 1A-1F. In an embodiment, the targeting domain is independently selected from:
UGGCAUCCAGGUCACGCCAG (SEQ ID NO: 387);
GAUGCUUUUUUCAUCUCGAU (SEQ ID NO: 388);
GCAUCCAAUCCCGUGGAGGU (SEQ ID NO: 389);
UUUUCAUCUCGAUUGGUGAA (SEQ ID NO: 390);
CCAGAUGAACUUCCCAUUGG (SEQ ID NO: 391);
AGGAGGUCAUGAUCCCCUUC (SEQ ID NO: 392);
CAUCCAGGUCACGCCAG (SEQ ID NO: 393);
GCUUUUUUCAUCUCGAU (SEQ ID NO: 394);
UCCAAUCCCGUGGAGGU (SEQ ID NO: 395); UCAUCUCGAUUGGUGAA (SEQ ID NO: 396);
GAUGAACUUCCCAUUGG (SEQ ID NO: 397); or
AGGUCAUGAUCCCCUUC (SEQ ID NO: 398).
In an embodiment, when the BT target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 1A-1F.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E. In an embodiment, the targeting domain is independently selected from those in Tables 3A-3E. In another
embodiment, the targeting domain is independently selected from:
GAGCTCCATGTGCAGAACGA (SEQ ID NO: 2574);
GAGCTCCCAACGGGCCG (SEQ ID NO: 2575);
GAGTGCAGAATATGCCCCGC (SEQ ID NO: 2576);
GATAAACAATCGTCATCCTC (SEQ ID NO: 2577);
GATGCCAACCTCCACGGGAT (SEQ ID NO: 2578);
GCAGAATATGCCCCGCA (SEQ ID NO: 2579);
GCATCCAATCCCGTGGAGGT (SEQ ID NO: 2580);
GCCAACCTCCACGGGAT (SEQ ID NO: 2581);
GCTCCCAACGGGCCGTGGTC (SEQ ID NO: 2582); or
GGAGCTCTAATCCCCACGCC (SEQ ID NO: 2583).
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E. In an embodiment, the targeting domain is independently selected from those in Tables 4A-4E.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5B. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5B. In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 12A-12D. In an embodiment, the targeting domain is independently selected from those in Tables 12A-12D.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13E. In an embodiment, the targeting domain is independently selected from those in Tables 13A-13E.
In another embodiment, a position in the coding region, e.g., the early coding region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14B. In an embodiment, the targeting domain is independently selected from those in Tables 14A-14B.
In an embodiment, when the BT target knockout position is the BCL11A coding region, e.g., early coding region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA comprises a targeting domain that is selected from any one of Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6D, 7A-7D, 8, 18A-18E, 19A- 19E, or 20A-20C. In an embodiment, the targeting domain is independently selected from those in Tables 6A-6D, 7A-7D, 8, 18A-18E, 19A-19E, or 20A-20C.
In another embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCL11A gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6D. In an embodiment, the targeting domain is independently selected from those in Tables 6A-6D. In another embodiment, the targeting domain is independently selected from:
GAAAATACTTACTGTACTGC (SEQ ID NO: 4336);
GAAAGCAGTGTAAGGCT (SEQ ID NO: 4337);
GGCTGTTTTGGAATGTAGAG (SEQ ID NO: 4338); or
GTGCTACTTATACAATTCAC (SEQ ID NO: 4339).
In an embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7D. In an embodiment, the targeting domain is independently selected from those in Tables 7A-7D.
In an embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 8. In an embodiment, the targeting domain is independently selected from those in Table 8.
In an embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18E. In an embodiment, the targeting domain is independently selected from those in Tables 18A-18E.
In an embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is independently selected from those in Tables 19A-19E.
In an embodiment, a position in the non-coding region, e.g., the enhancer region, of the BCLllA gene is targeted, e.g., for knockout. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20C. In an embodiment, the targeting domain is independently selected from those in Tables 20A-20C. In an embodiment, when the BT target knockout position is in the non-coding region, e.g., the enhancer region, and more than one gRNA is used to position breaks, e.g., two single strand breaks or two double strand breaks, or a combination of single strand and double strand breaks, e.g., to create one or more deletions, in the target nucleic acid sequence, each guide RNA comprises a targeting domain that is selected from any one of Tables 6A-6D, 7A-7D, 8, 18A- 18E, 19A-19E, or 20A-20C.
In an embodiment, the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to the BCL11A transcription start site (TSS) to reduce (e.g., block) transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase. In an embodiment, the targeting domain is configured to target between 1000 bp upstream and 1000 bp downstream (e.g., between 500 bp upstream and 1000 bp downstream, between 1000 bp upstream and 500 bp downstream, or between 500 bp upstream and 500 bp downstream) of the TSS of the BCL11A gene. One or more gRNA may be used to target an eiCas9 to the promoter region of the BCL11A gene.
In an embodiment, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2C, 9A-9D, 10A-10D, 11, 15A-15C, 16A-16E, or 17A-17C. In an
embodiment, the targeting domain is independently selected from those in Tables 2A-2C, 9A- 9D, 10A-10D, 11, 15A-15C, 16A-16E, or 17A-17C.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2C. In an embodiment, the targeting domain is independently selected from those in Tables 2A-2C.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2,
3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 9A-9D. In an embodiment, the targeting domain is independently selected from those in Tables 9A-9D. In another embodiment, the targeting domain is independently selected from:
GACGACGGCTCGGTTCACAT (SEQ ID NO: 4482);
GACGCCAGACGCGGCCCCCG (SEQ ID NO: 4483);
GCCTTGCTTGCGGCGAGACA (SEQ ID NO: 4484); GGCTCCGCGGACGCCAGACG (SEQ ID NO: 4485);
GACGGCTCGGTTCACAT (SEQ ID NO: 4486);
GCCGCGTCTGGCGTCCG (SEQ ID NO: 4487); or
GCGGGCGGACGACGGCT (SEQ ID NO: 4488).
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10D. In an embodiment, the targeting domain is independently selected from those in Tables 10A-10D.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Table 11. In an embodiment, the targeting domain is independently selected from those in Table 11.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 15A-15C. In an embodiment, the targeting domain is independently selected from those in Tables 15A-15C.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 16A-16E. In an embodiment, the targeting domain is independently selected from those in Tables 16A-16E.
In an embodiment, when the BCL11A promoter region is targeted, e.g., for knockdown, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 17A-17C. In an embodiment, the targeting domain is independently selected from those in Tables 17A-17C.
In an embodiment, the BT target knockdown position is the BCL11A promoter region. In an embodiment, more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein) in the target nucleic acid sequence, each guide RNA comprises a targeting domain that is selected from any one of Tables 2A-2C, 9A-9D, 10A-10D, 11, 15A-15C, 16A-16E, 17A-17C.
In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence described herein, e.g., selected from any one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31. In an embodiment, the targeting domain is selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
In an embodiment, the targeting domain which is complementary with a target domain in the BCLllA gene (e.g., a target domain from a BT target position in the BCLllA gene) is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, the gRNA, e.g., a gRNA comprising a targeting domain, which is complementary with a target domain in the BCLllA gene (e.g., a target domain from a BT target position in the BCL11A gene), is a modular gRNA. In another embodiment, the gRNA is a unimolecular or chimeric gRNA.
A gRNA as described herein may comprise from 5' to 3': a targeting domain
(comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
A cleavage event, e.g., a double strand or single strand break, is generated by a Cas9 molecule. The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule). Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel- associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
In an embodiment, the eaCas9 molecule catalyzes a double strand break. In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In this case, the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N- terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In an
embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
In another aspect, disclosed herein is a nucleic acid, e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain, e.g., with a BT target position, in the BCL11A gene as disclosed herein.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCL11A gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
In an embodiment, the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31.
In an embodiment, the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA. In another embodiment, the nucleic acid encodes a chimeric gRNA. The nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides. In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a gRNA comprising from 5' to 3' : a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first
complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule). In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the targeting domain of said gRNA is complementary.
In an embodiment, the eaCas9 molecule catalyzes a double strand break.
In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In another embodiment, the said eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In another embodiment, the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In another embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., N863A.
A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule.
Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further maycomprise (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the BCL11A gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the BCLllA gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the BCLllA gene.
In an embodiment, a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene, to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by said first gRNA molecule.
In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the
BCLllA gene.
In an embodiment, a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
In an embodiment, the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the
BCLllA gene.
In an embodiment, a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a BT target position in the BCLllA gene to allow alteration, e.g., alteration associated with NHEJ, of a BT target position in the BCLllA gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
In an embodiment, the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, the nucleic acid encodes a second gRNA molecule. The second gRNA is selected to target the same BT target position as the first gRNA molecule. Optionally, the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule. The third gRNA molecule and the fourth gRNA molecule are selected to target the same BT target position as the first and second gRNA molecules.
In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A- 15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31. In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31. In an embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31. In a further embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31.
In an embodiment, the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA. In another embodiment, the nucleic acid encoding a second gRNA is a chimeric gRNA. In another embodiment, when a nucleic acid encodes a third or fourth gRNA, the third and fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any
combination of modular or chimeric gRNAs may be used. A nucleic acid may encode a second, a third, and/or a fourth gRNA, each independently, comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA, each independently, comprising from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In an embodiment, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 35 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein. In an embodiment, (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector. Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
In another embodiment, (a) is present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) is present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecules may be AAV vectors.
In another embodiment, a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein; andfurther comprises (c)(i) a sequence that encodes a second gRNA molecule as described herein and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the BCL11A gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the BCL11A gene. In an embodiment, the nucleic acid comprises (a), (b) and (c)(i). In an embodiment, the nucleic acid comprises (a), (b), (c)(i) and (c)(ii). In an embodiment, the nucleic acid comprises (a), (b), (c)(i), (c)(ii) and (c)(iii). Each of (a) and (c)(i) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
In another embodiment, (a) and (c)(i) are on different vectors. For example, (a) may be present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (c)(i) may be present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. In an embodiment, the first and second nucleic acid molecules are AAV vectors.
In another embodiment, each of (a), (b), and (c)(i) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, one of (a), (b), and (c)(i) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c)(i) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In an embodiment, (a) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, a first AAV vector; and (b) and (c)(i) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (b) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (a) and (c)(i) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (c)(i) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, each of (a), (b) and (c)(i) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector. For example, (a) may be on a first nucleic acid molecule, (b) on a second nucleic acid molecule, and (c)(i) on a third nucleic acid molecule. The first, second and third nucleic acid molecule may be AAV vectors.
In another embodiment, when a third and/or fourth gRNA molecule are present, each of (a), (b), (c)(i), (c) (ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (c) (iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further embodiment, each of (a), (b), (c)(i), (c) (ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
The nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein. The nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein. The promoter and second promoter differ from one another. In an embodiment, the promoter and second promoter are the same.
The nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein. In another aspect, disclosed herein is a composition comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCLllA gene, as described herein. The composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein. A composition of (a) and (b) may further comprise (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein. In an embodiment, the composition is a pharmaceutical composition. The compositions described herein, e.g., pharmaceutical compositions described herein, can be used in the treatment or prevention of BT in a subject, e.g., in accordance with a method disclosed herein.
In another aspect, disclosed herein is a method of altering a cell, e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the BCLllA gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets BCLllA gene, e.g., a gRNA, as described herein.
In an embodiment, the method comprises contacting said cell with (a) and (b).
In an embodiment, the method comprises contacting said cell with (a), (b), and (c).
The targeting domain of the gRNA of (a) and optionally (c) may be selected from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, or a targeting domain of a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
In an embodiment, the method comprises contacting a cell from a subject suffering from or likely to develop BT. The cell may be from a subject that would benefit from having a mutation at a BT target position.
In an embodiment, the cell being contacted in the disclosed method is an erythroid cell. The contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In another embodiment, the contacting step may be performed in vivo. In an embodiment, the method of altering a cell as described herein comprises acquiring knowledge of the sequence of a BT target position in said cell, prior to the contacting step.
Acquiring knowledge of the sequence of a BT target position in the cell may be by sequencing the BCL11A gene, or a portion of the BCL11A gene.
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), and a nucleic acid which encodes a gRNA (a), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(iv) and/or fourth gRNA (c)(iii).
In an embodiment, contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes a gRNA of (a) and optionally a second, third and/or fourth gRNA of (c).
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
In an embodiment, contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b). In another aspect, disclosed herein is a method of treating a subject suffering from or likely to develop BT, e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
(a) a gRNA that targets the BCLllA gene, e.g., a gRNA disclosed herein;
(b) a Cas9 molecule, e.g., a Cas9 molecule disclosed herein; and
optionally, (c)(i) a second gRNA that targets the BCLllA gene, e.g., a second gRNA disclosed herein, and
further optionally, (c)(ii) a third gRNA, and still further optionally, (c)(iii) a fourth gRNA that target the BCL11 A gene, e.g., a third and fourth gRNA disclosed herein.
In an embodiment, contacting comprises contacting with (a) and (b).
In an embodiment, contacting comprises contacting with (a), (b), and (c)(i).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i) and (c)(ii).
In an embodiment, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and (c)(iii).
The targeting domain of the gRNA of (a) or (c) (e.g., (c)(i), (c)(ii), or (c)(iii) may be selected from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31, or a targeting domain of a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A- 4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
In an embodiment, the method comprises acquiring knowledge of the sequence at a BT target position in said subject.
In an embodiment, the method comprises acquiring knowledge of the sequence at a BT target position in said subject by sequencing the BCLllA gene or a portion of the BCLllA gene.
In an embodiment, the method comprises introducing a mutation at a BT target position.
In an embodiment, the method comprises introducing a mutation at a BT target position by NHEJ.
When the method comprises introducing a mutation at a BT target position, e.g., by NHEJ in the coding region or a non-coding region, a Cas9 of (b) and at least one guide RNA (e.g., a guide RNA of (a)) are included in the contacting step. In an embodiment, a cell of the subject is contacted ex vivo with (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by intravenous delivery of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), and optionally
(c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally said second gRNA of (c)(i), and further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA.
In an embodiment, the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of
(c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
When the method comprises (1) introducing a mutation at a BT target position by NHEJ or (2) knocking down expression of the BCL11A gene, e.g., by targeting the promoter region, a Cas9 of (b) and at least one guide RNA, e.g., a guide RNA of (a) are included in the contacting step.
In another aspect, disclosed herein is a cell or a plurality of cells produced (e.g., altered) by a method described herein.
In another aspect, disclosed herein is a reaction mixture comprising a gRNA molecule, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop BT, or a subject which would benefit from a mutation at a BT target position. In another aspect, disclosed herein is a kit comprising, (a) a gRNA molecule described herein, or a nucleic acid that encodes the gRNA, and one or more of the following:
(b) a Cas9 molecule, e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
(c)(i) a second gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
(c) (ii) a third gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
(c)(iii) a fourth gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii).
In an embodiment, the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), and (c)(iii).
In an embodiment, the kit further comprises a governing gRNA molecule, or a nucleic acid that encodes a governing gRNA molecule.
In an aspect, the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject. In an embodiment, the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule. In an embodiment, the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule. In an embodiment, the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage. For example, the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA. While not wishing to be bound by theory, it is believed that altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
The gRNA molecules and methods, as disclosed herein, can be used in combination with a governing gRNA molecule. The compositions and reaction mixtures, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
In yet another aspect, disclosed herein is a gRNA molecule, e.g., a gRNA molecule described herein, for use in treating or preventing BT in a subject, e.g., in accordance with a method of treating or preventing BT as described herein.
In an embodiment, the gRNA molecule is used in combination with a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionally or alternatively, in an embodiment, the gRNA molecule is used in combination with a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
In still another aspect, disclosed herein is use of a gRNA molecule, e.g., a gRNA molecule described herein, in the manufacture of a medicament for treating or preventing BT in a subject, e.g., in accordance with a method of treating preventing BT as described herein.
In an embodiment, the medicament comprises a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionaly or alternatively, in an embodiment, the medicament comprises a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
Headings, including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
Other features and advantages of the invention will be apparent from the detailed description, drawings, and from the claims. BRIEF DESCRIPTION OF THE DRAWINGS
Figs. 1A-1I are representations of several exemplary gRNAs.
Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S.
thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules. Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45). Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737). The N-terminal RuvC-like domain is boxed and indicated with a "Y".
The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated by a "G". Sm: S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: S. thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4). Motif: this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance). The last line of Fig. 3B identifies 4 highly conserved residues.
Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104-177, respectively, in order of appearance). The last line of Fig. 4B identifies 3 highly conserved residues.
Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance). The last line of Fig. 6B identifies 3 highly conserved residues.
Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (N. meningitidis). The N-terminal RuvC-like domain is boxed and indicated with a "Y". The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated with a "G". Sp: S. pyogenes; Nm: N. meningitidis. Motif: this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO: 303). Sequence indicated by an "R" is an SV40 NLS; sequence indicated as "G" is an HA tag; and sequence indicated by an "O" is a synthetic NLS sequence; the remaining (unmarked) sequence is the open reading frame (ORF).
Figs. 9A and 9B are schematic representations of the domain organization of S. pyogenes
Cas 9. Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes). Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
Fig. 10 shows chromosome 2 location (according to UCSC Genome Browser hg 19 human genome assembly) that corresponds to BCLl 1 A intron 2. Three erythroid DHSs are labled as distance in kilobases from BCLl 1A TSS (+62, +58 and +55). BCLl 1A transcription is from right to left.
Fig. 11 depicts the efficiency of NHEJ mediated by a Cas9 molecule and exemplary gRNA molecules targeting three different regions of the BCLl 1 A locus.
Figs. 12A-12B depict detected deletion events resulting from co-transfection of exemplary gRNA molecules, BCLl 1A-2983W and BCLl 1A-2981W.
Fig. 12A depicts schematic of DNA sequence recognized by BCLl 1 A-2983W and BCLl 1A-2981W, which flanks the putative erythroid enhancer elements.
Fig. 12B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
Figs. 13A-13B depict detected deletion events resulting from co-transfection of the exemplary gRNA molecules, BCL11A-2995W and BCL11A-2984W.
Fig. 13A depicts schematic of DNA sequence recognized by BCLl 1 A-2995W and BCLl 1 A-2984W, which flanks the putative erythroid enhancer elements.
Fig. 13B depicts sequenced deletion events from the TOPO cloning of the PCR using primers that flank the enhancer region. A product is obtained when a deletion event has taken place.
DETAILED DESCRIPTION
Definitions
"Domain", as used herein, is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
Calculations of homology or sequence identity between two sequences (the terms are used interchangeably herein) are performed as follows. The sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes). The optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5. The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position. The percent identity between the two sequences is a function of the number of identical positions shared by the sequences.
"Governing gRNA molecule", as used herein, refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence. In an embodiment, a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the BCLllA gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b). In an embodiment, a nucleic acid molecule that encodes a CRISPR/Cas component, e.g., that encodes a Cas9 molecule or a target gene gRNA, comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, it is believed that a governing gRNA molecule complexes with a Cas9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component. In an embodiment, the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the BCLllA gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule. In an embodiment, the governing gRNA, e.g., a Cas9-targeting governing gRNA molecule, or a target gene gRNA-targeting governing gRNA molecule, limits the effect of the Cas9 molecule/target gene gRNA molecule complex-mediated gene targeting. In an embodiment, a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a governing gRNA reduces off-target or other unwanted activity. In an
embodiment, a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
"Modulator", as used herein, refers to an entity, e.g., a drug that can alter the activity
(e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence. In an embodiment, modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non- covalent bond, e.g., the attachment of a moiety, to the subject molecule. In an embodiment, a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule. A modulator can increase, decrease, initiate, or eliminate a subject activity.
"Large molecule", as used herein, refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
A "polypeptide", as used herein, refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
"Non-homologous end joining" or "NHEJ", as used herein, refers to ligation mediated repair and/or non-template mediated repair including, e.g., canonical NHEJ (cNHEJ), alternative NHEJ (altNHEJ), microhomology-mediated end joining (MMEJ), single-strand annealing (SSA), and synthesis-dependent microhomology-mediated end joining (SD-MMEJ).
"A reference molecule", e.g., a reference Cas9 molecule or reference gRNA, as used herein, refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared. For example, a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule. Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus . In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared. In an embodiment, the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
"Replacement", or "replaced", as used herein with reference to a modification of a molecule does not require a process limitation but merely indicates that the replacement entity is present.
"Small molecule", as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
"Subject", as used herein, may mean either a human or non-human animal. The term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats). In an embodiment, the subject is a human. In another embodiment, the subject is poultry.
"Treat", "treating" and "treatment", as used herein, mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
"Prevent", "preventing" and "prevention", as used herein, means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
"X" as used herein in the context of an amino acid sequence, refers to any amino acid (e.g., any of the twenty natural amino acids) unless otherwise specified.
Methods of Altering BCL11A
One approach to increase the expression of HbF involves identification of genes whose products play a role in the regulation of globin gene expression. One such gene is BCL11A. It plays a role in the regulation of γ globin expression. It was first identified because of its role in lymphocyte development. BCL11A encodes a zinc finger protein that is thought to be involved in the stage specific regulation of γ globin expression. BCLl 1 A is expressed in adult erythroid precursor cells and down-regulation of its expression leads to an increase in γ globin expression. In addition, it appears that the splicing of the BCLl 1 A mRNA is developmentally regulated. In embryonic cells, it appears that the shorter BCLl 1 A mRNA variants, known as BCLl 1 A-S and BCLl 1A-XS are primary expressed, while in adult cells, the longer BCLl 1 A-L and BCLl 1A- XL mRNA variants are predominantly expressed. See, Sankaran et al. (2008) Science 322 p. 1839. The BCLl 1A protein appears to interact with the β globin locus to alter its conformation and thus its expression at different developmental stages. Thus, if BCLl 1 A expression is altered e.g., disrupted (e.g., reduced or eliminated), it results in the elevation of γ globin and HbF production.
Disclosed herein are methods for altering the BT target position in the BCLllA gene. Altering the BT target position is achieved, e.g., by:
(1) knocking out the BCLllA gene:
(a) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within the early coding region of the BCLllA gene, or
(b) deletion (e.g., NHEJ-mediated deletion) of genomic sequence including the erythroid enhancer of the BCLllA gene, or
(2) knocking down the BCLllA gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
All approaches give rise to alteration of the BCLllA gene. In one embodiment, methods described herein introduce one or more breaks near the early coding region in at least one allele of the BCLllA gene. In another embodiment, methods described herein introduce two or more breaks to flank the erythroid enhancer of BT target knockout position. The two or more breaks remove (e.g., delete) genomic sequence including the erythorid enhancer. In another
embodiment, methods described herein comprises knocking down the BCLllA gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of BT target knockdown position. All methods described herein result in alteration of the BCLllA gene. NHEJ-mediated introduction of an indel in close proximity to or within the early coding region of the BT knockout position
In an embodiment, the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the BT target knockout position (e.g., the early coding region) of the BCL11A gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the BT target knockout position, such that the break-induced indel could be reasonably expected to span the BT target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the BT target knockout position.
In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a BT target knockout position. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of a BT target knockout position in the BCL11A gene.
In an embodiment, a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the BCL11A gene, to allow alteration, e.g., alteration associated with NHEJ in the BCL11A gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a BT target knockout position in the BCL11A gene. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on one side, e.g., upstream or downstream, of a nucleotide of a BT target knockout position in the BCLllA gene.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCLllA gene. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the BCLllA gene in the BCLllA gene. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the BCLllA gene in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the BCLllA gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a BT target knockout position in the BCL11A gene the early coding region in the BCL11A gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the BCL11A gene. NHEJ-mediated deletion of the erythroid enhancer at the BT target position
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two double strand breaks— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two double strand breaks on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first double strand break is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to
TSS+52.0kb), and the second double strand break is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10). In an embodiment, the two double strand breaks are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two double strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first double strand break may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between
TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb),
and the second double strand break to be paired with the first double strand break may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the first double strand break may be positioned in the BCL11A gene:
(1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb,
(4) between TSS+30kb to TSS+40kb,
(5) between TSS+40kb to TSS+45kb,
(6) between TSS+45kb to TSS+47.5kb,
(7) between TSS+47.5kb to TSS+50kb,
(8) between TSS+50kb to TSS+5 lkb,
(9) between TSS+5 lkb to TSS+51. lkb,
(10) between TSS+51. lkb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb, (15) between TSS+51.6kb to TSS+51.7kb,
(16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second double strand break to be paired with the first double strand break may be positioned in the BCL11A gene:
(1) between TSS+52kb to TSS+53kb,
(2) between TSS+53kb to TSS+54kb,
(3) between TSS+54kb to TSS+55kb,
(4) between TSS+55kb to TSS+56kb,
(5) between TSS+56kb to TSS+57kb,
(6) between TSS+57kb to TSS+58kb,
(7) between TSS+58kb to TSS+59kb,
(8) between TSS+59kb to TSS+60kb,
(9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
(12) between TSS+63kb to TSS+64kb, (13) between TSS+64kb to TSS+64.4kb,
(14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb.
While not wishing to be bound by theory, it is believed that the two double strand breaks allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., one double strand break and a pair of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks (either the double strand break or the pair of single strand breaks) on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCL11A gene. In an embodiment, the first set of breaks (either the double strand break or the pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (either the double strand break or the pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to
TSS+84.7kb) (see Fig. 10). In an embodiment, the two sets of breaks (either the double strand break or the pair of single strand breaks) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two sets of breaks (either the double strand break or the pair of single strand breaks)) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between
TSS+52.0kb to TSS+64.4kb),
and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the first set of breaks (either the double strand break or the pair of single strand breaks) may be positioned in the BCL11A gene:
(1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb,
(4) between TSS+30kb to TSS+40kb,
(5) between TSS+40kb to TSS+45kb,
(6) between TSS+45kb to TSS+47.5kb,
(7) between TSS+47.5kb to TSS+50kb, 8) between TSS+50kb to TSS+51kb,
9) between TSS+51kb to TSS+51.1kb,
(10) between TSS+51.1kb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb,
(15) between TSS+51.6kb to TSS+51.7kb,
(16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second set of breaks (either the double strand break or the pair of single strand breaks) to be paired with the first set of breaks (either the double strand break or the pair of single strand breaks)may be positioned in the BCLllA gene:
(1) between TSS+52kb to TSS+53kb,
(2) between TSS+53kb to TSS+54kb,
(3) between TSS+54kb to TSS+55kb,
(4) between TSS+55kb to TSS+56kb, 5) between TSS+56kb to TSS+57kb,
6) between TSS+57kb to TSS+58kb,
7) between TSS+58kb to TSS+59kb,
8) between TSS+59kb to TSS+60kb,
9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
(12) between TSS+63kb to TSS+64kb,
(13) between TSS+64kb to TSS+64.4kb,
(14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb.
While not wishing to be bound by theory, it is believed that the two sets of breaks (either the double strand break or the pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCL11A gene.
In an embodiment, the method comprises introducing a NHEJ-mediated deletion of a genomic sequence including the erythroid enhancer. As described herein, in one embodiment, the method comprises the introduction of two sets of breaks (e.g., two pairs of single strand breaks)— one 5' and the other 3' to (i.e., flanking) the BT target position (e.g., the erythroid enhancer). Two gRNAs, e.g., unimolecular (or chimeric) or modular gRNA molecules, are configured to position the two sets of breaks on opposite sides of the BT target knockdown position (e.g., the erythroid enhancer) in the BCLllA gene. In an embodiment, the first set of breaks (i.e., the first pair of single strand breaks) is positioned upstream of the the erythroid enhancer within intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), and the second set of breaks (i.e., the second pair of single strand breaks) is positioned downstream of the the erythroid enhancer within intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb) (see Fig. 10). In an embodiment, the two sets of breaks (e.g., two pairs of single strand breaks)) are positioned to remove a portion of the erythroid enhancer resulting in disruption of one or more DHSs. In an embodiment, the breaks (i.e., the two pairs of single strand breaks) are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat, or the endogenous splice sites.
The first pair of single strand breaks may be positioned as follows:
(1) upstream of the 5' end of the erythroid enhancer in intron 2 (e.g., between TSS+0.75kb to TSS+52.0kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid enhancer is removed resulting in disruption of one or more DHSs (e.g., between
TSS+52.0kb to TSS+64.4kb),
and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned as follows:
(1) downstream the 3' end of the erythroid enhancer in intron 2 (e.g., between TSS+64.4kb to TSS+84.7kb), or
(2) within the erythroid enhancer provided that a portion of the erythroid
enhancer is removed resulting in disruption of one or more DHSs (e.g., between TSS+52.0kb to TSS+64.4kb).
For example, the pair of single strand breaks may be positioned in the BCLllA gene: (1) between TSS+0.75kb to TSS+lOkb,
(2) between TSS+lOkb to TSS+20kb,
(3) between TSS+20kb to TSS+30kb, 4) between TSS+30kb to TSS+40kb,
5) between TSS+40kb to TSS+45kb,
6) between TSS+45kb to TSS+47.5kb,
7) between TSS+47.5kb to TSS+50kb,
8) between TSS+50kb to TSS+51kb,
9) between TSS+51kb to TSS+51.1kb,
(10) between TSS+51.1kb to TSS+51.2kb,
(11) between TSS+51.2kb to TSS+51.3kb,
(12) between TSS+51.3kb to TSS+51.4kb,
(13) between TSS+51.4kb to TSS+51.5kb,
(14) between TSS+51.5kb to TSS+51.6kb,
(15) between TSS+51.6kb to TSS+51.7kb,
(16) between TSS+51.7kb to TSS+51.8kb,
(17) between TSS+51.8kb to TSS+51.9kb,
(18) between TSS+51.9kb to TSS+52kb,
(19) between TSS+52kb to TSS+53kb,
(20) between TSS+53kb to TSS+54kb,
(21) between TSS+54kb to TSS+55kb,
(22) between TSS+55kb to TSS+56kb,
(23) between TSS+56kb to TSS+57kb,
(24) between TSS+57kb to TSS+58kb,
(25) between TSS+58kb to TSS+59kb,
(26) between TSS+59kb to TSS+60kb,
(27) between TSS+60kb to TSS+61kb,
(28) between TSS+61kb to TSS+62kb,
(29) between TSS+62kb to TSS+63kb,
(30) between TSS+63kb to TSS+64kb, or
(31) between TSS+64kb to TSS+64.4kb,
and the second pair of single strand breaks to be paired with the first pair of single strand breaks may be positioned in the BCL11A gene:
(1) between TSS+52kb to TSS+53kb, 2) between TSS+53kb to TSS+54kb,
3) between TSS+54kb to TSS+55kb,
4) between TSS+55kb to TSS+56kb,
5) between TSS+56kb to TSS+57kb,
6) between TSS+57kb to TSS+58kb,
7) between TSS+58kb to TSS+59kb,
8) between TSS+59kb to TSS+60kb,
9) between TSS+60kb to TSS+61kb,
(10) between TSS+61kb to TSS+62kb,
(11) between TSS+62kb to TSS+63kb,
( 12) between TSS+63kb to TSS+64kb,
(13) between TSS+64kb to TSS+64.4kb,
(14) between TSS+64.4kb to TSS+65kb,
(15) between TSS+65kb to TSS+65.1kb,
(16) between TSS+65.1kb to TSS+65.2kb,
(17) between TSS+65.2kb to TSS+65.3kb,
(18) between TSS+65.3kb to TSS+65.4kb,
(19) between TSS+65.4kb to TSS+65.5kb,
(20) between TSS+65.5kb to TSS+65.7kb,
(21) between TSS+65.7kb to TSS+65.8kb,
(22) between TSS+65.8kb to TSS+65.9kb,
(23) between TSS+65.9kb to TSS+66kb,
(24) between TSS+66kb to TSS+67kb,
(25) between TSS+67kb to TSS+68kb,
(26) between TSS+68kb to TSS+69kb,
(27) between TSS+69kb to TSS+70kb,
(28) between TSS+70kb to TSS+75kb,
(29) between TSS+75kb to TSS+80kb, or
(30) between TSS+80kb to TSS+84.4kb. While not wishing to be bound by theory, it is believed that the two sets of breaks (e.g., the two pair of single strand breaks) allow for NHEJ-mediated deletion of erythroid enhancer in the BCLllA gene.
Knocking down the BCLllA gene mediated by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
A targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
Methods and compositions discussed herein may be used to alter the expression of the BCLllA gene to treat or prevent BT by targeting a promoter region of the BCLllA gene. In an embodiment, the promoter region, e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the TSS is targeted to knockdown expression of the BCLllA gene. In an embodiment, the methods and compositions discussed herein may be used to knock down the BCLllA gene to treat or prevent BT by targeting 0.5 kb upstream or downstream of the TSS. A targeted knockdown approach reduces or eliminates expression of functional BCLllA gene product. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the BCLllA gene.
Methods to Treat or Prevent BT
Disclosed herein are the approaches to treat or prevent BT, including BTM and BT intermedia, using the compositions and methods described herein.
In one approach, the BCLllA gene is targeted as a targeted knockout or knockdown, e.g., to increase expression of fetal hemoglobin.
While not wishing to be bound by theory, it is considered that increasing levels of fetal hemoglobin (HbF) in subjects with BT may ameliorate disease. Fetal hemoglobin can replace beta hemoglobin in the hemoglobin complex, form adequate tetramers with alpha hemoglobin, and effectively carry oxygen to tissues. Subjects with beta-thalassemia who express higher levels of fetal hemoglobin have been found to have a less severe phenotype. Hydroxyurea, often used in the treatment of beta-thalassemia, may exert its mechanism of action via increasing levels of HbF production.
In an embodiment, knockout or knockdown of the BCLllA gene increases fetal hemoglobin levels in beta-thalassemia subjects and improves phenotype and/or reduces or prevents disease progression. BCL11 A is a zinc-finger repressor that is involved in the regulation of fetal hemoglobin and acts to repress the synthesis of fetal hemoglobin. Knockout of the BCLllA gene in erythroid cells induces increased fetal hemoglobin (HbF) synthesis and increased HbF can result in more effective oxygen carrying capacity in subjects with beta- thalassemia (HbF will form tetramers with hemoglobin alpha).
In an embodiment, the BCLllA knockout or knockdown is targeted specifically to cells of the erythroid lineage. BCLllA knockout in erythroid cells has been found in in vitro studies to have no effect on erythroid growth, maturation and function. In an embodiment, erythroid cells are preferentially targeted, e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or 100% of the targeted cells are erythroid cells. For example, in the case of in vivo delivery, erythroid cells are preferentially targeted, and if cells are treated ex vivo and returned to the subject, erythroid cells are preferentially modified.
In an embodiment, the methods described herein result in increased fetal hemoglobin synthesis in beta thalassemia subjects, thereby improving disease phenotype in subjects with BT. For example, subjects with beta thalassemia major will suffer from less severe anemia and will need fewer blood transfusions. They will therefore have fewer complications arising from transfusions and chelation therapy. In an embodiment, the method described herein increases fetal hemoglobin synthesis and improves the oxygen carrying capacity of erythroid cells. For example, subjects are expected to demonstrate decreased rates of extramedullary erythropoiesis and decreased erythroid hypertrophy within the bone marrow compared to a subject who has not received the therapy. In an embodiment, the method described herein results in reduction of bone fractures, bone abnormalities, splenomegaly, and thrombosis compared to a subject who has not received the therapy.
Knockdown or knockout of one or both BCLllA alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course. In an embodiment, the method comprises initiating treatment of a subject prior to disease onset.
In an embodiment, the method comprises initiating treatment of a subject after disease onset.
In an embodiment, the method comprises initiating treatment of a subject well after disease onset, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 16, 24, 36, 48 or more months after onset of BT, e.g., BTM. While not wishing to be bound by theory it is believed that this treatment may be effective if subjects present well into the course of illness.
In an embodiment, the method comprises initiating treatment of a subject in an advanced stage of disease.
Overall, initiation of treatment for subjects at all stages of disease is expected to prevent negative consequences of disease and be of benefit to subjects.
In an embodiment, the method comprises initiating treatment of a subject prior to disease expression. In an embodiment, the method comprises initiating treatment of a subject in an early stage of disease, e.g., when a subject has tested positive for beta-thalassemia mutations but has no signs or symptoms associated with beta-thalassemia major, minor or intermedia.
In an embodiment, the method comprises initiating treatment of a subject at the appearance of microcytic anemia, e.g., in an infant, child, adult or young adult.
In an embodiment, the method comprises initiating treatment of a subject who is transfusion-dependent.
In an embodiment, the method comprises initiating treatment of a subject who has tested positive for a mutation in a beta globin gene.
In an embodiment, the method comprises initiating treatment at the appearance of any one or more of the following findings associated or consistent with beta-thalassemia major or beta-thalassemia minor: anemia, diarrhea, fever, failure to thrive, frontal bossing, broken long bones, hepatomegaly, splenomegaly, thrombosis, pulmonary embolus, stroke, leg ulcer, cardiomyopathy, cardiac arrhythmia, and evidence of extramedullary erythropoiesis.
In an embodiment, a cell is treated, e.g., ex vivo. In an embodiment, an ex vivo treated cell is returned to a subject.
In an embodiment, allogenic or autologous bone marrow or erythroid cells are treated ex vivo. In an embodiment, an ex vivo treated allogenic or autologous bone marrow or erythroid cells are administered to the subject. In an embodiment, an erythroid cell, e.g., an autologous erythroid cell, is treated ex vivo and returned to the subject. In an embodiment, an autologous stem cell, is treated ex vivo and returned to the subject. In an embodiment, the modified HSCs are administered to the patient following no myeloablative pre-conditioning. In an embodiment, the modified HSCs are administered to the patient following mild myeloablative preconditioning such that following engraftment, some of the hematopoietic cells are devied from the modified HSCs. In other aspects, the HSCs are administered after full myeloablation such that following engraftment, 100% of the hematopoietic cells are derived from the modified HSCs.
In an embodiment, the method comprises delivery of a gRNA molecule and Cas9 molecule by intravenous injection, intramuscular injection, subcutaneous injection, or intra-bone marrow (IBM) injection.
In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by an AAV. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a lentivirus. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a nanoparticle. In an embodiment, the method comprises delivery of a gRNA molecule and/or a Cas9 molecule by a parvovirus, e.g., a modified parvovirus specifically designed to target bone marrow cells and/or CD4 cells. In an embodiment, two or more gRNA molecules (e.g., a second, third or fourth gRNA molecules) are delivered.
I. gRNA Molecules
A gRNA molecule, as that term is used herein, refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid. gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules). A gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
Several exemplary gRNA structures, with domains indicated thereon, are provided in Fig. 1. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter- strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to
3':
a targeting domain (which is complementary to a target nucleic acid in the
BCLllA gene, e.g., a targeting domain from any of Tables 1A-1F, 2A-2C, 3A- 3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31); a first complementarity domain;
a linking domain;
a second complementarity domain (which is complementary to the first
complementarity domain);
a proximal domain; and
optionally, a tail domain.
In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain (which is complementary to a target nucleic acid in the BCLllA gene, e.g., a targeting domain from Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A- 6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A- 17C, 18A-18E, 19A-19E, 20A-20C, or 31; and
a first complementarity domain; and
a second strand, comprising, preferably from 5' to 3':
optionally, a 5' extension domain;
a second complementarity domain;
a proximal domain; and
optionally, a tail domain.
The domains are discussed briefly below:
The Targeting Domain
Figs. 1A-1G provide examples of the placement of targeting domains. The targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid. The targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid. It is understood that in a targeting domain and target sequence pair, the uracil bases in the targeting domain will pair with the adenine bases in the target sequence. In an embodiment, the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain. In an embodiment, the core domain is fully complementary with the target sequence. In an embodiment, the targeting domain is 5 to 50 nucleotides in length. The strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides. In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
Targeting domains are discussed in more detail below.
The First Complementarity Domain
Figs. 1A-1G provide examples of first complementarity domains.
The first complementarity domain is complementary with the second complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, the first complementarity domain is 5 to 30 nucleotides in length. In an
embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an
embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an
embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
In an embodiment, the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 4-9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length. In an embodiment, the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length. In an embodiment, the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
The first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
First complementarity domains are discussed in more detail below. The Linking Domain
Figs. 1A-1G provide examples of linking domains.
A linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA. The linking domain can link the first and second complementarity domains covalently or non-covalently. In an embodiment, the linkage is covalent. In an embodiment, the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE. In an embodiment, the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain. Typically the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
In modular gRNA molecules the two molecules are associated by virtue of the
hybridization of the complementarity domains see e.g., Fig. 1A.
A wide variety of linking domains are suitable for use in unimolecular gRNA molecules. Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length. In an embodiment, a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length. In an embodiment, a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length. In an embodiment, a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain. In an embodiment, the linking domain has at least 50% homology with a linking domain disclosed herein.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
Linking domains are discussed in more detail below.
The 5' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A. In an embodiment, the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length. The Second Complementarity Domain
Figs. 1A-1G provide examples of second complementarity domains.
The second complementarity domain is complementary with the first complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, e.g., as shown in Figs. 1A-1B, the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
In an embodiment, the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length. In an embodiment, the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length. In an embodiment, the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
In an embodiment, the 5' subdomain and the 3' subdomain of the first complementarity domain, are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
The second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
A Proximal domain
Figs. 1A-1G provide examples of proximal domains.
In an embodiment, the proximal domain is 5 to 20 nucleotides in length. In an embodiment, the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein. A Tail Domain
Figs. 1A-1G provide examples of tail domains.
As can be seen by inspection of the tail domains in Figs. 1A-1E, a broad spectrum of tail domains are suitable for use in gRNA molecules. In an embodiment, the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In embodiment, the tail domain nucleotides are from or share homology with sequence from the 5' end of a naturally occurring tail domain, see e.g., Fig. ID or Fig. IE. In an embodiment, the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
In an embodiment, the tail domain is absent or is 1 to 50 nucleotides in length. In an embodiment, the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
In an embodiment, the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription. When a T7 promoter is used for in vitro transcription of the gRNA, these nucleotides may be any nucleotides present before the 3' end of the DNA template. When a U6 promoter is used for in vivo transcription, these nucleotides may be the sequence UUUUUU. When alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
The domains of gRNA molecules are described in more detail below. The Targeting Domain
The "targeting domain" of the gRNA is complementary to the "target domain" on the target nucleic acid. The strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid. Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
In an embodiment, the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides. In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-
5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the targeting domain is 20+/-5 nucleotides in length.
In an embodiment, the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
In an embodiment, the targeting domain is 30+/- 10 nucleotides in length.
In an embodiment, the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
Typically the targeting domain has full complementarity with the target sequence. In an embodiment the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3' end.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides"), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
In an embodiment, there are no noncomplementary nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the targeting domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the targeting domain can be modified with a phosphorothioate, or other
modification(s) from Section VIII. In an embodiment, a nucleotide of the targeting domain can comprise a 2' modification (e.g., a modification at the 2' position on ribose), e.g., a 2- acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
Modifications in the targeting domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in a system in Section IV. The candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain. In another embodiment,
1, 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
In an embodiment, the targeting domain comprises, preferably in the 5'→3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
The Core Domain and Secondary Domain of the Targeting Domain
The "core domain" of the targeting domain is complementary to the "core domain target" on the target nucleic acid. In an embodiment, the core domain comprises about 8 to about 13 nucleotides from the 3' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
In an embodiment, the core domain and targeting domain, are independently, 6 +1-2, 1+1-
2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2, or 16+-2, nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-2 nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-4 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, or 18, nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 3 to 20, 4 to
20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length. In an embodiment, the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to 11, 8 to 10 or 8 to 9 nucleotides in length.
The core domain is complementary with the core domain target. Typically the core domain has exact complementarity with the core domain target. In an embodiment, the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
The "secondary domain" of the targeting domain of the gRNA is complementary to the
"secondary domain target" of the target nucleic acid.
In an embodiment, the secondary domain is positioned 5' to the core domain.
In an embodiment, the secondary domain is absent or optional.
In an embodiment, if the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 11 to 16 nucleotides in length.
In an embodiment, if the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 10 to 15 nucleotides in length.
In an embodiment, if the targeting domain is 22 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 9 to 14 nucleotides in length.
In an embodiment, if the targeting domain is 21 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 8 to 13 nucleotides in length. In an embodiment, if the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 7 to 12 nucleotides in length.
In an embodiment, if the targeting domain is 19 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 6 to 11 nucleotides in length.
In an embodiment, if the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 5 to 10 nucleotides in length.
In an embodiment, if the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 4 to 9 nucleotides in length.
In an embodiment, if the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 3 to 8 nucleotides in length.
In an embodiment, the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
The secondary domain is complementary with the secondary domain target. Typically the secondary domain has exact complementarity with the secondary domain target. In an embodiment the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not
complementary with the corresponding nucleotide of the secondary domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the core domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the core domain can comprise a 2 ' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. Typically, a core domain will contain no more than 1, 2, or 3 modifications. Modifications in the core domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the secondary domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. Typically, a secondary domain will contain no more than 1, 2, or 3 modifications.
Modifications in the secondary domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target, may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
In an embodiment, (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g.,
modifications from Section VIII) of the nucleotides of the secondary domain, may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications.
The First and Second Complementarity Domains
The first complementarity domain is complementary with the second complementarity domain.
Typically the first domain does not have exact complementarity with the second complementarity domain target. In an embodiment, the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain. In an embodiment, 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides, will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region. In an embodiment, an unpaired, or loop-out, region, e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain. In an embodiment, the unpaired region begins 1, 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5' end of the second complementarity domain.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the first and second complementarity domains are:
independently, 6 +1-2, 1+1-2, 8+/-2, 9+/-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2, 21+/-2, 22+/-2, 23+/-2, or 24+/-2 nucleotides in length;
independently, 6, 7, 8, 9, 10, 11, 12, 13, 14, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26, nucleotides in length; or
independently, 5 to 24, 5 to 23, 5 to 22, 5 to 21, 5 to 20, 7 to 18, 9 to 16, or 10 to 14 nucleotides in length.
In an embodiment, the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
In an embodiment, the first and second complementary domains, independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
In an embodiment, the first and second complementary domains, independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the domain can comprise a 2 '
modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the first and second complementary domains, independently, include
1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second
complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the first and second complementary domains, independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no nucleotide that is modified within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
Modifications in a complementarity domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G.
In an embodiment, the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
The duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
In an embodiment, the first and second complementarity domains, when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 5).
In an embodiment, the first and second complementarity domains, when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGAAAAGCAUAGCAAGUUA AAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 27).
In an embodiment the first and second complementarity domains, when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGGAAACAGCAUAGCAAGU UAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC
(SEQ ID NO: 28).
In an embodiment the first and second complementarity domains, when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded): NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGUUUUGGAAACAAAACAG CAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA GUCGGUGC (SEQ ID NO: 29).
In an embodiment, nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAGAAAUAGCAAGUUAAUAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 30); NNNNNNNNNNNNNNNNNNNNGUUUAAGAGCUAGAAAUAGCAAGUUUAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 31); or NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAUGCUGUAUUGGAAACAAU AC AG CAUAGCAAGUUAAUAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGA GUCGGUGC (SEQ ID NO: 32).
The 5' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain. In an embodiment, the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
In an embodiment, the 5' extension domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the 5' extension domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment, a nucleotide of the 5' extension domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
modification(s) from Section VIII.
In an embodiment, the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
Modifications in the 5' extension domain can be selected to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate 5' extension domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate 5' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
The Linking Domain
In a unimolecular gRNA molecule the linking domain is disposed between the first and second complementarity domains. In a modular gRNA molecule, the two molecules are associated with one another by the complementarity domains.
In an embodiment, the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the linking domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length. In an embodiment, the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
In an embodiment, the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
17, 18, 19, or 20 nucleotides in length.
In and embodiment, the linking domain is a covalent bond.
In an embodiment, the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain. In an embodiment, the duplexed region can be 20+/-10 base pairs in length. In an embodiment, the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length. In an embodiment, the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 base pairs in length.
Typically the sequences forming the duplexed region have exact complementarity with one another, though in an embodiment as many as 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
In an embodiment, the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the linking domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the linking domain can be modified with a phosphorothioate, or other
modification(s) from Section VIII. In an embodiment a nucleotide of the linking domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. In an embodiment, the linking domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
Modifications in a linking domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated a system described in Section IV. A candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
The Proximal Domain
In an embodiment, the proximal domain is 6 +1-2, 1+1-2, 8+/-2, 9+1-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
In an embodiment, the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
In an embodiment, the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the proximal domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the proximal domain can be modified with a phosphorothioate, or other
modification(s) from Section VIII. In an embodiment a nucleotide of the proximal domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
In an embodiment, the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A-1G.
The Tail Domain
In an embodiment, the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the tail domain is 20+/-5 nucleotides in length.
In an embodiment, the tail domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
In an embodiment, the tail domain is 25+/- 10 nucleotides in length.
In an embodiment, the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In another embodiment, the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
In an embodiment, the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length. In an embodiment, the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the tail domain comprises one or more modifications, e.g., modifications that it render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from
Section VIII. In an embodiment a nucleotide of the tail domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8
modifications. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the tail domain comprises a tail duplex domain, which can form a tail duplexed region. In an embodiment, the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length. In an embodiment, a further single stranded domain, exists 3' to the tail duplexed domain. In an embodiment, this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
In an embodiment, the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
In an embodiment, the proximal and tail domain, taken together comprise the following sequences:
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCU (SEQ ID NO: 33), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGGUGC (SEQ ID NO: 34), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCGGAUC (SEQ ID NO: 35), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUG (SEQ ID NO: 36), or
AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
AAGGCUAGUCCG (SEQ ID NO: 38). In an embodiment, the tail domain comprises the 3' sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
In an embodiment, the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
In an embodiment, tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used.
In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template if a T7 promoter is used.
In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
In an embodiment, the tail domain comprises variable 3' sequence derived from the DNA template, e., if a pol-II promoter is used to drive transcription.
Modifications in the tail domain can be selected to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
In an embodiment a gRNA has the following structure: 5' [targeting domain] -[first complementarity domain] -[linking domain] -[second complementarity domain] -[proximal domain] -[tail domain] -3'
wherein, the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein;
the linking domain is 1 to 5 nucleotides in length;
the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
Exemplary Chimeric gRNAs
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to a targeting domain (which is complementary to a target nucleic acid);
a first complementarity domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, or 26 nucleotides;
a linking domain;
a second complementarity domain (which is complementary to the first complementarity domain);
a proximal domain; and
a tail domain,
wherein,
(a) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides; (b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
In an embodiment, the proximal and tail domain, when taken together, comprise at least
15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is
complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides
(e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides
(e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides
(e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGG CUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUUUU (SEQ ID NO: 45). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
In some embodiments, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number: NNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUACUAAAAC AAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUUUU (SEQ ID NO: 40). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
The sequences and structures of exemplary chimeric gRNAs are also shown in Figs. 1H-
II.
Exemplary Modular gRNAs
In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
25, or 26 nucleotides;
a first complementarity domain; and
a second strand, comprising, preferably from 5' to 3':
optionally a 5' extension domain;
a second complementarity domain;
a proximal domain; and
a tail domain,
wherein:
(a) the proximal and tail domain, when taken together, comprise
at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
(b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein. In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is
complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides
(e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 5 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides
(e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides
(e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides
(e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides
(e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40,
45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41,
46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
II. Methods for Designing gRNAs
Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
Methods for selection and validation of target sequences as well as off-target analyses are described, e.g., in Mali et al., 2013 Science 339(6121): 823-826; Hsu et al. Nat Biotechnol, 31(9): 827-32; Fu et al., 2014 Nat Biotechnol, doi: 10.1038/nbt.2808. PubMed PMID: 24463574; Heigwer et al., 2014 Nat Methods l l(2): 122-3. doi: 10.1038/nmeth.2812. PubMed PMID:
24481216; Bae et al., 2014 Bioinformatics PubMed PMID: 24463181; Xiao A et al., 2014 Bioinformatics PubMed PMID: 24389662.
For example, a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage. For each possible gRNA choice using S. pyogenes Cas9, software tools can identify all potential off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to a certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs. The cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme. Each possible gRNA can then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage. Other functions, e.g., automated reagent design for gRNA vector construction, primer design for the on-target
Surveyor assay, and primer design for high-throughput detection and quantification of off -target cleavage via next-generation sequencing, can also be included in the tool. Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein. Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas- OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA- guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off- target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are
computationally determined , an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality or presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of S. aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a
NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer, 21-mer, 22- mer, 23-mer and 24-mer gRNAs were designed. Tarteting domains, disclosed herein, may comprise the 17-mer described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A- 7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A- 6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A- 17C, 18A-18E, 19A-19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 18-mer described in Tables Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A- 18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A- 6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A- 17C, 18A-18E, 19A-19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 19-mer described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A- 9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A- 18E, 19A-19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 21-mer described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A- 10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A- 19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 22-mer described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
Tarteting domains, disclosed herein, may comprises the 23-mer described in Tables 1A-1F, 2A- 2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A- 14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 1A- 1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A- 13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31. Tarteting domains, disclosed herein, may comprises the 24-mer described in Tables 1A-1F, 2A-2C, 3A- 3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B,
15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31 gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two considerations:
1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and
cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock out the BCL11 A gene
gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to induce an insertion or deletion of one or more nucleotides mediated by NHEJ in close proximity to or within the early coding region. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In onestrategy, the gRNAs were identified and ranked into 4 tires for S. pyogenes (Tables 1A-1D). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes Cas9 to knockout the BCL11A gene were selected based on (1) a reasonable distance to the target position, and (2) a high level of orthogonality. Tier 2 gRNAs were selected based on (1), a reasonable distance to the target position, and (2) presence of a 5'G. Tier 3 used the same distance restriction, but removed the requirement of good orthogonality and the 5'G. Tier 4 only required the presence in the coding sequence. Note that tiers are non-inclusive (each gRNA is listed only once). gRNAs for use with the S. aureus (Table IE J, and N. meningitidis (Table IF J Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but were listed in a single list. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a second strategy, the gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 3A-3E), and S. aureus (Tables 4A-4E); and 2 tiers for N. meningitidis (Tables 5A-5B). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon), (2) a high level of orthogonality and (3) the presence of a 5 ' G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon) and (2) the presence of a 5 ' G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon). The targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). For N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon). The targeting domain for tier 2 gRNA molecules were selected based on distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a third strategy, the gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 12A-12D), and N. meningitidis (Tables 14A-14B); and 5 tiers for S. aureus (Tables 13A-13E). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a the target site (e.g., the start codon) mutation, e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site, e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., the start codon). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In an embodiment, when a single gRNA molecule is used to target a Cas9 nickase to create a single strand break in close proximity to the BCLl 1A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, when a single gRNA molecule is used to target a Cas9 nuclease to create a double strand break to in closeproximity to the BCLl 1 A target position, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, dual targeting is used to create two double strand breaks to in closeproximity to the mutation, e.g., the gRNA is used to target either upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1A target position), or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCL11A gene. In an embodiment, the first and second gRNAs are used to target two Cas9 nucleases to flank, e.g., the first of gRNA is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), and the second gRNA is used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCLl 1 A gene.
In an embodiment, dual targeting is used to create a double strand break and a pair of single strand breaks to delete a genomic sequence including the BCLl 1 A target position. In an embodiment, the first, second and third gRNAs are used to target one Cas9 nuclease and two Cas9 nickases to flank, e.g., the first gRNA that will be used with the Cas9 nuclease is used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1A target position) or downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position), and the second and third gRNAs that will be used with the Cas9 nickase pair are used to target the opposite side of the mutation (e.g., within 200 bp upstream or downstream of the BCLl 1A target position) in the BCL11A gene.
In an embodiment, when four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four single strand breaks to delete genomic sequence including the mutation, the first pair and second pair of gRNAs are used to target four Cas9 nickases to flank, e.g., the first pair of gRNAs are used to target upstream of (e.g., within 500 bp, e.g., within 200 bp upstream of the BCLl 1 A target position), and the second pair of gRNAs are used to target downstream of (e.g., within 500 bp, e.g., within 200 bp downstream of the BCLl 1A target position) in the BCLl 1 A gene.
In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 12D (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 12D (for S. pyogenes). For example, BCLl 1A-5355 or BCLl 1 A- 5380 can be combined with BCLl 1A-5321 or BCLl 1A-5416; or BCLl 1A-5333, BCLl 1A-5354, or BCLl lA-5329 can be combined with BCLl lA-5367 or BCLl lA-5341.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock down the BCLl 1 A gene
gRNAs were designed for use with one or more of S. pyogenes, S. aureus and N.
meningitidis Cas9 molecules, e.g., enzymatically inactive Cas9 (eiCas9) molecules or Cas9 fusion proteins (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter (e.g., to block, reduce, or decrease) the transcription of the BCLl 1 A gene. As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis one or more Cas9 molecules.
In one strategy, the targeting domains for gRNA molecules to knockdown the BCLl 1 A gene were desgined to target the lkb of sequence 3' of the start codon. They were listed in a single list for S. pyogenes (Table 2A), S. aureus (Table 2B) and N. meningitidis (Table 2C).
In a second strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 9A-9D), and S. aureus (Tables 10A-10D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 11). For S. pyogenes, and S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., a
transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) , (2) a high level of orthogonality and (3) the presence of a 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) the presence of a 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). In a third strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 3 tiers for S. pyogenes (Tables 15A-15C). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with S.
pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 16A-16E). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site), and (2) PAM is NNGRRV. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site, and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N.
meningitidis (Tables 17A-17C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) distance to the target site (e.g., the transcription start site), e.g., within 500bp (e.g., upstream or downstream) of the target site (e.g., the transcription start site). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on distance to the target site (e.g., the transcription start site), e.g., within the additional 500 bp upstream and downstream of the transcription start site (i.e., extending to 1 kb upstream and downstream of the transcription start site. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to remove (e.g., delete) the enhancer region the BCL11A gene
gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes to remove (e.g., delete) the enhancer region in the BCL11A gene. As an example, two strategies were utilized to identify gRNAs for use with one or more of S. pyogenes, S. aureus and N. meningitidis Cas9 molecules.
In a strategy, the gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 6A-6D) and for S. aureus (Tables 7A-7D). The gRNAs were identified and listed in a single list for N. meningitidis (Table 8). The targeting domains for tier 1 gRNA molecules for use with the S. pyogenes, S. aureus Cas9 were selected based on (1) a reasonable distance to the target position, e.g., within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of a 5'G. For selection of tier 2 gRNAs, reasonable distance and high orthogonality were required but the presence of a 5'G was not required. Tier 3 uses the same distance restriction and the requirement for a 5'G, but removes the requirement of good orthogonality. Tier 4 uses the same distance restriction but removes the requirement of good orthogonality and the 5'G. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In a second strategy, gRNAs were designed for use with S. pyogenes, S. aureus and N. meningitidis Cas9 molecules. The gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 18A-18E). The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5'G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) presence of 5'G. The targeting domain to be used with S. pyogenes Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). The gRNAs were identified and ranked into 5 tiers for S. aureus, when the relevant PAM was NNGRRT or NNGRRV (Tables 19A-19E). The targeting domain to be used with S. aureus Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality, (3) ) presence of 5'G and (4) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) presence of 5'G and (3) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 4 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and (2) PAM is NNGRRT. The targeting domain to be used with S. aureus Cas9 enzymes for tier 5 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and (2) PAM is NNGRRV. The gRNAs were identified and ranked into 3 tiers for N. meningitidis (Tables 20A-20C). The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 1 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), (2) a high level of orthogonality and (3) presence of 5'G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 2 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) a high level of orthogonality. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 3 gRNA molecules were selected based on (1) within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and (2) presence of 5'G. The targeting domain to be used with N. meningitidis Cas9 enzymes for tier 4 gRNA molecules were selected based on within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes, S. aureus and N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D in Table 18E (for S. pyogenes). It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D in Table 18E (for S. pyogenes). For example, BCL11A-13271 or
BCLl lA-13264 can be combined with BCLl lA-13276; or BCLl lA-13262 or BCLl lA-13282 can be combined with BCLl lA-13290 or BCLl lA-13280.
In an embodiment, two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule. In another embodiment, when two or more (e.g., three or four) gRNAs are used with two or more Cas9 molecules, at least one Cas9 molecule is from a different species than the other Cas9 molecule(s). For example, when two gRNA molecules are used with two Cas9 molecules, one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
Any of the targeting domains in the tables described herein can be used with a Cas9 nickase molecule to generate a single strand break.
Any of the targeting domains in the tables described herein can be used with a Cas9 nuclease molecule to generate a double strand break.
When two gRNAs designed for use to target two Cas9 molecules, one Cas9 can be one species, the second Cas9 can be from a different species. Both Cas9 species are used to generate a single or double- strand break, as desired.
It is contemplated herein that any upstream gRNA described herein may be paired with any downstream gRNA described herein. When an upstream gRNA designed for use with one species of Cas9 is paired with a downstream gRNA designed for use from a different species of Cas9, both Cas9 species are used to generate a single or double-strand break, as desired.
Exemplary Targeting Domains
Table 1A provides exemplary targeting domains for knocking out the BCL11A gene selected according to first tier parameters. The targeting domains are selected based on close proximity to start of the coding sequence and orthogonality in the human genome. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a Cas9 molecule (e.g., a S. pyogenes Cas9 molecule) that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a Cas9 (e.g., a S. pyogenes Cas9 nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using Cas9 nickases (e.g., a S. pyogenes Cas9 nickase) with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. In an embodiment, two 20-mer guide RNAs are used to target two Cas9 nucleases (e.g., two S. pyogenes Cas9 nucleases) or two Cas9 nickases (e.g., two S. pyogenes Cas9 nickases), e.g., BCLl lA-31 and BCLl lA-40, BCLl lA-30 and BCLl 1A-42, or BCLl lA-24 and BCL11A- 53 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., BCLl 1A-79 and BCLl 1A-90, BCLl 1A-77 and BCLl 1A-92, or BCLl 1 A- 71 and BCLl 1 A- 103 are used.
Table 1A
Figure imgf000109_0001
Table IB provides exemplary targeting domains for knocking out the BCLl 1 A gene selected according to second tier parameters. The targeting domains are selected based on close proximity to start of the coding sequence and presence of a 5' G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table IB
Figure imgf000110_0001
Table 1C provides exemplary targeting domains for knocking out the BCL11A gene selected according to third tier parameters. The targeting domains are selected based on close proximity to start of the coding sequence. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 1C
Figure imgf000111_0001
BCLllA-20 - AUCAUGACCUCCUCACCUGU 20 451
BCLllA-44 + AUCUCGAUUGGUGAAGGGGA 20 452
BCLllA-67 - AUGACCUCCUCACCUGU 17 453
BCLllA-138 + AUGUGCAGAACGAGGGG 17 454
BCLllA-3 + AUUCCCGU UUGCUUAAGUGC 20 455
BCLllA-95 + AUUGGUGAAGGGGAAGG 17 456
BCLllA-26 - CACAAACGGAAACAAUGCAA 20 457
BCLllA-134 + CACUCAUCCCAGGCGUG 17 458
BCLllA-139 + CAGAACGAGGGGAGGAG 17 459
BCLllA-69 - CAGAUGAACUUCCCAUU 17 460
BCLllA-96 + CAGCUUUUUCUAAGCAG 17 461
BCLllA-86 + CAUCCUCUGGCGUGACC 17 462
BCLllA-93 + CAUCUCGAUUGGUGAAG 17 463
BCLllA-100 + CAUCUGGCACUGCCCAC 17 464
BCLllA-66 - CAUGACCUCCUCACCUG 17 465
BCLllA-99 + CCAAUGGGAAGUUCAUC 17 466
BCLllA-46 + CCACAGCUU UUUCUAAGCAG 20 467
BCLllA-62 - CCAGACCACGGCCCGUU 17 468
BCLllA-68 - CCAGAUGAACUUCCCAU 17 469
BCLllA-8 - CCAGCACUUAAGCAAAC 17 470
BCLllA-107 + CCCAACGGGCCGUGGUC 17 471
BCLllA-7 - CCCAGCACUUAAGCAAA 17 472
BCLllA-49 + CCCCCAAUGGGAAGUUCAUC 20 473
BCLllA-55 + CCCCUUCUGGAGCUCCCAAC 20 474
BCLllA-18 - CCCGUUGGGAGCUCCAGAAG 20 475
BCLllA-9 + CCCGUU UGCUUAAGUGC 17 476
BCLllA-63 - CCGUUGGGAGCUCCAGA 17 477
BCLllA-10 + CCGUUUGCUUAAGUGCU 17 478
BCLllA-27 - CCUCUGCUUAGAAAAAGCUG 20 479
BCLllA-104 + CCUUCUGGAGCUCCCAA 17 480
BCLllA-36 + CGUCAUCCUCUGGCGUGACC 20 481
BCLllA-78 - CGUGGAGGUUGGCAUCC 17 482
BCLllA-64 - CGUUGGGAGCUCCAGAA 17 483
BCLllA-11 + CGUU UGCUUAAGUGCUG 17 484
BCLllA-84 + CUAUGUGUUCCUGUU UG 17 485
BCLllA-136 + CUCCAUGUGCAGAACGA 17 486
BCLllA-128 - CUCUAAUCCCCACGCCU 17 487
BCLllA-118 + CUGCACUCAUCCCAGGCGUG 20 488
BCLllA-74 - CUGCUUAGAAAAAGCUG 17 489
BCLllA-56 + CUGGAGCUCCCAACGGGCCG 20 490
BCLllA-87 + CUGGAUGCCAACCUCCA 17 491
BCLllA-105 + CUUCUGGAGCUCCCAAC 17 492 BCLllA-124 - UAAACUUCUGCACUGGA 17 493
BCLllA-98 + UAAGAAUGUCCCCCAAU 17 494
BCLllA-34 - UAGAGGAAUUUGCCCCAAAC 20 495
BCLllA-131 + UAUUCUGCACUCAUCCC 17 496
BCLllA-137 + U CCAU G U G C AG AACG AG 17 497
BCLllA-122 + UCCAUGUGCAGAACGAGGGG 20 498
BCLllA-126 - UCCCCUCGUUCUGCACA 17 499
BCLllA-54 + UCCCCUUCUGGAGCUCCCAA 20 500
BCLllA-31 - UCCCGUGGAGGUUGGCAUCC 20 501
BCLllA-5 + UCCCGU UUGCUUAAGUGCUG 20 502
BCLllA-110 - UCCUCCCCUCGUUCUGCACA 20 503
BCLllA-94 + UCGAUUGGUGAAGGGGA 17 504
BCLllA-45 + UCGAUUGGUGAAGGGGAAGG 20 505
BCLllA-117 + UCUGCACUCAUCCCAGGCGU 20 506
BCLllA-51 + UCUGGCACUGCCCACAGGUG 20 507
BCLllA-59 + UCUGUAAGAAUGGCUUCAAG 20 508
BCLllA-14 - UGAACCAGACCACGGCCCGU 20 509
BCLllA-132 + UGCACUCAUCCCAGGCG 17 510
BCLllA-129 - UGCAGAAUAUGCCCCGC 17 511
BCLllA-22 - UGCCAGAUGAACUUCCCAUU 20 512
BCLllA-82 + UGCUAUGUGUUCCUGU U 17 513
BCLllA-88 + UGGAUGCCAACCUCCAC 17 514
BCLllA-58 + UGGUUCAUCAUCUGUAAGAA 20 515
BCLllA-33 - UGU UUAUCAACGUCAUCUAG 20 516
BCLllA-80 - UUAUCAACGUCAUCUAG 17 517
BCLllA-25 - UUAUUUUUAUCGAGCACAAA 20 518
BCLllA-108 + UUCAUCAUCUGUAAGAA 17 519
BCLllA-91 + UUCAUCUCGAUUGGUGA 17 520
BCLllA-4 + UUCCCGUUUGCU UAAGUGCU 20 521
BCLllA-116 + UUCUGCACUCAUCCCAGGCG 20 522
BCLllA-43 + UU UCAUCUCGAUUGGUGAAG 20 523
BCLllA-72 - UUUUUAUCGAGCACAAA 17 524
BCLllA-41 + UU UUUCAUCUCGAUUGGUGA 20 525
Table ID provides exemplary targeting domains for knocking out the BCL11A gene selected according to fourth tier parameters. The targeting domains are selected based on presence in the coding sequence. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table ID
Figure imgf000114_0001
BCLllA-168 - GCGGUUGAAUCCAAUGGCUA 20 554
BCLllA-169 - GGCUAUGGAGCCUCCCGCCA 20 555
BCLllA-170 - CUCCCGCCAUGGAUUUCUCU 20 556
BCLllA-171 - CUCUAGGAGACUUAGAGAGC 20 557
BCLllA-172 - AGGAGACUUAGAGAGCUGGC 20 558
BCLllA-173 - GGAGACUUAGAGAGCUGGCA 20 559
BCLllA-174 - UCUAGCCCACCGCUGUCCCC 20 560
BCLllA-175 - GCCCACCGCUGUCCCCAGGC 20 561
BCLllA-176 - GCCGGCCCAGCCCUAUGCAA 20 562
BCLllA-177 - UUACUGCAACCAUUCCAGCC 20 563
BCLllA-178 - AGGUAGCAAGCCGCCCUUCC 20 564
BCLllA-179 - CCCUCCUCCCUCCCAGCCCC 20 565
BCLllA-180 - UCCAAGUCAUGCGAGUUCUG 20 566
BCLllA-181 - G U U CAAAU U U CAG AG CAACC 20 567
BCLllA-182 - CAAAUUUCAGAGCAACCUGG 20 568
BCLllA-183 - AGAGCAACCUGGUGGUGCAC 20 569
BCLllA-184 - GGUGCACCGGCGCAGCCACA 20 570
BCLllA-185 - GUGCACCGGCGCAGCCACAC 20 571
BCLllA-186 - GUGCGACCACGCGUGCACCC 20 572
BCLllA-187 - GCACAAAUCGUCCCCCAUGA 20 573
BCLllA-188 - AUGACGGUCAAGUCCGACGA 20 574
BCLllA-189 - UCUCUCCACCGCCAGCUCCC 20 575
BCLllA-190 - ACCGCCAGCUCCCCGGAACC 20 576
BCLllA-191 - GGAACCCGGCACCAGCGACU 20 577
BCLllA-192 - ACCCGGCACCAGCGACUUGG 20 578
BCLllA-193 - CCCGGCACCAGCGACUUGGU 20 579
BCLllA-194 - CAG CAG CG CG C U CAAG U CCG 20 580
BCLllA-195 - CAGCGCGCUCAAGUCCGUGG 20 581
BCLllA-196 - GAACGACCCCAACCUGAUCC 20 582
BCLllA-197 - CCCAACCUGAUCCCGGAGAA 20 583
BCLllA-198 - CCAACCUGAUCCCGGAGAAC 20 584
BCLllA-199 - CAACCUGAUCCCGGAGAACG 20 585
BCLllA-200 - GAUCCCGGAGAACGGGGACG 20 586
BCLllA-201 - CCCGGAGAACGGGGACGAGG 20 587
BCLllA-202 - GAACGGGGACGAGGAGGAAG 20 588
BCLllA-203 - CGGGGACGAGGAGGAAGAGG 20 589
BCLllA-204 - GGAGGAAGAGGAGGACGACG 20 590
BCLllA-205 - AGAGGAGGACGACGAGGAAG 20 591
BCLllA-206 - CGACGAGGAAGAGGAAGAAG 20 592
BCLllA-207 - CGAGGAAGAGGAAGAAGAGG 20 593
BCLllA-208 - AGAGGAAGAAGAGGAGGAAG 20 594
BCLllA-209 - GGAAGAAGAGGAGGAAGAGG 20 595 BCLllA-210 - AGAAGAGGAGGAAGAGGAGG 20 596
BCLllA-211 - AGAGGAGGAAGAGGAGGAGG 20 597
BCLllA-212 + UCCUCCUCGUCCCCGUUCUC 20 598
BCLllA-213 + CCUCCUCGUCCCCGUUCUCC 20 599
BCLllA-214 + CGUCCCCGUUCUCCGGGAUC 20 600
BCLllA-215 + CCCGUUCUCCGGGAUCAGGU 20 601
BCLllA-216 + CCGUUCUCCGGGAUCAGGUU 20 602
BCLllA-217 + CGUUCUCCGGGAUCAGGUUG 20 603
BCLllA-218 + GUCGU UCUCGCUCUUGAACU 20 604
BCLllA-219 + GCUCU UGAACUUGGCCACCA 20 605
BCLllA-220 + CACGGACU UGAGCGCGCUGC 20 606
BCLllA-221 + GGCGCUGCCCACCAAGUCGC 20 607
BCLllA-222 + GCCCACCAAGUCGCUGGUGC 20 608
BCLllA-223 + CCCACCAAGUCGCUGGUGCC 20 609
BCLllA-224 + AAGUCGCUGGUGCCGGGUUC 20 610
BCLllA-225 + AGUCGCUGGUGCCGGGUUCC 20 611
BCLllA-226 + GUCGCUGGUGCCGGGU UCCG 20 612
BCLllA-227 + GGUGCCGGGUUCCGGGGAGC 20 613
BCLllA-228 + GCCGGGUUCCGGGGAGCUGG 20 614
BCLllA-229 + GGGU UCCGGGGAGCUGGCGG 20 615
BCLllA-230 + GGCGGUGGAGAGACCGUCGU 20 616
BCLllA-231 + GUCGUCGGACUUGACCGUCA 20 617
BCLllA-232 + UCGUCGGACUUGACCGUCAU 20 618
BCLllA-233 + CGUCGGACU UGACCGUCAUG 20 619
BCLllA-234 + GUCGGACUUGACCGUCAUGG 20 620
BCLllA-235 + UGUGCAUGUGCGUCUUCAUG 20 621
BCLllA-236 + CAUGUGGCGCUUCAGCUUGC 20 622
BCLllA-237 + GGCGCUUCAGCUUGCUGGCC 20 623
BCLllA-238 + GCGCUUCAGCUUGCUGGCCU 20 624
BCLllA-239 + UGCUGGCCUGGGUGCACGCG 20 625
BCLllA-240 + GGGUGCACGCGUGGUCGCAC 20 626
BCLllA-241 + GUCGCACAGGU UGCACU UGU 20 627
BCLllA-242 + UCGCACAGGUUGCACUUGUA 20 628
BCLllA-243 + UGUAGGGCUUCUCGCCCGUG 20 629
BCLllA-244 + UCUCGCCCGUGUGGCUGCGC 20 630
BCLllA-245 + GGCUGCGCCGGUGCACCACC 20 631
BCLllA-246 + GCCGCAGAACUCGCAUGACU 20 632
BCLllA-247 + UCGCAUGACUUGGACUUGAC 20 633
BCLllA-248 + CGCAUGACUUGGACUUGACC 20 634
BCLllA-249 + GCAUGACUUGGACUUGACCG 20 635
BCLllA-250 + CAUGACUUGGACUUGACCGG 20 636
BCLllA-251 + ACU UGGACUUGACCGGGGGC 20 637 BCLllA-252 + CUUGGACUUGACCGGGGGCU 20 638
BCLllA-253 + GGACUUGACCGGGGGCUGGG 20 639
BCLllA-254 + GACUUGACCGGGGGCUGGGA 20 640
BCLllA-255 + UUGACCGGGGGCUGGGAGGG 20 641
BCLllA-256 + ACCGGGGGCUGGGAGGGAGG 20 642
BCLllA-257 + CCGGGGGCUGGGAGGGAGGA 20 643
BCLllA-258 + CGGGGGCUGGGAGGGAGGAG 20 644
BCLllA-259 + GGGCUGGGAGGGAGGAGGGG 20 645
BCLllA-260 + GGAGGAGGGGCGGAUUGCAG 20 646
BCLllA-261 + GGAGGGGCGGAUUGCAGAGG 20 647
BCLllA-262 + GAGGGGCGGAUUGCAGAGGA 20 648
BCLllA-263 + GGGCGGAUUGCAGAGGAGGG 20 649
BCLllA-264 + GGCGGAUUGCAGAGGAGGGA 20 650
BCLllA-265 + GCGGAUUGCAGAGGAGGGAG 20 651
BCLllA-266 + CGGAU UGCAGAGGAGGGAGG 20 652
BCLllA-267 + GGAUUGCAGAGGAGGGAGGG 20 653
BCLllA-268 + GAUUGCAGAGGAGGGAGGGG 20 654
BCLllA-269 + GAGGGAGGGGGGGCGUCGCC 20 655
BCLllA-270 + GAGGGGGGGCGUCGCCAGGA 20 656
BCLllA-271 + AGGGGGGGCGUCGCCAGGAA 20 657
BCLllA-272 + GGGGGCGUCGCCAGGAAGGG 20 658
BCLllA-273 + AGGAAGGGCGGCUUGCUACC 20 659
BCLllA-274 + AGGGCGGCU UGCUACCUGGC 20 660
BCLllA-275 + GGCUUGCUACCUGGCUGGAA 20 661
BCLllA-276 + GGUUGCAGUAACCUUUGCAU 20 662
BCLllA-277 + GUUGCAGUAACCUUUGCAUA 20 663
BCLllA-278 + CAGUAACCUUUGCAUAGGGC 20 664
BCLllA-279 + AGUAACCUUUGCAUAGGGCU 20 665
BCLllA-280 + ACCUU UGCAUAGGGCUGGGC 20 666
BCLllA-281 + UGCAUAGGGCUGGGCCGGCC 20 667
BCLllA-282 + GCAUAGGGCUGGGCCGGCCU 20 668
BCLllA-283 + CAUAGGGCUGGGCCGGCCUG 20 669
BCLllA-284 + CUGGGCCGGCCUGGGGACAG 20 670
BCLllA-285 + GGCCGGCCUGGGGACAGCGG 20 671
BCLllA-286 + GCCGGCCUGGGGACAGCGGU 20 672
BCLllA-287 + AAGUCUCCUAGAGAAAUCCA 20 673
BCLllA-288 + UCUCCUAGAGAAAUCCAUGG 20 674
BCLllA-289 + CUCCUAGAGAAAUCCAUGGC 20 675
BCLllA-290 + CUAGAGAAAUCCAUGGCGGG 20 676
BCLllA-291 + GCGGGAGGCUCCAUAGCCAU 20 677
BCLllA-292 + CAACCGCAGCACCCUGUCAA 20 678
BCLllA-293 + AGCACCCUG UCAAAGGCACU 20 679 BCLllA-294 + GCACCCUGUCAAAGGCACUC 20 680
BCLllA-295 + UGUCAAAGGCACUCGGGUGA 20 681
BCLllA-296 + GUCAAAGGCACUCGGGUGAU 20 682
BCLllA-297 + AAAGGCACUCGGGUGAUGGG 20 683
BCLllA-298 + CACUCGGGUGAUGGGUGGCC 20 684
BCLllA-299 + ACUCGGGUGAUGGGUGGCCA 20 685
BCLllA-300 + GGGCCAUCUCUUCCGCCCCC 20 686
BCLllA-301 + CCGCCCCCAGGCGCUCUAUG 20 687
BCLllA-302 + CCCCCAGGCGCUCUAUGCGG 20 688
BCLllA-303 + CCCCAGGCGCUCUAUGCGGU 20 689
BCLllA-304 + CCCAGGCGCUCUAUGCGGUG 20 690
BCLllA-305 + CCAGGCGCUCUAUGCGGUGG 20 691
BCLllA-306 + UGGGGGUCCAAGUGAUGUCU 20 692
BCLllA-307 + GGGUCCAAGUGAUGUCUCGG 20 693
BCLllA-308 + UCCAAGUGAUGUCUCGGUGG 20 694
BCLllA-309 + GUCUCGGUGGUGGACUAAAC 20 695
BCLllA-310 + UCUCGGUGGUGGACUAAACA 20 696
BCLllA-311 + CUCGGUGGUGGACUAAACAG 20 697
BCLllA-312 + UCGGUGGUGGACUAAACAGG 20 698
BCLllA-313 + CGGUGGUGGACUAAACAGGG 20 699
BCLllA-314 + GGUGGUGGACUAAACAGGGG 20 700
BCLllA-315 + UGGACUAAACAGGGGGGGAG 20 701
BCLllA-316 + GGACUAAACAGGGGGGGAGU 20 702
BCLllA-317 + CUAAACAGGGGGGGAGUGGG 20 703
BCLllA-318 + GUGGAAAGCGCCCUUCUGCC 20 704
BCLllA-319 + AAAGCGCCCUUCUGCCAGGC 20 705
BCLllA-320 + GCCUCUCUCGAUACUGAUCC 20 706
BCLllA-321 + CUGAUCCUGGUAUUCU UAGC 20 707
BCLllA-322 + UGGUAUUCUUAGCAGGUUAA 20 708
BCLllA-323 + GGUAUUCUUAGCAGGUUAAA 20 709
BCLllA-324 + GUAUUCUUAGCAGGUUAAAG 20 710
BCLllA-325 + UGUCUGCAAUAUGAAUCCCA 20 711
BCLllA-326 + GCAAUAUGAAUCCCAUGGAG 20 712
BCLllA-327 + AUAUGAAUCCCAUGGAGAGG 20 713
BCLllA-328 + GAAUCCCAUGGAGAGGUGGC 20 714
BCLllA-329 + AAUCCCAUGGAGAGGUGGCU 20 715
BCLllA-330 + CCAUGGAGAGGUGGCUGGGA 20 716
BCLllA-331 + CAUUCUGCACCUAGUCCUGA 20 717
BCLllA-332 + AUUCUGCACCUAGUCCUGAA 20 718
BCLllA-333 + CCUGAAGGGAUACCAACCCG 20 719
BCLllA-334 + CUGAAGGGAUACCAACCCGC 20 720
BCLllA-335 + UGAAGGGAUACCAACCCGCG 20 721 BCLllA-336 + GGAUACCAACCCGCGGGGUC 20 722
BCLllA-337 + GAUACCAACCCGCGGGGUCA 20 723
BCLllA-338 + AUACCAACCCGCGGGGUCAG 20 724
BCLllA-339 + UUGCAAGAGAAACCAUGCAC 20 725
BCLllA-340 + AGAAACCAUGCACUGGUGAA 20 726
BCLllA-341 + AGUUGUACAUGUGUAGCUGC 20 727
BCLllA-342 + GUUGUACAUGUGUAGCUGCU 20 728
BCLllA-343 - AGCCAUUCACCAGUGCA 17 729
BCLllA-344 - CACGCACAGAACACUCA 17 730
BCLllA-345 - UACUUAGAAAGCGAACA 17 731
BCLllA-346 - GAAGUCCCCUGACCCCG 17 732
BCLllA-347 - AAGUCCCCUGACCCCGC 17 733
BCLllA-348 - CCCCUGACCCCGCGGGU 17 734
BCLllA-349 - CGGGUUGGUAUCCCUUC 17 735
BCLllA-350 - GGUAUCCCUUCAGGACU 17 736
BCLllA-351 - UCCCAGCCACCUCUCCA 17 737
BCLllA-352 - CCCAGCCACCUCUCCAU 17 738
BCLllA-353 - AACCUGCUAAGAAUACC 17 739
BCLllA-354 - AGGAUCAGUAUCGAGAG 17 740
BCLllA-355 - GUAUCGAGAGAGGCUUC 17 741
BCLllA-356 - GAGAGAGGCUUCCGGCC 17 742
BCLllA-357 - GCUUCCGGCCUGGCAGA 17 743
BCLllA-358 - CUUCCGGCCUGGCAGAA 17 744
BCLllA-359 - ACCACCGAGACAUCACU 17 745
BCLllA-360 - CCACCGCAUAGAGCGCC 17 746
BCLllA-361 - CACCGCAUAGAGCGCCU 17 747
BCLllA-362 - ACCGCAUAGAGCGCCUG 17 748
BCLllA-363 - CCGCAUAGAGCGCCUGG 17 749
BCLllA-364 - CAUAGAGCGCCUGGGGG 17 750
BCLllA-365 - CCUGGGGGCGGAAGAGA 17 751
BCLllA-366 - GGCGGAAGAGAUGGCCC 17 752
BCLllA-367 - ACCCGAGUGCCUUUGAC 17 753
BCLllA-368 - CCCGAGUGCCUUUGACA 17 754
BCLllA-369 - CCUUUGACAGGGUGCUG 17 755
BCLllA-370 - GCUGCGGUUGAAUCCAA 17 756
BCLllA-371 - GUUGAAUCCAAUGGCUA 17 757
BCLllA-372 - UAUGGAGCCUCCCGCCA 17 758
BCLllA-373 - CCGCCAUGGAUUUCUCU 17 759
BCLllA-374 - UAGGAGACUUAGAGAGC 17 760
BCLllA-375 - AGACUUAGAGAGCUGGC 17 761
BCLllA-376 - GACUUAGAGAGCUGGCA 17 762
BCLllA-377 - AGCCCACCGCUGUCCCC 17 763 BCLllA-378 - CACCGCUGUCCCCAGGC 17 764
BCLllA-379 - GGCCCAGCCCUAUGCAA 17 765
BCLllA-380 - CUGCAACCAUUCCAGCC 17 766
BCLllA-381 - UAGCAAGCCGCCCUUCC 17 767
BCLllA-382 - UCCUCCCUCCCAGCCCC 17 768
BCLllA-383 - AAGUCAUGCGAGUUCUG 17 769
BCLllA-384 - CAAAU U U CAG AGCAACC 17 770
BCLllA-385 - AUUUCAGAGCAACCUGG 17 771
BCLllA-386 - GCAACCUGGUGGUGCAC 17 772
BCLllA-387 - GCACCGGCGCAGCCACA 17 773
BCLllA-388 - CACCGGCGCAGCCACAC 17 774
BCLllA-389 - CGACCACGCGUGCACCC 17 775
BCLllA-390 - CAAAUCGUCCCCCAUGA 17 776
BCLllA-391 - ACGGUCAAGUCCGACGA 17 111
BCLllA-392 - CUCCACCGCCAGCUCCC 17 778
BCLllA-393 - GCCAGCUCCCCGGAACC 17 779
BCLllA-394 - ACCCGGCACCAGCGACU 17 780
BCLllA-395 - CGGCACCAGCGACUUGG 17 781
BCLllA-396 - GGCACCAGCGACUUGGU 17 782
BCLllA-397 - CAGCGCGCUCAAGUCCG 17 783
BCLllA-398 - CGCGCUCAAGUCCGUGG 17 784
BCLllA-399 - CGACCCCAACCUGAUCC 17 785
BCLllA-400 - AACCUGAUCCCGGAGAA 17 786
BCLllA-401 - ACCUGAUCCCGGAGAAC 17 787
BCLllA-402 - CCUGAUCCCGGAGAACG 17 788
BCLllA-403 - CCCGGAGAACGGGGACG 17 789
BCLllA-404 - GGAGAACGGGGACGAGG 17 790
BCLllA-405 - CGGGGACGAGGAGGAAG 17 791
BCLllA-406 - GGACGAGGAGGAAGAGG 17 792
BCLllA-407 - GGAAGAGGAGGACGACG 17 793
BCLllA-408 - GGAGGACGACGAGGAAG 17 794
BCLllA-409 - CGAGGAAGAGGAAGAAG 17 795
BCLllA-410 - GGAAGAGGAAGAAGAGG 17 796
BCLllA-411 - GGAAGAAGAGGAGGAAG 17 797
BCLllA-412 - AGAAGAGGAGGAAGAGG 17 798
BCLllA-413 - AGAGGAGGAAGAGGAGG 17 799
BCLllA-414 - GGAGGAAGAGGAGGAGG 17 800
BCLllA-415 + UCCUCGUCCCCGUUCUC 17 801
BCLllA-416 + CCUCGUCCCCGUUCUCC 17 802
BCLllA-417 + CCCCGUUCUCCGGGAUC 17 803
BCLllA-418 + GUUCUCCGGGAUCAGGU 17 804
BCLllA-419 + UUCUCCGGGAUCAGGUU 17 805 BCLllA-420 + UCUCCGGGAUCAGGUUG 17 806
BCLllA-421 + GU UCUCGCUCUUGAACU 17 807
BCLllA-422 + CUUGAACUUGGCCACCA 17 808
BCLllA-423 + GGACUUGAGCGCGCUGC 17 809
BCLllA-424 + GCUGCCCACCAAGUCGC 17 810
BCLllA-425 + CACCAAGUCGCUGGUGC 17 811
BCLllA-426 + ACCAAGUCGCUGGUGCC 17 812
BCLllA-427 + UCGCUGGUGCCGGGUUC 17 813
BCLllA-428 + CGCUGGUGCCGGGU UCC 17 814
BCLllA-429 + GCUGGUGCCGGGUUCCG 17 815
BCLllA-430 + GCCGGGUUCCGGGGAGC 17 816
BCLllA-431 + GGGU UCCGGGGAGCUGG 17 817
BCLllA-432 + U UCCGGGGAGCUGGCGG 17 818
BCLllA-433 + GGUGGAGAGACCGUCGU 17 819
BCLllA-434 + GUCGGACUUGACCGUCA 17 820
BCLllA-435 + UCGGACUUGACCGUCAU 17 821
BCLllA-436 + CGGACU UGACCGUCAUG 17 822
BCLllA-437 + GGACU UGACCGUCAUGG 17 823
BCLllA-438 + GCAUGUGCGUCUUCAUG 17 824
BCLllA-439 + GUGGCGCU UCAGCUUGC 17 825
BCLllA-440 + GCUUCAGCUUGCUGGCC 17 826
BCLllA-441 + CUUCAGCUUGCUGGCCU 17 827
BCLllA-442 + UGGCCUGGGUGCACGCG 17 828
BCLllA-443 + UGCACGCGUGGUCGCAC 17 829
BCLllA-444 + GCACAGGUUGCACUUGU 17 830
BCLllA-445 + CACAGGUUGCACUUGUA 17 831
BCLllA-446 + AGGGCUUCUCGCCCGUG 17 832
BCLllA-447 + CGCCCGUGUGGCUGCGC 17 833
BCLllA-448 + UGCGCCGGUGCACCACC 17 834
BCLllA-449 + GCAGAACUCGCAUGACU 17 835
BCLllA-450 + CAUGACUUGGACUUGAC 17 836
BCLllA-451 + AUGACUUGGACUUGACC 17 837
BCLllA-452 + UGACUUGGACUUGACCG 17 838
BCLllA-453 + GACUUGGACUUGACCGG 17 839
BCLllA-454 + UGGACUUGACCGGGGGC 17 840
BCLllA-455 + GGACU UGACCGGGGGCU 17 841
BCLllA-456 + CUUGACCGGGGGCUGGG 17 842
BCLllA-457 + U UGACCGGGGGCUGGGA 17 843
BCLllA-458 + ACCGGGGGCUGGGAGGG 17 844
BCLllA-459 + GGGGGCUGGGAGGGAGG 17 845
BCLllA-460 + GGGGCUGGGAGGGAGGA 17 846
BCLllA-461 + GGGCUGGGAGGGAGGAG 17 847 BCLllA-462 + CUGGGAGGGAGGAGGGG 17 848
BCLllA-463 + GGAGGGGCGGAUUGCAG 17 849
BCLllA-464 + GGGGCGGAUUGCAGAGG 17 850
BCLllA-465 + GGGCGGAUUGCAGAGGA 17 851
BCLllA-466 + CGGAU UGCAGAGGAGGG 17 852
BCLllA-467 + GGAUUGCAGAGGAGGGA 17 853
BCLllA-468 + GAUUGCAGAGGAGGGAG 17 854
BCLllA-469 + AUUGCAGAGGAGGGAGG 17 855
BCLllA-470 + U UGCAGAGGAGGGAGGG 17 856
BCLllA-471 + UGCAGAGGAGGGAGGGG 17 857
BCLllA-472 + GGAGGGGGGGCGUCGCC 17 858
BCLllA-473 + GGGGGGCGUCGCCAGGA 17 859
BCLllA-474 + GGGGGCGUCGCCAGGAA 17 860
BCLllA-475 + GGCGUCGCCAGGAAGGG 17 861
BCLllA-476 + AAGGGCGGCUUGCUACC 17 862
BCLllA-477 + GCGGCUUGCUACCUGGC 17 863
BCLllA-478 + U UGCUACCUGGCUGGAA 17 864
BCLllA-479 + UGCAGUAACCUU UGCAU 17 865
BCLllA-480 + GCAGUAACCUUUGCAUA 17 866
BCLllA-481 + UAACCUUUGCAUAGGGC 17 867
BCLllA-482 + AACCUUUGCAUAGGGCU 17 868
BCLllA-483 + UUUGCAUAGGGCUGGGC 17 869
BCLllA-484 + AUAGGGCUGGGCCGGCC 17 870
BCLllA-485 + UAGGGCUGGGCCGGCCU 17 871
BCLllA-486 + AGGGCUGGGCCGGCCUG 17 872
BCLllA-487 + GGCCGGCCUGGGGACAG 17 873
BCLllA-488 + CGGCCUGGGGACAGCGG 17 874
BCLllA-489 + GGCCUGGGGACAGCGGU 17 875
BCLllA-490 + UCUCCUAGAGAAAUCCA 17 876
BCLllA-491 + CCUAGAGAAAUCCAUGG 17 877
BCLllA-492 + CUAGAGAAAUCCAUGGC 17 878
BCLllA-493 + GAGAAAUCCAUGGCGGG 17 879
BCLllA-494 + GGAGGCUCCAUAGCCAU 17 880
BCLllA-495 + CCGCAGCACCCUGUCAA 17 881
BCLllA-496 + ACCCUGUCAAAGGCACU 17 882
BCLllA-497 + CCCUGUCAAAGGCACUC 17 883
BCLllA-498 + CAAAGGCACUCGGGUGA 17 884
BCLllA-499 + AAAGGCACUCGGGUGAU 17 885
BCLllA-500 + GGCACUCGGGUGAUGGG 17 886
BCLllA-501 + UCGGGUGAUGGGUGGCC 17 887
BCLllA-502 + CGGGUGAUGGGUGGCCA 17 888
BCLllA-503 + CCAUCUCUUCCGCCCCC 17 889 BCLllA-504 + CCCCCAGGCGCUCUAUG 17 890
BCLllA-505 + CCAGGCGCUCUAUGCGG 17 891
BCLllA-506 + CAGGCGCUCUAUGCGGU 17 892
BCLllA-507 + AGGCGCUCUAUGCGGUG 17 893
BCLllA-508 + GGCGCUCUAUGCGGUGG 17 894
BCLllA-509 + GGGUCCAAGUGAUGUCU 17 895
BCLllA-510 + UCCAAGUGAUGUCUCGG 17 896
BCLllA-511 + AAGUGAUGUCUCGGUGG 17 897
BCLllA-512 + UCGGUGGUGGACUAAAC 17 898
BCLllA-513 + CGGUGGUGGACUAAACA 17 899
BCLllA-514 + GGUGGUGGACUAAACAG 17 900
BCLllA-515 + GUGGUGGACUAAACAGG 17 901
BCLllA-516 + UGGUGGACUAAACAGGG 17 902
BCLllA-517 + GGUGGACUAAACAGGGG 17 903
BCLllA-518 + ACUAAACAGGGGGGGAG 17 904
BCLllA-519 + CUAAACAGGGGGGGAGU 17 905
BCLllA-520 + AACAGGGGGGGAGUGGG 17 906
BCLllA-521 + GAAAGCGCCCUUCUGCC 17 907
BCLllA-522 + GCGCCCUUCUGCCAGGC 17 908
BCLllA-523 + UCUCUCGAUACUGAUCC 17 909
BCLllA-524 + AUCCUGGUAUUCUUAGC 17 910
BCLllA-525 + UAUUCUUAGCAGGUUAA 17 911
BCLllA-526 + AUUCUUAGCAGGU UAAA 17 912
BCLllA-527 + UUCUUAGCAGGUUAAAG 17 913
BCLllA-528 + CUGCAAUAUGAAUCCCA 17 914
BCLllA-529 + AUAUGAAUCCCAUGGAG 17 915
BCLllA-530 + UGAAUCCCAUGGAGAGG 17 916
BCLllA-531 + UCCCAUGGAGAGGUGGC 17 917
BCLllA-532 + CCCAUGGAGAGGUGGCU 17 918
BCLllA-533 + UGGAGAGGUGGCUGGGA 17 919
BCLllA-534 + UCUGCACCUAGUCCUGA 17 920
BCLllA-535 + CUGCACCUAGUCCUGAA 17 921
BCLllA-536 + GAAGGGAUACCAACCCG 17 922
BCLllA-537 + AAGGGAUACCAACCCGC 17 923
BCLllA-538 + AGGGAUACCAACCCGCG 17 924
BCLllA-539 + UACCAACCCGCGGGGUC 17 925
BCLllA-540 + ACCAACCCGCGGGGUCA 17 926
BCLllA-541 + CCAACCCGCGGGGUCAG 17 927
BCLllA-542 + CAAGAGAAACCAUGCAC 17 928
BCLllA-543 + AACCAUGCACUGGUGAA 17 929
BCLllA-544 + UGUACAUGUGUAGCUGC 17 930
BCLllA-545 + GUACAUGUGUAGCUGCU 17 931 BCLllA-546 - AGAGGAGGAGGAGGAGCUGA 20 932
BCLllA-547 - AGGAGCUGACGGAGAGCGAG 20 933
BCLllA-548 - GGAGCUGACGGAGAGCGAGA 20 934
BCLllA-549 - GCUGACGGAGAGCGAGAGGG 20 935
BCLllA-550 - GAGAGCGAGAGGGUGGACUA 20 936
BCLllA-551 - GAGAGGGUGGACUACGGCUU 20 937
BCLllA-552 - AGAGGGUGGACUACGGCUUC 20 938
BCLllA-553 - CUACGGCUUCGGGCUGAGCC 20 939
BCLllA-554 - CGGCUUCGGGCUGAGCCUGG 20 940
BCLllA-555 - CUUCGGGCUGAGCCUGGAGG 20 941
BCLllA-556 - GCCACCACGAGAACAGCUCG 20 942
BCLllA-557 - CCACCACGAGAACAGCUCGC 20 943
BCLllA-558 - CACCACGAGAACAGCUCGCG 20 944
BCLllA-559 - CGAGAACAGCUCGCGGGGCG 20 945
BCLllA-560 - CAGCUCGCGGGGCGCGGUCG 20 946
BCLllA-561 - AGCUCGCGGGGCGCGGUCGU 20 947
BCLllA-562 - GCGGGGCGCGGUCGUGGGCG 20 948
BCLllA-563 - CGGGGCGCGGUCGUGGGCGU 20 949
BCLllA-564 - CGCCCUGCCCGACGUCAUGC 20 950
BCLllA-565 - GCCCUGCCCGACGUCAUGCA 20 951
BCLllA-566 - GCCCGACGUCAUGCAGGGCA 20 952
BCLllA-567 - CUCCAUGCAGCACUUCAGCG 20 953
BCLllA-568 - CUUCAGCGAGGCCUUCCACC 20 954
BCLllA-569 - CGAGGCCUUCCACCAGGUCC 20 955
BCLllA-570 - GAGGCCUUCCACCAGGUCCU 20 956
BCLllA-571 - CUGGGCGAGAAGCAUAAGCG 20 957
BCLllA-572 - GAAGCAUAAGCGCGGCCACC 20 958
BCLllA-573 - UAAGCGCGGCCACCUGGCCG 20 959
BCLllA-574 - CGGCCACCUGGCCGAGGCCG 20 960
BCLllA-575 - GGCCACCUGGCCGAGGCCGA 20 961
BCLllA-576 - UGGCCGAGGCCGAGGGCCAC 20 962
BCLllA-577 - GGCCGAGGCCGAGGGCCACA 20 963
BCLllA-578 - GGACACUUGCGACGAAGACU 20 964
BCLllA-579 - CACUUGCGACGAAGACUCGG 20 965
BCLllA-580 - UGCGACGAAGACUCGGUGGC 20 966
BCLllA-581 - AGACUCGGUGGCCGGCGAGU 20 967
BCLllA-582 - GAGUCGGACCGCAUAGACGA 20 968
BCLllA-583 - AUAGACGAUGGCACUGUUAA 20 969
BCLllA-584 - GAUGGCACUGUUAAUGGCCG 20 970
BCLllA-585 - UAAUGGCCGCGGCUGCUCCC 20 971
BCLllA-586 - AAUGGCCGCGGCUGCUCCCC 20 972
BCLllA-587 - CGGCUGCUCCCCGGGCGAGU 20 973 BCLllA-588 - CUCCCCGGGCGAGUCGGCCU 20 974
BCLllA-589 - UCCCCGGGCGAGUCGGCCUC 20 975
BCLllA-590 - CCCCGGGCGAGUCGGCCUCG 20 976
BCLllA-591 - CCCGGGCGAGUCGGCCUCGG 20 977
BCLllA-592 - CCGGGCGAGUCGGCCUCGGG 20 978
BCLllA-593 - CCUGUCCAAAAAGCUGCUGC 20 979
BCLllA-594 - CUGUCCAAAAAGCUGCUGCU 20 980
BCLllA-595 - UAAGCGCAUCAAGCUCGAGA 20 981
BCLllA-596 - GAAGGAGUUCGACCUGCCCC 20 982
BCLllA-597 - CCCGGCCGCGAUGCCCAACA 20 983
BCLllA-598 - CGGAGAACGUGUACUCGCAG 20 984
BCLllA-599 - GUGUACUCGCAGUGGCUCGC 20 985
BCLllA-600 - GCAGUGGCUCGCCGGCUACG 20 986
BCLllA-601 - UCGCCGGCUACGCGGCCUCC 20 987
BCLllA-602 - AAAGAUCCCUUCCUUAGCUU 20 988
BCLllA-603 - AUCGCCUUUUGCCUCCUCGU 20 989
BCLllA-604 - CUCCUCGUCGGAGCACUCCU 20 990
BCLllA-605 - UCGGAGCACUCCUCGGAGAA 20 991
BCLllA-606 - CGGAGCACUCCUCGGAGAAC 20 992
BCLllA-607 - UUGCGCUUCUCCACACCGCC 20 993
BCLllA-608 - UGCGCUUCUCCACACCGCCC 20 994
BCLllA-609 - GCGCUUCUCCACACCGCCCG 20 995
BCLllA-610 - CUCCACACCGCCCGGGGAGC 20 996
BCLllA-611 - ACACCGCCCGGGGAGCUGGA 20 997
BCLllA-612 - CCGCCCGGGGAGCUGGACGG 20 998
BCLllA-613 - CGCCCGGGGAGCUGGACGGA 20 999
BCLllA-614 - GGAGCUGGACGGAGGGAUCU 20 1000
BCLllA-615 - GAGCUGGACGGAGGGAUCUC 20 1001
BCLllA-616 - AGCUGGACGGAGGGAUCUCG 20 1002
BCLllA-617 - GGAGGGAUCUCGGGGCGCAG 20 1003
BCLllA-618 - GAUCUCGGGGCGCAGCGGCA 20 1004
BCLllA-619 - AUCUCGGGGCGCAGCGGCAC 20 1005
BCLllA-620 - GGGCGCAGCGGCACGGGAAG 20 1006
BCLllA-621 - CGCAGCGGCACGGGAAGUGG 20 1007
BCLllA-622 - GCAGCGGCACGGGAAGUGGA 20 1008
BCLllA-623 - GGGAGCACGCCCCAUAUUAG 20 1009
BCLllA-624 - CACGCCCCAUAUUAGUGGUC 20 1010
BCLllA-625 - ACGCCCCAUAUUAGUGGUCC 20 1011
BCLllA-626 - CCAUAUUAGUGGUCCGGGCC 20 1012
BCLllA-627 - CAUAUUAGUGGUCCGGGCCC 20 1013
BCLllA-628 - UUAGUGGUCCGGGCCCGGGC 20 1014
BCLllA-629 - GGGCAGGCCCAGCUCAAAAG 20 1015 BCLllA-630 - GGCAGGCCCAGCUCAAAAGA 20 1016
BCLllA-631 + GCGUCUGCCCUCUUUUGAGC 20 1017
BCLllA-632 + CGUCUGCCCUCUUUUGAGCU 20 1018
BCLllA-633 + UCU UUUGAGCUGGGCCUGCC 20 1019
BCLllA-634 + CUUUUGAGCUGGGCCUGCCC 20 1020
BCLllA-635 + GAGCUGGGCCUGCCCGGGCC 20 1021
BCLllA-636 + CCGGGCCCGGACCACUAAUA 20 1022
BCLllA-637 + CGGGCCCGGACCACUAAUAU 20 1023
BCLllA-638 + GGGCCCGGACCACUAAUAUG 20 1024
BCLllA-639 + GAUCCCUCCGUCCAGCUCCC 20 1025
BCLllA-640 + AUCCCUCCGUCCAGCUCCCC 20 1026
BCLllA-641 + CCUCCGUCCAGCUCCCCGGG 20 1027
BCLllA-642 + GUCCAGCUCCCCGGGCGGUG 20 1028
BCLllA-643 + GCGCAAACUCCCGU UCUCCG 20 1029
BCLllA-644 + CUCCGAGGAGUGCUCCGACG 20 1030
BCLllA-645 + CGAGGAGUGCUCCGACGAGG 20 1031
BCLllA-646 + UGCUCCGACGAGGAGGCAAA 20 1032
BCLllA-647 + GGAGGCAAAAGGCGAUUGUC 20 1033
BCLllA-648 + GUCUGGAGUCUCCGAAGCUA 20 1034
BCLllA-649 + GGAGUCUCCGAAGCUAAGGA 20 1035
BCLllA-650 + GAGUCUCCGAAGCUAAGGAA 20 1036
BCLllA-651 + GAAGGGAUCUUUGAGCUGCC 20 1037
BCLllA-652 + GGGAUCUUUGAGCUGCCUGG 20 1038
BCLllA-653 + CUGCCUGGAGGCCGCGUAGC 20 1039
BCLllA-654 + CGAGUACACGUUCUCCGUGU 20 1040
BCLllA-655 + GAGUACACGUUCUCCGUGUU 20 1041
BCLllA-656 + GUUCUCCGUGUUGGGCAUCG 20 1042
BCLllA-657 + UCCGUGUUGGGCAUCGCGGC 20 1043
BCLllA-658 + CCGUGUUGGGCAUCGCGGCC 20 1044
BCLllA-659 + CGUGU UGGGCAUCGCGGCCG 20 1045
BCLllA-660 + GUGUUGGGCAUCGCGGCCGG 20 1046
BCLllA-661 + UGGGCAUCGCGGCCGGGGGC 20 1047
BCLllA-662 + GAGCUUGAUGCGCUUAGAGA 20 1048
BCLllA-663 + AGCU UGAUGCGCUUAGAGAA 20 1049
BCLllA-664 + GCUUGAUGCGCUUAGAGAAG 20 1050
BCLllA-665 + AGAGAAGGGGCUCAGCGAGC 20 1051
BCLllA-666 + GAGAAGGGGCUCAGCGAGCU 20 1052
BCLllA-667 + AGAAGGGGCUCAGCGAGCUG 20 1053
BCLllA-668 + GCUGCCCAGCAGCAGCU UUU 20 1054
BCLllA-669 + CCAGCAGCAGCUUUUUGGAC 20 1055
BCLllA-670 + CUUUUUGGACAGGCCCCCCG 20 1056
BCLllA-671 + CCCCCCGAGGCCGACUCGCC 20 1057 BCLllA-672 + CCCCCGAGGCCGACUCGCCC 20 1058
BCLllA-673 + CCCCGAGGCCGACUCGCCCG 20 1059
BCLllA-674 + ACUCGCCCGGGGAGCAGCCG 20 1060
BCLllA-675 + UAACAGUGCCAUCGUCUAUG 20 1061
BCLllA-676 + GUCUAUGCGGUCCGACUCGC 20 1062
BCLllA-677 + CUUCGUCGCAAGUGUCCCUG 20 1063
BCLllA-678 + GCAAGUGUCCCUGUGGCCCU 20 1064
BCLllA-679 + GUCCCUGUGGCCCUCGGCCU 20 1065
BCLllA-680 + UGUGGCCCUCGGCCUCGGCC 20 1066
BCLllA-681 + GGCCCUCGGCCUCGGCCAGG 20 1067
BCLllA-682 + CGCGCUUAUGCUUCUCGCCC 20 1068
BCLllA-683 + UAUGCUUCUCGCCCAGGACC 20 1069
BCLllA-684 + GCUUCUCGCCCAGGACCUGG 20 1070
BCLllA-685 + CUCGCCCAGGACCUGGUGGA 20 1071
BCLllA-686 + GGCCUCGCUGAAGUGCUGCA 20 1072
BCLllA-687 + CACCAUGCCCUGCAUGACGU 20 1073
BCLllA-688 + ACCAUGCCCUGCAUGACGUC 20 1074
BCLllA-689 + UGCCCUGCAUGACGUCGGGC 20 1075
BCLllA-690 + GCCCUGCAUGACGUCGGGCA 20 1076
BCLllA-691 + GCAUGACGUCGGGCAGGGCG 20 1077
BCLllA-692 + CGCCCCGCGAGCUGUUCUCG 20 1078
BCLllA-693 + CCCGCGAGCUGUUCUCGUGG 20 1079
BCLllA-694 + CGUGGUGGCGCGCCGCCUCC 20 1080
BCLllA-695 - GGAGGAAGAGGAGGAGG 17 1081
BCLllA-696 - GGAGGAGGAGGAGCUGA 17 1082
BCLllA-697 - AGCUGACGGAGAGCGAG 17 1083
BCLllA-698 - GCUGACGGAGAGCGAGA 17 1084
BCLllA-699 - GACGGAGAGCGAGAGGG 17 1085
BCLllA-700 - AGCGAGAGGGUGGACUA 17 1086
BCLllA-701 - AGGGUGGACUACGGCU U 17 1087
BCLllA-702 - GGGUGGACUACGGCUUC 17 1088
BCLllA-703 - CGGCUUCGGGCUGAGCC 17 1089
BCLllA-704 - CUUCGGGCUGAGCCUGG 17 1090
BCLllA-705 - CGGGCUGAGCCUGGAGG 17 1091
BCLllA-706 - ACCACGAGAACAGCUCG 17 1092
BCLllA-707 - CCACGAGAACAGCUCGC 17 1093
BCLllA-708 - CACGAGAACAGCUCGCG 17 1094
BCLllA-709 - GAACAGCUCGCGGGGCG 17 1095
BCLllA-710 - CUCGCGGGGCGCGGUCG 17 1096
BCLllA-711 - UCGCGGGGCGCGGUCGU 17 1097
BCLllA-712 - GGGCGCGGUCGUGGGCG 17 1098
BCLllA-713 - GGCGCGGUCGUGGGCGU 17 1099 BCLllA-714 - CCUGCCCGACGUCAUGC 17 1100
BCLllA-715 - CUGCCCGACGUCAUGCA 17 1101
BCLllA-716 - CGACGUCAUGCAGGGCA 17 1102
BCLllA-717 - C AU G CAG CAC U U C AG CG 17 1103
BCLllA-718 - CAGCGAGGCCUUCCACC 17 1104
BCLllA-719 - GGCCUUCCACCAGGUCC 17 1105
BCLllA-720 - GCCUUCCACCAGGUCCU 17 1106
BCLllA-721 - GGCGAGAAGCAUAAGCG 17 1107
BCLllA-722 - GCAUAAGCGCGGCCACC 17 1108
BCLllA-723 - GCGCGGCCACCUGGCCG 17 1109
BCLllA-724 - CCACCUGGCCGAGGCCG 17 1110
BCLllA-725 - CACCUGGCCGAGGCCGA 17 1111
BCLllA-726 - CCGAGGCCGAGGGCCAC 17 1112
BCLllA-727 - CGAGGCCGAGGGCCACA 17 1113
BCLllA-728 - CACUUGCGACGAAGACU 17 1114
BCLllA-729 - UUGCGACGAAGACUCGG 17 1115
BCLllA-730 - GACGAAGACUCGGUGGC 17 1116
BCLllA-731 - CUCGGUGGCCGGCGAGU 17 1117
BCLllA-732 - UCGGACCGCAUAGACGA 17 1118
BCLllA-733 - GACGAUGGCACUGUUAA 17 1119
BCLllA-734 - GGCACUGUUAAUGGCCG 17 1120
BCLllA-735 - UGGCCGCGGCUGCUCCC 17 1121
BCLllA-736 - GGCCGCGGCUGCUCCCC 17 1122
BCLllA-737 - CUGCUCCCCGGGCGAGU 17 1123
BCLllA-738 - CCCGGGCGAGUCGGCCU 17 1124
BCLllA-739 - CCGGGCGAGUCGGCCUC 17 1125
BCLllA-740 - CGGGCGAGUCGGCCUCG 17 1126
BCLllA-741 - GGGCGAGUCGGCCUCGG 17 1127
BCLllA-742 - GGCGAGUCGGCCUCGGG 17 1128
BCLllA-743 - GUCCAAAAAGCUGCUGC 17 1129
BCLllA-744 - UCCAAAAAGCUGCUGCU 17 1130
BCLllA-745 - GCGCAUCAAGCUCGAGA 17 1131
BCLllA-746 - GGAGUUCGACCUGCCCC 17 1132
BCLllA-747 - GGCCGCGAUGCCCAACA 17 1133
BCLllA-748 - AGAACGUGUACUCGCAG 17 1134
BCLllA-749 - UACUCGCAGUGGCUCGC 17 1135
BCLllA-750 - GUGGCUCGCCGGCUACG 17 1136
BCLllA-751 - CCGGCUACGCGGCCUCC 17 1137
BCLllA-752 - GAUCCCUUCCUUAGCUU 17 1138
BCLllA-753 - GCCUUUUGCCUCCUCGU 17 1139
BCLllA-754 - CUCGUCGGAGCACUCCU 17 1140
BCLllA-755 - GAGCACUCCUCGGAGAA 17 1141 BCLllA-756 - AG CACU CCU CGG AG AAC 17 1142
BCLllA-757 - CGCUUCUCCACACCGCC 17 1143
BCLllA-758 - GCUUCUCCACACCGCCC 17 1144
BCLllA-759 - CUUCUCCACACCGCCCG 17 1145
BCLllA-760 - CACACCGCCCGGGGAGC 17 1146
BCLllA-761 - CCGCCCGGGGAGCUGGA 17 1147
BCLllA-762 - CCCGGGGAGCUGGACGG 17 1148
BCLllA-763 - CCGGGGAGCUGGACGGA 17 1149
BCLllA-764 - GCUGGACGGAGGGAUCU 17 1150
BCLllA-765 - CUGGACGGAGGGAUCUC 17 1151
BCLllA-766 - UGGACGGAGGGAUCUCG 17 1152
BCLllA-767 - GGGAUCUCGGGGCGCAG 17 1153
BCLllA-768 - CUCGGGGCGCAGCGGCA 17 1154
BCLllA-769 - UCGGGGCGCAGCGGCAC 17 1155
BCLllA-770 - CGCAGCGGCACGGGAAG 17 1156
BCLllA-771 - AGCGGCACGGGAAGUGG 17 1157
BCLllA-772 - GCGGCACGGGAAGUGGA 17 1158
BCLllA-773 - AGCACGCCCCAUAUUAG 17 1159
BCLllA-774 - GCCCCAUAU UAGUGGUC 17 1160
BCLllA-775 - CCCCAUAU UAGUGGUCC 17 1161
BCLllA-776 - UAUUAGUGGUCCGGGCC 17 1162
BCLllA-777 - AUUAGUGGUCCGGGCCC 17 1163
BCLllA-778 - GUGGUCCGGGCCCGGGC 17 1164
BCLllA-779 - CAGG CCCAG CU CAAAAG 17 1165
BCLllA-780 - AG G CCCAG C U CAAAAG A 17 1166
BCLllA-781 + UCUGCCCUCU UUUGAGC 17 1167
BCLllA-782 + CUGCCCUCUU UUGAGCU 17 1168
BCLllA-783 + U UUGAGCUGGGCCUGCC 17 1169
BCLllA-784 + UUGAGCUGGGCCUGCCC 17 1170
BCLllA-785 + CUGGGCCUGCCCGGGCC 17 1171
BCLllA-786 + GGCCCGGACCACUAAUA 17 1172
BCLllA-787 + GCCCGGACCACUAAUAU 17 1173
BCLllA-788 + CCCGGACCACUAAUAUG 17 1174
BCLllA-789 + CCCUCCGUCCAGCUCCC 17 1175
BCLllA-790 + CCUCCGUCCAGCUCCCC 17 1176
BCLllA-791 + CCGUCCAGCUCCCCGGG 17 1177
BCLllA-792 + CAGCUCCCCGGGCGGUG 17 1178
BCLllA-793 + CAAACUCCCGUUCUCCG 17 1179
BCLllA-794 + CGAGGAGUGCUCCGACG 17 1180
BCLllA-795 + GGAGUGCUCCGACGAGG 17 1181
BCLllA-796 + UCCGACGAGGAGGCAAA 17 1182
BCLllA-797 + GGCAAAAGGCGAUUGUC 17 1183 BCLllA-798 + UGGAGUCUCCGAAGCUA 17 1184
BCLllA-799 + GUCUCCGAAGCUAAGGA 17 1185
BCLllA-800 + UCUCCGAAGCUAAGGAA 17 1186
BCLllA-801 + GGGAUCUUUGAGCUGCC 17 1187
BCLllA-802 + AUCUUUGAGCUGCCUGG 17 1188
BCLllA-803 + CCUGGAGGCCGCGUAGC 17 1189
BCLllA-804 + GUACACGUUCUCCGUGU 17 1190
BCLllA-805 + UACACGUUCUCCGUGUU 17 1191
BCLllA-806 + CUCCGUGU UGGGCAUCG 17 1192
BCLllA-807 + GUGUUGGGCAUCGCGGC 17 1193
BCLllA-808 + UGUUGGGCAUCGCGGCC 17 1194
BCLllA-809 + GU UGGGCAUCGCGGCCG 17 1195
BCLllA-810 + UUGGGCAUCGCGGCCGG 17 1196
BCLllA-811 + GCAUCGCGGCCGGGGGC 17 1197
BCLllA-812 + CUUGAUGCGCUUAGAGA 17 1198
BCLllA-813 + U UGAUGCGCU UAGAGAA 17 1199
BCLllA-814 + UGAUGCGCUUAGAGAAG 17 1200
BCLllA-815 + GAAGGGGCUCAGCGAGC 17 1201
BCLllA-816 + AAGGGGCUCAGCGAGCU 17 1202
BCLllA-817 + AGGGGCUCAGCGAGCUG 17 1203
BCLllA-818 + GCCCAGCAGCAGCUUU U 17 1204
BCLllA-819 + GCAGCAGCU UUUUGGAC 17 1205
BCLllA-820 + UUUGGACAGGCCCCCCG 17 1206
BCLllA-821 + CCCGAGGCCGACUCGCC 17 1207
BCLllA-822 + CCGAGGCCGACUCGCCC 17 1208
BCLllA-823 + CGAGGCCGACUCGCCCG 17 1209
BCLllA-824 + CGCCCGGGGAGCAGCCG 17 1210
BCLllA-825 + CAGUGCCAUCGUCUAUG 17 1211
BCLllA-826 + UAUGCGGUCCGACUCGC 17 1212
BCLllA-827 + CGUCGCAAGUGUCCCUG 17 1213
BCLllA-828 + AGUGUCCCUGUGGCCCU 17 1214
BCLllA-829 + CCUGUGGCCCUCGGCCU 17 1215
BCLllA-830 + GGCCCUCGGCCUCGGCC 17 1216
BCLllA-831 + CCUCGGCCUCGGCCAGG 17 1217
BCLllA-832 + GCUUAUGCU UCUCGCCC 17 1218
BCLllA-833 + GCUUCUCGCCCAGGACC 17 1219
BCLllA-834 + UCUCGCCCAGGACCUGG 17 1220
BCLllA-835 + GCCCAGGACCUGGUGGA 17 1221
BCLllA-836 + CUCGCUGAAGUGCUGCA 17 1222
BCLllA-837 + CAUGCCCUGCAUGACGU 17 1223
BCLllA-838 + AUGCCCUGCAUGACGUC 17 1224
BCLllA-839 + CCUGCAUGACGUCGGGC 17 1225 BCLllA-840 + CUGCAUGACGUCGGGCA 17 1226
BCLllA-841 + UGACGUCGGGCAGGGCG 17 1227
BCLllA-842 + CCCGCGAGCUGUUCUCG 17 1228
BCLllA-843 + GCGAGCUGUUCUCGUGG 17 1229
BCLllA-844 + GGUGGCGCGCCGCCUCC 17 1230
BCLllA-845 - CCCAGAGAGCUCAAGAUGUG 20 1231
BCLllA-846 - UCAAGAUGUGUGGCAGUUUU 20 1232
BCLllA-847 - GAUGUGUGGCAGUUUUCGGA 20 1233
BCLllA-848 + GCCACACAUCUUGAGCUCUC 20 1234
BCLllA-849 + CCACACAUCUUGAGCUCUCU 20 1235
BCLllA-850 + UCUCUGGGUACUACGCCGAA 20 1236
BCLllA-851 + CUCUGGGUACUACGCCGAAU 20 1237
BCLllA-852 + UCUGGGUACUACGCCGAAUG 20 1238
BCLllA-853 + CUGGGUACUACGCCGAAUGG 20 1239
BCLllA-854 - CUUCACACACCCCCAUU 17 1240
BCLllA-855 - AGAGAGCUCAAGAUGUG 17 1241
BCLllA-856 - AGAUGUGUGGCAGUUUU 17 1242
BCLllA-857 - GUGUGGCAGUUU UCGGA 17 1243
BCLllA-858 + ACACAUCUUGAGCUCUC 17 1244
BCLllA-859 + CACAUCUUGAGCUCUCU 17 1245
BCLllA-860 + CUGGGUACUACGCCGAA 17 1246
BCLllA-861 + UGGGUACUACGCCGAAU 17 1247
BCLllA-862 + GGGUACUACGCCGAAUG 17 1248
BCLllA-863 + GGUACUACGCCGAAUGG 17 1249
Table IE provides exemplary targeting domains for knocking out the BCL11A gene. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase).
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Table IE
Figure imgf000132_0001
BCLllA-902 - UUGUUUAUCAACGUCAUCUA 20 1288
BCLllA-903 - UGUUUAUCAACGUCAUCUAG 20 1289
BCLllA-904 - CUAGAGGAAUUUGCCCCAAA 20 1290
BCLllA-905 - UAGAGGAAUUUGCCCCAAAC 20 1291
BCLllA-906 - AGCCAUUCUUACAGAUG 17 1292
BCLllA-907 - AACCAGACCACGGCCCG 17 1293
BCLllA-908 - ACCAGACCACGGCCCGU 17 1294
BCLllA-909 - CCAGACCACGGCCCGUU 17 1295
BCLllA-910 - CGGCCCGUUGGGAGCUC 17 1296
BCLllA-911 - CCCGUUGGGAGCUCCAG 17 1297
BCLllA-912 - CCGUUGGGAGCUCCAGA 17 1298
BCLllA-913 - CGUUGGGAGCUCCAGAA 17 1299
BCLllA-914 - UCAUGACCUCCUCACCU 17 1300
BCLllA-915 - CCUGUGGGCAGUGCCAG 17 1301
BCLllA-916 - GCCAGAUGAACUUCCCA 17 1302
BCLllA-917 - CCAGAUGAACUUCCCAU 17 1303
BCLllA-918 - CAGAUGAACUUCCCAUU 17 1304
BCLllA-919 - AGAUGAACUUCCCAUUG 17 1305
BCLllA-920 - GGACAUUCUUAUUUUUA 17 1306
BCLllA-921 - AUUUUUAUCGAGCACAA 17 1307
BCLllA-922 - UUUUUAUCGAGCACAAA 17 1308
BCLllA-923 - CAAUGGCAGCCUCUGCU 17 1309
BCLllA-924 - UCUGCUUAGAAAAAGCU 17 1310
BCLllA-925 - ACCUUCCCCUUCACCAA 17 1311
BCLllA-926 - CCCCUUCACCAAUCGAG 17 1312
BCLllA-927 - AAAAAGCAUCCAAUCCC 17 1313
BCLllA-928 - AAAAGCAUCCAAUCCCG 17 1314
BCLllA-929 - UGGCAUCCAGGUCACGC 17 1315
BCLllA-930 - GCAUCCAGGUCACGCCA 17 1316
BCLllA-931 - UGUUUAUCAACGUCAUC 17 1317
BCLllA-932 - UUUAUCAACGUCAUCUA 17 1318
BCLllA-933 - UUAUCAACGUCAUCUAG 17 1319
BCLllA-934 - GAGGAAUUUGCCCCAAA 17 1320
BCLllA-935 - AGGAAUUUGCCCCAAAC 17 1321
BCLllA-936 + UCAUCUGUAAGAAUGGCUUC 20 1322
BCLllA-937 + UGGUCUGGUUCAUCAUCUGU 20 1323
BCLllA-938 + AUCCCCUUCUGGAGCUCCCA 20 1324
BCLllA-939 + AGGAGGUCAUGAUCCCCUUC 20 1325
BCLllA-940 + GAGGAGGUCAUGAUCCCCUU 20 1326
BCLllA-941 + UCUGGCACUGCCCACAGGUG 20 1327
BCLllA-942 + AUCUGGCACUGCCCACAGGU 20 1328
BCLllA-943 + UCAUCUGGCACUGCCCACAG 20 1329 BCLllA-944 + AAAUAAGAAUGUCCCCCAAU 20 1330
BCLllA-945 + AAAAUAAGAAUGUCCCCCAA 20 1331
BCLllA-946 + AAAAAUAAGAAUGUCCCCCA 20 1332
BCLllA-947 + CGUUUGUGCUCGAUAAAAAU 20 1333
BCLllA-948 + UAUCCACAGCU UUUUCUAAG 20 1334
BCLllA-949 + U UUCAUCUCGAUUGGUGAAG 20 1335
BCLllA-950 + UUUUCAUCUCGAUUGGUGAA 20 1336
BCLllA-951 + U UUUUCAUCUCGAUUGGUGA 20 1337
BCLllA-952 + UUUUUUCAUCUCGAUUGGUG 20 1338
BCLllA-953 + UGCU UUUUUCAUCUCGAUUG 20 1339
BCLllA-954 + GGAUGCCAACCUCCACGGGA 20 1340
BCLllA-955 + GACCUGGAUGCCAACCUCCA 20 1341
BCLllA-956 + UGACCUGGAUGCCAACCUCC 20 1342
BCLllA-957 + UCGUCAUCCUCUGGCGUGAC 20 1343
BCLllA-958 + CUGCUAUGUGUUCCUGUUUG 20 1344
BCLllA-959 + CUGCUAUGUGUUCCUGUUUG 20 1345
BCLllA-960 + UCUGUAAGAAUGGCUUC 17 1346
BCLllA-961 + UCUGGUUCAUCAUCUGU 17 1347
BCLllA-962 + CCCUUCUGGAGCUCCCA 17 1348
BCLllA-963 + AGGUCAUGAUCCCCUUC 17 1349
BCLllA-964 + GAGGUCAUGAUCCCCUU 17 1350
BCLllA-965 + GGCACUGCCCACAGGUG 17 1351
BCLllA-966 + UGGCACUGCCCACAGGU 17 1352
BCLllA-967 + UCUGGCACUGCCCACAG 17 1353
BCLllA-968 + UAAGAAUGUCCCCCAAU 17 1354
BCLllA-969 + AUAAGAAUGUCCCCCAA 17 1355
BCLllA-970 + AAUAAGAAUGUCCCCCA 17 1356
BCLllA-971 + U UGUGCUCGAUAAAAAU 17 1357
BCLllA-972 + CCACAGCUU UUUCUAAG 17 1358
BCLllA-973 + CAUCUCGAUUGGUGAAG 17 1359
BCLllA-974 + UCAUCUCGAU UGGUGAA 17 1360
BCLllA-975 + U UCAUCUCGAUUGGUGA 17 1361
BCLllA-976 + UUUCAUCUCGAUUGGUG 17 1362
BCLllA-977 + U UUUUUCAUCUCGAUUG 17 1363
BCLllA-978 + UGCCAACCUCCACGGGA 17 1364
BCLllA-979 + CUGGAUGCCAACCUCCA 17 1365
BCLllA-980 + CCUGGAUGCCAACCUCC 17 1366
BCLllA-981 + UCAUCCUCUGGCGUGAC 17 1367
BCLllA-982 + UGCUAUGUGUUCCUGU U 17 1368
BCLllA-983 + CUGCUAUGUGUUCCUGU 17 1369
BCLllA-984 - CUCCUCCCCUCGUUCUGCAC 20 1370
BCLllA-985 - UCCUCCCCUCGUUCUGCACA 20 1371 BCLllA-986 - UGGAGCUCUAAUCCCCACGC 20 1372
BCLllA-987 - GGAGCUCUAAUCCCCACGCC 20 1373
BCLllA-988 - CUCUAAUCCCCACGCCUGGG 20 1374
BCLllA-989 - CCCCACGCCUGGGAUGAGUG 20 1375
BCLllA-990 - UGAGUGCAGAAUAUGCCCCG 20 1376
BCLllA-991 - CUCCCCUCGUUCUGCAC 17 1377
BCLllA-992 - UCCCCUCGUUCUGCACA 17 1378
BCLllA-993 - AGCUCUAAUCCCCACGC 17 1379
BCLllA-994 - GCUCUAAUCCCCACGCC 17 1380
BCLllA-995 - UAAUCCCCACGCCUGGG 17 1381
BCLllA-996 - CACGCCUGGGAUGAGUG 17 1382
BCLllA-997 - GUGCAGAAUAUGCCCCG 17 1383
BCLllA-998 + GAGGAGAGGCCCCUCCAGUG 20 1384
BCLllA-999 + CAUGUGCAGAACGAGGGGAG 20 1385
BCLllA-1000 + UCCAUGUGCAGAACGAGGGG 20 1386
BCLllA-1001 + CUCCAUGUGCAGAACGAGGG 20 1387
BCLllA-1002 + AGCUCCAUGUGCAGAACGAG 20 1388
BCLllA-1003 + GAGCUCCAUGUGCAGAACGA 20 1389
BCLllA-1004 + AGAGCUCCAUGUGCAGAACG 20 1390
BCLllA-1005 + UAGAGCUCCAUGUGCAGAAC 20 1391
BCLllA-1006 + AUUAGAGCUCCAUGUGCAGA 20 1392
BCLllA-1007 + GGGGAUUAGAGCUCCAUGUG 20 1393
BCLllA-1008 + CUCAUCCCAGGCGUGGGGAU 20 1394
BCLllA-1009 + UCUGCACUCAUCCCAGGCGU 20 1395
BCLllA-1010 + UUCUGCACUCAUCCCAGGCG 20 1396
BCLllA-1011 + AUUCUGCACUCAUCCCAGGC 20 1397
BCLllA-1012 + GAGAGGCCCCUCCAGUG 17 1398
BCLllA-1013 + GUGCAGAACGAGGGGAG 17 1399
BCLllA-1014 + AUGUGCAGAACGAGGGG 17 1400
BCLllA-1015 + CAUGUGCAGAACGAGGG 17 1401
BCLllA-1016 + UCCAUGUGCAGAACGAG 17 1402
BCLllA-1017 + CUCCAUGUGCAGAACGA 17 1403
BCLllA-1018 + GCUCCAUGUGCAGAACG 17 1404
BCLllA-1019 + AGCUCCAUGUGCAGAAC 17 1405
BCLllA-1020 + AGAGCUCCAUGUGCAGA 17 1406
BCLllA-1021 + GAUUAGAGCUCCAUGUG 17 1407
BCLllA-1022 + AUCCCAGGCGUGGGGAU 17 1408
BCLllA-1023 + GCACUCAUCCCAGGCGU 17 1409
BCLllA-1024 + UGCACUCAUCCCAGGCG 17 1410
BCLllA-1025 + CUGCACUCAUCCCAGGC 17 1411
BCLllA-1026 - GGU UUCUCUUGCAACACGCA 20 1412
BCLllA-1027 - GCAACACGCACAGAACACUC 20 1413 BCLllA-1028 - GCACAGAACACUCAUGGAUU 20 1414
BCLllA-1029 - UCAUGGAUUAAGAAUCUACU 20 1415
BCLllA-1030 - AU U AAG AAU CU ACU U AG AAA 20 1416
BCLllA-1031 - AAUCUACUUAGAAAGCGAAC 20 1417
BCLllA-1032 - AUCUACUUAGAAAGCGAACA 20 1418
BCLllA-1033 - CACGGAAGUCCCCUGACCCC 20 1419
BCLllA-1034 - CCCGCGGGUUGGUAUCCCUU 20 1420
BCLllA-1035 - UAUCCCUUCAGGACUAGGUG 20 1421
BCLllA-1036 - UCCUUCCCAGCCACCUCUCC 20 1422
BCLllA-1037 - CCUUCCCAGCCACCUCUCCA 20 1423
BCLllA-1038 - AAUAACCCCUUUAACCUGCU 20 1424
BCLllA-1039 - CUUUAACCUGCUAAGAAUAC 20 1425
BCLllA-1040 - UAAGAAUACCAGGAUCAGUA 20 1426
BCLllA-1041 - AGAAUACCAGGAUCAGUAUC 20 1427
BCLllA-1042 - AAUACCAGGAUCAGUAUCGA 20 1428
BCLllA-1043 - GAGAGAGGCUUCCGGCCUGG 20 1429
BCLllA-1044 - AGAGGCUUCCGGCCUGGCAG 20 1430
BCLllA-1045 - CCCCCCUGUUUAGUCCACCA 20 1431
BCLllA-1046 - GUCCACCACCGAGACAUCAC 20 1432
BCLllA-1047 - UCACUUGGACCCCCACCGCA 20 1433
BCLllA-1048 - ACCCCCACCGCAUAGAGCGC 20 1434
BCLllA-1049 - CCCCCACCGCAUAGAGCGCC 20 1435
BCLllA-1050 - CCCCACCGCAUAGAGCGCCU 20 1436
BCLllA-1051 - ACCGCAUAGAGCGCCUGGGG 20 1437
BCLllA-1052 - CCGCAUAGAGCGCCUGGGGG 20 1438
BCLllA-1053 - CAUAGAGCGCCUGGGGGCGG 20 1439
BCLllA-1054 - UGGCCCUGGCCACCCAUCAC 20 1440
BCLllA-1055 - CAUCACCCGAGUGCCUUUGA 20 1441
BCLllA-1056 - CCUUUGACAGGGUGCUGCGG 20 1442
BCLllA-1057 - UGCGGUUGAAUCCAAUGGCU 20 1443
BCLllA-1058 - GCGGUUGAAUCCAAUGGCUA 20 1444
BCLllA-1059 - UGGCUAUGGAGCCUCCCGCC 20 1445
BCLllA-1060 - CCUCCCGCCAUGGAUUUCUC 20 1446
BCLllA-1061 - CUCCCGCCAUGGAUUUCUCU 20 1447
BCLllA-1062 - AUGGAUUUCUCUAGGAGACU 20 1448
BCLllA-1063 - GGAUUUCUCUAGGAGACUUA 20 1449
BCLllA-1064 - UAGGAGACUUAGAGAGCUGG 20 1450
BCLllA-1065 - AGGAGACUUAGAGAGCUGGC 20 1451
BCLllA-1066 - GGAGACUUAGAGAGCUGGCA 20 1452
BCLllA-1067 - CCCGGUCAAGUCCAAGUCAU 20 1453
BCLllA-1068 - GCGGCAAGACGUUCAAAUUU 20 1454
BCLllA-1069 - UGGUGCACCGGCGCAGCCAC 20 1455 BCLllA-1070 - GCACCGGCGCAGCCACACGG 20 1456
BCLllA-1071 - ACCGGCGCAGCCACACGGGC 20 1457
BCLllA-1072 - CGUGCACCCAGGCCAGCAAG 20 1458
BCLllA-1073 - CCAGCAAGCUGAAGCGCCAC 20 1459
BCLllA-1074 - GUCUCUCCACCGCCAGCUCC 20 1460
BCLllA-1075 - UCUCUCCACCGCCAGCUCCC 20 1461
BCLllA-1076 - AACCCGGCACCAGCGACUUG 20 1462
BCLllA-1077 - AGUCCGUGGUGGCCAAGUUC 20 1463
BCLllA-1078 - CGUGGUGGCCAAGUUCAAGA 20 1464
BCLllA-1079 - UGGUGGCCAAGUUCAAGAGC 20 1465
BCLllA-1080 - AGAACGACCCCAACCUGAUC 20 1466
BCLllA-1081 - GAACGACCCCAACCUGAUCC 20 1467
BCLllA-1082 - ACGACCCCAACCUGAUCCCG 20 1468
BCLllA-1083 - CCCCAACCUGAUCCCGGAGA 20 1469
BCLllA-1084 - CCCAACCUGAUCCCGGAGAA 20 1470
BCLllA-1085 - CCAACCUGAUCCCGGAGAAC 20 1471
BCLllA-1086 - CCUGAUCCCGGAGAACGGGG 20 1472
BCLllA-1087 - UGAUCCCGGAGAACGGGGAC 20 1473
BCLllA-1088 - GAUCCCGGAGAACGGGGACG 20 1474
BCLllA-1089 - UCCCGGAGAACGGGGACGAG 20 1475
BCLllA-1090 - CCCGGAGAACGGGGACGAGG 20 1476
BCLllA-1091 - GGAGAACGGGGACGAGGAGG 20 1477
BCLllA-1092 - AGAACGGGGACGAGGAGGAA 20 1478
BCLllA-1093 - GAACGGGGACGAGGAGGAAG 20 1479
BCLllA-1094 - ACGGGGACGAGGAGGAAGAG 20 1480
BCLllA-1095 - CGAGGAGGAAGAGGAGGACG 20 1481
BCLllA-1096 - AGGAGGAAGAGGAGGACGAC 20 1482
BCLllA-1097 - GGAGGAAGAGGAGGACGACG 20 1483
BCLllA-1098 - GGAAGAGGAGGACGACGAGG 20 1484
BCLllA-1099 - AAGAGGAGGACGACGAGGAA 20 1485
BCLllA-1100 - AGAGGAGGACGACGAGGAAG 20 1486
BCLllA-1101 - GGAGGACGACGAGGAAGAGG 20 1487
BCLllA-1102 - GGACGACGAGGAAGAGGAAG 20 1488
BCLllA-1103 - ACGACGAGGAAGAGGAAGAA 20 1489
BCLllA-1104 - CGACGAGGAAGAGGAAGAAG 20 1490
BCLllA-1105 - ACGAGGAAGAGGAAGAAGAG 20 1491
BCLllA-1106 - CGAGGAAGAGGAAGAAGAGG 20 1492
BCLllA-1107 - GGAAGAGGAAGAAGAGGAGG 20 1493
BCLllA-1108 - AAGAGGAAGAAGAGGAGGAA 20 1494
BCLllA-1109 - AGAGGAAGAAGAGGAGGAAG 20 1495
BCLllA-1110 - AGGAAGAAGAGGAGGAAGAG 20 1496
BCLllA-1111 - GGAAGAAGAGGAGGAAGAGG 20 1497 BCLllA-1112 - AAGAAGAGGAGGAAGAGGAG 20 1498
BCLllA-1113 - AGAAGAGGAGGAAGAGGAGG 20 1499
BCLllA-1114 - AAGAGGAGGAAGAGGAGGAG 20 1500
BCLllA-1115 - AGAGGAGGAAGAGGAGGAGG 20 1501
BCLllA-1116 - AAGAGGAGGAGGAGGAGCUG 20 1502
BCLllA-1117 - AGAGGAGGAGGAGGAGCUGA 20 1503
BCLllA-1118 - AGGAGGAGGAGGAGCUGACG 20 1504
BCLllA-1119 - GGAGGAGGAGCUGACGGAGA 20 1505
BCLllA-1120 - AGGAGGAGCUGACGGAGAGC 20 1506
BCLllA-1121 - GAGGAGCUGACGGAGAGCGA 20 1507
BCLllA-1122 - AGCUGACGGAGAGCGAGAGG 20 1508
BCLllA-1123 - CGAGAGGGUGGACUACGGCU 20 1509
BCLllA-1124 - GGGUGGACUACGGCUUCGGG 20 1510
BCLllA-1125 - ACUACGGCUUCGGGCUGAGC 20 1511
BCLllA-1126 - CUACGGCUUCGGGCUGAGCC 20 1512
BCLllA-1127 - CCUGGAGGCGGCGCGCCACC 20 1513
BCLllA-1128 - UGGAGGCGGCGCGCCACCAC 20 1514
BCLllA-1129 - CGCCACCACGAGAACAGCUC 20 1515
BCLllA-1130 - GCCACCACGAGAACAGCUCG 20 1516
BCLllA-1131 - ACAGCUCGCGGGGCGCGGUC 20 1517
BCLllA-1132 - CGCGGGGCGCGGUCGUGGGC 20 1518
BCLllA-1133 - CGCGGUCGUGGGCGUGGGCG 20 1519
BCLllA-1134 - CGGUCGUGGGCGUGGGCGAC 20 1520
BCLllA-1135 - GCGCCCUGCCCGACGUCAUG 20 1521
BCLllA-1136 - CAGCUCCAUGCAGCACUUCA 20 1522
BCLllA-1137 - GCGAGGCCUUCCACCAGGUC 20 1523
BCLllA-1138 - GGCCUUCCACCAGGUCCUGG 20 1524
BCLllA-1139 - CCUUCCACCAGGUCCUGGGC 20 1525
BCLllA-1140 - GCAUAAGCGCGGCCACCUGG 20 1526
BCLllA-1141 - GCGCGGCCACCUGGCCGAGG 20 1527
BCLllA-1142 - GCGGCCACCUGGCCGAGGCC 20 1528
BCLllA-1143 - CUGGCCGAGGCCGAGGGCCA 20 1529
BCLllA-1144 - UGGCCGAGGCCGAGGGCCAC 20 1530
BCLllA-1145 - GGGCCACAGGGACACUUGCG 20 1531
BCLllA-1146 - CGACGAAGACUCGGUGGCCG 20 1532
BCLllA-1147 - AAGACUCGGUGGCCGGCGAG 20 1533
BCLllA-1148 - UUAAUGGCCGCGGCUGCUCC 20 1534
BCLllA-1149 - UGGCCGCGGCUGCUCCCCGG 20 1535
BCLllA-1150 - GCUCCCCGGGCGAGUCGGCC 20 1536
BCLllA-1151 - CUCCCCGGGCGAGUCGGCCU 20 1537
BCLllA-1152 - UCCCCGGGCGAGUCGGCCUC 20 1538
BCLllA-1153 - CCCCGGGCGAGUCGGCCUCG 20 1539 BCLllA-1154 - GCCUGUCCAAAAAGCUGCUG 20 1540
BCLllA-1155 - UGCUGGGCAGCCCCAGCUCG 20 1541
BCLllA-1156 - CUUCUCUAAGCGCAUCAAGC 20 1542
BCLllA-1157 - UCUCUAAGCGCAUCAAGCUC 20 1543
BCLllA-1158 - CUAAGCGCAUCAAGCUCGAG 20 1544
BCLllA-1159 - UAAGCGCAUCAAGCUCGAGA 20 1545
BCLllA-1160 - CCCCGGCCGCGAUGCCCAAC 20 1546
BCLllA-1161 - CCCGGCCGCGAUGCCCAACA 20 1547
BCLllA-1162 - CGGCCGCGAUGCCCAACACG 20 1548
BCLllA-1163 - CAAAGAUCCCUUCCUUAGCU 20 1549
BCLllA-1164 - AAAGAUCCCUUCCUUAGCUU 20 1550
BCLllA-1165 - AAUCGCCUUUUGCCUCCUCG 20 1551
BCLllA-1166 - AUCGCCUUUUGCCUCCUCGU 20 1552
BCLllA-1167 - CCUCCUCGUCGGAGCACUCC 20 1553
BCLllA-1168 - CUCCUCGUCGGAGCACUCCU 20 1554
BCLllA-1169 - CCUCGUCGGAGCACUCCUCG 20 1555
BCLllA-1170 - GUCGGAGCACUCCUCGGAGA 20 1556
BCLllA-1171 - UCGGAGCACUCCUCGGAGAA 20 1557
BCLllA-1172 - CGGAGCACUCCUCGGAGAAC 20 1558
BCLllA-1173 - UUUGCGCUUCUCCACACCGC 20 1559
BCLllA-1174 - UUGCGCUUCUCCACACCGCC 20 1560
BCLllA-1175 - UGCGCUUCUCCACACCGCCC 20 1561
BCLllA-1176 - GCGCUUCUCCACACCGCCCG 20 1562
BCLllA-1177 - UCUCCACACCGCCCGGGGAG 20 1563
BCLllA-1178 - CACACCGCCCGGGGAGCUGG 20 1564
BCLllA-1179 - ACACCGCCCGGGGAGCUGGA 20 1565
BCLllA-1180 - ACCGCCCGGGGAGCUGGACG 20 1566
BCLllA-1181 - CCGCCCGGGGAGCUGGACGG 20 1567
BCLllA-1182 - GGGAGCUGGACGGAGGGAUC 20 1568
BCLllA-1183 - GGAGCUGGACGGAGGGAUCU 20 1569
BCLllA-1184 - GGAUCUCGGGGCGCAGCGGC 20 1570
BCLllA-1185 - GAUCUCGGGGCGCAGCGGCA 20 1571
BCLllA-1186 - AUCUCGGGGCGCAGCGGCAC 20 1572
BCLllA-1187 - GGGGCGCAGCGGCACGGGAA 20 1573
BCLllA-1188 - GGGCGCAGCGGCACGGGAAG 20 1574
BCLllA-1189 - GCGCAGCGGCACGGGAAGUG 20 1575
BCLllA-1190 - CGCAGCGGCACGGGAAGUGG 20 1576
BCLllA-1191 - GCAGCGGCACGGGAAGUGGA 20 1577
BCLllA-1192 - GCACGCCCCAUAUUAGUGGU 20 1578
BCLllA-1193 - CCCAUAUUAGUGGUCCGGGC 20 1579
BCLllA-1194 - CCCGGGCAGGCCCAGCUCAA 20 1580
BCLllA-1195 - CGGGCAGGCCCAGCUCAAAA 20 1581 BCLllA-1196 - UUCUCUUGCAACACGCA 17 1582
BCLllA-1197 - ACACGCACAGAACACUC 17 1583
BCLllA-1198 - CAGAACACUCAUGGAUU 17 1584
BCLllA-1199 - UGGAUUAAGAAUCUACU 17 1585
BCLllA-1200 - AAGAAUCUACUUAGAAA 17 1586
BCLllA-1201 - CUACUUAGAAAGCGAAC 17 1587
BCLllA-1202 - UACUUAGAAAGCGAACA 17 1588
BCLllA-1203 - GGAAGUCCCCUGACCCC 17 1589
BCLllA-1204 - GCGGGUUGGUAUCCCUU 17 1590
BCLllA-1205 - CCCUUCAGGACUAGGUG 17 1591
BCLllA-1206 - UUCCCAGCCACCUCUCC 17 1592
BCLllA-1207 - UCCCAGCCACCUCUCCA 17 1593
BCLllA-1208 - AACCCCUUUAACCUGCU 17 1594
BCLllA-1209 - UAACCUGCUAAGAAUAC 17 1595
BCLllA-1210 - GAAUACCAGGAUCAGUA 17 1596
BCLllA-1211 - AUACCAGGAUCAGUAUC 17 1597
BCLllA-1212 - ACCAGGAUCAGUAUCGA 17 1598
BCLllA-1213 - AGAGGCUUCCGGCCUGG 17 1599
BCLllA-1214 - GGCUUCCGGCCUGGCAG 17 1600
BCLllA-1215 - CCCUGUUUAGUCCACCA 17 1601
BCLllA-1216 - CACCACCGAGACAUCAC 17 1602
BCLllA-1217 - CUUGGACCCCCACCGCA 17 1603
BCLllA-1218 - CCCACCGCAUAGAGCGC 17 1604
BCLllA-1219 - CCACCGCAUAGAGCGCC 17 1605
BCLllA-1220 - CACCGCAUAGAGCGCCU 17 1606
BCLllA-1221 - GCAUAGAGCGCCUGGGG 17 1607
BCLllA-1222 - CAUAGAGCGCCUGGGGG 17 1608
BCLllA-1223 - AGAGCGCCUGGGGGCGG 17 1609
BCLllA-1224 - CCCUGGCCACCCAUCAC 17 1610
BCLllA-1225 - CACCCGAGUGCCUUUGA 17 1611
BCLllA-1226 - UUGACAGGGUGCUGCGG 17 1612
BCLllA-1227 - GGUUGAAUCCAAUGGCU 17 1613
BCLllA-1228 - GUUGAAUCCAAUGGCUA 17 1614
BCLllA-1229 - CUAUGGAGCCUCCCGCC 17 1615
BCLllA-1230 - CCCGCCAUGGAUUUCUC 17 1616
BCLllA-1231 - CCGCCAUGGAUUUCUCU 17 1617
BCLllA-1232 - GAUUUCUCUAGGAGACU 17 1618
BCLllA-1233 - UUUCUCUAGGAGACUUA 17 1619
BCLllA-1234 - GAGACUUAGAGAGCUGG 17 1620
BCLllA-1235 - AGACUUAGAGAGCUGGC 17 1621
BCLllA-1236 - GACUUAGAGAGCUGGCA 17 1622
BCLllA-1237 - G G U CAAG U CCAAG U CAU 17 1623 BCLllA-1238 - GCAAGACG U U CAAAU U U 17 1624
BCLllA-1239 - UGCACCGGCGCAGCCAC 17 1625
BCLllA-1240 - CCGGCGCAGCCACACGG 17 1626
BCLllA-1241 - GGCGCAGCCACACGGGC 17 1627
BCLllA-1242 - GCACCCAGGCCAGCAAG 17 1628
BCLllA-1243 - GCAAGCUGAAGCGCCAC 17 1629
BCLllA-1244 - UCUCCACCGCCAGCUCC 17 1630
BCLllA-1245 - CUCCACCGCCAGCUCCC 17 1631
BCLllA-1246 - CCGGCACCAGCGACUUG 17 1632
BCLllA-1247 - CCGUGGUGGCCAAGUUC 17 1633
BCLllA-1248 - GGUGGCCAAGUUCAAGA 17 1634
BCLllA-1249 - UGGCCAAG U U CAAG AG C 17 1635
BCLllA-1250 - ACGACCCCAACCUGAUC 17 1636
BCLllA-1251 - CGACCCCAACCUGAUCC 17 1637
BCLllA-1252 - ACCCCAACCUGAUCCCG 17 1638
BCLllA-1253 - CAACCUGAUCCCGGAGA 17 1639
BCLllA-1254 - AACCUGAUCCCGGAGAA 17 1640
BCLllA-1255 - ACCUGAUCCCGGAGAAC 17 1641
BCLllA-1256 - GAUCCCGGAGAACGGGG 17 1642
BCLllA-1257 - UCCCGGAGAACGGGGAC 17 1643
BCLllA-1258 - CCCGGAGAACGGGGACG 17 1644
BCLllA-1259 - CGGAGAACGGGGACGAG 17 1645
BCLllA-1260 - GGAGAACGGGGACGAGG 17 1646
BCLllA-1261 - GAACGGGGACGAGGAGG 17 1647
BCLllA-1262 - ACGGGGACGAGGAGGAA 17 1648
BCLllA-1263 - CGGGGACGAGGAGGAAG 17 1649
BCLllA-1264 - GGGACGAGGAGGAAGAG 17 1650
BCLllA-1265 - GGAGGAAGAGGAGGACG 17 1651
BCLllA-1266 - AGGAAGAGGAGGACGAC 17 1652
BCLllA-1267 - GGAAGAGGAGGACGACG 17 1653
BCLllA-1268 - AGAGGAGGACGACGAGG 17 1654
BCLllA-1269 - AGGAGGACGACGAGGAA 17 1655
BCLllA-1270 - GGAGGACGACGAGGAAG 17 1656
BCLllA-1271 - GGACGACGAGGAAGAGG 17 1657
BCLllA-1272 - CGACGAGGAAGAGGAAG 17 1658
BCLllA-1273 - ACGAGGAAGAGGAAGAA 17 1659
BCLllA-1274 - CGAGGAAGAGGAAGAAG 17 1660
BCLllA-1275 - AGGAAGAGGAAGAAGAG 17 1661
BCLllA-1276 - GGAAGAGGAAGAAGAGG 17 1662
BCLllA-1277 - AGAGGAAGAAGAGGAGG 17 1663
BCLllA-1278 - AGGAAGAAGAGGAGGAA 17 1664
BCLllA-1279 - GGAAGAAGAGGAGGAAG 17 1665 BCLllA-1280 - AAGAAGAGGAGGAAGAG 17 1666
BCLllA-1281 - AGAAGAGGAGGAAGAGG 17 1667
BCLllA-1282 - AAGAGGAGGAAGAGGAG 17 1668
BCLllA-1283 - AGAGGAGGAAGAGGAGG 17 1669
BCLllA-1284 - AGGAGGAAGAGGAGGAG 17 1670
BCLllA-1285 - GGAGGAAGAGGAGGAGG 17 1671
BCLllA-1286 - AGGAGGAGGAGGAGCUG 17 1672
BCLllA-1287 - GGAGGAGGAGGAGCUGA 17 1673
BCLllA-1288 - AGGAGGAGGAGCUGACG 17 1674
BCLllA-1289 - GGAGGAGCUGACGGAGA 17 1675
BCLllA-1290 - AGGAGCUGACGGAGAGC 17 1676
BCLllA-1291 - GAGCUGACGGAGAGCGA 17 1677
BCLllA-1292 - UGACGGAGAGCGAGAGG 17 1678
BCLllA-1293 - GAGGGUGGACUACGGCU 17 1679
BCLllA-1294 - UGGACUACGGCUUCGGG 17 1680
BCLllA-1295 - ACGGCUUCGGGCUGAGC 17 1681
BCLllA-1296 - CGGCUUCGGGCUGAGCC 17 1682
BCLllA-1297 - GGAGGCGGCGCGCCACC 17 1683
BCLllA-1298 - AGGCGGCGCGCCACCAC 17 1684
BCLllA-1299 - CACCACGAGAACAGCUC 17 1685
BCLllA-1300 - ACCACGAGAACAGCUCG 17 1686
BCLllA-1301 - GCUCGCGGGGCGCGGUC 17 1687
BCLllA-1302 - GGGGCGCGGUCGUGGGC 17 1688
BCLllA-1303 - GGUCGUGGGCGUGGGCG 17 1689
BCLllA-1304 - UCGUGGGCGUGGGCGAC 17 1690
BCLllA-1305 - CCCUGCCCGACGUCAUG 17 1691
BCLllA-1306 - CUCCAUGCAGCACUUCA 17 1692
BCLllA-1307 - AGGCCUUCCACCAGGUC 17 1693
BCLllA-1308 - CUUCCACCAGGUCCUGG 17 1694
BCLllA-1309 - UCCACCAGGUCCUGGGC 17 1695
BCLllA-1310 - UAAGCGCGGCCACCUGG 17 1696
BCLllA-1311 - CGGCCACCUGGCCGAGG 17 1697
BCLllA-1312 - GCCACCUGGCCGAGGCC 17 1698
BCLllA-1313 - GCCGAGGCCGAGGGCCA 17 1699
BCLllA-1314 - CCGAGGCCGAGGGCCAC 17 1700
BCLllA-1315 - CCACAGGGACACUUGCG 17 1701
BCLllA-1316 - CGAAGACUCGGUGGCCG 17 1702
BCLllA-1317 - ACUCGGUGGCCGGCGAG 17 1703
BCLllA-1318 - AUGGCCGCGGCUGCUCC 17 1704
BCLllA-1319 - CCGCGGCUGCUCCCCGG 17 1705
BCLllA-1320 - CCCCGGGCGAGUCGGCC 17 1706
BCLllA-1321 - CCCGGGCGAGUCGGCCU 17 1707 BCLllA-1322 - CCGGGCGAGUCGGCCUC 17 1708
BCLllA-1323 - CGGGCGAGUCGGCCUCG 17 1709
BCLllA-1324 - UGUCCAAAAAGCUGCUG 17 1710
BCLllA-1325 - UGGGCAGCCCCAGCUCG 17 1711
BCLllA-1326 - CUCUAAGCGCAUCAAGC 17 1712
BCLllA-1327 - CUAAGCGCAUCAAGCUC 17 1713
BCLllA-1328 - AGCGCAUCAAGCUCGAG 17 1714
BCLllA-1329 - GCGCAUCAAGCUCGAGA 17 1715
BCLllA-1330 - CGGCCGCGAUGCCCAAC 17 1716
BCLllA-1331 - GGCCGCGAUGCCCAACA 17 1717
BCLllA-1332 - CCGCGAUGCCCAACACG 17 1718
BCLllA-1333 - AGAUCCCUUCCUUAGCU 17 1719
BCLllA-1334 - GAUCCCUUCCUUAGCUU 17 1720
BCLllA-1335 - CGCCUUUUGCCUCCUCG 17 1721
BCLllA-1336 - GCCUUUUGCCUCCUCGU 17 1722
BCLllA-1337 - CCUCGUCGGAGCACUCC 17 1723
BCLllA-1338 - CUCGUCGGAGCACUCCU 17 1724
BCLllA-1339 - CGUCGGAGCACUCCUCG 17 1725
BCLllA-1340 - GGAGCACUCCUCGGAGA 17 1726
BCLllA-1341 - GAGCACUCCUCGGAGAA 17 1727
BCLllA-1342 - AGCACUCCUCGGAGAAC 17 1728
BCLllA-1343 - GCGCUUCUCCACACCGC 17 1729
BCLllA-1344 - CGCUUCUCCACACCGCC 17 1730
BCLllA-1345 - GCUUCUCCACACCGCCC 17 1731
BCLllA-1346 - CUUCUCCACACCGCCCG 17 1732
BCLllA-1347 - CCACACCGCCCGGGGAG 17 1733
BCLllA-1348 - ACCGCCCGGGGAGCUGG 17 1734
BCLllA-1349 - CCGCCCGGGGAGCUGGA 17 1735
BCLllA-1350 - GCCCGGGGAGCUGGACG 17 1736
BCLllA-1351 - CCCGGGGAGCUGGACGG 17 1737
BCLllA-1352 - AGCUGGACGGAGGGAUC 17 1738
BCLllA-1353 - GCUGGACGGAGGGAUCU 17 1739
BCLllA-1354 - UCUCGGGGCGCAGCGGC 17 1740
BCLllA-1355 - CUCGGGGCGCAGCGGCA 17 1741
BCLllA-1356 - UCGGGGCGCAGCGGCAC 17 1742
BCLllA-1357 - GCGCAGCGGCACGGGAA 17 1743
BCLllA-1358 - CGCAGCGGCACGGGAAG 17 1744
BCLllA-1359 - CAGCGGCACGGGAAGUG 17 1745
BCLllA-1360 - AGCGGCACGGGAAGUGG 17 1746
BCLllA-1361 - GCGGCACGGGAAGUGGA 17 1747
BCLllA-1362 - CGCCCCAUAUUAGUGGU 17 1748
BCLllA-1363 - AUAUUAGUGGUCCGGGC 17 1749 BCLllA-1364 - GGGCAGGCCCAGCUCAA 17 1750
BCLllA-1365 - G CAG G CCC AG CU C AAAA 17 1751
BCLllA-1366 + AAGUUGUACAUGUGUAGCUG 20 1752
BCLllA-1367 + GCAAGAGAAACCAUGCACUG 20 1753
BCLllA-1368 + GUGUUCUGUGCGUGU UGCAA 20 1754
BCLllA-1369 + GAGUGUUCUGUGCGUGUUGC 20 1755
BCLllA-1370 + UCUAAGUAGAUUCUUAAUCC 20 1756
BCLllA-1371 + GAUACCAACCCGCGGGGUCA 20 1757
BCLllA-1372 + GGAUACCAACCCGCGGGGUC 20 1758
BCLllA-1373 + GGGAUACCAACCCGCGGGGU 20 1759
BCLllA-1374 + CCUGAAGGGAUACCAACCCG 20 1760
BCLllA-1375 + UCCUGAAGGGAUACCAACCC 20 1761
BCLllA-1376 + CAUUCUGCACCUAGUCCUGA 20 1762
BCLllA-1377 + ACAUUCUGCACCUAGUCCUG 20 1763
BCLllA-1378 + AGGACAUUCUGCACCUAGUC 20 1764
BCLllA-1379 + CCCAUGGAGAGGUGGCUGGG 20 1765
BCLllA-1380 + AAUCCCAUGGAGAGGUGGCU 20 1766
BCLllA-1381 + GAAUCCCAUGGAGAGGUGGC 20 1767
BCLllA-1382 + UGAAUCCCAUGGAGAGGUGG 20 1768
BCLllA-1383 + UCUGCAAUAUGAAUCCCAUG 20 1769
BCLllA-1384 + UGUCUGCAAUAUGAAUCCCA 20 1770
BCLllA-1385 + UUGUCUGCAAUAUGAAUCCC 20 1771
BCLllA-1386 + AAGGGGUUAUUGUCUGCAAU 20 1772
BCLllA-1387 + UGGUAUUCUUAGCAGGUUAA 20 1773
BCLllA-1388 + CUGGUAUUCUUAGCAGGUUA 20 1774
BCLllA-1389 + AAAGCGCCCUUCUGCCAGGC 20 1775
BCLllA-1390 + GAAAGCGCCCUUCUGCCAGG 20 1776
BCLllA-1391 + CUAAACAGGGGGGGAGUGGG 20 1777
BCLllA-1392 + ACUAAACAGGGGGGGAGUGG 20 1778
BCLllA-1393 + GUGGACUAAACAGGGGGGGA 20 1779
BCLllA-1394 + GGUGGUGGACUAAACAGGGG 20 1780
BCLllA-1395 + CGGUGGUGGACUAAACAGGG 20 1781
BCLllA-1396 + UCGGUGGUGGACUAAACAGG 20 1782
BCLllA-1397 + CUCGGUGGUGGACUAAACAG 20 1783
BCLllA-1398 + UCUCGGUGGUGGACUAAACA 20 1784
BCLllA-1399 + GUCUCGGUGGUGGACUAAAC 20 1785
BCLllA-1400 + UGUCUCGGUGGUGGACUAAA 20 1786
BCLllA-1401 + GUCCAAGUGAUGUCUCGGUG 20 1787
BCLllA-1402 + CCCCAGGCGCUCUAUGCGGU 20 1788
BCLllA-1403 + CCCCCAGGCGCUCUAUGCGG 20 1789
BCLllA-1404 + GCCCCCAGGCGCUCUAUGCG 20 1790
BCLllA-1405 + GCACUCGGGUGAUGGGUGGC 20 1791 BCLllA-1406 + CUGUCAAAGGCACUCGGGUG 20 1792
BCLllA-1407 + C AG CACCCUGU CAAAG G CAC 20 1793
BCLllA-1408 + GGCGGGAGGCUCCAUAGCCA 20 1794
BCLllA-1409 + CUCCUAGAGAAAUCCAUGGC 20 1795
BCLllA-1410 + UCUCCUAGAGAAAUCCAUGG 20 1796
BCLllA-1411 + GUCUCCUAGAGAAAUCCAUG 20 1797
BCLllA-1412 + CCAGCUCUCUAAGUCUCCUA 20 1798
BCLllA-1413 + UGCCAGCUCUCUAAGUCUCC 20 1799
BCLllA-1414 + GGGCCGGCCUGGGGACAGCG 20 1800
BCLllA-1415 + GCAUAGGGCUGGGCCGGCCU 20 1801
BCLllA-1416 + UGCAUAGGGCUGGGCCGGCC 20 1802
BCLllA-1417 + U UGCAUAGGGCUGGGCCGGC 20 1803
BCLllA-1418 + GCAGUAACCUUUGCAUAGGG 20 1804
BCLllA-1419 + UGGUUGCAGUAACCUU UGCA 20 1805
BCLllA-1420 + AGGGCGGCUUGCUACCUGGC 20 1806
BCLllA-1421 + AAGGGCGGCUUGCUACCUGG 20 1807
BCLllA-1422 + GGAGGGGGGGCGUCGCCAGG 20 1808
BCLllA-1423 + GAGGGAGGGGGGGCGUCGCC 20 1809
BCLllA-1424 + GGAGGGAGGGGGGGCGUCGC 20 1810
BCLllA-1425 + CGGAUUGCAGAGGAGGGAGG 20 1811
BCLllA-1426 + GCGGAUUGCAGAGGAGGGAG 20 1812
BCLllA-1427 + GGCGGAUUGCAGAGGAGGGA 20 1813
BCLllA-1428 + GGGCGGAUUGCAGAGGAGGG 20 1814
BCLllA-1429 + GGGGCGGAUUGCAGAGGAGG 20 1815
BCLllA-1430 + GAGGGGCGGAUUGCAGAGGA 20 1816
BCLllA-1431 + GGAGGGGCGGAUUGCAGAGG 20 1817
BCLllA-1432 + AGGAGGGGCGGAUUGCAGAG 20 1818
BCLllA-1433 + GGAGGAGGGGCGGAUUGCAG 20 1819
BCLllA-1434 + GGGAGGAGGGGCGGAUUGCA 20 1820
BCLllA-1435 + GAGGGAGGAGGGGCGGAUUG 20 1821
BCLllA-1436 + GGGGCUGGGAGGGAGGAGGG 20 1822
BCLllA-1437 + ACCGGGGGCUGGGAGGGAGG 20 1823
BCLllA-1438 + GACCGGGGGCUGGGAGGGAG 20 1824
BCLllA-1439 + UUGACCGGGGGCUGGGAGGG 20 1825
BCLllA-1440 + CUUGACCGGGGGCUGGGAGG 20 1826
BCLllA-1441 + GACUUGACCGGGGGCUGGGA 20 1827
BCLllA-1442 + GGACUUGACCGGGGGCUGGG 20 1828
BCLllA-1443 + UGGACUUGACCGGGGGCUGG 20 1829
BCLllA-1444 + CUUGGACUUGACCGGGGGCU 20 1830
BCLllA-1445 + ACU UGGACUUGACCGGGGGC 20 1831
BCLllA-1446 + GACUUGGACUUGACCGGGGG 20 1832
BCLllA-1447 + CGCAUGACUUGGACUUGACC 20 1833 BCLllA-1448 + UCGCAUGACUUGGACUUGAC 20 1834
BCLllA-1449 + CUCGCAUGACUUGGACU UGA 20 1835
BCLllA-1450 + UGCCGCAGAACUCGCAUGAC 20 1836
BCLllA-1451 + GAAAUUUGAACGUCUUGCCG 20 1837
BCLllA-1452 + CCACCAGGU UGCUCUGAAAU 20 1838
BCLllA-1453 + CGGUGCACCACCAGGUUGCU 20 1839
BCLllA-1454 + GGUCGCACAGGU UGCACUUG 20 1840
BCLllA-1455 + UGGCGCU UCAGCUUGCUGGC 20 1841
BCLllA-1456 + CGUCGGACU UGACCGUCAUG 20 1842
BCLllA-1457 + UCGUCGGACUUGACCGUCAU 20 1843
BCLllA-1458 + GUCGUCGGACUUGACCGUCA 20 1844
BCLllA-1459 + CGUCGUCGGACUUGACCGUC 20 1845
BCLllA-1460 + UGGCGGUGGAGAGACCGUCG 20 1846
BCLllA-1461 + GU UCCGGGGAGCUGGCGGUG 20 1847
BCLllA-1462 + GGGUUCCGGGGAGCUGGCGG 20 1848
BCLllA-1463 + CGGGU UCCGGGGAGCUGGCG 20 1849
BCLllA-1464 + GUCGCUGGUGCCGGGU UCCG 20 1850
BCLllA-1465 + AGUCGCUGGUGCCGGGUUCC 20 1851
BCLllA-1466 + AAGUCGCUGGUGCCGGGUUC 20 1852
BCLllA-1467 + CAAGUCGCUGGUGCCGGGUU 20 1853
BCLllA-1468 + UGCCCACCAAGUCGCUGGUG 20 1854
BCLllA-1469 + UGAACUUGGCCACCACGGAC 20 1855
BCLllA-1470 + CGCUCUUGAACUUGGCCACC 20 1856
BCLllA-1471 + GGUUGGGGUCGUUCUCGCUC 20 1857
BCLllA-1472 + CCCGUUCUCCGGGAUCAGGU 20 1858
BCLllA-1473 + CCCCGUUCUCCGGGAUCAGG 20 1859
BCLllA-1474 + UCCUCCUCGUCCCCGUUCUC 20 1860
BCLllA-1475 + UUCCUCCUCGUCCCCGUUCU 20 1861
BCLllA-1476 + GCGCCGCCUCCAGGCUCAGC 20 1862
BCLllA-1477 + CACGCCCACGACCGCGCCCC 20 1863
BCLllA-1478 + AUGCCCUGCAUGACGUCGGG 20 1864
BCLllA-1479 + GCACCAUGCCCUGCAUGACG 20 1865
BCLllA-1480 + CGCUGAAGUGCUGCAUGGAG 20 1866
BCLllA-1481 + GGCCUCGCUGAAGUGCUGCA 20 1867
BCLllA-1482 + AGGCCUCGCUGAAGUGCUGC 20 1868
BCLllA-1483 + GGACCUGGUGGAAGGCCUCG 20 1869
BCLllA-1484 + GCUUCUCGCCCAGGACCUGG 20 1870
BCLllA-1485 + UGCUUCUCGCCCAGGACCUG 20 1871
BCLllA-1486 + CCGCGCUUAUGCU UCUCGCC 20 1872
BCLllA-1487 + GCGGUCCGACUCGCCGGCCA 20 1873
BCLllA-1488 + CCCCGAGGCCGACUCGCCCG 20 1874
BCLllA-1489 + CCCCCGAGGCCGACUCGCCC 20 1875 BCLllA-1490 + CCCCCCGAGGCCGACUCGCC 20 1876
BCLllA-1491 + GCCCCCCGAGGCCGACUCGC 20 1877
BCLllA-1492 + CAGCUUUUUGGACAGGCCCC 20 1878
BCLllA-1493 + GGCUGCCCAGCAGCAGCUUU 20 1879
BCLllA-1494 + AGAGAAGGGGCUCAGCGAGC 20 1880
BCLllA-1495 + UAGAGAAGGGGCUCAGCGAG 20 1881
BCLllA-1496 + GCGCUUAGAGAAGGGGCUCA 20 1882
BCLllA-1497 + GAGCUUGAUGCGCUUAGAGA 20 1883
BCLllA-1498 + CGAGCU UGAUGCGCUUAGAG 20 1884
BCLllA-1499 + UCUCGAGCUUGAUGCGCUUA 20 1885
BCLllA-1500 + CUUCUCGAGCUUGAUGCGCU 20 1886
BCLllA-1501 + GGGGCAGGUCGAACUCCUUC 20 1887
BCLllA-1502 + GCAUCGCGGCCGGGGGCAGG 20 1888
BCLllA-1503 + CCGUGUUGGGCAUCGCGGCC 20 1889
BCLllA-1504 + UCCGUGUUGGGCAUCGCGGC 20 1890
BCLllA-1505 + CUCCGUGU UGGGCAUCGCGG 20 1891
BCLllA-1506 + GCGAGUACACGUUCUCCGUG 20 1892
BCLllA-1507 + CGCGUAGCCGGCGAGCCACU 20 1893
BCLllA-1508 + GCCUGGAGGCCGCGUAGCCG 20 1894
BCLllA-1509 + GAAGGGAUCUUUGAGCUGCC 20 1895
BCLllA-1510 + GGAAGGGAUCUUUGAGCUGC 20 1896
BCLllA-1511 + CGAAGCUAAGGAAGGGAUCU 20 1897
BCLllA-1512 + GGAGUCUCCGAAGCUAAGGA 20 1898
BCLllA-1513 + UGGAGUCUCCGAAGCUAAGG 20 1899
BCLllA-1514 + GUCUGGAGUCUCCGAAGCUA 20 1900
BCLllA-1515 + UGUCUGGAGUCUCCGAAGCU 20 1901
BCLllA-1516 + AAGGCGAUUGUCUGGAGUCU 20 1902
BCLllA-1517 + GGAGGCAAAAGGCGAUUGUC 20 1903
BCLllA-1518 + AGGAGGCAAAAGGCGAUUGU 20 1904
BCLllA-1519 + CUCCGAGGAGUGCUCCGACG 20 1905
BCLllA-1520 + UCUCCGAGGAGUGCUCCGAC 20 1906
BCLllA-1521 + GU UCUCCGAGGAGUGCUCCG 20 1907
BCLllA-1522 + GCGCAAACUCCCGUUCUCCG 20 1908
BCLllA-1523 + AGCGCAAACUCCCGUUCUCC 20 1909
BCLllA-1524 + GAAGCGCAAACUCCCGU UCU 20 1910
BCLllA-1525 + CCAGCUCCCCGGGCGGUGUG 20 1911
BCLllA-1526 + GUCCAGCUCCCCGGGCGGUG 20 1912
BCLllA-1527 + CGUCCAGCUCCCCGGGCGGU 20 1913
BCLllA-1528 + AGAUCCCUCCGUCCAGCUCC 20 1914
BCLllA-1529 + ACUUCCCGUGCCGCUGCGCC 20 1915
BCLllA-1530 + CCGGGCCCGGACCACUAAUA 20 1916
BCLllA-1531 + CCCGGGCCCGGACCACUAAU 20 1917 BCLllA-1532 + UGAGCUGGGCCUGCCCGGGC 20 1918
BCLllA-1533 + CUCUUUUGAGCUGGGCCUGC 20 1919
BCLllA-1534 + UGCGUCUGCCCUCUUU UGAG 20 1920
BCLllA-1535 + GUCGCUGCGUCUGCCCUCUU 20 1921
BCLllA-1536 + UUGUACAUGUGUAGCUG 17 1922
BCLllA-1537 + AGAGAAACCAUGCACUG 17 1923
BCLllA-1538 + U UCUGUGCGUGUUGCAA 17 1924
BCLllA-1539 + UGUUCUGUGCGUGUUGC 17 1925
BCLllA-1540 + AAGUAGAUUCUUAAUCC 17 1926
BCLllA-1541 + ACCAACCCGCGGGGUCA 17 1927
BCLllA-1542 + UACCAACCCGCGGGGUC 17 1928
BCLllA-1543 + AUACCAACCCGCGGGGU 17 1929
BCLllA-1544 + GAAGGGAUACCAACCCG 17 1930
BCLllA-1545 + UGAAGGGAUACCAACCC 17 1931
BCLllA-1546 + UCUGCACCUAGUCCUGA 17 1932
BCLllA-1547 + UUCUGCACCUAGUCCUG 17 1933
BCLllA-1548 + ACAUUCUGCACCUAGUC 17 1934
BCLllA-1549 + AUGGAGAGGUGGCUGGG 17 1935
BCLllA-1550 + CCCAUGGAGAGGUGGCU 17 1936
BCLllA-1551 + UCCCAUGGAGAGGUGGC 17 1937
BCLllA-1552 + AUCCCAUGGAGAGGUGG 17 1938
BCLllA-1553 + GCAAUAUGAAUCCCAUG 17 1939
BCLllA-1554 + CUGCAAUAUGAAUCCCA 17 1940
BCLllA-1555 + UCUGCAAUAUGAAUCCC 17 1941
BCLllA-1556 + GGGUUAUUGUCUGCAAU 17 1942
BCLllA-1557 + UAUUCUUAGCAGGUUAA 17 1943
BCLllA-1558 + GUAUUCUUAGCAGGUUA 17 1944
BCLllA-1559 + GCGCCCUUCUGCCAGGC 17 1945
BCLllA-1560 + AGCGCCCUUCUGCCAGG 17 1946
BCLllA-1561 + AACAGGGGGGGAGUGGG 17 1947
BCLllA-1562 + AAACAGGGGGGGAGUGG 17 1948
BCLllA-1563 + GACUAAACAGGGGGGGA 17 1949
BCLllA-1564 + GGUGGACUAAACAGGGG 17 1950
BCLllA-1565 + UGGUGGACUAAACAGGG 17 1951
BCLllA-1566 + GUGGUGGACUAAACAGG 17 1952
BCLllA-1567 + GGUGGUGGACUAAACAG 17 1953
BCLllA-1568 + CGGUGGUGGACUAAACA 17 1954
BCLllA-1569 + UCGGUGGUGGACUAAAC 17 1955
BCLllA-1570 + CUCGGUGGUGGACUAAA 17 1956
BCLllA-1571 + CAAGUGAUGUCUCGGUG 17 1957
BCLllA-1572 + CAGGCGCUCUAUGCGGU 17 1958
BCLllA-1573 + CCAGGCGCUCUAUGCGG 17 1959 BCLllA-1574 + CCCAGGCGCUCUAUGCG 17 1960
BCLllA-1575 + CUCGGGUGAUGGGUGGC 17 1961
BCLllA-1576 + UCAAAGGCACUCGGGUG 17 1962
BCLllA-1577 + CACCCUGUCAAAGGCAC 17 1963
BCLllA-1578 + GGGAGGCUCCAUAGCCA 17 1964
BCLllA-1579 + CUAGAGAAAUCCAUGGC 17 1965
BCLllA-1580 + CCUAGAGAAAUCCAUGG 17 1966
BCLllA-1581 + UCCUAGAGAAAUCCAUG 17 1967
BCLllA-1582 + GCUCUCUAAGUCUCCUA 17 1968
BCLllA-1583 + CAGCUCUCUAAGUCUCC 17 1969
BCLllA-1584 + CCGGCCUGGGGACAGCG 17 1970
BCLllA-1585 + UAGGGCUGGGCCGGCCU 17 1971
BCLllA-1586 + AUAGGGCUGGGCCGGCC 17 1972
BCLllA-1587 + CAUAGGGCUGGGCCGGC 17 1973
BCLllA-1588 + GUAACCUUUGCAUAGGG 17 1974
BCLllA-1589 + U UGCAGUAACCU UUGCA 17 1975
BCLllA-1590 + GCGGCUUGCUACCUGGC 17 1976
BCLllA-1591 + GGCGGCU UGCUACCUGG 17 1977
BCLllA-1592 + GGGGGGGCGUCGCCAGG 17 1978
BCLllA-1593 + GGAGGGGGGGCGUCGCC 17 1979
BCLllA-1594 + GGGAGGGGGGGCGUCGC 17 1980
BCLllA-1595 + AUUGCAGAGGAGGGAGG 17 1981
BCLllA-1596 + GAUUGCAGAGGAGGGAG 17 1982
BCLllA-1597 + GGAUUGCAGAGGAGGGA 17 1983
BCLllA-1598 + CGGAUUGCAGAGGAGGG 17 1984
BCLllA-1599 + GCGGAUUGCAGAGGAGG 17 1985
BCLllA-1600 + GGGCGGAUUGCAGAGGA 17 1986
BCLllA-1601 + GGGGCGGAUUGCAGAGG 17 1987
BCLllA-1602 + AGGGGCGGAUUGCAGAG 17 1988
BCLllA-1603 + GGAGGGGCGGAUUGCAG 17 1989
BCLllA-1604 + AGGAGGGGCGGAUUGCA 17 1990
BCLllA-1605 + GGAGGAGGGGCGGAUUG 17 1991
BCLllA-1606 + GCUGGGAGGGAGGAGGG 17 1992
BCLllA-1607 + GGGGGCUGGGAGGGAGG 17 1993
BCLllA-1608 + CGGGGGCUGGGAGGGAG 17 1994
BCLllA-1609 + ACCGGGGGCUGGGAGGG 17 1995
BCLllA-1610 + GACCGGGGGCUGGGAGG 17 1996
BCLllA-1611 + U UGACCGGGGGCUGGGA 17 1997
BCLllA-1612 + CUUGACCGGGGGCUGGG 17 1998
BCLllA-1613 + ACU UGACCGGGGGCUGG 17 1999
BCLllA-1614 + GGACUUGACCGGGGGCU 17 2000
BCLllA-1615 + UGGACUUGACCGGGGGC 17 2001 BCLllA-1616 + UUGGACUUGACCGGGGG 17 2002
BCLllA-1617 + AUGACUUGGACUUGACC 17 2003
BCLllA-1618 + CAUGACUUGGACUUGAC 17 2004
BCLllA-1619 + GCAUGACUUGGACUUGA 17 2005
BCLllA-1620 + CGCAGAACUCGCAUGAC 17 2006
BCLllA-1621 + AUUUGAACGUCUUGCCG 17 2007
BCLllA-1622 + CCAGGUUGCUCUGAAAU 17 2008
BCLllA-1623 + UGCACCACCAGGUUGCU 17 2009
BCLllA-1624 + CGCACAGGUUGCACUUG 17 2010
BCLllA-1625 + CGCUUCAGCUUGCUGGC 17 2011
BCLllA-1626 + CGGACU UGACCGUCAUG 17 2012
BCLllA-1627 + UCGGACUUGACCGUCAU 17 2013
BCLllA-1628 + GUCGGACUUGACCGUCA 17 2014
BCLllA-1629 + CGUCGGACUUGACCGUC 17 2015
BCLllA-1630 + CGGUGGAGAGACCGUCG 17 2016
BCLllA-1631 + CCGGGGAGCUGGCGGUG 17 2017
BCLllA-1632 + U UCCGGGGAGCUGGCGG 17 2018
BCLllA-1633 + GUUCCGGGGAGCUGGCG 17 2019
BCLllA-1634 + GCUGGUGCCGGGUUCCG 17 2020
BCLllA-1635 + CGCUGGUGCCGGGU UCC 17 2021
BCLllA-1636 + UCGCUGGUGCCGGGUUC 17 2022
BCLllA-1637 + GUCGCUGGUGCCGGGUU 17 2023
BCLllA-1638 + CCACCAAGUCGCUGGUG 17 2024
BCLllA-1639 + ACU UGGCCACCACGGAC 17 2025
BCLllA-1640 + UCUUGAACUUGGCCACC 17 2026
BCLllA-1641 + UGGGGUCGUUCUCGCUC 17 2027
BCLllA-1642 + GUUCUCCGGGAUCAGGU 17 2028
BCLllA-1643 + CGUUCUCCGGGAUCAGG 17 2029
BCLllA-1644 + UCCUCGUCCCCGUUCUC 17 2030
BCLllA-1645 + CUCCUCGUCCCCGU UCU 17 2031
BCLllA-1646 + CCGCCUCCAGGCUCAGC 17 2032
BCLllA-1647 + GCCCACGACCGCGCCCC 17 2033
BCLllA-1648 + CCCUGCAUGACGUCGGG 17 2034
BCLllA-1649 + CCAUGCCCUGCAUGACG 17 2035
BCLllA-1650 + UGAAGUGCUGCAUGGAG 17 2036
BCLllA-1651 + CUCGCUGAAGUGCUGCA 17 2037
BCLllA-1652 + CCUCGCUGAAGUGCUGC 17 2038
BCLllA-1653 + CCUGGUGGAAGGCCUCG 17 2039
BCLllA-1654 + UCUCGCCCAGGACCUGG 17 2040
BCLllA-1655 + UUCUCGCCCAGGACCUG 17 2041
BCLllA-1656 + CGCUUAUGCUUCUCGCC 17 2042
BCLllA-1657 + GUCCGACUCGCCGGCCA 17 2043 BCLllA-1658 + CGAGGCCGACUCGCCCG 17 2044
BCLllA-1659 + CCGAGGCCGACUCGCCC 17 2045
BCLllA-1660 + CCCGAGGCCGACUCGCC 17 2046
BCLllA-1661 + CCCCGAGGCCGACUCGC 17 2047
BCLllA-1662 + CUU UUUGGACAGGCCCC 17 2048
BCLllA-1663 + UGCCCAGCAGCAGCUU U 17 2049
BCLllA-1664 + GAAGGGGCUCAGCGAGC 17 2050
BCLllA-1665 + AGAAGGGGCUCAGCGAG 17 2051
BCLllA-1666 + CUUAGAGAAGGGGCUCA 17 2052
BCLllA-1667 + CUUGAUGCGCUUAGAGA 17 2053
BCLllA-1668 + GCUUGAUGCGCUUAGAG 17 2054
BCLllA-1669 + CGAGCU UGAUGCGCUUA 17 2055
BCLllA-1670 + CUCGAGCU UGAUGCGCU 17 2056
BCLllA-1671 + GCAGGUCGAACUCCUUC 17 2057
BCLllA-1672 + UCGCGGCCGGGGGCAGG 17 2058
BCLllA-1673 + UGUUGGGCAUCGCGGCC 17 2059
BCLllA-1674 + GUGUUGGGCAUCGCGGC 17 2060
BCLllA-1675 + CGUGUUGGGCAUCGCGG 17 2061
BCLllA-1676 + AGUACACGUUCUCCGUG 17 2062
BCLllA-1677 + GUAGCCGGCGAGCCACU 17 2063
BCLllA-1678 + UGGAGGCCGCGUAGCCG 17 2064
BCLllA-1679 + GGGAUCUUUGAGCUGCC 17 2065
BCLllA-1680 + AGGGAUCUUUGAGCUGC 17 2066
BCLllA-1681 + AGCUAAGGAAGGGAUCU 17 2067
BCLllA-1682 + GUCUCCGAAGCUAAGGA 17 2068
BCLllA-1683 + AGUCUCCGAAGCUAAGG 17 2069
BCLllA-1684 + UGGAGUCUCCGAAGCUA 17 2070
BCLllA-1685 + CUGGAGUCUCCGAAGCU 17 2071
BCLllA-1686 + GCGAUUGUCUGGAGUCU 17 2072
BCLllA-1687 + GGCAAAAGGCGAUUGUC 17 2073
BCLllA-1688 + AGGCAAAAGGCGAUUGU 17 2074
BCLllA-1689 + CGAGGAGUGCUCCGACG 17 2075
BCLllA-1690 + CCGAGGAGUGCUCCGAC 17 2076
BCLllA-1691 + CUCCGAGGAGUGCUCCG 17 2077
BCLllA-1692 + CAAACUCCCGUUCUCCG 17 2078
BCLllA-1693 + GCAAACUCCCGUUCUCC 17 2079
BCLllA-1694 + GCGCAAACUCCCGUUCU 17 2080
BCLllA-1695 + GCUCCCCGGGCGGUGUG 17 2081
BCLllA-1696 + CAGCUCCCCGGGCGGUG 17 2082
BCLllA-1697 + CCAGCUCCCCGGGCGGU 17 2083
BCLllA-1698 + UCCCUCCGUCCAGCUCC 17 2084
BCLllA-1699 + UCCCGUGCCGCUGCGCC 17 2085 BCLllA-1700 + GGCCCGGACCACUAAUA 17 2086
BCLllA-1701 + GGGCCCGGACCACUAAU 17 2087
BCLllA-1702 + GCUGGGCCUGCCCGGGC 17 2088
BCLllA-1703 + UUUUGAGCUGGGCCUGC 17 2089
BCLllA-1704 + GUCUGCCCUCU UUUGAG 17 2090
BCLllA-1705 + GCUGCGUCUGCCCUCU U 17 2091
BCLllA-1706 - CCCCCAUUCGGCGUAGUACC 20 2092
BCLllA-1707 - CCCAUUCGGCGUAGUACCCA 20 2093
BCLllA-1708 - CUCAAGAUGUGUGGCAGUUU 20 2094
BCLllA-1709 - AGAUGUGUGGCAGUUUUCGG 20 2095
BCLllA-1710 - GAUGUGUGGCAGUUUUCGGA 20 2096
BCLllA-1711 - GGCAGUUUUCGGAUGGAAGC 20 2097
BCLllA-1712 - CAGU UUUCGGAUGGAAGCUC 20 2098
BCLllA-1713 - CCAUUCGGCGUAGUACC 17 2099
BCLllA-1714 - AUUCGGCGUAGUACCCA 17 2100
BCLllA-1715 - AAGAUGUGUGGCAGUU U 17 2101
BCLllA-1716 - UGUGUGGCAGUUUUCGG 17 2102
BCLllA-1717 - GUGUGGCAGUUU UCGGA 17 2103
BCLllA-1718 - AGUUUUCGGAUGGAAGC 17 2104
BCLllA-1719 - UUUUCGGAUGGAAGCUC 17 2105
BCLllA-1720 + ACGCCGAAUGGGGGUGUGUG 20 2106
BCLllA-1721 + ACUACGCCGAAUGGGGGUGU 20 2107
BCLllA-1722 + CUCUGGGUACUACGCCGAAU 20 2108
BCLllA-1723 + UCUCUGGGUACUACGCCGAA 20 2109
BCLllA-1724 + CUCUCUGGGUACUACGCCGA 20 2110
BCLllA-1725 + UGAGCUCUCUGGGUACUACG 20 2111
BCLllA-1726 + UGCCACACAUCUUGAGCUCU 20 2112
BCLllA-1727 + UCCGAAAACUGCCACACAUC 20 2113
BCLllA-1728 + AAGGGCUCUCGAGCUUCCAU 20 2114
BCLllA-1729 + CCGAAUGGGGGUGUGUG 17 2115
BCLllA-1730 + ACGCCGAAUGGGGGUGU 17 2116
BCLllA-1731 + UGGGUACUACGCCGAAU 17 2117
BCLllA-1732 + CUGGGUACUACGCCGAA 17 2118
BCLllA-1733 + UCUGGGUACUACGCCGA 17 2119
BCLllA-1734 + GCUCUCUGGGUACUACG 17 2120
BCLllA-1735 + CACACAUCUUGAGCUCU 17 2121
BCLllA-1736 + GAAAACUGCCACACAUC 17 2122
BCLllA-1737 + GGCUCUCGAGCUUCCAU 17 2123
Table IF provides exemplary targeting domains for knocking out the BCLllA gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 single- strand break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. When selecting gRNAs for use in a nickase pair, one gRNA targets a domain in the complementary strand and the second gRNA targets a domain in the non- complementary strand, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain targeting the same target position.
Table IF
Figure imgf000153_0001
Table 2A provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene by targeting within the lOOObp of sequence 3' of the start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., within lOOObp of sequence 3' of the start codon to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 2A
Figure imgf000154_0001
BCLllA-1789 - GGCGCGGGAGGGCAAGCGCG 20 2175
BCLllA-1790 - GGAGGGCAAGCGCGAGGAGC 20 2176
BCLllA-1791 - GCGCGAGGAGCCGGCACAAA 20 2177
BCLllA-1792 - GGAGCCGGCACAAAAGGCAG 20 2178
BCLllA-1793 - GAGCCGGCACAAAAGGCAGC 20 2179
BCLllA-1794 - GCGGGACAAACACCCACCUC 20 2180
BCLllA-1795 - GACAAACACCCACCUCUGGC 20 2181
BCLllA-1796 - CCACCUCUGGCCGGAACAAA 20 2182
BCLllA-1797 - CCUCUGGCCGGAACAAAAGG 20 2183
BCLllA-1798 - G G A ACAAAAG G CGG CAG U G C 20 2184
BCLllA-1799 - GCCGCGUCUCCCGUCCUUCC 20 2185
BCLllA-1800 - UCCCGUCCUUCCCGGUCCCA 20 2186
BCLllA-1801 - CACGGCUCUCCCCGUCGCCG 20 2187
BCLllA-1802 - CGGCCCCUCUCCCGACUCCG 20 2188
BCLllA-1803 - UCUCCCGACUCCGCGGACUC 20 2189
BCLllA-1804 - CUCCGCGGACUCAGGAGCGC 20 2190
BCLllA-1805 - UCCGCGGACUCAGGAGCGCC 20 2191
BCLllA-1806 - CCGCGGACUCAGGAGCGCCG 20 2192
BCLllA-1807 - CGCGGACUCAGGAGCGCCGG 20 2193
BCLllA-1808 - GUGCCACUUUCUCACUAUUG 20 2194
BCLllA-1809 - UGCCACUUUCUCACUAUUGU 20 2195
BCLllA-1810 - GCCACUUUCUCACUAUUGUG 20 2196
BCLllA-1811 - ACACUUGACCGUGAGCGCGC 20 2197
BCLllA-1812 - AGUCUCACCUCUUUUCUCCC 20 2198
BCLllA-1813 - GUCUCACCUCUUUUCUCCCC 20 2199
BCLllA-1814 - CCUACCCCCCCAUUUUCUUA 20 2200
BCLllA-1815 - CCCCAUUUUCUUACGGUGAG 20 2201
BCLllA-1816 - CCCAUUUUCUUACGGUGAGU 20 2202
BCLllA-1817 - CCCCACCAGCUCCCACCCCC 20 2203
BCLllA-1818 - UGUUCAUUAUUUUGCAAAAC 20 2204
BCLllA-1819 - UCAUUAUUUUGCAAAACUGG 20 2205
BCLllA-1820 - CAUUAUUUUGCAAAACUGGC 20 2206
BCLllA-1821 - AUUAUUUUGCAAAACUGGCG 20 2207
BCLllA-1822 - AUUUUGCAAAACUGGCGGGG 20 2208
BCLllA-1823 - UUUUGCAAAACUGGCGGGGC 20 2209
BCLllA-1824 - UUUGCAAAACUGGCGGGGCG 20 2210
BCLllA-1825 - UUGCAAAACUGGCGGGGCGG 20 2211
BCLllA-1826 - UGCAAAACUGGCGGGGCGGG 20 2212
BCLllA-1827 - GCAAAACUGGCGGGGCGGGG 20 2213
BCLllA-1828 - CAAAACUGGCGGGGCGGGGG 20 2214
BCLllA-1829 - CUGGCGGGGCGGGGGGGGAG 20 2215
BCLllA-1830 - U U U CG A A A AG AG AAA U A A AG 20 2216 BCLllA-1831 - CGAAAAGAGAAAUAAAGCGG 20 2217
BCLllA-1832 - AGAGAAAUAAAGCGGCGGAA 20 2218
BCLllA-1833 - G AAA U A A AG CG G CG G A A AG G 20 2219
BCLllA-1834 - AGCGGCGGAAAGGAGGAAAG 20 2220
BCLllA-1835 - GGCGGAAAGGAGGAAAGAGG 20 2221
BCLllA-1836 - UAAAAU U AAAU AAAAU U AAA 20 2222
BCLllA-1837 - CUGUCUCAAAAGUGCAUACA 20 2223
BCLllA-1838 - CAAAAGUGCAUACACGGCAA 20 2224
BCLllA-1839 - UACACGGCAAUGGUUCCAGA 20 2225
BCLllA-1840 - ACACGGCAAUGGUUCCAGAU 20 2226
BCLllA-1841 - CAAUGGUUCCAGAUGGGAUG 20 2227
BCLllA-1842 - AAUGGUUCCAGAUGGGAUGA 20 2228
BCLllA-1843 - AUCUCUUUUACCUCGACUCU 20 2229
BCLllA-1844 - UCUUUUACCUCGACUCUCGG 20 2230
BCLllA-1845 - AUAAUUAUUAUUACUAUUAU 20 2231
BCLllA-1846 - UAAUUAUUAUUACUAU UAUU 20 2232
BCLllA-1847 + UAAUAAUCACGAGAGCGCGC 20 2233
BCLllA-1848 + CAGGACUAGAAGCAAAAGCG 20 2234
BCLllA-1849 + AGGACUAGAAGCAAAAGCGA 20 2235
BCLllA-1850 + GGACUAGAAGCAAAAGCGAG 20 2236
BCLllA-1851 + GACUAGAAGCAAAAGCGAGG 20 2237
BCLllA-1852 + AGCAAAAGCGAGGGGGAGAG 20 2238
BCLllA-1853 + GCAAAAGCGAGGGGGAGAGA 20 2239
BCLllA-1854 + CAAAAGCGAGGGGGAGAGAG 20 2240
BCLllA-1855 + AG AAAAACCU CCG AG AG U CG 20 2241
BCLllA-1856 + AGUCGAGGUAAAAGAGAUAA 20 2242
BCLllA-1857 + GUCGAGGUAAAAGAGAUAAA 20 2243
BCLllA-1858 + U CG AGG U AAAAG AG AU AAAG 20 2244
BCLllA-1859 + CG AG G U A A A AG AG A U A A AG G 20 2245
BCLllA-1860 + GAAAAAACCCUCAUCCCAUC 20 2246
BCLllA-1861 + CUU UAUUUCUCUUU UCGAAA 20 2247
BCLllA-1862 + CAAAAUAAUGAACAAUGCUA 20 2248
BCLllA-1863 + GAACAACUCACAUGCAAACC 20 2249
BCLllA-1864 + AACAACUCACAUGCAAACCU 20 2250
BCLllA-1865 + ACAACUCACAUGCAAACCUG 20 2251
BCLllA-1866 + CAACUCACAUGCAAACCUGG 20 2252
BCLllA-1867 + CUCACAUGCAAACCUGGGGG 20 2253
BCLllA-1868 + UCACAUGCAAACCUGGGGGU 20 2254
BCLllA-1869 + GCAAACCUGGGGGUGGGAGC 20 2255
BCLllA-1870 + AACCUGGGGGUGGGAGCUGG 20 2256
BCLllA-1871 + ACCUGGGGGUGGGAGCUGGU 20 2257
BCLllA-1872 + CCUGGGGGUGGGAGCUGGUG 20 2258 BCLllA-1873 + GGGUGGGAGCUGGUGGGGAA 20 2259
BCLllA-1874 + GGUGGGAGCUGGUGGGGAAA 20 2260
BCLllA-1875 + GGGAGCUGGUGGGGAAAGGG 20 2261
BCLllA-1876 + U CCCACU CACCG U AAG AAAA 20 2262
BCLllA-1877 + CCCACU CACCG U AAG AAAAU 20 2263
BCLllA-1878 + CCACUCACCGUAAGAAAAUG 20 2264
BCLllA-1879 + CACUCACCGUAAGAAAAUGG 20 2265
BCLllA-1880 + ACUCACCGUAAGAAAAUGGG 20 2266
BCLllA-1881 + CUCACCGUAAGAAAAUGGGG 20 2267
BCLllA-1882 + CCGUAAGAAAAUGGGGGGGU 20 2268
BCLllA-1883 + CGUAAGAAAAUGGGGGGGUA 20 2269
BCLllA-1884 + AAGAAAAUGGGGGGGUAGGG 20 2270
BCLllA-1885 + AGAAAAUGGGGGGGUAGGGA 20 2271
BCLllA-1886 + CAAGUCUAAAAAACGAUUCC 20 2272
BCLllA-1887 + AAGUCUAAAAAACGAUUCCC 20 2273
BCLllA-1888 + AGUCUAAAAAACGAUUCCCG 20 2274
BCLllA-1889 + ACGAUUCCCGGGGAGAAAAG 20 2275
BCLllA-1890 + GGGGAGAAAAGAGGUGAGAC 20 2276
BCLllA-1891 + AAAGAGGUGAGACUGGCUUU 20 2277
BCLllA-1892 + U UUGGACACCAGCGCGCUCA 20 2278
BCLllA-1893 + GCUCACGGUCAAGUGUGCAG 20 2279
BCLllA-1894 + CUCACGGUCAAGUGUGCAGC 20 2280
BCLllA-1895 + ACGGUCAAGUGUGCAGCGGG 20 2281
BCLllA-1896 + UCCCCACAAUAGUGAGAAAG 20 2282
BCLllA-1897 + AUAGUGAGAAAGUGGCACUG 20 2283
BCLllA-1898 + GAGAAAGUGGCACUGUGGAA 20 2284
BCLllA-1899 + AGAAAGUGGCACUGUGGAAA 20 2285
BCLllA-1900 + GAAAGUGGCACUGUGGAAAG 20 2286
BCLllA-1901 + GCACUGUGGAAAGGGGCCCC 20 2287
BCLllA-1902 + CCCCGGCGCUCCUGAGUCCG 20 2288
BCLllA-1903 + CGCUCCUGAGUCCGCGGAGU 20 2289
BCLllA-1904 + GCUCCUGAGUCCGCGGAGUC 20 2290
BCLllA-1905 + UGAGUCCGCGGAGUCGGGAG 20 2291
BCLllA-1906 + GAGUCCGCGGAGUCGGGAGA 20 2292
BCLllA-1907 + AGUCCGCGGAGUCGGGAGAG 20 2293
BCLllA-1908 + CGGAGUCGGGAGAGGGGCCG 20 2294
BCLllA-1909 + CGGGAGAGGGGCCGCGGCGA 20 2295
BCLllA-1910 + GGGAGAGGGGCCGCGGCGAC 20 2296
BCLllA-1911 + GGAGAGGGGCCGCGGCGACG 20 2297
BCLllA-1912 + CGCGGCGACGGGGAGAGCCG 20 2298
BCLllA-1913 + GCGGCGACGGGGAGAGCCGU 20 2299
BCLllA-1914 + GACGGGGAGAGCCGUGGGAC 20 2300 BCLllA-1915 + ACGGGGAGAGCCGUGGGACC 20 2301
BCLllA-1916 + GGAGAGCCGUGGGACCGGGA 20 2302
BCLllA-1917 + AGCCGUGGGACCGGGAAGGA 20 2303
BCLllA-1918 + GCCGUGGGACCGGGAAGGAC 20 2304
BCLllA-1919 + ACCGGGAAGGACGGGAGACG 20 2305
BCLllA-1920 + GGAAGGACGGGAGACGCGGC 20 2306
BCLllA-1921 + GGCACUGCCGCCUU UUGUUC 20 2307
BCLllA-1922 + CCGCCUUUUGUUCCGGCCAG 20 2308
BCLllA-1923 + CCUU UUGUUCCGGCCAGAGG 20 2309
BCLllA-1924 + CUU UUGUUCCGGCCAGAGGU 20 2310
BCLllA-1925 + UGUCCCGCUGCCU UUUGUGC 20 2311
BCLllA-1926 + GCCGCCGCCGCCGCCGCCGA 20 2312
BCLllA-1927 + CCGCCGCCGCCGCCGCCGAA 20 2313
BCLllA-1928 + CGCCGCCGCCGCCGAAGGGC 20 2314
BCLllA-1929 + GCCGCCGAAGGGCAGGAGCU 20 2315
BCLllA-1930 + CCGCCGAAGGGCAGGAGCUA 20 2316
BCLllA-1931 + CGAAGGGCAGGAGCUAGGGC 20 2317
BCLllA-1932 + GAAGGGCAGGAGCUAGGGCC 20 2318
BCLllA-1933 + AAGGGCAGGAGCUAGGGCCG 20 2319
BCLllA-1934 + AGGGCAGGAGCUAGGGCCGG 20 2320
BCLllA-1935 + GCAGGAGCUAGGGCCGGGGG 20 2321
BCLllA-1936 + GGAGCUAGGGCCGGGGGAGG 20 2322
BCLllA-1937 + GCUAGGGCCGGGGGAGGAGG 20 2323
BCLllA-1938 + GGGCCGGGGGAGGAGGCGGC 20 2324
BCLllA-1939 + GGCCGGGGGAGGAGGCGGCC 20 2325
BCLllA-1940 + GCCGGGGGAGGAGGCGGCCG 20 2326
BCLllA-1941 + CCGGGGGAGGAGGCGGCCGG 20 2327
BCLllA-1942 + AGGAGGCGGCCGGGGGCACG 20 2328
BCLllA-1943 + GGAGGCGGCCGGGGGCACGC 20 2329
BCLllA-1944 + CGGCCGGGGGCACGCGGGAG 20 2330
BCLllA-1945 + GGCCGGGGGCACGCGGGAGA 20 2331
BCLllA-1946 + CGGGGGCACGCGGGAGAGGG 20 2332
BCLllA-1947 + GGGGGCACGCGGGAGAGGGA 20 2333
BCLllA-1948 + GGCACGCGGGAGAGGGAGGG 20 2334
BCLllA-1949 + GCACGCGGGAGAGGGAGGGA 20 2335
BCLllA-1950 + GGAGAGGGAGGGAGGGAGCC 20 2336
BCLllA-1951 + GAGCCCGGACUGCUGCCUCC 20 2337
BCLllA-1952 + AGCCCGGACUGCUGCCUCCU 20 2338
BCLllA-1953 + CCCUCCCGACCGAACCUCAG 20 2339
BCLllA-1954 + ACCGAACCUCAGAGGCAGCA 20 2340
BCLllA-1955 + AGAGGCAGCAAGGAGAAGAC 20 2341
BCLllA-1956 + A A A A U A A A A U AAA U A A AAC A 20 2342 BCLllA-1957 - UCUCCUUGCUGCCUCUG 17 2343
BCLllA-1958 - UUGCUGCCUCUGAGGUU 17 2344
BCLllA-1959 - UGCCUCUGAGGUUCGGU 17 2345
BCLllA-1960 - GCCUCUGAGGUUCGGUC 17 2346
BCLllA-1961 - UCUGAGGUUCGGUCGGG 17 2347
BCLllA-1962 - CUGAGGUUCGGUCGGGA 17 2348
BCLllA-1963 - UGAGGUUCGGUCGGGAG 17 2349
BCLllA-1964 - GGUUCGGUCGGGAGGGG 17 2350
BCLllA-1965 - GUUCGGUCGGGAGGGGA 17 2351
BCLllA-1966 - UCGGGAGGGGAGGGCAG 17 2352
BCLllA-1967 - GAGGGCAGCGGCAACCC 17 2353
BCLllA-1968 - GGCAGCGGCAACCCAGG 17 2354
BCLllA-1969 - CCCAG G AG G CAG C AG U C 17 2355
BCLllA-1970 - CCAGGAGGCAGCAGUCC 17 2356
BCLllA-1971 - CCUCUCCCGCGUGCCCC 17 2357
BCLllA-1972 - CCGGCCGCCUCCUCCCC 17 2358
BCLllA-1973 - CCCUAGCUCCUGCCCUU 17 2359
BCLllA-1974 - UAGCUCCUGCCCUUCGG 17 2360
BCLllA-1975 - CUCCUGCCCUUCGGCGG 17 2361
BCLllA-1976 - CUGCCCUUCGGCGGCGG 17 2362
BCLllA-1977 - CCCUUCGGCGGCGGCGG 17 2363
BCLllA-1978 - UUCGGCGGCGGCGGCGG 17 2364
BCLllA-1979 - GGCGGCGGCGGCGGCGG 17 2365
BCLllA-1980 - CGGCGGCGGCGGCGGCG 17 2366
BCLllA-1981 - GGCGGCGGCGGCGGCGC 17 2367
BCLllA-1982 - GGCGGCGGCGGCGCGGG 17 2368
BCLllA-1983 - GCGGCGGCGGCGCGGGA 17 2369
BCLllA-1984 - GCGGGAGGGCAAGCGCG 17 2370
BCLllA-1985 - GGGCAAGCGCGAGGAGC 17 2371
BCLllA-1986 - CGAGGAGCCGGCACAAA 17 2372
BCLllA-1987 - G CCGG CAC AAAAG G CAG 17 2373
BCLllA-1988 - CCGGCACAAAAGGCAGC 17 2374
BCLllA-1989 - GGACAAACACCCACCUC 17 2375
BCLllA-1990 - AAACACCCACCUCUGGC 17 2376
BCLllA-1991 - CCUCUGGCCGGAACAAA 17 2377
BCLllA-1992 - C U GG CCG G A ACAAAAG G 17 2378
BCLllA-1993 - A C A A A AG GCGGCAGUGC 17 2379
BCLllA-1994 - GCGUCUCCCGUCCUUCC 17 2380
BCLllA-1995 - CGUCCUUCCCGGUCCCA 17 2381
BCLllA-1996 - GGCUCUCCCCGUCGCCG 17 2382
BCLllA-1997 - CCCCUCUCCCGACUCCG 17 2383
BCLllA-1998 - CCCGACUCCGCGGACUC 17 2384 BCLllA-1999 - CGCGGACUCAGGAGCGC 17 2385
BCLllA-2000 - GCGGACUCAGGAGCGCC 17 2386
BCLllA-2001 - CGGACUCAGGAGCGCCG 17 2387
BCLllA-2002 - GGACUCAGGAGCGCCGG 17 2388
BCLllA-2003 - CCACUUUCUCACUAUUG 17 2389
BCLllA-2004 - CACUUUCUCACUAUUGU 17 2390
BCLllA-2005 - ACUUUCUCACUAUUGUG 17 2391
BCLllA-2006 - CUUGACCGUGAGCGCGC 17 2392
BCLllA-2007 - CUCACCUCUUUUCUCCC 17 2393
BCLllA-2008 - UCACCUCUUUUCUCCCC 17 2394
BCLllA-2009 - ACCCCCCCAUUUUCUUA 17 2395
BCLllA-2010 - CAUUUUCUUACGGUGAG 17 2396
BCLllA-2011 - AUUUUCUUACGGUGAGU 17 2397
BCLllA-2012 - CACCAGCUCCCACCCCC 17 2398
BCLllA-2013 - U CAU U AU U U UG CAAAAC 17 2399
BCLllA-2014 - UUAUUUUGCAAAACUGG 17 2400
BCLllA-2015 - UAUUUUGCAAAACUGGC 17 2401
BCLllA-2016 - AUUUUGCAAAACUGGCG 17 2402
BCLllA-2017 - UUGCAAAACUGGCGGGG 17 2403
BCLllA-2018 - UGCAAAACUGGCGGGGC 17 2404
BCLllA-2019 - GCAAAACUGGCGGGGCG 17 2405
BCLllA-2020 - CAAAACUGGCGGGGCGG 17 2406
BCLllA-2021 - AAAACUGGCGGGGCGGG 17 2407
BCLllA-2022 - AAACUGGCGGGGCGGGG 17 2408
BCLllA-2023 - AACUGGCGGGGCGGGGG 17 2409
BCLllA-2024 - GCGGGGCGGGGGGGGAG 17 2410
BCLllA-2025 - CG A A A AG AG A A A U A A AG 17 2411
BCLllA-2026 - AAAGAGAAAUAAAGCGG 17 2412
BCLllA-2027 - G AAA U A A AG CG G CG G A A 17 2413
BCLllA-2028 - A U A A AG CG G CG G A A AG G 17 2414
BCLllA-2029 - GGCGGAAAGGAGGAAAG 17 2415
BCLllA-2030 - GGAAAGGAGGAAAGAGG 17 2416
BCLllA-2031 - AAU U AAAU AAAAU U AAA 17 2417
BCLllA-2032 - U C U C A A A AG U G C A U AC A 17 2418
BCLllA-2033 - AAGUGCAUACACGGCAA 17 2419
BCLllA-2034 - ACGGCAAUGGUUCCAGA 17 2420
BCLllA-2035 - CGGCAAUGGUUCCAGAU 17 2421
BCLllA-2036 - UGGUUCCAGAUGGGAUG 17 2422
BCLllA-2037 - GGUUCCAGAUGGGAUGA 17 2423
BCLllA-2038 - UCUUUUACCUCGACUCU 17 2424
BCLllA-2039 - UUUACCUCGACUCUCGG 17 2425
BCLllA-2040 - AUUAUUAUUACUAUUAU 17 2426 BCLllA-2041 - U UAUUAUUACUAUUAU U 17 2427
BCLllA-2042 + UAAUCACGAGAGCGCGC 17 2428
BCLllA-2043 + G ACU AG AAG CAAAAG CG 17 2429
BCLllA-2044 + ACU AG AAG CAAAAG CG A 17 2430
BCLllA-2045 + CUAGAAGCAAAAGCGAG 17 2431
BCLllA-2046 + U AG AAG CAAAAG CG AGG 17 2432
BCLllA-2047 + AAAAGCGAGGGGGAGAG 17 2433
BCLllA-2048 + AAAGCGAGGGGGAGAGA 17 2434
BCLllA-2049 + AAGCGAGGGGGAGAGAG 17 2435
BCLllA-2050 + AAAACCU CCG AG AG U CG 17 2436
BCLllA-2051 + CG AG G U A A A AG AG A U A A 17 2437
BCLllA-2052 + G AGG U AAAAG AG AU AAA 17 2438
BCLllA-2053 + AG G U A A A AG AG A U A A AG 17 2439
BCLllA-2054 + G G U A A A AG AG A U A A AG G 17 2440
BCLllA-2055 + AAAACCCUCAUCCCAUC 17 2441
BCLllA-2056 + UAUUUCUCUUUUCGAAA 17 2442
BCLllA-2057 + AAUAAUGAACAAUGCUA 17 2443
BCLllA-2058 + CAACUCACAUGCAAACC 17 2444
BCLllA-2059 + AAC U CAC AU G CAAACCU 17 2445
BCLllA-2060 + ACUCACAUGCAAACCUG 17 2446
BCLllA-2061 + CUCACAUGCAAACCUGG 17 2447
BCLllA-2062 + ACAUGCAAACCUGGGGG 17 2448
BCLllA-2063 + CAUGCAAACCUGGGGGU 17 2449
BCLllA-2064 + AACCUGGGGGUGGGAGC 17 2450
BCLllA-2065 + CUGGGGGUGGGAGCUGG 17 2451
BCLllA-2066 + UGGGGGUGGGAGCUGGU 17 2452
BCLllA-2067 + GGGGGUGGGAGCUGGUG 17 2453
BCLllA-2068 + UGGGAGCUGGUGGGGAA 17 2454
BCLllA-2069 + GGGAGCUGGUGGGGAAA 17 2455
BCLllA-2070 + AGCUGGUGGGGAAAGGG 17 2456
BCLllA-2071 + CACU CACCG U AAG AAAA 17 2457
BCLllA-2072 + ACUCACCGUAAGAAAAU 17 2458
BCLllA-2073 + CUCACCGUAAGAAAAUG 17 2459
BCLllA-2074 + U C A CCG U A AG AAAA U G G 17 2460
BCLllA-2075 + CACCG U AAG AAAAUGGG 17 2461
BCLllA-2076 + ACCGUAAGAAAAUGGGG 17 2462
BCLllA-2077 + UAAGAAAAUGGGGGGGU 17 2463
BCLllA-2078 + AAGAAAAUGGGGGGGUA 17 2464
BCLllA-2079 + AAAAUGGGGGGGUAGGG 17 2465
BCLllA-2080 + AAAUGGGGGGGUAGGGA 17 2466
BCLllA-2081 + GUCUAAAAAACGAUUCC 17 2467
BCLllA-2082 + U CU AAAAAACG AU U CCC 17 2468 BCLllA-2083 + CUAAAAAACGAUUCCCG 17 2469
BCLllA-2084 + AUUCCCGGGGAGAAAAG 17 2470
BCLllA-2085 + GAGAAAAGAGGUGAGAC 17 2471
BCLllA-2086 + GAGGUGAGACUGGCU UU 17 2472
BCLllA-2087 + GGACACCAGCGCGCUCA 17 2473
BCLllA-2088 + C ACG G U CAAG U G U G C AG 17 2474
BCLllA-2089 + ACGGUCAAGUGUGCAGC 17 2475
BCLllA-2090 + GUCAAGUGUGCAGCGGG 17 2476
BCLllA-2091 + CCACAAUAGUGAGAAAG 17 2477
BCLllA-2092 + GUGAGAAAGUGGCACUG 17 2478
BCLllA-2093 + AAAGUGGCACUGUGGAA 17 2479
BCLllA-2094 + AAGUGGCACUGUGGAAA 17 2480
BCLllA-2095 + AGUGGCACUGUGGAAAG 17 2481
BCLllA-2096 + CUGUGGAAAGGGGCCCC 17 2482
BCLllA-2097 + CGGCGCUCCUGAGUCCG 17 2483
BCLllA-2098 + UCCUGAGUCCGCGGAGU 17 2484
BCLllA-2099 + CCUGAGUCCGCGGAGUC 17 2485
BCLllA-2100 + GUCCGCGGAGUCGGGAG 17 2486
BCLllA-2101 + UCCGCGGAGUCGGGAGA 17 2487
BCLllA-2102 + CCGCGGAGUCGGGAGAG 17 2488
BCLllA-2103 + AGUCGGGAGAGGGGCCG 17 2489
BCLllA-2104 + GAGAGGGGCCGCGGCGA 17 2490
BCLllA-2105 + AGAGGGGCCGCGGCGAC 17 2491
BCLllA-2106 + GAGGGGCCGCGGCGACG 17 2492
BCLllA-2107 + GGCGACGGGGAGAGCCG 17 2493
BCLllA-2108 + GCGACGGGGAGAGCCGU 17 2494
BCLllA-2109 + GGGGAGAGCCGUGGGAC 17 2495
BCLllA-2110 + GGGAGAGCCGUGGGACC 17 2496
BCLllA-2111 + GAGCCGUGGGACCGGGA 17 2497
BCLllA-2112 + CGUGGGACCGGGAAGGA 17 2498
BCLllA-2113 + GUGGGACCGGGAAGGAC 17 2499
BCLllA-2114 + GGGAAGGACGGGAGACG 17 2500
BCLllA-2115 + AGGACGGGAGACGCGGC 17 2501
BCLllA-2116 + ACUGCCGCCUU UUGUUC 17 2502
BCLllA-2117 + CCUU UUGUUCCGGCCAG 17 2503
BCLllA-2118 + U UUGUUCCGGCCAGAGG 17 2504
BCLllA-2119 + U UGUUCCGGCCAGAGGU 17 2505
BCLllA-2120 + CCCGCUGCCUUUUGUGC 17 2506
BCLllA-2121 + GCCGCCGCCGCCGCCGA 17 2507
BCLllA-2122 + CCGCCGCCGCCGCCGAA 17 2508
BCLllA-2123 + CGCCGCCGCCGAAGGGC 17 2509
BCLllA-2124 + GCCGAAGGGCAGGAGCU 17 2510 BCLllA-2125 + CCGAAGGGCAGGAGCUA 17 2511
BCLllA-2126 + AGGGCAGGAGCUAGGGC 17 2512
BCLllA-2127 + GGGCAGGAGCUAGGGCC 17 2513
BCLllA-2128 + GGCAGGAGCUAGGGCCG 17 2514
BCLllA-2129 + GCAGGAGCUAGGGCCGG 17 2515
BCLllA-2130 + GGAGCUAGGGCCGGGGG 17 2516
BCLllA-2131 + GCUAGGGCCGGGGGAGG 17 2517
BCLllA-2132 + AGGGCCGGGGGAGGAGG 17 2518
BCLllA-2133 + CCGGGGGAGGAGGCGGC 17 2519
BCLllA-2134 + CGGGGGAGGAGGCGGCC 17 2520
BCLllA-2135 + GGGGGAGGAGGCGGCCG 17 2521
BCLllA-2136 + GGGGAGGAGGCGGCCGG 17 2522
BCLllA-2137 + AGGCGGCCGGGGGCACG 17 2523
BCLllA-2138 + GGCGGCCGGGGGCACGC 17 2524
BCLllA-2139 + CCGGGGGCACGCGGGAG 17 2525
BCLllA-2140 + CGGGGGCACGCGGGAGA 17 2526
BCLllA-2141 + GGGCACGCGGGAGAGGG 17 2527
BCLllA-2142 + GGCACGCGGGAGAGGGA 17 2528
BCLllA-2143 + ACGCGGGAGAGGGAGGG 17 2529
BCLllA-2144 + CGCGGGAGAGGGAGGGA 17 2530
BCLllA-2145 + GAGGGAGGGAGGGAGCC 17 2531
BCLllA-2146 + CCCGGACUGCUGCCUCC 17 2532
BCLllA-2147 + CCGGACUGCUGCCUCCU 17 2533
BCLllA-2148 + UCCCGACCGAACCUCAG 17 2534
BCLllA-2149 + G AACCU CAG AGG CAG CA 17 2535
BCLllA-2150 + G G CAG CAAG G AG AAG AC 17 2536
BCLllA-2151 + AUAAAAUAAAUAAAACA 17 2537
Table 2B provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene by targeting within the lOOObp of sequence 3' of the start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., within lOOObp of sequence 3' of the start codon to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 2B S. aureus gRNA targets for BCLllA knockdown
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-2152 - CAGUCUUCUCCU UGCUGCCU 20 2138
BCLllA-2153 - U UGCUGCCUCUGAGGU UCGG 20 2139
BCLllA-2154 - UGCUGCCUCUGAGGUUCGGU 20 2140
BCLllA-2155 - GCUGCCUCUGAGGUUCGGUC 20 2141
BCLllA-2156 - UGCCUCUGAGGUUCGGUCGG 20 2142
BCLllA-2157 - GCCUCUGAGGUUCGGUCGGG 20 2143
BCLllA-2158 - CCUCUGAGGUUCGGUCGGGA 20 2144
BCLllA-2159 - CUCUGAGGUUCGGUCGGGAG 20 2145
BCLllA-2160 - CUGAGGUUCGGUCGGGAGGG 20 2146
BCLllA-2161 - AGGGGAGGGCAGCGGCAACC 20 2147
BCLllA-2162 - GGGGAGGGCAGCGGCAACCC 20 2148
BCLllA-2163 - GCAACCCAGGAGGCAGCAGU 20 2149
BCLllA-2164 - GCGGCGGCGGCGGCGGCGGC 20 2150
BCLllA-2165 - CGGCGGCGGCGGCGGCGGCG 20 2151
BCLllA-2166 - GGCGGCGGCGGCGGCGGCGC 20 2152
BCLllA-2167 - CGGCGGCGGCGGCGGCGCGG 20 2153
BCLllA-2168 - GGCGGCGCGGGAGGGCAAGC 20 2154
BCLllA-2169 - CGGCGCGGGAGGGCAAGCGC 20 2155
BCLllA-2170 - GGCGCGGGAGGGCAAGCGCG 20 2156
BCLllA-2171 - AGGAGCCGGCACAAAAGGCA 20 2157
BCLllA-2172 - GGAGCCGGCACAAAAGGCAG 20 2158
BCLllA-2173 - GGACAAACACCCACCUCUGG 20 2159
BCLllA-2174 - GACAAACACCCACCUCUGGC 20 2160
BCLllA-2175 - GCGGCCCCUCUCCCGACUCC 20 2161
BCLllA-2176 - CUCUCCCGACUCCGCGGACU 20 2162
BCLllA-2177 - UCUCCCGACUCCGCGGACUC 20 2163
BCLllA-2178 - ACUCCGCGGACUCAGGAGCG 20 2164
BCLllA-2179 - CUCCGCGGACUCAGGAGCGC 20 2165
BCLllA-2180 - UCCGCGGACUCAGGAGCGCC 20 2166
BCLllA-2181 - AGUGCCACUU UCUCACUAUU 20 2167
BCLllA-2182 - GUGCCACU UUCUCACUAUUG 20 2168
BCLllA-2183 - UGCCACUU UCUCACUAUUGU 20 2169
BCLllA-2184 - CUCCCGCUGCACACUUGACC 20 2170
BCLllA-2185 - CAGUCUCACCUCUUUUCUCC 20 2171
BCLllA-2186 - AGUCUCACCUCUUU UCUCCC 20 2172
BCLllA-2187 - GUCUCACCUCUU UUCUCCCC 20 2173
BCLllA-2188 - UACCCCCCCAUUU UCUUACG 20 2174
BCLllA-2189 - CCCCCAUUUUCUUACGGUGA 20 2175
BCLllA-2190 - CCCCAUU UUCUUACGGUGAG 20 2176 BCLllA-2191 - CCCAUUUUCUUACGGUGAGU 20 2177
BCLllA-2192 - UCCCACCCCCAGGUUUGCAU 20 2178
BCLllA-2193 - UUCAUUAUUUUGCAAAACUG 20 2179
BCLllA-2194 - UCAUUAUUUUGCAAAACUGG 20 2180
BCLllA-2195 - UAUUUUGCAAAACUGGCGGG 20 2181
BCLllA-2196 - AUUUUGCAAAACUGGCGGGG 20 2182
BCLllA-2197 - UUUUGCAAAACUGGCGGGGC 20 2183
BCLllA-2198 - UUUGCAAAACUGGCGGGGCG 20 2184
BCLllA-2199 - UUGCAAAACUGGCGGGGCGG 20 2185
BCLllA-2200 - UGCAAAACUGGCGGGGCGGG 20 2186
BCLllA-2201 - GCAAAACUGGCGGGGCGGGG 20 2187
BCLllA-2202 - CAAAACUGGCGGGGCGGGGG 20 2188
BCLllA-2203 - ACUGGCGGGGCGGGGGGGGA 20 2189
BCLllA-2204 - CUGGCGGGGCGGGGGGGGAG 20 2190
BCLllA-2205 - UGGAAUCAUUGCAUUCCUUU 20 2191
BCLllA-2206 - UCAUUGCAUUCCUUUUCGAA 20 2192
BCLllA-2207 - AUUGCAUUCCUUUUCGAAAA 20 2193
BCLllA-2208 - UCGAAAAGAGAAAUAAAGCG 20 2194
BCLllA-2209 - CGAAAAGAGAAAUAAAGCGG 20 2195
BCLllA-2210 - AAGAGAAAUAAAGCGGCGGA 20 2196
BCLllA-2211 - AGAGAAAUAAAGCGGCGGAA 20 2197
BCLllA-2212 - AGAAAUAAAGCGGCGGAAAG 20 2198
BCLllA-2213 - G AAA U A A AG CG G CG G A A AG G 20 2199
BCLllA-2214 - UAAAGCGGCGGAAAGGAGGA 20 2200
BCLllA-2215 - AAGCGGCGGAAAGGAGGAAA 20 2201
BCLllA-2216 - AGCGGCGGAAAGGAGGAAAG 20 2202
BCLllA-2217 - CGGCGGAAAGGAGGAAAGAG 20 2203
BCLllA-2218 - GGCGGAAAGGAGGAAAGAGG 20 2204
BCLllA-2219 - AUACACGGCAAUGGUUCCAG 20 2205
BCLllA-2220 - UACACGGCAAUGGUUCCAGA 20 2206
BCLllA-2221 - CGGCAAUGGUUCCAGAUGGG 20 2207
BCLllA-2222 - GCAAUGGUUCCAGAUGGGAU 20 2208
BCLllA-2223 - UAUCUCUUUUACCUCGACUC 20 2209
BCLllA-2224 - AUCUCUUUUACCUCGACUCU 20 2210
BCLllA-2225 - GACUCUCGGAGGUUUUUCUC 20 2211
BCLllA-2226 - AAUAAUUAUUAUUACUAUUA 20 2212
BCLllA-2227 - ACUAUUAUUGGGUUACUUAC 20 2213
BCLllA-2228 - UAUUAUUGGGUUACUUACGC 20 2214
BCLllA-2229 - UCUUCUCCUUGCUGCCU 17 2215
BCLllA-2230 - CUGCCUCUGAGGUUCGG 17 2216
BCLllA-2231 - UGCCUCUGAGGUUCGGU 17 2217
BCLllA-2232 - GCCUCUGAGGUUCGGUC 17 2218 BCLllA-2233 - CUCUGAGGUUCGGUCGG 17 2219
BCLllA-2234 - UCUGAGGUUCGGUCGGG 17 2220
BCLllA-2235 - CUGAGGUUCGGUCGGGA 17 2221
BCLllA-2236 - UGAGGUUCGGUCGGGAG 17 2222
BCLllA-2237 - AGGUUCGGUCGGGAGGG 17 2223
BCLllA-2238 - GGAGGGCAGCGGCAACC 17 2224
BCLllA-2239 - GAGGGCAGCGGCAACCC 17 2225
BCLllA-2240 - ACCCAGGAGGCAGCAGU 17 2226
BCLllA-2241 - GCGGCGGCGGCGGCGGC 17 2227
BCLllA-2242 - CGGCGGCGGCGGCGGCG 17 2228
BCLllA-2243 - GGCGGCGGCGGCGGCGC 17 2229
BCLllA-2244 - CGGCGGCGGCGGCGCGG 17 2230
BCLllA-2245 - GGCGCGGGAGGGCAAGC 17 2231
BCLllA-2246 - CGCGGGAGGGCAAGCGC 17 2232
BCLllA-2247 - GCGGGAGGGCAAGCGCG 17 2233
BCLllA-2248 - AG CCGG CAC AAAAG G C A 17 2234
BCLllA-2249 - G CCGG CAC AAAAG G C AG 17 2235
BCLllA-2250 - CAAACACCCACCUCUGG 17 2236
BCLllA-2251 - AAACACCCACCUCUGGC 17 2237
BCLllA-2252 - GCCCCUCUCCCGACUCC 17 2238
BCLllA-2253 - UCCCGACUCCGCGGACU 17 2239
BCLllA-2254 - CCCGACUCCGCGGACUC 17 2240
BCLllA-2255 - CCGCGGACUCAGGAGCG 17 2241
BCLllA-2256 - CGCGGACUCAGGAGCGC 17 2242
BCLllA-2257 - GCGGACUCAGGAGCGCC 17 2243
BCLllA-2258 - GCCACUUUCUCACUAUU 17 2244
BCLllA-2259 - CCACUUUCUCACUAUUG 17 2245
BCLllA-2260 - CACUUUCUCACUAUUGU 17 2246
BCLllA-2261 - CCGCUGCACACUUGACC 17 2247
BCLllA-2262 - UCUCACCUCUUUUCUCC 17 2248
BCLllA-2263 - CUCACCUCUUUUCUCCC 17 2249
BCLllA-2264 - UCACCUCUUUUCUCCCC 17 2250
BCLllA-2265 - CCCCCCAUUUUCUUACG 17 2251
BCLllA-2266 - CCAUUUUCUUACGGUGA 17 2252
BCLllA-2267 - CAUUUUCUUACGGUGAG 17 2253
BCLllA-2268 - AUUUUCUUACGGUGAGU 17 2254
BCLllA-2269 - CACCCCCAGGUUUGCAU 17 2255
BCLllA-2270 - AUUAUUUUGCAAAACUG 17 2256
BCLllA-2271 - UUAUUUUGCAAAACUGG 17 2257
BCLllA-2272 - UUUGCAAAACUGGCGGG 17 2258
BCLllA-2273 - UUGCAAAACUGGCGGGG 17 2259
BCLllA-2274 - UGCAAAACUGGCGGGGC 17 2260 BCLllA-2275 - GCAAAACUGGCGGGGCG 17 2261
BCLllA-2276 - CAAAACUGGCGGGGCGG 17 2262
BCLllA-2277 - AAAACUGGCGGGGCGGG 17 2263
BCLllA-2278 - AAACUGGCGGGGCGGGG 17 2264
BCLllA-2279 - AACUGGCGGGGCGGGGG 17 2265
BCLllA-2280 - GGCGGGGCGGGGGGGGA 17 2266
BCLllA-2281 - GCGGGGCGGGGGGGGAG 17 2267
BCLllA-2282 - AAUCAUUGCAUUCCUUU 17 2268
BCLllA-2283 - UUGCAUUCCUUUUCGAA 17 2269
BCLllA-2284 - GCAUUCCUUUUCGAAAA 17 2270
BCLllA-2285 - A A A AG AG A A A U A A AG CG 17 2271
BCLllA-2286 - AAAGAGAAAUAAAGCGG 17 2272
BCLllA-2287 - AGAAAUAAAGCGGCGGA 17 2273
BCLllA-2288 - G AAA U A A AG CG G CG G A A 17 2274
BCLllA-2289 - AAUAAAGCGGCGGAAAG 17 2275
BCLllA-2290 - A U A A AG CG G CG G A A AG G 17 2276
BCLllA-2291 - AGCGGCGGAAAGGAGGA 17 2277
BCLllA-2292 - CGGCGGAAAGGAGGAAA 17 2278
BCLllA-2293 - GGCGGAAAGGAGGAAAG 17 2279
BCLllA-2294 - CGGAAAGGAGGAAAGAG 17 2280
BCLllA-2295 - GGAAAGGAGGAAAGAGG 17 2281
BCLllA-2296 - CACGGCAAUGGUUCCAG 17 2282
BCLllA-2297 - ACGGCAAUGGUUCCAGA 17 2283
BCLllA-2298 - CAAUGGUUCCAGAUGGG 17 2284
BCLllA-2299 - AUGGUUCCAGAUGGGAU 17 2285
BCLllA-2300 - CUCUUUUACCUCGACUC 17 2286
BCLllA-2301 - UCUUUUACCUCGACUCU 17 2287
BCLllA-2302 - UCUCGGAGGUUUUUCUC 17 2288
BCLllA-2303 - AAUUAUUAUUACUAUUA 17 2289
BCLllA-2304 - AUUAUUGGGUUACUUAC 17 2290
BCLllA-2305 - UAUUGGGUUACUUACGC 17 2291
BCLllA-2306 + CGAACCUCAGAGGCAGCAAG 20 2292
BCLllA-2307 + ACCGAACCUCAGAGGCAGCA 20 2293
BCLllA-2308 + GACCGAACCUCAGAGGCAGC 20 2294
BCLllA-2309 + CUCCCCUCCCGACCGAACCU 20 2295
BCLllA-2310 + CCGCUGCCCUCCCCUCCCGA 20 2296
BCLllA-2311 + GGAGCCCGGACUGCUGCCUC 20 2297
BCLllA-2312 + GGGAGAGGGAGGGAGGGAGC 20 2298
BCLllA-2313 + GCACGCGGGAGAGGGAGGGA 20 2299
BCLllA-2314 + GGCACGCGGGAGAGGGAGGG 20 2300
BCLllA-2315 + GGGCACGCGGGAGAGGGAGG 20 2301
BCLllA-2316 + GGGGGCACGCGGGAGAGGGA 20 2302 BCLllA-2317 + CGGGGGCACGCGGGAGAGGG 20 2303
BCLllA-2318 + CCGGGGGCACGCGGGAGAGG 20 2304
BCLllA-2319 + GGCCGGGGGCACGCGGGAGA 20 2305
BCLllA-2320 + CGGCCGGGGGCACGCGGGAG 20 2306
BCLllA-2321 + GCGGCCGGGGGCACGCGGGA 20 2307
BCLllA-2322 + AGGCGGCCGGGGGCACGCGG 20 2308
BCLllA-2323 + GGAGGCGGCCGGGGGCACGC 20 2309
BCLllA-2324 + AGGAGGCGGCCGGGGGCACG 20 2310
BCLllA-2325 + GAGGAGGCGGCCGGGGGCAC 20 2311
BCLllA-2326 + GGCCGGGGGAGGAGGCGGCC 20 2312
BCLllA-2327 + GGGCCGGGGGAGGAGGCGGC 20 2313
BCLllA-2328 + AGGGCCGGGGGAGGAGGCGG 20 2314
BCLllA-2329 + GCAGGAGCUAGGGCCGGGGG 20 2315
BCLllA-2330 + GGCAGGAGCUAGGGCCGGGG 20 2316
BCLllA-2331 + AGGGCAGGAGCUAGGGCCGG 20 2317
BCLllA-2332 + AAGGGCAGGAGCUAGGGCCG 20 2318
BCLllA-2333 + GAAGGGCAGGAGCUAGGGCC 20 2319
BCLllA-2334 + CGAAGGGCAGGAGCUAGGGC 20 2320
BCLllA-2335 + CCGAAGGGCAGGAGCUAGGG 20 2321
BCLllA-2336 + CGCCGCCGAAGGGCAGGAGC 20 2322
BCLllA-2337 + CGCCGCCGCCGCCGAAGGGC 20 2323
BCLllA-2338 + CCGCCGCCGCCGCCGAAGGG 20 2324
BCLllA-2339 + CGCCGCCGCCGCCGCCGCCG 20 2325
BCLllA-2340 + CGCCGCCGCCGCCGCCGCCG 20 2326
BCLllA-2341 + GCCUUUUGUUCCGGCCAGAG 20 2327
BCLllA-2342 + CUGCCGCCUUU UGUUCCGGC 20 2328
BCLllA-2343 + GCCGUGGGACCGGGAAGGAC 20 2329
BCLllA-2344 + AGCCGUGGGACCGGGAAGGA 20 2330
BCLllA-2345 + GAGCCGUGGGACCGGGAAGG 20 2331
BCLllA-2346 + GGGAGAGCCGUGGGACCGGG 20 2332
BCLllA-2347 + ACGGGGAGAGCCGUGGGACC 20 2333
BCLllA-2348 + GACGGGGAGAGCCGUGGGAC 20 2334
BCLllA-2349 + CGACGGGGAGAGCCGUGGGA 20 2335
BCLllA-2350 + CGCGGCGACGGGGAGAGCCG 20 2336
BCLllA-2351 + CCGCGGCGACGGGGAGAGCC 20 2337
BCLllA-2352 + AGAGGGGCCGCGGCGACGGG 20 2338
BCLllA-2353 + GGAGAGGGGCCGCGGCGACG 20 2339
BCLllA-2354 + GGGAGAGGGGCCGCGGCGAC 20 2340
BCLllA-2355 + CGGGAGAGGGGCCGCGGCGA 20 2341
BCLllA-2356 + UCGGGAGAGGGGCCGCGGCG 20 2342
BCLllA-2357 + UGAGUCCGCGGAGUCGGGAG 20 2343
BCLllA-2358 + CUGAGUCCGCGGAGUCGGGA 20 2344 BCLllA-2359 + UCCUGAGUCCGCGGAGUCGG 20 2345
BCLllA-2360 + GCUCCUGAGUCCGCGGAGUC 20 2346
BCLllA-2361 + CGCUCCUGAGUCCGCGGAGU 20 2347
BCLllA-2362 + GCGCUCCUGAGUCCGCGGAG 20 2348
BCLllA-2363 + CCCCGGCGCUCCUGAGUCCG 20 2349
BCLllA-2364 + CCCCCGGCGCUCCUGAGUCC 20 2350
BCLllA-2365 + GAAAGGGGCCCCCGGCGCUC 20 2351
BCLllA-2366 + GAGAAAGUGGCACUGUGGAA 20 2352
BCLllA-2367 + UGAGAAAGUGGCACUGUGGA 20 2353
BCLllA-2368 + AUAGUGAGAAAGUGGCACUG 20 2354
BCLllA-2369 + AAUAGUGAGAAAGUGGCACU 20 2355
BCLllA-2370 + GUAGUCAUCCCCACAAUAGU 20 2356
BCLllA-2371 + AAGUAGUCAUCCCCACAAUA 20 2357
BCLllA-2372 + ACGGUCAAGUGUGCAGCGGG 20 2358
BCLllA-2373 + CACGGUCAAGUGUGCAGCGG 20 2359
BCLllA-2374 + CUCACGGUCAAGUGUGCAGC 20 2360
BCLllA-2375 + GCUCACGGUCAAGUGUGCAG 20 2361
BCLllA-2376 + CGCUCACGGUCAAGUGUGCA 20 2362
BCLllA-2377 + AAAAGAGGUGAGACUGGCUU 20 2363
BCLllA-2378 + GAUUCCCGGGGAGAAAAGAG 20 2364
BCLllA-2379 + AAAACGAUUCCCGGGGAGAA 20 2365
BCLllA-2380 + U CU AAAAAACG AU U CCCGGG 20 2366
BCLllA-2381 + AGUCUAAAAAACGAUUCCCG 20 2367
BCLllA-2382 + AAGUCU AAAAAACG AUUCCC 20 2368
BCLllA-2383 + CAAGUCUAAAAAACGAUUCC 20 2369
BCLllA-2384 + ACAAGUCU AAAAAACG AUUC 20 2370
BCLllA-2385 + AAUGGGGGGGUAGGGAGGGA 20 2371
BCLllA-2386 + AGAAAAUGGGGGGGUAGGGA 20 2372
BCLllA-2387 + AAGAAAAUGGGGGGGUAGGG 20 2373
BCLllA-2388 + UAAGAAAAUGGGGGGGUAGG 20 2374
BCLllA-2389 + CGUAAGAAAAUGGGGGGGUA 20 2375
BCLllA-2390 + CCGUAAGAAAAUGGGGGGGU 20 2376
BCLllA-2391 + ACCGUAAGAAAAUGGGGGGG 20 2377
BCLllA-2392 + CACUCACCGUAAGAAAAUGG 20 2378
BCLllA-2393 + CCACUCACCGUAAGAAAAUG 20 2379
BCLllA-2394 + CCCACU CACCG UAAGAAAAU 20 2380
BCLllA-2395 + U CCCACU CACCG UAAGAAAA 20 2381
BCLllA-2396 + U U CCCACU CACCG U AAG AAA 20 2382
BCLllA-2397 + GGU UGCUUCCCACUCACCGU 20 2383
BCLllA-2398 + GGUGGGAGCUGGUGGGGAAA 20 2384
BCLllA-2399 + GGGUGGGAGCUGGUGGGGAA 20 2385
BCLllA-2400 + GGGGUGGGAGCUGGUGGGGA 20 2386 BCLllA-2401 + CCUGGGGGUGGGAGCUGGUG 20 2387
BCLllA-2402 + ACCUGGGGGUGGGAGCUGGU 20 2388
BCLllA-2403 + AACCUGGGGGUGGGAGCUGG 20 2389
BCLllA-2404 + AAACCUGGGGGUGGGAGCUG 20 2390
BCLllA-2405 + UCACAUGCAAACCUGGGGGU 20 2391
BCLllA-2406 + CUCACAUGCAAACCUGGGGG 20 2392
BCLllA-2407 + ACUCACAUGCAAACCUGGGG 20 2393
BCLllA-2408 + AACAACUCACAUGCAAACCU 20 2394
BCLllA-2409 + GAACAACUCACAUGCAAACC 20 2395
BCLllA-2410 + CGAACAACUCACAUGCAAAC 20 2396
BCLllA-2411 + UAAUGAACAAUGCUAAGGUU 20 2397
BCLllA-2412 + CCCGCCAGUUUUGCAAAAUA 20 2398
BCLllA-2413 + CUU UAUUUCUCUUU UCGAAA 20 2399
BCLllA-2414 + GCU UUAUUUCUCUU UUCGAA 20 2400
BCLllA-2415 + CCGCCGCUUUAUU UCUCUUU 20 2401
BCLllA-2416 + CCAU UGCCGUGUAUGCACUU 20 2402
BCLllA-2417 + GAAAAAACCCUCAUCCCAUC 20 2403
BCLllA-2418 + GGAAAAAACCCUCAUCCCAU 20 2404
BCLllA-2419 + CG AG G U A A A AG AG A U A A AG G 20 2405
BCLllA-2420 + U CG AGG U AAAAG AG AU AAAG 20 2406
BCLllA-2421 + GUCGAGGUAAAAGAGAUAAA 20 2407
BCLllA-2422 + AGUCGAGGUAAAAGAGAUAA 20 2408
BCLllA-2423 + G AG U CG AGG U AAAAG AG AU A 20 2409
BCLllA-2424 + ACCUCCGAGAGUCGAGGUAA 20 2410
BCLllA-2425 + ACGAGAAAAACCUCCGAGAG 20 2411
BCLllA-2426 + U UUUCACGAGAAAAACCUCC 20 2412
BCLllA-2427 + AU U U U U CACG AG AAAAACCU 20 2413
BCLllA-2428 + UGCAUUUUUAAAUUUU UCAC 20 2414
BCLllA-2429 + CAUGCAUUUUUAAAUUUUUC 20 2415
BCLllA-2430 + AGCAAAAGCGAGGGGGAGAG 20 2416
BCLllA-2431 + AAGCAAAAGCGAGGGGGAGA 20 2417
BCLllA-2432 + AGAAGCAAAAGCGAGGGGGA 20 2418
BCLllA-2433 + CUAGAAGCAAAAGCGAGGGG 20 2419
BCLllA-2434 + GACUAGAAGCAAAAGCGAGG 20 2420
BCLllA-2435 + GGACUAGAAGCAAAAGCGAG 20 2421
BCLllA-2436 + AGGACUAGAAGCAAAAGCGA 20 2422
BCLllA-2437 + CAGGACUAGAAGCAAAAGCG 20 2423
BCLllA-2438 + G C AG G AC U AG AAG CAAA AG C 20 2424
BCLllA-2439 + GCGCAGGACUAGAAGCAAAA 20 2425
BCLllA-2440 + AU CACG AG AG CG CG CAGG AC 20 2426
BCLllA-2441 + U UAAUAAUCACGAGAGCGCG 20 2427
BCLllA-2442 + U AAU AAU U AU U AAU AAU CAC 20 2428 BCLllA-2443 + AAUAAUAAUUAUUAAUAAUC 20 2429
BCLllA-2444 + ACCUCAGAGGCAGCAAG 17 2430
BCLllA-2445 + G AACCU CAG AGG CAG CA 17 2431
BCLllA-2446 + CGAACCUCAGAGGCAGC 17 2432
BCLllA-2447 + CCCUCCCGACCGAACCU 17 2433
BCLllA-2448 + CUGCCCUCCCCUCCCGA 17 2434
BCLllA-2449 + GCCCGGACUGCUGCCUC 17 2435
BCLllA-2450 + AGAGGGAGGGAGGGAGC 17 2436
BCLllA-2451 + CGCGGGAGAGGGAGGGA 17 2437
BCLllA-2452 + ACGCGGGAGAGGGAGGG 17 2438
BCLllA-2453 + CACGCGGGAGAGGGAGG 17 2439
BCLllA-2454 + GGCACGCGGGAGAGGGA 17 2440
BCLllA-2455 + GGGCACGCGGGAGAGGG 17 2441
BCLllA-2456 + GGGGCACGCGGGAGAGG 17 2442
BCLllA-2457 + CGGGGGCACGCGGGAGA 17 2443
BCLllA-2458 + CCGGGGGCACGCGGGAG 17 2444
BCLllA-2459 + GCCGGGGGCACGCGGGA 17 2445
BCLllA-2460 + CGGCCGGGGGCACGCGG 17 2446
BCLllA-2461 + GGCGGCCGGGGGCACGC 17 2447
BCLllA-2462 + AGGCGGCCGGGGGCACG 17 2448
BCLllA-2463 + GAGGCGGCCGGGGGCAC 17 2449
BCLllA-2464 + CGGGGGAGGAGGCGGCC 17 2450
BCLllA-2465 + CCGGGGGAGGAGGCGGC 17 2451
BCLllA-2466 + GCCGGGGGAGGAGGCGG 17 2452
BCLllA-2467 + GGAGCUAGGGCCGGGGG 17 2453
BCLllA-2468 + AGGAGCUAGGGCCGGGG 17 2454
BCLllA-2469 + GCAGGAGCUAGGGCCGG 17 2455
BCLllA-2470 + GGCAGGAGCUAGGGCCG 17 2456
BCLllA-2471 + GGGCAGGAGCUAGGGCC 17 2457
BCLllA-2472 + AGGGCAGGAGCUAGGGC 17 2458
BCLllA-2473 + AAGGGCAGGAGCUAGGG 17 2459
BCLllA-2474 + CGCCGAAGGGCAGGAGC 17 2460
BCLllA-2475 + CGCCGCCGCCGAAGGGC 17 2461
BCLllA-2476 + CCGCCGCCGCCGAAGGG 17 2462
BCLllA-2477 + CGCCGCCGCCGCCGCCG 17 2463
BCLllA-2478 + CGCCGCCGCCGCCGCCG 17 2464
BCLllA-2479 + UUUUGUUCCGGCCAGAG 17 2465
BCLllA-2480 + CCGCCUUU UGUUCCGGC 17 2466
BCLllA-2481 + GUGGGACCGGGAAGGAC 17 2467
BCLllA-2482 + CGUGGGACCGGGAAGGA 17 2468
BCLllA-2483 + CCGUGGGACCGGGAAGG 17 2469
BCLllA-2484 + AGAGCCGUGGGACCGGG 17 2470 BCLllA-2485 + GGGAGAGCCGUGGGACC 17 2471
BCLllA-2486 + GGGGAGAGCCGUGGGAC 17 2472
BCLllA-2487 + CGGGGAGAGCCGUGGGA 17 2473
BCLllA-2488 + GGCGACGGGGAGAGCCG 17 2474
BCLllA-2489 + CGGCGACGGGGAGAGCC 17 2475
BCLllA-2490 + GGGGCCGCGGCGACGGG 17 2476
BCLllA-2491 + GAGGGGCCGCGGCGACG 17 2477
BCLllA-2492 + AGAGGGGCCGCGGCGAC 17 2478
BCLllA-2493 + GAGAGGGGCCGCGGCGA 17 2479
BCLllA-2494 + GGAGAGGGGCCGCGGCG 17 2480
BCLllA-2495 + GUCCGCGGAGUCGGGAG 17 2481
BCLllA-2496 + AGUCCGCGGAGUCGGGA 17 2482
BCLllA-2497 + UGAGUCCGCGGAGUCGG 17 2483
BCLllA-2498 + CCUGAGUCCGCGGAGUC 17 2484
BCLllA-2499 + UCCUGAGUCCGCGGAGU 17 2485
BCLllA-2500 + CUCCUGAGUCCGCGGAG 17 2486
BCLllA-2501 + CGGCGCUCCUGAGUCCG 17 2487
BCLllA-2502 + CCGGCGCUCCUGAGUCC 17 2488
BCLllA-2503 + AGGGGCCCCCGGCGCUC 17 2489
BCLllA-2504 + AAAGUGGCACUGUGGAA 17 2490
BCLllA-2505 + GAAAGUGGCACUGUGGA 17 2491
BCLllA-2506 + GUGAGAAAGUGGCACUG 17 2492
BCLllA-2507 + AG U G AG AAAG U G G C AC U 17 2493
BCLllA-2508 + GUCAUCCCCACAAUAGU 17 2494
BCLllA-2509 + UAGUCAUCCCCACAAUA 17 2495
BCLllA-2510 + GUCAAGUGUGCAGCGGG 17 2496
BCLllA-2511 + GGUCAAGUGUGCAGCGG 17 2497
BCLllA-2512 + ACGGUCAAGUGUGCAGC 17 2498
BCLllA-2513 + C ACG G U CAAG U G U G C AG 17 2499
BCLllA-2514 + UCACGGUCAAGUGUGCA 17 2500
BCLllA-2515 + AGAGGUGAGACUGGCU U 17 2501
BCLllA-2516 + UCCCGGGGAGAAAAGAG 17 2502
BCLllA-2517 + ACGAUUCCCGGGGAGAA 17 2503
BCLllA-2518 + AAAAAACGAUUCCCGGG 17 2504
BCLllA-2519 + CUAAAAAACGAUUCCCG 17 2505
BCLllA-2520 + U CU AAAAAACG AU U CCC 17 2506
BCLllA-2521 + GUCUAAAAAACGAUUCC 17 2507
BCLllA-2522 + AG UCU AAAAAACG AUUC 17 2508
BCLllA-2523 + GGGGGGGUAGGGAGGGA 17 2509
BCLllA-2524 + AAAUGGGGGGGUAGGGA 17 2510
BCLllA-2525 + AAAAUGGGGGGGUAGGG 17 2511
BCLllA-2526 + GAAAAUGGGGGGGUAGG 17 2512 BCLllA-2527 + AAGAAAAUGGGGGGGUA 17 2513
BCLllA-2528 + UAAGAAAAUGGGGGGGU 17 2514
BCLllA-2529 + GUAAGAAAAUGGGGGGG 17 2515
BCLllA-2530 + U C A CCG U A AG A A A A U G G 17 2516
BCLllA-2531 + CUCACCGUAAGAAAAUG 17 2517
BCLllA-2532 + ACUCACCGUAAGAAAAU 17 2518
BCLllA-2533 + CACU CACCG UAAGAAAA 17 2519
BCLllA-2534 + CCACUCACCGUAAGAAA 17 2520
BCLllA-2535 + UGCUUCCCACUCACCGU 17 2521
BCLllA-2536 + GGGAGCUGGUGGGGAAA 17 2522
BCLllA-2537 + UGGGAGCUGGUGGGGAA 17 2523
BCLllA-2538 + GUGGGAGCUGGUGGGGA 17 2524
BCLllA-2539 + GGGGGUGGGAGCUGGUG 17 2525
BCLllA-2540 + UGGGGGUGGGAGCUGGU 17 2526
BCLllA-2541 + CUGGGGGUGGGAGCUGG 17 2527
BCLllA-2542 + CCUGGGGGUGGGAGCUG 17 2528
BCLllA-2543 + CAUGCAAACCUGGGGGU 17 2529
BCLllA-2544 + ACAUGCAAACCUGGGGG 17 2530
BCLllA-2545 + CACAUGCAAACCUGGGG 17 2531
BCLllA-2546 + AAC U CAC AU G CAAACCU 17 2532
BCLllA-2547 + CAACUCACAUGCAAACC 17 2533
BCLllA-2548 + ACAACUCACAUGCAAAC 17 2534
BCLllA-2549 + UGAACAAUGCUAAGGUU 17 2535
BCLllA-2550 + GCCAGUUUUGCAAAAUA 17 2536
BCLllA-2551 + UAUUUCUCUUUUCGAAA 17 2537
BCLllA-2552 + UUAUUUCUCUUUUCGAA 17 2538
BCLllA-2553 + CCGCUUUAUUUCUCUU U 17 2539
BCLllA-2554 + UUGCCGUGUAUGCACUU 17 2540
BCLllA-2555 + AAAACCCUCAUCCCAUC 17 2541
BCLllA-2556 + AAAAACCCUCAUCCCAU 17 2542
BCLllA-2557 + G G U A A A AG AG A U A A AG G 17 2543
BCLllA-2558 + AG G U A A A AG AG A U A A AG 17 2544
BCLllA-2559 + G AGG U AAAAG AG AU AAA 17 2545
BCLllA-2560 + CG AG G U A A A AG AG A U A A 17 2546
BCLllA-2561 + U CG AGG U AAAAG AG AU A 17 2547
BCLllA-2562 + UCCGAGAGUCGAGGUAA 17 2548
BCLllA-2563 + AGAAAAACCUCCGAGAG 17 2549
BCLllA-2564 + UCACGAGAAAAACCUCC 17 2550
BCLllA-2565 + U U U CACG AG AAAAACCU 17 2551
BCLllA-2566 + AUUUUUAAAUUUUUCAC 17 2552
BCLllA-2567 + GCAUUUUUAAAUUUUUC 17 2553
BCLllA-2568 + AAAAGCGAGGGGGAGAG 17 2554 BCLllA-2569 + CAAAAGCGAGGGGGAGA 17 2555
BCLllA-2570 + AGCAAAAGCGAGGGGGA 17 2556
BCLllA-2571 + G A AG C A A A AG CG AG G G G 17 2557
BCLllA-2572 + U AG AAG CAAAAG CG AGG 17 2558
BCLllA-2573 + CUAGAAGCAAAAGCGAG 17 2559
BCLllA-2574 + ACU AG AAG CAAAAG CG A 17 2560
BCLllA-2575 + G ACU AG AAG CAAAAG CG 17 2561
BCLllA-2576 + GGACUAGAAG CAAAAG C 17 2562
BCLllA-2577 + CAGGACUAGAAG C A A A A 17 2563
BCLllA-2578 + ACGAGAGCGCGCAGGAC 17 2564
BCLllA-2579 + AUAAUCACGAGAGCGCG 17 2565
BCLllA-2580 + U AAU U AU U AAU AAU CAC 17 2566
BCLllA-2581 + AAUAAUUAUUAAUAAUC 17 2567
Table 2C provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the BCLllA gene by targeting within the lOOObp of sequence 3' of the start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule to cause a steric block at the target region, e.g., within lOOObp of sequence 3' of the start codon to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a N. meningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 2C
Figure imgf000174_0001
Table 3A provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to first tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: BCL11A- 2607 and BCL11A-2593, BCL11A-2607 and BCL11A-2598, BCL11A-264 and BCL11A-2593, BCL11A-2614 and BCL11A-2598, BCL11A-2589 and BCL11A-2664, BCL11A-2589 and BCLl lA-2666, BCLl lA-2596 and BCLl lA-2664, BCLl lA-2596 and BCLl lA-2666,
BCLl lA-2603 and BCLl lA-2664, of BCLl lA-2603 and BCLl lA-2666.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene. For example, gRNA pairs that target upstream (i.e., 5') of the enhancer region in the BCLllA gene (e.g., 2607 and BCLl lA-2593, BCLl lA-2607 and BCLl lA-2598, BCL11A- 264 and BCL11A-2593, or BCL11A-2614 and BCL11A-2598) can be paired with gRNA pairs that target downstream (i.e., 3') of the enhancer region in the BCLllA gene (e.g., BCL11A-2589 and BCL11A-2664, BCL11A-2589 and BCL11 A-2666, BCL11A-2596 and BCL11A-2664, BCL11 A-2596 and BCL11 A-2666, BCL11 A-2603 and BCL11 A-2664, or BCL11 A-2603 and BCLl lA-2666).
Table 3A 1st Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-2588 + GAGCTCCATGTGCAGAACGA 20 2574
BCLllA-2589 + GAGCTCCCAACGGGCCG 17 2575
BCLllA-2590 - GAGTGCAGAATATGCCCCGC 20 2576
BCLllA-2591 + GATAAACAATCGTCATCCTC 20 2577
BCLllA-2592 + GATGCCAACCTCCACGGGAT 20 2578
BCLllA-2593 - GCAGAATATGCCCCGCA 17 2579
BCLllA-2594 - GCATCCAATCCCGTGGAGGT 20 2580
BCLllA-2595 + GCCAACCTCCACGGGAT 17 2581
BCLllA-2596 + GCTCCCAACGGGCCGTGGTC 20 2582
BCLllA-2597 - GGAGCTCTAATCCCCACGCC 20 2583
Table 3B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 3B
Figure imgf000177_0001
Table 3C provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to third tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 3C
Figure imgf000178_0001
BCLllA-2639 + GTTC ATCTG G C ACTG CCC AC 20 2625
BCLllA-2640 - GTTGGGAGCTCCAGAAG 17 2626
Table 3D provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to forth tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 3D
Figure imgf000179_0001
BCLllA-2646 - AAACTTCTGCACTGGAG 17 2632
BCLllA-2647 + AAATAAGAATGTCCCCCAAT 20 2633
BCLllA-2648 - AACCCCAGCACTTAAGCAAA 20 2634
BCLllA-2649 + AAGAATGGCTTCAAGAGGCT 20 2635
BCLllA-2650 + A ATG G CTTC A AG AG G CT 17 2636
BCLllA-2651 - ACAGATGATGAACCAGACCA 20 2637
BCLllA-2652 - ACCAGACCACGGCCCGT 17 2638
BCLllA-2653 - ACCCC AG CACTTAAG CAAAC 20 2639
BCLllA-2654 + ACCTGGATGCCAACCTCCAC 20 2640
BCLllA-2655 + ACTGCCCACAGGTGAGG 17 2641
BCLllA-2656 + AGAGCTCCATGTGCAGAACG 20 2642
BCLllA-2657 - AGATGAACTTCCCATTG 17 2643
BCLllA-2658 + AGCTCCATGTGCAGAACGAG 20 2644
BCLllA-2659 - AGGAATTTGCCCCAAAC 17 2645
BCLllA-2660 + AGGAGGTCATGATCCCCTTC 20 2646
BCLllA-2661 + AGGTCATGATCCCCTTC 17 2647
BCLllA-2662 - ATAAACTTCTGCACTGG 17 2648
BCLllA-2663 + ATAAGAATGTCCCCCAA 17 2649
BCLllA-2664 - ATCATGACCTCCTCACCTGT 20 2650
BCLllA-2665 + ATCTCGATTGGTGAAGGGGA 20 2651
BCLllA-2666 - ATGACCTCCTCACCTGT 17 2652
BCLllA-2667 + ATGTGCAGAACGAGGGG 17 2653
BCLllA-2668 + ATTGGTGAAGGGGAAGG 17 2654
BCLllA-2669 - CACAAACGGAAACAATGCAA 20 2655
BCLllA-2670 + CACTCATCCCAGGCGTG 17 2656
BCLllA-2671 + CAGAACGAGGGGAGGAG 17 2657
BCLllA-2672 - CAGATGAACTTCCCATT 17 2658
BCLllA-2673 + C AG CTTTTTCTAAG CAG 17 2659
BCLllA-2674 - CATCCAGGTCACGCCAG 17 2660
BCLllA-2675 + CATCTCGATTGGTGAAG 17 2661
BCLllA-2676 + CATCTGGCACTGCCCAC 17 2662
BCLllA-2677 - CATGACCTCCTCACCTG 17 2663
BCLllA-2678 + C C A ATG G G A AGTTC ATC 17 2664
BCLllA-2679 + CCACAGCTTTTTCTAAGCAG 20 2665
BCLllA-2680 - CCAGACCACGGCCCGTT 17 2666
BCLllA-2681 - CCAGATGAACTTCCCAT 17 2667
BCLllA-2682 - CCAGATGAACTTCCCATTGG 20 2668
BCLllA-2683 - CCAG CACTTAAG CAAAC 17 2669
BCLllA-2684 - CCCAGCACTTAAGCAAA 17 2670
BCLllA-2685 + CCCCTTCTGGAGCTCCCAAC 20 2671
BCLllA-2686 - CCCGTTGGGAGCTCCAGAAG 20 2672
BCLllA-2687 - CCGTTGGGAGCTCCAGA 17 2673 BCLllA-2688 + CCGTTTG CTTAAGTG CT 17 2674
BCLllA-2689 - CCTCTGCTTAGAAAAAGCTG 20 2675
BCLllA-2690 + CCTTCTGGAGCTCCCAA 17 2676
BCLllA-2691 - CGTGGAGGTTGGCATCC 17 2677
BCLllA-2692 - CGTTG G G AG CTC C AG A A 17 2678
BCLllA-2693 + CGTTTG CTTAAGTG CTG 17 2679
BCLllA-2694 + CTATGTGTTCCTGTTTG 17 2680
BCLllA-2695 + CTCCATGTGCAGAACGA 17 2681
BCLllA-2696 - CTCTAATCCCCACGCCT 17 2682
BCLllA-2697 + CTG CACTCATCCCAGG CGTG 20 2683
BCLllA-2698 + CTG CTATGTGTTCCTGTTTG 20 2684
BCLllA-2699 - CTG CTTAG AAAAAG CTG 17 2685
BCLllA-2700 + CTGGAGCTCCCAACGGGCCG 20 2686
BCLllA-2701 + CTGGATGCCAACCTCCA 17 2687
BCLllA-2702 + CTTCTGGAGCTCCCAAC 17 2688
BCLllA-2703 - TAAACTTCTGCACTGGA 17 2689
BCLllA-2704 + TAAGAATGTCCCCCAAT 17 2690
BCLllA-2705 - TAGAGGAATTTGCCCCAAAC 20 2691
BCLllA-2706 + TATTCTGCACTCATCCC 17 2692
BCLllA-2707 + TCCATGTGCAGAACGAG 17 2693
BCLllA-2708 + TCCATGTGCAGAACGAGGGG 20 2694
BCLllA-2709 - TCCCCTCGTTCTGCACA 17 2695
BCLllA-2710 + TCCCCTTCTGGAGCTCCCAA 20 2696
BCLllA-2711 - TCCCGTGGAGGTTGGCATCC 20 2697
BCLllA-2712 - TCCTCCCCTCGTTCTGCACA 20 2698
BCLllA-2713 + TCGATTGGTGAAGGGGA 17 2699
BCLllA-2714 + TCG ATTG GTG AAG GG G AAG G 20 2700
BCLllA-2715 + TCTG CACTCATCCCAGG CGT 20 2701
BCLllA-2716 + TCTGGCACTGCCCACAGGTG 20 2702
BCLllA-2717 + TCTGTAAGAATGGCTTCAAG 20 2703
BCLllA-2718 + TG CACTCATCCCAGG CG 17 2704
BCLllA-2719 - TGCCAGATGAACTTCCCATT 20 2705
BCLllA-2720 + TG CTATGTGTTCCTGTT 17 2706
BCLllA-2721 + TGGATGCCAACCTCCAC 17 2707
BCLllA-2722 + TG GTTC ATC ATCTGTAAG AA 20 2708
BCLllA-2723 - TGTTTATCAACGTCATCTAG 20 2709
BCLllA-2724 - 1 I A I 1 1 1 1 A I A A AAA 20 2710
BCLllA-2725 + TTCATCATCTGTAAGAA 17 2711
BCLllA-2726 + TTCCCGTTTGCTTAAGTGCT 20 2712
BCLllA-2727 + TTCTGCACTCATCCCAGGCG 20 2713
BCLllA-2728 + TTTCATCTCG ATTG GTG AAG 20 2714
BCLllA-2729 + TTTTC ATCTCG ATTG GTG AA 20 2715 BCLllA-2730 - 1 1 1 1 1 ATCGAGCACAAA 17 2716
BCLllA-2731 + TTTTTCATCTCGATTGGTGA 20 2717
Table 3E provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to fifth tier parameters. The targeting domains outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 3E
Figure imgf000182_0001
BCLllA-2737 + CTGGGTACTACGCCGAA 17 2723
BCLllA-2738 + GGGTACTACGCCGAATG 17 2724
BCLllA-2739 + TCGGACTTGACCGTCAT 17 2725
BCLllA-2740 + AGGGATACCAACCCGCG 17 2726
BCLllA-2741 - CGCGCTCAAGTCCGTGG 17 2727
BCLllA-2742 + CGAGGAGTGCTCCGACG 17 2728
BCLllA-2743 + GTCGGACTTGACCGTCA 17 2729
BCLllA-2744 + TGCACGCGTGGTCGCAC 17 2730
BCLllA-2745 - CAG CG CG CTCAAGTCCG 17 2731
BCLllA-2746 + TACCAACCCGCGGGGTC 17 2732
BCLllA-2747 - GTG G CTCG CCG G CTACG 17 2733
BCLllA-2748 + CGGACTTGACCGTCATG 17 2734
BCLllA-2749 - C ACCG C ATAG AG CG CCT 17 2735
BCLllA-2750 - GCGCATCAAGCTCGAGA 17 2736
BCLllA-2751 + GGCCCGGACCACTAATA 17 2737
BCLllA-2752 + GCCCGGACCACTAATAT 17 2738
BCLllA-2753 - GCATAAGCGCGGCCACC 17 2739
BCLllA-2754 + AGGCGCTCTATGCGGTG 17 2740
BCLllA-2755 - ACGGTCAAGTCCGACGA 17 2741
BCLllA-2756 + CGAGGCCGACTCGCCCG 17 2742
BCLllA-2757 - ACCG C ATAG AG CG CCTG 17 2743
BCLllA-2758 - CGACCACGCGTGCACCC 17 2744
BCLllA-2759 + GTACACGTTCTCCGTGT 17 2745
BCLllA-2760 - CACTTGCGACGAAGACT 17 2746
BCLllA-2761 - CGGGTTGGTATCCCTTC 17 2747
BCLllA-2762 - CTCGTCGGAGCACTCCT 17 2748
BCLllA-2763 + CCCGGACCACTAATATG 17 2749
BCLllA-2764 + TCGGTGGTGGACTAAAC 17 2750
BCLllA-2765 + CAG G CG CTCTATG CGGT 17 2751
BCLllA-2766 + AAGGGATACCAACCCGC 17 2752
BCLllA-2767 + GGCGCTCTATGCGGTGG 17 2753
BCLllA-2768 - CCACCGCATAGAGCGCC 17 2754
BCLllA-2769 - TACTCG CAGTG G CTCG C 17 2755
BCLllA-2770 - CGGGCGAGTCGGCCTCG 17 2756
BCLllA-2771 + TACACGTTCTCCGTGTT 17 2757
BCLllA-2772 - AGCACGCCCCATATTAG 17 2758
BCLllA-2773 + GAAGGGATACCAACCCG 17 2759
BCLllA-2774 + TTGGGCATCGCGGCCGG 17 2760
BCLllA-2775 - CCGGGCGAGTCGGCCTC 17 2761
BCLllA-2776 + GGTGGAGAGACCGTCGT 17 2762
BCLllA-2777 + GTTGGGCATCGCGGCCG 17 2763
BCLllA-2778 - AGAACGTGTACTCGCAG 17 2764 BCLllA-2779 + ACCAACCCGCGGGGTCA 17 2765
BCLllA-2780 - CACGAGAACAGCTCGCG 17 2766
BCLllA-2781 - TATTAGTGGTCCGGGCC 17 2767
BCLllA-2782 + CGTCG CAAGTGTCCCTG 17 2768
BCLllA-2783 + CCCGCGAGCTGTTCTCG 17 2769
BCLllA-2784 + TGCGCCGGTGCACCACC 17 2770
BCLllA-2785 - CTGCCCGACGTCATGCA 17 2771
BCLllA-2786 - GACGAAGACTCGGTGGC 17 2772
BCLllA-2787 - CCTGCCCGACGTCATGC 17 2773
BCLllA-2788 + AAG GG CG G CTTG CTACC 17 2774
BCLllA-2789 - GGGTGGACTACGGCTTC 17 2775
BCLllA-2790 + TCGCTGGTGCCGGGTTC 17 2776
BCLllA-2791 - GGCGAGAAGCATAAGCG 17 2777
BCLllA-2792 + G G ACTTG AG CG CG CTG C 17 2778
BCLllA-2793 - CTCGGTGGCCGGCGAGT 17 2779
BCLllA-2794 + CCCGAGGCCGACTCGCC 17 2780
BCLllA-2795 - CCCGGGCGAGTCGGCCT 17 2781
BCLllA-2796 - C CG CAT AG AG CG C CTG G 17 2782
BCLllA-2797 + TGTTGGGCATCGCGGCC 17 2783
BCLllA-2798 + GTGTTGGGCATCGCGGC 17 2784
BCLllA-2799 + TCTCTCGATACTGATCC 17 2785
BCLllA-2800 - ACCCGAGTGCCTTTGAC 17 2786
BCLllA-2801 + TCCGACGAGGAGGCAAA 17 2787
BCLllA-2802 - ACCCGGCACCAGCGACT 17 2788
BCLllA-2803 + CCCCGTTCTCCGGGATC 17 2789
BCLllA-2804 + CCGAGGCCGACTCGCCC 17 2790
BCLllA-2805 - CCCCATATTAGTGGTCC 17 2791
BCLllA-2806 + GACTTGGACTTGACCGG 17 2792
BCLllA-2807 - GCCCCATATTAGTGGTC 17 2793
BCLllA-2808 - AGGGTGGACTACGGCTT 17 2794
BCLllA-2809 - CAAATCGTCCCCCATGA 17 2795
BCLllA-2810 - CGACGTCATGCAGGGCA 17 2796
BCLllA-2811 - GGCCGCGATGCCCAACA 17 2797
BCLllA-2812 + CC AGG CG CTCTATG CG G 17 2798
BCLllA-2813 - CCTGATCCCGGAGAACG 17 2799
BCLllA-2814 + CCAACCCGCGGGGTCAG 17 2800
BCLllA-2815 - GGCGAGTCGGCCTCGGG 17 2801
BCLllA-2816 + G G CAAAAG G CG ATTGTC 17 2802
BCLllA-2817 + TTTGGACAGGCCCCCCG 17 2803
BCLllA-2818 + G CG G CTTG CTAC CTG G C 17 2804
BCLllA-2819 + GGACTTGACCGTCATGG 17 2805
BCLllA-2820 + GGAGTGCTCCGACGAGG 17 2806 BCLllA-2821 - ATTAGTGGTCCGGGCCC 17 2807
BCLllA-2822 - CCACG AG AACAG CTCG C 17 2808
BCLllA-2823 - GTATCGAGAGAGGCTTC 17 2809
BCLllA-2824 + CTCCGTGTTGGGCATCG 17 2810
BCLllA-2825 + CAAACTCCCGTTCTCCG 17 2811
BCLllA-2826 - ACCTGATCCCGGAGAAC 17 2812
BCLllA-2827 - GGCACTGTTAATGGCCG 17 2813
BCLllA-2828 + TTCTCCGGGATCAGGTT 17 2814
BCLllA-2829 - TATGGAGCCTCCCGCCA 17 2815
BCLllA-2830 + CTTGATGCGCTTAGAGA 17 2816
BCLllA-2831 - TAG C A AG C CG C C CTTC C 17 2817
BCLllA-2832 - CCGGCTACGCGGCCTCC 17 2818
BCLllA-2833 + TCC AAGTG ATGTCTCG G 17 2819
BCLllA-2834 - GAACAGCTCGCGGGGCG 17 2820
BCLllA-2835 - GCTGCGGTTGAATCCAA 17 2821
BCLllA-2836 + TGACTTGGACTTGACCG 17 2822
BCLllA-2837 - CCCGGAGAACGGGGACG 17 2823
BCLllA-2838 + GTGGCGCTTCAGCTTGC 17 2824
BCLllA-2839 + GTTCTCCGGGATCAGGT 17 2825
BCLllA-2840 + CAGTG CC ATCGTCTATG 17 2826
BCLllA-2841 + TCTCCGGGATCAGGTTG 17 2827
BCLllA-2842 - GACGATGGCACTGTTAA 17 2828
BCLllA-2843 - CTGCTCCCCGGGCGAGT 17 2829
BCLllA-2844 + CGGTGGTGGACTAAACA 17 2830
BCLllA-2845 - CTCGCGGGGCGCGGTCG 17 2831
BCLllA-2846 + ATGCCCTGCATGACGTC 17 2832
BCLllA-2847 + TGGACTTGACCGGGGGC 17 2833
BCLllA-2848 - ACCACCGAGACATCACT 17 2834
BCLllA-2849 - GGAGTTCGACCTGCCCC 17 2835
BCLllA-2850 + CCTG CATG ACGTCG GG C 17 2836
BCLllA-2851 + CTGCATGACGTCGGGCA 17 2837
BCLllA-2852 - AGGATCAGTATCGAGAG 17 2838
BCLllA-2853 + GGACTTGACCGGGGGCT 17 2839
BCLllA-2854 + AAAGGCACTCGGGTGAT 17 2840
BCLllA-2855 - TGGACGGAGGGATCTCG 17 2841
BCLllA-2856 + CCCCCAGGCGCTCTATG 17 2842
BCLllA-2857 - CCGCCATGGATTTCTCT 17 2843
BCLllA-2858 - GGCGCGGTCGTGGGCGT 17 2844
BCLllA-2859 - AACCTGATCCCGGAGAA 17 2845
BCLllA-2860 + CATGCCCTGCATGACGT 17 2846
BCLllA-2861 + CGCTGGTGCCGGGTTCC 17 2847
BCLllA-2862 + CCTGGAGGCCGCGTAGC 17 2848 BCLllA-2863 - CCCCTGACCCCGCGGGT 17 2849
BCLllA-2864 + G CTTATG CTTCTCG CCC 17 2850
BCLllA-2865 - AAGTCATG CG AGTTCTG 17 2851
BCLllA-2866 + CACCAAGTCG CTGGTG C 17 2852
BCLllA-2867 - CCCGAGTGCCTTTGACA 17 2853
BCLllA-2868 + CATGACTTGGACTTGAC 17 2854
BCLllA-2869 - CGACCCCAACCTGATCC 17 2855
BCLllA-2870 + ACCAAGTCGCTGGTGCC 17 2856
BCLllA-2871 + AAGTGATGTCTCGGTGG 17 2857
BCLllA-2872 - CTTCTCCACACCGCCCG 17 2858
BCLllA-2873 + TGGAGTCTCCGAAGCTA 17 2859
BCLllA-2874 - CGCTTCTCCACACCGCC 17 2860
BCLllA-2875 + GCTGGTGCCGGGTTCCG 17 2861
BCLllA-2876 - CGCAGCGGCACGGGAAG 17 2862
BCLllA-2877 + GCATCGCGGCCGGGGGC 17 2863
BCLllA-2878 - GAGCACTCCTCGGAGAA 17 2864
BCLllA-2879 + GGGGGGCGTCGCCAGGA 17 2865
BCLllA-2880 + G A AAG CG CCCTTCTG CC 17 2866
BCLllA-2881 - CTGGACGGAGGGATCTC 17 2867
BCLllA-2882 - CGGCTTCGGGCTGAGCC 17 2868
BCLllA-2883 + GGGGGCGTCGCCAGGAA 17 2869
BCLllA-2884 + TA A CCTTTG C ATAG G G C 17 2870
BCLllA-2885 - GGGCGAGTCGGCCTCGG 17 2871
BCLllA-2886 - CACACCGCCCGGGGAGC 17 2872
BCLllA-2887 - GGGATCTCGGGGCGCAG 17 2873
BCLllA-2888 + CTCG CTG A AGTG CTG C A 17 2874
BCLllA-2889 - TCGGGGCGCAGCGGCAC 17 2875
BCLllA-2890 - AAGTCCCCTGACCCCGC 17 2876
BCLllA-2891 - GCCTTTTGCCTCCTCGT 17 2877
BCLllA-2892 - CACCTGGCCGAGGCCGA 17 2878
BCLllA-2893 - GGTATCCCTTCAGGACT 17 2879
BCLllA-2894 + GTGGTG G ACTAA ACAG G 17 2880
BCLllA-2895 + GCGAGCTGTTCTCGTGG 17 2881
BCLllA-2896 - AGCACTCCTCGGAGAAC 17 2882
BCLllA-2897 - CATG CAG CACTTCAG CG 17 2883
BCLllA-2898 + TGGCCTGGGTGCACGCG 17 2884
BCLllA-2899 - AGCGAGAGGGTGGACTA 17 2885
BCLllA-2900 + G CACAG GTTG CACTTGT 17 2886
BCLllA-2901 + GAGAAATCCATGGCGGG 17 2887
BCLllA-2902 + GCAGAACTCGCATGACT 17 2888
BCLllA-2903 + TCTCCGAAGCTAAGGAA 17 2889
BCLllA-2904 + TGACGTCGGGCAGGGCG 17 2890 BCLllA-2905 + GGGTCCAAGTGATGTCT 17 2891
BCLllA-2906 - GCAACCTGGTGGTGCAC 17 2892
BCLllA-2907 + GGTGGCGCGCCGCCTCC 17 2893
BCLllA-2908 + GCTGCCCACCAAGTCGC 17 2894
BCLllA-2909 + GTTCTCG CTCTTG AACT 17 2895
BCLllA-2910 + CCGCAGCACCCTGTCAA 17 2896
BCLllA-2911 - GAAGTCCCCTGACCCCG 17 2897
BCLllA-2912 - GCGCGGCCACCTGGCCG 17 2898
BCLllA-2913 + GGCGTCGCCAGGAAGGG 17 2899
BCLllA-2914 - GTTG A ATC C A ATG G CT A 17 2900
BCLllA-2915 - CTCGGGGCGCAGCGGCA 17 2901
BCLllA-2916 - CCGAGGCCGAGGGCCAC 17 2902
BCLllA-2917 + CTAAACAGGGGGGGAGT 17 2903
BCLllA-2918 - GCGGCACGGGAAGTGGA 17 2904
BCLllA-2919 + CACAGGTTGCACTTGTA 17 2905
BCLllA-2920 - CAGCGAGGCCTTCCACC 17 2906
BCLllA-2921 - AACCTGCTAAGAATACC 17 2907
BCLllA-2922 + ATC CTG GTATTCTT AG C 17 2908
BCLllA-2923 + GGTGGTGGACTAAACAG 17 2909
BCLllA-2924 - CGAGGCCGAGGGCCACA 17 2910
BCLllA-2925 + GTACATGTGTAG CTG CT 17 2911
BCLllA-2926 + TTG ATG CG CTTAG AG AA 17 2912
BCLllA-2927 + TCCTCGTCCCCGTTCTC 17 2913
BCLllA-2928 + ATGACTTGGACTTGACC 17 2914
BCLllA-2929 + GTCTCCGAAGCTAAGGA 17 2915
BCLllA-2930 + GGTGGACTAAACAGGGG 17 2916
BCLllA-2931 + GCATGTGCGTCTTCATG 17 2917
BCLllA-2932 + GGCACTCGGGTGATGGG 17 2918
BCLllA-2933 + ATAGGGCTGGGCCGGCC 17 2919
BCLllA-2934 + CCGTCCAGCTCCCCGGG 17 2920
BCLllA-2935 + GCAGTAACCTTTGCATA 17 2921
BCLllA-2936 - GATCCCTTCCTTAGCTT 17 2922
BCLllA-2937 + AAG GG G CTC AG CG AG CT 17 2923
BCLllA-2938 - AGCTGACGGAGAGCGAG 17 2924
BCLllA-2939 - TCGCGGGGCGCGGTCGT 17 2925
BCLllA-2940 - AGCGGCACGGGAAGTGG 17 2926
BCLllA-2941 + CAAAGGCACTCGGGTGA 17 2927
BCLllA-2942 + CTGCACCTAGTCCTGAA 17 2928
BCLllA-2943 - GCTGGACGGAGGGATCT 17 2929
BCLllA-2944 + CCCTGTCAAAG G C ACTC 17 2930
BCLllA-2945 + A A C CTTTG CATAGGGCT 17 2931
BCLllA-2946 + CGCCCGGGGAGCAGCCG 17 2932 BCLllA-2947 + TGGTGGACTAAACAGGG 17 2933
BCLllA-2948 - GGCCCAGCC CT ATG C A A 17 2934
BCLllA-2949 + CCTCGTCCCCGTTCTCC 17 2935
BCLllA-2950 - GCCAGCTCCCCGGAACC 17 2936
BCLllA-2951 + GCCGGGTTCCGGGGAGC 17 2937
BCLllA-2952 + TG C AGTAACCTTTG CAT 17 2938
BCLllA-2953 + GCTTCTCGCCCAGGACC 17 2939
BCLllA-2954 - CCGCCCGGGGAGCTGGA 17 2940
BCLllA-2955 - CCGGGGAGCTGGACGGA 17 2941
BCLllA-2956 - CTTCCGGCCTGGCAGAA 17 2942
BCLllA-2957 + CCTAGAGAAATCCATGG 17 2943
BCLllA-2958 + GGAGGGGGGGCGTCGCC 17 2944
BCLllA-2959 - TACTTAGAAAGCGAACA 17 2945
BCLllA-2960 + GGAGGCTCCATAGCCAT 17 2946
BCLllA-2961 + ACACATCTTGAGCTCTC 17 2947
BCLllA-2962 - GGCACCAGCGACTTGGT 17 2948
BCLllA-2963 + GGGATCTTTGAGCTGCC 17 2949
BCLllA-2964 + GCAGCAG I 1 1 1 1 GAC 17 2950
BCLllA-2965 + CTG C A AT ATG A ATC CC A 17 2951
BCLllA-2966 + TCTGCACCTAGTCCTGA 17 2952
BCLllA-2967 + GAAGGGGCTCAGCGAGC 17 2953
BCLllA-2968 + TTCCGGGGAGCTGGCGG 17 2954
BCLllA-2969 - GCACCGGCGCAGCCACA 17 2955
BCLllA-2970 + ATATGAATCCCATGGAG 17 2956
BCLllA-2971 - GTGGTCCGGGCCCGGGC 17 2957
BCLllA-2972 - CTTCACACACCCCCATT 17 2958
BCLllA-2973 - GTCCAAA AAG CTG CTG C 17 2959
BCLllA-2974 - CGGCACCAGCGACTTGG 17 2960
BCLllA-2975 - GCTTCTCCACACCGCCC 17 2961
BCLllA-2976 + CGCCCGTGTGGCTGCGC 17 2962
BCLllA-2977 - CACGCACAGAACACTCA 17 2963
BCLllA-2978 + TGTACATGTGTAGCTGC 17 2964
BCLllA-2979 - CACCGGCGCAGCCACAC 17 2965
BCLllA-2980 + TTG CTACCTG G CTG G AA 17 2966
BCLllA-2981 + ACCCTGTCAAAG G C ACT 17 2967
BCLllA-2982 - CCACCTGGCCGAGGCCG 17 2968
BCLllA-2983 + GGGCGGATTGCAGAGGA 17 2969
BCLllA-2984 + CTAG AG A A ATC C ATG G C 17 2970
BCLllA-2985 - GGCGGAAGAGATGGCCC 17 2971
BCLllA-2986 + GGGGCGGATTGCAGAGG 17 2972
BCLllA-2987 - GTGTGGCAGTTTTCGGA 17 2973
BCLllA-2988 - GAGAGAGGCTTCCGGCC 17 2974 BCLllA-2989 + CGGGTGATGGGTGGCCA 17 2975
BCLllA-2990 - CCCGGGGAGCTGGACGG 17 2976
BCLllA-2991 - TAGGAGACTTAGAGAGC 17 2977
BCLllA-2992 + CAC ATCTTG AG CTCTCT 17 2978
BCLllA-2993 + CCTCGGCCTCGGCCAGG 17 2979
BCLllA-2994 - GGCCTTCCACCAGGTCC 17 2980
BCLllA-2995 + TCTCGCCCAGGACCTGG 17 2981
BCLllA-2996 + TCTGCCCTCTTTTGAGC 17 2982
BCLllA-2997 + ACTAAACAGGGGGGGAG 17 2983
BCLllA-2998 + CTTGACCGGGGGCTGGG 17 2984
BCLllA-2999 + TTGACCGGGGGCTGGGA 17 2985
BCLllA-3000 - AGACTTAGAGAGCTGGC 17 2986
BCLllA-3001 - AGCCCACCGCTGTCCCC 17 2987
BCLllA-3002 - AG CCATTC ACC AGTG C A 17 2988
BCLllA-3003 - GCTTCCGGCCTGGCAGA 17 2989
BCLllA-3004 - G ACTTAG AG AG CTG G C A 17 2990
BCLllA-3005 - AG GCCCAG CTCAAA AG A 17 2991
BCLllA-3006 + TCGGGTGATGGGTGGCC 17 2992
BCLllA-3007 + CAAGAGAAACCATGCAC 17 2993
BCLllA-3008 + ATCTTTG AG CTG CCTG G 17 2994
BCLllA-3009 + TATTCTTAG CAG GTTAA 17 2995
BCLllA-3010 + CTGCCCTCTTTTGAGCT 17 2996
BCLllA-3011 + CCATCTCTTCCGCCCCC 17 2997
BCLllA-3012 - TGGCCGCGGCTGCTCCC 17 2998
BCLllA-3013 + CCTGTGGCCCTCGGCCT 17 2999
BCLllA-3014 + CAGCTCCCCGGGCGGTG 17 3000
BCLllA-3015 + TTTG CAT AG G G CTG G G C 17 3001
BCLllA-3016 + GGCCCTCGGCCTCGGCC 17 3002
BCLllA-3017 - GCTGACGGAGAGCGAGA 17 3003
BCLllA-3018 - AGATGTGTGGCAGTTTT 17 3004
BCLllA-3019 + ATTCTTAG CAG GTTAAA 17 3005
BCLllA-3020 + TCTCCTAGAGAAATCCA 17 3006
BCLllA-3021 - CCTTTGACAGGGTGCTG 17 3007
BCLllA-3022 + GGAGGGGCGGATTGCAG 17 3008
BCLllA-3023 + TTCTTAG CAG GTTAAAG 17 3009
BCLllA-3024 + CGGATTGCAGAGGAGGG 17 3010
BCLllA-3025 + TTTG AG CTGGGCCTGCC 17 3011
BCLllA-3026 + CTTCAG CTTG CTGG CCT 17 3012
BCLllA-3027 + CTTGAACTTGGCCACCA 17 3013
BCLllA-3028 - CTGCAACCATTCCAGCC 17 3014
BCLllA-3029 - CATAGAGCGCCTGGGGG 17 3015
BCLllA-3030 - GGGCGCGGTCGTGGGCG 17 3016 BCLllA-3031 + TCCCATGGAGAGGTGGC 17 3017
BCLllA-3032 - GGCCGCGGCTGCTCCCC 17 3018
BCLllA-3033 - ATTTCAGAGCAACCTGG 17 3019
BCLllA-3034 - GCCTTCCACCAGGTCCT 17 3020
BCLllA-3035 + TGAATCCCATGGAGAGG 17 3021
BCLllA-3036 + TTGAGCTGGGCCTGCCC 17 3022
BCLllA-3037 + AGGGGCTCAGCGAGCTG 17 3023
BCLllA-3038 + AGGGCTTCTCGCCCGTG 17 3024
BCLllA-3039 - CACCGCTGTCCCCAGGC 17 3025
BCLllA-3040 - CAAATTTCAGAGCAACC 17 3026
BCLllA-3041 - AGAGAGCTCAAGATGTG 17 3027
BCLllA-3042 + AACCATGCACTGGTGAA 17 3028
BCLllA-3043 + CCTCCGTCCAGCTCCCC 17 3029
BCLllA-3044 + AGTGTCCCTGTGGCCCT 17 3030
BCLllA-3045 + CCCTCCGTCCAGCTCCC 17 3031
BCLllA-3046 + GGCCTGGGGACAGCGGT 17 3032
BCLllA-3047 + GCCCAGCAGCAG CTTTT 17 3033
BCLllA-3048 - CAG G CCC AG CTCAAA AG 17 3034
BCLllA-3049 - CTTCG G G CTG AG C CTG G 17 3035
BCLllA-3050 + CCCATGGAGAGGTGGCT 17 3036
BCLllA-3051 - CCCAGCCACCTCTCCAT 17 3037
BCLllA-3052 + GGGTTCCGGGGAGCTGG 17 3038
BCLllA-3053 + TAGGGCTGGGCCGGCCT 17 3039
BCLllA-3054 - CCTGGGGGCGGAAGAGA 17 3040
BCLllA-3055 + GCCCAGGACCTGGTGGA 17 3041
BCLllA-3056 - CGGGCTGAGCCTGGAGG 17 3042
BCLllA-3057 - ACCACGAGAACAGCTCG 17 3043
BCLllA-3058 + CGGCCTGGGGACAGCGG 17 3044
BCLllA-3059 - TCCAAAA AG CTG CTG CT 17 3045
BCLllA-3060 + G CG CC CTTCTG C C AG G C 17 3046
BCLllA-3061 - TCCCAGCCACCTCTCCA 17 3047
BCLllA-3062 - CTCCACCGCCAGCTCCC 17 3048
BCLllA-3063 + CTGGGCCTGCCCGGGCC 17 3049
BCLllA-3064 + AGGGCTGGGCCGGCCTG 17 3050
BCLllA-3065 + AACAGGGGGGGAGTGGG 17 3051
BCLllA-3066 - GGAGAACGGGGACGAGG 17 3052
BCLllA-3067 + TGATGCGCTTAGAGAAG 17 3053
BCLllA-3068 + GGATTGCAGAGGAGGGA 17 3054
BCLllA-3069 + GGCCGGCCTGGGGACAG 17 3055
BCLllA-3070 + GATTGCAGAGGAGGGAG 17 3056
BCLllA-3071 + ATTGCAGAGGAGGGAGG 17 3057
BCLllA-3072 + ACCGGGGGCTGGGAGGG 17 3058 BCLllA-3073 + TGGAGAGGTGGCTGGGA 17 3059
BCLllA-3074 + TTGCAGAGGAGGGAGGG 17 3060
BCLllA-3075 - CGGGGACGAGGAGGAAG 17 3061
BCLllA-3076 - GACGGAGAGCGAGAGGG 17 3062
BCLllA-3077 - TCCTCCCTCCCAGCCCC 17 3063
BCLllA-3078 + G CTTCAG CTTG CTGG CC 17 3064
BCLllA-3079 + TGCAGAGGAGGGAGGGG 17 3065
BCLllA-3080 + GGGCTGGGAGGGAGGAG 17 3066
BCLllA-3081 - GGAAGAGGAGGACGACG 17 3067
BCLllA-3082 + GGGGCTGGGAGGGAGGA 17 3068
BCLllA-3083 - GGAGGACGACGAGGAAG 17 3069
BCLllA-3084 - GGAGGAGGAGGAGCTGA 17 3070
BCLllA-3085 + GGGGGCTGGGAGGGAGG 17 3071
BCLllA-3086 + CTGGGAGGGAGGAGGGG 17 3072
BCLllA-3087 - CGAGGAAGAGGAAGAAG 17 3073
BCLllA-3088 - GGACGAGGAGGAAGAGG 17 3074
BCLllA-3089 - GGAAGAAGAGGAGGAAG 17 3075
BCLllA-3090 - GGAAGAGGAAGAAGAGG 17 3076
BCLllA-3091 - AGAAGAGGAGGAAGAGG 17 3077
BCLllA-3092 - AGAGGAGGAAGAGGAGG 17 3078
BCLllA-3093 - GGAGGAAGAGGAGGAGG 17 3079
BCLllA-3094 + GTCTATGCGGTCCGACTCGC 20 3080
BCLllA-3095 + TCGTCGGACTTGACCGTCAT 20 3081
BCLllA-3096 + CGTCGGACTTGACCGTCATG 20 3082
BCLllA-3097 - ATGACGGTCAAGTCCGACGA 20 3083
BCLllA-3098 - GAGTCGGACCGCATAGACGA 20 3084
BCLllA-3099 + CGGGCCCGGACCACTAATAT 20 3085
BCLllA-3100 + GTCGTCGGACTTGACCGTCA 20 3086
BCLllA-3101 + CTCTGGGTACTACGCCGAAT 20 3087
BCLllA-3102 + CTGGGTACTACGCCGAATGG 20 3088
BCLllA-3103 + CCGGGCCCGGACCACTAATA 20 3089
BCLllA-3104 - CCGCGGGTTGGTATCCCTTC 20 3090
BCLllA-3105 + TCTGGGTACTACGCCGAATG 20 3091
BCLllA-3106 + GGATACCAACCCGCGGGGTC 20 3092
BCLllA-3107 - ACGCCCCATATTAGTGGTCC 20 3093
BCLllA-3108 - CACTTGCGACGAAGACTCGG 20 3094
BCLllA-3109 + TCTCTGGGTACTACGCCGAA 20 3095
BCLllA-3110 - TAAGCGCATCAAGCTCGAGA 20 3096
BCLllA-3111 - TGCGACGAAGACTCGGTGGC 20 3097
BCLllA-3112 + CGCGCTTATGCTTCTCGCCC 20 3098
BCLllA-3113 + TGAAGGGATACCAACCCGCG 20 3099
BCLllA-3114 + GGGCCCGGACCACTAATATG 20 3100 BCLllA-3115 + CGTGTTGGGCATCGCGGCCG 20 3101
BCLllA-3116 + TCCGTGTTG GG CATCG CG G C 20 3102
BCLllA-3117 + GTCGGACTTGACCGTCATGG 20 3103
BCLllA-3118 + GCGCAAACTCCCGTTCTCCG 20 3104
BCLllA-3119 + CTCCGAGGAGTGCTCCGACG 20 3105
BCLllA-3120 + C ACG G ACTTG AG CG CG CTG C 20 3106
BCLllA-3121 - CACGCCCCATATTAGTGGTC 20 3107
BCLllA-3122 + GATACCAACCCGCGGGGTCA 20 3108
BCLllA-3123 - CAGCGCGCTCAAGTCCGTGG 20 3109
BCLllA-3124 + GGGTGCACGCGTGGTCGCAC 20 3110
BCLllA-3125 - G A AG C ATAAG CG CG G CC ACC 20 3111
BCLllA-3126 - GTGCGACCACGCGTGCACCC 20 3112
BCLllA-3127 + GAGTACACGTTCTCCGTGTT 20 3113
BCLllA-3128 + GTCTCGGTGGTGGACTAAAC 20 3114
BCLllA-3129 + CCGTTCTCCGGGATCAGGTT 20 3115
BCLllA-3130 + CGAGTACACGTTCTCCGTGT 20 3116
BCLllA-3131 - CGGAGAACGTGTACTCGCAG 20 3117
BCLllA-3132 - GGGAGCACGCCCCATATTAG 20 3118
BCLllA-3133 - CCATATTAGTGGTCCGGGCC 20 3119
BCLllA-3134 + GCCGCAGAACTCGCATGACT 20 3120
BCLllA-3135 + CGCCCCGCGAGCTGTTCTCG 20 3121
BCLllA-3136 - GCAGTGGCTCGCCGGCTACG 20 3122
BCLllA-3137 - CATATTAGTGGTCCGGGCCC 20 3123
BCLllA-3138 + CTGAAGGGATACCAACCCGC 20 3124
BCLllA-3139 + ATACCAACCCGCGGGGTCAG 20 3125
BCLllA-3140 - CAGCAGCGCGCTCAAGTCCG 20 3126
BCLllA-3141 + CGTCCCCGTTCTCCGGGATC 20 3127
BCLllA-3142 - CACCACG AG AACAG CTCG CG 20 3128
BCLllA-3143 - GCGGTTGAATCCAATGGCTA 20 3129
BCLllA-3144 - GGACACTTGCGACGAAGACT 20 3130
BCLllA-3145 + GTGTTGGGCATCGCGGCCGG 20 3131
BCLllA-3146 + CTTCGTCGCAAGTGTCCCTG 20 3132
BCLllA-3147 + CCCCAGGCGCTCTATGCGGT 20 3133
BCLllA-3148 + CCGTGTTGGGCATCGCGGCC 20 3134
BCLllA-3149 + CGTTCTCCGGGATCAGGTTG 20 3135
BCLllA-3150 + G CCTCTCTCG ATACTG ATCC 20 3136
BCLllA-3151 + TCGCATGACTTGG ACTTG AC 20 3137
BCLllA-3152 - ATCACCCGAGTGCCTTTGAC 20 3138
BCLllA-3153 - TAAGCGCGGCCACCTGGCCG 20 3139
BCLllA-3154 - GCACAAATCGTCCCCCATGA 20 3140
BCLllA-3155 - CGCCCTGCCCGACGTCATGC 20 3141
BCLllA-3156 - CAACCTGATCCCGGAGAACG 20 3142 BCLllA-3157 - CGGAGCACTCCTCGGAGAAC 20 3143
BCLllA-3158 - AGACTCGGTGGCCGGCGAGT 20 3144
BCLllA-3159 + GGCGGTGGAGAGACCGTCGT 20 3145
BCLllA-3160 - GTGTACTCG CAGTG GCTCGC 20 3146
BCLllA-3161 - TCGGAGCACTCCTCGGAGAA 20 3147
BCLllA-3162 - CCCGGCCGCGATGCCCAACA 20 3148
BCLllA-3163 + CCCGTTCTCCGGGATCAGGT 20 3149
BCLllA-3164 + TCGGTGGTGGACTAAACAGG 20 3150
BCLllA-3165 + CCTGAAGGGATACCAACCCG 20 3151
BCLllA-3166 + GTCGTTCTCG CTCTTG AACT 20 3152
BCLllA-3167 - CCCCACCGCATAGAGCGCCT 20 3153
BCLllA-3168 + GTCGCTGGTGCCGGGTTCCG 20 3154
BCLllA-3169 - CGAGAACAGCTCGCGGGGCG 20 3155
BCLllA-3170 + CGCATGACTTGGACTTGACC 20 3156
BCLllA-3171 - CCCACCGCATAGAGCGCCTG 20 3157
BCLllA-3172 + AAGTCGCTGGTGCCGGGTTC 20 3158
BCLllA-3173 + CGAGGAGTGCTCCGACGAGG 20 3159
BCLllA-3174 - TCCCCGGGCGAGTCGGCCTC 20 3160
BCLllA-3175 - CTCCCCGGGCGAGTCGGCCT 20 3161
BCLllA-3176 + CATGACTTGGACTTGACCGG 20 3162
BCLllA-3177 - AGCTCGCGGGGCGCGGTCGT 20 3163
BCLllA-3178 + TGCTCCGACGAGGAGGCAAA 20 3164
BCLllA-3179 + CTTTTTGGACAGGCCCCCCG 20 3165
BCLllA-3180 - CTACGGCTTCGGGCTGAGCC 20 3166
BCLllA-3181 - CCCCGGGCGAGTCGGCCTCG 20 3167
BCLllA-3182 + TAA CAGTG CCATCGTCTATG 20 3168
BCLllA-3183 - CTCCTCGTCGGAGCACTCCT 20 3169
BCLllA-3184 - CCCGGCACCAGCGACTTGGT 20 3170
BCLllA-3185 - GCGCTTCTCCACACCGCCCG 20 3171
BCLllA-3186 + CTCGGTGGTGGACTAAACAG 20 3172
BCLllA-3187 - CCCCCACCGCATAGAGCGCC 20 3173
BCLllA-3188 - GATCCCGGAGAACGGGGACG 20 3174
BCLllA-3189 + CCAGGCGCTCTATGCGGTGG 20 3175
BCLllA-3190 - TTAGTGGTCCGGGCCCGGGC 20 3176
BCLllA-3191 + CCCAGGCGCTCTATGCGGTG 20 3177
BCLllA-3192 - CGGCTGCTCCCCGGGCGAGT 20 3178
BCLllA-3193 - TCGCCGGCTACGCGGCCTCC 20 3179
BCLllA-3194 - ATCGAGAGAGGCTTCCGGCC 20 3180
BCLllA-3195 + GGGTCCAAGTGATGTCTCGG 20 3181
BCLllA-3196 - ATCGCCTTTTGCCTCCTCGT 20 3182
BCLllA-3197 - ATCTCGGGGCGCAGCGGCAC 20 3183
BCLllA-3198 + CGGTGGTGGACTAAACAGGG 20 3184 BCLllA-3199 - GATGGCACTGTTAATGGCCG 20 3185
BCLllA-3200 + TGCCCTGCATGACGTCGGGC 20 3186
BCLllA-3201 + TCTCGGTGGTGGACTAAACA 20 3187
BCLllA-3202 - AGAGGGTGGACTACGGCTTC 20 3188
BCLllA-3203 + CCCCGAGGCCGACTCGCCCG 20 3189
BCLllA-3204 - GATCTCGGGGCGCAGCGGCA 20 3190
BCLllA-3205 - ACGGAAGTCCCCTGACCCCG 20 3191
BCLllA-3206 + ACTCGCCCGGGGAGCAGCCG 20 3192
BCLllA-3207 - TTG CG CTTCTCCAC ACCG CC 20 3193
BCLllA-3208 - GGAACCCGGCACCAGCGACT 20 3194
BCLllA-3209 + GCATGACTTGGACTTGACCG 20 3195
BCLllA-3210 - TAATGGCCGCGGCTGCTCCC 20 3196
BCLllA-3211 - CCGGGCGAGTCGGCCTCGGG 20 3197
BCLllA-3212 + GTCAAAGG CACTCG G GTG AT 20 3198
BCLllA-3213 - G GTG CTG CG GTTG A ATC C A A 20 3199
BCLllA-3214 - CTGGGCGAGAAGCATAAGCG 20 3200
BCLllA-3215 + ACTTGGACTTGACCGGGGGC 20 3201
BCLllA-3216 + CCCCCCGAGGCCGACTCGCC 20 3202
BCLllA-3217 - CCACCGCATAGAGCGCCTGG 20 3203
BCLllA-3218 + AGTCGCTGGTGCCGGGTTCC 20 3204
BCLllA-3219 + TCGCACAGGTTGCACTTGTA 20 3205
BCLllA-3220 + GCCCTGCATGACGTCGGGCA 20 3206
BCLllA-3221 + CCGCCCCCAGGCGCTCTATG 20 3207
BCLllA-3222 - GCCCTGCCCGACGTCATGCA 20 3208
BCLllA-3223 + GTCGCACAG GTTG CACTTGT 20 3209
BCLllA-3224 - AGGTAGCAAGCCGCCCTTCC 20 3210
BCLllA-3225 - CCAACCTGATCCCGGAGAAC 20 3211
BCLllA-3226 + AGGAAGGGCGGCTTGCTACC 20 3212
BCLllA-3227 - GAAGGAGTTCGACCTGCCCC 20 3213
BCLllA-3228 + CTTGGACTTGACCGGGGGCT 20 3214
BCLllA-3229 - GAGAGGGTGGACTACGGCTT 20 3215
BCLllA-3230 - TCCAAGTCATGCGAGTTCTG 20 3216
BCLllA-3231 - ACCCGGCACCAGCGACTTGG 20 3217
BCLllA-3232 + CCCCCAGGCGCTCTATGCGG 20 3218
BCLllA-3233 + GCGTCTGCCCTCTTTTGAGC 20 3219
BCLllA-3234 - GCCCGACGTCATGCAGGGCA 20 3220
BCLllA-3235 + GAGCTTGATGCGCTTAGAGA 20 3221
BCLllA-3236 - CAGCTCGCGGGGCGCGGTCG 20 3222
BCLllA-3237 + CGTGGTGGCGCGCCGCCTCC 20 3223
BCLllA-3238 - TCACCCGAGTGCCTTTGACA 20 3224
BCLllA-3239 - GAACGACCCCAACCTGATCC 20 3225
BCLllA-3240 + CAACCGCAGCACCCTGTCAA 20 3226 BCLllA-3241 + TCCAAGTGATGTCTCGGTGG 20 3227
BCLllA-3242 + GTTCTCCGTGTTGGGCATCG 20 3228
BCLllA-3243 - CGGAAGTCCCCTGACCCCGC 20 3229
BCLllA-3244 + TATGCTTCTCGCCCAGGACC 20 3230
BCLllA-3245 - AGCTGGACGGAGGGATCTCG 20 3231
BCLllA-3246 + GGCTGCGCCGGTGCACCACC 20 3232
BCLllA-3247 - GTTG GTATCCCTTCAG G ACT 20 3233
BCLllA-3248 - ATAGACGATGGCACTGTTAA 20 3234
BCLllA-3249 - CTCCCGCCATGGATTTCTCT 20 3235
BCLllA-3250 - ACCAGGATCAGTATCGAGAG 20 3236
BCLllA-3251 - AGTCCCCTGACCCCGCGGGT 20 3237
BCLllA-3252 + GTCTGGAGTCTCCGAAGCTA 20 3238
BCLllA-3253 - GCCGGCCCAG C CCTATG C A A 20 3239
BCLllA-3254 - GATGTGTGGCAGTTTTCGGA 20 3240
BCLllA-3255 + CTAGAGAAATCCATGGCGGG 20 3241
BCLllA-3256 + GGCGCTGCCCACCAAGTCGC 20 3242
BCLllA-3257 - CCCGGGCGAGTCGGCCTCGG 20 3243
BCLllA-3258 - ACACCGCCCGGGGAGCTGGA 20 3244
BCLllA-3259 + CAGTAACCTTTGCATAGGGC 20 3245
BCLllA-3260 - TCAGTATCGAGAGAGGCTTC 20 3246
BCLllA-3261 + GCATGACGTCGGGCAGGGCG 20 3247
BCLllA-3262 - C CG CAT AG AG CGCCTGGGGG 20 3248
BCLllA-3263 + CCCCCGAGGCCGACTCGCCC 20 3249
BCLllA-3264 + AGGGCGGCTTGCTACCTGGC 20 3250
BCLllA-3265 + GCACCCTGTCAAAGGCACTC 20 3251
BCLllA-3266 + CTG ATC CTG GTATTCTT AG C 20 3252
BCLllA-3267 + CATGTGGCGCTTCAGCTTGC 20 3253
BCLllA-3268 + CCCACCAAGTCGCTGGTGCC 20 3254
BCLllA-3269 + GGAGGCAAAAGGCGATTGTC 20 3255
BCLllA-3270 - CCCAACCTGATCCCGGAGAA 20 3256
BCLllA-3271 + GAGTCTCCGAAGCTAAGGAA 20 3257
BCLllA-3272 - GGCTATGGAGCCTCCCGCCA 20 3258
BCLllA-3273 + CGTCTGCCCTCTTTTGAGCT 20 3259
BCLllA-3274 - CGCCCGGGGAGCTGGACGGA 20 3260
BCLllA-3275 + AGTAACCTTTGCATAGGGCT 20 3261
BCLllA-3276 - TCCACCACCGAGACATCACT 20 3262
BCLllA-3277 + GGTTGCAGTAACCTTTGCAT 20 3263
BCLllA-3278 + G C A AT ATG A ATC CC ATG GAG 20 3264
BCLllA-3279 + ACCATGCCCTGCATGACGTC 20 3265
BCLllA-3280 + GGCCTCGCTGAAGTGCTGCA 20 3266
BCLllA-3281 - AGAGCAACCTGGTGGTGCAC 20 3267
BCLllA-3282 + GCCCACCAAGTCGCTGGTGC 20 3268 BCLllA-3283 + TGTCAAAGGCACTCGGGTGA 20 3269
BCLllA-3284 + AGCTTGATGCGCTTAGAGAA 20 3270
BCLllA-3285 + AGGGGGGGCGTCGCCAGGAA 20 3271
BCLllA-3286 + GTGGAAAGCGCCCTTCTGCC 20 3272
BCLllA-3287 + TGGGGGTCCAAGTGATGTCT 20 3273
BCLllA-3288 - CTCCATG CAG CACTTCAG CG 20 3274
BCLllA-3289 + G CG CTTC AG CTTG CTG G C CT 20 3275
BCLllA-3290 - CTTCAGCGAGGCCTTCCACC 20 3276
BCLllA-3291 + GGAGTCTCCGAAGCTAAGGA 20 3277
BCLllA-3292 + CACTCGGGTGATGGGTGGCC 20 3278
BCLllA-3293 - TGCGCTTCTCCACACCGCCC 20 3279
BCLllA-3294 + GGTGGTGGACTAAACAGGGG 20 3280
BCLllA-3295 - CGAGGCCTTCCACCAGGTCC 20 3281
BCLllA-3296 - AATGGCCGCGGCTGCTCCCC 20 3282
BCLllA-3297 + GTTGTACATGTGTAG CTG CT 20 3283
BCLllA-3298 - GTTCTTCACACACCCCCATT 20 3284
BCLllA-3299 - CGCAGCGGCACGGGAAGTGG 20 3285
BCLllA-3300 + GCGGGAGG CTCC ATAG C CAT 20 3286
BCLllA-3301 - GGTGCACCGGCGCAGCCACA 20 3287
BCLllA-3302 - CTCCACACCGCCCGGGGAGC 20 3288
BCLllA-3303 + A AAG CG CCCTTCTG CC AG G C 20 3289
BCLllA-3304 + ACTCGGGTGATGGGTGGCCA 20 3290
BCLllA-3305 + CTGCCTGGAGGCCGCGTAGC 20 3291
BCLllA-3306 + GTCCAGCTCCCCGGGCGGTG 20 3292
BCLllA-3307 - GAG CTG G A CG G AG G G ATCTC 20 3293
BCLllA-3308 - TCTAGCCCACCGCTGTCCCC 20 3294
BCLllA-3309 + AGTTGTACATGTGTAG CTG C 20 3295
BCLllA-3310 + ATTCTGCACCTAGTCCTGAA 20 3296
BCLllA-3311 - CCACCACGAGAACAGCTCGC 20 3297
BCLllA-3312 + CTCCTAGAGAAATCCATGGC 20 3298
BCLllA-3313 - TTTAACCTG CTAAG AATACC 20 3299
BCLllA-3314 + GGACTAAACAGGGGGGGAGT 20 3300
BCLllA-3315 - GGCCACCTGGCCGAGGCCGA 20 3301
BCLllA-3316 + G G CTTG CTAC CTG G CTG G A A 20 3302
BCLllA-3317 + CATTCTGCACCTAGTCCTGA 20 3303
BCLllA-3318 + TGCTGGCCTGGGTGCACGCG 20 3304
BCLllA-3319 + TGTGGCCCTCGGCCTCGGCC 20 3305
BCLllA-3320 - CCGCCCGGGGAGCTGGACGG 20 3306
BCLllA-3321 - TGGCCGAGGCCGAGGGCCAC 20 3307
BCLllA-3322 + TGGGCATCGCGGCCGGGGGC 20 3308
BCLllA-3323 + TCTCCTAGAGAAATCCATGG 20 3309
BCLllA-3324 + GGGCCATCTCTTCCGCCCCC 20 3310 BCLllA-3325 + GTTGCAGTAACU 1 I GCATA 20 3311
BCLllA-3326 + AAAGGCACTCGGGTGATGGG 20 3312
BCLllA-3327 + GAAGGGATCTTTGAGCTGCC 20 3313
BCLllA-3328 + G CC ACAC ATCTTG AG CTCTC 20 3314
BCLllA-3329 - GGAGGGATCTCGGGGCGCAG 20 3315
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 3316
BCLllA-3331 + TGCATAGGGCTGGGCCGGCC 20 3317
BCLllA-3332 - CGGGGCGCGGTCGTGGGCGT 20 3318
BCLllA-3333 + GAGGGGGGGCGTCGCCAGGA 20 3319
BCLllA-3334 - ACCGCCAGCTCCCCGGAACC 20 3320
BCLllA-3335 + G GTATTCTTAG CAG GTTAAA 20 3321
BCLllA-3336 - AGGCTTCCGGCCTGGCAGAA 20 3322
BCLllA-3337 + GATCCCTCCGTCCAGCTCCC 20 3323
BCLllA-3338 + TGGTATTCTTAGCAGGTTAA 20 3324
BCLllA-3339 - ATCT ACTTAG A A AG CG A AC A 20 3325
BCLllA-3340 - CGGCCACCTGGCCGAGGCCG 20 3326
BCLllA-3341 - CAACACG CACAG AACACTCA 20 3327
BCLllA-3342 + GCCGGCCTGGGGACAGCGGT 20 3328
BCLllA-3343 - GCCACCACGAGAACAGCTCG 20 3329
BCLllA-3344 + GTATTCTTAGCAGGTTAAAG 20 3330
BCLllA-3345 - CTCTAGGAGACTTAGAGAGC 20 3331
BCLllA-3346 - AACAG CC ATTC ACC AGTG CA 20 3332
BCLllA-3347 + TTGCAAGAGAAACCATGCAC 20 3333
BCLllA-3348 + GACTTGACCGGGGGCTGGGA 20 3334
BCLllA-3349 + ACCTTTGCATAGGGCTGGGC 20 3335
BCLllA-3350 + TCTTTTGAGCTGGGCCTGCC 20 3336
BCLllA-3351 - GAGGCCTTCCACCAGGTCCT 20 3337
BCLllA-3352 + CTTTTGAGCTGGGCCTGCCC 20 3338
BCLllA-3353 + GGGATCTTTGAGCTGCCTGG 20 3339
BCLllA-3354 - GGGCAGGCCCAGCTCAAAAG 20 3340
BCLllA-3355 + AG C ACCCTGTC AAAG G CACT 20 3341
BCLllA-3356 + TGGACTAAACAGGGGGGGAG 20 3342
BCLllA-3357 + GCTCTTGAACTTGGCCACCA 20 3343
BCLllA-3358 + GAATCCCATGGAGAGGTGGC 20 3344
BCLllA-3359 - GTGCACCGGCGCAGCCACAC 20 3345
BCLllA-3360 - AAAG ATC CCTTC CTTAG CTT 20 3346
BCLllA-3361 + TGTCTGCAATATGAATCCCA 20 3347
BCLllA-3362 - GGCAGGCCCAGCTCAAAAGA 20 3348
BCLllA-3363 + CCTCCGTCCAGCTCCCCGGG 20 3349
BCLllA-3364 - CTGTCC AAAAAG CTG CTG CT 20 3350
BCLllA-3365 + G CTTGATG CG CTTAG AG AAG 20 3351
BCLllA-3366 - CGGCTTCGGGCTGAGCCTGG 20 3352 BCLllA-3367 + C ACC ATG CCCTG CATGACGT 20 3353
BCLllA-3368 - 1 CAAGA 1 1 1 GCA 1 1 1 1 20 3354
BCLllA-3369 - GTTC AAATTTC AG AG CAACC 20 3355
BCLllA-3370 + GAGAAGGGGCTCAGCGAGCT 20 3356
BCLllA-3371 - GCAGCGGCACGGGAAGTGGA 20 3357
BCLllA-3372 + AAGTCTCCTAGAGAAATCCA 20 3358
BCLllA-3373 + GGTGCCGGGTTCCGGGGAGC 20 3359
BCLllA-3374 - CCTGTCCAAAAAG CTG CTG C 20 3360
BCLllA-3375 + ATATGAATCCCATGGAGAGG 20 3361
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 3362
BCLllA-3377 - GGCCGAGGCCGAGGGCCACA 20 3363
BCLllA-3378 + GCAAGTGTCCCTGTGGCCCT 20 3364
BCLllA-3379 + GGACTTGACCGGGGGCTGGG 20 3365
BCLllA-3380 + GCTTCTCGCCCAGGACCTGG 20 3366
BCLllA-3381 - GCGCCTGGGGGCGGAAGAGA 20 3367
BCLllA-3382 + GTCCCTGTGGCCCTCGGCCT 20 3368
BCLllA-3383 + ATCCCTCCGTCCAGCTCCCC 20 3369
BCLllA-3384 - GTGCCTTTGACAGGGTGCTG 20 3370
BCLllA-3385 - CCCAGAGAGCTCAAGATGTG 20 3371
BCLllA-3386 + GGCCCTCGGCCTCGGCCAGG 20 3372
BCLllA-3387 - GAGAGCGAGAGGGTGGACTA 20 3373
BCLllA-3388 + GGGGGCGTCGCCAGGAAGGG 20 3374
BCLllA-3389 + AGAGAAGGGGCTCAGCGAGC 20 3375
BCLllA-3390 + CC ACAC ATCTTG AG CTCTCT 20 3376
BCLllA-3391 + GCTGCCCAGCAGCAG CTTTT 20 3377
BCLllA-3392 - GGAGCTGGACGGAGGGATCT 20 3378
BCLllA-3393 - GGGGGCGGAAGAGATGGCCC 20 3379
BCLllA-3394 - AGGAGACTTAGAGAGCTGGC 20 3380
BCLllA-3395 - GAGGCTTCCGGCCTGGCAGA 20 3381
BCLllA-3396 + AATCCCATGGAGAGGTGGCT 20 3382
BCLllA-3397 + TGTG CATGTG CGTCTTCATG 20 3383
BCLllA-3398 + CTCGCCCAGGACCTGGTGGA 20 3384
BCLllA-3399 + TCCTCCTCGTCCCCGTTCTC 20 3385
BCLllA-3400 + AGAAACCATGCACTGGTGAA 20 3386
BCLllA-3401 - CTTCGGGCTGAGCCTGGAGG 20 3387
BCLllA-3402 + GCCGGGTTCCGGGGAGCTGG 20 3388
BCLllA-3403 + AGAAGGGGCTCAGCGAGCTG 20 3389
BCLllA-3404 + CTAAACAGGGGGGGAGTGGG 20 3390
BCLllA-3405 - CAAATTTCAGAGCAACCTGG 20 3391
BCLllA-3406 + GAGGGAGGGGGGGCGTCGCC 20 3392
BCLllA-3407 + CCTCCTCGTCCCCGTTCTCC 20 3393
BCLllA-3408 + CCAGCAGCAGCTTTTTGGAC 20 3394 BCLllA-3409 - GCCCACCGCTGTCCCCAGGC 20 3395
BCLllA-3410 - GGAGACTTAGAGAGCTGGCA 20 3396
BCLllA-3411 - AGGAGCTGACGGAGAGCGAG 20 3397
BCLllA-3412 + GAGGGGCGGATTGCAGAGGA 20 3398
BCLllA-3413 + C ATAG GGCTGGGCCGGCCTG 20 3399
BCLllA-3414 + GGCGGATTGCAGAGGAGGGA 20 3400
BCLllA-3415 + GGAGGGGCGGATTGCAGAGG 20 3401
BCLllA-3416 - TTACTGCAACCATTCCAGCC 20 3402
BCLllA-3417 + GCATAGGGCTGGGCCGGCCT 20 3403
BCLllA-3418 + GGGCGGATTGCAGAGGAGGG 20 3404
BCLllA-3419 + GGGTTCCGGGGAGCTGGCGG 20 3405
BCLllA-3420 + TCTCGCCCGTGTGGCTGCGC 20 3406
BCLllA-3421 - CTTCCCAGCCACCTCTCCAT 20 3407
BCLllA-3422 - GCTGACGGAGAGCGAGAGGG 20 3408
BCLllA-3423 + GCGGATTGCAGAGGAGGGAG 20 3409
BCLllA-3424 - GGAGCTGACGGAGAGCGAGA 20 3410
BCLllA-3425 - TCTCTCCACCGCCAGCTCCC 20 3411
BCLllA-3426 + TTGACCGGGGGCTGGGAGGG 20 3412
BCLllA-3427 + CGGATTGCAGAGGAGGGAGG 20 3413
BCLllA-3428 - GCGGGGCGCGGTCGTGGGCG 20 3414
BCLllA-3429 + GAGCTGGGCCTGCCCGGGCC 20 3415
BCLllA-3430 + CTGGGCCGGCCTGGGGACAG 20 3416
BCLllA-3431 + TGTAGGGCTTCTCGCCCGTG 20 3417
BCLllA-3432 + CCATGGAGAGGTGGCTGGGA 20 3418
BCLllA-3433 + GGAGGAGGGGCGGATTGCAG 20 3419
BCLllA-3434 - CCTTCCCAGCCACCTCTCCA 20 3420
BCLllA-3435 + CCCGCGAGCTGTTCTCGTGG 20 3421
BCLllA-3436 + GATTGCAGAGGAGGGAGGGG 20 3422
BCLllA-3437 + GGCCGGCCTGGGGACAGCGG 20 3423
BCLllA-3438 + GGATTGCAGAGGAGGGAGGG 20 3424
BCLllA-3439 + ACCGGGGGCTGGGAGGGAGG 20 3425
BCLllA-3440 + CCGGGGGCTGGGAGGGAGGA 20 3426
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 3427
BCLllA-3442 - CCCTCCTCCCTCCCAGCCCC 20 3428
BCLllA-3443 + CGGGGGCTGGGAGGGAGGAG 20 3429
BCLllA-3444 + G G CG CTTC AG CTTG CTG G CC 20 3430
BCLllA-3445 - CGGGGACGAGGAGGAAGAGG 20 3431
BCLllA-3446 - AGAGGAGGAGGAGGAGCTGA 20 3432
BCLllA-3447 + GGGCTGGGAGGGAGGAGGGG 20 3433
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 3434
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 3435
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 3436 BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 3437
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 3438
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 3439
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 3440
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 3441
Table 4A provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to first tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 4A
Figure imgf000200_0001
BCLllA-3459 - GATTGTTTATCAACGTCATC 20 3445
BCLllA-3460 + GCACTCATCCCAGGCGT 17 3446
BCLllA-3461 + GGGGATTAGAGCTCCATGTG 20 3447
BCLllA-3462 - GTGCAGAATATGCCCCG 17 3448
Table 4B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 4B
Figure imgf000201_0001
BCLllA-3464 + AATTCCCGTTTGCTTAAGTG 20 3450
BCLllA-3465 - ACCAGACCACGGCCCGT 17 3451
BCLllA-3466 - ATGAACCAGACCACGGCCCG 20 3452
BCLllA-3467 + ATTCCCGTTTGCTTAAGTGC 20 3453
BCLllA-3468 - CCAGACCACGGCCCGTT 17 3454
BCLllA-3469 + CCCGTTTGCTTAAGTGC 17 3455
BCLllA-3470 + CCTGGATGCCAACCTCC 17 3456
BCLllA-3471 + CTGGATGCCAACCTCCA 17 3457
BCLllA-3472 + TCATCCTCTGGCGTGAC 17 3458
BCLllA-3473 + TCCCGTTTGCTTAAGTG 17 3459
BCLllA-3474 + TCGTCATCCTCTGGCGTGAC 20 3460
BCLllA-3475 + TCTG CACTCATCCCAGG CGT 20 3461
BCLllA-3476 + TCTG GTTC ATC ATCTGT 17 3462
BCLllA-3477 - TGAACCAGACCACGGCCCGT 20 3463
BCLllA-3478 + TGACCTGGATGCCAACCTCC 20 3464
BCLllA-3479 - TGAGTGCAGAATATGCCCCG 20 3465
BCLllA-3480 + TG CACTCATCCCAGG CG 17 3466
BCLllA-3481 + TGGTCTGGTTCATCATCTGT 20 3467
BCLllA-3482 - TGTTTATCAACGTCATC 17 3468
BCLllA-3483 - TGTTTATCAACGTCATCTAG 20 3469
BCLllA-3484 - TTATCAACGTCATCTAG 17 3470
BCLllA-3485 + TTCTGCACTCATCCCAGGCG 20 3471
BCLllA-3486 - TTGTTTATCAACGTCATCTA 20 3472
BCLllA-3487 - TTTATCAACGTCATCTA 17 3473
Table 4C provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to third tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 4C
Figure imgf000203_0001
Table 4D provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to forth tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 4D
Figure imgf000204_0001
BCLllA-3521 + AATAAGAATGTCCCCCA 17 3507
BCLllA-3522 - ACCCC AG C ACTTAAG CAAAC 20 3508
BCLllA-3523 - ACCTTCCCCTTCACCAA 17 3509
BCLllA-3524 + AGAGCTCCATGTGCAGA 17 3510
BCLllA-3525 + AGAGCTCCATGTGCAGAACG 20 3511
BCLllA-3526 - AGATGAACTTCCCATTG 17 3512
BCLllA-3527 - AG CCATTCTTACAG ATG 17 3513
BCLllA-3528 + AGCTCCATGTGCAGAAC 17 3514
BCLllA-3529 + AGCTCCATGTGCAGAACGAG 20 3515
BCLllA-3530 - AGCTCTAATCCCCACGC 17 3516
BCLllA-3531 - AGGAATTTGCCCCAAAC 17 3517
BCLllA-3532 + AGGAGGTCATGATCCCCTTC 20 3518
BCLllA-3533 + AGGTCATGATCCCCTTC 17 3519
BCLllA-3534 - AGTGCCAGATGAACTTCCCA 20 3520
BCLllA-3535 + ATAAGAATGTCCCCCAA 17 3521
BCLllA-3536 + ATCCCAGGCGTGGGGAT 17 3522
BCLllA-3537 + ATCCCCTTCTGGAGCTCCCA 20 3523
BCLllA-3538 + ATCTGG CACTG CCCACAGGT 20 3524
BCLllA-3539 - ATG CAATG G CAG CCTCTG CT 20 3525
BCLllA-3540 + ATGTGCAGAACGAGGGG 17 3526
BCLllA-3541 + ATTAGAGCTCCATGTGCAGA 20 3527
BCLllA-3542 + ATTCTG CACTC ATCCC AG G C 20 3528
BCLllA-3543 - A l l l l 1 A l CGAGCACAA 17 3529
BCLllA-3544 - CAATGG CAG CCTCTG CT 17 3530
BCLllA-3545 - CACGCCTGGGATGAGTG 17 3531
BCLllA-3546 - CAGATGAACTTCCCATT 17 3532
BCLllA-3547 + CATCTCGATTGGTGAAG 17 3533
BCLllA-3548 + CATGTGCAGAACGAGGG 17 3534
BCLllA-3549 + CATGTGCAGAACGAGGGGAG 20 3535
BCLllA-3550 + CC ACAG CTTTTTCTAAG 17 3536
BCLllA-3551 - CCACGGCCCGTTGGGAGCTC 20 3537
BCLllA-3552 - CCAGATGAACTTCCCAT 17 3538
BCLllA-3553 - CCAGC ACTTAAG CAAAC 17 3539
BCLllA-3554 - CCCAGCACTTAAGCAAA 17 3540
BCLllA-3555 - CCCCACGCCTGGGATGAGTG 20 3541
BCLllA-3556 - CCCCAGCACTTAAGCAA 17 3542
BCLllA-3557 - CCCCTTCACCAATCGAG 17 3543
BCLllA-3558 - CCCGTTGGGAGCTCCAG 17 3544
BCLllA-3559 + CCCTTCTGGAGCTCCCA 17 3545
BCLllA-3560 - CCGTTGGGAGCTCCAGA 17 3546
BCLllA-3561 - CCTGTGGGCAGTGCCAG 17 3547
BCLllA-3562 - CGGCCCGTTGGGAGCTC 17 3548 BCLllA-3563 - CGGCCCGTTGGGAGCTCCAG 20 3549
BCLllA-3564 - CGTTG G G AG CTC C AG A A 17 3550
BCLllA-3565 + CGTTTGTG CTCG ATAAAAAT 20 3551
BCLllA-3566 - CTAGAGGAATTTGCCCCAAA 20 3552
BCLllA-3567 + CTCATCCCAGGCGTGGGGAT 20 3553
BCLllA-3568 + CTCCATGTGCAGAACGA 17 3554
BCLllA-3569 + CTCCATGTGCAGAACGAGGG 20 3555
BCLllA-3570 - CTCCCCTCGTTCTGCAC 17 3556
BCLllA-3571 - CTCCTCCCCTCGTTCTGCAC 20 3557
BCLllA-3572 - CTCTAATCCCCACGCCTGGG 20 3558
BCLllA-3573 + CTGCACTCATCCCAGGC 17 3559
BCLllA-3574 - CTTATTTTTATCGAGCACAA 20 3560
BCLllA-3575 - CTTCCCCTTCACCAATCGAG 20 3561
BCLllA-3576 + TAAGAATGTCCCCCAAT 17 3562
BCLllA-3577 - TAATCCCCACGCCTGGG 17 3563
BCLllA-3578 + TAG AG CTC C ATGTG C AG A A C 20 3564
BCLllA-3579 - TAGAGGAATTTGCCCCAAAC 20 3565
BCLllA-3580 + TATCCACAG CTTTTTCTAAG 20 3566
BCLllA-3581 - TCACCTGTGGGCAGTGCCAG 20 3567
BCLllA-3582 + TCATCTCGATTGGTGAA 17 3568
BCLllA-3583 + TCATCTG G C ACTG CCC AC AG 20 3569
BCLllA-3584 + TC ATCTGTA AG A ATG GCTTC 20 3570
BCLllA-3585 - TCATGACCTCCTCACCT 17 3571
BCLllA-3586 + TCCATGTGCAGAACGAG 17 3572
BCLllA-3587 + TCCATGTGCAGAACGAGGGG 20 3573
BCLllA-3588 - TCCCCTCGTTCTGCACA 17 3574
BCLllA-3589 - TCCTCCCCTCGTTCTGCACA 20 3575
BCLllA-3590 - TCTG CTTAG AAAAAG CT 17 3576
BCLllA-3591 + TCTG G C ACTG CCC ACAG 17 3577
BCLllA-3592 + TCTGGCACTGCCCACAGGTG 20 3578
BCLllA-3593 + TCTGTAAG AATG GCTTC 17 3579
BCLllA-3594 - TGAAAAAAGCATCCAATCCC 20 3580
BCLllA-3595 - TGAAGCCATTCTTACAGATG 20 3581
BCLllA-3596 + TGCCAACCTCCACGGGA 17 3582
BCLllA-3597 - TGCCAGATGAACTTCCCATT 20 3583
BCLllA-3598 + TG CTTTTTTCATCTCG ATTG 20 3584
BCLllA-3599 - TGGAGCTCTAATCCCCACGC 20 3585
BCLllA-3600 + TGGCACTGCCCACAGGT 17 3586
BCLllA-3601 - TGGCATCCAGGTCACGC 17 3587
BCLllA-3602 + TGGGGTTTGCCTTGCTTGCG 20 3588
BCLllA-3603 - 1 I A I 1 1 1 1 A I A A AAA 20 3589
BCLllA-3604 + TTCATCTCGATTGGTGA 17 3590 BCLllA-3605 - TTGGCATCCAGGTCACGCCA 20 3591
BCLllA-3606 + TTGTG CTCG ATAAAAAT 17 3592
BCLllA-3607 + TTTCATCTCGATTGGTG 17 3593
BCLllA-3608 + TTTCATCTCGATTGGTGAAG 20 3594
BCLllA-3609 + TTTTCATCTCGATTGGTGAA 20 3595
BCLllA-3610 - TTTTTATCGAGCACAAA 17 3596
BCLllA-3611 + TTTTTCATCTCGATTGGTGA 20 3597
BCLllA-3612 + TTTTTTCATCTCGATTG 17 3598
BCLllA-3613 + TTTTTTC ATCTCG ATTG GTG 20 3599
Table 4E provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to fifth tier parameters. The targeting domains target outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 4E 5th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-3614 + TCGTCGGACTTGACCGTCAT 20 3600
BCLllA-3615 + GTCGTCGGACTTGACCGTCA 20 3601
BCLllA-3616 + CGTCGTCGGACTTGACCGTC 20 3602
BCLllA-3617 + CGTCGGACTTGACCGTCATG 20 3603
BCLllA-3618 - CCCATATTAGTGGTCCGGGC 20 3604
BCLllA-3619 + GCGGTCCGACTCGCCGGCCA 20 3605
BCLllA-3620 + CTCCGAGGAGTGCTCCGACG 20 3606
BCLllA-3621 - CCCCCATTCGGCGTAGTACC 20 3607
BCLllA-3622 + TCTCCGAGGAGTGCTCCGAC 20 3608
BCLllA-3623 - CCCGCGGGTTGGTATCCCTT 20 3609
BCLllA-3624 + GCGAGTACACGTTCTCCGTG 20 3610
BCLllA-3625 - CCCATTCGGCGTAGTACCCA 20 3611
BCLllA-3626 + CTCCGTGTTGGGCATCGCGG 20 3612
BCLllA-3627 + CCGCGCTTATGCTTCTCGCC 20 3613
BCLllA-3628 - CG ACG AAG ACTCGGTGG CCG 20 3614
BCLllA-3629 - ACCCCCACCGCATAGAGCGC 20 3615
BCLllA-3630 + ACTACGCCGAATGGGGGTGT 20 3616
BCLllA-3631 + CCGGGCCCGGACCACTAATA 20 3617
BCLllA-3632 + CGCGTAGCCGGCGAGCCACT 20 3618
BCLllA-3633 - TCGGAGCACTCCTCGGAGAA 20 3619
BCLllA-3634 - CGGAGCACTCCTCGGAGAAC 20 3620
BCLllA-3635 + TCTCTGGGTACTACGCCGAA 20 3621
BCLllA-3636 + TGCCGCAGAACTCGCATGAC 20 3622
BCLllA-3637 + GATACCAACCCGCGGGGTCA 20 3623
BCLllA-3638 + GGATACCAACCCGCGGGGTC 20 3624
BCLllA-3639 + GGGATACCAACCCGCGGGGT 20 3625
BCLllA-3640 - CCCCCACCGCATAGAGCGCC 20 3626
BCLllA-3641 + GGTTGGGGTCGTTCTCGCTC 20 3627
BCLllA-3642 - GCACGCCCCATATTAGTGGT 20 3628
BCLllA-3643 - TAAGCGCATCAAGCTCGAGA 20 3629
BCLllA-3644 + GTTCTCCGAGGAGTGCTCCG 20 3630
BCLllA-3645 + TCTCG AG CTTGATG CG CTTA 20 3631
BCLllA-3646 - CT AAG CG CATC AAG CTCG AG 20 3632
BCLllA-3647 - GTCGGAGCACTCCTCGGAGA 20 3633
BCLllA-3648 - TGGCCGCGGCTGCTCCCCGG 20 3634
BCLllA-3649 - CCCCACCGCATAGAGCGCCT 20 3635
BCLllA-3650 + CCTGAAGGGATACCAACCCG 20 3636
BCLllA-3651 - GCGCTTCTCCACACCGCCCG 20 3637
BCLllA-3652 - GCGCCCTGCCCGACGTCATG 20 3638 BCLllA-3653 - AACCCGGCACCAGCGACTTG 20 3639
BCLllA-3654 + CTCTGGGTACTACGCCGAAT 20 3640
BCLllA-3655 + CCCGTTCTCCGGGATCAGGT 20 3641
BCLllA-3656 - GAACGACCCCAACCTGATCC 20 3642
BCLllA-3657 + ACGCCGAATGGGGGTGTGTG 20 3643
BCLllA-3658 + GTCGCTGGTGCCGGGTTCCG 20 3644
BCLllA-3659 - CCCCGGGCGAGTCGGCCTCG 20 3645
BCLllA-3660 + CG GTG CACCACCAG GTTG CT 20 3646
BCLllA-3661 - GTCCACCACCGAGACATCAC 20 3647
BCLllA-3662 - TTAATGGCCGCGGCTGCTCC 20 3648
BCLllA-3663 + CTCTCTGGGTACTACGCCGA 20 3649
BCLllA-3664 + GCGCAAACTCCCGTTCTCCG 20 3650
BCLllA-3665 + CCCGGGCCCGGACCACTAAT 20 3651
BCLllA-3666 + GCCCCCAGGCGCTCTATGCG 20 3652
BCLllA-3667 - ATCGCCTTTTGCCTCCTCGT 20 3653
BCLllA-3668 - CCTCGTCGGAGCACTCCTCG 20 3654
BCLllA-3669 + GAGCTTGATGCGCTTAGAGA 20 3655
BCLllA-3670 + CCCCGTTCTCCGGGATCAGG 20 3656
BCLllA-3671 - CGGCCGCGATGCCCAACACG 20 3657
BCLllA-3672 + GCCCCCCGAGGCCGACTCGC 20 3658
BCLllA-3673 - CCCGGCCGCGATGCCCAACA 20 3659
BCLllA-3674 - CTCCTCGTCGGAGCACTCCT 20 3660
BCLllA-3675 + GTCTCGGTGGTGGACTAAAC 20 3661
BCLllA-3676 + CCCCAGGCGCTCTATGCGGT 20 3662
BCLllA-3677 + GGTCGCACAGGTTGCACTTG 20 3663
BCLllA-3678 + AGTCGCTGGTGCCGGGTTCC 20 3664
BCLllA-3679 - CCCGGTCAAGTCCAAGTCAT 20 3665
BCLllA-3680 - AGAACGACCCCAACCTGATC 20 3666
BCLllA-3681 + TCCGTGTTG GG CATCG CG G C 20 3667
BCLllA-3682 - CCTCCTCGTCGGAGCACTCC 20 3668
BCLllA-3683 - TCACTTGGACCCCCACCGCA 20 3669
BCLllA-3684 - CCCAACCTGATCCCGGAGAA 20 3670
BCLllA-3685 - ACTACGGCTTCGGGCTGAGC 20 3671
BCLllA-3686 - TTTG CG CTTCTCCAC ACCG C 20 3672
BCLllA-3687 + AAGTCGCTGGTGCCGGGTTC 20 3673
BCLllA-3688 - CCCCAACCTGATCCCGGAGA 20 3674
BCLllA-3689 - AAGACTCGGTGGCCGGCGAG 20 3675
BCLllA-3690 - GCGCGGCCACCTGGCCGAGG 20 3676
BCLllA-3691 - AATCGCCTTTTGCCTCCTCG 20 3677
BCLllA-3692 - ACGACCCCAACCTGATCCCG 20 3678
BCLllA-3693 - GATCCCGGAGAACGGGGACG 20 3679
BCLllA-3694 + GGGGCAGGTCGAACTCCTTC 20 3680 BCLllA-3695 - TGGCTATGGAGCCTCCCGCC 20 3681
BCLllA-3696 + CCCCCAGGCGCTCTATGCGG 20 3682
BCLllA-3697 - GCGGTTGAATCCAATGGCTA 20 3683
BCLllA-3698 - CTACGGCTTCGGGCTGAGCC 20 3684
BCLllA-3699 - ACAGCTCGCGGGGCGCGGTC 20 3685
BCLllA-3700 - CCCCCCTGTTTAGTCCACCA 20 3686
BCLllA-3701 + CGCATGACTTGGACTTGACC 20 3687
BCLllA-3702 - CACGGAAGTCCCCTGACCCC 20 3688
BCLllA-3703 - CCTCCCGCCATGGATTTCTC 20 3689
BCLllA-3704 + TCTCGGTGGTGGACTAAACA 20 3690
BCLllA-3705 + TGAACTTGGCCACCACGGAC 20 3691
BCLllA-3706 - CTTCTCTAAG CG C ATC AAG C 20 3692
BCLllA-3707 + AG CG CAAACTCCCGTTCTCC 20 3693
BCLllA-3708 + TCGGTGGTGGACTAAACAGG 20 3694
BCLllA-3709 - CG CCACCACG AG AACAG CTC 20 3695
BCLllA-3710 - CTCCCGCCATGGATTTCTCT 20 3696
BCLllA-3711 + CGAGCTTGATGCGCTTAGAG 20 3697
BCLllA-3712 + ATGCCCTG CATG ACGTCG G G 20 3698
BCLllA-3713 - TCTCT AAG CG CATC AAG CTC 20 3699
BCLllA-3714 + GTCC AAGTG ATGTCTCG GTG 20 3700
BCLllA-3715 + CCCCCGAGGCCGACTCGCCC 20 3701
BCLllA-3716 + CCCCGAGGCCGACTCGCCCG 20 3702
BCLllA-3717 + GAAATTTGAACGTCTTGCCG 20 3703
BCLllA-3718 + GTCGCTG CGTCTG CCCTCTT 20 3704
BCLllA-3719 - TGGAGGCGGCGCGCCACCAC 20 3705
BCLllA-3720 + CTTCTCG AG CTTGATG CG CT 20 3706
BCLllA-3721 + GAAGCGCAAACTCCCGTTCT 20 3707
BCLllA-3722 - GAGAGAGGCTTCCGGCCTGG 20 3708
BCLllA-3723 - TCCCCGGGCGAGTCGGCCTC 20 3709
BCLllA-3724 + CAAGTCG CTGGTG CCGGGTT 20 3710
BCLllA-3725 - CATAGAGCGCCTGGGGGCGG 20 3711
BCLllA-3726 + CTCGGTGGTGGACTAAACAG 20 3712
BCLllA-3727 + CCCCCCGAGGCCGACTCGCC 20 3713
BCLllA-3728 - GGTTTCTCTTG C AACACG C A 20 3714
BCLllA-3729 + ACTTGGACTTGACCGGGGGC 20 3715
BCLllA-3730 - TGATCCCGGAGAACGGGGAC 20 3716
BCLllA-3731 + TGTCTGGAGTCTCCGAAGCT 20 3717
BCLllA-3732 - ATG G ATTTCTCTAG G AG ACT 20 3718
BCLllA-3733 - TG CG GTTG A ATC C A ATG G CT 20 3719
BCLllA-3734 - CTCCCCGGGCGAGTCGGCCT 20 3720
BCLllA-3735 - CCTGATCCCGGAGAACGGGG 20 3721
BCLllA-3736 + TGTCTCG GTGGTG G ACTAAA 20 3722 BCLllA-3737 + CGGTGGTGGACTAAACAGGG 20 3723
BCLllA-3738 + TGCCCACCAAGTCGCTGGTG 20 3724
BCLllA-3739 - CGTGGTGGCCAAGTTCAAGA 20 3725
BCLllA-3740 - CATCACCCGAGTGCCTTTGA 20 3726
BCLllA-3741 - G CG G C AAG ACGTTC AAATTT 20 3727
BCLllA-3742 + AAGGGCTCTCGAGCTTCCAT 20 3728
BCLllA-3743 + GTCTGGAGTCTCCGAAGCTA 20 3729
BCLllA-3744 - CCCCGGCCGCGATGCCCAAC 20 3730
BCLllA-3745 + CTGTCAAAGGCACTCGGGTG 20 3731
BCLllA-3746 + CTTGGACTTGACCGGGGGCT 20 3732
BCLllA-3747 + GACTTGGACTTGACCGGGGG 20 3733
BCLllA-3748 + TG CGTCTG CCCTCTTTTG AG 20 3734
BCLllA-3749 + GGAGGCAAAAGGCGATTGTC 20 3735
BCLllA-3750 - GCAACACGCACAGAACACTC 20 3736
BCLllA-3751 + GCAGTAACCTTTGCATAGGG 20 3737
BCLllA-3752 - TGGTGCACCGGCGCAGCCAC 20 3738
BCLllA-3753 - TGGTGGCCAAGTTCAAGAGC 20 3739
BCLllA-3754 - GCATAAGCGCGGCCACCTGG 20 3740
BCLllA-3755 + TTGCATAGGGCTGGGCCGGC 20 3741
BCLllA-3756 - CCAACCTGATCCCGGAGAAC 20 3742
BCLllA-3757 - AG ATGTGTG G CAGTTTTCG G 20 3743
BCLllA-3758 - CAGTTTTCGGATGGAAGCTC 20 3744
BCLllA-3759 - GCTCCCCGGGCGAGTCGGCC 20 3745
BCLllA-3760 - GGGTGGACTACGGCTTCGGG 20 3746
BCLllA-3761 - TATCCCTTCAG G ACTAG GTG 20 3747
BCLllA-3762 - ATCTCGGGGCGCAGCGGCAC 20 3748
BCLllA-3763 + CGCTCTTGAACTTGGCCACC 20 3749
BCLllA-3764 - GCACCGGCGCAGCCACACGG 20 3750
BCLllA-3765 + GCTTCTCGCCCAGGACCTGG 20 3751
BCLllA-3766 - TCCCGGAGAACGGGGACGAG 20 3752
BCLllA-3767 + CAGCACCCTGTCAAAGGCAC 20 3753
BCLllA-3768 + CATTCTGCACCTAGTCCTGA 20 3754
BCLllA-3769 - CTTTAACCTGCTAAGAATAC 20 3755
BCLllA-3770 - GTCTCTCCACCGCCAGCTCC 20 3756
BCLllA-3771 - TCTCTCCACCGCCAGCTCCC 20 3757
BCLllA-3772 + TGCTTCTCGCCCAGGACCTG 20 3758
BCLllA-3773 + GCGCCGCCTCCAGGCTCAGC 20 3759
BCLllA-3774 + AGATCCCTCCGTCCAGCTCC 20 3760
BCLllA-3775 - CGAGAGGGTGGACTACGGCT 20 3761
BCLllA-3776 + CGTCCAGCTCCCCGGGCGGT 20 3762
BCLllA-3777 + CCAGCTCTCTAAGTCTCCTA 20 3763
BCLllA-3778 + TCGCATGACTTGGACTTGAC 20 3764 BCLllA-3779 + GCACCATGCCCTGCATGACG 20 3765
BCLllA-3780 + AAGGCGATTGTCTGGAGTCT 20 3766
BCLllA-3781 + GCCTGGAGGCCGCGTAGCCG 20 3767
BCLllA-3782 - GCGGCCACCTGGCCGAGGCC 20 3768
BCLllA-3783 - AGAATACCAGGATCAGTATC 20 3769
BCLllA-3784 - GATGTGTGGCAGTTTTCGGA 20 3770
BCLllA-3785 - TCTCCACACCGCCCGGGGAG 20 3771
BCLllA-3786 - CCTGGAGGCGGCGCGCCACC 20 3772
BCLllA-3787 + CTGGTATTCTTAGCAGGTTA 20 3773
BCLllA-3788 + TAGAGAAGGGGCTCAGCGAG 20 3774
BCLllA-3789 + G AGTGTTCTGTG CGTGTTG C 20 3775
BCLllA-3790 - AATAACCCCTTTAACCTGCT 20 3776
BCLllA-3791 + A AAG CG CCCTTCTG CC AG G C 20 3777
BCLllA-3792 + GTCCAGCTCCCCGGGCGGTG 20 3778
BCLllA-3793 + AAGGGCGGCTTGCTACCTGG 20 3779
BCLllA-3794 + G A AAG CG CCCTTCTG CC AG G 20 3780
BCLllA-3795 + AGGGCGGCTTGCTACCTGGC 20 3781
BCLllA-3796 - CGCGGGGCGCGGTCGTGGGC 20 3782
BCLllA-3797 - GCGAGGCCTTCCACCAGGTC 20 3783
BCLllA-3798 + ACTTCCCGTGCCGCTGCGCC 20 3784
BCLllA-3799 - GCACAGAACACTCATGGATT 20 3785
BCLllA-3800 + CCAGCTCCCCGGGCGGTGTG 20 3786
BCLllA-3801 - ACCGCCCGGGGAGCTGGACG 20 3787
BCLllA-3802 + TG GTTG CAGTAACCTTTG CA 20 3788
BCLllA-3803 - AGGAGACTTAGAGAGCTGGC 20 3789
BCLllA-3804 - ACCGGCGCAGCCACACGGGC 20 3790
BCLllA-3805 + ACATTCTGCACCTAGTCCTG 20 3791
BCLllA-3806 + GTGTTCTGTG CGTGTTG CAA 20 3792
BCLllA-3807 - TGGCCCTGGCCACCCATCAC 20 3793
BCLllA-3808 + TGCATAGGGCTGGGCCGGCC 20 3794
BCLllA-3809 - AATACCAGGATCAGTATCGA 20 3795
BCLllA-3810 + TCCTGAAGGGATACCAACCC 20 3796
BCLllA-3811 + CTCCTAGAGAAATCCATGGC 20 3797
BCLllA-3812 + TGGCGGTGGAGAGACCGTCG 20 3798
BCLllA-3813 - GGA I 1 I C I C I AGGAGAC I I A 20 3799
BCLllA-3814 + CTCGCATGACTTGGACTTGA 20 3800
BCLllA-3815 - GATCTCGGGGCGCAGCGGCA 20 3801
BCLllA-3816 + GGTGGTGGACTAAACAGGGG 20 3802
BCLllA-3817 + AGGCCTCG CTGAAGTG CTG C 20 3803
BCLllA-3818 + CCACCAGGTTGCTCTGAAAT 20 3804
BCLllA-3819 - ACCGCATAGAGCGCCTGGGG 20 3805
BCLllA-3820 - CCAGCAAGCTGAAGCGCCAC 20 3806 BCLllA-3821 + GGCCTCG CTGAAGTG CTG CA 20 3807
BCLllA-3822 - CGTGCACCCAGGCCAGCAAG 20 3808
BCLllA-3823 + GGCGGGAGGCTCCATAGCCA 20 3809
BCLllA-3824 + AGGAGGCAAAAGGCGATTGT 20 3810
BCLllA-3825 - A A AG ATC CCTTC CTTAG CTT 20 3811
BCLllA-3826 + GGAGTCTCCGAAGCTAAGGA 20 3812
BCLllA-3827 + G CG CTTAG AGAAGGGGCTCA 20 3813
BCLllA-3828 + CAGCTTTTTGGACAGGCCCC 20 3814
BCLllA-3829 + GCACTCGGGTGATGGGTGGC 20 3815
BCLllA-3830 + CACGCCCACGACCGCGCCCC 20 3816
BCLllA-3831 + AAGTTGTACATGTGTAGCTG 20 3817
BCLllA-3832 - AGTCCGTGGTGGCCAAGTTC 20 3818
BCLllA-3833 - CCCGGAGAACGGGGACGAGG 20 3819
BCLllA-3834 - CGGGCAGGCCCAG CTC A A A A 20 3820
BCLllA-3835 + TGGTATTCTTAGCAGGTTAA 20 3821
BCLllA-3836 + TTGTCTGCAATATGAATCCC 20 3822
BCLllA-3837 + GTCTCCTAGAGAAATCCATG 20 3823
BCLllA-3838 + TGGACTTGACCGGGGGCTGG 20 3824
BCLllA-3839 + TGGAGTCTCCGAAGCTAAGG 20 3825
BCLllA-3840 + TGAGCTGGGCCTGCCCGGGC 20 3826
BCLllA-3841 - CAAAGATCCCTTCCTTAGCT 20 3827
BCLllA-3842 + TGCCACACATCTTGAGCTCT 20 3828
BCLllA-3843 - CCGCCCGGGGAGCTGGACGG 20 3829
BCLllA-3844 + AGAGAAGGGGCTCAGCGAGC 20 3830
BCLllA-3845 - GGAGACTTAGAGAGCTGGCA 20 3831
BCLllA-3846 + GAATCCCATGGAGAGGTGGC 20 3832
BCLllA-3847 + CG CTGAAGTG CTG C ATG G AG 20 3833
BCLllA-3848 + AGGACATTCTGCACCTAGTC 20 3834
BCLllA-3849 + AATCCCATGGAGAGGTGGCT 20 3835
BCLllA-3850 + TGAGCTCTCTGGGTACTACG 20 3836
BCLllA-3851 - GGGCCACAGGGACACTTGCG 20 3837
BCLllA-3852 - TAGGAGACTTAGAGAGCTGG 20 3838
BCLllA-3853 - CCTTTGACAGGGTGCTGCGG 20 3839
BCLllA-3854 - TGGCCGAGGCCGAGGGCCAC 20 3840
BCLllA-3855 + GGAAGGGATCTTTGAGCTGC 20 3841
BCLllA-3856 + TCTAAGTAGATTCTTAATCC 20 3842
BCLllA-3857 - GGGGCGCAGCGGCACGGGAA 20 3843
BCLllA-3858 - CTGGCCGAGGCCGAGGGCCA 20 3844
BCLllA-3859 - CTCAAG ATGTGTGG CAGTTT 20 3845
BCLllA-3860 + CGAAGCTAAGGAAGGGATCT 20 3846
BCLllA-3861 + TGCCAGCTCTCTAAGTCTCC 20 3847
BCLllA-3862 + TCTCCTAGAGAAATCCATGG 20 3848 BCLllA-3863 - GCCACCACGAGAACAGCTCG 20 3849
BCLllA-3864 + TCTG C A AT ATG A ATC CC ATG 20 3850
BCLllA-3865 - CAG CTCC ATG CAG CACTTC A 20 3851
BCLllA-3866 - G CCTGTCC AAAAAG CTG CTG 20 3852
BCLllA-3867 - TAAGAATACCAGGATCAGTA 20 3853
BCLllA-3868 - GGATCTCGGGGCGCAGCGGC 20 3854
BCLllA-3869 - GGCA I 1 1 I CGGA I GAAGC 20 3855
BCLllA-3870 - CGGTCGTGGGCGTGGGCGAC 20 3856
BCLllA-3871 + GCATCGCGGCCGGGGGCAGG 20 3857
BCLllA-3872 - AATCTACTTAGAAAGCGAAC 20 3858
BCLllA-3873 + A AG G G GTTATTGTCTG CAAT 20 3859
BCLllA-3874 + GGACTTGACCGGGGGCTGGG 20 3860
BCLllA-3875 - TCATGGATTAAGAATCTACT 20 3861
BCLllA-3876 - AGAGGCTTCCGGCCTGGCAG 20 3862
BCLllA-3877 - GGCCTTCCACCAGGTCCTGG 20 3863
BCLllA-3878 + TG G CG CTTC AG CTTG CTG G C 20 3864
BCLllA-3879 - C CG CAT AG AG CGCCTGGGGG 20 3865
BCLllA-3880 + GGACCTGGTGGAAGGCCTCG 20 3866
BCLllA-3881 - CCTTCCACCAGGTCCTGGGC 20 3867
BCLllA-3882 + TGTCTGCAATATGAATCCCA 20 3868
BCLllA-3883 - GGAGCTGGACGGAGGGATCT 20 3869
BCLllA-3884 + GACTTGACCGGGGGCTGGGA 20 3870
BCLllA-3885 - TCCTTCCCAGCCACCTCTCC 20 3871
BCLllA-3886 + CTCTTTTGAGCTGGGCCTGC 20 3872
BCLllA-3887 - TGCGCTTCTCCACACCGCCC 20 3873
BCLllA-3888 + G CA AG AG AAACC ATG CACTG 20 3874
BCLllA-3889 - GGGAGCTGGACGGAGGGATC 20 3875
BCLllA-3890 + GTTCCGGGGAGCTGGCGGTG 20 3876
BCLllA-3891 + TGAATCCCATGGAGAGGTGG 20 3877
BCLllA-3892 + CGGGTTCCGGGGAGCTGGCG 20 3878
BCLllA-3893 + GTGGACTAAACAGGGGGGGA 20 3879
BCLllA-3894 + GGCTGCCCAGCAGCAG CTTT 20 3880
BCLllA-3895 + GAAGGGATCTTTGAGCTGCC 20 3881
BCLllA-3896 - CCTTCCCAGCCACCTCTCCA 20 3882
BCLllA-3897 - GCGCAGCGGCACGGGAAGTG 20 3883
BCLllA-3898 + GGGTTCCGGGGAGCTGGCGG 20 3884
BCLllA-3899 + TCCTCCTCGTCCCCGTTCTC 20 3885
BCLllA-3900 - GCAGCGGCACGGGAAGTGGA 20 3886
BCLllA-3901 - TGCTGGGCAGCCCCAGCTCG 20 3887
BCLllA-3902 - GGGCGCAGCGGCACGGGAAG 20 3888
BCLllA-3903 - ACACCGCCCGGGGAGCTGGA 20 3889
BCLllA-3904 + CCCATGGAGAGGTGGCTGGG 20 3890 BCLllA-3905 + TTCCTCCTCGTCCCCGTTCT 20 3891
BCLllA-3906 - ATCT ACTTAG A A AG CG A AC A 20 3892
BCLllA-3907 - CCCGGGCAGGCCCAGCTCAA 20 3893
BCLllA-3908 - CACACCGCCCGGGGAGCTGG 20 3894
BCLllA-3909 + ACTAAACAGGGGGGGAGTGG 20 3895
BCLllA-3910 + GACCGGGGGCTGGGAGGGAG 20 3896
BCLllA-3911 + GGGCCGGCCTGGGGACAGCG 20 3897
BCLllA-3912 + GCATAGGGCTGGGCCGGCCT 20 3898
BCLllA-3913 - ATTAAGAATCTACTTAGAAA 20 3899
BCLllA-3914 + CTAAACAGGGGGGGAGTGGG 20 3900
BCLllA-3915 + TTGACCGGGGGCTGGGAGGG 20 3901
BCLllA-3916 - CGCGGTCGTGGGCGTGGGCG 20 3902
BCLllA-3917 + GAGGGAGGGGGGGCGTCGCC 20 3903
BCLllA-3918 - GGAGAACGGGGACGAGGAGG 20 3904
BCLllA-3919 + CTTGACCGGGGGCTGGGAGG 20 3905
BCLllA-3920 + GGAGGGAGGGGGGGCGTCGC 20 3906
BCLllA-3921 + ACCGGGGGCTGGGAGGGAGG 20 3907
BCLllA-3922 - CGCAGCGGCACGGGAAGTGG 20 3908
BCLllA-3923 + GCGGATTGCAGAGGAGGGAG 20 3909
BCLllA-3924 + GGAGGGGGGGCGTCGCCAGG 20 3910
BCLllA-3925 + GGCGGATTGCAGAGGAGGGA 20 3911
BCLllA-3926 + GAGGGGCGGATTGCAGAGGA 20 3912
BCLllA-3927 + GGGGCGGATTGCAGAGGAGG 20 3913
BCLllA-3928 - GAGGAGCTGACGGAGAGCGA 20 3914
BCLllA-3929 + TCCGAAAACTGCCACACATC 20 3915
BCLllA-3930 + CGGATTGCAGAGGAGGGAGG 20 3916
BCLllA-3931 + GGAGGGGCGGATTGCAGAGG 20 3917
BCLllA-3932 + GGGCGGATTGCAGAGGAGGG 20 3918
BCLllA-3933 + AGGAGGGGCGGATTGCAGAG 20 3919
BCLllA-3934 - AGAACGGGGACGAGGAGGAA 20 3920
BCLllA-3935 + GAGGGAGGAGGGGCGGATTG 20 3921
BCLllA-3936 - TTG CG CTTCTCCAC ACCG CC 20 3922
BCLllA-3937 - AGCTGACGGAGAGCGAGAGG 20 3923
BCLllA-3938 - AGGAGGAGCTGACGGAGAGC 20 3924
BCLllA-3939 + GGGGCTGGGAGGGAGGAGGG 20 3925
BCLllA-3940 + GGGAGGAGGGGCGGATTGCA 20 3926
BCLllA-3941 + CCGTGTTGGGCATCGCGGCC 20 3927
BCLllA-3942 - GAACGGGGACGAGGAGGAAG 20 3928
BCLllA-3943 + GGAGGAGGGGCGGATTGCAG 20 3929
BCLllA-3944 - GGAGGAGGAGCTGACGGAGA 20 3930
BCLllA-3945 - ACGGGGACGAGGAGGAAGAG 20 3931
BCLllA-3946 - AGGAGGAGGAGGAGCTGACG 20 3932 BCLllA-3947 - ACGACGAGGAAGAGGAAGAA 20 3933
BCLllA-3948 - ACGAGGAAGAGGAAGAAGAG 20 3934
BCLllA-3949 - AGGAGGAAGAGGAGGACGAC 20 3935
BCLllA-3950 - AAGAGGAGGACGACGAGGAA 20 3936
BCLllA-3951 - AGAGGAGGAGGAGGAGCTGA 20 3937
BCLllA-3952 - GGAGGAAGAGGAGGACGACG 20 3938
BCLllA-3953 - CGAGGAGGAAGAGGAGGACG 20 3939
BCLllA-3954 - CGAGGAAGAGGAAGAAGAGG 20 3940
BCLllA-3955 - AAGAGGAGGAGGAGGAGCTG 20 3941
BCLllA-3956 - CGACGAGGAAGAGGAAGAAG 20 3942
BCLllA-3957 - GGAGGACGACGAGGAAGAGG 20 3943
BCLllA-3958 - AGAGGAGGACGACGAGGAAG 20 3944
BCLllA-3959 - GGACGACGAGGAAGAGGAAG 20 3945
BCLllA-3960 - GGAAGAGGAGGACGACGAGG 20 3946
BCLllA-3961 - AGGAAGAAGAGGAGGAAGAG 20 3947
BCLllA-3962 - AAGAGGAAGAAGAGGAGGAA 20 3948
BCLllA-3963 - GGAAGAGGAAGAAGAGGAGG 20 3949
BCLllA-3964 - AAGAAGAGGAGGAAGAGGAG 20 3950
BCLllA-3965 - AAGAGGAGGAAGAGGAGGAG 20 3951
BCLllA-3966 - AGAGGAAGAAGAGGAGGAAG 20 3952
BCLllA-3967 - GGAAGAAGAGGAGGAAGAGG 20 3953
BCLllA-3968 - AGAAGAGGAGGAAGAGGAGG 20 3954
BCLllA-3969 - AGAGGAGGAAGAGGAGGAGG 20 3955
BCLllA-3970 + TCGGACTTGACCGTCAT 17 3956
BCLllA-3971 + GTCGGACTTGACCGTCA 17 3957
BCLllA-3972 + CGTCGGACTTGACCGTC 17 3958
BCLllA-3973 + CGGACTTGACCGTCATG 17 3959
BCLllA-3974 - ATATTAGTGGTCCGGGC 17 3960
BCLllA-3975 + GTCCGACTCGCCGGCCA 17 3961
BCLllA-3976 + CGAGGAGTGCTCCGACG 17 3962
BCLllA-3977 - CCATTCGGCGTAGTACC 17 3963
BCLllA-3978 + CCGAGGAGTGCTCCGAC 17 3964
BCLllA-3979 - GCGGGTTGGTATCCCTT 17 3965
BCLllA-3980 + AGTACACGTTCTCCGTG 17 3966
BCLllA-3981 - ATTCGGCGTAGTACCCA 17 3967
BCLllA-3982 + CGTGTTG GG CATCG CG G 17 3968
BCLllA-3983 + CG CTTATG CTTCTCG CC 17 3969
BCLllA-3984 - CGAAGACTCGGTGGCCG 17 3970
BCLllA-3985 - CCC ACCG CATAG AG CG C 17 3971
BCLllA-3986 + ACGCCGAATGGGGGTGT 17 3972
BCLllA-3987 + GGCCCGGACCACTAATA 17 3973
BCLllA-3988 + GTAGCCGGCGAGCCACT 17 3974 BCLllA-3989 - GAGCACTCCTCGGAGAA 17 3975
BCLllA-3990 - AGCACTCCTCGGAGAAC 17 3976
BCLllA-3991 + CTGGGTACTACGCCGAA 17 3977
BCLllA-3992 + CGCAGAACTCGCATGAC 17 3978
BCLllA-3993 + ACCAACCCGCGGGGTCA 17 3979
BCLllA-3994 + TACCAACCCGCGGGGTC 17 3980
BCLllA-3995 + ATACCAACCCGCGGGGT 17 3981
BCLllA-3996 - CCACCGCATAGAGCGCC 17 3982
BCLllA-3997 + TGGGGTCGTTCTCGCTC 17 3983
BCLllA-3998 - CGCCCCATATTAGTGGT 17 3984
BCLllA-3999 - GCGCATCAAGCTCGAGA 17 3985
BCLllA-4000 + CTCCGAGGAGTGCTCCG 17 3986
BCLllA-4001 + CG AG CTTG ATG CG CTTA 17 3987
BCLllA-4002 - AG CG CATCAAG CTCG AG 17 3988
BCLllA-4003 - GGAGCACTCCTCGGAGA 17 3989
BCLllA-4004 - CCGCGGCTGCTCCCCGG 17 3990
BCLllA-4005 - C ACCG C ATAG AG CG CCT 17 3991
BCLllA-4006 + GAAGGGATACCAACCCG 17 3992
BCLllA-4007 - CTTCTCCACACCGCCCG 17 3993
BCLllA-4008 - CCCTGCCCGACGTCATG 17 3994
BCLllA-4009 - CCGGCACCAGCGACTTG 17 3995
BCLllA-4010 + TGGGTACTACGCCGAAT 17 3996
BCLllA-4011 + GTTCTCCGGGATCAGGT 17 3997
BCLllA-4012 - CGACCCCAACCTGATCC 17 3998
BCLllA-4013 + CCGAATGGGGGTGTGTG 17 3999
BCLllA-4014 + GCTGGTGCCGGGTTCCG 17 4000
BCLllA-4015 - CGGGCGAGTCGGCCTCG 17 4001
BCLllA-4016 + TGCACCACCAGGTTGCT 17 4002
BCLllA-4017 - CACCACCGAGACATCAC 17 4003
BCLllA-4018 - ATGGCCGCGGCTGCTCC 17 4004
BCLllA-4019 + TCTGGGTACTACGCCGA 17 4005
BCLllA-4020 + CAAACTCCCGTTCTCCG 17 4006
BCLllA-4021 + GGGCCCGGACCACTAAT 17 4007
BCLllA-4022 + CCCAGGCGCTCTATGCG 17 4008
BCLllA-4023 - GCCTTTTGCCTCCTCGT 17 4009
BCLllA-4024 - CGTCGGAGCACTCCTCG 17 4010
BCLllA-4025 + CTTGATGCGCTTAGAGA 17 4011
BCLllA-4026 + CGTTCTCCGGGATCAGG 17 4012
BCLllA-4027 - CCGCGATGCCCAACACG 17 4013
BCLllA-4028 + CCCCGAGGCCGACTCGC 17 4014
BCLllA-4029 - GGCCGCGATGCCCAACA 17 4015
BCLllA-4030 - CTCGTCGGAGCACTCCT 17 4016 BCLllA-4031 + TCGGTGGTGGACTAAAC 17 4017
BCLllA-4032 + CAG G CG CTCTATG CGGT 17 4018
BCLllA-4033 + CG C ACAG GTTG CACTTG 17 4019
BCLllA-4034 + CGCTGGTGCCGGGTTCC 17 4020
BCLllA-4035 - GGTCAAGTCCAAGTCAT 17 4021
BCLllA-4036 - ACGACCCCAACCTGATC 17 4022
BCLllA-4037 + GTGTTGGGCATCGCGGC 17 4023
BCLllA-4038 - CCTCGTCGGAGCACTCC 17 4024
BCLllA-4039 - CTTGGACCCCCACCGCA 17 4025
BCLllA-4040 - AACCTGATCCCGGAGAA 17 4026
BCLllA-4041 - ACGGCTTCGGGCTGAGC 17 4027
BCLllA-4042 - GCGCTTCTCCACACCGC 17 4028
BCLllA-4043 + TCGCTGGTGCCGGGTTC 17 4029
BCLllA-4044 - CAACCTGATCCCGGAGA 17 4030
BCLllA-4045 - ACTCGGTGGCCGGCGAG 17 4031
BCLllA-4046 - CGGCCACCTGGCCGAGG 17 4032
BCLllA-4047 - CGCCTTTTGCCTCCTCG 17 4033
BCLllA-4048 - ACCCCAACCTGATCCCG 17 4034
BCLllA-4049 - CCCGGAGAACGGGGACG 17 4035
BCLllA-4050 + G CAG GTCG A ACTCCTTC 17 4036
BCLllA-4051 - CTATG G AG CCTCCCG CC 17 4037
BCLllA-4052 + CC AGG CG CTCTATG CG G 17 4038
BCLllA-4053 - GTTG A ATC C A ATG G CT A 17 4039
BCLllA-4054 - CGGCTTCGGGCTGAGCC 17 4040
BCLllA-4055 - GCTCGCGGGGCGCGGTC 17 4041
BCLllA-4056 - CCCTGTTTAGTCCACCA 17 4042
BCLllA-4057 + ATGACTTGGACTTGACC 17 4043
BCLllA-4058 - GGAAGTCCCCTGACCCC 17 4044
BCLllA-4059 - CCCGCCATGGATTTCTC 17 4045
BCLllA-4060 + CGGTGGTGGACTAAACA 17 4046
BCLllA-4061 + ACTTGGCCACCACGGAC 17 4047
BCLllA-4062 - CTCTAAG CG C ATC AAG C 17 4048
BCLllA-4063 + GCAAACTCCCGTTCTCC 17 4049
BCLllA-4064 + GTGGTG G ACTAA ACAG G 17 4050
BCLllA-4065 - CACCACGAGAACAGCTC 17 4051
BCLllA-4066 - CCGCCATGGATTTCTCT 17 4052
BCLllA-4067 + G CTTG ATG CG CTTAG AG 17 4053
BCLllA-4068 + CCCTGCATGACGTCGGG 17 4054
BCLllA-4069 - CT AAG CG CATC AAG CTC 17 4055
BCLllA-4070 + CAAGTGATGTCTCGGTG 17 4056
BCLllA-4071 + CCGAGGCCGACTCGCCC 17 4057
BCLllA-4072 + CGAGGCCGACTCGCCCG 17 4058 BCLllA-4073 + ATTTGAACGTCTTGCCG 17 4059
BCLllA-4074 + GCTGCGTCTGCCCTCTT 17 4060
BCLllA-4075 - AGGCGGCGCGCCACCAC 17 4061
BCLllA-4076 + CTCG AG CTTG ATG CG CT 17 4062
BCLllA-4077 + G CG CAA ACTCCCGTTCT 17 4063
BCLllA-4078 - AGAGGCTTCCGGCCTGG 17 4064
BCLllA-4079 - CCGGGCGAGTCGGCCTC 17 4065
BCLllA-4080 + GTCGCTGGTGCCGGGTT 17 4066
BCLllA-4081 - AGAGCGCCTGGGGGCGG 17 4067
BCLllA-4082 + GGTGGTGGACTAAACAG 17 4068
BCLllA-4083 + CCCGAGGCCGACTCGCC 17 4069
BCLllA-4084 - TTCTCTTG CAAC ACG CA 17 4070
BCLllA-4085 + TGGACTTGACCGGGGGC 17 4071
BCLllA-4086 - TCCCGGAGAACGGGGAC 17 4072
BCLllA-4087 + CTGGAGTCTCCGAAGCT 17 4073
BCLllA-4088 - GA I 1 I C I C I AGGAGAC I 17 4074
BCLllA-4089 - G GTTG A ATC C A ATG G CT 17 4075
BCLllA-4090 - CCCGGGCGAGTCGGCCT 17 4076
BCLllA-4091 - GATCCCGGAGAACGGGG 17 4077
BCLllA-4092 + CTCGGTGGTGGACTAAA 17 4078
BCLllA-4093 + TGGTGGACTAAACAGGG 17 4079
BCLllA-4094 + CCACCAAGTCGCTGGTG 17 4080
BCLllA-4095 - GGTGGCCAAGTTCAAGA 17 4081
BCLllA-4096 - CACCCGAGTGCCTTTGA 17 4082
BCLllA-4097 - GCAAGACGTTCAAATTT 17 4083
BCLllA-4098 + GGCTCTCGAGCTTCCAT 17 4084
BCLllA-4099 + TGGAGTCTCCGAAGCTA 17 4085
BCLllA-4100 - CGGCCGCGATGCCCAAC 17 4086
BCLllA-4101 + TCAAAGGCACTCGGGTG 17 4087
BCLllA-4102 + GGACTTGACCGGGGGCT 17 4088
BCLllA-4103 + TTGGACTTGACCGGGGG 17 4089
BCLllA-4104 + GTCTGCCCTCTTTTGAG 17 4090
BCLllA-4105 + G G CAAAAG G CG ATTGTC 17 4091
BCLllA-4106 - ACACGCACAGAACACTC 17 4092
BCLllA-4107 + GTAACCTTTGCATAGGG 17 4093
BCLllA-4108 - TGCACCGGCGCAGCCAC 17 4094
BCLllA-4109 - TGGCCAAGTTCAAGAGC 17 4095
BCLllA-4110 - TAAGCGCGGCCACCTGG 17 4096
BCLllA-4111 + CATAGGGCTGGGCCGGC 17 4097
BCLllA-4112 - ACCTGATCCCGGAGAAC 17 4098
BCLllA-4113 - TGTGTGGCAGTTTTCGG 17 4099
BCLllA-4114 - TTTTCGGATGGAAGCTC 17 4100 BCLllA-4115 - CCCCGGGCGAGTCGGCC 17 4101
BCLllA-4116 - TGGACTACGGCTTCGGG 17 4102
BCLllA-4117 - CCCTTCAGGACTAGGTG 17 4103
BCLllA-4118 - TCGGGGCGCAGCGGCAC 17 4104
BCLllA-4119 + TCTTGAACTTGGCCACC 17 4105
BCLllA-4120 - CCGGCGCAGCCACACGG 17 4106
BCLllA-4121 + TCTCGCCCAGGACCTGG 17 4107
BCLllA-4122 - CGGAGAACGGGGACGAG 17 4108
BCLllA-4123 + CACCCTGTCAAAGGCAC 17 4109
BCLllA-4124 + TCTGCACCTAGTCCTGA 17 4110
BCLllA-4125 - TAACCTG CTAAG AATAC 17 4111
BCLllA-4126 - TCTCCACCGCCAGCTCC 17 4112
BCLllA-4127 - CTCCACCGCCAGCTCCC 17 4113
BCLllA-4128 + TTCTCGCCCAGGACCTG 17 4114
BCLllA-4129 + CCGCCTCCAGGCTCAGC 17 4115
BCLllA-4130 + TCCCTCCGTCCAGCTCC 17 4116
BCLllA-4131 - GAGGGTGGACTACGGCT 17 4117
BCLllA-4132 + CCAGCTCCCCGGGCGGT 17 4118
BCLllA-4133 + GCTCTCTAAGTCTCCTA 17 4119
BCLllA-4134 + CATGACTTGGACTTGAC 17 4120
BCLllA-4135 + CCATGCCCTGCATGACG 17 4121
BCLllA-4136 + GCGATTGTCTGGAGTCT 17 4122
BCLllA-4137 + TGGAGGCCGCGTAGCCG 17 4123
BCLllA-4138 - GCCACCTGGCCGAGGCC 17 4124
BCLllA-4139 - ATACCAGGATCAGTATC 17 4125
BCLllA-4140 - GTGTGGCAGTTTTCGGA 17 4126
BCLllA-4141 - CCACACCGCCCGGGGAG 17 4127
BCLllA-4142 - GGAGGCGGCGCGCCACC 17 4128
BCLllA-4143 + GTATTCTTAG CAG GTTA 17 4129
BCLllA-4144 + AGAAGGGGCTCAGCGAG 17 4130
BCLllA-4145 + TGTTCTGTG CGTGTTG C 17 4131
BCLllA-4146 - AACCCCTTTAACCTGCT 17 4132
BCLllA-4147 + G CG CC CTTCTG C C AG G C 17 4133
BCLllA-4148 + CAGCTCCCCGGGCGGTG 17 4134
BCLllA-4149 + GGCGGCTTGCTACCTGG 17 4135
BCLllA-4150 + AGCGCCCTTCTGCCAGG 17 4136
BCLllA-4151 + GCGGCTTGCTACCTGGC 17 4137
BCLllA-4152 - GGGGCGCGGTCGTGGGC 17 4138
BCLllA-4153 - AGGCCTTCCACCAGGTC 17 4139
BCLllA-4154 + TCCCGTGCCGCTGCGCC 17 4140
BCLllA-4155 - CAGAACACTCATGGATT 17 4141
BCLllA-4156 + GCTCCCCGGGCGGTGTG 17 4142 BCLllA-4157 - GCCCGGGGAGCTGGACG 17 4143
BCLllA-4158 + TTGCAGTAACCTTTGCA 17 4144
BCLllA-4159 - AGACTTAGAGAGCTGGC 17 4145
BCLllA-4160 - GGCGCAGCCACACGGGC 17 4146
BCLllA-4161 + TTCTGCACCTAGTCCTG 17 4147
BCLllA-4162 + TTCTGTG CGTGTTG CAA 17 4148
BCLllA-4163 - CCCTGGCCACCCATCAC 17 4149
BCLllA-4164 + ATAGGGCTGGGCCGGCC 17 4150
BCLllA-4165 - ACCAGGATCAGTATCGA 17 4151
BCLllA-4166 + TGAAGGGATACCAACCC 17 4152
BCLllA-4167 + CTAG AG A A ATC C ATG G C 17 4153
BCLllA-4168 + CGGTGGAGAGACCGTCG 17 4154
BCLllA-4169 - TTTCTCTAGGAGACTTA 17 4155
BCLllA-4170 + GCATGACTTGGACTTGA 17 4156
BCLllA-4171 - CTCGGGGCGCAGCGGCA 17 4157
BCLllA-4172 + GGTGGACTAAACAGGGG 17 4158
BCLllA-4173 + CCTCG CTG AAGTG CTG C 17 4159
BCLllA-4174 + CCAGGTTGCTCTGAAAT 17 4160
BCLllA-4175 - G C ATAG AGCGCCTGGGG 17 4161
BCLllA-4176 - G CAAG CTG AAG CG CC AC 17 4162
BCLllA-4177 + CTCG CTG AAGTG CTG C A 17 4163
BCLllA-4178 - GCACCCAGGCCAGCAAG 17 4164
BCLllA-4179 + GGGAGGCTCCATAGCCA 17 4165
BCLllA-4180 + AGGCAAAAGGCGATTGT 17 4166
BCLllA-4181 - GATCCCTTCCTTAGCTT 17 4167
BCLllA-4182 + GTCTCCGAAGCTAAGGA 17 4168
BCLllA-4183 + CTTAGAGAAGGGGCTCA 17 4169
BCLllA-4184 + CTTTTTGGACAGGCCCC 17 4170
BCLllA-4185 + CTCGGGTGATGGGTGGC 17 4171
BCLllA-4186 + GCCCACGACCGCGCCCC 17 4172
BCLllA-4187 + TTGTACATGTGTAG CTG 17 4173
BCLllA-4188 - CCGTGGTGGCCAAGTTC 17 4174
BCLllA-4189 - GGAGAACGGGGACGAGG 17 4175
BCLllA-4190 - GCAGG CCCAG CTCAAAA 17 4176
BCLllA-4191 + TATTCTTAG CAG GTTAA 17 4177
BCLllA-4192 + TCTGCAATATGAATCCC 17 4178
BCLllA-4193 + TCCTAGAGAAATCCATG 17 4179
BCLllA-4194 + ACTTGACCGGGGGCTGG 17 4180
BCLllA-4195 + AGTCTCCGAAGCTAAGG 17 4181
BCLllA-4196 + GCTGGGCCTGCCCGGGC 17 4182
BCLllA-4197 - AG ATCC CTTC CTTAG CT 17 4183
BCLllA-4198 + CACACATCTTGAGCTCT 17 4184 BCLllA-4199 - CCCGGGGAGCTGGACGG 17 4185
BCLllA-4200 + GAAGGGGCTCAGCGAGC 17 4186
BCLllA-4201 - G ACTTAG AG AG CTG G C A 17 4187
BCLllA-4202 + TCCCATGGAGAGGTGGC 17 4188
BCLllA-4203 + TGAAGTG CTG C ATG G AG 17 4189
BCLllA-4204 + ACATTCTGCACCTAGTC 17 4190
BCLllA-4205 + CCCATGGAGAGGTGGCT 17 4191
BCLllA-4206 + GCTCTCTGGGTACTACG 17 4192
BCLllA-4207 - CCACAGGGACACTTGCG 17 4193
BCLllA-4208 - GAGACTTAGAGAGCTGG 17 4194
BCLllA-4209 - TTGACAGGGTGCTGCGG 17 4195
BCLllA-4210 - CCGAGGCCGAGGGCCAC 17 4196
BCLllA-4211 + AGGGATCTTTGAGCTGC 17 4197
BCLllA-4212 + AAGTAGATTCTTAATCC 17 4198
BCLllA-4213 - GCGCAGCGGCACGGGAA 17 4199
BCLllA-4214 - GCCGAGGCCGAGGGCCA 17 4200
BCLllA-4215 - AAGATGTGTGGCAGTTT 17 4201
BCLllA-4216 + AGCTAAGGAAGGGATCT 17 4202
BCLllA-4217 + CAG CTCTCTAAGTCTCC 17 4203
BCLllA-4218 + CCTAGAGAAATCCATGG 17 4204
BCLllA-4219 - ACCACGAGAACAGCTCG 17 4205
BCLllA-4220 + G C A AT ATG A ATC CC ATG 17 4206
BCLllA-4221 - CTC C ATG CAG C ACTTC A 17 4207
BCLllA-4222 - TGTCC AAAAAG CTG CTG 17 4208
BCLllA-4223 - GAATACCAGGATCAGTA 17 4209
BCLllA-4224 - TCTCGGGGCGCAGCGGC 17 4210
BCLllA-4225 - AG 1 1 1 I GGA I GAAGC 17 4211
BCLllA-4226 - TCGTGGGCGTGGGCGAC 17 4212
BCLllA-4227 + TCGCGGCCGGGGGCAGG 17 4213
BCLllA-4228 - CTACTTAGAAAGCGAAC 17 4214
BCLllA-4229 + GGGTTATTGTCTGCAAT 17 4215
BCLllA-4230 + CTTGACCGGGGGCTGGG 17 4216
BCLllA-4231 - TGGATTAAGAATCTACT 17 4217
BCLllA-4232 - GGCTTCCGGCCTGGCAG 17 4218
BCLllA-4233 - CTTCCACCAGGTCCTGG 17 4219
BCLllA-4234 + CG CTTC AG CTTG CTG G C 17 4220
BCLllA-4235 - CATAGAGCGCCTGGGGG 17 4221
BCLllA-4236 + CCTGGTGGAAGGCCTCG 17 4222
BCLllA-4237 - TCCACCAGGTCCTGGGC 17 4223
BCLllA-4238 + CTG C A AT ATG A ATC CCA 17 4224
BCLllA-4239 - GCTGGACGGAGGGATCT 17 4225
BCLllA-4240 + TTGACCGGGGGCTGGGA 17 4226 BCLllA-4241 - TTCCCAGCCACCTCTCC 17 4227
BCLllA-4242 + TTTTG AGCTGGGCCTGC 17 4228
BCLllA-4243 - GCTTCTCCACACCGCCC 17 4229
BCLllA-4244 + AGAGAAACCATGCACTG 17 4230
BCLllA-4245 - AGCTGGACGGAGGGATC 17 4231
BCLllA-4246 + CCGGGGAGCTGGCGGTG 17 4232
BCLllA-4247 + ATCCCATGGAGAGGTGG 17 4233
BCLllA-4248 + GTTCCGGGGAGCTGGCG 17 4234
BCLllA-4249 + GACTAAACAGGGGGGGA 17 4235
BCLllA-4250 + TG CCCAG CAG CAG CTTT 17 4236
BCLllA-4251 + GGGATCTTTGAGCTGCC 17 4237
BCLllA-4252 - TCCCAGCCACCTCTCCA 17 4238
BCLllA-4253 - CAGCGGCACGGGAAGTG 17 4239
BCLllA-4254 + TTCCGGGGAGCTGGCGG 17 4240
BCLllA-4255 + TCCTCGTCCCCGTTCTC 17 4241
BCLllA-4256 - GCGGCACGGGAAGTGGA 17 4242
BCLllA-4257 - TGGGCAGCCCCAGCTCG 17 4243
BCLllA-4258 - CGCAGCGGCACGGGAAG 17 4244
BCLllA-4259 - CCGCCCGGGGAGCTGGA 17 4245
BCLllA-4260 + ATGGAGAGGTGGCTGGG 17 4246
BCLllA-4261 + CTCCTCGTCCCCGTTCT 17 4247
BCLllA-4262 - TACTTAGAAAGCGAACA 17 4248
BCLllA-4263 - GGGCAGGCCCAGCTCAA 17 4249
BCLllA-4264 - ACCGCCCGGGGAGCTGG 17 4250
BCLllA-4265 + AAACAGGGGGGGAGTGG 17 4251
BCLllA-4266 + CGGGGGCTGGGAGGGAG 17 4252
BCLllA-4267 + CCGGCCTGGGGACAGCG 17 4253
BCLllA-4268 + TAGGGCTGGGCCGGCCT 17 4254
BCLllA-4269 - AAGAATCTACTTAGAAA 17 4255
BCLllA-4270 + AACAGGGGGGGAGTGGG 17 4256
BCLllA-4271 + ACCGGGGGCTGGGAGGG 17 4257
BCLllA-4272 - GGTCGTGGGCGTGGGCG 17 4258
BCLllA-4273 + GGAGGGGGGGCGTCGCC 17 4259
BCLllA-4274 - GAACGGGGACGAGGAGG 17 4260
BCLllA-4275 + GACCGGGGGCTGGGAGG 17 4261
BCLllA-4276 + GGGAGGGGGGGCGTCGC 17 4262
BCLllA-4277 + GGGGGCTGGGAGGGAGG 17 4263
BCLllA-4278 - AGCGGCACGGGAAGTGG 17 4264
BCLllA-4279 + GATTGCAGAGGAGGGAG 17 4265
BCLllA-4280 + GGGGGGGCGTCGCCAGG 17 4266
BCLllA-4281 + GGATTGCAGAGGAGGGA 17 4267
BCLllA-4282 + GGGCGGATTGCAGAGGA 17 4268 BCLllA-4283 + G CGGATTG CAG AG G AG G 17 4269
BCLllA-4284 - GAGCTGACGGAGAGCGA 17 4270
BCLllA-4285 + GAAAACTGCCACACATC 17 4271
BCLllA-4286 + ATTGCAGAGGAGGGAGG 17 4272
BCLllA-4287 + GGGGCGGATTGCAGAGG 17 4273
BCLllA-4288 + CGGATTGCAGAGGAGGG 17 4274
BCLllA-4289 + AGGGGCGGATTGCAGAG 17 4275
BCLllA-4290 - ACGGGGACGAGGAGGAA 17 4276
BCLllA-4291 + GGAGGAGGGGCGGATTG 17 4277
BCLllA-4292 - CGCTTCTCCACACCGCC 17 4278
BCLllA-4293 - TGACGGAGAGCGAGAGG 17 4279
BCLllA-4294 - AGGAGCTGACGGAGAGC 17 4280
BCLllA-4295 + GCTGGGAGGGAGGAGGG 17 4281
BCLllA-4296 + AGGAGGGGCGGATTGCA 17 4282
BCLllA-4297 + TGTTGGGCATCGCGGCC 17 4283
BCLllA-4298 - CGGGGACGAGGAGGAAG 17 4284
BCLllA-4299 + GGAGGGGCGGATTGCAG 17 4285
BCLllA-4300 - GGAGGAGCTGACGGAGA 17 4286
BCLllA-4301 - GGGACGAGGAGGAAGAG 17 4287
BCLllA-4302 - AGGAGGAGGAGCTGACG 17 4288
BCLllA-4303 - ACGAGGAAGAGGAAGAA 17 4289
BCLllA-4304 - AGGAAGAGGAAGAAGAG 17 4290
BCLllA-4305 - AGGAAGAGGAGGACGAC 17 4291
BCLllA-4306 - AGGAGGACGACGAGGAA 17 4292
BCLllA-4307 - GGAGGAGGAGGAGCTGA 17 4293
BCLllA-4308 - GGAAGAGGAGGACGACG 17 4294
BCLllA-4309 - GGAGGAAGAGGAGGACG 17 4295
BCLllA-4310 - GGAAGAGGAAGAAGAGG 17 4296
BCLllA-4311 - AGGAGGAGGAGGAGCTG 17 4297
BCLllA-4312 - CGAGGAAGAGGAAGAAG 17 4298
BCLllA-4313 - GGACGACGAGGAAGAGG 17 4299
BCLllA-4314 - GGAGGACGACGAGGAAG 17 4300
BCLllA-4315 - CGACGAGGAAGAGGAAG 17 4301
BCLllA-4316 - AGAGGAGGACGACGAGG 17 4302
BCLllA-4317 - AAGAAGAGGAGGAAGAG 17 4303
BCLllA-4318 - AGGAAGAAGAGGAGGAA 17 4304
BCLllA-4319 - AGAGGAAGAAGAGGAGG 17 4305
BCLllA-4320 - AAGAGGAGGAAGAGGAG 17 4306
BCLllA-4321 - AGGAGGAAGAGGAGGAG 17 4307
BCLllA-4322 - GGAAGAAGAGGAGGAAG 17 4308
BCLllA-4323 - AGAAGAGGAGGAAGAGG 17 4309
BCLllA-4324 - AGAGGAGGAAGAGGAGG 17 4310 I BCLllA-4325 | - | GGAGGAAGAGGAGGAGG | 17 | 4311 |
Table 5A provides exemplary targeting domains for knocking out the BCLllA gene by targeting the early coding sequence the BCLllA gene selected according to first tier parameters. The targeting domains are within first 500bp of coding sequence downstream of start codon, good orthogonality, start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 5A
Figure imgf000225_0001
BCLllA-4331 - CAGGTCACGCCAGAGGA 17 4317
BCLllA-4332 + CCTGGATGCCAACCTCC 17 4318
BCLllA-4333 + A l I GA I C I 1 1 1 1 I CA 17 4319
Table 5B provides exemplary targeting domains for knocking out the BCL11A gene by targeting the early coding sequence the BCL11A gene selected according to second tier parameters. The targeting domains target outside the first 500bp of coding sequence downstream of start codon. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 5B
Figure imgf000226_0001
BCLllA-4339 - AAC ACG CAC AG AAC ACT 17 4325
BCLllA-4340 - TTCCCAGCCACCTCTCC 17 4326
BCLllA-4341 + GGCTGGGAGGGAGGAGG 17 4327
BCLllA-4342 + TCGGACTTGACCGTCATGGG 20 4328
BCLllA-4343 - ATGGCTATGGAGCCTCCCGC 20 4329
BCLllA-4344 + TGCTCCGACGAGGAGGCAAA 20 4330
BCLllA-4345 + TGGCGGGAGGCTCCATAGCC 20 4331
BCLllA-4346 - TGCAACACGCACAGAACACT 20 4332
BCLllA-4347 + ACTTCCGTGTTCGCTTTCTA 20 4333
BCLllA-4348 - TCCTTCCCAGCCACCTCTCC 20 4334
BCLllA-4349 + GGGGGCTGGGAGGGAGGAGG 20 4335
Table 6A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary gRNA pairs are: BCL11A- 5210 and BCLl lA-5204, BCLl lA-5211 and BCLl lA-5204, BCLl lA-5172 and BCLHA-
5176, BCLl lA-5172 and BCLl lA-5186, BCLl lA-5179 and BCLl lA-5176, or BCLl lA-5179 and BCLl lA-5186. In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene. For example, gRNA pairs that target upstream (i.e., 5') of the enhancer region in the BCLllA gene (e.g., BCLl lA-5210 and BCLl lA-5204, or BCLl lA-5211 and BCLHA- 5204) can be paired with gRNA pairs that target downstream (i.e., 3') of the enhancer region in the BCLllA gene (e.g., BCLl lA-5172 and BCLl lA-5176, BCLl lA-5172 and BCLl lA-5186, BCLl lA-5179 and BCLl lA-5176, or BCLl lA-5179 and BCLl lA-5186).
Table 6A
Figure imgf000228_0001
Table 6B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to second tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 6B
Figure imgf000229_0001
BCLllA-5179 + AATACTTACTGTACTGC 17 3' 4343
BCLllA-5180 + ACA ACTTGTGTTG CACT 17 5' 4344
BCLllA-5181 + ATACTTACTGTACTGCA 17 3' 4345
BCLllA-5182 + ATTCACTGGAAACCCTGTTA 20 3' 4346
BCLllA-5183 + ATTTAAGACGGGAAAAC 17 5' 4347
BCLllA-5184 + CACTGGAAACCCTGTTA 17 3' 4348
BCLllA-5185 + CTACTTATACAATTCAC 17 3' 4349
BCLllA-5186 - CTATTTACAGCCATAAC 17 3' 4350
BCLllA-5187 - TAAGAAAGCAGTGTAAGGCT 20 5' 4351
BCLllA-5188 + TAC ACA ACTTGTGTTG CACT 20 5' 4352
BCLllA-5189 + TACTGTACTGCAGGGGAATT 20 3' 4353
BCLllA-5190 + TACTTACTGTACTGCAG 17 3' 4354
BCLllA-5191 + TGTACTGCAGGGG A ATT 17 3' 4355
Table 6C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to third tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an
embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 6C
Figure imgf000231_0001
Table 6D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to forth tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or (65.1 to 65.3kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. pyogenes Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 6D
Figure imgf000233_0001
Table 7A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 7A
Figure imgf000234_0001
Table 7B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to second tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single- strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 7B
Figure imgf000236_0001
Table 7C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to third tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCLllA gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Table 7C
Figure imgf000238_0001
Table 7D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to forth tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. The table provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCL11A gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCL11A gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Any of the targeting domains in the table can be used with a S. aureus Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 7D
Figure imgf000239_0001
Length
BCLllA-5256 + AAAAATTTAAGACGGGAAAA 20 5' 4420
BCLllA-5257 + AAAACAGGAAGATGCATTCT 20 5' 4421
BCLllA-5258 - AAAA 1 AGAAA 1 I MA 17 3' 4422
BCLllA-5259 + AAAATACTTACTGTACTG CA 20 3' 4423
BCLllA-5260 + AAAATTTAAGACGGGAAAAC 20 5' 4424
BCLllA-5261 + AAACAGGAAGATGCATT 17 5' 4425
BCLllA-5262 - AAAGG I 111 I GAAI I A 20 5' 4426
BCLllA-5263 + AAATACTTACTGTACTG 17 3' 4427
BCLllA-5264 + AAATACTTACTGTACTGCAG 20 3' 4428
BCLllA-5265 - AAGAAAGCAGTGTAAGG 17 5' 4429
BCLllA-5266 - AAGGCIGI 11 IGGAAIG 17 5' 4430
BCLllA-5267 - AAGIAI 11 ICI 1 ICAI 1 17 3' 4431
BCLllA-5268 + AATACTTACTGTACTGC 17 3' 4432
BCLllA-5269 - A ATTAG AATAAAAG G CTGTT 20 5' 4433
BCLllA-5270 + AAI IAI 111 AC 1 AG 1 AA 11 20 5' 4434
BCLllA-5271 + AATTTAAGACGGGAAAA 17 5' 4435
BCLllA-5272 + A C AG G A AG ATG C ATTCT 17 5' 4436
BCLllA-5273 - ACAGTAAGTATTTTCTTTCA 20 3' 4437
BCLllA-5274 + ACATAAAAATTTAAGAC 17 5' 4438
BCLllA-5275 + ACTTTCTAGTTTTG CTTAAC 20 3' 4439
BCLllA-5276 + AGAAAATACTTACTGTACTG 20 3' 4440
BCLllA-5277 - AG AATAAAAGG CTGTTT 17 5' 4441
BCLllA-5278 - A AAAA 1 AGAAAG 1 I MA 20 3' 4442
BCLllA-5279 - AGTAAGTATTTTCTTTCATT 20 3' 4443
BCLllA-5280 - A IAI 11 ICI 1 ICAI IG 17 3' 4444
BCLllA-5281 - AGTGAATTGTATAAGTAGCA 20 3' 4445
BCLllA-5282 + ATACTTACTGTACTG CA 17 3' 4446
BCLllA-5283 + ATCTCACATAAAAATTTAAG 20 5' 4447
BCLllA-5284 - ATTAAGAAAGCAGTGTAAGG 20 5' 4448
BCLllA-5285 - ATTAG AATAAAAG G CTGTTT 20 5' 4449
BCLllA-5286 + Al IAI 111 ACI AG I AAI IA 20 5' 4450
BCLllA-5287 + ATTTAAGACGGGAAAAC 17 5' 4451
BCLllA-5288 + Al 111 AC 1 AG 1 AA 1 IA 17 5' 4452
BCLllA-5289 - Al 11 ICAIGI 1 AAGCAAAAC 20 3' 4453
BCLllA-5290 + CACATAAAAATTTAAGA 17 5' 4454
BCLllA-5291 - CAGIAAGIAI 11 ICI 1 ICAI 20 3' 4455
BCLllA-5292 - CCGTCTTAAATTTTTAT 17 5' 4456
BCLllA-5293 + CTCACATAAAAATTTAAGAC 20 5' 4457
BCLllA-5294 - 1 AAAAGGCI 111 IGGAAIG 20 5' 4458
BCLllA-5295 - 1 AAGIAI I I ICI 1 ICAI 17 3' 4459
BCLllA-5296 - 1 AAGIAI I I ICI 1 ICAI IGG 20 3' 4460 BCLllA-5297 - TAATTCACTAGTAAAATAAT 20 5' 4461
BCLllA-5298 + TACTTACTGTACTG CAG 17 3' 4462
BCLllA-5299 - TAG A ATAAAAG G CTGTT 17 5' 4463
BCLllA-5300 + TATTTTACTAGTGAATT 17 5' 4464
BCLllA-5301 + TCACATAAAAATTTAAG 17 5' 4465
BCLllA-5302 + TCTCACATAAAAATTTAAGA 20 5' 4466
BCLllA-5303 + I G I 1 I CA I 1 1 1 1 I GC I GACA 20 3' 4467
BCLllA-5304 - TGTTTTGGAATGTAGAGAGG 20 5' 4468
BCLllA-5305 - 1 I AAA I 1 1 1 I A I G I GAG 17 5' 4469
BCLllA-5306 + TTATTCTAATTATTTTACTA 20 5' 4470
BCLllA-5307 - TTCACTAGTAAAATAAT 17 5' 4471
BCLllA-5308 - TTCATGTTAAG CAAAAC 17 3' 4472
BCLllA-5309 + 1 I CA I 1 1 1 1 I GC I GACA 17 3' 4473
BCLllA-5310 - 1 I CCCG I C I I AAA I 1 1 1 I A I 20 5' 4474
BCLllA-5311 + TTCTAATTATTTTACTA 17 5' 4475
BCLllA-5312 + TTCTAGTTTTG CTTAAC 17 3' 4476
BCLllA-5313 - TTCTGTGTCAG CAAAAA 17 3' 4477
BCLllA-5314 - TTTGGAATGTAGAGAGG 17 5' 4478
BCLllA-5315 - TTTGGAATGTAGAGAGGCAG 20 5' 4479
Table 8 provides exemplary targeting domains for removing (e.g., deleting) the enhancer region in the BCLllA gene selected according to first tier parameters. The targeting domains are within a region 5' (51.5 to 51.7kb downstream of transcription start site, TSS) or 3' (65.1 to 65.3kb downstream of TSS) of enhancer, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double strand break (Cas9 nuclease) or a single-strand break (Cas9 nickase). In an embodiment, dual targeting is used to create two double strand breaks to remove the enhancer region in the BCLllA gene, e.g., the first gRNA is used to target upstream (i.e., 5') of the enhancer region in the BCLllA gene and the second gRNA is used to target downstream (i.e., 3') of the enhancer region in the BCLllA gene.
Any of the targeting domains in the table can be used with a N. meningitidis Cas9 (nickase) molecule to generate a single strand break. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
In an embodiment, four gRNAs (e.g., two pairs) are used to target four Cas9 nickases to create four nicks to remove the enhancer region in the BCL11A gene, e.g., the first pair of gRNAs are used to target upstream (i.e., 5') of the enhancer region in the BCL11A gene and the second pair of gRNAs are used to target downstream (i.e., 3') of the enhancer region in the BCL11A gene.
Table 8
Figure imgf000242_0001
Table 9A provides exemplary targeting domains for knocking down expression of the
BCL11A gene according to first tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 9A
Figure imgf000242_0002
Table 9B provides exemplary targeting domains for knocking down expression of the BCL11A gene according to second tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 9B
Figure imgf000243_0001
BCLllA-4380 + TTTACCTCGACTCTCGG 17 4512
BCLllA-4381 - TTTAGAGTCCGCGTGTG 17 4513
Table 9C provides exemplary targeting domains for knocking down expression of the BCL11A gene according to third tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 9C
Figure imgf000244_0001
BCLllA-4403 + GAGAGAAGAGAGATAGA 17 4535
BCLllA-4404 + GAGAGAAGGGGAGGAGGGAA 20 4536
BCLllA-4405 + GAGAGAGAGAAGAGAGATAG 20 4537
BCLllA-4406 + G AG AG AG ATG A A A A A A A 17 4538
BCLllA-4407 + GAGCAGGAGAGAAGGGG 17 4539
BCLllA-4408 + GAGCAGGAGAGAAGGGGAGG 20 4540
BCLllA-4409 + GAGCCGGGTTAGAAAGA 17 4541
BCLllA-4410 + GAGGGGAGGGGGCGCTG 17 4542
BCLllA-4411 + GAGGGGCGGGCCGAGGGGAG 20 4543
BCLllA-4412 + GAGGGGGAGGTGCGGGG 17 4544
BCLllA-4413 + GAGGGGGAGGTGCGGGGCGG 20 4545
BCLllA-4414 - GAG GTA A A AG AG ATA A A 17 4546
BCLllA-4415 - GAGTCCGCGTGTGTGGG 17 4547
BCLllA-4416 - GAGTCTCCTTCTTTCTAACC 20 4548
BCLllA-4417 - GA I GAAGA I A I 1 1 1 C I 17 4549
BCLllA-4418 - GCAAAAGCGAGGGGGAGAGA 20 4550
BCLllA-4419 - GCACCTCCCCCTCCCCGCAC 20 4551
BCLllA-4420 - G CACTTG AACTTG C AG CTC A 20 4552
BCLllA-4421 + GCAGGGAAGATGAATTG 17 4553
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 4554
BCLllA-4423 + G C AG GG GTG G GAG G AAA 17 4555
BCLllA-4424 + GCAGGGGTGGGAGGAAAGGG 20 4556
BCLllA-4425 + GCCAATGGCCAGTGCGGGGA 20 4557
BCLllA-4426 - GCCACCCCTTTCTTCTCTCC 20 4558
BCLllA-4427 + GCCAGACGCGGCCCCCG 17 4559
BCLllA-4428 - GCCCCAGCGCCCCCTCCCCT 20 4560
BCLllA-4429 + GCCCCCGGGGGAGGGGC 17 4561
BCLllA-4430 - GCCCGCCCCTCCCCCGG 17 4562
BCLllA-4431 + GCCGAGGGGAGGGGGCGCTG 20 4563
BCLllA-4432 + GCCGCGGCGGTGGCGTGGCC 20 4564
BCLllA-4433 + GCCGGGAGAGAAGAAAG 17 4565
BCLllA-4434 + GCCGGGAGAGAAGAAAGGGG 20 4566
BCLllA-4435 + GCGAGACATGGTGGGCTGCG 20 4567
BCLllA-4436 + GCGCAGGGAAGATGAATTGT 20 4568
BCLllA-4437 + GCGCCGCGGCGGTGGCG 17 4569
BCLllA-4438 - GCGCTCGCTGCGGCCAC 17 4570
BCLllA-4439 + GCGGCCCCCGGGGGAGGGGC 20 4571
BCLllA-4440 - GCGGCGCTCGCTGCGGCCAC 20 4572
BCLllA-4441 + GCGGCGGCGGCGGCGGC 17 4573
BCLllA-4442 + GCGGCGGCGGCGGCGGCGGC 20 4574
BCLllA-4443 + GCGGCGGCGGCGGCGGCGGG 20 4575
BCLllA-4444 + GCGGCGGCGGCGGCGGG 17 4576 BCLllA-4445 + GCGGCGGGCGGACGACGGCT 20 4577
BCLllA-4446 + GCGGCGGTGGCGTGGCC 17 4578
BCLllA-4447 + GCGGGCGGCGGCGGCGG 17 4579
BCLllA-4448 + GCGGGCGGCGGCGGCGGCGG 20 4580
BCLllA-4449 + GCGGGGAGGGGGAGGTG 17 4581
BCLllA-4450 + GCGTGGCCGGGAGAGAAGAA 20 4582
BCLllA-4451 + GCTCCCCCCCACACACG 17 4583
BCLllA-4452 + GCTGGGGTTTGCCTTGCTTG 20 4584
BCLllA-4453 + GGACAAGCCAATGGCCAGTG 20 4585
BCLllA-4454 + GGACACACATCAGGGGC 17 4586
BCLllA-4455 + GGACAGAGACACACAAAACA 20 4587
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 4588
BCLllA-4457 - GGACTAGAAGCAAAAGCGAG 20 4589
BCLllA-4458 + GGAGAGAAGAAAGGGGTGGC 20 4590
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 4591
BCLllA-4460 + GGAGAGCCGGGTTAGAAAGA 20 4592
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 4593
BCLllA-4462 + GGAGGGGGAGGTGCGGGGCG 20 4594
BCLllA-4463 + GGAGGGGGCGCTGGGGCCGC 20 4595
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 4596
BCLllA-4465 + GGCAGGGGTGGGAGGAA 17 4597
BCLllA-4466 - GGCCACTGGTGAGCCCG 17 4598
BCLllA-4467 + GGCCCCCGGGGGAGGGG 17 4599
BCLllA-4468 - GGCCCGCCCCTCCCCCG 17 4600
BCLllA-4469 + GGCCGAGGGGAGGGGGCGCT 20 4601
BCLllA-4470 + GGCCGCAGCGAGCGCCG 17 4602
BCLllA-4471 + GGCCGCAGCGAGCGCCGCGG 20 4603
BCLllA-4472 + GGCCGCGGGCTCACCAG 17 4604
BCLllA-4473 + GGCCGGGAGAGAAGAAA 17 4605
BCLllA-4474 + GGCGAGACATGGTGGGCTGC 20 4606
BCLllA-4475 + GG CG AG CAGG AG AG AAG 17 4607
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 4608
BCLllA-4477 + GGCGCAGGGAAGATGAATTG 20 4609
BCLllA-4478 + GGCGGCGGCGGCGGCGG 17 4610
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 4611
BCLllA-4480 + GGCGGGCCGAGGGGAGG 17 4612
BCLllA-4481 + GGCTGCGGGGCGGGCGG 17 4613
BCLllA-4482 + GGCTGCGGGGCGGGCGGCGG 20 4614
BCLllA-4483 + GGGAGAGAAGAAAGGGG 17 4615
BCLllA-4484 + GGGAGGAAAGGGTGGGG 17 4616
BCLllA-4485 + GGGAGGGGCGGGCCGAG 17 4617
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 4618 BCLllA-4487 + GGGAGGGGGAGGTGCGGGGC 20 4619
BCLllA-4488 + GGGAGGGGGCGCTGGGGCCG 20 4620
BCLllA-4489 + GGGAGGTGCGGGGCGGG 17 4621
BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 4622
BCLllA-4491 + GGGCGAGCAGGAGAGAA 17 4623
BCLllA-4492 + GGGCGGGCCGAGGGGAG 17 4624
BCLllA-4493 + GGGGAAGCTCACACCAA 17 4625
BCLllA-4494 + GGGGAGGGGCGGGCCGA 17 4626
BCLllA-4495 + GGGGAGGGGGAGGTGCG 17 4627
BCLllA-4496 + GGGGAGGGGGAGGTGCGGGG 20 4628
BCLllA-4497 + GGGGAGGTGCGGGGCGG 17 4629
BCLllA-4498 - GGGGCCGCGTCTGGCGTCCG 20 4630
BCLllA-4499 + GGGGCGGGCCGAGGGGA 17 4631
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 4632
BCLllA-4501 + GGGGCGGGCGGCGGCGGCGG 20 4633
BCLllA-4502 + GGGGGAGGGGCGGGCCG 17 4634
BCLllA-4503 + GGGGGAGGTGCGGGGCG 17 4635
BCLllA-4504 + GGGGGCGCTGGGGCCGC 17 4636
BCLllA-4505 + GGGGTGGCAGGGGTGGG 17 4637
BCLllA-4506 + GGGGTGGGAGGAAAGGG 17 4638
BCLllA-4507 + GGGGTGGGAGGAAAGGGTGG 20 4639
BCLllA-4508 + G G G GTTTG CCTTG CTTG 17 4640
BCLllA-4509 + GGGTGGGAGGAAAGGGT 17 4641
BCLllA-4510 + GGGTGGGAGGAAAGGGTGGG 20 4642
BCLllA-4511 - G GT A A A AG AG AT A A AG G 17 4643
BCLllA-4512 + GGTGGCAGGGGTGGGAGGAA 20 4644
BCLllA-4513 + GGTGGGAGGAAAGGGTG 17 4645
BCLllA-4514 + GGTGGGAGGAAAGGGTGGGG 20 4646
BCLllA-4515 + GGTTCCAGATGGGATGA 17 4647
BCLllA-4516 - GTATTATTTCTAATTTATTT 20 4648
BCLllA-4517 - GTCGAGGTAAAAGAGATAAA 20 4649
BCLllA-4518 + GTGCGGGGAGGGGGAGGTGC 20 4650
BCLllA-4519 + GTGCGGGGCGGGGGGCTCCG 20 4651
BCLllA-4520 + GTGGCAGGGGTGGGAGGAAA 20 4652
BCLllA-4521 + GTGGCCGGGAGAGAAGAAAG 20 4653
BCLllA-4522 + GTGGGAGGAAAGGGTGG 17 4654
BCLllA-4523 + GTGGGCTGCGGGGCGGG 17 4655
BCLllA-4524 + GTGGGCTGCGGGGCGGGCGG 20 4656
BCLllA-4525 - GTGTGTGGGGGGGAGCA 17 4657
Table 9D provides exemplary targeting domains for knocking down expression of the BCLllA gene according to forth tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 9D
Figure imgf000248_0001
BCLllA-4553 + ACAAGCCAATGGCCAGTGCG 20 4685
BCLllA-4554 + ACACACAAAACATGGGC 17 4686
BCLllA-4555 + ACACCAATGGACACACATCA 20 4687
BCLllA-4556 + AC ATG GGCAGGGCGAGC 17 4688
BCLllA-4557 + ACCAATGGACACACATC 17 4689
BCLllA-4558 - ACCCCAGCACTTAAGCAAAC 20 4690
BCLllA-4559 - ACCCCTTTCTTCTCTCC 17 4691
BCLllA-4560 + ACGCCAGACGCGGCCCC 17 4692
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 4693
BCLllA-4562 + ACGCGGCCCCCGGGGGA 17 4694
BCLllA-4563 + ACGG CA ATG GTTCC AG A 17 4695
BCLllA-4564 - ACTAG A AG CAAAAGCGA 17 4696
BCLllA-4565 - AC 1 A 1 AAGA 1 A 1 1 1 I C I C 20 4697
BCLllA-4566 - ACTTG AACTTG CAG CTC 17 4698
BCLllA-4567 - ACTTG AACTTG CAG CTCAG G 20 4699
BCLllA-4568 - AGAAAAACCTCCGAGAGTCG 20 4700
BCLllA-4569 + AGAAGAAAGGGGTGGCA 17 4701
BCLllA-4570 + AGAAGGGGAGGAGGGAA 17 4702
BCLllA-4571 + AGACACACAAAACATGGGCA 20 4703
BCLllA-4572 + AGACATGGTGGGCTGCG 17 4704
BCLllA-4573 + AGACATGGTGGGCTGCGGGG 20 4705
BCLllA-4574 + AGACCAGGACAAGCCAA 17 4706
BCLllA-4575 + AGACGCGGCCCCCGGGGGAG 20 4707
BCLllA-4576 + AGAGAAGAAAGGGGTGGCAG 20 4708
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 4709
BCLllA-4578 + AGAGACACACAAAACAT 17 4710
BCLllA-4579 + AGAGAGAAGAGAGATAG 17 4711
BCLllA-4580 + AGAGAGAGAAGAGAGATAGA 20 4712
BCLllA-4581 + AGAGAGAGAGATGAAAAAAA 20 4713
BCLllA-4582 - AGAGTCCGCGTGTGTGG 17 4714
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 4715
BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 4716
BCLllA-4585 + AG CCA ATG GCCAGTG CG 17 4717
BCLllA-4586 + AGCCAATGGCCAGTGCGGGG 20 4718
BCLllA-4587 - AGCCCCTGATGTGTGTCCAT 20 4719
BCLllA-4588 + AGCGAGCGCCGCGGCGG 17 4720
BCLllA-4589 + AG CTG C AAGTTC AAGTG 17 4721
BCLllA-4590 - AG G ACTAG AAG C AAAAG CG A 20 4722
BCLllA-4591 + AGGAGAGAAGGGGAGGA 17 4723
BCLllA-4592 + AGGGCGAGCAGGAGAGA 17 4724
BCLllA-4593 + AGGGGCGGGCCGAGGGG 17 4725
BCLllA-4594 + AGGGGCGGGCCGAGGGGAGG 20 4726 BCLllA-4595 + AGGGGGAGGTGCGGGGC 17 4727
BCLllA-4596 + AGGGGGAGGTGCGGGGCGGG 20 4728
BCLllA-4597 + AGGGGGCGCTGGGGCCG 17 4729
BCLllA-4598 + AGGGGTGGGAGGAAAGGGTG 20 4730
BCLllA-4599 - AGGTAAAAGAGATAAAG 17 4731
BCLllA-4600 - AGTCCGCGTGTGTGGGG 17 4732
BCLllA-4601 - AGTCGAGGTAAAAGAGATAA 20 4733
BCLllA-4602 + AGTGCGGGGAGGGGGAGGTG 20 4734
BCLllA-4603 + AGTG GCCG CAG CG AG CG CCG 20 4735
BCLllA-4604 + ATAATTATTATTACTATTAT 20 4736
BCLllA-4605 + ATCTCTTTTACCTCGACTCT 20 4737
BCLllA-4606 + ATGGCCAGTGCGGGGAG 17 4738
BCLllA-4607 + ATGGTGGGCTGCGGGGC 17 4739
BCLllA-4608 + ATGGTGGGCTGCGGGGCGGG 20 4740
BCLllA-4609 + ATTATTATTACTATTAT 17 4741
BCLllA-4610 - ATTTTAG AGTCCG CGTGTGT 20 4742
BCLllA-4611 - CAAAAGCGAGGGGGAGAGAG 20 4743
BCLllA-4612 + CAAAAGTG CATACACG G C AA 20 4744
BCLllA-4613 + CAAG CCA ATG GCCAGTG 17 4745
BCLllA-4614 + CAATG G AC ACAC ATC AG 17 4746
BCLllA-4615 + CAATG G CCAGTG CG GG G 17 4747
BCLllA-4616 + CAATGGCCAGTGCGGGGAGG 20 4748
BCLllA-4617 + CAATG GTTCC AG ATGG G ATG 20 4749
BCLllA-4618 + CACACAAAACATGGGCA 17 4750
BCLllA-4619 + CACACCAATGGACACACATC 20 4751
BCLllA-4620 + CACCAATGGACACACATCAG 20 4752
BCLllA-4621 - CACCG CCG CGG CG CTCG CTG 20 4753
BCLllA-4622 - CACTGGCCATTGGCTTGTCC 20 4754
BCLllA-4623 - C ACTTG AACTTG CAG CTCAG 20 4755
BCLllA-4624 + CAGACGCGGCCCCCGGGGGA 20 4756
BCLllA-4625 + CAGAGACACACAAAACA 17 4757
BCLllA-4626 - CAG G ACTAG AAG CAAAAG CG 20 4758
BCLllA-4627 + CAGGAGAGAAGGGGAGG 17 4759
BCLllA-4628 + C AG G G A AG ATG A ATTGT 17 4760
BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 4761
BCLllA-4630 + CAGGGGTGGGAGGAAAGGGT 20 4762
BCLllA-4631 + CATGGTGGGCTGCGGGG 17 4763
BCLllA-4632 + CCAATGGACACACATCA 17 4764
BCLllA-4633 + CCAATGGCCAGTGCGGGGAG 20 4765
BCLllA-4634 + CCAGACGCGGCCCCCGG 17 4766
BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 4767
BCLllA-4636 - CCAGCACTTAAGCAAAC 17 4768 BCLllA-4637 - CCAGCGCCCCCTCCCCT 17 4769
BCLllA-4638 + CCAGTGCGGGGAGGGGG 17 4770
BCLllA-4639 - CCCAGCACTTAAGCAAA 17 4771
BCLllA-4640 - CCCCCGGGGGCCGCGTC 17 4772
BCLllA-4641 - CCCCTCCCCGCACTGGCCAT 20 4773
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 4774
BCLllA-4643 + CCCGTTTG CTTAAGTG C 17 4775
BCLllA-4644 - CCCTCGGCCCGCCCCTCCCC 20 4776
BCLllA-4645 - CCCTGATGTGTGTCCAT 17 4777
BCLllA-4646 + CCGAGGGGAGGGGGCGC 17 4778
BCLllA-4647 - CCGCGTGTGTGGGGGGGAGC 20 4779
BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 4780
BCLllA-4649 + CCGTTTG CTTAAGTG CT 17 4781
BCLllA-4650 - CCTCCCCCGGGGGCCGCGTC 20 4782
BCLllA-4651 - CCTCCCCCTCCCCGCAC 17 4783
BCLllA-4652 - CCTCGGCCCGCCCCTCCCCC 20 4784
BCLllA-4653 + CCTGCTCCCCCCCACACACG 20 4785
BCLllA-4654 + CGAGACATGGTGGGCTG 17 4786
BCLllA-4655 + CGAGCGCCGCGGCGGTGGCG 20 4787
BCLllA-4656 + CGAGGGGAGGGGGCGCT 17 4788
BCLllA-4657 - CGAGGTAAAAGAGATAA 17 4789
BCLllA-4658 - CGAGGTAAAAGAGATAAAGG 20 4790
BCLllA-4659 - CG C ACTTG AACTTG CAG CTC 20 4791
BCLllA-4660 + CG CAG CG AG CG CCG CG G 17 4792
BCLllA-4661 + CGCAGCGAGCGCCGCGGCGG 20 4793
BCLllA-4662 + CGCCAGACGCGGCCCCC 17 4794
BCLllA-4663 - CGCCGCGGCGCTCGCTG 17 4795
BCLllA-4664 + CGCCGCGGCGGTGGCGTGGC 20 4796
BCLllA-4665 + CGCGGCCCCCGGGGGAG 17 4797
BCLllA-4666 + CGCGGCCCCCGGGGGAGGGG 20 4798
BCLllA-4667 + CGCGGCGGTGGCGTGGC 17 4799
BCLllA-4668 - CGCGTGTGTGGGGGGGAGCA 20 4800
BCLllA-4669 + CG G C A ATG GTTC CAG AT 17 4801
BCLllA-4670 - CGGCCACGCCACCGCCG 17 4802
BCLllA-4671 - CGGCCCGCCCCTCCCCC 17 4803
BCLllA-4672 + CGGCGAGACATGGTGGGCTG 20 4804
BCLllA-4673 + CGGCGGCGGCGGGCGGACGA 20 4805
BCLllA-4674 + CGGCGGCGGGCGGACGA 17 4806
BCLllA-4675 + CGGGGAGGGGGAGGTGC 17 4807
BCLllA-4676 + CGGGGCGGGGGGCTCCG 17 4808
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 4809
BCLllA-4678 + CGTGGCCGGGAGAGAAGAAA 20 4810 BCLllA-4679 - CGTGTGTGGGGGGGAGC 17 4811
BCLllA-4680 + CGTTTG CTTAAGTG CTG 17 4812
BCLllA-4681 - CTAG AAG C AAAAG CG AG 17 4813
BCLllA-4682 - CTCCCCGCACTGGCCAT 17 4814
BCLllA-4683 - CTCGGCCCGCCCCTCCCCCG 20 4815
BCLllA-4684 + CTGAGCTGCAAGTTCAAGTG 20 4816
BCLllA-4685 + CTGCGAACTTGAACGTC 17 4817
BCLllA-4686 + CTGGACATGAAAAAGAGACC 20 4818
BCLllA-4687 + CTGTCTC AAAAGTG C ATACA 20 4819
BCLllA-4688 + CTTGAACGTCAGGAGTC 17 4820
BCLllA-4689 - CTTG AACTTG CAG CTCA 17 4821
BCLllA-4690 - CTTG AACTTG CAG CTC AGG G 20 4822
BCLllA-4691 + CTTGCGGCGAGACATGG 17 4823
BCLllA-4692 + GTTCACATCGGGAGAGC 17 4824
BCLllA-4693 + T A AT A CAAAGATGGCGC 17 4825
BCLllA-4694 + TAATTATTATTACTATTATT 20 4826
BCLllA-4695 + TACACGGCAATGGTTCCAGA 20 4827
BCLllA-4696 + TAGAAATAATACAAAGA 17 4828
BCLllA-4697 - TAG A AG C AAAAG CG AG G 17 4829
BCLllA-4698 - TAG AGTCCG CGTGTGTG 17 4830
BCLllA-4699 - TAGAGTCCGCGTGTGTGGGG 20 4831
BCLllA-4700 - TCCCGGCCACGCCACCGCCG 20 4832
BCLllA-4701 + TCCCGTTTG CTTAAGTG CTG 20 4833
BCLllA-4702 + TCCCTGCGAACTTGAACGTC 20 4834
BCLllA-4703 - TCGAGGTAAAAGAGATAAAG 20 4835
BCLllA-4704 - TCGGCCCGCCCCTCCCC 17 4836
BCLllA-4705 - TCGGCCCGCCCCTCCCCCGG 20 4837
BCLllA-4706 + TCTCAAAAGTGCATACA 17 4838
BCLllA-4707 - TCTC CTTCTTTCTA AC C 17 4839
BCLllA-4708 + TCTTTTACCTCGACTCT 17 4840
BCLllA-4709 - TG AACTTG CAG CTCAG G 17 4841
BCLllA-4710 - TGCGGCCACTGGTGAGCCCG 20 4842
BCLllA-4711 + TGCGGGGAGGGGGAGGTGCG 20 4843
BCLllA-4712 + TGCGGGGCGGGCGGCGG 17 4844
BCLllA-4713 + TGCGGGGCGGGCGGCGGCGG 20 4845
BCLllA-4714 - TG CTTA A A A A A A AG C C ATG A 20 4846
BCLllA-4715 + TGGCCAGTGCGGGGAGG 17 4847
BCLllA-4716 + TGGCCAGTGCGGGGAGGGGG 20 4848
BCLllA-4717 - TGGCCATTGGCTTGTCC 17 4849
BCLllA-4718 + TGGCCGGGAGAGAAGAA 17 4850
BCLllA-4719 + TGGGAGGAAAGGGTGGG 17 4851
BCLllA-4720 + TGGGGCCGCGGGCTCACCAG 20 4852 BCLllA-4721 + TGGTTCCAGATGGGATG 17 4853
BCLllA-4722 - TTAAAAAAAAGCCATGA 17 4854
BCLllA-4723 - TTAGAGTCCGCGTGTGTGGG 20 4855
BCLllA-4724 + TTATTATTACTATTATT 17 4856
BCLllA-4725 - TTATTTCTAATTTATTT 17 4857
BCLllA-4726 - TTATTTTG G ATGTCAAA 17 4858
BCLllA-4727 + TTCACATCGGGAGAGCC 17 4859
BCLllA-4728 + TTCCCGTTTG CTTAAGTG CT 20 4860
BCLllA-4729 + TTGAACGTCAGGAGTCTGGA 20 4861
BCLllA-4730 - TTG AACTTG CAG CTCAG 17 4862
BCLllA-4731 + TTGCTTGCGGCGAGACATGG 20 4863
BCLllA-4732 + TTGTGGGAGAGCCGTCA 17 4864
BCLllA-4733 - TTTTAG AGTCCG CGTGTGTG 20 4865
Table 10A provides exemplary targeting domains for knocking down expression of the BCL11A gene according to first tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site, good orthogonality, starts with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expres
Table 10A
Figure imgf000253_0001
BCLllA-4744 + GTCCCTGCGAACTTGAACGT 20 4876
BCLllA-4745 + GTGACGTCCCTGCGAAC 17 4877
Table 10B provides exemplary targeting domains for knocking down expression of the BCLllA gene according to second tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site, good orthogonality and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCLllA gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 10B
Figure imgf000254_0001
Table IOC provides exemplary targeting domains for knocking down expression of the BCLllA gene according to third tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site and start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table IOC
Figure imgf000255_0001
BCLllA-4790 + GAGCAGGAGAGAAGGGG 17 4922
BCLllA-4791 + GAGCAGGAGAGAAGGGGAGG 20 4923
BCLllA-4792 + GAGCCGGGTTAGAAAGA 17 4924
BCLllA-4793 + G AG CTG C AAGTTC AAGT 17 4925
BCLllA-4794 + GAGGGAGAGAGAGAGAA 17 4926
BCLllA-4795 + GAGGGGCGGGCCGAGGG 17 4927
BCLllA-4796 + GAGGGGGAGGTGCGGGG 17 4928
BCLllA-4797 + GAGGGGGCGCTGGGGCC 17 4929
BCLllA-4798 - GAGGTAAAAGAGATAAA 17 4930
BCLllA-4799 - GAGTCCGCGTGTGTGGG 17 4931
BCLllA-4800 - GAGTCGAGGTAAAAGAGATA 20 4932
BCLllA-4801 + GATAGAGGGAGAGAGAGAGA 20 4933
BCLllA-4802 - GA I GAAGA I A I 1 1 I C I C 17 4934
BCLllA-4803 - G ATGTCAAAAGG CACTG 17 4935
BCLllA-4804 - GATGTGTGTCCATTGGT 17 4936
BCLllA-4805 + G CAATG GTTCC AG ATGG G AT 20 4937
BCLllA-4806 - G C ACTTG AACTTG CAG CTCA 20 4938
BCLllA-4807 - GCAGGACTAGAAGCAAAAGC 20 4939
BCLllA-4808 + GCAGGAGAGAAGGGGAG 17 4940
BCLllA-4809 + GCAGGGAAGATGAATTG 17 4941
BCLllA-4810 + GCAGGGAAGATGAATTGTGG 20 4942
BCLllA-4811 + GCAGGGCGAGCAGGAGAGAA 20 4943
BCLllA-4812 + GCAGGGGTGGGAGGAAAGGG 20 4944
BCLllA-4813 - GCA I 1 1 1 I AAA I 1 1 1 I C 17 4945
BCLllA-4814 + GCCAATGGCCAGTGCGGGGA 20 4946
BCLllA-4815 + GCCAGACGCGGCCCCCG 17 4947
BCLllA-4816 + GCCAGACGCGGCCCCCGGGG 20 4948
BCLllA-4817 + GCCCCCGGGGGAGGGGCGGG 20 4949
BCLllA-4818 + GCCGAGGGGAGGGGGCG 17 4950
BCLllA-4819 + GCCGCGGCGGTGGCGTGGCC 20 4951
BCLllA-4820 - GCCGCGTCTGGCGTCCG 17 4952
BCLllA-4821 + GCGAGACATGGTGGGCT 17 4953
BCLllA-4822 - G CG CAG G ACTAG AAG CA AAA 20 4954
BCLllA-4823 + GCGCAGGGAAG ATG A ATTGT 20 4955
BCLllA-4824 + GCGCCGCGGCGGTGGCGTGG 20 4956
BCLllA-4825 + GCGGACGCCAGACGCGGCCC 20 4957
BCLllA-4826 + GCGGCGAGACATGGTGGGCT 20 4958
BCLllA-4827 + GCGGCGGTGGCGTGGCC 17 4959
BCLllA-4828 + GCGGGGAGGGGGAGGTG 17 4960
BCLllA-4829 + GCGGGGCGGGGGGCTCC 17 4961
BCLllA-4830 + GCGTGGCCGGGAGAGAAGAA 20 4962
BCLllA-4831 - GCGTGTGTGGGGGGGAG 17 4963 BCLllA-4832 + GCTCACCAGTGG CCG CA 17 4964
BCLllA-4833 - GCTCGCTGCGGCCACTG 17 4965
BCLllA-4834 + GCTGGACATGAAAAAGAGAC 20 4966
BCLllA-4835 + GCTTGCGGCGAGACATG 17 4967
BCLllA-4836 - GGAAAAAACCCTCATCCCAT 20 4968
BCLllA-4837 + GGAAGGGGAAGCTCACACCA 20 4969
BCLllA-4838 + GGACAAGCCAATGGCCAGTG 20 4970
BCLllA-4839 + GGACATGAAAAAGAGAC 17 4971
BCLllA-4840 + GGACGCCAGACGCGGCCCCC 20 4972
BCLllA-4841 - G G A CTAG A AG C A A A AG C 17 4973
BCLllA-4842 - G G A CTAG A AG C A A A AG CG AG 20 4974
BCLllA-4843 + GGAGAGAAGAAAGGGGTGGC 20 4975
BCLllA-4844 + GGAGAGAAGGGGAGGAGGGA 20 4976
BCLllA-4845 + GGAGAGAGAGAGAAGAGAGA 20 4977
BCLllA-4846 + GGAGAGCCGGGTTAGAAAGA 20 4978
BCLllA-4847 + GGAGGGGCGGGCCGAGGGGA 20 4979
BCLllA-4848 + GGAGGGGGAGGTGCGGG 17 4980
BCLllA-4849 + GGAGGGGGAGGTGCGGGGCG 20 4981
BCLllA-4850 + GGCAGGGCGAGCAGGAGAGA 20 4982
BCLllA-4851 + GGCAGGGGTGGGAGGAAAGG 20 4983
BCLllA-4852 - GGCCGCGTCTGGCGTCC 17 4984
BCLllA-4853 + GGCGAGCAGGAGAGAAG 17 4985
BCLllA-4854 + GGCGAGCAGGAGAGAAGGGG 20 4986
BCLllA-4855 + GGCGCAGGGAAG ATG A ATTG 20 4987
BCLllA-4856 - G G CG CTCG CTG CGGCCACTG 20 4988
BCLllA-4857 + GGCGGCGGCGGCGGCGG 17 4989
BCLllA-4858 + GGCGGCGGCGGCGGCGGCGG 20 4990
BCLllA-4859 + GGCGGTGGCGTGGCCGG 17 4991
BCLllA-4860 + GGCGTGGCCGGGAGAGAAGA 20 4992
BCLllA-4861 + GGGAAGATGAATTGTGG 17 4993
BCLllA-4862 + GGGAGAGAAGAAAGGGGTGG 20 4994
BCLllA-4863 + GGGAGAGCCGGGTTAGA 17 4995
BCLllA-4864 + GGGAGAGCCGGGTTAGAAAG 20 4996
BCLllA-4865 + GGGAGGAAAGGGTGGGG 17 4997
BCLllA-4866 + GGGAGGGGCGGGCCGAG 17 4998
BCLllA-4867 + GGGAGGGGCGGGCCGAGGGG 20 4999
BCLllA-4868 + GGGAGGGGGAGGTGCGGGGC 20 5000
BCLllA-4869 + GGGCAGGGCGAGCAGGA 17 5001
BCLllA-4870 + GGGCAGGGCGAGCAGGAGAG 20 5002
BCLllA-4871 + GGGCCGAGGGGAGGGGGCGC 20 5003
BCLllA-4872 + GGGCGAGCAGGAGAGAA 17 5004
BCLllA-4873 + GGGCGAGCAGGAGAGAAGGG 20 5005 BCLllA-4874 + GGGGAGGGGCGGGCCGA 17 5006
BCLllA-4875 + GGGGAGGGGCGGGCCGAGGG 20 5007
BCLllA-4876 + GGGGAGGGGGAGGTGCGGGG 20 5008
BCLllA-4877 + GGGGAGGGGGCGCTGGGGCC 20 5009
BCLllA-4878 - GGGGCCGCGTCTGGCGTCCG 20 5010
BCLllA-4879 + GGGGCGGGCCGAGGGGA 17 5011
BCLllA-4880 + GGGGGAGGGGCGGGCCG 17 5012
BCLllA-4881 + GGGGGAGGTGCGGGGCG 17 5013
BCLllA-4882 - GGGGGCCGCGTCTGGCGTCC 20 5014
BCLllA-4883 + GGGGTGGCAGGGGTGGG 17 5015
BCLllA-4884 + GGGGTGGGAGGAAAGGG 17 5016
BCLllA-4885 + GGGGTGGGAGGAAAGGGTGG 20 5017
BCLllA-4886 + GGGTGGCAGGGGTGGGAGGA 20 5018
BCLllA-4887 + GGGTGGGAGGAAAGGGT 17 5019
BCLllA-4888 + GGGTGGGAGGAAAGGGTGGG 20 5020
BCLllA-4889 - GGTAAAAGAGATAAAGG 17 5021
BCLllA-4890 + GGTGCGGGGCGGGGGGCTCC 20 5022
BCLllA-4891 + GGTGGGAGGAAAGGGTG 17 5023
BCLllA-4892 + GGTGGGAGGAAAGGGTGGGG 20 5024
BCLllA-4893 + GGTTAGAAAGAAGGAGACTC 20 5025
BCLllA-4894 + GGTTTGCCTTGCTTGCG 17 5026
BCLllA-4895 - GTCGAGGTAAAAGAGATAAA 20 5027
BCLllA-4896 + GTGGCCGGGAGAGAAGA 17 5028
BCLllA-4897 + GTGGGAGGAAAGGGTGG 17 5029
Table 10D provides exemplary targeting domains for knocking down expression of the BCL11A gene according to forth tier parameters. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site and do not start with G. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 10D
Figure imgf000258_0001
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-4898 + AAAAAAAAAAAAAAAAA 17 5030
BCLllA-4899 + AAAAAAAAAAAAAAAAAAAA 20 5031
BCLllA-4900 + AAAAAAAAAAAAAAAAAAAG 20 5032
BCLllA-4901 + AAAAAAAAAAAAAAAAAAGA 20 5033
BCLllA-4902 + AAAAAAAAAAAAAAAAG 17 5034
BCLllA-4903 + AAAAAAAAAAAAAAAAGAGG 20 5035
BCLllA-4904 + AAAAAAAAAAAAAAAGA 17 5036
BCLllA-4905 + A A A A A A A A A A AAA AG AG G G A 20 5037
BCLllA-4906 + A A A A A A A A A AAA AG AG G 17 5038
BCLllA-4907 + AAAAAAAAAAAAGAGGGAGA 20 5039
BCLllA-4908 + A A A A A A A A A A AG AG G G A 17 5040
BCLllA-4909 + AAAAAAAAAAGAGGGAGAGA 20 5041
BCLllA-4910 + AAAAAAAAAGAGGGAGA 17 5042
BCLllA-4911 + AAAAAAAAGAGGGAGAGAGA 20 5043
BCLllA-4912 + AAAAAAAGAGGGAGAGA 17 5044
BCLllA-4913 + AAAAAATGGCAAAAGCCCCC 20 5045
BCLllA-4914 - AAAAACCCTCATCCCAT 17 5046
BCLllA-4915 + AAAAAGAGGGAGAGAGA 17 5047
BCLllA-4916 + AAAAAGAGGGAGAGAGAGAG 20 5048
BCLllA-4917 + A A A AC ATG GGCAGGGCGAGC 20 5049
BCLllA-4918 - AAAACCCTCATCCCATC 17 5050
BCLllA-4919 - AAAAGCGAGGGGGAGAG 17 5051
BCLllA-4920 - AAACCCCAGCACTTAAGCAA 20 5052
BCLllA-4921 + AAAGAGGGAGAGAGAGAGAA 20 5053
BCLllA-4922 + AAAGGGGTGGCAGGGGT 17 5054
BCLllA-4923 + AAAGGGGTGGCAGGGGTGGG 20 5055
BCLllA-4924 + AAATAATAC AAAG ATG G CG C 20 5056
BCLllA-4925 + AAATGGCAAAAGCCCCC 17 5057
BCLllA-4926 + AACATGGGCAGGGCGAG 17 5058
BCLllA-4927 + AACATGGGCAGGGCGAGCAG 20 5059
BCLllA-4928 - AACCCCAGCACTTAAGCAAA 20 5060
BCLllA-4929 - AACCCGGCTCTCCCGAT 17 5061
BCLllA-4930 + AAGAAAGGGGTGGCAGGGGT 20 5062
BCLllA-4931 + AAGAGAGATAGAGGGAGAGA 20 5063
BCLllA-4932 + AAGAGGGAGAGAGAGAG 17 5064
BCLllA-4933 + AAGATGGCG CAGGGAAG 17 5065
BCLllA-4934 - AAGCAAAAGCGAGGGGGAGA 20 5066
BCLllA-4935 + AAG CCAATG GCCAGTG C 17 5067
BCLllA-4936 + AAGCCAATGGCCAGTGCGGG 20 5068
BCLllA-4937 - AATAATAATTATTAATAATC 20 5069 BCLllA-4938 + AATAATACAAAGATGGCGCA 20 5070
BCLllA-4939 - AATAATTATTAATAATC 17 5071
BCLllA-4940 + AATAATTATTATTACTATTA 20 5072
BCLllA-4941 + AATACAAAG ATG G CG C A 17 5073
BCLllA-4942 + AATGGCCAGTGCGGGGA 17 5074
BCLllA-4943 + AATTATTATTACTATTA 17 5075
BCLllA-4944 + AATTCCCGTTTGCTTAAGTG 20 5076
BCLllA-4945 + ACAAAGATGGCGCAGGGAAG 20 5077
BCLllA-4946 + ACAAGCCAATGGCCAGT 17 5078
BCLllA-4947 + ACAAGCCAATGG CCAGTG CG 20 5079
BCLllA-4948 + ACACACAAAACATGGGCAGG 20 5080
BCLllA-4949 + ACACACATCAGGGGCTGGAC 20 5081
BCLllA-4950 + ACAGAGACACACAAAAC 17 5082
BCLllA-4951 + ACATGGGCAGGGCGAGC 17 5083
BCLllA-4952 + ACATGGTGGGCTGCGGG 17 5084
BCLllA-4953 + ACCAATGGACACACATC 17 5085
BCLllA-4954 - ACCCC AG C ACTTAAG CAAAC 20 5086
BCLllA-4955 - ACCTCCGAGAGTCGAGGTAA 20 5087
BCLllA-4956 - ACGAGAAAAACCTCCGAGAG 20 5088
BCLllA-4957 + ACGCCAGACGCGGCCCC 17 5089
BCLllA-4958 + ACGCCAGACGCGGCCCCCGG 20 5090
BCLllA-4959 + ACGCGGCCCCCGGGGGAGGG 20 5091
BCLllA-4960 + ACGGCAATGGTTCCAGA 17 5092
BCLllA-4961 + ACGTCAGGAGTCTGGATGGA 20 5093
BCLllA-4962 - A CTAG A AG C A A A AG CG A 17 5094
BCLllA-4963 + ACTATTATTGGGTTACTTAC 20 5095
BCLllA-4964 - ACTCCTGACGTTCAAGTTCG 20 5096
BCLllA-4965 - A CTG ATG A AG ATATTTTCTC 20 5097
BCLllA-4966 + ACTTGAACGTCAGGAGT 17 5098
BCLllA-4967 - ACTTGAACTTGCAGCTC 17 5099
BCLllA-4968 - AGAAAAACCTCCGAGAG 17 5100
BCLllA-4969 + AGAAAGGGGTGGCAGGG 17 5101
BCLllA-4970 + AGAAGAAAGGGGTGGCAGGG 20 5102
BCLllA-4971 + AGAAGAGAGATAGAGGGAGA 20 5103
BCLllA-4972 - AGAAGCAAAAGCGAGGGGGA 20 5104
BCLllA-4973 + AGAAGGGGAGGAGGGAA 17 5105
BCLllA-4974 + AGACGCGGCCCCCGGGG 17 5106
BCLllA-4975 + AGAGAAGAAAGGGGTGG 17 5107
BCLllA-4976 + AGAGAAGAGAGATAGAGGGA 20 5108
BCLllA-4977 + AGAGAAGGGGAGGAGGG 17 5109
BCLllA-4978 + AGAGAAGGGGAGGAGGGAAG 20 5110
BCLllA-4979 + AGAGACACACAAAACATGGG 20 5111 BCLllA-4980 + AGAGAGAAGAGAGATAG 17 5112
BCLllA-4981 + AGAGAGAAGAGAGATAGAGG 20 5113
BCLllA-4982 + AGAGAGAGAAGAGAGATAGA 20 5114
BCLllA-4983 + AGAGAGAGAGAAGAGAGATA 20 5115
BCLllA-4984 + AGAGAGATAGAGGGAGA 17 5116
BCLllA-4985 + AGAGATAGAGGGAGAGA 17 5117
BCLllA-4986 + AGAGCCGGGTTAGAAAG 17 5118
BCLllA-4987 + AGAGGGAGAGAGAGAGA 17 5119
BCLllA-4988 - AGAGTCCGCGTGTGTGG 17 5120
BCLllA-4989 + AGATAGAGGGAGAGAGA 17 5121
BCLllA-4990 - AG C A A A AG CGAGGGGGA 17 5122
BCLllA-4991 - AGCAAAAGCGAGGGGGAGAG 20 5123
BCLllA-4992 + AGCAGGAGAGAAGGGGAGGA 20 5124
BCLllA-4993 + AGCCAATGGCCAGTGCG 17 5125
BCLllA-4994 + AGCCAATGGCCAGTGCGGGG 20 5126
BCLllA-4995 + AGGACAAGCCAATGGCCAGT 20 5127
BCLllA-4996 - AGGACTAGAAGCAAAAGCGA 20 5128
BCLllA-4997 + AGGAGAGAAGGGGAGGA 17 5129
BCLllA-4998 + AGGAGAGAAGGGGAGGAGGG 20 5130
BCLllA-4999 + AGGGAGAGAGAGAGAGAGAG 20 5131
BCLllA-5000 + AGGGCGAGCAGGAGAGA 17 5132
BCLllA-5001 + AGGGGAAGCTCACACCA 17 5133
BCLllA-5002 + AGGGGCGGGCCGAGGGG 17 5134
BCLllA-5003 + AG G G G CTG G AC ATG AAA 17 5135
BCLllA-5004 + AGGGGGAGGTGCGGGGC 17 5136
BCLllA-5005 + AGGGGTGGCAGGGGTGG 17 5137
BCLllA-5006 + AGGGGTGGGAGGAAAGG 17 5138
BCLllA-5007 + AGGGGTGGGAGGAAAGGGTG 20 5139
BCLllA-5008 - AGGTAAAAGAGATAAAG 17 5140
BCLllA-5009 - AGTCCGCGTGTGTGGGG 17 5141
BCLllA-5010 - AGTCGAGGTAAAAGAGATAA 20 5142
BCLllA-5011 + AGTGCGGGGAGGGGGAGGTG 20 5143
BCLllA-5012 + ATAATACAAAGATGGCG 17 5144
BCLllA-5013 - ATA ATC A CGAGAGCGCG 17 5145
BCLllA-5014 + ATACACGGCAATGGTTCCAG 20 5146
BCLllA-5015 + ATAGAGGGAGAGAGAGA 17 5147
BCLllA-5016 + ATC AG G G G CTG G AC ATG AAA 20 5148
BCLllA-5017 + ATCGGGAGAGCCGGGTTAGA 20 5149
BCLllA-5018 + ATCTCTTTTACCTCGACTCT 20 5150
BCLllA-5019 + ATGGCCAGTGCGGGGAG 17 5151
BCLllA-5020 + ATGGGCAGGGCGAGCAG 17 5152
BCLllA-5021 + ATG GTTC C AG ATG G G AT 17 5153 BCLllA-5022 + ATTATTGGGTTACTTAC 17 5154
BCLllA-5023 - ATTATTTCTAATTTATT 17 5155
BCLllA-5024 + ATTCCCGTTTGCTTAAGTGC 20 5156
BCLllA-5025 - A l 1 1 I AGAG I CCGCG I G I G I 20 5157
BCLllA-5026 - A l l l l I AAA I 1 1 1 I CAC 17 5158
BCLllA-5027 - A 1 1 1 1 1 CACGAGAAAAACC 1 20 5159
BCLllA-5028 + CAAAACATGGGCAGGGCGAG 20 5160
BCLllA-5029 - CAAAAGCGAGGGGGAGA 17 5161
BCLllA-5030 + CAAGCCAATGGCCAGTG 17 5162
BCLllA-5031 + CAATG G AC ACAC ATC AGG G G 20 5163
BCLllA-5032 + CAATGGCCAGTGCGGGG 17 5164
BCLllA-5033 + CAATGGCCAGTGCGGGGAGG 20 5165
BCLllA-5034 + CAATG GTTCC AG ATGG G 17 5166
BCLllA-5035 + CACAAAACATGGGCAGG 17 5167
BCLllA-5036 + CACACCAATGGACACACATC 20 5168
BCLllA-5037 + CACACGCGGACTCTAAA 17 5169
BCLllA-5038 + CACATCAGGGGCTGGAC 17 5170
BCLllA-5039 + CACCAATGGACACACAT 17 5171
BCLllA-5040 + CACGGCAATGGTTCCAG 17 5172
BCLllA-5041 - CA 1 A 1 AAGA 1 A 1 1 1 I C I 20 5173
BCLllA-5042 - CACTTG AACTTG CAG CT 17 5174
BCLllA-5043 - CACTTG AACTTG CAG CTC AG 20 5175
BCLllA-5044 - CAG G ACTAG A AG C A A A A 17 5176
BCLllA-5045 - CAGGACTAGAAGCAAAAGCG 20 5177
BCLllA-5046 + CAGGAGAGAAGGGGAGG 17 5178
BCLllA-5047 + CAGGGAAGATGAATTGT 17 5179
BCLllA-5048 + CAGGGCGAGCAGGAGAG 17 5180
BCLllA-5049 + CAGGGCGAGCAGGAGAGAAG 20 5181
BCLllA-5050 + CAGGGGTGGGAGGAAAGGGT 20 5182
BCLllA-5051 + CAGTGCGGGGAGGGGGAGGT 20 5183
BCLllA-5052 - CA I GCA I 1 1 1 I AAA I 1 1 1 I C 20 5184
BCLllA-5053 + CATGGGCAGGGCGAGCAGGA 20 5185
BCLllA-5054 - CATTTTAGAGTCCGCGTGTG 20 5186
BCLllA-5055 + CCAATGGCCAGTGCGGG 17 5187
BCLllA-5056 + CCAATGGCCAGTGCGGGGAG 20 5188
BCLllA-5057 + CCACACACGCGGACTCTAAA 20 5189
BCLllA-5058 + CCAGACGCGGCCCCCGG 17 5190
BCLllA-5059 + CCAGACGCGGCCCCCGGGGG 20 5191
BCLllA-5060 - CCAGCACTTAAGCAAAC 17 5192
BCLllA-5061 - CCATTG CCGTGTATG CACTT 20 5193
BCLllA-5062 - CCCAGCACTTAAGCAAA 17 5194
BCLllA-5063 - CCCCAGCACTTAAGCAA 17 5195 BCLllA-5064 + CCCCGGGGGAGGGGCGGGCC 20 5196
BCLllA-5065 - CCCCTCGGCCCGCCCCTCCC 20 5197
BCLllA-5066 + CCCGGGGGAGGGGCGGG 17 5198
BCLllA-5067 + CCCGGGGGAGGGGCGGGCCG 20 5199
BCLllA-5068 + CCCGTTTGCTTAAGTGC 17 5200
BCLllA-5069 - CCCTCGGCCCGCCCCTCCCC 20 5201
BCLllA-5070 + CCCTGCTCCCCCCCACACAC 20 5202
BCLllA-5071 + CCGAGGGGAGGGGGCGC 17 5203
BCLllA-5072 - CCG C ACTTG AACTTG CAG CT 20 5204
BCLllA-5073 + CCGCGGCGGTGGCGTGG 17 5205
BCLllA-5074 + CCGGGGGAGGGGCGGGCCGA 20 5206
BCLllA-5075 - CCTCGGCCCGCCCCTCCCCC 20 5207
BCLllA-5076 - CCTGACGTTCAAGTTCG 17 5208
BCLllA-5077 + CCTGAGCTGCAAGTTCAAGT 20 5209
BCLllA-5078 - CCTGATGTGTGTCCATTGGT 20 5210
BCLllA-5079 + CGAACTTGAACGTCAGGAGT 20 5211
BCLllA-5080 + CGAGACATGGTGGGCTG 17 5212
BCLllA-5081 + CGAGCAGGAGAGAAGGG 17 5213
BCLllA-5082 + CGAGCAGGAGAGAAGGGGAG 20 5214
BCLllA-5083 - CGAGGTAAAAGAGATAA 17 5215
BCLllA-5084 - CGAGGTAAAAGAGATAAAGG 20 5216
BCLllA-5085 - CG CACTTG AACTTG CAG CTC 20 5217
BCLllA-5086 + CGCAGGGAAGATGAATT 17 5218
BCLllA-5087 + CGCCAGACGCGGCCCCC 17 5219
BCLllA-5088 + CGCCGCGGCGGTGGCGTGGC 20 5220
BCLllA-5089 + CGCGGCGGTGGCGTGGC 17 5221
BCLllA-5090 + CGCGGCGGTGGCGTGGCCGG 20 5222
BCLllA-5091 + CGGACGCCAGACGCGGCCCC 20 5223
BCLllA-5092 + CG G C A ATG GTTC CAG ATG G G 20 5224
BCLllA-5093 + CGGCCCCCGGGGGAGGG 17 5225
BCLllA-5094 - CGGCCCGCCCCTCCCCC 17 5226
BCLllA-5095 + CG G CG AG AC ATG GTG G G CTG 20 5227
BCLllA-5096 + CGGCGGCGGCGGCGGCG 17 5228
BCLllA-5097 + CGGCGGCGGCGGCGGCGGCG 20 5229
BCLllA-5098 + CGGCGGTGGCGTGGCCGGGA 20 5230
BCLllA-5099 + CGGGCCGAGGGGAGGGGGCG 20 5231
BCLllA-5100 + CGGGCTCACCAGTGGCCGCA 20 5232
BCLllA-5101 + CGGGGAGGGGGAGGTGCGGG 20 5233
BCLllA-5102 + CGGGGGAGGGGCGGGCC 17 5234
BCLllA-5103 + CGGGGGAGGGGCGGGCCGAG 20 5235
BCLllA-5104 + CGGTGGCGTGGCCGGGA 17 5236
BCLllA-5105 + CGGTGGCGTGGCCGGGAGAG 20 5237 BCLllA-5106 - CTAG AAG CAAAAG CG AG 17 5238
BCLllA-5107 - CTAG AAG C AAAAG CG AG GG G 20 5239
BCLllA-5108 - CTCCTGACGTTCAAGTTCGC 20 5240
BCLllA-5109 - CTCGGCCCGCCCCTCCC 17 5241
BCLllA-5110 + CTCTTTTACCTCGACTC 17 5242
BCLllA-5111 - CTGACGTTCAAGTTCGC 17 5243
BCLllA-5112 + CTTGAACGTCAGGAGTCTGG 20 5244
BCLllA-5113 - CTTG AACTTG C AG CTC A 17 5245
BCLllA-5114 + CTTGCTTGCGGCGAGACATG 20 5246
BCLllA-5115 - TAATAATTATTAATAATCAC 20 5247
BCLllA-5116 + TAATACA AAG ATGG CG C 17 5248
BCLllA-5117 - TAATTATTAATAATCAC 17 5249
BCLllA-5118 + TACACGGCAATGGTTCCAGA 20 5250
BCLllA-5119 + TAGAAAGAAGGAGACTC 17 5251
BCLllA-5120 - TAG AAG CAAAAG CGAGG 17 5252
BCLllA-5121 - TAGAGTCCGCGTGTGTG 17 5253
BCLllA-5122 - TAGAGTCCGCGTGTGTGGGG 20 5254
BCLllA-5123 + TATCTCTTTTACCTCGACTC 20 5255
BCLllA-5124 + TATTATTGGGTTACTTACGC 20 5256
BCLllA-5125 + TATTGG GTTACTTACG C 17 5257
BCLllA-5126 + TCACACCAATGGACACACAT 20 5258
BCLllA-5127 - TCACGAGAAAAACCTCC 17 5259
BCLllA-5128 + TCAGGAGTCTGGATGGA 17 5260
BCLllA-5129 - TCATTTTAGAGTCCGCGTGT 20 5261
BCLllA-5130 + TCCCGTTTGCTTAAGTG 17 5262
BCLllA-5131 - TCCGAGAGTCGAGGTAA 17 5263
BCLllA-5132 - TCCGCGTGTGTGGGGGGGAG 20 5264
BCLllA-5133 - TCGAGGTAAAAGAGATA 17 5265
BCLllA-5134 - TCGAGGTAAAAGAGATAAAG 20 5266
BCLllA-5135 - TCGGCCCGCCCCTCCCC 17 5267
BCLllA-5136 - TCTAACCCGGCTCTCCCGAT 20 5268
BCLllA-5137 + TCTCGGAGGTTTTTCTC 17 5269
BCLllA-5138 + TCTTTTACCTCGACTCT 17 5270
BCLllA-5139 + TGACATCCAAAATAAAT 17 5271
BCLllA-5140 - 1 A 1 AAGA 1 A 1 1 1 I C I 17 5272
BCLllA-5141 - I GCA I 1 1 1 I AAA I 1 1 1 I CAC 20 5273
BCLllA-5142 + TGCGGGGAGGGGGAGGT 17 5274
BCLllA-5143 + TGCTCCCCCCCACACAC 17 5275
BCLllA-5144 + TGGACACACATCAGGGG 17 5276
BCLllA-5145 + TGGACAGAGACACACAAAAC 20 5277
BCLllA-5146 + TGGCAGGGGTGGGAGGA 17 5278
BCLllA-5147 + TGGCCAGTGCGGGGAGG 17 5279 BCLllA-5148 + TGGCCGGGAGAGAAGAA 17 5280
BCLllA-5149 + TGGCGCAGGGAAGATGAATT 20 5281
BCLllA-5150 + TGGCGTGGCCGGGAGAG 17 5282
BCLllA-5151 + TGGGAGGAAAGGGTGGG 17 5283
BCLllA-5152 + TGGGGTTTGCCTTGCTTGCG 20 5284
BCLllA-5153 - TGTATTATTTCTAATTTATT 20 5285
BCLllA-5154 - TTAATAATCACGAGAGCGCG 20 5286
BCLllA-5155 + TTAGAAAGAAGGAGACTCCA 20 5287
BCLllA-5156 - TTAGAGTCCGCGTGTGT 17 5288
BCLllA-5157 - TTAGAGTCCGCGTGTGTGGG 20 5289
BCLllA-5158 - TTG AACTTG C AG CTC AG 17 5290
BCLllA-5159 - TTG CCGTGTATG CACTT 17 5291
BCLllA-5160 - TTGGATGTCAAAAGGCACTG 20 5292
BCLllA-5161 - TTTAGAGTCCGCGTGTG 17 5293
BCLllA-5162 - TTTAGAGTCCGCGTGTGTGG 20 5294
BCLllA-5163 - TTTCACGAGAAAAACCT 17 5295
BCLllA-5164 - TTTTAGAGTCCGCGTGT 17 5296
BCLllA-5165 - TTTTAGAGTCCGCGTGTGTG 20 5297
BCLllA-5166 - TTTTCACGAGAAAAACCTCC 20 5298
BCLllA-5167 + TTTTGACATCCAAAATAAAT 20 5299
Table 11 provides exemplary targeting domains for knocking down expression of the BCL11A gene. The targeting domains are between 500bp upstream and 500bp downstream of transcription start site. It is contemplated herein that the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule to cause a steric block at the target region, e.g., between 500bp upstream and 500bp downstream of transcription start site to block transcription resulting in the repression of the BCL11A gene. Alternatively, any of the targeting domains in the table can be used with a N. meningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 11
Figure imgf000265_0001
Table 12A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 12A
Figure imgf000266_0001
BCLllA-5346 - ACCAUGUCUCGCCGCAAGCA 20 5332
BCLllA-5347 + GAGCUCCAUGUGCAGAACGA 20 5333
BCLllA-5348 - UCACAGAUAAACUUCUGCAC 20 5334
BCLllA-5349 + CGUCAUCCUCUGGCGUGACC 20 5335
BCLllA-5350 - GGAGCUCUAAUCCCCACGCC 20 5336
BCLllA-5351 - UCCCGUGGAGGUUGGCAUCC 20 5337
BCLllA-5352 + AUUCCCGUUUGCU UAAGUGC 20 5338
BCLllA-5353 + CCCCCAAUGGGAAGUUCAUC 20 5339
BCLllA-5354 + GCUCCCAACGGGCCGUGGUC 20 5340
BCLllA-5355 + UUUCAUCUCGAUUGGUGAAG 20 5341
BCLllA-5356 - UGUUUAUCAACGUCAUCUAG 20 5342
BCLllA-5357 + AGAGCUCCAUGUGCAGAACG 20 5343
BCLllA-5358 - G A A A A A AG C A U C C A A U C C CG 20 5344
BCLllA-5359 + GCGAGACAUGGUGGGCUGCG 20 5345
BCLllA-5360 - CAGAUAAACUUCUGCACUGG 20 5346
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 5347
BCLllA-5362 + CUGCACUCAUCCCAGGCGUG 20 5348
BCLllA-5363 - UGAACCAGACCACGGCCCGU 20 5349
BCLllA-5364 - GCAUCCAAUCCCGUGGAGGU 20 5350
BCLllA-5365 + UGCUUGCGGCGAGACAUGGU 20 5351
BCLllA-5366 + UCAAGAGGCUCGGCUGUGGU 20 5352
BCLllA-5367 - AUCAUGACCUCCUCACCUGU 20 5353
Table 12B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 12B
Figure imgf000267_0001
BCLllA-5373 + U UCAUCAUCUGUAAGAA 17 5359
BCLllA-5374 - CGUUGGGAGCUCCAGAA 17 5360
BCLllA-5375 - UCCCCUCGUUCUGCACA 17 5361
BCLllA-5376 - GAUGAUGAACCAGACCA 17 5362
BCLllA-5377 + CUGGAUGCCAACCUCCA 17 5363
BCLllA-5378 - C AG G U AAA U G AG A AG C A 17 5364
BCLllA-5379 - UAAACUUCUGCACUGGA 17 5365
BCLllA-5380 + UUCAUCUCGAUUGGUGA 17 5366
BCLllA-5381 + CAU U UG U AG AAG AAAU A 17 5367
BCLllA-5382 - AGGAAUUUGCCCCAAAC 17 5368
BCLllA-5383 - CC AG C ACU U AAG CAAAC 17 5369
BCLllA-5384 + CUUCUGGAGCUCCCAAC 17 5370
BCLllA-5385 + CAUCUGGCACUGCCCAC 17 5371
BCLllA-5386 + UGGAUGCCAACCUCCAC 17 5372
BCLllA-5387 - CAGAUAAACUUCUGCAC 17 5373
BCLllA-5388 + UAUUCUGCACUCAUCCC 17 5374
BCLllA-5389 - CGUGGAGGUUGGCAUCC 17 5375
BCLllA-5390 - AAACAGGAACACAUAGC 17 5376
BCLllA-5391 - UGCAGAAUAUGCCCCGC 17 5377
BCLllA-5392 + AUGGUGGGCUGCGGGGC 17 5378
BCLllA-5393 + ACU UACAAAUACCCUGC 17 5379
BCLllA-5394 + UGUACAUGUGUAGCUGC 17 5380
BCLllA-5395 + GAGACAUGGUGGGCUGC 17 5381
BCLllA-5396 - GUGUUGUAUUAUUUUGC 17 5382
BCLllA-5397 + CCAAUGGGAAGUUCAUC 17 5383
BCLllA-5398 + AGGUCAUGAUCCCCUUC 17 5384
BCLllA-5399 + GUAAGAAUGGCUUCAAG 17 5385
BCLllA-5400 - GUUGGGAGCUCCAGAAG 17 5386
BCLllA-5401 + CAGCU UUUUCUAAGCAG 17 5387
BCLllA-5402 + UCCAUGUGCAGAACGAG 17 5388
BCLllA-2671 + CAGAACGAGGGGAGGAG 17 5389
BCLllA-5403 - AAACUUCUGCACUGGAG 17 5390
BCLllA-5404 + GCUCCAUGUGCAGAACG 17 5391
BCLllA-5405 - AAAAGCAUCCAAUCCCG 17 5392
BCLllA-5406 + CUUACAAAUACCCUGCG 17 5393
BCLllA-5407 + AUUGGUGAAGGGGAAGG 17 5394
BCLllA-5408 + ACUGCCCACAGGUGAGG 17 5395
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 5396
BCLllA-5409 + UGCGGGGCGGGCGGCGG 17 5397
BCLllA-5410 + GGCUGCGGGGCGGGCGG 17 5398
BCLllA-5411 + GUGGGCUGCGGGGCGGG 17 5399
BCLllA-5412 + AUGUGCAGAACGAGGGG 17 5400 BCLllA-5413 + CAUGGUGGGCUGCGGGG 17 5401
BCLllA-5414 + CUUGCGGCGAGACAUGG 17 5402
BCLllA-5415 - AUAAACUUCUGCACUGG 17 5403
BCLllA-5416 - AGCAUCCAAUCCCGUGG 17 5404
BCLllA-5417 - GAUGAACUUCCCAUUGG 17 5405
BCLllA-5418 - CAUGACCUCCUCACCUG 17 5406
BCLllA-5419 + AACUUACAAAUACCCUG 17 5407
BCLllA-5420 - CUGCUUAGAAAAAGCUG 17 5408
BCLllA-5421 + U UCAAGAGGCUCGGCUG 17 5409
BCLllA-5422 + CGAGACAUGGUGGGCUG 17 5410
BCLllA-5423 + CACUCAUCCCAGGCGUG 17 5411
BCLllA-5424 + GGCACUGCCCACAGGUG 17 5412
BCLllA-5425 - AGAUGAACUUCCCAUUG 17 5413
BCLllA-5426 + GGGGUUUGCCUUGCUUG 17 5414
BCLllA-5427 + CUAUGUGUUCCUGUUUG 17 5415
BCLllA-5428 + UAAGAAUGUCCCCCAAU 17 5416
BCLllA-5429 - CCAGAUGAACUUCCCAU 17 5417
BCLllA-5430 + GCCAACCUCCACGGGAU 17 5418
BCLllA-5431 + AUUAUUAUUACUAUUAU 17 5419
BCLllA-5432 - CUCUAAUCCCCACGCCU 17 5420
BCLllA-5433 + AAUGGCUUCAAGAGGCU 17 5421
BCLllA-5434 + GUACAUGUGUAGCUGCU 17 5422
BCLllA-5435 - ACCAGACCACGGCCCGU 17 5423
BCLllA-5436 + GCACUCAUCCCAGGCGU 17 5424
BCLllA-5437 + AGAGGCUCGGCUGUGGU 17 5425
BCLllA-5438 - CAGAUGAACUUCCCAUU 17 5426
BCLllA-5439 + UUAUUAUUACUAUUAUU 17 5427
BCLllA-5440 - CCAGACCACGGCCCGUU 17 5428
BCLllA-5441 + UGCUAUGUGUUCCUGUU 17 5429
BCLllA-5442 + GCUAUGUGUUCCUGU UU 17 5430
BCLllA-5443 - AACCCCAGCACU UAAGCAAA 20 5431
BCLllA-5444 + AAAAUAAGAAUGUCCCCCAA 20 5432
BCLllA-5445 - C ACAA ACG G AAAC AAU G CAA 20 5433
BCLllA-5446 + UGGUUCAUCAUCUGUAAGAA 20 5434
BCLllA-5447 - GCCCGUUGGGAGCUCCAGAA 20 5435
BCLllA-5448 - UCCUCCCCUCGUUCUGCACA 20 5436
BCLllA-5449 - ACAGAUGAUGAACCAGACCA 20 5437
BCLllA-5450 + GACCUGGAUGCCAACCUCCA 20 5438
BCLllA-5451 - UAGCAGGUAAAUGAGAAGCA 20 5439
BCLllA-5452 - AGUGCAGAAUAUGCCCCGCA 20 5440
BCLllA-5453 - GGCCCGUUGGGAGCUCCAGA 20 5441
BCLllA-5454 + AUCUCGAUUGGUGAAGGGGA 20 5442 BCLllA-5455 - AGAUAAACUUCUGCACUGGA 20 5443
BCLllA-5456 + UUUUUCAUCUCGAUUGGUGA 20 5444
BCLllA-5457 - UAGAGGAAUUUGCCCCAAAC 20 5445
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 5446
BCLllA-5459 + CCCCU UCUGGAGCUCCCAAC 20 5447
BCLllA-5460 + GUUCAUCUGGCACUGCCCAC 20 5448
BCLllA-5461 + ACCUGGAUGCCAACCUCCAC 20 5449
BCLllA-5462 + GCAUAUUCUGCACUCAUCCC 20 5450
BCLllA-5463 - CCCAAACAGGAACACAUAGC 20 5451
BCLllA-5464 - GAGUGCAGAAUAUGCCCCGC 20 5452
BCLllA-5465 + GACAUGGUGGGCUGCGGGGC 20 5453
BCLllA-5466 + UCAACUUACAAAUACCCUGC 20 5454
BCLllA-5467 + AGUUGUACAUGUGUAGCUGC 20 5455
BCLllA-5468 + GGCGAGACAUGGUGGGCUGC 20 5456
BCLllA-5469 - UUGGUGUUGUAU UAUUUUGC 20 5457
BCLllA-5470 + GAUAAACAAUCGUCAUCCUC 20 5458
BCLllA-5471 + AGGAGGUCAUGAUCCCCUUC 20 5459
BCLllA-5472 + UCUGUAAGAAUGGCUUCAAG 20 5460
BCLllA-5473 - CCCGUUGGGAGCUCCAGAAG 20 5461
BCLllA-5474 - UGGCAUCCAGGUCACGCCAG 20 5462
BCLllA-5475 + CCACAG CU U U U U CU AAG CAG 20 5463
BCLllA-5476 + AGCUCCAUGUGCAGAACGAG 20 5464
BCLllA-5477 + GUGCAGAACGAGGGGAGGAG 20 5465
BCLllA-5478 - GAUAAACUUCUGCACUGGAG 20 5466
BCLllA-5479 + CUGGAGCUCCCAACGGGCCG 20 5467
BCLllA-5480 + U UCUGCACUCAUCCCAGGCG 20 5468
BCLllA-5481 + CAACUUACAAAUACCCUGCG 20 5469
BCLllA-5482 + UCGAUUGGUGAAGGGGAAGG 20 5470
BCLllA-5483 + GGCACUGCCCACAGGUGAGG 20 5471
BCLllA-5484 + UGCGGGGCGGGCGGCGGCGG 20 5472
BCLllA-5485 + GGCUGCGGGGCGGGCGGCGG 20 5473
BCLllA-5486 + GUGGGCUGCGGGGCGGGCGG 20 5474
BCLllA-5487 + AUGGUGGGCUGCGGGGCGGG 20 5475
BCLllA-5488 + UCCAUGUGCAGAACGAGGGG 20 5476
BCLllA-5489 + AGACAUGGUGGGCUGCGGGG 20 5477
BCLllA-5490 + UUGCUUGCGGCGAGACAUGG 20 5478
BCLllA-5491 - AAAAGCAUCCAAUCCCGUGG 20 5479
BCLllA-5492 - CCAGAUGAACUUCCCAU UGG 20 5480
BCLllA-5493 - GAUCAUGACCUCCUCACCUG 20 5481
BCLllA-5494 + CUCAACUUACAAAUACCCUG 20 5482
BCLllA-5495 - CCUCUGCUUAGAAAAAGCUG 20 5483
BCLllA-5496 + GGCUUCAAGAGGCUCGGCUG 20 5484 BCLllA-5497 + UCCCGUU UGCUUAAGUGCUG 20 5485
BCLllA-5498 + UCUGGCACUGCCCACAGGUG 20 5486
BCLllA-5499 - GCCAGAUGAACUUCCCAUUG 20 5487
BCLllA-5500 + GCUGGGGUUUGCCU UGCUUG 20 5488
BCLllA-5501 + CUGCUAUGUGUUCCUGUUUG 20 5489
BCLllA-5502 + AAAUAAGAAUGUCCCCCAAU 20 5490
BCLllA-5503 - GUGCCAGAUGAACUUCCCAU 20 5491
BCLllA-5504 + GAUGCUUUUU UCAUCUCGAU 20 5492
BCLllA-5505 + GAUGCCAACCUCCACGGGAU 20 5493
BCLllA-5506 - GAGCUCUAAUCCCCACGCCU 20 5494
BCLllA-5507 + AAGAAUGGCUUCAAGAGGCU 20 5495
BCLllA-5508 + GUUGUACAUGUGUAGCUGCU 20 5496
BCLllA-5509 + UUCCCGU UUGCUUAAGUGCU 20 5497
BCLllA-5510 + UCUGCACUCAUCCCAGGCGU 20 5498
BCLllA-5511 - UGCCAGAUGAACUUCCCAUU 20 5499
BCLllA-5512 - G AACCAG ACCACGG CCCG U U 20 5500
BCLllA-5513 + ACCUGCUAUGUGUUCCUGUU 20 5501
BCLllA-5514 + CCUGCUAUGUGUUCCUGUUU 20 5502
Table 12C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the able can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 12C
Figure imgf000271_0001
BCLllA-5524 + CUGGGUACUACGCCGAA 17 5512
BCLllA-5525 + UCUCCGAAGCUAAGGAA 17 5513
BCLllA-5526 + GGGGGCGUCGCCAGGAA 17 5514
BCLllA-5527 + U UGCUACCUGGCUGGAA 17 5515
BCLllA-5528 + CUGCACCUAGUCCUGAA 17 5516
BCLllA-5529 + AACCAUGCACUGGUGAA 17 5517
BCLllA-5530 + AUUUUCUCAGAACUUAA 17 5518
BCLllA-5531 + UAUUCUUAGCAGGUUAA 17 5519
BCLllA-5532 - GACGAUGGCACUGUUAA 17 5520
BCLllA-5533 + CGGUGGUGGACUAAACA 17 5521
BCLllA-5534 - GGCCGCGAUGCCCAACA 17 5522
BCLllA-5535 - UACUUAGAAAGCGAACA 17 5523
BCLllA-2969 - GCACCGGCGCAGCCACA 17 5524
BCLllA-2924 - CGAGGCCGAGGGCCACA 17 5525
BCLllA-5536 - CCCGAGUGCCUUUGACA 17 5526
BCLllA-5537 + CUUGAACUUGGCCACCA 17 5527
BCLllA-5538 - AAAAU U UG AAG CCCCCA 17 5528
BCLllA-5539 + CUGCAAUAUGAAUCCCA 17 5529
BCLllA-5540 - UAUGGAGCCUCCCGCCA 17 5530
BCLllA-5541 + CGGGUGAUGGGUGGCCA 17 5531
BCLllA-5542 + UCUCCUAGAGAAAUCCA 17 5532
BCLllA-5543 - UCCCAGCCACCUCUCCA 17 5533
BCLllA-5544 - CUCGGGGCGCAGCGGCA 17 5534
BCLllA-5545 - CGACGUCAUGCAGGGCA 17 5535
BCLllA-5546 + CUGCAUGACGUCGGGCA 17 5536
BCLllA-5547 - GACUUAGAGAGCUGGCA 17 5537
BCLllA-5548 - CUGCCCGACGUCAUGCA 17 5538
BCLllA-5549 + CUCGCUGAAGUGCUGCA 17 5539
BCLllA-5550 - AGCCAUUCACCAGUGCA 17 5540
BCLllA-5551 - CACGCACAGAACACUCA 17 5541
BCLllA-5552 + GUCGGACUUGACCGUCA 17 5542
BCLllA-5553 + ACCAACCCGCGGGGUCA 17 5543
BCLllA-5554 - AGGCCCAGCUCAAAAGA 17 5544
BCLllA-5555 - GCUUCCGGCCUGGCAGA 17 5545
BCLllA-5556 - CCUGGGGGCGGAAGAGA 17 5546
BCLllA-5557 + CUUGAUGCGCUUAGAGA 17 5547
BCLllA-5558 - GCUGACGGAGAGCGAGA 17 5548
BCLllA-5559 - GCGCAUCAAGCUCGAGA 17 5549
BCLllA-5560 - UCGGACCGCAUAGACGA 17 5550
BCLllA-5561 - ACGGUCAAGUCCGACGA 17 5551
BCLllA-5562 - CACCUGGCCGAGGCCGA 17 5552
BCLllA-5563 + GUCUCCGAAGCUAAGGA 17 5553 BCLllA-5564 + GGGGGGCGUCGCCAGGA 17 5554
BCLllA-5565 + AGGUUGGAGACAGAGGA 17 5555
BCLllA-5566 + GGGCGGAUUGCAGAGGA 17 5556
BCLllA-5567 + GGGGCUGGGAGGGAGGA 17 5557
BCLllA-5568 - CCGGGGAGCUGGACGGA 17 5558
BCLllA-5569 - GUGUGGCAGUUU UCGGA 17 5559
BCLllA-5570 + GGAUUGCAGAGGAGGGA 17 5560
BCLllA-5571 + UUGACCGGGGGCUGGGA 17 5561
BCLllA-5572 + UGGAGAGGUGGCUGGGA 17 5562
BCLllA-5573 - CCGCCCGGGGAGCUGGA 17 5563
BCLllA-5574 - GCGGCACGGGAAGUGGA 17 5564
BCLllA-5575 + GCCCAGGACCUGGUGGA 17 5565
BCLllA-5576 - CAAAUCGUCCCCCAUGA 17 5566
BCLllA-5577 + UCUGCACCUAGUCCUGA 17 5567
BCLllA-5578 - GGAGGAGGAGGAGCUGA 17 5568
BCLllA-5579 + CAAAGGCACUCGGGUGA 17 5569
BCLllA-5580 + GGCCCGGACCACUAAUA 17 5570
BCLllA-5581 + GCAGUAACCUUUGCAUA 17 5571
BCLllA-5582 - AGCGAGAGGGUGGACUA 17 5572
BCLllA-5583 + UGGAGUCUCCGAAGCUA 17 5573
BCLllA-5584 - GUUGAAUCCAAUGGCUA 17 5574
BCLllA-5585 + CACAGGUUGCACUUGUA 17 5575
BCLllA-5586 + AAUUUUCUCAGAACUUA 17 5576
BCLllA-5587 + UCGGUGGUGGACUAAAC 17 5577
BCLllA-5588 - ACCUGAUCCCGGAGAAC 17 5578
BCLllA-5589 - AGCACUCCUCGGAGAAC 17 5579
BCLllA-2979 - CACCGGCGCAGCCACAC 17 5580
BCLllA-2916 - CCGAGGCCGAGGGCCAC 17 5581
BCLllA-5590 + UGCACGCGUGGUCGCAC 17 5582
BCLllA-5591 - UCGGGGCGCAGCGGCAC 17 5583
BCLllA-5592 + CAAGAGAAACCAUGCAC 17 5584
BCLllA-5593 - GCAACCUGGUGGUGCAC 17 5585
BCLllA-5594 + GCAGCAGCUUUUUGGAC 17 5586
BCLllA-5595 + CAUGACUUGGACUUGAC 17 5587
BCLllA-5596 - ACCCGAGUGCCUUUGAC 17 5588
BCLllA-5597 - CAAAUUUCAGAGCAACC 17 5589
BCLllA-5598 - GCCAGCUCCCCGGAACC 17 5590
BCLllA-5599 + UGCGCCGGUGCACCACC 17 5591
BCLllA-5600 - GCAUAAGCGCGGCCACC 17 5592
BCLllA-5601 - CAGCGAGGCCU UCCACC 17 5593
BCLllA-5602 + GCU UCUCGCCCAGGACC 17 5594
BCLllA-5603 + AUGACUUGGACUUGACC 17 5595 BCLllA-5604 - AACCUGCUAAGAAUACC 17 5596
BCLllA-5605 + AAGGGCGGCUUGCUACC 17 5597
BCLllA-5606 - CGACCACGCGUGCACCC 17 5598
BCLllA-5607 - GAAAAU U UG AAG CCCCC 17 5599
BCLllA-5608 + CCAUCUCU UCCGCCCCC 17 5600
BCLllA-5609 - UCCUCCCUCCCAGCCCC 17 5601
BCLllA-5610 - GGAGUUCGACCUGCCCC 17 5602
BCLllA-5611 + CCUCCGUCCAGCUCCCC 17 5603
BCLllA-5612 - GGCCGCGGCUGCUCCCC 17 5604
BCLllA-5613 - AGCCCACCGCUGUCCCC 17 5605
BCLllA-5614 - GCUUCUCCACACCGCCC 17 5606
BCLllA-5615 + CCGAGGCCGACUCGCCC 17 5607
BCLllA-5616 + GCUUAUGCU UCUCGCCC 17 5608
BCLllA-5617 - AUUAGUGGUCCGGGCCC 17 5609
BCLllA-5618 - GGCGGAAGAGAUGGCCC 17 5610
BCLllA-5619 + UUGAGCUGGGCCUGCCC 17 5611
BCLllA-5620 - CUCCACCGCCAGCUCCC 17 5612
BCLllA-5621 + CCCUCCGUCCAGCUCCC 17 5613
BCLllA-5622 - UGGCCGCGGCUGCUCCC 17 5614
BCLllA-5623 - CUGCAACCAUUCCAGCC 17 5615
BCLllA-5624 - CGGCUUCGGGCUGAGCC 17 5616
BCLllA-5625 - CGCUUCUCCACACCGCC 17 5617
BCLllA-5626 - CCACCGCAUAGAGCGCC 17 5618
BCLllA-5627 + CCCGAGGCCGACUCGCC 17 5619
BCLllA-5628 + GGAGGGGGGGCGUCGCC 17 5620
BCLllA-5629 + AUAGGGCUGGGCCGGCC 17 5621
BCLllA-5630 - GAGAGAGGCUUCCGGCC 17 5622
BCLllA-5631 + UGUUGGGCAUCGCGGCC 17 5623
BCLllA-5632 + GGCCCUCGGCCUCGGCC 17 5624
BCLllA-5633 + CUGGGCCUGCCCGGGCC 17 5625
BCLllA-5634 - UAUUAGUGGUCCGGGCC 17 5626
BCLllA-5635 + GCU UCAGCUUGCUGGCC 17 5627
BCLllA-5636 + UCGGGUGAUGGGUGGCC 17 5628
BCLllA-5637 + UUUGAGCUGGGCCUGCC 17 5629
BCLllA-5638 + GGGAUCUUUGAGCUGCC 17 5630
BCLllA-5639 + GAAAGCGCCCUUCUGCC 17 5631
BCLllA-5640 + ACCAAGUCGCUGGUGCC 17 5632
BCLllA-5641 + UCUCUCGAUACUGAUCC 17 5633
BCLllA-5642 - CGACCCCAACCUGAUCC 17 5634
BCLllA-5643 + GGUGGCGCGCCGCCUCC 17 5635
BCLllA-5644 - CCGGCUACGCGGCCUCC 17 5636
BCLllA-5645 + CCUCGUCCCCGUUCUCC 17 5637 BCLllA-5646 - GGCCUUCCACCAGGUCC 17 5638
BCLllA-5647 - CCCCAUAU UAGUGGUCC 17 5639
BCLllA-5648 - UAGCAAGCCGCCCU UCC 17 5640
BCLllA-5649 + CGCUGGUGCCGGGUUCC 17 5641
BCLllA-5650 - UAGGAGACUUAGAGAGC 17 5642
BCLllA-5651 + GAAGGGGCUCAGCGAGC 17 5643
BCLllA-2886 - CACACCGCCCGGGGAGC 17 5644
BCLllA-5652 + GCCGGGUUCCGGGGAGC 17 5645
BCLllA-5653 + UCUGCCCUCU UUUGAGC 17 5646
BCLllA-5654 + CCUGGAGGCCGCGUAGC 17 5647
BCLllA-5655 + AUCCUGGUAUUCUUAGC 17 5648
BCLllA-5656 + AAGGGAUACCAACCCGC 17 5649
BCLllA-5657 - AAGUCCCCUGACCCCGC 17 5650
BCLllA-5658 + CGCCCGUGUGGCUGCGC 17 5651
BCLllA-5659 + UAUGCGGUCCGACUCGC 17 5652
BCLllA-5660 - CCACGAGAACAGCUCGC 17 5653
BCLllA-5661 - UACUCGCAGUGGCUCGC 17 5654
BCLllA-5662 + GCUGCCCACCAAGUCGC 17 5655
BCLllA-5663 - CACCGCUGUCCCCAGGC 17 5656
BCLllA-5664 + GCGCCCUUCUGCCAGGC 17 5657
BCLllA-5665 + GUGUUGGGCAUCGCGGC 17 5658
BCLllA-5666 + UAACCUUUGCAUAGGGC 17 5659
BCLllA-5667 - GUGGUCCGGGCCCGGGC 17 5660
BCLllA-5668 + CCUGCAUGACGUCGGGC 17 5661
BCLllA-5669 + UGGACUUGACCGGGGGC 17 5662
BCLllA-5670 + GCAUCGCGGCCGGGGGC 17 5663
BCLllA-5671 + U UUGCAUAGGGCUGGGC 17 5664
BCLllA-5672 + CUAGAGAAAUCCAUGGC 17 5665
BCLllA-5673 + GCGGCUUGCUACCUGGC 17 5666
BCLllA-5674 - AGACUUAGAGAGCUGGC 17 5667
BCLllA-5675 + UCCCAUGGAGAGGUGGC 17 5668
BCLllA-5676 - GACGAAGACUCGGUGGC 17 5669
BCLllA-5677 - CCUGCCCGACGUCAUGC 17 5670
BCLllA-5394 + UGUACAUGUGUAGCUGC 17 5671
BCLllA-5678 + GGACUUGAGCGCGCUGC 17 5672
BCLllA-5679 - GUCCAAAAAGCUGCUGC 17 5673
BCLllA-5680 + CACCAAGUCGCUGGUGC 17 5674
BCLllA-5681 + GUGGCGCU UCAGCUUGC 17 5675
BCLllA-5682 + CCCCGUUCUCCGGGAUC 17 5676
BCLllA-5683 + CCCUGUCAAAGGCACUC 17 5677
BCLllA-5684 - CCGGGCGAGUCGGCCUC 17 5678
BCLllA-5685 - CUGGACGGAGGGAUCUC 17 5679 BCLllA-5686 + ACACAUCUUGAGCUCUC 17 5680
BCLllA-5687 + UCCUCGUCCCCGUUCUC 17 5681
BCLllA-5688 + AUGCCCUGCAUGACGUC 17 5682
BCLllA-5689 + UACCAACCCGCGGGGUC 17 5683
BCLllA-5690 - GCCCCAUAU UAGUGGUC 17 5684
BCLllA-5691 + GGCAAAAGGCGAUUGUC 17 5685
BCLllA-5692 - CGGGUUGGUAUCCCU UC 17 5686
BCLllA-5693 - GUAUCGAGAGAGGCUUC 17 5687
BCLllA-5694 - GGGUGGACUACGGCUUC 17 5688
BCLllA-5695 + UCGCUGGUGCCGGGUUC 17 5689
BCLllA-5696 - CAGGCCCAGCUCAAAAG 17 5690
BCLllA-5697 + GUGAAGAACCUAGAAAG 17 5691
BCLllA-5698 + UUCUUAGCAGGUUAAAG 17 5692
BCLllA-3087 - CGAGGAAGAGGAAGAAG 17 5693
BCLllA-5699 + UGAUGCGCUUAGAGAAG 17 5694
BCLllA-3083 - GGAGGACGACGAGGAAG 17 5695
BCLllA-3089 - GGAAGAAGAGGAGGAAG 17 5696
BCLllA-3075 - CGGGGACGAGGAGGAAG 17 5697
BCLllA-2876 - CGCAGCGGCACGGGAAG 17 5698
BCLllA-5700 + GGUGGUGGACUAAACAG 17 5699
BCLllA-5701 + A A AG AG G U UGG AG ACAG 17 5700
BCLllA-5702 + GGCCGGCCUGGGGACAG 17 5701
BCLllA-5703 - AAAUUUGAAGCCCCCAG 17 5702
BCLllA-5704 - GGGAUCUCGGGGCGCAG 17 5703
BCLllA-5705 - AGAACGUGUACUCGCAG 17 5704
BCLllA-5706 + GGAGGGGCGGAUUGCAG 17 5705
BCLllA-5707 + CCAACCCGCGGGGUCAG 17 5706
BCLllA-5708 - AGGAUCAGUAUCGAGAG 17 5707
BCLllA-5709 - AGCUGACGGAGAGCGAG 17 5708
BCLllA-5710 + GGU UGGAGACAGAGGAG 17 5709
BCLllA-5711 + GGGCUGGGAGGGAGGAG 17 5710
BCLllA-5712 + GAUUGCAGAGGAGGGAG 17 5711
BCLllA-5713 + ACUAAACAGGGGGGGAG 17 5712
BCLllA-5714 + AUAUGAAUCCCAUGGAG 17 5713
BCLllA-5715 - AGCACGCCCCAUAUUAG 17 5714
BCLllA-5716 - CCUGAUCCCGGAGAACG 17 5715
BCLllA-3081 - GGAAGAGGAGGACGACG 17 5716
BCLllA-5717 + CGAGGAGUGCUCCGACG 17 5717
BCLllA-2837 - CCCGGAGAACGGGGACG 17 5718
BCLllA-5718 - GUGGCUCGCCGGCUACG 17 5719
BCLllA-5719 + UGACUUGGACUUGACCG 17 5720
BCLllA-5720 + GAAGGGAUACCAACCCG 17 5721 BCLllA-5721 - GAAGUCCCCUGACCCCG 17 5722
BCLllA-5722 + UUUGGACAGGCCCCCCG 17 5723
BCLllA-5723 - CUUCUCCACACCGCCCG 17 5724
BCLllA-5724 + CGAGGCCGACUCGCCCG 17 5725
BCLllA-2946 + CGCCCGGGGAGCAGCCG 17 5726
BCLllA-5725 - CCACCUGGCCGAGGCCG 17 5727
BCLllA-5726 + GUUGGGCAUCGCGGCCG 17 5728
BCLllA-5727 - GGCACUGUUAAUGGCCG 17 5729
BCLllA-5728 - GCGCGGCCACCUGGCCG 17 5730
BCLllA-5729 + CAAACUCCCGUUCUCCG 17 5731
BCLllA-5730 - CAGCGCGCUCAAGUCCG 17 5732
BCLllA-5731 + GCUGGUGCCGGGUUCCG 17 5733
BCLllA-5732 - GGCGAGAAGCAUAAGCG 17 5734
BCLllA-5733 - CAUGCAGCACU UCAGCG 17 5735
BCLllA-5734 + UGGCCUGGGUGCACGCG 17 5736
BCLllA-5735 + AGGGAUACCAACCCGCG 17 5737
BCLllA-5736 - CACGAGAACAGCUCGCG 17 5738
BCLllA-5737 + UGACGUCGGGCAGGGCG 17 5739
BCLllA-5738 - GAACAGCUCGCGGGGCG 17 5740
BCLllA-5739 - GGGCGCGGUCGUGGGCG 17 5741
BCLllA-5740 + CUCCGUGUUGGGCAUCG 17 5742
BCLllA-5741 - CGGGCGAGUCGGCCUCG 17 5743
BCLllA-5742 - ACCACGAGAACAGCUCG 17 5744
BCLllA-5743 - UGGACGGAGGGAUCUCG 17 5745
BCLllA-5744 + CCCGCGAGCUGU UCUCG 17 5746
BCLllA-5745 - CUCGCGGGGCGCGGUCG 17 5747
BCLllA-5746 + GUGGUGGACUAAACAGG 17 5748
BCLllA-5747 + CCUCGGCCUCGGCCAGG 17 5749
BCLllA-3090 - GGAAGAGGAAGAAGAGG 17 5750
BCLllA-3091 - AGAAGAGGAGGAAGAGG 17 5751
BCLllA-3088 - GGACGAGGAGGAAGAGG 17 5752
BCLllA-5748 + GAGGUUGGAGACAGAGG 17 5753
BCLllA-5749 + GGGGCGGAUUGCAGAGG 17 5754
BCLllA-5750 + UGAAUCCCAUGGAGAGG 17 5755
BCLllA-5751 + GGAGUGCUCCGACGAGG 17 5756
BCLllA-3066 - GGAGAACGGGGACGAGG 17 5757
BCLllA-3092 - AGAGGAGGAAGAGGAGG 17 5758
BCLllA-5752 + GUUGGAGACAGAGGAGG 17 5759
BCLllA-3093 - GGAGGAAGAGGAGGAGG 17 5760
BCLllA-5753 + AUUGCAGAGGAGGGAGG 17 5761
BCLllA-5754 + GGGGGCUGGGAGGGAGG 17 5762
BCLllA-5755 - CGGGCUGAGCCUGGAGG 17 5763 BCLllA-5756 - CCCGGGGAGCUGGACGG 17 5764
BCLllA-5757 + GACUUGGACUUGACCGG 17 5765
BCLllA-5758 + U UGGGCAUCGCGGCCGG 17 5766
BCLllA-5759 + CGGCCUGGGGACAGCGG 17 5767
BCLllA-5760 + U UCCGGGGAGCUGGCGG 17 5768
BCLllA-5761 + CCAGGCGCUCUAUGCGG 17 5769
BCLllA-5762 - UUGCGACGAAGACUCGG 17 5770
BCLllA-5763 - GGGCGAGUCGGCCUCGG 17 5771
BCLllA-5764 + UCCAAGUGAUGUCUCGG 17 5772
BCLllA-5765 + GGCGUCGCCAGGAAGGG 17 5773
BCLllA-5766 + UGGUGGACUAAACAGGG 17 5774
BCLllA-3076 - GACGGAGAGCGAGAGGG 17 5775
BCLllA-5767 + CGGAUUGCAGAGGAGGG 17 5776
BCLllA-5768 + UUGCAGAGGAGGGAGGG 17 5777
BCLllA-5769 + ACCGGGGGCUGGGAGGG 17 5778
BCLllA-5770 + CCGUCCAGCUCCCCGGG 17 5779
BCLllA-5771 + GAGAAAUCCAUGGCGGG 17 5780
BCLllA-5772 - GGCGAGUCGGCCUCGGG 17 5781
BCLllA-5773 + GGUGGACUAAACAGGGG 17 5782
BCLllA-5774 - U UUGAAGCCCCCAGGGG 17 5783
BCLllA-5775 + CUGGGAGGGAGGAGGGG 17 5784
BCLllA-5776 + UGCAGAGGAGGGAGGGG 17 5785
BCLllA-5777 - CAUAGAGCGCCUGGGGG 17 5786
BCLllA-5778 - AGCCCCCAGGGGUGGGG 17 5787
BCLllA-5779 + GGCACUCGGGUGAUGGG 17 5788
BCLllA-5780 + CUUGACCGGGGGCUGGG 17 5789
BCLllA-5781 + AACAGGGGGGGAGUGGG 17 5790
BCLllA-5782 + GGUACUACGCCGAAUGG 17 5791
BCLllA-5783 + CCUAGAGAAAUCCAUGG 17 5792
BCLllA-5784 + GGACUUGACCGUCAUGG 17 5793
BCLllA-5785 - AUUUCAGAGCAACCUGG 17 5794
BCLllA-5786 + UCUCGCCCAGGACCUGG 17 5795
BCLllA-5787 - CUUCGGGCUGAGCCUGG 17 5796
BCLllA-5788 - CCGCAUAGAGCGCCUGG 17 5797
BCLllA-5789 + AUCUUUGAGCUGCCUGG 17 5798
BCLllA-5790 + GGGUUCCGGGGAGCUGG 17 5799
BCLllA-5791 - AGCGGCACGGGAAGUGG 17 5800
BCLllA-5792 - CGCGCUCAAGUCCG UGG 17 5801
BCLllA-5793 + GCGAGCUGUUCUCGUGG 17 5802
BCLllA-5794 + GGCGCUCUAUGCGGUGG 17 5803
BCLllA-5795 + AAGUGAUGUCUCGGUGG 17 5804
BCLllA-5796 - CGGCACCAGCGACU UGG 17 5805 BCLllA-5797 + GGGUACUACGCCGAAUG 17 5806
BCLllA-5798 + CGGACUUGACCGUCAUG 17 5807
BCLllA-5799 + GCAUGUGCGUCUUCAUG 17 5808
BCLllA-5800 + CCCGGACCACUAAUAUG 17 5809
BCLllA-5801 + CCCCCAGGCGCUCUAUG 17 5810
BCLllA-5802 + CAGUGCCAUCGUCUAUG 17 5811
BCLllA-5803 - GACACUUGUGAGUACUG 17 5812
BCLllA-5804 + CGUCGCAAGUGUCCCUG 17 5813
BCLllA-5805 - ACCGCAUAGAGCGCCUG 17 5814
BCLllA-5806 + AGGGCUGGGCCGGCCUG 17 5815
BCLllA-5807 + AGGGGCUCAGCGAGCUG 17 5816
BCLllA-5808 - CCUUUGACAGGGUGCUG 17 5817
BCLllA-5809 - AAGUCAUGCGAGUUCUG 17 5818
BCLllA-5810 + AGGGCUUCUCGCCCGUG 17 5819
BCLllA-5811 + CAGCUCCCCGGGCGGUG 17 5820
BCLllA-5812 + AGGCGCUCUAUGCGGUG 17 5821
BCLllA-5813 - UGAAGCCCCCAGGGGUG 17 5822
BCLllA-5814 - AGAGAGCUCAAGAUGUG 17 5823
BCLllA-5815 + UCUCCGGGAUCAGGUUG 17 5824
BCLllA-5816 + UGGGUACUACGCCGAAU 17 5825
BCLllA-5817 + GGAGGCUCCAUAGCCAU 17 5826
BCLllA-5818 - CCCAGCCACCUCUCCAU 17 5827
BCLllA-5819 + UGCAGUAACCUU UGCAU 17 5828
BCLllA-5820 + UCGGACUUGACCGUCAU 17 5829
BCLllA-5821 + AAAGGCACUCGGGUGAU 17 5830
BCLllA-5822 + GCCCGGACCACUAAUAU 17 5831
BCLllA-5823 + GU UCUCGCUCUUGAACU 17 5832
BCLllA-5824 + ACCCUGUCAAAGGCACU 17 5833
BCLllA-5825 - ACCACCGAGACAUCACU 17 5834
BCLllA-5826 - CACUUGCGACGAAGACU 17 5835
BCLllA-5827 - ACCCGGCACCAGCGACU 17 5836
BCLllA-5828 - GGUAUCCCUUCAGGACU 17 5837
BCLllA-5829 + GCAGAACUCGCAUGACU 17 5838
BCLllA-5830 + AGUGUCCCUGUGGCCCU 17 5839
BCLllA-5831 - CACCGCAUAGAGCGCCU 17 5840
BCLllA-5832 + UAGGGCUGGGCCGGCCU 17 5841
BCLllA-5833 + CCUGUGGCCCUCGGCCU 17 5842
BCLllA-5834 - CCCGGGCGAGUCGGCCU 17 5843
BCLllA-5835 + CUUCAGCUUGCUGGCCU 17 5844
BCLllA-5836 - CUCGUCGGAGCACUCCU 17 5845
BCLllA-5837 - GCCUUCCACCAGGUCCU 17 5846
BCLllA-5838 + AAGGGGCUCAGCGAGCU 17 5847 BCLllA-5839 + CUGCCCUCUU UUGAGCU 17 5848
BCLllA-5840 + AACCUUUGCAUAGGGCU 17 5849
BCLllA-5841 + GGACUUGACCGGGGGCU 17 5850
BCLllA-5842 + CCCAUGGAGAGGUGGCU 17 5851
BCLllA-5434 + GUACAUGUGUAGCUGCU 17 5852
BCLllA-5843 - UCCAAAAAGCUGCUGCU 17 5853
BCLllA-5844 - GCUGGACGGAGGGAUCU 17 5854
BCLllA-5845 + CACAUCUUGAGCUCUCU 17 5855
BCLllA-5846 - CCGCCAUGGAUUUCUCU 17 5856
BCLllA-5847 + GGGUCCAAGUGAUGUCU 17 5857
BCLllA-5848 - GUCUCCAACCUCU UUCU 17 5858
BCLllA-5849 - CUCGGUGGCCGGCGAGU 17 5859
BCLllA-5850 - CUGCUCCCCGGGCGAGU 17 5860
BCLllA-5851 + CUAAACAGGGGGGGAGU 17 5861
BCLllA-5852 + CAUGCCCUGCAUGACGU 17 5862
BCLllA-5853 - GGCGCGGUCGUGGGCGU 17 5863
BCLllA-5854 - GCCUUU UGCCUCCUCGU 17 5864
BCLllA-5855 + GGUGGAGAGACCGUCGU 17 5865
BCLllA-5856 - UCGCGGGGCGCGGUCGU 17 5866
BCLllA-5857 + GU UCUCCGGGAUCAGGU 17 5867
BCLllA-5858 + AGAACCUAGAAAGAGGU 17 5868
BCLllA-5859 + GGCCUGGGGACAGCGGU 17 5869
BCLllA-5860 + CAGGCGCUCUAUGCGGU 17 5870
BCLllA-5861 - CCCCUGACCCCGCGGGU 17 5871
BCLllA-5862 - U UGAAGCCCCCAGGGGU 17 5872
BCLllA-5863 - GGCACCAGCGACU UGGU 17 5873
BCLllA-5864 - ACACUUGUGAGUACUGU 17 5874
BCLllA-5865 + GUACACGUUCUCCGUGU 17 5875
BCLllA-5866 + GCACAGGUUGCACUUGU 17 5876
BCLllA-5867 - CUUCACACACCCCCAU U 17 5877
BCLllA-5868 - GAUCCCU UCCUUAGCUU 17 5878
BCLllA-5869 - AGGGUGGACUACGGCUU 17 5879
BCLllA-5870 + UUCUCCGGGAUCAGGU U 17 5880
BCLllA-5871 + UACACGUUCUCCGUGUU 17 5881
BCLllA-5872 + GCCCAGCAGCAGCUUU U 17 5882
BCLllA-5873 - AGAUGUGUGGCAGUUU U 17 5883
BCLllA-5874 + UGCUCCGACGAGGAGGCAAA 20 5884
BCLllA-5875 + GGUAUUCUUAGCAGGUUAAA 20 5885
BCLllA-5876 - GGUGCUGCGGUUGAAUCCAA 20 5886
BCLllA-5877 - GCCGGCCCAGCCCUAUGCAA 20 5887
BCLllA-5878 + CAACCGCAGCACCCUG UCAA 20 5888
BCLllA-5879 - AGGCUUCCGGCCUGGCAGAA 20 5889 BCLllA-5880 + AGCUUGAUGCGCUUAGAGAA 20 5890
BCLllA-5881 - CCCAACCUGAUCCCGGAGAA 20 5891
BCLllA-5882 - UCGGAGCACUCCUCGGAGAA 20 5892
BCLllA-5883 + UCUCUGGGUACUACGCCGAA 20 5893
BCLllA-5884 + GAGUCUCCGAAGCUAAGGAA 20 5894
BCLllA-5885 + AGGGGGGGCGUCGCCAGGAA 20 5895
BCLllA-5886 + GGCUUGCUACCUGGCUGGAA 20 5896
BCLllA-5887 + AUUCUGCACCUAGUCCUGAA 20 5897
BCLllA-5888 + AGAAACCAUGCACUGGUGAA 20 5898
BCLllA-5889 + CAAAUUUUCUCAGAACU UAA 20 5899
BCLllA-5890 + UGGUAUUCUUAGCAGGUUAA 20 5900
BCLllA-5891 - AUAGACGAUGGCACUGU UAA 20 5901
BCLllA-5892 + UCUCGGUGGUGGACUAAACA 20 5902
BCLllA-5893 - CCCGGCCGCGAUGCCCAACA 20 5903
BCLllA-5894 - AUCUACUUAGAAAGCGAACA 20 5904
BCLllA-5895 - GGUGCACCGGCGCAGCCACA 20 5905
BCLllA-3377 - GGCCGAGGCCGAGGGCCACA 20 5906
BCLllA-5896 - UCACCCGAGUGCCU UUGACA 20 5907
BCLllA-5897 + GCUCUUGAACUUGGCCACCA 20 5908
BCLllA-5898 - G AG AAAAU U UG AAG CCCCCA 20 5909
BCLllA-5899 + UGUCUGCAAUAUGAAUCCCA 20 5910
BCLllA-5900 - GGCUAUGGAGCCUCCCGCCA 20 5911
BCLllA-5901 + ACUCGGGUGAUGGGUGGCCA 20 5912
BCLllA-5902 + AAGUCUCCUAGAGAAAUCCA 20 5913
BCLllA-5903 - CCUUCCCAGCCACCUCUCCA 20 5914
BCLllA-5904 - GAUCUCGGGGCGCAGCGGCA 20 5915
BCLllA-5905 - GCCCGACGUCAUGCAGGGCA 20 5916
BCLllA-5906 + GCCCUGCAUGACGUCGGGCA 20 5917
BCLllA-5907 - GGAGACUUAGAGAGCUGGCA 20 5918
BCLllA-5908 - GCCCUGCCCGACGUCAUGCA 20 5919
BCLllA-5909 + GGCCUCGCUGAAGUGCUGCA 20 5920
BCLllA-5910 - AACAGCCAUUCACCAGUGCA 20 5921
BCLllA-5911 - CAACACGCACAGAACACUCA 20 5922
BCLllA-5912 + GUCGUCGGACUUGACCGUCA 20 5923
BCLllA-5913 + GAUACCAACCCGCGGGGUCA 20 5924
BCLllA-5914 - GGCAGGCCCAGCUCAAAAGA 20 5925
BCLllA-5915 - GAGGCUUCCGGCCUGGCAGA 20 5926
BCLllA-5916 - GCGCCUGGGGGCGGAAGAGA 20 5927
BCLllA-5917 + GAGCUUGAUGCGCUUAGAGA 20 5928
BCLllA-5918 - GGAGCUGACGGAGAGCGAGA 20 5929
BCLllA-5919 - UAAGCGCAUCAAGCUCGAGA 20 5930
BCLllA-5920 - GAGUCGGACCGCAUAGACGA 20 5931 BCLllA-5921 - AUGACGGUCAAGUCCGACGA 20 5932
BCLllA-5922 - GGCCACCUGGCCGAGGCCGA 20 5933
BCLllA-5923 + GGAGUCUCCGAAGCUAAGGA 20 5934
BCLllA-5924 + GAGGGGGGGCGUCGCCAGGA 20 5935
BCLllA-5925 + AAGAGGUUGGAGACAGAGGA 20 5936
BCLllA-5926 + GAGGGGCGGAUUGCAGAGGA 20 5937
BCLllA-5927 + CCGGGGGCUGGGAGGGAGGA 20 5938
BCLllA-5928 - CGCCCGGGGAGCUGGACGGA 20 5939
BCLllA-5929 - GAUGUGUGGCAGUU UUCGGA 20 5940
BCLllA-5930 + GGCGGAUUGCAGAGGAGGGA 20 5941
BCLllA-5931 + GACUUGACCGGGGGCUGGGA 20 5942
BCLllA-5932 + CCAUGGAGAGGUGGCUGGGA 20 5943
BCLllA-5933 - ACACCGCCCGGGGAGCUGGA 20 5944
BCLllA-5934 - GCAGCGGCACGGGAAGUGGA 20 5945
BCLllA-5935 + CUCGCCCAGGACCUGGUGGA 20 5946
BCLllA-5936 - GCACAAAUCGUCCCCCAUGA 20 5947
BCLllA-5937 + CAUUCUGCACCUAGUCCUGA 20 5948
BCLllA-5938 - AGAGGAGGAGGAGGAGCUGA 20 5949
BCLllA-5939 + UGUCAAAGGCACUCGGGUGA 20 5950
BCLllA-5940 + CCGGGCCCGGACCACUAAUA 20 5951
BCLllA-5941 + GU UGCAGUAACCUUUGCAUA 20 5952
BCLllA-5942 - GAGAGCGAGAGGGUGGACUA 20 5953
BCLllA-5943 + GUCUGGAGUCUCCGAAGCUA 20 5954
BCLllA-5944 - GCGGU UGAAUCCAAUGGCUA 20 5955
BCLllA-5945 + UCGCACAGGUUGCACUUGUA 20 5956
BCLllA-5946 + UCAAAUUUUCUCAGAACUUA 20 5957
BCLllA-5947 + GUCUCGGUGGUGGACUAAAC 20 5958
BCLllA-5948 - CCAACCUGAUCCCGGAGAAC 20 5959
BCLllA-5949 - CGGAGCACUCCUCGGAGAAC 20 5960
BCLllA-5950 - GUGCACCGGCGCAGCCACAC 20 5961
BCLllA-5951 - UGGCCGAGGCCGAGGGCCAC 20 5962
BCLllA-5952 + GGGUGCACGCGUGGUCGCAC 20 5963
BCLllA-5953 - AUCUCGGGGCGCAGCGGCAC 20 5964
BCLllA-5954 + U UGCAAGAGAAACCAUGCAC 20 5965
BCLllA-5955 - AGAGCAACCUGGUGGUGCAC 20 5966
BCLllA-5956 + CCAGCAGCAGCUUUUUGGAC 20 5967
BCLllA-5957 + UCGCAUGACU UGGACU UGAC 20 5968
BCLllA-5958 - AUCACCCGAGUGCCUUUGAC 20 5969
BCLllA-5959 - GUUCAAAUUUCAGAGCAACC 20 5970
BCLllA-5960 - ACCGCCAGCUCCCCGGAACC 20 5971
BCLllA-5961 + GGCUGCGCCGGUGCACCACC 20 5972
BCLllA-5962 - GAAGCAUAAGCGCGGCCACC 20 5973 BCLllA-5963 - CUUCAGCGAGGCCUUCCACC 20 5974
BCLllA-5964 + UAUGCUUCUCGCCCAGGACC 20 5975
BCLllA-5965 + CGCAUGACUUGGACUUGACC 20 5976
BCLllA-5966 - U UUAACCUGCUAAGAAUACC 20 5977
BCLllA-5967 + AGGAAGGGCGGCUUGCUACC 20 5978
BCLllA-5968 - GUGCGACCACGCGUGCACCC 20 5979
BCLllA-5969 - UGAGAAAAUUUGAAGCCCCC 20 5980
BCLllA-5970 + GGGCCAUCUCUUCCGCCCCC 20 5981
BCLllA-5971 - CCCUCCUCCCUCCCAGCCCC 20 5982
BCLllA-5972 - GAAGGAGUUCGACCUGCCCC 20 5983
BCLllA-5973 + AUCCCUCCGUCCAGCUCCCC 20 5984
BCLllA-5974 - AAUGGCCGCGGCUGCUCCCC 20 5985
BCLllA-5975 - UCUAGCCCACCGCUGUCCCC 20 5986
BCLllA-5976 - UGCGCUUCUCCACACCGCCC 20 5987
BCLllA-5977 + CCCCCGAGGCCGACUCGCCC 20 5988
BCLllA-5978 + CGCGCUUAUGCUUCUCGCCC 20 5989
BCLllA-5979 - CAUAUUAGUGGUCCGGGCCC 20 5990
BCLllA-5980 - GGGGGCGGAAGAGAUGGCCC 20 5991
BCLllA-5981 + CUUUUGAGCUGGGCCUGCCC 20 5992
BCLllA-5982 - UCUCUCCACCGCCAGCUCCC 20 5993
BCLllA-5983 + GAUCCCUCCGUCCAGCUCCC 20 5994
BCLllA-5984 - UAAUGGCCGCGGCUGCUCCC 20 5995
BCLllA-5985 - U UACUGCAACCAUUCCAGCC 20 5996
BCLllA-5986 - CUACGGCU UCGGGCUGAGCC 20 5997
BCLllA-5987 - U UGCGCUUCUCCACACCGCC 20 5998
BCLllA-5988 - CCCCCACCGCAUAGAGCGCC 20 5999
BCLllA-5989 + CCCCCCGAGGCCGACUCGCC 20 6000
BCLllA-5990 + GAGGGAGGGGGGGCGUCGCC 20 6001
BCLllA-5991 + UGCAUAGGGCUGGGCCGGCC 20 6002
BCLllA-5992 - AUCGAGAGAGGCUUCCGGCC 20 6003
BCLllA-5993 + CCGUGUUGGGCAUCGCGGCC 20 6004
BCLllA-5994 + UGUGGCCCUCGGCCUCGGCC 20 6005
BCLllA-5995 + GAGCUGGGCCUGCCCGGGCC 20 6006
BCLllA-5996 - CCAUAUUAGUGGUCCGGGCC 20 6007
BCLllA-5997 + GGCGCUUCAGCUUGCUGGCC 20 6008
BCLllA-5998 + CACUCGGGUGAUGGGUGGCC 20 6009
BCLllA-5999 + UCUUUUGAGCUGGGCCUGCC 20 6010
BCLllA-6000 + GAAGGGAUCUUUGAGCUGCC 20 6011
BCLllA-6001 + GUGGAAAGCGCCCUUCUGCC 20 6012
BCLllA-6002 + CCCACCAAGUCGCUGGUGCC 20 6013
BCLllA-6003 + GCCUCUCUCGAUACUGAUCC 20 6014
BCLllA-6004 - GAACGACCCCAACCUGAUCC 20 6015 BCLllA-6005 + CGUGGUGGCGCGCCGCCUCC 20 6016
BCLllA-6006 - UCGCCGGCUACGCGGCCUCC 20 6017
BCLllA-6007 + CCUCCUCGUCCCCGUUCUCC 20 6018
BCLllA-6008 - CGAGGCCUUCCACCAGGUCC 20 6019
BCLllA-6009 - ACGCCCCAUAUUAGUGGUCC 20 6020
BCLllA-6010 - AGGUAGCAAGCCGCCCUUCC 20 6021
BCLllA-6011 + AGUCGCUGGUGCCGGGUUCC 20 6022
BCLllA-6012 - CUCUAGGAGACUUAGAGAGC 20 6023
BCLllA-6013 + AGAGAAGGGGCUCAGCGAGC 20 6024
BCLllA-6014 - CUCCACACCGCCCGGGGAGC 20 6025
BCLllA-6015 + GGUGCCGGGUUCCGGGGAGC 20 6026
BCLllA-6016 + GCGUCUGCCCUCUUUUGAGC 20 6027
BCLllA-6017 + CUGCCUGGAGGCCGCGUAGC 20 6028
BCLllA-6018 + CUGAUCCUGGUAUUCU UAGC 20 6029
BCLllA-6019 + CUGAAGGGAUACCAACCCGC 20 6030
BCLllA-6020 - CGGAAGUCCCCUGACCCCGC 20 6031
BCLllA-6021 + UCUCGCCCGUGUGGCUGCGC 20 6032
BCLllA-6022 + GUCUAUGCGGUCCGACUCGC 20 6033
BCLllA-6023 - CCACCACGAGAACAGCUCGC 20 6034
BCLllA-6024 - GUGUACUCGCAGUGGCUCGC 20 6035
BCLllA-6025 + GGCGCUGCCCACCAAGUCGC 20 6036
BCLllA-6026 - GCCCACCGCUGUCCCCAGGC 20 6037
BCLllA-6027 + AAAGCGCCCUUCUGCCAGGC 20 6038
BCLllA-6028 + UCCGUGUUGGGCAUCGCGGC 20 6039
BCLllA-6029 + CAGUAACCUUUGCAUAGGGC 20 6040
BCLllA-6030 - U UAGUGGUCCGGGCCCGGGC 20 6041
BCLllA-6031 + UGCCCUGCAUGACGUCGGGC 20 6042
BCLllA-6032 + ACUUGGACUUGACCGGGGGC 20 6043
BCLllA-6033 + UGGGCAUCGCGGCCGGGGGC 20 6044
BCLllA-6034 + ACCU UUGCAUAGGGCUGGGC 20 6045
BCLllA-6035 + CUCCUAGAGAAAUCCAUGGC 20 6046
BCLllA-6036 + AGGGCGGCUUGCUACCUGGC 20 6047
BCLllA-6037 - AGGAGACUUAGAGAGCUGGC 20 6048
BCLllA-6038 + GAAUCCCAUGGAGAGGUGGC 20 6049
BCLllA-6039 - UGCGACGAAGACUCGGUGGC 20 6050
BCLllA-6040 - CGCCCUGCCCGACGUCAUGC 20 6051
BCLllA-5467 + AGUUGUACAUGUGUAGCUGC 20 6052
BCLllA-6041 + CACGGACUUGAGCGCGCUGC 20 6053
BCLllA-6042 - CCUGUCCAAAAAGCUGCUGC 20 6054
BCLllA-6043 + GCCCACCAAGUCGCUGGUGC 20 6055
BCLllA-6044 + CAUGUGGCGCUUCAGCU UGC 20 6056
BCLllA-6045 + CGUCCCCGUUCUCCGGGAUC 20 6057 BCLllA-6046 + GCACCCUGUCAAAGGCACUC 20 6058
BCLllA-6047 - UCCCCGGGCGAGUCGGCCUC 20 6059
BCLllA-6048 - GAGCUGGACGGAGGGAUCUC 20 6060
BCLllA-6049 + GCCACACAUCUUGAGCUCUC 20 6061
BCLllA-6050 + UCCUCCUCGUCCCCGUUCUC 20 6062
BCLllA-6051 + ACCAUGCCCUGCAUGACGUC 20 6063
BCLllA-6052 + GGAUACCAACCCGCGGGGUC 20 6064
BCLllA-6053 - CACGCCCCAUAU UAGUGGUC 20 6065
BCLllA-6054 + GGAGGCAAAAGGCGAUUGUC 20 6066
BCLllA-6055 - CCGCGGGUUGGUAUCCCUUC 20 6067
BCLllA-6056 - UCAGUAUCGAGAGAGGCUUC 20 6068
BCLllA-6057 - AGAGGGUGGACUACGGCUUC 20 6069
BCLllA-6058 + AAGUCGCUGGUGCCGGGUUC 20 6070
BCLllA-6059 - GGGCAGGCCCAGCUCAAAAG 20 6071
BCLllA-6060 + UGUGUGAAGAACCUAGAAAG 20 6072
BCLllA-6061 + GUAUUCUUAGCAGGUUAAAG 20 6073
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 6074
BCLllA-6062 + GCUUGAUGCGCUUAGAGAAG 20 6075
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 6076
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 6077
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 6078
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 6079
BCLllA-6063 + CUCGGUGGUGGACUAAACAG 20 6080
BCLllA-6064 + UAGAAAGAGGUUGGAGACAG 20 6081
BCLllA-6065 + CUGGGCCGGCCUGGGGACAG 20 6082
BCLllA-6066 - AGAAAAUUUGAAGCCCCCAG 20 6083
BCLllA-6067 - GGAGGGAUCUCGGGGCGCAG 20 6084
BCLllA-6068 - CGGAGAACGUGUACUCGCAG 20 6085
BCLllA-6069 + GGAGGAGGGGCGGAUUGCAG 20 6086
BCLllA-6070 + AUACCAACCCGCGGGGUCAG 20 6087
BCLllA-6071 - ACCAGGAUCAGUAUCGAGAG 20 6088
BCLllA-6072 - AGGAGCUGACGGAGAGCGAG 20 6089
BCLllA-6073 + AG AGG U UGG AGACAGAGGAG 20 6090
BCLllA-6074 + CGGGGGCUGGGAGGGAGGAG 20 6091
BCLllA-6075 + GCGGAUUGCAGAGGAGGGAG 20 6092
BCLllA-6076 + UGGACUAAACAGGGGGGGAG 20 6093
BCLllA-6077 + GCAAUAUGAAUCCCAUGGAG 20 6094
BCLllA-6078 - GGGAGCACGCCCCAUAU UAG 20 6095
BCLllA-6079 - CAACCUGAUCCCGGAGAACG 20 6096
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 6097
BCLllA-6080 + CUCCGAGGAGUGCUCCGACG 20 6098
BCLllA-6081 - GAUCCCGGAGAACGGGGACG 20 6099 BCLllA-6082 - GCAGUGGCUCGCCGGCUACG 20 6100
BCLllA-6083 + GCAUGACUUGGACUUGACCG 20 6101
BCLllA-6084 + CCUGAAGGGAUACCAACCCG 20 6102
BCLllA-6085 - ACGGAAGUCCCCUGACCCCG 20 6103
BCLllA-6086 + CUUUUUGGACAGGCCCCCCG 20 6104
BCLllA-6087 - GCGCUUCUCCACACCGCCCG 20 6105
BCLllA-6088 + CCCCGAGGCCGACUCGCCCG 20 6106
BCLllA-6089 + ACUCGCCCGGGGAGCAGCCG 20 6107
BCLllA-6090 - CGGCCACCUGGCCGAGGCCG 20 6108
BCLllA-6091 + CGUGUUGGGCAUCGCGGCCG 20 6109
BCLllA-6092 - GAUGGCACUGUUAAUGGCCG 20 6110
BCLllA-6093 - UAAGCGCGGCCACCUGGCCG 20 6111
BCLllA-6094 + GCGCAAACUCCCGUUCUCCG 20 6112
BCLllA-6095 - CAG CAG CG CG C U CA AG U CCG 20 6113
BCLllA-6096 + GUCGCUGGUGCCGGGU UCCG 20 6114
BCLllA-6097 - CUGGGCGAGAAGCAUAAGCG 20 6115
BCLllA-6098 - CUCCAUGCAGCACUUCAGCG 20 6116
BCLllA-6099 + UGCUGGCCUGGGUGCACGCG 20 6117
BCLllA-6100 + UGAAGGGAUACCAACCCGCG 20 6118
BCLllA-6101 - CACCACGAGAACAGCUCGCG 20 6119
BCLllA-6102 + GCAUGACGUCGGGCAGGGCG 20 6120
BCLllA-6103 - CGAGAACAGCUCGCGGGGCG 20 6121
BCLllA-6104 - GCGGGGCGCGGUCGUGGGCG 20 6122
BCLllA-6105 + GUUCUCCGUGUUGGGCAUCG 20 6123
BCLllA-6106 - CCCCGGGCGAGUCGGCCUCG 20 6124
BCLllA-6107 - GCCACCACGAGAACAGCUCG 20 6125
BCLllA-6108 - AGCUGGACGGAGGGAUCUCG 20 6126
BCLllA-6109 + CGCCCCGCGAGCUGUUCUCG 20 6127
BCLllA-6110 - CAGCUCGCGGGGCGCGGUCG 20 6128
BCLllA-6111 + UCGGUGGUGGACUAAACAGG 20 6129
BCLllA-6112 + GGCCCUCGGCCUCGGCCAGG 20 6130
BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 6131
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 6132
BCLllA-3445 - CGGGGACGAGGAGGAAGAGG 20 6133
BCLllA-6113 + AAAGAGGUUGGAGACAGAGG 20 6134
BCLllA-6114 + GGAGGGGCGGAUUGCAGAGG 20 6135
BCLllA-6115 + AUAUGAAUCCCAUGGAGAGG 20 6136
BCLllA-6116 + CGAGGAGUGCUCCGACGAGG 20 6137
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 6138
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 6139
BCLllA-6117 + GAGGUUGGAGACAGAGGAGG 20 6140
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 6141 BCLllA-6118 + CGGAUUGCAGAGGAGGGAGG 20 6142
BCLllA-6119 + ACCGGGGGCUGGGAGGGAGG 20 6143
BCLllA-6120 - CUUCGGGCUGAGCCUGGAGG 20 6144
BCLllA-6121 - CCGCCCGGGGAGCUGGACGG 20 6145
BCLllA-6122 + CAUGACUUGGACUUGACCGG 20 6146
BCLllA-6123 + GUGUUGGGCAUCGCGGCCGG 20 6147
BCLllA-6124 + GGCCGGCCUGGGGACAGCGG 20 6148
BCLllA-6125 + GGGUUCCGGGGAGCUGGCGG 20 6149
BCLllA-6126 + CCCCCAGGCGCUCUAUGCGG 20 6150
BCLllA-6127 - CACUUGCGACGAAGACUCGG 20 6151
BCLllA-6128 - CCCGGGCGAGUCGGCCUCGG 20 6152
BCLllA-6129 + GGGUCCAAGUGAUGUCUCGG 20 6153
BCLllA-6130 + GGGGGCGUCGCCAGGAAGGG 20 6154
BCLllA-6131 + CGGUGGUGGACUAAACAGGG 20 6155
BCLllA-6132 - GCUGACGGAGAGCGAGAGGG 20 6156
BCLllA-6133 + GGGCGGAUUGCAGAGGAGGG 20 6157
BCLllA-6134 + GGAUUGCAGAGGAGGGAGGG 20 6158
BCLllA-6135 + UUGACCGGGGGCUGGGAGGG 20 6159
BCLllA-6136 + CCUCCGUCCAGCUCCCCGGG 20 6160
BCLllA-6137 + CUAGAGAAAUCCAUGGCGGG 20 6161
BCLllA-6138 - CCGGGCGAGUCGGCCUCGGG 20 6162
BCLllA-6139 + GGUGGUGGACUAAACAGGGG 20 6163
BCLllA-6140 - AAAUUUGAAGCCCCCAGGGG 20 6164
BCLllA-6141 + GGGCUGGGAGGGAGGAGGGG 20 6165
BCLllA-6142 + GAUUGCAGAGGAGGGAGGGG 20 6166
BCLllA-6143 - CCGCAUAGAGCGCCUGGGGG 20 6167
BCLllA-6144 - UGAAGCCCCCAGGGGUGGGG 20 6168
BCLllA-6145 + AAAGGCACUCGGGUGAUGGG 20 6169
BCLllA-6146 + GGACUUGACCGGGGGCUGGG 20 6170
BCLllA-6147 + CUAAACAGGGGGGGAGUGGG 20 6171
BCLllA-6148 + CUGGGUACUACGCCGAAUGG 20 6172
BCLllA-6149 + UCUCCUAGAGAAAUCCAUGG 20 6173
BCLllA-6150 + GUCGGACUUGACCGUCAUGG 20 6174
BCLllA-6151 - CAAAUUUCAGAGCAACCUGG 20 6175
BCLllA-6152 + GCUUCUCGCCCAGGACCUGG 20 6176
BCLllA-6153 - CGGCUUCGGGCUGAGCCUGG 20 6177
BCLllA-6154 - CCACCGCAUAGAGCGCCUGG 20 6178
BCLllA-6155 + GGGAUCUUUGAGCUGCCUGG 20 6179
BCLllA-6156 + GCCGGGU UCCGGGGAGCUGG 20 6180
BCLllA-6157 - CGCAGCGGCACGGGAAGUGG 20 6181
BCLllA-6158 - CAGCGCGCUCAAGUCCGUGG 20 6182
BCLllA-6159 + CCCGCGAGCUGUUCUCGUGG 20 6183 BCLllA-6160 + CCAGGCGCUCUAUGCGGUGG 20 6184
BCLllA-6161 + UCCAAGUGAUGUCUCGGUGG 20 6185
BCLllA-6162 - ACCCGGCACCAGCGACUUGG 20 6186
BCLllA-6163 + UCUGGGUACUACGCCGAAUG 20 6187
BCLllA-6164 + CGUCGGACU UGACCGUCAUG 20 6188
BCLllA-6165 + UGUGCAUGUGCGUCUUCAUG 20 6189
BCLllA-6166 + GGGCCCGGACCACUAAUAUG 20 6190
BCLllA-6167 + CCGCCCCCAGGCGCUCUAUG 20 6191
BCLllA-6168 + UAACAGUGCCAUCGUCUAUG 20 6192
BCLllA-6169 - AGCGACACUUGUGAGUACUG 20 6193
BCLllA-6170 + CUUCGUCGCAAGUGUCCCUG 20 6194
BCLllA-6171 - CCCACCGCAUAGAGCGCCUG 20 6195
BCLllA-6172 + CAUAGGGCUGGGCCGGCCUG 20 6196
BCLllA-6173 + AGAAGGGGCUCAGCGAGCUG 20 6197
BCLllA-6174 - GUGCCU UUGACAGGGUGCUG 20 6198
BCLllA-6175 - UCCAAGUCAUGCGAGUUCUG 20 6199
BCLllA-6176 + UGUAGGGCUUCUCGCCCGUG 20 6200
BCLllA-6177 + GUCCAGCUCCCCGGGCGGUG 20 6201
BCLllA-6178 + CCCAGGCGCUCUAUGCGGUG 20 6202
BCLllA-6179 - AUUUGAAGCCCCCAGGGGUG 20 6203
BCLllA-6180 - CCCAGAGAGCUCAAGAUGUG 20 6204
BCLllA-6181 + CGUUCUCCGGGAUCAGGUUG 20 6205
BCLllA-6182 + CUCUGGGUACUACGCCGAAU 20 6206
BCLllA-6183 + GCGGGAGGCUCCAUAGCCAU 20 6207
BCLllA-6184 - CUUCCCAGCCACCUCUCCAU 20 6208
BCLllA-6185 + GGUUGCAGUAACCUUUGCAU 20 6209
BCLllA-6186 + UCGUCGGACUUGACCGUCAU 20 6210
BCLllA-6187 + GUCAAAGGCACUCGGGUGAU 20 6211
BCLllA-6188 + CGGGCCCGGACCACUAAUAU 20 6212
BCLllA-6189 + GUCGUUCUCGCUCUUGAACU 20 6213
BCLllA-6190 + AGCACCCUGUCAAAGGCACU 20 6214
BCLllA-6191 - UCCACCACCGAGACAUCACU 20 6215
BCLllA-6192 - GGACACUUGCGACGAAGACU 20 6216
BCLllA-6193 - GGAACCCGGCACCAGCGACU 20 6217
BCLllA-6194 - GU UGGUAUCCCUUCAGGACU 20 6218
BCLllA-6195 + GCCGCAGAACUCGCAUGACU 20 6219
BCLllA-6196 + GCAAGUGUCCCUGUGGCCCU 20 6220
BCLllA-6197 - CCCCACCGCAUAGAGCGCCU 20 6221
BCLllA-6198 + GCAUAGGGCUGGGCCGGCCU 20 6222
BCLllA-6199 + GUCCCUGUGGCCCUCGGCCU 20 6223
BCLllA-6200 - CUCCCCGGGCGAGUCGGCCU 20 6224
BCLllA-6201 + GCGCUUCAGCUUGCUGGCCU 20 6225 BCLllA-6202 - CUCCUCGUCGGAGCACUCCU 20 6226
BCLllA-6203 - GAGGCCU UCCACCAGGUCCU 20 6227
BCLllA-6204 + GAGAAGGGGCUCAGCGAGCU 20 6228
BCLllA-6205 + CGUCUGCCCUCUUUUGAGCU 20 6229
BCLllA-6206 + AGUAACCUUUGCAUAGGGCU 20 6230
BCLllA-6207 + CUUGGACUUGACCGGGGGCU 20 6231
BCLllA-6208 + AAUCCCAUGGAGAGGUGGCU 20 6232
BCLllA-5508 + GUUGUACAUGUGUAGCUGCU 20 6233
BCLllA-6209 - CUGUCCAAAAAGCUGCUGCU 20 6234
BCLllA-6210 - GGAGCUGGACGGAGGGAUCU 20 6235
BCLllA-6211 + CCACACAUCUUGAGCUCUCU 20 6236
BCLllA-6212 - CUCCCGCCAUGGAU UUCUCU 20 6237
BCLllA-6213 + UGGGGGUCCAAGUGAUGUCU 20 6238
BCLllA-6214 - UCUGUCUCCAACCUCUUUCU 20 6239
BCLllA-6215 - AGACUCGGUGGCCGGCGAGU 20 6240
BCLllA-6216 - CGGCUGCUCCCCGGGCGAGU 20 6241
BCLllA-6217 + GGACUAAACAGGGGGGGAGU 20 6242
BCLllA-6218 + CACCAUGCCCUGCAUGACGU 20 6243
BCLllA-6219 - CGGGGCGCGGUCGUGGGCGU 20 6244
BCLllA-6220 - AUCGCCU UUUGCCUCCUCGU 20 6245
BCLllA-6221 + GGCGGUGGAGAGACCGUCGU 20 6246
BCLllA-6222 - AGCUCGCGGGGCGCGGUCGU 20 6247
BCLllA-6223 + CCCGUUCUCCGGGAUCAGGU 20 6248
BCLllA-6224 + UGAAGAACCUAGAAAGAGGU 20 6249
BCLllA-6225 + GCCGGCCUGGGGACAGCGGU 20 6250
BCLllA-6226 + CCCCAGGCGCUCUAUGCGGU 20 6251
BCLllA-6227 - AGUCCCCUGACCCCGCGGGU 20 6252
BCLllA-6228 - AAUUUGAAGCCCCCAGGGGU 20 6253
BCLllA-6229 - CCCGGCACCAGCGACUUGGU 20 6254
BCLllA-6230 - GCGACACU UGUGAGUACUGU 20 6255
BCLllA-6231 + CGAGUACACGUUCUCCGUGU 20 6256
BCLllA-6232 + GUCGCACAGGU UGCACU UGU 20 6257
BCLllA-6233 - GUUCUUCACACACCCCCAUU 20 6258
BCLllA-6234 - AAAGAUCCCUUCCUUAGCUU 20 6259
BCLllA-6235 - GAGAGGGUGGACUACGGCUU 20 6260
BCLllA-6236 + CCGUUCUCCGGGAUCAGGUU 20 6261
BCLllA-6237 + GAGUACACGUUCUCCGUGUU 20 6262
BCLllA-6238 + GCUGCCCAGCAGCAGCUUUU 20 6263
BCLllA-6239 - UCAAGAUGUGUGGCAGUUUU 20 6264
Table 12D provides targeting domains for knocking out the BCLllA gene by dual targeting (e.g., dual single strand cleavages). In an embodiment, dual targeting (e.g., dual nicking) is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp. Exemplary nickase pairs including selecting a targeting domain from Group A and a second targeting domain from Group B, or including selecting a targeting domain from Group C and a second targeting domain from Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. Exemplary gRNA pairs to be used with S. pyogenes Cas9 are shown in Table 12D, e.g., BCL11A-5355 or BCL11A-5380 can be combined with BCL11 A-5321 or BCL11A-5416; or BCL11 A-5333, BCL11 A-5354, or BCL11 A-5329 can be combined with BCL11 A-5367 or BCLl lA-5341.
Table 12D
Figure imgf000290_0001
Table 13A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), have a high level of orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13A
Figure imgf000290_0002
BCLllA-6241 + GUGACCUGGAUGCCAACCUCCA 22 6266
BCLllA-6242 + CGUGACCUGGAUGCCAACCUCCA 23 6267
BCLllA-6243 + GCGUGACCUGGAUGCCAACCUCCA 24 6268
BCLllA-6244 + AUGCCAACCUCCACGGGA 18 6269
BCLllA-6245 + GAUGCCAACCUCCACGGGA 19 6270
BCLllA-6246 + GGAUGCCAACCUCCACGGGA 20 6271
BCLllA-6247 + UGGAUGCCAACCUCCACGGGA 21 6272
BCLllA-6248 + CUGGAUGCCAACCUCCACGGGA 22 6273
BCLllA-6249 + CCUGGAUGCCAACCUCCACGGGA 23 6274
BCLllA-6250 + ACCUGGAUGCCAACCUCCACGGGA 24 6275
BCLllA-6251 + GUCAUCCUCUGGCGUGAC 18 6276
BCLllA-6252 + CGUCAUCCUCUGGCGUGAC 19 6277
BCLllA-6253 + UCGUCAUCCUCUGGCGUGAC 20 6278
BCLllA-6254 + AUCGUCAUCCUCUGGCGUGAC 21 6279
BCLllA-6255 + AAUCGUCAUCCUCUGGCGUGAC 22 6280
BCLllA-6256 + CAAUCGUCAUCCUCUGGCGUGAC 23 6281
BCLllA-6257 + ACAAUCGUCAUCCUCUGGCGUGAC 24 6282
BCLllA-6258 + U UAUUGGGUUACUUACGC 18 6283
BCLllA-6259 + AUUAUUGGGUUACU UACGC 19 6284
BCLllA-6260 + UAUUAUUGGGUUACUUACGC 20 6285
BCLllA-6261 + CUAUUAUUGGGUUACUUACGC 21 6286
BCLllA-6262 + ACUAUUAUUGGGUUACUUACGC 22 6287
BCLllA-6263 + UACUAUUAUUGGGU UACUUACGC 23 6288
BCLllA-6264 + UUACUAUUAUUGGGUUACUUACGC 24 6289
BCLllA-6265 + UCCCGU UUGCUUAAGUGC 18 6290
BCLllA-6266 + UUCCCGU UUGCUUAAGUGC 19 6291
BCLllA-5352 + AUUCCCGUUUGCU UAAGUGC 20 6292
BCLllA-6267 + AAUUCCCGUU UGCUUAAGUGC 21 6293
BCLllA-6268 + GAAUUCCCGU UUGCUUAAGUGC 22 6294
BCLllA-6269 + AGAAUUCCCGUUUGCU UAAGUGC 23 6295
BCLllA-6270 + GAGAAUUCCCGU UUGCUUAAGUGC 24 6296
BCLllA-6271 + UUUGUGCUCGAUAAAAAU 18 6297
BCLllA-6272 + GUUUGUGCUCGAUAAAAAU 19 6298
BCLllA-6273 + CGUUUGUGCUCGAUAAAAAU 20 6299
BCLllA-6274 + CCGUUUGUGCUCGAUAAAAAU 21 6300
BCLllA-6275 + UCCGUUUGUGCUCGAUAAAAAU 22 6301
BCLllA-6276 + U UCCGUU UGUGCUCGAUAAAAAU 23 6302
BCLllA-6277 + U UUCCGU UUGUGCUCGAUAAAAAU 24 6303
BCLllA-6278 + UGCACUCAUCCCAGGCGU 18 6304
BCLllA-6279 + CUGCACUCAUCCCAGGCGU 19 6305
BCLllA-5510 + UCUGCACUCAUCCCAGGCGU 20 6306
BCLllA-6280 + U UCUGCACUCAUCCCAGGCGU 21 6307 BCLllA-6281 + AUUCUGCACUCAUCCCAGGCGU 22 6308
BCLllA-6282 + UAUUCUGCACUCAUCCCAGGCGU 23 6309
BCLllA-6283 + AUAUUCUGCACUCAUCCCAGGCGU 24 6310
BCLllA-6284 + GUCUGGUUCAUCAUCUGU 18 6311
BCLllA-6285 + GGUCUGGUUCAUCAUCUGU 19 6312
BCLllA-6286 + UGGUCUGGUUCAUCAUCUGU 20 6313
BCLllA-6287 + GUGGUCUGGUUCAUCAUCUGU 21 6314
BCLllA-6288 + CGUGGUCUGGUUCAUCAUCUGU 22 6315
BCLllA-6289 + CCGUGGUCUGGUUCAUCAUCUGU 23 6316
BCLllA-6290 + GCCGUGGUCUGGUUCAUCAUCUGU 24 6317
BCLllA-6291 - CCGUUGGGAGCUCCAGAA 18 6318
BCLllA-6292 - CCCGUUGGGAGCUCCAGAA 19 6319
BCLllA-5447 - GCCCGUUGGGAGCUCCAGAA 20 6320
BCLllA-6293 - GGCCCGUUGGGAGCUCCAGAA 21 6321
BCLllA-6294 - CGGCCCGUUGGGAGCUCCAGAA 22 6322
BCLllA-6295 - ACGGCCCGUUGGGAGCUCCAGAA 23 6323
BCLllA-6296 - CACGGCCCGUUGGGAGCUCCAGAA 24 6324
BCLllA-6297 - GGCAUCCAGGUCACGCCA 18 6325
BCLllA-6298 - UGGCAUCCAGGUCACGCCA 19 6326
BCLllA-6299 - UUGGCAUCCAGGUCACGCCA 20 6327
BCLllA-6300 - GUUGGCAUCCAGGUCACGCCA 21 6328
BCLllA-6301 - GGUUGGCAUCCAGGUCACGCCA 22 6329
BCLllA-6302 - AGGUUGGCAUCCAGGUCACGCCA 23 6330
BCLllA-6303 - GAGGUUGGCAUCCAGGUCACGCCA 24 6331
BCLllA-6304 - AACCCCAGCACUUAAGCAAAC 21 6332
BCLllA-6305 - AAACCCCAGCACUUAAGCAAAC 22 6333
BCLllA-6306 - CAAACCCCAGCACUUAAGCAAAC 23 6334
BCLllA-6307 - GCAAACCCCAGCACUUAAGCAAAC 24 6335
BCLllA-6308 - AGCUCUAAUCCCCACGCC 18 6336
BCLllA-6309 - GAGCUCUAAUCCCCACGCC 19 6337
BCLllA-5350 - GGAGCUCUAAUCCCCACGCC 20 6338
BCLllA-6310 - UGGAGCUCUAAUCCCCACGCC 21 6339
BCLllA-6311 - AUGGAGCUCUAAUCCCCACGCC 22 6340
BCLllA-6312 - CAUGGAGCUCUAAUCCCCACGCC 23 6341
BCLllA-6313 - ACAUGGAGCUCUAAUCCCCACGCC 24 6342
BCLllA-6314 - UUUAUCAACGUCAUCUAG 18 6343
BCLllA-6315 - GUUUAUCAACGUCAUCUAG 19 6344
BCLllA-5356 - UGUUUAUCAACGUCAUCUAG 20 6345
BCLllA-6316 - UUGUUUAUCAACGUCAUCUAG 21 6346
BCLllA-6317 - AUUGUUUAUCAACGUCAUCUAG 22 6347
BCLllA-6318 - GAUUGUUUAUCAACGUCAUCUAG 23 6348
BCLllA-6319 - CGAUUGUUUAUCAACGUCAUCUAG 24 6349 BCLllA-6320 - AGUGCAGAAUAUGCCCCG 18 6350
BCLllA-6321 - GAGUGCAGAAUAUGCCCCG 19 6351
BCLllA-6322 - UGAGUGCAGAAUAUGCCCCG 20 6352
BCLllA-6323 - AUGAGUGCAGAAUAUGCCCCG 21 6353
BCLllA-6324 - GAUGAGUGCAGAAUAUGCCCCG 22 6354
BCLllA-6325 - GGAUGAGUGCAGAAUAUGCCCCG 23 6355
BCLllA-6326 - GGGAUGAGUGCAGAAUAUGCCCCG 24 6356
BCLllA-6327 - CUAAUCCCCACGCCUGGG 18 6357
BCLllA-6328 - UCUAAUCCCCACGCCUGGG 19 6358
BCLllA-6329 - CUCUAAUCCCCACGCCUGGG 20 6359
BCLllA-6330 - GCUCUAAUCCCCACGCCUGGG 21 6360
BCLllA-6331 - AGCUCUAAUCCCCACGCCUGGG 22 6361
BCLllA-6332 - GAGCUCUAAUCCCCACGCCUGGG 23 6362
BCLllA-6333 - GGAGCUCUAAUCCCCACGCCUGGG 24 6363
BCLllA-6334 - CCACGCCUGGGAUGAGUG 18 6364
BCLllA-6335 - CCCACGCCUGGGAUGAGUG 19 6365
BCLllA-6336 - CCCCACGCCUGGGAUGAGUG 20 6366
BCLllA-6337 - UCCCCACGCCUGGGAUGAGUG 21 6367
BCLllA-6338 - AUCCCCACGCCUGGGAUGAGUG 22 6368
BCLllA-6339 - AAUCCCCACGCCUGGGAUGAGUG 23 6369
BCLllA-6340 - UAAUCCCCACGCCUGGGAUGAGUG 24 6370
BCLllA-6341 - CUCUGCUUAGAAAAAGCU 18 6371
BCLllA-6342 - CCUCUGCUUAGAAAAAGCU 19 6372
BCLllA-6343 - GCCUCUGCUUAGAAAAAGCU 20 6373
BCLllA-6344 - AGCCUCUGCU UAGAAAAAGCU 21 6374
BCLllA-6345 - CAGCCUCUGCU UAGAAAAAGCU 22 6375
BCLllA-6346 - GCAGCCUCUGCU UAGAAAAAGCU 23 6376
BCLllA-6347 - GGCAGCCUCUGCU UAGAAAAAGCU 24 6377
Table 13B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13B
Figure imgf000293_0001
Strand Length NO
BCLllA-6348 + CCUGGAUGCCAACCUCCA 18 6378
BCLllA-6349 + ACCUGGAUGCCAACCUCCA 19 6379
BCLllA-5450 + GACCUGGAUGCCAACCUCCA 20 6380
BCLllA-6350 - CCCAG CAC U U AAG CAAAC 18 6381
BCLllA-6351 - CCCCAG CACU U AAG CAAAC 19 6382
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 6383
Table 13C provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13C
Figure imgf000294_0001
BCLllA-6370 + CGAUAAAAAUAAGAAUGUCCCCCA 24 6404
BCLllA-6371 + CCCCU UCUGGAGCUCCCA 18 6405
BCLllA-6372 + UCCCCUUCUGGAGCUCCCA 19 6406
BCLllA-6373 + AUCCCCUUCUGGAGCUCCCA 20 6407
BCLllA-6374 + GAUCCCCUUCUGGAGCUCCCA 21 6408
BCLllA-6375 + UGAUCCCCUUCUGGAGCUCCCA 22 6409
BCLllA-6376 + AUGAUCCCCUUCUGGAGCUCCCA 23 6410
BCLllA-6377 + CAUGAUCCCCUUCUGGAGCUCCCA 24 6411
BCLllA-6378 + UAGAGCUCCAUGUGCAGA 18 6412
BCLllA-6379 + UUAGAGCUCCAUGUGCAGA 19 6413
BCLllA-6380 + AUUAGAGCUCCAUGUGCAGA 20 6414
BCLllA-6381 + GAUUAGAGCUCCAUGUGCAGA 21 6415
BCLllA-6382 + GGAUUAGAGCUCCAUGUGCAGA 22 6416
BCLllA-6383 + GGGAUUAGAGCUCCAUGUGCAGA 23 6417
BCLllA-6384 + GGGGAUUAGAGCUCCAUGUGCAGA 24 6418
BCLllA-6385 + GCUCCAUGUGCAGAACGA 18 6419
BCLllA-6386 + AGCUCCAUGUGCAGAACGA 19 6420
BCLllA-5347 + GAGCUCCAUGUGCAGAACGA 20 6421
BCLllA-6387 + AGAGCUCCAUGUGCAGAACGA 21 6422
BCLllA-6388 + UAGAGCUCCAUGUGCAGAACGA 22 6423
BCLllA-6389 + UUAGAGCUCCAUGUGCAGAACGA 23 6424
BCLllA-6390 + AUUAGAGCUCCAUGUGCAGAACGA 24 6425
BCLllA-6391 + UUUCAUCUCGAUUGGUGA 18 6426
BCLllA-6392 + UUUUCAUCUCGAUUGGUGA 19 6427
BCLllA-5456 + UUUUUCAUCUCGAUUGGUGA 20 6428
BCLllA-6393 + UUUUUUCAUCUCGAUUGGUGA 21 6429
BCLllA-6394 + CUUUUUUCAUCUCGAU UGGUGA 22 6430
BCLllA-6395 + GCU UUUUUCAUCUCGAUUGGUGA 23 6431
BCLllA-6396 + UGCUUUUU UCAUCUCGAUUGGUGA 24 6432
BCLllA-6397 + GCAGAAGUUUAUCUGUGA 18 6433
BCLllA-6398 + UGCAGAAGUUUAUCUGUGA 19 6434
BCLllA-6399 + GUGCAGAAGUUUAUCUGUGA 20 6435
BCLllA-6400 + AGUGCAGAAGUUUAUCUGUGA 21 6436
BCLllA-6401 + CAGUGCAGAAGUUUAUCUGUGA 22 6437
BCLllA-6402 + CCAGUGCAGAAGUUUAUCUGUGA 23 6438
BCLllA-6403 + UCCAGUGCAGAAGUUUAUCUGUGA 24 6439
BCLllA-6404 + GAGCUCCAUGUGCAGAAC 18 6440
BCLllA-6405 + AGAGCUCCAUGUGCAGAAC 19 6441
BCLllA-6406 + UAGAGCUCCAUGUGCAGAAC 20 6442
BCLllA-6407 + U UAGAGCUCCAUGUGCAGAAC 21 6443
BCLllA-6408 + AUUAGAGCUCCAUGUGCAGAAC 22 6444
BCLllA-6409 + GAUUAGAGCUCCAUGUGCAGAAC 23 6445 BCLllA-6410 + GGAUUAGAGCUCCAUGUGCAGAAC 24 6446
BCLllA-6411 + UAUUAUUGGGUUACUUAC 18 6447
BCLllA-6412 + CUAUUAUUGGGUUACUUAC 19 6448
BCLllA-6413 + ACUAUUAUUGGGUUACUUAC 20 6449
BCLllA-6414 + UACUAUUAUUGGGU UACUUAC 21 6450
BCLllA-6415 + U UACUAUUAUUGGGUUACUUAC 22 6451
BCLllA-6416 + AUUACUAUUAUUGGGUUACUUAC 23 6452
BCLllA-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 6453
BCLllA-6418 + ACCUGGAUGCCAACCUCC 18 6454
BCLllA-6419 + GACCUGGAUGCCAACCUCC 19 6455
BCLllA-6420 + UGACCUGGAUGCCAACCUCC 20 6456
BCLllA-6421 + GUGACCUGGAUGCCAACCUCC 21 6457
BCLllA-6422 + CGUGACCUGGAUGCCAACCUCC 22 6458
BCLllA-6423 + GCGUGACCUGGAUGCCAACCUCC 23 6459
BCLllA-6424 + GGCGUGACCUGGAUGCCAACCUCC 24 6460
BCLllA-6425 + UCUGCACUCAUCCCAGGC 18 6461
BCLllA-6426 + U UCUGCACUCAUCCCAGGC 19 6462
BCLllA-6427 + AUUCUGCACUCAUCCCAGGC 20 6463
BCLllA-6428 + UAUUCUGCACUCAUCCCAGGC 21 6464
BCLllA-6429 + AUAUUCUGCACUCAUCCCAGGC 22 6465
BCLllA-6430 + CAUAUUCUGCACUCAUCCCAGGC 23 6466
BCLllA-6431 + GCAUAUUCUGCACUCAUCCCAGGC 24 6467
BCLllA-6432 + GAGGUCAUGAUCCCCUUC 18 6468
BCLllA-6433 + GGAGGUCAUGAUCCCCU UC 19 6469
BCLllA-5471 + AGGAGGUCAUGAUCCCCUUC 20 6470
BCLllA-6434 + GAGGAGGUCAUGAUCCCCUUC 21 6471
BCLllA-6435 + UGAGGAGGUCAUGAUCCCCUUC 22 6472
BCLllA-6436 + GUGAGGAGGUCAUGAUCCCCU UC 23 6473
BCLllA-6437 + GGUGAGGAGGUCAUGAUCCCCUUC 24 6474
BCLllA-6438 + AUCUGUAAGAAUGGCUUC 18 6475
BCLllA-6439 + CAUCUGUAAGAAUGGCUUC 19 6476
BCLllA-6440 + UCAUCUGUAAGAAUGGCUUC 20 6477
BCLllA-6441 + AUCAUCUGUAAGAAUGGCUUC 21 6478
BCLllA-6442 + CAUCAUCUGUAAGAAUGGCUUC 22 6479
BCLllA-6443 + UCAUCAUCUGUAAGAAUGGCUUC 23 6480
BCLllA-6444 + UUCAUCAUCUGUAAGAAUGGCUUC 24 6481
BCLllA-6445 + UCAUCUCGAU UGGUGAAG 18 6482
BCLllA-6446 + UUCAUCUCGAUUGGUGAAG 19 6483
BCLllA-5355 + UUUCAUCUCGAUUGGUGAAG 20 6484
BCLllA-6447 + UUUUCAUCUCGAUUGGUGAAG 21 6485
BCLllA-6448 + UUUUUCAUCUCGAUUGGUGAAG 22 6486
BCLllA-6449 + UUUUUUCAUCUCGAUUGGUGAAG 23 6487 BCLllA-6450 + CUUUUUUCAUCUCGAU UGGUGAAG 24 6488
BCLllA-6451 + UCCACAGCU UUUUCUAAG 18 6489
BCLllA-6452 + AUCCACAGCUUUUUCUAAG 19 6490
BCLllA-6453 + UAUCCACAGCUUUUUCUAAG 20 6491
BCLllA-6454 + UUAUCCACAGCUUUUUCUAAG 21 6492
BCLllA-6455 + CUUAUCCACAGCUUUU UCUAAG 22 6493
BCLllA-6456 + GCUUAUCCACAGCUUU UUCUAAG 23 6494
BCLllA-6457 + GGCU UAUCCACAGCUUUUUCUAAG 24 6495
BCLllA-6458 + AUCUGGCACUGCCCACAG 18 6496
BCLllA-6459 + CAUCUGGCACUGCCCACAG 19 6497
BCLllA-6460 + UCAUCUGGCACUGCCCACAG 20 6498
BCLllA-6461 + UUCAUCUGGCACUGCCCACAG 21 6499
BCLllA-6462 + GUUCAUCUGGCACUGCCCACAG 22 6500
BCLllA-6463 + AGUUCAUCUGGCACUGCCCACAG 23 6501
BCLllA-6464 + AAGUUCAUCUGGCACUGCCCACAG 24 6502
BCLllA-6465 + CUCCAUGUGCAGAACGAG 18 6503
BCLllA-6466 + GCUCCAUGUGCAGAACGAG 19 6504
BCLllA-5476 + AGCUCCAUGUGCAGAACGAG 20 6505
BCLllA-6467 + GAGCUCCAUGUGCAGAACGAG 21 6506
BCLllA-6468 + AGAGCUCCAUGUGCAGAACGAG 22 6507
BCLllA-6469 + UAGAGCUCCAUGUGCAGAACGAG 23 6508
BCLllA-6470 + U UAGAGCUCCAUGUGCAGAACGAG 24 6509
BCLllA-6471 + UGUGCAGAACGAGGGGAG 18 6510
BCLllA-6472 + AUGUGCAGAACGAGGGGAG 19 6511
BCLllA-6473 + CAUGUGCAGAACGAGGGGAG 20 6512
BCLllA-6474 + CCAUGUGCAGAACGAGGGGAG 21 6513
BCLllA-6475 + UCCAUGUGCAGAACGAGGGGAG 22 6514
BCLllA-6476 + CUCCAUGUGCAGAACGAGGGGAG 23 6515
BCLllA-6477 + GCUCCAUGUGCAGAACGAGGGGAG 24 6516
BCLllA-6478 + AGCUCCAUGUGCAGAACG 18 6517
BCLllA-6479 + GAGCUCCAUGUGCAGAACG 19 6518
BCLllA-5357 + AGAGCUCCAUGUGCAGAACG 20 6519
BCLllA-6480 + UAGAGCUCCAUGUGCAGAACG 21 6520
BCLllA-6481 + U UAGAGCUCCAUGUGCAGAACG 22 6521
BCLllA-6482 + AUUAGAGCUCCAUGUGCAGAACG 23 6522
BCLllA-6483 + GAUUAGAGCUCCAUGUGCAGAACG 24 6523
BCLllA-6484 + CUGCACUCAUCCCAGGCG 18 6524
BCLllA-6485 + UCUGCACUCAUCCCAGGCG 19 6525
BCLllA-5480 + U UCUGCACUCAUCCCAGGCG 20 6526
BCLllA-6486 + AUUCUGCACUCAUCCCAGGCG 21 6527
BCLllA-6487 + UAUUCUGCACUCAUCCCAGGCG 22 6528
BCLllA-6488 + AUAUUCUGCACUCAUCCCAGGCG 23 6529 BCLllA-6489 + CAUAUUCUGCACUCAUCCCAGGCG 24 6530
BCLllA-6490 + GGGUUUGCCUUGCUUGCG 18 6531
BCLllA-6491 + GGGGUUUGCCUUGCUUGCG 19 6532
BCLllA-6492 + UGGGGUUUGCCUUGCUUGCG 20 6533
BCLllA-6493 + CUGGGGUUUGCCUUGCUUGCG 21 6534
BCLllA-6494 + GCUGGGGUUUGCCU UGCUUGCG 22 6535
BCLllA-6495 + UGCUGGGGUU UGCCUUGCUUGCG 23 6536
BCLllA-6496 + GUGCUGGGGUUUGCCU UGCUUGCG 24 6537
BCLllA-6497 + CCAUGUGCAGAACGAGGG 18 6538
BCLllA-6498 + UCCAUGUGCAGAACGAGGG 19 6539
BCLllA-6499 + CUCCAUGUGCAGAACGAGGG 20 6540
BCLllA-6500 + GCUCCAUGUGCAGAACGAGGG 21 6541
BCLllA-6501 + AGCUCCAUGUGCAGAACGAGGG 22 6542
BCLllA-6502 + GAGCUCCAUGUGCAGAACGAGGG 23 6543
BCLllA-6503 + AGAGCUCCAUGUGCAGAACGAGGG 24 6544
BCLllA-6504 + GACAUGGUGGGCUGCGGG 18 6545
BCLllA-6505 + AGACAUGGUGGGCUGCGGG 19 6546
BCLllA-6506 + GAGACAUGGUGGGCUGCGGG 20 6547
BCLllA-6507 + CGAGACAUGGUGGGCUGCGGG 21 6548
BCLllA-6508 + GCGAGACAUGGUGGGCUGCGGG 22 6549
BCLllA-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 6550
BCLllA-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 6551
BCLllA-6511 + CAUGUGCAGAACGAGGGG 18 6552
BCLllA-6512 + CCAUGUGCAGAACGAGGGG 19 6553
BCLllA-5488 + UCCAUGUGCAGAACGAGGGG 20 6554
BCLllA-6513 + CUCCAUGUGCAGAACGAGGGG 21 6555
BCLllA-6514 + GCUCCAUGUGCAGAACGAGGGG 22 6556
BCLllA-6515 + AGCUCCAUGUGCAGAACGAGGGG 23 6557
BCLllA-6516 + GAGCUCCAUGUGCAGAACGAGGGG 24 6558
BCLllA-6517 + CAAGAGGCUCGGCUGUGG 18 6559
BCLllA-6518 + UCAAGAGGCUCGGCUGUGG 19 6560
BCLllA-6519 + UUCAAGAGGCUCGGCUGUGG 20 6561
BCLllA-6520 + CUUCAAGAGGCUCGGCUGUGG 21 6562
BCLllA-6521 + GCU UCAAGAGGCUCGGCUGUGG 22 6563
BCLllA-6522 + GGCU UCAAGAGGCUCGGCUGUGG 23 6564
BCLllA-6523 + UGGCUUCAAGAGGCUCGGCUGUGG 24 6565
BCLllA-6524 + UGCUUGCGGCGAGACAUG 18 6566
BCLllA-6525 + U UGCUUGCGGCGAGACAUG 19 6567
BCLllA-6526 + CUUGCUUGCGGCGAGACAUG 20 6568
BCLllA-6527 + CCUUGCU UGCGGCGAGACAUG 21 6569
BCLllA-6528 + GCCUUGCUUGCGGCGAGACAUG 22 6570
BCLllA-6529 + UGCCU UGCUUGCGGCGAGACAUG 23 6571 BCLllA-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 6572
BCLllA-6531 + CAACUUACAAAUACCCUG 18 6573
BCLllA-6532 + UCAACUUACAAAUACCCUG 19 6574
BCLllA-5494 + CUCAACUUACAAAUACCCUG 20 6575
BCLllA-6533 + GCUCAACUUACAAAUACCCUG 21 6576
BCLllA-6534 + GGCUCAACUUACAAAUACCCUG 22 6577
BCLllA-6535 + AGGCUCAACUUACAAAUACCCUG 23 6578
BCLllA-6536 + AAGGCUCAACUUACAAAUACCCUG 24 6579
BCLllA-6537 + GU UGUACAUGUGUAGCUG 18 6580
BCLllA-6538 + AGUUGUACAUGUGUAGCUG 19 6581
BCLllA-6539 + AAGUUGUACAUGUGUAGCUG 20 6582
BCLllA-6540 + CAAGUUGUACAUGUGUAGCUG 21 6583
BCLllA-6541 + GCAAGUUGUACAUGUGUAGCUG 22 6584
BCLllA-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 6585
BCLllA-6543 + UUGCAAGUUGUACAUGUGUAGCUG 24 6586
BCLllA-6544 + GCGAGACAUGGUGGGCUG 18 6587
BCLllA-6545 + GGCGAGACAUGGUGGGCUG 19 6588
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 6589
BCLllA-6546 + GCGGCGAGACAUGGUGGGCUG 21 6590
BCLllA-6547 + UGCGGCGAGACAUGGUGGGCUG 22 6591
BCLllA-6548 + U UGCGGCGAGACAUGGUGGGCUG 23 6592
BCLllA-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 6593
BCLllA-6550 + U UCCCGUUUGCU UAAGUG 18 6594
BCLllA-6551 + AUUCCCGU UUGCUUAAGUG 19 6595
BCLllA-6552 + AAUUCCCGUUUGCUUAAGUG 20 6596
BCLllA-6553 + GAAUUCCCGU UUGCUUAAGUG 21 6597
BCLllA-6554 + AGAAUUCCCGUUUGCU UAAGUG 22 6598
BCLllA-6555 + GAGAAUUCCCGUUUGCUUAAGUG 23 6599
BCLllA-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 6600
BCLllA-6557 + GGAGAGGCCCCUCCAGUG 18 6601
BCLllA-6558 + AGGAGAGGCCCCUCCAGUG 19 6602
BCLllA-6559 + GAGGAGAGGCCCCUCCAGUG 20 6603
BCLllA-6560 + GGAGGAGAGGCCCCUCCAGUG 21 6604
BCLllA-6561 + GGGAGGAGAGGCCCCUCCAGUG 22 6605
BCLllA-6562 + GGGGAGGAGAGGCCCCUCCAGUG 23 6606
BCLllA-6563 + AGGGGAGGAGAGGCCCCUCCAGUG 24 6607
BCLllA-6564 + UGGCACUGCCCACAGGUG 18 6608
BCLllA-6565 + CUGGCACUGCCCACAGGUG 19 6609
BCLllA-5498 + UCUGGCACUGCCCACAGGUG 20 6610
BCLllA-6566 + AUCUGGCACUGCCCACAGGUG 21 6611
BCLllA-6567 + CAUCUGGCACUGCCCACAGGUG 22 6612
BCLllA-6568 + UCAUCUGGCACUGCCCACAGGUG 23 6613 BCLllA-6569 + U UCAUCUGGCACUGCCCACAGGUG 24 6614
BCLllA-6570 + U UUUCAUCUCGAUUGGUG 18 6615
BCLllA-6571 + U UUUUCAUCUCGAUUGGUG 19 6616
BCLllA-6572 + U UUUUUCAUCUCGAUUGGUG 20 6617
BCLllA-6573 + CUU UUUUCAUCUCGAUUGGUG 21 6618
BCLllA-6574 + GCUUUUUUCAUCUCGAUUGGUG 22 6619
BCLllA-6575 + UGCUUUUU UCAUCUCGAUUGGUG 23 6620
BCLllA-6576 + AUGCUUUUUUCAUCUCGAUUGGUG 24 6621
BCLllA-6577 + GGAUUAGAGCUCCAUGUG 18 6622
BCLllA-6578 + GGGAUUAGAGCUCCAUGUG 19 6623
BCLllA-6579 + GGGGAUUAGAGCUCCAUGUG 20 6624
BCLllA-6580 + UGGGGAUUAGAGCUCCAUGUG 21 6625
BCLllA-6581 + GUGGGGAUUAGAGCUCCAUGUG 22 6626
BCLllA-6582 + CGUGGGGAUUAGAGCUCCAUGUG 23 6627
BCLllA-6583 + GCGUGGGGAUUAGAGCUCCAUGUG 24 6628
BCLllA-6584 + CUUUUUUCAUCUCGAU UG 18 6629
BCLllA-6585 + GCUUUUUUCAUCUCGAUUG 19 6630
BCLllA-6586 + UGCUUUUU UCAUCUCGAUUG 20 6631
BCLllA-6587 + AUGCUUUUUUCAUCUCGAUUG 21 6632
BCLllA-6588 + GAUGCUUUUU UCAUCUCGAUUG 22 6633
BCLllA-6589 + GGAUGCUUUUU UCAUCUCGAUUG 23 6634
BCLllA-6590 + UGGAUGCUUUU UUCAUCUCGAUUG 24 6635
BCLllA-6591 + GAGGCUCGGCUGUGGUUG 18 6636
BCLllA-6592 + AGAGGCUCGGCUGUGGUUG 19 6637
BCLllA-6593 + AAGAGGCUCGGCUGUGGUUG 20 6638
BCLllA-6594 + CAAGAGGCUCGGCUGUGGUUG 21 6639
BCLllA-6595 + UCAAGAGGCUCGGCUGUGGUUG 22 6640
BCLllA-6596 + UUCAAGAGGCUCGGCUGUGGUUG 23 6641
BCLllA-6597 + CUUCAAGAGGCUCGGCUGUGGUUG 24 6642
BCLllA-6598 + AUAAGAAUGUCCCCCAAU 18 6643
BCLllA-6599 + AAUAAGAAUGUCCCCCAAU 19 6644
BCLllA-5502 + AAAUAAGAAUGUCCCCCAAU 20 6645
BCLllA-6600 + AAAAUAAGAAUGUCCCCCAAU 21 6646
BCLllA-6601 + AAAAAUAAGAAUGUCCCCCAAU 22 6647
BCLllA-6602 + UAAAAAUAAGAAUGUCCCCCAAU 23 6648
BCLllA-6603 + AUAAAAAUAAGAAUGUCCCCCAAU 24 6649
BCLllA-6604 + CAUCCCAGGCGUGGGGAU 18 6650
BCLllA-6605 + UCAUCCCAGGCGUGGGGAU 19 6651
BCLllA-6606 + CUCAUCCCAGGCGUGGGGAU 20 6652
BCLllA-6607 + ACUCAUCCCAGGCGUGGGGAU 21 6653
BCLllA-6608 + CACUCAUCCCAGGCGUGGGGAU 22 6654
BCLllA-6609 + GCACUCAUCCCAGGCGUGGGGAU 23 6655 BCLllA-6610 + UGCACUCAUCCCAGGCGUGGGGAU 24 6656
BCLllA-6611 + UCAACUUACAAAUACCCU 18 6657
BCLllA-6612 + CUCAACUUACAAAUACCCU 19 6658
BCLllA-6613 + G CU CAACU U ACAAAU ACCCU 20 6659
BCLllA-6614 + GGCUCAACUUACAAAUACCCU 21 6660
BCLllA-6615 + AGGCUCAACUUACAAAUACCCU 22 6661
BCLllA-6616 + AAGGCUCAACUUACAAAUACCCU 23 6662
BCLllA-6617 + UAAGGCUCAACUUACAAAUACCCU 24 6663
BCLllA-6618 + GGCGAGACAUGGUGGGCU 18 6664
BCLllA-6619 + CGGCGAGACAUGGUGGGCU 19 6665
BCLllA-6620 + GCGGCGAGACAUGGUGGGCU 20 6666
BCLllA-6621 + UGCGGCGAGACAUGGUGGGCU 21 6667
BCLllA-6622 + UUGCGGCGAGACAUGGUGGGCU 22 6668
BCLllA-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 6669
BCLllA-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 6670
BCLllA-6625 + CAGUGCAGAAGUUUAUCU 18 6671
BCLllA-6626 + CCAGUGCAGAAGUUUAUCU 19 6672
BCLllA-6627 + UCCAGUGCAGAAGUUUAUCU 20 6673
BCLllA-6628 + CUCCAGUGCAGAAGUUUAUCU 21 6674
BCLllA-6629 + CCUCCAGUGCAGAAGUU UAUCU 22 6675
BCLllA-6630 + CCCUCCAGUGCAGAAGUUUAUCU 23 6676
BCLllA-6631 + CCCCUCCAGUGCAGAAGUUUAUCU 24 6677
BCLllA-6632 + CUGGCACUGCCCACAGGU 18 6678
BCLllA-6633 + UCUGGCACUGCCCACAGGU 19 6679
BCLllA-6634 + AUCUGGCACUGCCCACAGGU 20 6680
BCLllA-6635 + CAUCUGGCACUGCCCACAGGU 21 6681
BCLllA-6636 + UCAUCUGGCACUGCCCACAGGU 22 6682
BCLllA-6637 + U UCAUCUGGCACUGCCCACAGGU 23 6683
BCLllA-6638 + GUUCAUCUGGCACUGCCCACAGGU 24 6684
BCLllA-6639 + AAGAGGCUCGGCUGUGGU 18 6685
BCLllA-6640 + CAAGAGGCUCGGCUGUGGU 19 6686
BCLllA-5366 + UCAAGAGGCUCGGCUGUGGU 20 6687
BCLllA-6641 + U UCAAGAGGCUCGGCUGUGGU 21 6688
BCLllA-6642 + CUUCAAGAGGCUCGGCUGUGGU 22 6689
BCLllA-6643 + GCU UCAAGAGGCUCGGCUGUGGU 23 6690
BCLllA-6644 + GGCU UCAAGAGGCUCGGCUGUGGU 24 6691
BCLllA-6645 + CCUGCUAUGUGUUCCUGU 18 6692
BCLllA-6646 + ACCUGCUAUGUGUUCCUGU 19 6693
BCLllA-6647 + UACCUGCUAUGUGUUCCUGU 20 6694
BCLllA-6648 + UUACCUGCUAUGUGUUCCUGU 21 6695
BCLllA-6649 + UUUACCUGCUAUGUGUUCCUGU 22 6696
BCLllA-6650 + AUUUACCUGCUAUGUGUUCCUGU 23 6697 BCLllA-6651 + CAUUUACCUGCUAUGUGUUCCUGU 24 6698
BCLllA-6652 + GGAGGUCAUGAUCCCCUU 18 6699
BCLllA-6653 + AGGAGGUCAUGAUCCCCUU 19 6700
BCLllA-6654 + GAGGAGGUCAUGAUCCCCUU 20 6701
BCLllA-6655 + UGAGGAGGUCAUGAUCCCCUU 21 6702
BCLllA-6656 + GUGAGGAGGUCAUGAUCCCCU U 22 6703
BCLllA-6657 + GGUGAGGAGGUCAUGAUCCCCUU 23 6704
BCLllA-6658 + AGGUGAGGAGGUCAUGAUCCCCUU 24 6705
BCLllA-6659 + CUGCUAUGUGUUCCUGUU 18 6706
BCLllA-6660 + CCUGCUAUGUGUUCCUGUU 19 6707
BCLllA-5513 + ACCUGCUAUGUGUUCCUGUU 20 6708
BCLllA-6661 + UACCUGCUAUGUGUUCCUGUU 21 6709
BCLllA-6662 + UUACCUGCUAUGUGUUCCUGUU 22 6710
BCLllA-6663 + UUUACCUGCUAUGUGUUCCUGUU 23 6711
BCLllA-6664 + AUUUACCUGCUAUGUGUUCCUGUU 24 6712
BCLllA-6665 - AUUUUUAUCGAGCACAAA 18 6713
BCLllA-6666 - UAUUUUUAUCGAGCACAAA 19 6714
BCLllA-5342 - U UAUUUUUAUCGAGCACAAA 20 6715
BCLllA-6667 - CUUAUUUUUAUCGAGCACAAA 21 6716
BCLllA-6668 - UCUUAUUUU UAUCGAGCACAAA 22 6717
BCLllA-6669 - U UCUUAUUU UUAUCGAGCACAAA 23 6718
BCLllA-6670 - AUUCUUAUUUUUAUCGAGCACAAA 24 6719
BCLllA-6671 - AGAGGAAUUUGCCCCAAA 18 6720
BCLllA-6672 - UAGAGGAAUUUGCCCCAAA 19 6721
BCLllA-6673 - CUAGAGGAAUUUGCCCCAAA 20 6722
BCLllA-6674 - UCUAGAGGAAUUUGCCCCAAA 21 6723
BCLllA-6675 - AUCUAGAGGAAUUUGCCCCAAA 22 6724
BCLllA-6676 - CAUCUAGAGGAAUUUGCCCCAAA 23 6725
BCLllA-6677 - UCAUCUAGAGGAAUUUGCCCCAAA 24 6726
BCLllA-6678 - CCCCAGCACUUAAGCAAA 18 6727
BCLllA-6679 - ACCCCAGCACUUAAGCAAA 19 6728
BCLllA-5443 - AACCCCAGCACU UAAGCAAA 20 6729
BCLllA-6680 - AAACCCCAGCACUUAAGCAAA 21 6730
BCLllA-6681 - CAAACCCCAGCACU UAAGCAAA 22 6731
BCLllA-6682 - GCAAACCCCAGCACUUAAGCAAA 23 6732
BCLllA-6683 - G G C A A AC CC C AG C A C U U A AG C A A A 24 6733
BCLllA-6684 - UAUUUUUAUCGAGCACAA 18 6734
BCLllA-6685 - UUAUUUUUAUCGAGCACAA 19 6735
BCLllA-6686 - CUUAUUUUUAUCGAGCACAA 20 6736
BCLllA-6687 - UCU UAUUUUUAUCGAGCACAA 21 6737
BCLllA-6688 - UUCUUAUUUUUAUCGAGCACAA 22 6738
BCLllA-6689 - AUUCUUAUUUU UAUCGAGCACAA 23 6739 BCLllA-6690 - CAUUCUUAUUUUUAUCGAGCACAA 24 6740
BCLllA-6691 - CACCUUCCCCUUCACCAA 18 6741
BCLllA-6692 - CCACCUUCCCCUUCACCAA 19 6742
BCLllA-6693 - GCCACCUUCCCCUUCACCAA 20 6743
BCLllA-6694 - AG CCACCU U CCCCU U CACCAA 21 6744
BCLllA-6695 - AAGCCACCUUCCCCUUCACCAA 22 6745
BCLllA-6696 - U AAGCCACCU U CCCCU U CACCAA 23 6746
BCLllA-6697 - AUAAGCCACCUUCCCCUUCACCAA 24 6747
BCLllA-6698 - ACCCCAGCACUUAAGCAA 18 6748
BCLllA-6699 - AACCCCAGCACUUAAGCAA 19 6749
BCLllA-6700 - AAACCCCAGCACUUAAGCAA 20 6750
BCLllA-6701 - CAAACCCCAGCACUUAAGCAA 21 6751
BCLllA-6702 - GCAAACCCCAGCACUUAAGCAA 22 6752
BCLllA-6703 - GGCAAACCCCAGCACUUAAGCAA 23 6753
BCLllA-6704 - AGGCAAACCCCAGCACUUAAGCAA 24 6754
BCLllA-6705 - GGAACACAUAGCAGGUAA 18 6755
BCLllA-6706 - AGGAACACAUAGCAGGUAA 19 6756
BCLllA-6707 - CAGGAACACAUAGCAGGUAA 20 6757
BCLllA-6708 - ACAGGAACACAUAGCAGGUAA 21 6758
BCLllA-6709 - AACAGGAACACAUAGCAGGUAA 22 6759
BCLllA-6710 - AAACAGGAACACAUAGCAGGUAA 23 6760
BCLllA-6711 - CAAACAGGAACACAUAGCAGGUAA 24 6761
BCLllA-6712 - CUCCCCUCGUUCUGCACA 18 6762
BCLllA-6713 - CCUCCCCUCGUUCUGCACA 19 6763
BCLllA-5448 - UCCUCCCCUCGUUCUGCACA 20 6764
BCLllA-6714 - CUCCUCCCCUCGUUCUGCACA 21 6765
BCLllA-6715 - UCUCCUCCCCUCGUUCUGCACA 22 6766
BCLllA-6716 - CUCUCCUCCCCUCGUUCUGCACA 23 6767
BCLllA-6717 - CCUCUCCUCCCCUCGUUCUGCACA 24 6768
BCLllA-6718 - UGCCAGAUGAACUUCCCA 18 6769
BCLllA-6719 - GUGCCAGAUGAACUUCCCA 19 6770
BCLllA-6720 - AGUGCCAGAUGAACUUCCCA 20 6771
BCLllA-6721 - CAGUGCCAGAUGAACUUCCCA 21 6772
BCLllA-6722 - GCAGUGCCAGAUGAACUUCCCA 22 6773
BCLllA-6723 - GGCAGUGCCAGAUGAACUUCCCA 23 6774
BCLllA-6724 - GGGCAGUGCCAGAUGAACUUCCCA 24 6775
BCLllA-6725 - G C AG G U AAA UGAGAAGCA 18 6776
BCLllA-6726 - AGCAGGUAAAUGAGAAGCA 19 6777
BCLllA-5451 - UAGCAGGUAAAUGAGAAGCA 20 6778
BCLllA-6727 - AUAGCAGGU AAA U G AG A AG C A 21 6779
BCLllA-6728 - CAUAGCAGGUAAAUGAGAAGCA 22 6780
BCLllA-6729 - ACAU AGCAGGUAAAUGAGAAGCA 23 6781 BCLllA-6730 - CACAUAGCAGGUAAAUGAGAAGCA 24 6782
BCLllA-6731 - CACAGAUAAACUUCUGCA 18 6783
BCLllA-6732 - UCACAGAUAAACUUCUGCA 19 6784
BCLllA-6733 - UUCACAGAUAAACUUCUGCA 20 6785
BCLllA-6734 - UUUCACAGAUAAACUUCUGCA 21 6786
BCLllA-6735 - CUUUCACAGAUAAACUUCUGCA 22 6787
BCLllA-6736 - UCUUUCACAGAUAAACUUCUGCA 23 6788
BCLllA-6737 - UUCUUUCACAGAUAAACUUCUGCA 24 6789
BCLllA-6738 - CCCGUUGGGAGCUCCAGA 18 6790
BCLllA-6739 - GCCCGUUGGGAGCUCCAGA 19 6791
BCLllA-5453 - GGCCCGUUGGGAGCUCCAGA 20 6792
BCLllA-6740 - CGGCCCGUUGGGAGCUCCAGA 21 6793
BCLllA-6741 - ACGGCCCGUUGGGAGCUCCAGA 22 6794
BCLllA-6742 - CACGGCCCGUUGGGAGCUCCAGA 23 6795
BCLllA-6743 - CCACGGCCCGUUGGGAGCUCCAGA 24 6796
BCLllA-6744 - GUUUAUCAACGUCAUCUA 18 6797
BCLllA-6745 - UGUUUAUCAACGUCAUCUA 19 6798
BCLllA-6746 - UUGUUUAUCAACGUCAUCUA 20 6799
BCLllA-6747 - AUUGUUUAUCAACGUCAUCUA 21 6800
BCLllA-6748 - GAUUGUUUAUCAACGUCAUCUA 22 6801
BCLllA-6749 - CGAUUGUUUAUCAACGUCAUCUA 23 6802
BCLllA-6750 - ACGAUUGUUUAUCAACGUCAUCUA 24 6803
BCLllA-6751 - GGGACAUUCUUAUUUUUA 18 6804
BCLllA-6752 - GGGGACAUUCUUAUUUUUA 19 6805
BCLllA-6753 - GGGGGACAUUCUUAUUUUUA 20 6806
BCLllA-6754 - UGGGGGACAUUCUUAUUUUUA 21 6807
BCLllA-6755 - UUGGGGGACAUUCUUAUUUUUA 22 6808
BCLllA-6756 - AUUGGGGGACAUUCUUAUUUUUA 23 6809
BCLllA-6757 - CAUUGGGGGACAUUCUUAUUUUUA 24 6810
BCLllA-6758 - GAGGAAUUUGCCCCAAAC 18 6811
BCLllA-6759 - AGAGGAAUUUGCCCCAAAC 19 6812
BCLllA-5457 - UAGAGGAAUUUGCCCCAAAC 20 6813
BCLllA-6760 - CUAGAGGAAUUUGCCCCAAAC 21 6814
BCLllA-6761 - UCUAGAGGAAUUUGCCCCAAAC 22 6815
BCLllA-6762 - AUCUAGAGGAAUUUGCCCCAAAC 23 6816
BCLllA-6763 - CAUCUAGAGGAAUUUGCCCCAAAC 24 6817
BCLllA-6764 - ACAGAUAAACUUCUGCAC 18 6818
BCLllA-6765 - CACAGAUAAACUUCUGCAC 19 6819
BCLllA-5348 - UCACAGAUAAACUUCUGCAC 20 6820
BCLllA-6766 - UUCACAGAUAAACUUCUGCAC 21 6821
BCLllA-6767 - UUUCACAGAUAAACUUCUGCAC 22 6822
BCLllA-6768 - CUUUCACAGAUAAACUUCUGCAC 23 6823 BCLllA-6769 - UCUUUCACAGAUAAACUUCUGCAC 24 6824
BCLllA-6770 - CCUCCCCUCGUUCUGCAC 18 6825
BCLllA-6771 - UCCUCCCCUCGUUCUGCAC 19 6826
BCLllA-6772 - CUCCUCCCCUCGUUCUGCAC 20 6827
BCLllA-6773 - UCUCCUCCCCUCGUUCUGCAC 21 6828
BCLllA-6774 - CUCUCCUCCCCUCGUUCUGCAC 22 6829
BCLllA-6775 - CCUCUCCUCCCCUCGUUCUGCAC 23 6830
BCLllA-6776 - GCCUCUCCUCCCCUCGUUCUGCAC 24 6831
BCLllA-6777 - A A A A A AG C A U C C A A U C C C 18 6832
BCLllA-6778 - GAAAAAAGCAUCCAAUCCC 19 6833
BCLllA-6779 - UGAAAAAAGCAUCCAAUCCC 20 6834
BCLllA-6780 - AUGAAAAAAGCAUCCAAUCCC 21 6835
BCLllA-6781 - GAUGAAAAAAGCAUCCAAUCCC 22 6836
BCLllA-6782 - AGAUGAAAAAAGCAUCCAAUCCC 23 6837
BCLllA-6783 - GAGAUGAAAAAAGCAUCCAAUCCC 24 6838
BCLllA-6784 - AG C AG G U AAA U G AG A AG C 18 6839
BCLllA-6785 - U AG C AG G U AAA U G AG A AG C 19 6840
BCLllA-6786 - AUAGCAGGUAAAUGAGAAGC 20 6841
BCLllA-6787 - CAUAGCAGGUAAAUGAGAAGC 21 6842
BCLllA-6788 - ACAUAGCAGGU AAA U G AG A AG C 22 6843
BCLllA-6789 - CACAUAGCAGGU AAA U G AG A AG C 23 6844
BCLllA-6790 - ACACAUAGCAGGUAAAUGAGAAGC 24 6845
BCLllA-6791 - GAGCUCUAAUCCCCACGC 18 6846
BCLllA-6792 - GGAGCUCUAAUCCCCACGC 19 6847
BCLllA-6793 - UGGAGCUCUAAUCCCCACGC 20 6848
BCLllA-6794 - AUGGAGCUCUAAUCCCCACGC 21 6849
BCLllA-6795 - CAUGGAGCUCUAAUCCCCACGC 22 6850
BCLllA-6796 - ACAUGGAGCUCUAAUCCCCACGC 23 6851
BCLllA-6797 - CACAUGGAGCUCUAAUCCCCACGC 24 6852
BCLllA-6798 - UUGGCAUCCAGGUCACGC 18 6853
BCLllA-6799 - GUUGGCAUCCAGGUCACGC 19 6854
BCLllA-6800 - GGUUGGCAUCCAGGUCACGC 20 6855
BCLllA-6801 - AGGUUGGCAUCCAGGUCACGC 21 6856
BCLllA-6802 - GAGGUUGGCAUCCAGGUCACGC 22 6857
BCLllA-6803 - GGAGGUUGGCAUCCAGGUCACGC 23 6858
BCLllA-6804 - UGGAGGUUGGCAUCCAGGUCACGC 24 6859
BCLllA-6805 - UUGUUUAUCAACGUCAUC 18 6860
BCLllA-6806 - AUUGUUUAUCAACGUCAUC 19 6861
BCLllA-6807 - GAUUGUUUAUCAACGUCAUC 20 6862
BCLllA-6808 - CGAUUGUUUAUCAACGUCAUC 21 6863
BCLllA-6809 - ACGAUUGUUUAUCAACGUCAUC 22 6864
BCLllA-6810 - GACGAUUGUUUAUCAACGUCAUC 23 6865 BCLllA-6811 - UGACGAUUGUUUAUCAACGUCAUC 24 6866
BCLllA-6812 - CAACCACAGCCGAGCCUC 18 6867
BCLllA-6813 - CCAACCACAG CCG AG CCU C 19 6868
BCLllA-6814 - UCCAACCACAGCCGAGCCUC 20 6869
BCLllA-6815 - CUCCAACCACAGCCGAGCCUC 21 6870
BCLllA-6816 - UCUCCAACCACAGCCGAGCCUC 22 6871
BCLllA-6817 - UUCUCCAACCACAGCCGAGCCUC 23 6872
BCLllA-6818 - UUUCUCCAACCACAGCCGAGCCUC 24 6873
BCLllA-6819 - ACGGCCCGUUGGGAGCUC 18 6874
BCLllA-6820 - CACGGCCCGUUGGGAGCUC 19 6875
BCLllA-6821 - CCACGGCCCGUUGGGAGCUC 20 6876
BCLllA-6822 - ACCACGGCCCGUUGGGAGCUC 21 6877
BCLllA-6823 - GACCACGGCCCGUUGGGAGCUC 22 6878
BCLllA-6824 - AGACCACGGCCCGUUGGGAGCUC 23 6879
BCLllA-6825 - CAGACCACGGCCCGUUGGGAGCUC 24 6880
BCLllA-6826 - AUUAUUUUGCAGGUAAAG 18 6881
BCLllA-6827 - UAUUAUUUUGCAGGUAAAG 19 6882
BCLllA-6828 - GUAUUAUUUUGCAGGUAAAG 20 6883
BCLllA-6829 - UGUAUUAUUUUGCAGGUAAAG 21 6884
BCLllA-6830 - UUGUAUUAUUUUGCAGGUAAAG 22 6885
BCLllA-6831 - GUUGUAUUAUUUUGCAGGUAAAG 23 6886
BCLllA-6832 - UGUUGUAUUAUUUUGCAGGUAAAG 24 6887
BCLllA-6833 - AGGUAAAUGAGAAGCAAG 18 6888
BCLllA-6834 - C AG G U AAA U G AG A AG C A AG 19 6889
BCLllA-6835 - G C AG G U AAA UGAGAAGCAAG 20 6890
BCLllA-6836 - AG C AG G U AAA U G AG A AG C A AG 21 6891
BCLllA-6837 - U AG C AG G U AAA U G AG A AG C A AG 22 6892
BCLllA-6838 - AUAGCAGGUAAAUGAGAAGCAAG 23 6893
BCLllA-6839 - CAUAGCAGGUAAAUGAGAAGCAAG 24 6894
BCLllA-6840 - CCGCAGGGUAUUUGUAAG 18 6895
BCLllA-6841 - CCCGCAGGGUAUUUGUAAG 19 6896
BCLllA-6842 - CCCCGCAGGGUAUUUGUAAG 20 6897
BCLllA-6843 - GCCCCGCAGGGUAUUUGUAAG 21 6898
BCLllA-6844 - UGCCCCGCAGGGUAUUUGUAAG 22 6899
BCLllA-6845 - AUGCCCCGCAGGGUAUUUGUAAG 23 6900
BCLllA-6846 - UAUGCCCCGCAGGGUAUUUGUAAG 24 6901
BCLllA-6847 - UUGUUUCUCCAACCACAG 18 6902
BCLllA-6848 - UUUGUUUCUCCAACCACAG 19 6903
BCLllA-6849 - UUUUGUUUCUCCAACCACAG 20 6904
BCLllA-6850 - CUUUUGUUUCUCCAACCACAG 21 6905
BCLllA-6851 - GCUUUUGUUUCUCCAACCACAG 22 6906
BCLllA-6852 - UGCUUUUGUUUCUCCAACCACAG 23 6907 BCLllA-6853 - GUGCUUUUGUUUCUCCAACCACAG 24 6908
BCLllA-6854 - ACCUGUGGGCAGUGCCAG 18 6909
BCLllA-6855 - CACCUGUGGGCAGUGCCAG 19 6910
BCLllA-6856 - UCACCUGUGGGCAGUGCCAG 20 6911
BCLllA-6857 - CUCACCUGUGGGCAGUGCCAG 21 6912
BCLllA-6858 - CCUCACCUGUGGGCAGUGCCAG 22 6913
BCLllA-6859 - UCCUCACCUGUGGGCAGUGCCAG 23 6914
BCLllA-6860 - CUCCUCACCUGUGGGCAGUGCCAG 24 6915
BCLllA-6861 - GCCCGUUGGGAGCUCCAG 18 6916
BCLllA-6862 - GGCCCGUUGGGAGCUCCAG 19 6917
BCLllA-6863 - CGGCCCGUUGGGAGCUCCAG 20 6918
BCLllA-6864 - ACGGCCCGUUGGGAGCUCCAG 21 6919
BCLllA-6865 - CACGGCCCGUUGGGAGCUCCAG 22 6920
BCLllA-6866 - CCACGGCCCGUUGGGAGCUCCAG 23 6921
BCLllA-6867 - ACCACGGCCCGUUGGGAGCUCCAG 24 6922
BCLllA-6868 - UCCCCUUCACCAAUCGAG 18 6923
BCLllA-6869 - UUCCCCUUCACCAAUCGAG 19 6924
BCLllA-6870 - CUUCCCCUUCACCAAUCGAG 20 6925
BCLllA-6871 - CCUUCCCCUUCACCAAUCGAG 21 6926
BCLllA-6872 - ACCUUCCCCUUCACCAAUCGAG 22 6927
BCLllA-6873 - CACCU U CCCCU U CACCAAU CG AG 23 6928
BCLllA-6874 - CCACCUUCCCCUUCACCAAUCGAG 24 6929
BCLllA-6875 - GAACCAGACCACGGCCCG 18 6930
BCLllA-6876 - UGAACCAGACCACGGCCCG 19 6931
BCLllA-6877 - AUGAACCAGACCACGGCCCG 20 6932
BCLllA-6878 - GAUGAACCAGACCACGGCCCG 21 6933
BCLllA-6879 - UGAUGAACCAGACCACGGCCCG 22 6934
BCLllA-6880 - AUGAUGAACCAGACCACGGCCCG 23 6935
BCLllA-6881 - GAUGAUGAACCAGACCACGGCCCG 24 6936
BCLllA-6882 - AAAAAGCAUCCAAUCCCG 18 6937
BCLllA-6883 - A A A A A AG C A U C C A A U C C CG 19 6938
BCLllA-5358 - GAAAAAAGCAUCCAAUCCCG 20 6939
BCLllA-6884 - UGAAAAAAGCAUCCAAUCCCG 21 6940
BCLllA-6885 - AUG A A A A A AG CAUCCAAUCCCG 22 6941
BCLllA-6886 - GAUGAAAAAAGCAUCCAAUCCCG 23 6942
BCLllA-6887 - AGAUGAAAAAAGCAUCCAAUCCCG 24 6943
BCLllA-6888 - GAUAAACUUCUGCACUGG 18 6944
BCLllA-6889 - AGAUAAACUUCUGCACUGG 19 6945
BCLllA-5360 - CAGAUAAACUUCUGCACUGG 20 6946
BCLllA-6890 - ACAGAUAAACUUCUGCACUGG 21 6947
BCLllA-6891 - CACAGAUAAACUUCUGCACUGG 22 6948
BCLllA-6892 - UCA CAGAUAAACUUCUGCACUGG 23 6949 BCLllA-6893 - UUCACAGAUAAACUUCUGCACUGG 24 6950
BCLllA-6894 - AAGCCAUUCUUACAGAUG 18 6951
BCLllA-6895 - GAAGCCAUUCUUACAGAUG 19 6952
BCLllA-6896 - UGAAGCCAUUCUUACAGAUG 20 6953
BCLllA-6897 - UUGAAGCCAUUCUUACAGAUG 21 6954
BCLllA-6898 - CUUGAAGCCAUUCUUACAGAUG 22 6955
BCLllA-6899 - UCUUGAAGCCAUUCUUACAGAUG 23 6956
BCLllA-6900 - CUCUUGAAGCCAUUCUUACAGAUG 24 6957
BCLllA-6901 - AGAUAAACUUCUGCACUG 18 6958
BCLllA-6902 - CAGAUAAACUUCUGCACUG 19 6959
BCLllA-6903 - ACAGAUAAACUUCUGCACUG 20 6960
BCLllA-6904 - CACAGAUAAACUUCUGCACUG 21 6961
BCLllA-6905 - UCA CAGAUAAACUUCUGCACUG 22 6962
BCLllA-6906 - UUCACAGAUAAACUUCUGCACUG 23 6963
BCLllA-6907 - UUUCACAGAUAAACUUCUGCACUG 24 6964
BCLllA-6908 - CAGAUGAACUUCCCAUUG 18 6965
BCLllA-6909 - CCAGAUGAACUUCCCAUUG 19 6966
BCLllA-5499 - GCCAGAUGAACUUCCCAUUG 20 6967
BCLllA-6910 - UGCCAGAUGAACUUCCCAUUG 21 6968
BCLllA-6911 - GUGCCAGAUGAACUUCCCAUUG 22 6969
BCLllA-6912 - AGUGCCAGAUGAACUUCCCAUUG 23 6970
BCLllA-6913 - CAGUGCCAGAUGAACUUCCCAUUG 24 6971
BCLllA-6914 - AACACAUAGCAGGUAAAU 18 6972
BCLllA-6915 - GAACACAUAGCAGGUAAAU 19 6973
BCLllA-6916 - GGAACACAUAGCAGGUAAAU 20 6974
BCLllA-6917 - AGGAACACAUAGCAGGUAAAU 21 6975
BCLllA-6918 - CAGGAACACAUAGCAGGUAAAU 22 6976
BCLllA-6919 - ACAGGAACACAUAGCAGGUAAAU 23 6977
BCLllA-6920 - AACAGGAACACAUAGCAGGUAAAU 24 6978
BCLllA-6921 - GCCAGAUGAACUUCCCAU 18 6979
BCLllA-6922 - UGCCAGAUGAACUUCCCAU 19 6980
BCLllA-5503 - GUGCCAGAUGAACUUCCCAU 20 6981
BCLllA-6923 - AGUGCCAGAUGAACUUCCCAU 21 6982
BCLllA-6924 - CAGUGCCAGAUGAACUUCCCAU 22 6983
BCLllA-6925 - GCAGUGCCAGAUGAACUUCCCAU 23 6984
BCLllA-6926 - GGCAGUGCCAGAUGAACUUCCCAU 24 6985
BCLllA-6927 - AUCAUGACCUCCUCACCU 18 6986
BCLllA-6928 - GAUCAUGACCUCCUCACCU 19 6987
BCLllA-6929 - GGAUCAUGACCUCCUCACCU 20 6988
BCLllA-6930 - GGGAUCAUGACCUCCUCACCU 21 6989
BCLllA-6931 - GGGGAUCAUGACCUCCUCACCU 22 6990
BCLllA-6932 - AGGGGAUCAUGACCUCCUCACCU 23 6991 BCLllA-6933 - AAGGGGAUCAUGACCUCCUCACCU 24 6992
BCLllA-6934 - GCAAUGGCAGCCUCUGCU 18 6993
BCLllA-6935 - UGCAAUGGCAGCCUCUGCU 19 6994
BCLllA-6936 - AUGCAAUGGCAGCCUCUGCU 20 6995
BCLllA-6937 - AAUGCAAUGGCAGCCUCUGCU 21 6996
BCLllA-6938 - CAAUGCAAUGGCAGCCUCUGCU 22 6997
BCLllA-6939 - ACAAUGCAAUGGCAGCCUCUGCU 23 6998
BCLllA-6940 - AACAAUGCAAUGGCAGCCUCUGCU 24 6999
BCLllA-6941 - AACCAGACCACGGCCCGU 18 7000
BCLllA-6942 - GAACCAGACCACGGCCCGU 19 7001
BCLllA-5363 - UGAACCAGACCACGGCCCGU 20 7002
BCLllA-6943 - AUGAACCAGACCACGGCCCGU 21 7003
BCLllA-6944 - GAUGAACCAGACCACGGCCCGU 22 7004
BCLllA-6945 - UGAUGAACCAGACCACGGCCCGU 23 7005
BCLllA-6946 - AUGAUGAACCAGACCACGGCCCGU 24 7006
BCLllA-6947 - CCAGAUGAACUUCCCAUU 18 7007
BCLllA-6948 - GCCAGAUGAACUUCCCAUU 19 7008
BCLllA-5511 - UGCCAGAUGAACUUCCCAUU 20 7009
BCLllA-6949 - GUGCCAGAUGAACUUCCCAUU 21 7010
BCLllA-6950 - AGUGCCAGAUGAACUUCCCAUU 22 7011
BCLllA-6951 - CAGUGCCAGAUGAACUUCCCAUU 23 7012
BCLllA-6952 - GCAGUGCCAGAUGAACUUCCCAUU 24 7013
BCLllA-6953 - ACCAG ACCACGG CCCG U U 18 7014
BCLllA-6954 - AACCAG ACCACGG CCCG U U 19 7015
BCLllA-5512 - GAACCAG ACCACGG CCCG U U 20 7016
BCLllA-6955 - UG AACCAG ACCACGG CCCG U U 21 7017
BCLllA-6956 - AUGAACCAGACCACGGCCCGUU 22 7018
BCLllA-6957 - GAUGAACCAGACCACGGCCCGUU 23 7019
BCLllA-6958 - UGAUGAACCAGACCACGGCCCGUU 24 7020
Table 13D provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fourth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13D 4th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO
BCLllA-6959 + GUAUUCUUAGCAGGUUAA 18 7021
BCLllA-6960 + GGUAUUCUUAGCAGGUUAA 19 7022
BCLllA-5890 + UGGUAUUCUUAGCAGGUUAA 20 7023
BCLllA-6961 + CUGGUAUUCUUAGCAGGUUAA 21 7024
BCLllA-6962 + CCUGGUAUUCUUAGCAGGUUAA 22 7025
BCLllA-6963 + UCCUGGUAU UCUUAGCAGGUUAA 23 7026
BCLllA-6964 + AUCCUGGUAUUCUUAGCAGGUUAA 24 7027
BCLllA-6965 + CGGGAGGCUCCAUAGCCA 18 7028
BCLllA-6966 + GCGGGAGGCUCCAUAGCCA 19 7029
BCLllA-6967 + GGCGGGAGGCUCCAUAGCCA 20 7030
BCLllA-6968 + UGGCGGGAGGCUCCAUAGCCA 21 7031
BCLllA-6969 + AUGGCGGGAGGCUCCAUAGCCA 22 7032
BCLllA-6970 + CAUGGCGGGAGGCUCCAUAGCCA 23 7033
BCLllA-6971 + CCAUGGCGGGAGGCUCCAUAGCCA 24 7034
BCLllA-6972 + GGUCCGACUCGCCGGCCA 18 7035
BCLllA-6973 + CGGUCCGACUCGCCGGCCA 19 7036
BCLllA-6974 + GCGGUCCGACUCGCCGGCCA 20 7037
BCLllA-6975 + UGCGGUCCGACUCGCCGGCCA 21 7038
BCLllA-6976 + AUGCGGUCCGACUCGCCGGCCA 22 7039
BCLllA-6977 + UAUGCGGUCCGACUCGCCGGCCA 23 7040
BCLllA-6978 + CUAUGCGGUCCGACUCGCCGGCCA 24 7041
BCLllA-6979 + AGUCUCCGAAGCUAAGGA 18 7042
BCLllA-6980 + GAGUCUCCGAAGCUAAGGA 19 7043
BCLllA-5923 + GGAGUCUCCGAAGCUAAGGA 20 7044
BCLllA-6981 + UGGAGUCUCCGAAGCUAAGGA 21 7045
BCLllA-6982 + CUGGAGUCUCCGAAGCUAAGGA 22 7046
BCLllA-6983 + UCUGGAGUCUCCGAAGCUAAGGA 23 7047
BCLllA-6984 + GUCUGGAGUCUCCGAAGCUAAGGA 24 7048
BCLllA-6985 + GGACUAAACAGGGGGGGA 18 7049
BCLllA-6986 + UGGACUAAACAGGGGGGGA 19 7050
BCLllA-6987 + GUGGACUAAACAGGGGGGGA 20 7051
BCLllA-6988 + GGUGGACUAAACAGGGGGGGA 21 7052
BCLllA-6989 + UGGUGGACUAAACAGGGGGGGA 22 7053
BCLllA-6990 + GUGGUGGACUAAACAGGGGGGGA 23 7054
BCLllA-6991 + GGUGGUGGACUAAACAGGGGGGGA 24 7055
BCLllA-6992 + U UCUGCACCUAGUCCUGA 18 7056
BCLllA-6993 + AUUCUGCACCUAGUCCUGA 19 7057
BCLllA-5937 + CAU UCUGCACCUAGUCCUGA 20 7058
BCLllA-6994 + ACAUUCUGCACCUAGUCCUGA 21 7059 BCLllA-6995 + GACAUUCUGCACCUAGUCCUGA 22 7060
BCLllA-6996 + GGACAUUCUGCACCUAGUCCUGA 23 7061
BCLllA-6997 + AGGACAUUCUGCACCUAGUCCUGA 24 7062
BCLllA-6998 + GCACCCUGUCAAAGGCAC 18 7063
BCLllA-6999 + AGCACCCUGUCAAAGGCAC 19 7064
BCLllA-7000 + CAGCACCCUGUCAAAGGCAC 20 7065
BCLllA-7001 + G C AG CACCCUGU CAAAG G CAC 21 7066
BCLllA-7002 + CGCAGCACCCUGUCAAAGGCAC 22 7067
BCLllA-7003 + CCGCAGCACCCUGUCAAAGGCAC 23 7068
BCLllA-7004 + ACCGCAGCACCCUGUCAAAGGCAC 24 7069
BCLllA-7005 + UAAGUAGAUUCUUAAUCC 18 7070
BCLllA-7006 + CUAAGUAGAUUCUUAAUCC 19 7071
BCLllA-7007 + UCUAAGUAGAUUCUUAAUCC 20 7072
BCLllA-7008 + U UCUAAGUAGAUUCUUAAUCC 21 7073
BCLllA-7009 + U UUCUAAGUAGAUUCU UAAUCC 22 7074
BCLllA-7010 + CUU UCUAAGUAGAUUCUUAAUCC 23 7075
BCLllA-7011 + GCU UUCUAAGUAGAU UCUUAAUCC 24 7076
BCLllA-7012 + GGCGGCU UGCUACCUGGC 18 7077
BCLllA-7013 + GGGCGGCU UGCUACCUGGC 19 7078
BCLllA-6036 + AGGGCGGCUUGCUACCUGGC 20 7079
BCLllA-7014 + AAGGGCGGCUUGCUACCUGGC 21 7080
BCLllA-7015 + GAAGGGCGGCUUGCUACCUGGC 22 7081
BCLllA-7016 + GGAAGGGCGGCUUGCUACCUGGC 23 7082
BCLllA-7017 + AGGAAGGGCGGCUUGCUACCUGGC 24 7083
BCLllA-7018 + GCGCUUCAGCUUGCUGGC 18 7084
BCLllA-7019 + GGCGCUUCAGCUUGCUGGC 19 7085
BCLllA-7020 + UGGCGCUUCAGCUUGCUGGC 20 7086
BCLllA-7021 + GUGGCGCUUCAGCUUGCUGGC 21 7087
BCLllA-7022 + UGUGGCGCUUCAGCUUGCUGGC 22 7088
BCLllA-7023 + AUGUGGCGCUUCAGCUUGCUGGC 23 7089
BCLllA-7024 + CAUGUGGCGCUUCAGCU UGCUGGC 24 7090
BCLllA-7025 + CUCCUCGUCCCCGU UCUC 18 7091
BCLllA-7026 + CCUCCUCGUCCCCGUUCUC 19 7092
BCLllA-6050 + UCCUCCUCGUCCCCGUUCUC 20 7093
BCLllA-7027 + UUCCUCCUCGUCCCCGUUCUC 21 7094
BCLllA-7028 + CUUCCUCCUCGUCCCCGUUCUC 22 7095
BCLllA-7029 + UCU UCCUCCUCGUCCCCGUUCUC 23 7096
BCLllA-7030 + CUCU UCCUCCUCGUCCCCGUUCUC 24 7097
BCLllA-7031 + AGGCAAAAGGCGAUUGUC 18 7098
BCLllA-7032 + GAGGCAAAAGGCGAUUGUC 19 7099
BCLllA-6054 + GGAGGCAAAAGGCGAU UGUC 20 7100
BCLllA-7033 + AGGAGGCAAAAGGCGAUUGUC 21 7101 BCLllA-7034 + GAGGAGGCAAAAGGCGAUUGUC 22 7102
BCLllA-7035 + CGAGGAGGCAAAAGGCGAUUGUC 23 7103
BCLllA-7036 + ACGAGGAGGCAAAAGGCGAUUGUC 24 7104
BCLllA-7037 + AGCUCUCUGGGUACUACG 18 7105
BCLllA-7038 + GAGCUCUCUGGGUACUACG 19 7106
BCLllA-7039 + UGAGCUCUCUGGGUACUACG 20 7107
BCLllA-7040 + U UGAGCUCUCUGGGUACUACG 21 7108
BCLllA-7041 + CUUGAGCUCUCUGGGUACUACG 22 7109
BCLllA-7042 + UCU UGAGCUCUCUGGGUACUACG 23 7110
BCLllA-7043 + AUCUUGAGCUCUCUGGGUACUACG 24 7111
BCLllA-7044 + UGAAGGGAUACCAACCCG 18 7112
BCLllA-7045 + CUGAAGGGAUACCAACCCG 19 7113
BCLllA-6084 + CCUGAAGGGAUACCAACCCG 20 7114
BCLllA-7046 + UCCUGAAGGGAUACCAACCCG 21 7115
BCLllA-7047 + GUCCUGAAGGGAUACCAACCCG 22 7116
BCLllA-7048 + AGUCCUGAAGGGAUACCAACCCG 23 7117
BCLllA-7049 + UAGUCCUGAAGGGAUACCAACCCG 24 7118
BCLllA-7050 + GCAAACUCCCGUUCUCCG 18 7119
BCLllA-7051 + CGCAAACUCCCGUUCUCCG 19 7120
BCLllA-6094 + GCGCAAACUCCCGUUCUCCG 20 7121
BCLllA-7052 + AGCGCAAACUCCCGUUCUCCG 21 7122
BCLllA-7053 + AAGCGCAAACUCCCGUUCUCCG 22 7123
BCLllA-7054 + GAAGCGCAAACUCCCGU UCUCCG 23 7124
BCLllA-7055 + AGAAGCGCAAACUCCCGUUCUCCG 24 7125
BCLllA-7056 + GGCUGGGAGGGAGGAGGG 18 7126
BCLllA-7057 + GGGCUGGGAGGGAGGAGGG 19 7127
BCLllA-7058 + GGGGCUGGGAGGGAGGAGGG 20 7128
BCLllA-7059 + GGGGGCUGGGAGGGAGGAGGG 21 7129
BCLllA-7060 + CGGGGGCUGGGAGGGAGGAGGG 22 7130
BCLllA-7061 + CCGGGGGCUGGGAGGGAGGAGGG 23 7131
BCLllA-7062 + ACCGGGGGCUGGGAGGGAGGAGGG 24 7132
BCLllA-7063 + UGGUGGACUAAACAGGGG 18 7133
BCLllA-7064 + GUGGUGGACUAAACAGGGG 19 7134
BCLllA-6139 + GGUGGUGGACUAAACAGGGG 20 7135
BCLllA-7065 + CGGUGGUGGACUAAACAGGGG 21 7136
BCLllA-7066 + UCGGUGGUGGACUAAACAGGGG 22 7137
BCLllA-7067 + CUCGGUGGUGGACUAAACAGGGG 23 7138
BCLllA-7068 + UCUCGGUGGUGGACUAAACAGGGG 24 7139
BCLllA-7069 + AAGAGAAACCAUGCACUG 18 7140
BCLllA-7070 + CAAGAGAAACCAUGCACUG 19 7141
BCLllA-7071 + GCAAGAGAAACCAUGCACUG 20 7142
BCLllA-7072 + UGCAAGAGAAACCAUGCACUG 21 7143 BCLllA-7073 + UUGCAAGAGAAACCAUGCACUG 22 7144
BCLllA-7074 + GUUGCAAGAGAAACCAUGCACUG 23 7145
BCLllA-7075 + UGUUGCAAGAGAAACCAUGCACUG 24 7146
BCLllA-7076 + GUCAAAGGCACUCGGGUG 18 7147
BCLllA-7077 + UGUCAAAGGCACUCGGGUG 19 7148
BCLllA-7078 + CUGUCAAAGGCACUCGGGUG 20 7149
BCLllA-7079 + CCUGUCAAAGGCACUCGGGUG 21 7150
BCLllA-7080 + CCCUGUCAAAGGCACUCGGGUG 22 7151
BCLllA-7081 + ACCCUGUCAAAGGCACUCGGGUG 23 7152
BCLllA-7082 + CACCCUGUCAAAGGCACUCGGGUG 24 7153
BCLllA-7083 + CCCACCAAGUCGCUGGUG 18 7154
BCLllA-7084 + GCCCACCAAGUCGCUGGUG 19 7155
BCLllA-7085 + UGCCCACCAAGUCGCUGGUG 20 7156
BCLllA-7086 + CUGCCCACCAAGUCGCUGGUG 21 7157
BCLllA-7087 + GCUGCCCACCAAGUCGCUGGUG 22 7158
BCLllA-7088 + CGCUGCCCACCAAGUCGCUGGUG 23 7159
BCLllA-7089 + GCGCUGCCCACCAAGUCGCUGGUG 24 7160
BCLllA-7090 + GGGGUUAUUGUCUGCAAU 18 7161
BCLllA-7091 + AGGGGUUAUUGUCUGCAAU 19 7162
BCLllA-7092 + AAGGGGUUAUUGUCUGCAAU 20 7163
BCLllA-7093 + AAAGGGGUUAUUGUCUGCAAU 21 7164
BCLllA-7094 + UAAAGGGGUUAUUGUCUGCAAU 22 7165
BCLllA-7095 + UUAAAGGGGUUAUUGUCUGCAAU 23 7166
BCLllA-7096 + GUUAAAGGGGUUAUUGUCUGCAAU 24 7167
BCLllA-7097 + CUGGGUACUACGCCGAAU 18 7168
BCLllA-7098 + UCUGGGUACUACGCCGAAU 19 7169
BCLllA-6182 + CUCUGGGUACUACGCCGAAU 20 7170
BCLllA-7099 + UCUCUGGGUACUACGCCGAAU 21 7171
BCLllA-7100 + CUCUCUGGGUACUACGCCGAAU 22 7172
BCLllA-7101 + GCUCUCUGGGUACUACGCCGAAU 23 7173
BCLllA-7102 + AGCUCUCUGGGUACUACGCCGAAU 24 7174
BCLllA-7103 + CGUAGCCGGCGAGCCACU 18 7175
BCLllA-7104 + GCGUAGCCGGCGAGCCACU 19 7176
BCLllA-7105 + CGCGUAGCCGGCGAGCCACU 20 7177
BCLllA-7106 + CCGCGUAGCCGGCGAGCCACU 21 7178
BCLllA-7107 + GCCGCGUAGCCGGCGAGCCACU 22 7179
BCLllA-7108 + GGCCGCGUAGCCGGCGAGCCACU 23 7180
BCLllA-7109 + AGGCCGCGUAGCCGGCGAGCCACU 24 7181
BCLllA-7110 + CCACACAUCUUGAGCUCU 18 7182
BCLllA-7111 + GCCACACAUCUUGAGCUCU 19 7183
BCLllA-7112 + UGCCACACAUCUUGAGCUCU 20 7184
BCLllA-7113 + CUGCCACACAUCUUGAGCUCU 21 7185 BCLllA-7114 + ACUGCCACACAUCUUGAGCUCU 22 7186
BCLllA-7115 + AACUGCCACACAUCUUGAGCUCU 23 7187
BCLllA-7116 + AAACUGCCACACAUCUUGAGCUCU 24 7188
BCLllA-7117 + CGUUCUCCGGGAUCAGGU 18 7189
BCLllA-7118 + CCGUUCUCCGGGAUCAGGU 19 7190
BCLllA-6223 + CCCGUUCUCCGGGAUCAGGU 20 7191
BCLllA-7119 + CCCCGUUCUCCGGGAUCAGGU 21 7192
BCLllA-7120 + UCCCCGUUCUCCGGGAUCAGGU 22 7193
BCLllA-7121 + GUCCCCGUUCUCCGGGAUCAGGU 23 7194
BCLllA-7122 + CGUCCCCGUUCUCCGGGAUCAGGU 24 7195
BCLllA-7123 + CCAGGCGCUCUAUGCGGU 18 7196
BCLllA-7124 + CCCAGGCGCUCUAUGCGGU 19 7197
BCLllA-6226 + CCCCAGGCGCUCUAUGCGGU 20 7198
BCLllA-7125 + CCCCCAGGCGCUCUAUGCGGU 21 7199
BCLllA-7126 + GCCCCCAGGCGCUCUAUGCGGU 22 7200
BCLllA-7127 + CGCCCCCAGGCGCUCUAUGCGGU 23 7201
BCLllA-7128 + CCGCCCCCAGGCGCUCUAUGCGGU 24 7202
BCLllA-7129 - UUCCCAGCCACCUCUCCA 18 7203
BCLllA-7130 - CUUCCCAGCCACCUCUCCA 19 7204
BCLllA-5903 - CCUUCCCAGCCACCUCUCCA 20 7205
BCLllA-7131 - UCCUUCCCAGCCACCUCUCCA 21 7206
BCLllA-7132 - GUCCUUCCCAGCCACCUCUCCA 22 7207
BCLllA-7133 - UGUCCUUCCCAGCCACCUCUCCA 23 7208
BCLllA-7134 - AUGUCCUUCCCAGCCACCUCUCCA 24 7209
BCLllA-7135 - AGCGCAUCAAGCUCGAGA 18 7210
BCLllA-7136 - AAGCGCAUCAAGCUCGAGA 19 7211
BCLllA-5919 - UAAGCGCAUCAAGCUCGAGA 20 7212
BCLllA-7137 - CUAAGCGCAUCAAGCUCGAGA 21 7213
BCLllA-7138 - UCUAAGCGCAUCAAGCUCGAGA 22 7214
BCLllA-7139 - CUCUAAGCGCAUCAAGCUCGAGA 23 7215
BCLllA-7140 - UCUCUAAGCGCAUCAAGCUCGAGA 24 7216
BCLllA-7141 - GGAGCUGACGGAGAGCGA 18 7217
BCLllA-7142 - AGGAGCUGACGGAGAGCGA 19 7218
BCLllA-7143 - GAGGAGCUGACGGAGAGCGA 20 7219
BCLllA-7144 - GGAGGAGCUGACGGAGAGCGA 21 7220
BCLllA-7145 - AGGAGGAGCUGACGGAGAGCGA 22 7221
BCLllA-7146 - GAGGAGGAGCUGACGGAGAGCGA 23 7222
BCLllA-7147 - GGAGGAGGAGCUGACGGAGAGCGA 24 7223
BCLllA-7148 - UCACCCGAGUGCCU UUGA 18 7224
BCLllA-7149 - AUCACCCGAGUGCCUUUGA 19 7225
BCLllA-7150 - CAUCACCCGAGUGCCUU UGA 20 7226
BCLllA-7151 - CCAUCACCCGAGUGCCU UUGA 21 7227 BCLllA-7152 - CCCAUCACCCGAGUGCCUUUGA 22 7228
BCLllA-7153 - ACCCAUCACCCGAGUGCCUUUGA 23 7229
BCLllA-7154 - CACCCAUCACCCGAGUGCCUUUGA 24 7230
BCLllA-7155 - GAGCACUCCUCGGAGAAC 18 7231
BCLllA-7156 - GGAGCACUCCUCGGAGAAC 19 7232
BCLllA-5949 - CGGAGCACUCCUCGGAGAAC 20 7233
BCLllA-7157 - UCGGAGCACUCCUCGGAGAAC 21 7234
BCLllA-7158 - GUCGGAGCACUCCUCGGAGAAC 22 7235
BCLllA-7159 - CGUCGGAGCACUCCUCGGAGAAC 23 7236
BCLllA-7160 - UCGUCGGAGCACUCCUCGGAGAAC 24 7237
BCLllA-7161 - GCCCUGGCCACCCAUCAC 18 7238
BCLllA-7162 - GGCCCUGGCCACCCAUCAC 19 7239
BCLllA-7163 - UGGCCCUGGCCACCCAUCAC 20 7240
BCLllA-7164 - AUGGCCCUGGCCACCCAUCAC 21 7241
BCLllA-7165 - GAUGGCCCUGGCCACCCAUCAC 22 7242
BCLllA-7166 - AGAUGGCCCUGGCCACCCAUCAC 23 7243
BCLllA-7167 - GAGAUGGCCCUGGCCACCCAUCAC 24 7244
BCLllA-7168 - U U AACCUGCU AAGAAU AC 18 7245
BCLllA-7169 - UUUAACCUGCUAAGAAUAC 19 7246
BCLllA-7170 - CUUUAACCUGCUAAGAAUAC 20 7247
BCLllA-7171 - CCUUUAACCUGCUAAGAAUAC 21 7248
BCLllA-7172 - CCCUUUAACCUGCUAAGAAUAC 22 7249
BCLllA-7173 - CCCCUUUAACCUGCUAAGAAUAC 23 7250
BCLllA-7174 - ACCCCUUUAACCUGCUAAGAAUAC 24 7251
BCLllA-7175 - CGGAAGUCCCCUGACCCC 18 7252
BCLllA-7176 - ACGGAAGUCCCCUGACCCC 19 7253
BCLllA-7177 - CACGGAAGUCCCCUGACCCC 20 7254
BCLllA-7178 - ACACGGAAGUCCCCUGACCCC 21 7255
BCLllA-7179 - AACACGGAAGUCCCCUGACCCC 22 7256
BCLllA-7180 - GAACACGGAAGUCCCCUGACCCC 23 7257
BCLllA-7181 - CGAA CACGGAAGUCCCCUGACCCC 24 7258
BCLllA-7182 - AGAAAAUUUGAAGCCCCC 18 7259
BCLllA-7183 - G AG AAAAU U UG AAG CCCCC 19 7260
BCLllA-5969 - UGAGAAAAUUUGAAGCCCCC 20 7261
BCLllA-7184 - CUGAGAAAAUUUGAAGCCCCC 21 7262
BCLllA-7185 - UCUGAGAAAAUUUGAAGCCCCC 22 7263
BCLllA-7186 - UUCUGAGAAAAUUUGAAGCCCCC 23 7264
BCLllA-7187 - GUUCUGAGAAAAUUUGAAGCCCCC 24 7265
BCLllA-7188 - GCUAUGGAGCCUCCCGCC 18 7266
BCLllA-7189 - GGCUAUGGAGCCUCCCGCC 19 7267
BCLllA-7190 - UGGCUAUGGAGCCUCCCGCC 20 7268
BCLllA-7191 - AUGGCUAUGGAGCCUCCCGCC 21 7269 BCLllA-7192 - AAUGGCUAUGGAGCCUCCCGCC 22 7270
BCLllA-7193 - CAAUGGCUAUGGAGCCUCCCGCC 23 7271
BCLllA-7194 - CCAAUGGCUAUGGAGCCUCCCGCC 24 7272
BCLllA-7195 - AACACG CACAG AACACU C 18 7273
BCLllA-7196 - CAACACGCACAGAACACUC 19 7274
BCLllA-7197 - GCAACACGCACAGAACACUC 20 7275
BCLllA-7198 - U G CAAC ACG CAC AG AAC AC U C 21 7276
BCLllA-7199 - UUGCAACACGCACAGAACACUC 22 7277
BCLllA-7200 - C U U G CAAC ACG CACAG AAC ACU C 23 7278
BCLllA-7201 - UCUUGCAACACGCACAGAACACUC 24 7279
BCLllA-7202 - ACGAAGACUCGGUGGCCG 18 7280
BCLllA-7203 - GACGAAGACUCGGUGGCCG 19 7281
BCLllA-7204 - CGACGAAGACUCGGUGGCCG 20 7282
BCLllA-7205 - GCGACGAAGACUCGGUGGCCG 21 7283
BCLllA-7206 - UGCGACGAAGACUCGGUGGCCG 22 7284
BCLllA-7207 - UUGCGACGAAGACUCGGUGGCCG 23 7285
BCLllA-7208 - CUUGCGACGAAGACUCGGUGGCCG 24 7286
BCLllA-7209 - GCCCGGGGAGCUGGACGG 18 7287
BCLllA-7210 - CGCCCGGGGAGCUGGACGG 19 7288
BCLllA-6121 - CCGCCCGGGGAGCUGGACGG 20 7289
BCLllA-7211 - ACCGCCCGGGGAGCUGGACGG 21 7290
BCLllA-7212 - CACCGCCCGGGGAGCUGGACGG 22 7291
BCLllA-7213 - ACACCGCCCGGGGAGCUGGACGG 23 7292
BCLllA-7214 - CACACCGCCCGGGGAGCUGGACGG 24 7293
BCLllA-7215 - GCCGCGGCUGCUCCCCGG 18 7294
BCLllA-7216 - GGCCGCGGCUGCUCCCCGG 19 7295
BCLllA-7217 - UGGCCGCGGCUGCUCCCCGG 20 7296
BCLllA-7218 - AUGGCCGCGGCUGCUCCCCGG 21 7297
BCLllA-7219 - AAUGGCCGCGGCUGCUCCCCGG 22 7298
BCLllA-7220 - UAAUGGCCGCGGCUGCUCCCCGG 23 7299
BCLllA-7221 - UUAAUGGCCGCGGCUGCUCCCCGG 24 7300
BCLllA-7222 - UUUGACAGGGUGCUGCGG 18 7301
BCLllA-7223 - CUUUGACAGGGUGCUGCGG 19 7302
BCLllA-7224 - CCUUUGACAGGGUGCUGCGG 20 7303
BCLllA-7225 - GCCUUUGACAGGGUGCUGCGG 21 7304
BCLllA-7226 - UGCCUUUGACAGGGUGCUGCGG 22 7305
BCLllA-7227 - GUGCCUUUGACAGGGUGCUGCGG 23 7306
BCLllA-7228 - AGUGCCUUUGACAGGGUGCUGCGG 24 7307
BCLllA-7229 - AUUUGAAGCCCCCAGGGG 18 7308
BCLllA-7230 - AAUUUGAAGCCCCCAGGGG 19 7309
BCLllA-6140 - AAAUUUGAAGCCCCCAGGGG 20 7310
BCLllA-7231 - AAAAUUUGAAGCCCCCAGGGG 21 7311 BCLllA-7232 - GAAAAUUUGAAGCCCCCAGGGG 22 7312
BCLllA-7233 - AGAAAAUUUGAAGCCCCCAGGGG 23 7313
BCLllA-7234 - GAGAAAAUUUGAAGCCCCCAGGGG 24 7314
BCLllA-7235 - UCCCUUCAGGACUAGGUG 18 7315
BCLllA-7236 - AUCCCUUCAGGACUAGGUG 19 7316
BCLllA-7237 - UAUCCCUUCAGGACUAGGUG 20 7317
BCLllA-7238 - GUAUCCCUUCAGGACUAGGUG 21 7318
BCLllA-7239 - GGUAUCCCUUCAGGACUAGGUG 22 7319
BCLllA-7240 - UGGUAUCCCUUCAGGACUAGGUG 23 7320
BCLllA-7241 - UUGGUAUCCCUUCAGGACUAGGUG 24 7321
BCLllA-7242 - CGGUCAAGUCCAAGUCAU 18 7322
BCLllA-7243 - CCGG U CAAG U CCAAG U CAU 19 7323
BCLllA-7244 - CCCGGUCAAGUCCAAGUCAU 20 7324
BCLllA-7245 - CCCCGGUCAAGUCCAAGUCAU 21 7325
BCLllA-7246 - CCCCCGGUCAAGUCCAAGUCAU 22 7326
BCLllA-7247 - GCCCCCGGUCAAGUCCAAGUCAU 23 7327
BCLllA-7248 - AGCCCCCGGUCAAGUCCAAGUCAU 24 7328
BCLllA-7249 - UAACCCCUUUAACCUGCU 18 7329
BCLllA-7250 - AUAACCCCUUUAACCUGCU 19 7330
BCLllA-7251 - AAUAACCCCUUUAACCUGCU 20 7331
BCLllA-7252 - CAAUAACCCCUUUAACCUGCU 21 7332
BCLllA-7253 - ACAAUAACCCCUUUAACCUGCU 22 7333
BCLllA-7254 - GACAAUAACCCCUUUAACCUGCU 23 7334
BCLllA-7255 - AGACAAUAACCCCUUUAACCUGCU 24 7335
BCLllA-7256 - ACAGAACACUCAUGGAUU 18 7336
BCLllA-7257 - CACAGAACACUCAUGGAUU 19 7337
BCLllA-7258 - GCACAGAACACUCAUGGAUU 20 7338
BCLllA-7259 - CGCACAGAACACUCAUGGAUU 21 7339
BCLllA-7260 - ACGCACAGAACACUCAUGGAUU 22 7340
BCLllA-7261 - CACGCACAG AACACU CAUGG AUU 23 7341
BCLllA-7262 - ACACG CACAG AACACU CAUGG AU U 24 7342
BCLllA-7263 - GCAGACGCAGCGACACUU 18 7343
BCLllA-7264 - GGCAGACGCAGCGACACUU 19 7344
BCLllA-7265 - GGGCAGACGCAGCGACACUU 20 7345
BCLllA-7266 - AGGGCAGACGCAGCGACACUU 21 7346
BCLllA-7267 - GAGGGCAGACGCAGCGACACUU 22 7347
BCLllA-7268 - AGAGGGCAGACGCAGCGACACUU 23 7348
BCLllA-7269 - AAGAGGGCAGACGCAGCGACACUU 24 7349
BCLllA-7270 - CAAGAUGUGUGGCAGUUU 18 7350
BCLllA-7271 - UCAAGAUGUGUGGCAGUUU 19 7351
BCLllA-7272 - CUCAAGAUGUGUGGCAGUUU 20 7352
BCLllA-7273 - GCUCAAGAUGUGUGGCAGUUU 21 7353 BCLllA-7274 - AGCUCAAGAUGUGUGGCAGUUU 22 7354
BCLllA-7275 - GAGCUCAAGAUGUGUGGCAGUUU 23 7355
BCLllA-7276 - AGAGCUCAAGAUGUGUGGCAGUUU 24 7356
Table 13E provides exemplary targeting domains for knocking out the BCL11A gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13E
Figure imgf000318_0001
BCLllA-5892 + UCUCGGUGGUGGACUAAACA 20 7380
BCLllA-7299 + GUCUCGGUGGUGGACUAAACA 21 7381
BCLllA-7300 + UGUCUCGGUGGUGGACUAAACA 22 7382
BCLllA-7301 + AUGUCUCGGUGGUGGACUAAACA 23 7383
BCLllA-7302 + GAUGUCUCGGUGGUGGACUAAACA 24 7384
BCLllA-7303 + AG AAAG AGG U UGG AG ACA 18 7385
BCLllA-7304 + UAGAAAGAGGUUGGAGACA 19 7386
BCLllA-7305 + CU AG AAAG AGG U UGG AG ACA 20 7387
BCLllA-7306 + CCUAGAAAGAGGUUGGAGACA 21 7388
BCLllA-7307 + ACCUAGAAAGAGGUUGGAGACA 22 7389
BCLllA-7308 + AACCUAGAAAGAGGUUGGAGACA 23 7390
BCLllA-7309 + GAACCUAGAAAGAGGUUGGAGACA 24 7391
BCLllA-7310 + UCUGCAAUAUGAAUCCCA 18 7392
BCLllA-7311 + GUCUGCAAUAUGAAUCCCA 19 7393
BCLllA-5899 + UGUCUGCAAUAUGAAUCCCA 20 7394
BCLllA-7312 + UUGUCUGCAAUAUGAAUCCCA 21 7395
BCLllA-7313 + AUUGUCUGCAAUAUGAAUCCCA 22 7396
BCLllA-7314 + UAUUGUCUGCAAUAUGAAUCCCA 23 7397
BCLllA-7315 + UUAUUGUCUGCAAUAUGAAUCCCA 24 7398
BCLllA-7316 + CCUCGCUGAAGUGCUGCA 18 7399
BCLllA-7317 + GCCUCGCUGAAGUGCUGCA 19 7400
BCLllA-5909 + GGCCUCGCUGAAGUGCUGCA 20 7401
BCLllA-7318 + AGGCCUCGCUGAAGUGCUGCA 21 7402
BCLllA-7319 + AAGGCCUCGCUGAAGUGCUGCA 22 7403
BCLllA-7320 + GAAGGCCUCGCUGAAGUGCUGCA 23 7404
BCLllA-7321 + GGAAGGCCUCGCUGAAGUGCUGCA 24 7405
BCLllA-7322 + GAGGAGGGGCGGAUUGCA 18 7406
BCLllA-7323 + GGAGGAGGGGCGGAUUGCA 19 7407
BCLllA-7324 + GGGAGGAGGGGCGGAU UGCA 20 7408
BCLllA-7325 + AGGGAGGAGGGGCGGAUUGCA 21 7409
BCLllA-7326 + GAGGGAGGAGGGGCGGAUUGCA 22 7410
BCLllA-7327 + GGAGGGAGGAGGGGCGGAUUGCA 23 7411
BCLllA-7328 + GGGAGGGAGGAGGGGCGGAUUGCA 24 7412
BCLllA-7329 + GUUGCAGUAACCUUUGCA 18 7413
BCLllA-7330 + GGU UGCAGUAACCUUUGCA 19 7414
BCLllA-7331 + UGGUUGCAGUAACCUUUGCA 20 7415
BCLllA-7332 + AUGGUUGCAGUAACCU UUGCA 21 7416
BCLllA-7333 + AAUGGUUGCAGUAACCU UUGCA 22 7417
BCLllA-7334 + GAAUGGUUGCAGUAACCUUUGCA 23 7418
BCLllA-7335 + GGAAUGGUUGCAGUAACCUUUGCA 24 7419
BCLllA-7336 + GCUUAGAGAAGGGGCUCA 18 7420
BCLllA-7337 + CGCUUAGAGAAGGGGCUCA 19 7421 BCLllA-7338 + GCGCUUAGAGAAGGGGCUCA 20 7422
BCLllA-7339 + UGCGCUUAGAGAAGGGGCUCA 21 7423
BCLllA-7340 + AUGCGCUUAGAGAAGGGGCUCA 22 7424
BCLllA-7341 + GAUGCGCUUAGAGAAGGGGCUCA 23 7425
BCLllA-7342 + UGAUGCGCUUAGAGAAGGGGCUCA 24 7426
BCLllA-7343 + CGUCGGACUUGACCGUCA 18 7427
BCLllA-7344 + UCGUCGGACUUGACCGUCA 19 7428
BCLllA-5912 + GUCGUCGGACUUGACCGUCA 20 7429
BCLllA-7345 + CGUCGUCGGACUUGACCGUCA 21 7430
BCLllA-7346 + CCGUCGUCGGACU UGACCGUCA 22 7431
BCLllA-7347 + ACCGUCGUCGGACUUGACCGUCA 23 7432
BCLllA-7348 + GACCGUCGUCGGACUUGACCGUCA 24 7433
BCLllA-7349 + UACCAACCCGCGGGGUCA 18 7434
BCLllA-7350 + AUACCAACCCGCGGGGUCA 19 7435
BCLllA-5913 + GAUACCAACCCGCGGGGUCA 20 7436
BCLllA-7351 + GGAUACCAACCCGCGGGGUCA 21 7437
BCLllA-7352 + GGGAUACCAACCCGCGGGGUCA 22 7438
BCLllA-7353 + AGGGAUACCAACCCGCGGGGUCA 23 7439
BCLllA-7354 + AAGGGAUACCAACCCGCGGGGUCA 24 7440
BCLllA-7355 + GCUUGAUGCGCUUAGAGA 18 7441
BCLllA-7356 + AGCUUGAUGCGCUUAGAGA 19 7442
BCLllA-5917 + GAGCUUGAUGCGCUUAGAGA 20 7443
BCLllA-7357 + CGAGCU UGAUGCGCUUAGAGA 21 7444
BCLllA-7358 + UCGAGCUUGAUGCGCUUAGAGA 22 7445
BCLllA-7359 + CUCGAGCU UGAUGCGCU UAGAGA 23 7446
BCLllA-7360 + UCUCGAGCUUGAUGCGCUUAGAGA 24 7447
BCLllA-7361 + CUAGAAAGAGGUUGGAGA 18 7448
BCLllA-7362 + CCUAGAAAGAGGUUGGAGA 19 7449
BCLllA-7363 + ACCUAGAAAGAGGUUGGAGA 20 7450
BCLllA-7364 + AACCUAGAAAGAGGUUGGAGA 21 7451
BCLllA-7365 + GAACCUAGAAAGAGGUUGGAGA 22 7452
BCLllA-7366 + AGAACCUAGAAAGAGGUUGGAGA 23 7453
BCLllA-7367 + AAGAACCUAGAAAGAGGUUGGAGA 24 7454
BCLllA-7368 + GUGUGUGAAGAACCUAGA 18 7455
BCLllA-7369 + GGUGUGUGAAGAACCUAGA 19 7456
BCLllA-7370 + GGGUGUGUGAAGAACCUAGA 20 7457
BCLllA-7371 + GGGGUGUGUGAAGAACCUAGA 21 7458
BCLllA-7372 + GGGGGUGUGUGAAGAACCUAGA 22 7459
BCLllA-7373 + UGGGGGUGUGUGAAGAACCUAGA 23 7460
BCLllA-7374 + AUGGGGGUGUGUGAAGAACCUAGA 24 7461
BCLllA-7375 + CUCUGGGUACUACGCCGA 18 7462
BCLllA-7376 + UCUCUGGGUACUACGCCGA 19 7463 BCLllA-7377 + CUCUCUGGGUACUACGCCGA 20 7464
BCLllA-7378 + GCUCUCUGGGUACUACGCCGA 21 7465
BCLllA-7379 + AGCUCUCUGGGUACUACGCCGA 22 7466
BCLllA-7380 + GAGCUCUCUGGGUACUACGCCGA 23 7467
BCLllA-7381 + UGAGCUCUCUGGGUACUACGCCGA 24 7468
BCLllA-7382 + GAGGUUGGAGACAGAGGA 18 7469
BCLllA-7383 + AGAGGUUGGAGACAGAGGA 19 7470
BCLllA-5925 + AAGAGGUUGGAGACAGAGGA 20 7471
BCLllA-7384 + AAAGAGGUUGGAGACAGAGGA 21 7472
BCLllA-7385 + GAAAGAGGUUGGAGACAGAGGA 22 7473
BCLllA-7386 + AGAAAGAGGUUGGAGACAGAGGA 23 7474
BCLllA-7387 + UAGAAAGAGGUUGGAGACAGAGGA 24 7475
BCLllA-7388 + GGGGCGGAUUGCAGAGGA 18 7476
BCLllA-7389 + AGGGGCGGAUUGCAGAGGA 19 7477
BCLllA-5926 + GAGGGGCGGAUUGCAGAGGA 20 7478
BCLllA-7390 + GGAGGGGCGGAUUGCAGAGGA 21 7479
BCLllA-7391 + AGGAGGGGCGGAUUGCAGAGGA 22 7480
BCLllA-7392 + GAGGAGGGGCGGAUUGCAGAGGA 23 7481
BCLllA-7393 + GGAGGAGGGGCGGAUUGCAGAGGA 24 7482
BCLllA-7394 + CGGAUUGCAGAGGAGGGA 18 7483
BCLllA-7395 + GCGGAUUGCAGAGGAGGGA 19 7484
BCLllA-5930 + GGCGGAUUGCAGAGGAGGGA 20 7485
BCLllA-7396 + GGGCGGAUUGCAGAGGAGGGA 21 7486
BCLllA-7397 + GGGGCGGAUUGCAGAGGAGGGA 22 7487
BCLllA-7398 + AGGGGCGGAUUGCAGAGGAGGGA 23 7488
BCLllA-7399 + GAGGGGCGGAUUGCAGAGGAGGGA 24 7489
BCLllA-7400 + CUUGACCGGGGGCUGGGA 18 7490
BCLllA-7401 + ACU UGACCGGGGGCUGGGA 19 7491
BCLllA-5931 + GACUUGACCGGGGGCUGGGA 20 7492
BCLllA-7402 + GGACUUGACCGGGGGCUGGGA 21 7493
BCLllA-7403 + UGGACUUGACCGGGGGCUGGGA 22 7494
BCLllA-7404 + U UGGACUUGACCGGGGGCUGGGA 23 7495
BCLllA-7405 + CUUGGACUUGACCGGGGGCUGGGA 24 7496
BCLllA-7406 + CGCAUGACUUGGACUUGA 18 7497
BCLllA-7407 + UCGCAUGACU UGGACU UGA 19 7498
BCLllA-7408 + CUCGCAUGACUUGGACUUGA 20 7499
BCLllA-7409 + ACUCGCAUGACUUGGACUUGA 21 7500
BCLllA-7410 + AACUCGCAUGACU UGGACUUGA 22 7501
BCLllA-7411 + GAACUCGCAUGACUUGGACUUGA 23 7502
BCLllA-7412 + AGAACUCGCAUGACUUGGACUUGA 24 7503
BCLllA-7413 + GGGCCCGGACCACUAAUA 18 7504
BCLllA-7414 + CGGGCCCGGACCACUAAUA 19 7505 BCLllA-5940 + CCGGGCCCGGACCACUAAUA 20 7506
BCLllA-7415 + CCCGGGCCCGGACCACUAAUA 21 7507
BCLllA-7416 + GCCCGGGCCCGGACCACUAAUA 22 7508
BCLllA-7417 + UGCCCGGGCCCGGACCACUAAUA 23 7509
BCLllA-7418 + CUGCCCGGGCCCGGACCACUAAUA 24 7510
BCLllA-7419 + AGCUCUCUAAGUCUCCUA 18 7511
BCLllA-7420 + CAGCUCUCUAAGUCUCCUA 19 7512
BCLllA-7421 + CCAGCUCUCUAAGUCUCCUA 20 7513
BCLllA-7422 + GCCAGCUCUCUAAGUCUCCUA 21 7514
BCLllA-7423 + UGCCAGCUCUCUAAGUCUCCUA 22 7515
BCLllA-7424 + CUGCCAGCUCUCUAAGUCUCCUA 23 7516
BCLllA-7425 + CCUGCCAGCUCUCUAAGUCUCCUA 24 7517
BCLllA-7426 + CUGGAGUCUCCGAAGCUA 18 7518
BCLllA-7427 + UCUGGAGUCUCCGAAGCUA 19 7519
BCLllA-5943 + GUCUGGAGUCUCCGAAGCUA 20 7520
BCLllA-7428 + UGUCUGGAGUCUCCGAAGCUA 21 7521
BCLllA-7429 + U UGUCUGGAGUCUCCGAAGCUA 22 7522
BCLllA-7430 + AUUGUCUGGAGUCUCCGAAGCUA 23 7523
BCLllA-7431 + GAUUGUCUGGAGUCUCCGAAGCUA 24 7524
BCLllA-7432 + UCGAGCUUGAUGCGCU UA 18 7525
BCLllA-7433 + CUCGAGCU UGAUGCGCUUA 19 7526
BCLllA-7434 + UCUCGAGCUUGAUGCGCUUA 20 7527
BCLllA-7435 + U UCUCGAGCUUGAUGCGCUUA 21 7528
BCLllA-7436 + CUUCUCGAGCUUGAUGCGCUUA 22 7529
BCLllA-7437 + CCUUCUCGAGCUUGAUGCGCUUA 23 7530
BCLllA-7438 + UCCUUCUCGAGCU UGAUGCGCUUA 24 7531
BCLllA-7439 + GGUAUUCUUAGCAGGU UA 18 7532
BCLllA-7440 + UGGUAUUCUUAGCAGGUUA 19 7533
BCLllA-7441 + CUGGUAUUCUUAGCAGGUUA 20 7534
BCLllA-7442 + CCUGGUAUUCUUAGCAGGUUA 21 7535
BCLllA-7443 + UCCUGGUAUUCUUAGCAGGUUA 22 7536
BCLllA-7444 + AUCCUGGUAUUCUUAGCAGGUUA 23 7537
BCLllA-7445 + GAUCCUGGUAUUCUUAGCAGGUUA 24 7538
BCLllA-7446 + CUCGGUGGUGGACUAAAC 18 7539
BCLllA-7447 + UCUCGGUGGUGGACUAAAC 19 7540
BCLllA-5947 + GUCUCGGUGGUGGACUAAAC 20 7541
BCLllA-7448 + UGUCUCGGUGGUGGACUAAAC 21 7542
BCLllA-7449 + AUGUCUCGGUGGUGGACUAAAC 22 7543
BCLllA-7450 + GAUGUCUCGGUGGUGGACUAAAC 23 7544
BCLllA-7451 + UGAUGUCUCGGUGGUGGACUAAAC 24 7545
BCLllA-7452 + UCCGAGGAGUGCUCCGAC 18 7546
BCLllA-7453 + CUCCGAGGAGUGCUCCGAC 19 7547 BCLllA-7454 + UCUCCGAGGAGUGCUCCGAC 20 7548
BCLllA-7455 + UUCUCCGAGGAGUGCUCCGAC 21 7549
BCLllA-7456 + GUUCUCCGAGGAGUGCUCCGAC 22 7550
BCLllA-7457 + CGUUCUCCGAGGAGUGCUCCGAC 23 7551
BCLllA-7458 + CCGUUCUCCGAGGAGUGCUCCGAC 24 7552
BCLllA-7459 + AACUUGGCCACCACGGAC 18 7553
BCLllA-7460 + GAACUUGGCCACCACGGAC 19 7554
BCLllA-7461 + UGAACUUGGCCACCACGGAC 20 7555
BCLllA-7462 + U UGAACUUGGCCACCACGGAC 21 7556
BCLllA-7463 + CUUGAACUUGGCCACCACGGAC 22 7557
BCLllA-7464 + UCUUGAACUUGGCCACCACGGAC 23 7558
BCLllA-7465 + CUCU UGAACUUGGCCACCACGGAC 24 7559
BCLllA-7466 + CCGCAGAACUCGCAUGAC 18 7560
BCLllA-7467 + GCCGCAGAACUCGCAUGAC 19 7561
BCLllA-7468 + UGCCGCAGAACUCGCAUGAC 20 7562
BCLllA-7469 + U UGCCGCAGAACUCGCAUGAC 21 7563
BCLllA-7470 + CUUGCCGCAGAACUCGCAUGAC 22 7564
BCLllA-7471 + UCUUGCCGCAGAACUCGCAUGAC 23 7565
BCLllA-7472 + GUCUUGCCGCAGAACUCGCAUGAC 24 7566
BCLllA-7473 + GCAUGACUUGGACUUGAC 18 7567
BCLllA-7474 + CGCAUGACUUGGACUUGAC 19 7568
BCLllA-5957 + UCGCAUGACU UGGACU UGAC 20 7569
BCLllA-7475 + CUCGCAUGACUUGGACU UGAC 21 7570
BCLllA-7476 + ACUCGCAUGACUUGGACUUGAC 22 7571
BCLllA-7477 + AACUCGCAUGACU UGGACUUGAC 23 7572
BCLllA-7478 + GAACUCGCAUGACUUGGACUUGAC 24 7573
BCLllA-7479 + GGGGGUGUGUGAAGAACC 18 7574
BCLllA-7480 + UGGGGGUGUGUGAAGAACC 19 7575
BCLllA-7481 + AUGGGGGUGUGUGAAGAACC 20 7576
BCLllA-7482 + AAUGGGGGUGUGUGAAGAACC 21 7577
BCLllA-7483 + GAAUGGGGGUGUGUGAAGAACC 22 7578
BCLllA-7484 + CGAAUGGGGGUGUGUGAAGAACC 23 7579
BCLllA-7485 + CCGAAUGGGGGUGUGUGAAGAACC 24 7580
BCLllA-7486 + CUCU UGAACUUGGCCACC 18 7581
BCLllA-7487 + GCUCU UGAACUUGGCCACC 19 7582
BCLllA-7488 + CGCUCU UGAACUUGGCCACC 20 7583
BCLllA-7489 + UCGCUCUUGAACUUGGCCACC 21 7584
BCLllA-7490 + CUCGCUCUUGAACU UGGCCACC 22 7585
BCLllA-7491 + UCUCGCUCUUGAACUUGGCCACC 23 7586
BCLllA-7492 + UUCUCGCUCUUGAACUUGGCCACC 24 7587
BCLllA-7493 + CAUGACUUGGACUUGACC 18 7588
BCLllA-7494 + GCAUGACUUGGACUUGACC 19 7589 BCLllA-5965 + CGCAUGACUUGGACUUGACC 20 7590
BCLllA-7495 + UCGCAUGACUUGGACUUGACC 21 7591
BCLllA-7496 + CUCGCAUGACUUGGACUUGACC 22 7592
BCLllA-7497 + ACUCGCAUGACUUGGACUUGACC 23 7593
BCLllA-7498 + AACUCGCAUGACUUGGACUUGACC 24 7594
BCLllA-7499 + CUGAAGGGAUACCAACCC 18 7595
BCLllA-7500 + CCUGAAGGGAUACCAACCC 19 7596
BCLllA-7501 + UCCUGAAGGGAUACCAACCC 20 7597
BCLllA-7502 + GUCCUGAAGGGAUACCAACCC 21 7598
BCLllA-7503 + AGUCCUGAAGGGAUACCAACCC 22 7599
BCLllA-7504 + UAGUCCUGAAGGGAUACCAACCC 23 7600
BCLllA-7505 + CUAGUCCUGAAGGGAUACCAACCC 24 7601
BCLllA-7506 + CGCCCACGACCGCGCCCC 18 7602
BCLllA-7507 + ACGCCCACGACCGCGCCCC 19 7603
BCLllA-3830 + CACGCCCACGACCGCGCCCC 20 7604
BCLllA-7508 + CCACGCCCACGACCGCGCCCC 21 7605
BCLllA-7509 + CCCACGCCCACGACCGCGCCCC 22 7606
BCLllA-7510 + GCCCACGCCCACGACCGCGCCCC 23 7607
BCLllA-7511 + CGCCCACGCCCACGACCGCGCCCC 24 7608
BCLllA-7512 + GCUUUUUGGACAGGCCCC 18 7609
BCLllA-7513 + AGCUUUUUGGACAGGCCCC 19 7610
BCLllA-7514 + CAGCU UUUUGGACAGGCCCC 20 7611
BCLllA-7515 + GCAGCU UUUUGGACAGGCCCC 21 7612
BCLllA-7516 + AGCAGCUUUUUGGACAGGCCCC 22 7613
BCLllA-7517 + CAGCAGCUUU UUGGACAGGCCCC 23 7614
BCLllA-7518 + GCAGCAGCUUU UUGGACAGGCCCC 24 7615
BCLllA-7519 + CCCGAGGCCGACUCGCCC 18 7616
BCLllA-7520 + CCCCGAGGCCGACUCGCCC 19 7617
BCLllA-5977 + CCCCCGAGGCCGACUCGCCC 20 7618
BCLllA-7521 + CCCCCCGAGGCCGACUCGCCC 21 7619
BCLllA-7522 + GCCCCCCGAGGCCGACUCGCCC 22 7620
BCLllA-7523 + GGCCCCCCGAGGCCGACUCGCCC 23 7621
BCLllA-7524 + AGGCCCCCCGAGGCCGACUCGCCC 24 7622
BCLllA-7525 + GUCUGCAAUAUGAAUCCC 18 7623
BCLllA-7526 + UGUCUGCAAUAUGAAUCCC 19 7624
BCLllA-7527 + U UGUCUGCAAUAUGAAUCCC 20 7625
BCLllA-7528 + AUUGUCUGCAAUAUGAAUCCC 21 7626
BCLllA-7529 + UAUUGUCUGCAAUAUGAAUCCC 22 7627
BCLllA-7530 + U UAUUGUCUGCAAUAUGAAUCCC 23 7628
BCLllA-7531 + GU UAUUGUCUGCAAUAUGAAUCCC 24 7629
BCLllA-7532 + UUCCCGUGCCGCUGCGCC 18 7630
BCLllA-7533 + CUUCCCGUGCCGCUGCGCC 19 7631 BCLllA-7534 + ACUUCCCGUGCCGCUGCGCC 20 7632
BCLllA-7535 + CACUUCCCGUGCCGCUGCGCC 21 7633
BCLllA-7536 + CCACUUCCCGUGCCGCUGCGCC 22 7634
BCLllA-7537 + UCCACUUCCCGUGCCGCUGCGCC 23 7635
BCLllA-7538 + CUCCACUUCCCGUGCCGCUGCGCC 24 7636
BCLllA-7539 + CCCCGAGGCCGACUCGCC 18 7637
BCLllA-7540 + CCCCCGAGGCCGACUCGCC 19 7638
BCLllA-5989 + CCCCCCGAGGCCGACUCGCC 20 7639
BCLllA-7541 + GCCCCCCGAGGCCGACUCGCC 21 7640
BCLllA-7542 + GGCCCCCCGAGGCCGACUCGCC 22 7641
BCLllA-7543 + AGGCCCCCCGAGGCCGACUCGCC 23 7642
BCLllA-7544 + CAGGCCCCCCGAGGCCGACUCGCC 24 7643
BCLllA-7545 + GCGCUUAUGCUUCUCGCC 18 7644
BCLllA-7546 + CGCGCUUAUGCUUCUCGCC 19 7645
BCLllA-7547 + CCGCGCUUAUGCUUCUCGCC 20 7646
BCLllA-7548 + GCCGCGCUUAUGCUUCUCGCC 21 7647
BCLllA-7549 + GGCCGCGCUUAUGCUUCUCGCC 22 7648
BCLllA-7550 + UGGCCGCGCUUAUGCUUCUCGCC 23 7649
BCLllA-7551 + GUGGCCGCGCUUAUGCUUCUCGCC 24 7650
BCLllA-7552 + GGGAGGGGGGGCGUCGCC 18 7651
BCLllA-7553 + AGGGAGGGGGGGCGUCGCC 19 7652
BCLllA-5990 + GAGGGAGGGGGGGCGUCGCC 20 7653
BCLllA-7554 + GGAGGGAGGGGGGGCGUCGCC 21 7654
BCLllA-7555 + AGGAGGGAGGGGGGGCGUCGCC 22 7655
BCLllA-7556 + GAGGAGGGAGGGGGGGCGUCGCC 23 7656
BCLllA-7557 + AGAGGAGGGAGGGGGGGCGUCGCC 24 7657
BCLllA-7558 + CAUAGGGCUGGGCCGGCC 18 7658
BCLllA-7559 + GCAUAGGGCUGGGCCGGCC 19 7659
BCLllA-5991 + UGCAUAGGGCUGGGCCGGCC 20 7660
BCLllA-7560 + UUGCAUAGGGCUGGGCCGGCC 21 7661
BCLllA-7561 + UUUGCAUAGGGCUGGGCCGGCC 22 7662
BCLllA-7562 + CUUUGCAUAGGGCUGGGCCGGCC 23 7663
BCLllA-7563 + CCUUUGCAUAGGGCUGGGCCGGCC 24 7664
BCLllA-7564 + GUGUUGGGCAUCGCGGCC 18 7665
BCLllA-7565 + CGUGUUGGGCAUCGCGGCC 19 7666
BCLllA-5993 + CCGUGU UGGGCAUCGCGGCC 20 7667
BCLllA-7566 + UCCGUGUUGGGCAUCGCGGCC 21 7668
BCLllA-7567 + CUCCGUGU UGGGCAUCGCGGCC 22 7669
BCLllA-7568 + UCUCCGUGUUGGGCAUCGCGGCC 23 7670
BCLllA-7569 + UUCUCCGUGUUGGGCAUCGCGGCC 24 7671
BCLllA-7570 + AGGGAUCUUUGAGCUGCC 18 7672
BCLllA-7571 + AAGGGAUCUUUGAGCUGCC 19 7673 BCLllA-6000 + GAAGGGAUCUUUGAGCUGCC 20 7674
BCLllA-7572 + GGAAGGGAUCUUUGAGCUGCC 21 7675
BCLllA-7573 + AGGAAGGGAUCUUUGAGCUGCC 22 7676
BCLllA-7574 + AAGGAAGGGAUCUUUGAGCUGCC 23 7677
BCLllA-7575 + UAAGGAAGGGAUCUUUGAGCUGCC 24 7678
BCLllA-7576 + AUCCCUCCGUCCAGCUCC 18 7679
BCLllA-7577 + GAUCCCUCCGUCCAGCUCC 19 7680
BCLllA-7578 + AGAUCCCUCCGUCCAGCUCC 20 7681
BCLllA-7579 + GAGAUCCCUCCGUCCAGCUCC 21 7682
BCLllA-7580 + CGAGAUCCCUCCGUCCAGCUCC 22 7683
BCLllA-7581 + CCGAGAUCCCUCCGUCCAGCUCC 23 7684
BCLllA-7582 + CCCGAGAUCCCUCCGUCCAGCUCC 24 7685
BCLllA-7583 + CCAGCUCUCUAAGUCUCC 18 7686
BCLllA-7584 + GCCAGCUCUCUAAGUCUCC 19 7687
BCLllA-7585 + UGCCAGCUCUCUAAGUCUCC 20 7688
BCLllA-7586 + CUGCCAGCUCUCUAAGUCUCC 21 7689
BCLllA-7587 + CCUGCCAGCUCUCUAAGUCUCC 22 7690
BCLllA-7588 + CCCUGCCAGCUCUCUAAGUCUCC 23 7691
BCLllA-7589 + UCCCUGCCAGCUCUCUAAGUCUCC 24 7692
BCLllA-7590 + CGCAAACUCCCGUUCUCC 18 7693
BCLllA-7591 + GCGCAAACUCCCGUUCUCC 19 7694
BCLllA-7592 + AGCGCAAACUCCCGUUCUCC 20 7695
BCLllA-7593 + AAGCGCAAACUCCCGUUCUCC 21 7696
BCLllA-7594 + GAAGCGCAAACUCCCGU UCUCC 22 7697
BCLllA-7595 + AGAAGCGCAAACUCCCGUUCUCC 23 7698
BCLllA-7596 + GAGAAGCGCAAACUCCCGUUCUCC 24 7699
BCLllA-7597 + UCGCUGGUGCCGGGUUCC 18 7700
BCLllA-7598 + GUCGCUGGUGCCGGGUUCC 19 7701
BCLllA-6011 + AGUCGCUGGUGCCGGGUUCC 20 7702
BCLllA-7599 + AAGUCGCUGGUGCCGGGUUCC 21 7703
BCLllA-7600 + CAAGUCGCUGGUGCCGGGUUCC 22 7704
BCLllA-7601 + CCAAGUCGCUGGUGCCGGGUUCC 23 7705
BCLllA-7602 + ACCAAGUCGCUGGUGCCGGGUUCC 24 7706
BCLllA-7603 + GCCGCCUCCAGGCUCAGC 18 7707
BCLllA-7604 + CGCCGCCUCCAGGCUCAGC 19 7708
BCLllA-7605 + GCGCCGCCUCCAGGCUCAGC 20 7709
BCLllA-7606 + CGCGCCGCCUCCAGGCUCAGC 21 7710
BCLllA-7607 + GCGCGCCGCCUCCAGGCUCAGC 22 7711
BCLllA-7608 + GGCGCGCCGCCUCCAGGCUCAGC 23 7712
BCLllA-7609 + UGGCGCGCCGCCUCCAGGCUCAGC 24 7713
BCLllA-7610 + AGAAGGGGCUCAGCGAGC 18 7714
BCLllA-7611 + GAGAAGGGGCUCAGCGAGC 19 7715 BCLllA-6013 + AGAGAAGGGGCUCAGCGAGC 20 7716
BCLllA-7612 + UAGAGAAGGGGCUCAGCGAGC 21 7717
BCLllA-7613 + U UAGAGAAGGGGCUCAGCGAGC 22 7718
BCLllA-7614 + CUUAGAGAAGGGGCUCAGCGAGC 23 7719
BCLllA-7615 + GCU UAGAGAAGGGGCUCAGCGAGC 24 7720
BCLllA-7616 + CCCCCGAGGCCGACUCGC 18 7721
BCLllA-7617 + CCCCCCGAGGCCGACUCGC 19 7722
BCLllA-7618 + GCCCCCCGAGGCCGACUCGC 20 7723
BCLllA-7619 + GGCCCCCCGAGGCCGACUCGC 21 7724
BCLllA-7620 + AGGCCCCCCGAGGCCGACUCGC 22 7725
BCLllA-7621 + CAGGCCCCCCGAGGCCGACUCGC 23 7726
BCLllA-7622 + ACAGGCCCCCCGAGGCCGACUCGC 24 7727
BCLllA-7623 + AGGGAGGGGGGGCGUCGC 18 7728
BCLllA-7624 + GAGGGAGGGGGGGCGUCGC 19 7729
BCLllA-7625 + GGAGGGAGGGGGGGCGUCGC 20 7730
BCLllA-7626 + AGGAGGGAGGGGGGGCGUCGC 21 7731
BCLllA-7627 + GAGGAGGGAGGGGGGGCGUCGC 22 7732
BCLllA-7628 + AGAGGAGGGAGGGGGGGCGUCGC 23 7733
BCLllA-7629 + CAGAGGAGGGAGGGGGGGCGUCGC 24 7734
BCLllA-7630 + AGCGCCCUUCUGCCAGGC 18 7735
BCLllA-7631 + AAGCGCCCU UCUGCCAGGC 19 7736
BCLllA-6027 + AAAGCGCCCUUCUGCCAGGC 20 7737
BCLllA-7632 + GAAAGCGCCCUUCUGCCAGGC 21 7738
BCLllA-7633 + GGAAAGCGCCCU UCUGCCAGGC 22 7739
BCLllA-7634 + UGGAAAGCGCCCUUCUGCCAGGC 23 7740
BCLllA-7635 + GUGGAAAGCGCCCUUCUGCCAGGC 24 7741
BCLllA-7636 + GCAUAGGGCUGGGCCGGC 18 7742
BCLllA-7637 + UGCAUAGGGCUGGGCCGGC 19 7743
BCLllA-7638 + UUGCAUAGGGCUGGGCCGGC 20 7744
BCLllA-7639 + UUUGCAUAGGGCUGGGCCGGC 21 7745
BCLllA-7640 + CUU UGCAUAGGGCUGGGCCGGC 22 7746
BCLllA-7641 + CCUU UGCAUAGGGCUGGGCCGGC 23 7747
BCLllA-7642 + ACCUUUGCAUAGGGCUGGGCCGGC 24 7748
BCLllA-7643 + CGUGUUGGGCAUCGCGGC 18 7749
BCLllA-7644 + CCGUGUUGGGCAUCGCGGC 19 7750
BCLllA-6028 + UCCGUGUUGGGCAUCGCGGC 20 7751
BCLllA-7645 + CUCCGUGU UGGGCAUCGCGGC 21 7752
BCLllA-7646 + UCUCCGUGUUGGGCAUCGCGGC 22 7753
BCLllA-7647 + U UCUCCGUGUUGGGCAUCGCGGC 23 7754
BCLllA-7648 + GU UCUCCGUGUUGGGCAUCGCGGC 24 7755
BCLllA-7649 + AGCUGGGCCUGCCCGGGC 18 7756
BCLllA-7650 + GAGCUGGGCCUGCCCGGGC 19 7757 BCLllA-7651 + UGAGCUGGGCCUGCCCGGGC 20 7758
BCLllA-7652 + UUGAGCUGGGCCUGCCCGGGC 21 7759
BCLllA-7653 + UUUGAGCUGGGCCUGCCCGGGC 22 7760
BCLllA-7654 + UUUUGAGCUGGGCCUGCCCGGGC 23 7761
BCLllA-7655 + CUUUUGAGCUGGGCCUGCCCGGGC 24 7762
BCLllA-7656 + U UGGACUUGACCGGGGGC 18 7763
BCLllA-7657 + CUUGGACUUGACCGGGGGC 19 7764
BCLllA-6032 + ACUUGGACUUGACCGGGGGC 20 7765
BCLllA-7658 + GACUUGGACUUGACCGGGGGC 21 7766
BCLllA-7659 + UGACUUGGACUUGACCGGGGGC 22 7767
BCLllA-7660 + AUGACUUGGACUUGACCGGGGGC 23 7768
BCLllA-7661 + CAUGACUUGGACUUGACCGGGGGC 24 7769
BCLllA-7662 + CCUAGAGAAAUCCAUGGC 18 7770
BCLllA-7663 + UCCUAGAGAAAUCCAUGGC 19 7771
BCLllA-6035 + CUCCUAGAGAAAUCCAUGGC 20 7772
BCLllA-7664 + UCUCCUAGAGAAAUCCAUGGC 21 7773
BCLllA-7665 + GUCUCCUAGAGAAAUCCAUGGC 22 7774
BCLllA-7666 + AGUCUCCUAGAGAAAUCCAUGGC 23 7775
BCLllA-7667 + AAGUCUCCUAGAGAAAUCCAUGGC 24 7776
BCLllA-7668 + AUCCCAUGGAGAGGUGGC 18 7777
BCLllA-7669 + AAUCCCAUGGAGAGGUGGC 19 7778
BCLllA-6038 + GAAUCCCAUGGAGAGGUGGC 20 7779
BCLllA-7670 + UGAAUCCCAUGGAGAGGUGGC 21 7780
BCLllA-7671 + AUGAAUCCCAUGGAGAGGUGGC 22 7781
BCLllA-7672 + UAUGAAUCCCAUGGAGAGGUGGC 23 7782
BCLllA-7673 + AUAUGAAUCCCAUGGAGAGGUGGC 24 7783
BCLllA-7674 + ACUCGGGUGAUGGGUGGC 18 7784
BCLllA-7675 + CACUCGGGUGAUGGGUGGC 19 7785
BCLllA-7676 + GCACUCGGGUGAUGGGUGGC 20 7786
BCLllA-7677 + GGCACUCGGGUGAUGGGUGGC 21 7787
BCLllA-7678 + AGGCACUCGGGUGAUGGGUGGC 22 7788
BCLllA-7679 + AAGGCACUCGGGUGAUGGGUGGC 23 7789
BCLllA-7680 + AAAGGCACUCGGGUGAUGGGUGGC 24 7790
BCLllA-7681 + CUU UUGAGCUGGGCCUGC 18 7791
BCLllA-7682 + UCUUUUGAGCUGGGCCUGC 19 7792
BCLllA-7683 + CUCU UUUGAGCUGGGCCUGC 20 7793
BCLllA-7684 + CCUCUU UUGAGCUGGGCCUGC 21 7794
BCLllA-7685 + CCCUCUUU UGAGCUGGGCCUGC 22 7795
BCLllA-7686 + GCCCUCUUUUGAGCUGGGCCUGC 23 7796
BCLllA-7687 + UGCCCUCUUUUGAGCUGGGCCUGC 24 7797
BCLllA-7688 + AAGGGAUCUUUGAGCUGC 18 7798
BCLllA-7689 + GAAGGGAUCUUUGAGCUGC 19 7799 BCLllA-7690 + GGAAGGGAUCUUUGAGCUGC 20 7800
BCLllA-7691 + AGGAAGGGAUCUUUGAGCUGC 21 7801
BCLllA-7692 + AAGGAAGGGAUCUUUGAGCUGC 22 7802
BCLllA-7693 + UAAGGAAGGGAUCUUUGAGCUGC 23 7803
BCLllA-7694 + CUAAGGAAGGGAUCUU UGAGCUGC 24 7804
BCLllA-7695 + GCCUCGCUGAAGUGCUGC 18 7805
BCLllA-7696 + GGCCUCGCUGAAGUGCUGC 19 7806
BCLllA-7697 + AGGCCUCGCUGAAGUGCUGC 20 7807
BCLllA-7698 + AAGGCCUCGCUGAAGUGCUGC 21 7808
BCLllA-7699 + GAAGGCCUCGCUGAAGUGCUGC 22 7809
BCLllA-7700 + GGAAGGCCUCGCUGAAGUGCUGC 23 7810
BCLllA-7701 + UGGAAGGCCUCGCUGAAGUGCUGC 24 7811
BCLllA-7702 + GUGUUCUGUGCGUGUUGC 18 7812
BCLllA-7703 + AGUGUUCUGUGCGUGU UGC 19 7813
BCLllA-7704 + GAGUGUUCUGUGCGUGUUGC 20 7814
BCLllA-7705 + UGAGUGUUCUGUGCGUGUUGC 21 7815
BCLllA-7706 + AUGAGUGUUCUGUGCGUGUUGC 22 7816
BCLllA-7707 + CAUGAGUGUUCUGUGCGUGUUGC 23 7817
BCLllA-7708 + CCAUGAGUGUUCUGUGCGUGUUGC 24 7818
BCLllA-7709 + CGAAAACUGCCACACAUC 18 7819
BCLllA-7710 + CCGAAAACUGCCACACAUC 19 7820
BCLllA-7711 + UCCGAAAACUGCCACACAUC 20 7821
BCLllA-7712 + AUCCGAAAACUGCCACACAUC 21 7822
BCLllA-7713 + CAUCCGAAAACUGCCACACAUC 22 7823
BCLllA-7714 + CCAUCCGAAAACUGCCACACAUC 23 7824
BCLllA-7715 + UCCAUCCGAAAACUGCCACACAUC 24 7825
BCLllA-7716 + U UGGGGUCGUUCUCGCUC 18 7826
BCLllA-7717 + GUUGGGGUCGUUCUCGCUC 19 7827
BCLllA-7718 + GGU UGGGGUCGUUCUCGCUC 20 7828
BCLllA-7719 + AGGUUGGGGUCGUUCUCGCUC 21 7829
BCLllA-7720 + CAGGUUGGGGUCGUUCUCGCUC 22 7830
BCLllA-7721 + UCAGGUUGGGGUCGUUCUCGCUC 23 7831
BCLllA-7722 + AUCAGGUUGGGGUCGUUCUCGCUC 24 7832
BCLllA-7723 + CUCAGAACUUAAGGGCUC 18 7833
BCLllA-7724 + UCUCAGAACUUAAGGGCUC 19 7834
BCLllA-7725 + U UCUCAGAACUUAAGGGCUC 20 7835
BCLllA-7726 + U UUCUCAGAACUUAAGGGCUC 21 7836
BCLllA-7727 + U UUUCUCAGAACUUAAGGGCUC 22 7837
BCLllA-7728 + AUUUUCUCAGAACUUAAGGGCUC 23 7838
BCLllA-7729 + AAUUUUCUCAGAACUUAAGGGCUC 24 7839
BCLllA-7730 + GACAUUCUGCACCUAGUC 18 7840
BCLllA-7731 + GGACAUUCUGCACCUAGUC 19 7841 BCLllA-7732 + AGGACAUUCUGCACCUAGUC 20 7842
BCLllA-7733 + AAGGACAUUCUGCACCUAGUC 21 7843
BCLllA-7734 + GAAGGACAUUCUGCACCUAGUC 22 7844
BCLllA-7735 + GGAAGGACAUUCUGCACCUAGUC 23 7845
BCLllA-7736 + GGGAAGGACAUUCUGCACCUAGUC 24 7846
BCLllA-7737 + UCGUCGGACUUGACCGUC 18 7847
BCLllA-7738 + GUCGUCGGACUUGACCGUC 19 7848
BCLllA-7739 + CGUCGUCGGACUUGACCGUC 20 7849
BCLllA-7740 + CCGUCGUCGGACUUGACCGUC 21 7850
BCLllA-7741 + ACCGUCGUCGGACUUGACCGUC 22 7851
BCLllA-7742 + GACCGUCGUCGGACUUGACCGUC 23 7852
BCLllA-7743 + AGACCGUCGUCGGACUUGACCGUC 24 7853
BCLllA-7744 + AUACCAACCCGCGGGGUC 18 7854
BCLllA-7745 + GAUACCAACCCGCGGGGUC 19 7855
BCLllA-6052 + GGAUACCAACCCGCGGGGUC 20 7856
BCLllA-7746 + GGGAUACCAACCCGCGGGGUC 21 7857
BCLllA-7747 + AGGGAUACCAACCCGCGGGGUC 22 7858
BCLllA-7748 + AAGGGAUACCAACCCGCGGGGUC 23 7859
BCLllA-7749 + GAAGGGAUACCAACCCGCGGGGUC 24 7860
BCLllA-7750 + GGCAGGUCGAACUCCUUC 18 7861
BCLllA-7751 + GGGCAGGUCGAACUCCU UC 19 7862
BCLllA-7752 + GGGGCAGGUCGAACUCCUUC 20 7863
BCLllA-7753 + GGGGGCAGGUCGAACUCCUUC 21 7864
BCLllA-7754 + CGGGGGCAGGUCGAACUCCUUC 22 7865
BCLllA-7755 + CCGGGGGCAGGUCGAACUCCUUC 23 7866
BCLllA-7756 + GCCGGGGGCAGGUCGAACUCCUUC 24 7867
BCLllA-7757 + GUCGCUGGUGCCGGGU UC 18 7868
BCLllA-7758 + AGUCGCUGGUGCCGGGUUC 19 7869
BCLllA-6058 + AAGUCGCUGGUGCCGGGUUC 20 7870
BCLllA-7759 + CAAGUCGCUGGUGCCGGGUUC 21 7871
BCLllA-7760 + CCAAGUCGCUGGUGCCGGGUUC 22 7872
BCLllA-7761 + ACCAAGUCGCUGGUGCCGGGUUC 23 7873
BCLllA-7762 + CACCAAGUCGCUGGUGCCGGGUUC 24 7874
BCLllA-7763 + CGGUGGUGGACUAAACAG 18 7875
BCLllA-7764 + UCGGUGGUGGACUAAACAG 19 7876
BCLllA-6063 + CUCGGUGGUGGACUAAACAG 20 7877
BCLllA-7765 + UCUCGGUGGUGGACUAAACAG 21 7878
BCLllA-7766 + GUCUCGGUGGUGGACUAAACAG 22 7879
BCLllA-7767 + UGUCUCGGUGGUGGACUAAACAG 23 7880
BCLllA-7768 + AUGUCUCGGUGGUGGACUAAACAG 24 7881
BCLllA-7769 + GAAAGAGGUUGGAGACAG 18 7882
BCLllA-7770 + AG AAAG AGG U UGG AG ACAG 19 7883 BCLllA-6064 + UAGAAAGAGGUUGGAGACAG 20 7884
BCLllA-7771 + CU AG AAAG AGG U UGG AG ACAG 21 7885
BCLllA-7772 + CCUAGAAAGAGGUUGGAGACAG 22 7886
BCLllA-7773 + ACCU AGAAAG AGG UUGGAG ACAG 23 7887
BCLllA-7774 + AACCUAGAAAGAGGUUGGAGACAG 24 7888
BCLllA-7775 + AGGAGGGGCGGAUUGCAG 18 7889
BCLllA-7776 + GAGGAGGGGCGGAUUGCAG 19 7890
BCLllA-6069 + GGAGGAGGGGCGGAUUGCAG 20 7891
BCLllA-7777 + GGGAGGAGGGGCGGAU UGCAG 21 7892
BCLllA-7778 + AGGGAGGAGGGGCGGAUUGCAG 22 7893
BCLllA-7779 + GAGGGAGGAGGGGCGGAUUGCAG 23 7894
BCLllA-7780 + GGAGGGAGGAGGGGCGGAUUGCAG 24 7895
BCLllA-7781 + AAG AGG U UGG AG ACAG AG 18 7896
BCLllA-7782 + AAAGAGGUUGGAGACAGAG 19 7897
BCLllA-7783 + GAAAGAGGUUGGAGACAGAG 20 7898
BCLllA-7784 + AG AAAG AGG U UGG AG ACAG AG 21 7899
BCLllA-7785 + UAGAAAGAGGUUGGAGACAGAG 22 7900
BCLllA-7786 + CU AG AAAG AGG U UGG AG ACAG AG 23 7901
BCLllA-7787 + CCU AG AAAG AGG U UGG AG ACAG AG 24 7902
BCLllA-7788 + GAGGGGCGGAUUGCAGAG 18 7903
BCLllA-7789 + GGAGGGGCGGAUUGCAGAG 19 7904
BCLllA-7790 + AGGAGGGGCGGAUUGCAGAG 20 7905
BCLllA-7791 + GAGGAGGGGCGGAUUGCAGAG 21 7906
BCLllA-7792 + GGAGGAGGGGCGGAUUGCAGAG 22 7907
BCLllA-7793 + GGGAGGAGGGGCGGAU UGCAGAG 23 7908
BCLllA-7794 + AGGGAGGAGGGGCGGAUUGCAGAG 24 7909
BCLllA-7795 + AGCUUGAUGCGCUUAGAG 18 7910
BCLllA-7796 + GAGCUUGAUGCGCUUAGAG 19 7911
BCLllA-7797 + CGAGCUUGAUGCGCUUAGAG 20 7912
BCLllA-7798 + UCGAGCUUGAUGCGCU UAGAG 21 7913
BCLllA-7799 + CUCGAGCU UGAUGCGCUUAGAG 22 7914
BCLllA-7800 + UCUCGAGCUUGAUGCGCUUAGAG 23 7915
BCLllA-7801 + U UCUCGAGCUUGAUGCGCUUAGAG 24 7916
BCLllA-7802 + GAGAAGGGGCUCAGCGAG 18 7917
BCLllA-7803 + AGAGAAGGGGCUCAGCGAG 19 7918
BCLllA-7804 + UAGAGAAGGGGCUCAGCGAG 20 7919
BCLllA-7805 + UUAGAGAAGGGGCUCAGCGAG 21 7920
BCLllA-7806 + CUU AGAGAAGGGGCUCAGCGAG 22 7921
BCLllA-7807 + GCUUAGAGAAGGGGCUCAGCGAG 23 7922
BCLllA-7808 + CGCUUAGAGAAGGGGCUCAGCGAG 24 7923
BCLllA-7809 + GGAUUGCAGAGGAGGGAG 18 7924
BCLllA-7810 + CGGAUUGCAGAGGAGGGAG 19 7925 BCLllA-6075 + GCGGAUUGCAGAGGAGGGAG 20 7926
BCLllA-7811 + GGCGGAUUGCAGAGGAGGGAG 21 7927
BCLllA-7812 + GGGCGGAUUGCAGAGGAGGGAG 22 7928
BCLllA-7813 + GGGGCGGAUUGCAGAGGAGGGAG 23 7929
BCLllA-7814 + AGGGGCGGAUUGCAGAGGAGGGAG 24 7930
BCLllA-7815 + CCGGGGGCUGGGAGGGAG 18 7931
BCLllA-7816 + ACCGGGGGCUGGGAGGGAG 19 7932
BCLllA-7817 + GACCGGGGGCUGGGAGGGAG 20 7933
BCLllA-7818 + UGACCGGGGGCUGGGAGGGAG 21 7934
BCLllA-7819 + U UGACCGGGGGCUGGGAGGGAG 22 7935
BCLllA-7820 + CUUGACCGGGGGCUGGGAGGGAG 23 7936
BCLllA-7821 + ACUUGACCGGGGGCUGGGAGGGAG 24 7937
BCLllA-7822 + CUGAAGUGCUGCAUGGAG 18 7938
BCLllA-7823 + GCUGAAGUGCUGCAUGGAG 19 7939
BCLllA-7824 + CGCUGAAGUGCUGCAUGGAG 20 7940
BCLllA-7825 + UCGCUGAAGUGCUGCAUGGAG 21 7941
BCLllA-7826 + CUCGCUGAAGUGCUGCAUGGAG 22 7942
BCLllA-7827 + CCUCGCUGAAGUGCUGCAUGGAG 23 7943
BCLllA-7828 + GCCUCGCUGAAGUGCUGCAUGGAG 24 7944
BCLllA-7829 + CGUCUGCCCUCUUUUGAG 18 7945
BCLllA-7830 + GCGUCUGCCCUCUUUUGAG 19 7946
BCLllA-7831 + UGCGUCUGCCCUCUUUUGAG 20 7947
BCLllA-7832 + CUGCGUCUGCCCUCU UUUGAG 21 7948
BCLllA-7833 + GCUGCGUCUGCCCUCU U UUGAG 22 7949
BCLllA-7834 + CGCUGCGUCUGCCCUCU UUUGAG 23 7950
BCLllA-7835 + UCGCUGCGUCUGCCCUCUUUUGAG 24 7951
BCLllA-7836 + CCGAGGAGUGCUCCGACG 18 7952
BCLllA-7837 + UCCGAGGAGUGCUCCGACG 19 7953
BCLllA-6080 + CUCCGAGGAGUGCUCCGACG 20 7954
BCLllA-7838 + UCUCCGAGGAGUGCUCCGACG 21 7955
BCLllA-7839 + U UCUCCGAGGAGUGCUCCGACG 22 7956
BCLllA-7840 + GU UCUCCGAGGAGUGCUCCGACG 23 7957
BCLllA-7841 + CGU UCUCCGAGGAGUGCUCCGACG 24 7958
BCLllA-7842 + ACCAUGCCCUGCAUGACG 18 7959
BCLllA-7843 + CACCAUGCCCUGCAUGACG 19 7960
BCLllA-7844 + GCACCAUGCCCUGCAUGACG 20 7961
BCLllA-7845 + AGCACCAUGCCCUGCAUGACG 21 7962
BCLllA-7846 + GAGCACCAUGCCCUGCAUGACG 22 7963
BCLllA-7847 + UGAGCACCAUGCCCUGCAUGACG 23 7964
BCLllA-7848 + CUGAGCACCAUGCCCUGCAUGACG 24 7965
BCLllA-7849 + CCGAGGCCGACUCGCCCG 18 7966
BCLllA-7850 + CCCGAGGCCGACUCGCCCG 19 7967 BCLllA-6088 + CCCCGAGGCCGACUCGCCCG 20 7968
BCLllA-7851 + CCCCCGAGGCCGACUCGCCCG 21 7969
BCLllA-7852 + CCCCCCGAGGCCGACUCGCCCG 22 7970
BCLllA-7853 + GCCCCCCGAGGCCGACUCGCCCG 23 7971
BCLllA-7854 + GGCCCCCCGAGGCCGACUCGCCCG 24 7972
BCLllA-7855 + CUGGAGGCCGCGUAGCCG 18 7973
BCLllA-7856 + CCUGGAGGCCGCGUAGCCG 19 7974
BCLllA-7857 + GCCUGGAGGCCGCGUAGCCG 20 7975
BCLllA-7858 + UGCCUGGAGGCCGCGUAGCCG 21 7976
BCLllA-7859 + CUGCCUGGAGGCCGCGUAGCCG 22 7977
BCLllA-7860 + GCUGCCUGGAGGCCGCGUAGCCG 23 7978
BCLllA-7861 + AGCUGCCUGGAGGCCGCGUAGCCG 24 7979
BCLllA-7862 + AAUUUGAACGUCUUGCCG 18 7980
BCLllA-7863 + AAAUUUGAACGUCUUGCCG 19 7981
BCLllA-7864 + GAAAUUUGAACGUCUUGCCG 20 7982
BCLllA-7865 + UGAAAUUUGAACGUCUUGCCG 21 7983
BCLllA-7866 + CUGAAAUUUGAACGUCUUGCCG 22 7984
BCLllA-7867 + UCUGAAAUUUGAACGUCUUGCCG 23 7985
BCLllA-7868 + CUCUGAAAUUUGAACGUCUUGCCG 24 7986
BCLllA-7869 + UCUCCGAGGAGUGCUCCG 18 7987
BCLllA-7870 + UUCUCCGAGGAGUGCUCCG 19 7988
BCLllA-7871 + GUUCUCCGAGGAGUGCUCCG 20 7989
BCLllA-7872 + CGUUCUCCGAGGAGUGCUCCG 21 7990
BCLllA-7873 + CCGUUCUCCGAGGAGUGCUCCG 22 7991
BCLllA-7874 + CCCGUUCUCCGAGGAGUGCUCCG 23 7992
BCLllA-7875 + UCCCGU UCUCCGAGGAGUGCUCCG 24 7993
BCLllA-7876 + CGCUGGUGCCGGGUUCCG 18 7994
BCLllA-7877 + UCGCUGGUGCCGGGUUCCG 19 7995
BCLllA-6096 + GUCGCUGGUGCCGGGUUCCG 20 7996
BCLllA-7878 + AGUCGCUGGUGCCGGGUUCCG 21 7997
BCLllA-7879 + AAGUCGCUGGUGCCGGGUUCCG 22 7998
BCLllA-7880 + CAAGUCGCUGGUGCCGGGUUCCG 23 7999
BCLllA-7881 + CCAAGUCGCUGGUGCCGGGUUCCG 24 8000
BCLllA-7882 + GCCGGCCUGGGGACAGCG 18 8001
BCLllA-7883 + GGCCGGCCUGGGGACAGCG 19 8002
BCLllA-7884 + GGGCCGGCCUGGGGACAGCG 20 8003
BCLllA-7885 + UGGGCCGGCCUGGGGACAGCG 21 8004
BCLllA-7886 + CUGGGCCGGCCUGGGGACAGCG 22 8005
BCLllA-7887 + GCUGGGCCGGCCUGGGGACAGCG 23 8006
BCLllA-7888 + GGCUGGGCCGGCCUGGGGACAGCG 24 8007
BCLllA-7889 + GGU UCCGGGGAGCUGGCG 18 8008
BCLllA-7890 + GGGUUCCGGGGAGCUGGCG 19 8009 BCLllA-7891 + CGGGUUCCGGGGAGCUGGCG 20 8010
BCLllA-7892 + CCGGGUUCCGGGGAGCUGGCG 21 8011
BCLllA-7893 + GCCGGGUUCCGGGGAGCUGGCG 22 8012
BCLllA-7894 + UGCCGGGU UCCGGGGAGCUGGCG 23 8013
BCLllA-7895 + GUGCCGGGUUCCGGGGAGCUGGCG 24 8014
BCLllA-7896 + CCCCAGGCGCUCUAUGCG 18 8015
BCLllA-7897 + CCCCCAGGCGCUCUAUGCG 19 8016
BCLllA-7898 + GCCCCCAGGCGCUCUAUGCG 20 8017
BCLllA-7899 + CGCCCCCAGGCGCUCUAUGCG 21 8018
BCLllA-7900 + CCGCCCCCAGGCGCUCUAUGCG 22 8019
BCLllA-7901 + UCCGCCCCCAGGCGCUCUAUGCG 23 8020
BCLllA-7902 + U UCCGCCCCCAGGCGCUCUAUGCG 24 8021
BCLllA-7903 + ACCUGGUGGAAGGCCUCG 18 8022
BCLllA-7904 + GACCUGGUGGAAGGCCUCG 19 8023
BCLllA-7905 + GGACCUGGUGGAAGGCCUCG 20 8024
BCLllA-7906 + AGGACCUGGUGGAAGGCCUCG 21 8025
BCLllA-7907 + CAGGACCUGGUGGAAGGCCUCG 22 8026
BCLllA-7908 + CCAGGACCUGGUGGAAGGCCUCG 23 8027
BCLllA-7909 + CCCAGGACCUGGUGGAAGGCCUCG 24 8028
BCLllA-7910 + GCGGUGGAGAGACCGUCG 18 8029
BCLllA-7911 + GGCGGUGGAGAGACCGUCG 19 8030
BCLllA-7912 + UGGCGGUGGAGAGACCGUCG 20 8031
BCLllA-7913 + CUGGCGGUGGAGAGACCGUCG 21 8032
BCLllA-7914 + GCUGGCGGUGGAGAGACCGUCG 22 8033
BCLllA-7915 + AGCUGGCGGUGGAGAGACCGUCG 23 8034
BCLllA-7916 + GAGCUGGCGGUGGAGAGACCGUCG 24 8035
BCLllA-7917 + GAGUCUCCGAAGCUAAGG 18 8036
BCLllA-7918 + GGAGUCUCCGAAGCUAAGG 19 8037
BCLllA-7919 + UGGAGUCUCCGAAGCUAAGG 20 8038
BCLllA-7920 + CUGGAGUCUCCGAAGCUAAGG 21 8039
BCLllA-7921 + UCUGGAGUCUCCGAAGCUAAGG 22 8040
BCLllA-7922 + GUCUGGAGUCUCCGAAGCUAAGG 23 8041
BCLllA-7923 + UGUCUGGAGUCUCCGAAGCUAAGG 24 8042
BCLllA-7924 + GGUGGUGGACUAAACAGG 18 8043
BCLllA-7925 + CGGUGGUGGACUAAACAGG 19 8044
BCLllA-6111 + UCGGUGGUGGACUAAACAGG 20 8045
BCLllA-7926 + CUCGGUGGUGGACUAAACAGG 21 8046
BCLllA-7927 + UCUCGGUGGUGGACUAAACAGG 22 8047
BCLllA-7928 + GUCUCGGUGGUGGACUAAACAGG 23 8048
BCLllA-7929 + UGUCUCGGUGGUGGACUAAACAGG 24 8049
BCLllA-7930 + AGGGGGGGCGUCGCCAGG 18 8050
BCLllA-7931 + GAGGGGGGGCGUCGCCAGG 19 8051 BCLllA-7932 + GGAGGGGGGGCGUCGCCAGG 20 8052
BCLllA-7933 + GGGAGGGGGGGCGUCGCCAGG 21 8053
BCLllA-7934 + AGGGAGGGGGGGCGUCGCCAGG 22 8054
BCLllA-7935 + GAGGGAGGGGGGGCGUCGCCAGG 23 8055
BCLllA-7936 + GGAGGGAGGGGGGGCGUCGCCAGG 24 8056
BCLllA-7937 + AAGCGCCCU UCUGCCAGG 18 8057
BCLllA-7938 + AAAGCGCCCUUCUGCCAGG 19 8058
BCLllA-7939 + GAAAGCGCCCUUCUGCCAGG 20 8059
BCLllA-7940 + GGAAAGCGCCCUUCUGCCAGG 21 8060
BCLllA-7941 + UGGAAAGCGCCCUUCUGCCAGG 22 8061
BCLllA-7942 + GUGGAAAGCGCCCUUCUGCCAGG 23 8062
BCLllA-7943 + GGUGGAAAGCGCCCUUCUGCCAGG 24 8063
BCLllA-7944 + AUCGCGGCCGGGGGCAGG 18 8064
BCLllA-7945 + CAUCGCGGCCGGGGGCAGG 19 8065
BCLllA-7946 + GCAUCGCGGCCGGGGGCAGG 20 8066
BCLllA-7947 + GGCAUCGCGGCCGGGGGCAGG 21 8067
BCLllA-7948 + GGGCAUCGCGGCCGGGGGCAGG 22 8068
BCLllA-7949 + UGGGCAUCGCGGCCGGGGGCAGG 23 8069
BCLllA-7950 + U UGGGCAUCGCGGCCGGGGGCAGG 24 8070
BCLllA-7951 + CCGUUCUCCGGGAUCAGG 18 8071
BCLllA-7952 + CCCGUUCUCCGGGAUCAGG 19 8072
BCLllA-7953 + CCCCGUUCUCCGGGAUCAGG 20 8073
BCLllA-7954 + UCCCCGUUCUCCGGGAUCAGG 21 8074
BCLllA-7955 + GUCCCCGUUCUCCGGGAUCAGG 22 8075
BCLllA-7956 + CGUCCCCGUUCUCCGGGAUCAGG 23 8076
BCLllA-7957 + UCGUCCCCGUUCUCCGGGAUCAGG 24 8077
BCLllA-7958 + GAAGAACCUAGAAAGAGG 18 8078
BCLllA-7959 + UGAAGAACCUAGAAAGAGG 19 8079
BCLllA-7960 + GUGAAGAACCUAGAAAGAGG 20 8080
BCLllA-7961 + UGUGAAGAACCUAGAAAGAGG 21 8081
BCLllA-7962 + GUG UGAAGAACCUAGAAAGAGG 22 8082
BCLllA-7963 + UGUGUGAAGAACCUAGAAAGAGG 23 8083
BCLllA-7964 + GUGUGUGAAGAACCUAGAAAGAGG 24 8084
BCLllA-7965 + AGAGGUUGGAGACAGAGG 18 8085
BCLllA-7966 + AAGAGGUUGGAGACAGAGG 19 8086
BCLllA-6113 + AAAGAGGUUGGAGACAGAGG 20 8087
BCLllA-7967 + GAAAGAGGUUGGAGACAGAGG 21 8088
BCLllA-7968 + AGAAAGAGGUUGGAGACAGAGG 22 8089
BCLllA-7969 + UAGAAAGAGGUUGGAGACAGAGG 23 8090
BCLllA-7970 + CU AG AAAG AGG U UGG AG ACAG AGG 24 8091
BCLllA-7971 + AGGGGCGGAUUGCAGAGG 18 8092
BCLllA-7972 + GAGGGGCGGAUUGCAGAGG 19 8093 BCLllA-6114 + GGAGGGGCGGAUUGCAGAGG 20 8094
BCLllA-7973 + AGGAGGGGCGGAUUGCAGAGG 21 8095
BCLllA-7974 + GAGGAGGGGCGGAUUGCAGAGG 22 8096
BCLllA-7975 + GGAGGAGGGGCGGAUUGCAGAGG 23 8097
BCLllA-7976 + GGGAGGAGGGGCGGAU UGCAGAGG 24 8098
BCLllA-7977 + GGCGGAUUGCAGAGGAGG 18 8099
BCLllA-7978 + GGGCGGAUUGCAGAGGAGG 19 8100
BCLllA-7979 + GGGGCGGAUUGCAGAGGAGG 20 8101
BCLllA-7980 + AGGGGCGGAUUGCAGAGGAGG 21 8102
BCLllA-7981 + GAGGGGCGGAUUGCAGAGGAGG 22 8103
BCLllA-7982 + GGAGGGGCGGAUUGCAGAGGAGG 23 8104
BCLllA-7983 + AGGAGGGGCGGAUUGCAGAGGAGG 24 8105
BCLllA-7984 + GAUUGCAGAGGAGGGAGG 18 8106
BCLllA-7985 + GGAUUGCAGAGGAGGGAGG 19 8107
BCLllA-6118 + CGGAUUGCAGAGGAGGGAGG 20 8108
BCLllA-7986 + GCGGAUUGCAGAGGAGGGAGG 21 8109
BCLllA-7987 + GGCGGAUUGCAGAGGAGGGAGG 22 8110
BCLllA-7988 + GGGCGGAUUGCAGAGGAGGGAGG 23 8111
BCLllA-7989 + GGGGCGGAUUGCAGAGGAGGGAGG 24 8112
BCLllA-7990 + CGGGGGCUGGGAGGGAGG 18 8113
BCLllA-7991 + CCGGGGGCUGGGAGGGAGG 19 8114
BCLllA-6119 + ACCGGGGGCUGGGAGGGAGG 20 8115
BCLllA-7992 + GACCGGGGGCUGGGAGGGAGG 21 8116
BCLllA-7993 + UGACCGGGGGCUGGGAGGGAGG 22 8117
BCLllA-7994 + U UGACCGGGGGCUGGGAGGGAGG 23 8118
BCLllA-7995 + CUUGACCGGGGGCUGGGAGGGAGG 24 8119
BCLllA-7996 + UGACCGGGGGCUGGGAGG 18 8120
BCLllA-7997 + U UGACCGGGGGCUGGGAGG 19 8121
BCLllA-7998 + CUUGACCGGGGGCUGGGAGG 20 8122
BCLllA-7999 + ACUUGACCGGGGGCUGGGAGG 21 8123
BCLllA-8000 + GACUUGACCGGGGGCUGGGAGG 22 8124
BCLllA-8001 + GGACUUGACCGGGGGCUGGGAGG 23 8125
BCLllA-8002 + UGGACUUGACCGGGGGCUGGGAGG 24 8126
BCLllA-8003 + CCGUGU UGGGCAUCGCGG 18 8127
BCLllA-8004 + UCCGUGUUGGGCAUCGCGG 19 8128
BCLllA-8005 + CUCCGUGUUGGGCAUCGCGG 20 8129
BCLllA-8006 + UCUCCGUGUUGGGCAUCGCGG 21 8130
BCLllA-8007 + UUCUCCGUGUUGGGCAUCGCGG 22 8131
BCLllA-8008 + GU UCUCCGUGUUGGGCAUCGCGG 23 8132
BCLllA-8009 + CGUUCUCCGUGU UGGGCAUCGCGG 24 8133
BCLllA-8010 + GUUCCGGGGAGCUGGCGG 18 8134
BCLllA-8011 + GGU UCCGGGGAGCUGGCGG 19 8135 BCLllA-6125 + GGGUUCCGGGGAGCUGGCGG 20 8136
BCLllA-8012 + CGGGU UCCGGGGAGCUGGCGG 21 8137
BCLllA-8013 + CCGGGUUCCGGGGAGCUGGCGG 22 8138
BCLllA-8014 + GCCGGGUUCCGGGGAGCUGGCGG 23 8139
BCLllA-8015 + UGCCGGGUUCCGGGGAGCUGGCGG 24 8140
BCLllA-8016 + CCCAGGCGCUCUAUGCGG 18 8141
BCLllA-8017 + CCCCAGGCGCUCUAUGCGG 19 8142
BCLllA-6126 + CCCCCAGGCGCUCUAUGCGG 20 8143
BCLllA-8018 + GCCCCCAGGCGCUCUAUGCGG 21 8144
BCLllA-8019 + CGCCCCCAGGCGCUCUAUGCGG 22 8145
BCLllA-8020 + CCGCCCCCAGGCGCUCUAUGCGG 23 8146
BCLllA-8021 + UCCGCCCCCAGGCGCUCUAUGCGG 24 8147
BCLllA-8022 + GUGGUGGACUAAACAGGG 18 8148
BCLllA-8023 + GGUGGUGGACUAAACAGGG 19 8149
BCLllA-6131 + CGGUGGUGGACUAAACAGGG 20 8150
BCLllA-8024 + UCGGUGGUGGACUAAACAGGG 21 8151
BCLllA-8025 + CUCGGUGGUGGACUAAACAGGG 22 8152
BCLllA-8026 + UCUCGGUGGUGGACUAAACAGGG 23 8153
BCLllA-8027 + GUCUCGGUGGUGGACUAAACAGGG 24 8154
BCLllA-8028 + GCGGAUUGCAGAGGAGGG 18 8155
BCLllA-8029 + GGCGGAUUGCAGAGGAGGG 19 8156
BCLllA-6133 + GGGCGGAUUGCAGAGGAGGG 20 8157
BCLllA-8030 + GGGGCGGAUUGCAGAGGAGGG 21 8158
BCLllA-8031 + AGGGGCGGAUUGCAGAGGAGGG 22 8159
BCLllA-8032 + GAGGGGCGGAUUGCAGAGGAGGG 23 8160
BCLllA-8033 + GGAGGGGCGGAUUGCAGAGGAGGG 24 8161
BCLllA-8034 + GACCGGGGGCUGGGAGGG 18 8162
BCLllA-8035 + UGACCGGGGGCUGGGAGGG 19 8163
BCLllA-6135 + U UGACCGGGGGCUGGGAGGG 20 8164
BCLllA-8036 + CUUGACCGGGGGCUGGGAGGG 21 8165
BCLllA-8037 + ACU UGACCGGGGGCUGGGAGGG 22 8166
BCLllA-8038 + GACUUGACCGGGGGCUGGGAGGG 23 8167
BCLllA-8039 + GGACUUGACCGGGGGCUGGGAGGG 24 8168
BCLllA-8040 + AGUAACCUUUGCAUAGGG 18 8169
BCLllA-8041 + CAGUAACCUUUGCAUAGGG 19 8170
BCLllA-8042 + GCAGUAACCUUUGCAUAGGG 20 8171
BCLllA-8043 + UGCAGUAACCUU UGCAUAGGG 21 8172
BCLllA-8044 + U UGCAGUAACCU UUGCAUAGGG 22 8173
BCLllA-8045 + GUUGCAGUAACCUUUGCAUAGGG 23 8174
BCLllA-8046 + GGU UGCAGUAACCUUUGCAUAGGG 24 8175
BCLllA-8047 + GCCCUGCAUGACGUCGGG 18 8176
BCLllA-8048 + UGCCCUGCAUGACGUCGGG 19 8177 BCLllA-8049 + AUGCCCUGCAUGACGUCGGG 20 8178
BCLllA-8050 + CAUGCCCUGCAUGACGUCGGG 21 8179
BCLllA-8051 + CCAUGCCCUGCAUGACGUCGGG 22 8180
BCLllA-8052 + ACCAUGCCCUGCAUGACGUCGGG 23 8181
BCLllA-8053 + CACCAUGCCCUGCAUGACGUCGGG 24 8182
BCLllA-8054 + CUUGGACUUGACCGGGGG 18 8183
BCLllA-8055 + ACU UGGACUUGACCGGGGG 19 8184
BCLllA-8056 + GACUUGGACUUGACCGGGGG 20 8185
BCLllA-8057 + UGACUUGGACUUGACCGGGGG 21 8186
BCLllA-8058 + AUGACUUGGACUUGACCGGGGG 22 8187
BCLllA-8059 + CAUGACUUGGACUUGACCGGGGG 23 8188
BCLllA-8060 + GCAUGACUUGGACUUGACCGGGGG 24 8189
BCLllA-8061 + ACUUGACCGGGGGCUGGG 18 8190
BCLllA-8062 + GACUUGACCGGGGGCUGGG 19 8191
BCLllA-6146 + GGACUUGACCGGGGGCUGGG 20 8192
BCLllA-8063 + UGGACUUGACCGGGGGCUGGG 21 8193
BCLllA-8064 + UUGGACUUGACCGGGGGCUGGG 22 8194
BCLllA-8065 + CUUGGACUUGACCGGGGGCUGGG 23 8195
BCLllA-8066 + ACU UGGACUUGACCGGGGGCUGGG 24 8196
BCLllA-8067 + CAUGGAGAGGUGGCUGGG 18 8197
BCLllA-8068 + CCAUGGAGAGGUGGCUGGG 19 8198
BCLllA-8069 + CCCAUGGAGAGGUGGCUGGG 20 8199
BCLllA-8070 + UCCCAUGGAGAGGUGGCUGGG 21 8200
BCLllA-8071 + AUCCCAUGGAGAGGUGGCUGGG 22 8201
BCLllA-8072 + AAUCCCAUGGAGAGGUGGCUGGG 23 8202
BCLllA-8073 + GAAUCCCAUGGAGAGGUGGCUGGG 24 8203
BCLllA-8074 + AAACAGGGGGGGAGUGGG 18 8204
BCLllA-8075 + UAAACAGGGGGGGAGUGGG 19 8205
BCLllA-6147 + CUAAACAGGGGGGGAGUGGG 20 8206
BCLllA-8076 + ACU AAACAGGGGGGGAGUGGG 21 8207
BCLllA-8077 + GACUAAACAGGGGGGGAGUGGG 22 8208
BCLllA-8078 + GGACUAAACAGGGGGGGAGUGGG 23 8209
BCLllA-8079 + UGGACUAAACAGGGGGGGAGUGGG 24 8210
BCLllA-8080 + UCCUAGAGAAAUCCAUGG 18 8211
BCLllA-8081 + CUCCUAGAGAAAUCCAUGG 19 8212
BCLllA-6149 + UCUCCUAGAGAAAUCCAUGG 20 8213
BCLllA-8082 + GUCUCCUAGAGAAAUCCAUGG 21 8214
BCLllA-8083 + AGUCUCCUAGAGAAAUCCAUGG 22 8215
BCLllA-8084 + AAGUCUCCUAGAGAAAUCCAUGG 23 8216
BCLllA-8085 + UAAGUCUCCUAGAGAAAUCCAUGG 24 8217
BCLllA-8086 + U UCUCGCCCAGGACCUGG 18 8218
BCLllA-8087 + CUUCUCGCCCAGGACCUGG 19 8219 BCLllA-6152 + GCU UCUCGCCCAGGACCUGG 20 8220
BCLllA-8088 + UGCUUCUCGCCCAGGACCUGG 21 8221
BCLllA-8089 + AUGCUUCUCGCCCAGGACCUGG 22 8222
BCLllA-8090 + UAUGCUUCUCGCCCAGGACCUGG 23 8223
BCLllA-8091 + UUAUGCUUCUCGCCCAGGACCUGG 24 8224
BCLllA-8092 + GGGCGGCUUGCUACCUGG 18 8225
BCLllA-8093 + AGGGCGGCUUGCUACCUGG 19 8226
BCLllA-8094 + AAGGGCGGCUUGCUACCUGG 20 8227
BCLllA-8095 + GAAGGGCGGCUUGCUACCUGG 21 8228
BCLllA-8096 + GGAAGGGCGGCUUGCUACCUGG 22 8229
BCLllA-8097 + AGGAAGGGCGGCUUGCUACCUGG 23 8230
BCLllA-8098 + CAGGAAGGGCGGCU UGCUACCUGG 24 8231
BCLllA-8099 + GACUUGACCGGGGGCUGG 18 8232
BCLllA-8100 + GGACUUGACCGGGGGCUGG 19 8233
BCLllA-8101 + UGGACUUGACCGGGGGCUGG 20 8234
BCLllA-8102 + U UGGACUUGACCGGGGGCUGG 21 8235
BCLllA-8103 + CUUGGACUUGACCGGGGGCUGG 22 8236
BCLllA-8104 + ACU UGGACUUGACCGGGGGCUGG 23 8237
BCLllA-8105 + GACUUGGACUUGACCGGGGGCUGG 24 8238
BCLllA-8106 + UAAACAGGGGGGGAGUGG 18 8239
BCLllA-8107 + CUAAACAGGGGGGGAGUGG 19 8240
BCLllA-8108 + ACUAAACAGGGGGGGAGUGG 20 8241
BCLllA-8109 + GACUAAACAGGGGGGGAGUGG 21 8242
BCLllA-8110 + GGACUAAACAGGGGGGGAGUGG 22 8243
BCLllA-8111 + UGGACUAAACAGGGGGGGAGUGG 23 8244
BCLllA-8112 + GUGGACUAAACAGGGGGGGAGUGG 24 8245
BCLllA-8113 + AAUCCCAUGGAGAGGUGG 18 8246
BCLllA-8114 + GAAUCCCAUGGAGAGGUGG 19 8247
BCLllA-8115 + UGAAUCCCAUGGAGAGGUGG 20 8248
BCLllA-8116 + AUGAAUCCCAUGGAGAGGUGG 21 8249
BCLllA-8117 + UAUGAAUCCCAUGGAGAGGUGG 22 8250
BCLllA-8118 + AUAUGAAUCCCAUGGAGAGGUGG 23 8251
BCLllA-8119 + AAUAUGAAUCCCAUGGAGAGGUGG 24 8252
BCLllA-8120 + UGCAAUAUGAAUCCCAUG 18 8253
BCLllA-8121 + CUGCAAUAUGAAUCCCAUG 19 8254
BCLllA-8122 + UCUGCAAUAUGAAUCCCAUG 20 8255
BCLllA-8123 + GUCUGCAAUAUGAAUCCCAUG 21 8256
BCLllA-8124 + UGUCUGCAAUAUGAAUCCCAUG 22 8257
BCLllA-8125 + UUGUCUGCAAUAUGAAUCCCAUG 23 8258
BCLllA-8126 + AUUGUCUGCAAUAUGAAUCCCAUG 24 8259
BCLllA-8127 + CUCCUAGAGAAAUCCAUG 18 8260
BCLllA-8128 + UCUCCUAGAGAAAUCCAUG 19 8261 BCLllA-8129 + GUCUCCUAGAGAAAUCCAUG 20 8262
BCLllA-8130 + AGUCUCCUAGAGAAAUCCAUG 21 8263
BCLllA-8131 + AAGUCUCCUAGAGAAAUCCAUG 22 8264
BCLllA-8132 + UAAGUCUCCUAGAGAAAUCCAUG 23 8265
BCLllA-8133 + CUAAGUCUCCUAGAGAAAUCCAUG 24 8266
BCLllA-8134 + UCGGACUUGACCGUCAUG 18 8267
BCLllA-8135 + GUCGGACUUGACCGUCAUG 19 8268
BCLllA-6164 + CGUCGGACUUGACCGUCAUG 20 8269
BCLllA-8136 + UCGUCGGACUUGACCGUCAUG 21 8270
BCLllA-8137 + GUCGUCGGACUUGACCGUCAUG 22 8271
BCLllA-8138 + CGUCGUCGGACUUGACCGUCAUG 23 8272
BCLllA-8139 + CCGUCGUCGGACU UGACCGUCAUG 24 8273
BCLllA-8140 + CUUCUCGCCCAGGACCUG 18 8274
BCLllA-8141 + GCU UCUCGCCCAGGACCUG 19 8275
BCLllA-8142 + UGCUUCUCGCCCAGGACCUG 20 8276
BCLllA-8143 + AUGCUUCUCGCCCAGGACCUG 21 8277
BCLllA-8144 + UAUGCUUCUCGCCCAGGACCUG 22 8278
BCLllA-8145 + U UAUGCUUCUCGCCCAGGACCUG 23 8279
BCLllA-8146 + CUUAUGCUUCUCGCCCAGGACCUG 24 8280
BCLllA-8147 + AUUCUGCACCUAGUCCUG 18 8281
BCLllA-8148 + CAUUCUGCACCUAGUCCUG 19 8282
BCLllA-8149 + ACAUUCUGCACCUAGUCCUG 20 8283
BCLllA-8150 + GACAUUCUGCACCUAGUCCUG 21 8284
BCLllA-8151 + GGACAUUCUGCACCUAGUCCUG 22 8285
BCLllA-8152 + AGGACAUUCUGCACCUAGUCCUG 23 8286
BCLllA-8153 + AAGGACAUUCUGCACCUAGUCCUG 24 8287
BCLllA-6537 + GU UGUACAUGUGUAGCUG 18 8288
BCLllA-6538 + AGUUGUACAUGUGUAGCUG 19 8289
BCLllA-6539 + AAGUUGUACAUGUGUAGCUG 20 8290
BCLllA-6540 + CAAGUUGUACAUGUGUAGCUG 21 8291
BCLllA-6541 + GCAAGUUGUACAUGUGUAGCUG 22 8292
BCLllA-6542 + UGCAAGUUGUACAUGUGUAGCUG 23 8293
BCLllA-6543 + UUGCAAGUUGUACAUGUGUAGCUG 24 8294
BCLllA-8154 + GAGUACACGUUCUCCGUG 18 8295
BCLllA-8155 + CGAGUACACGUUCUCCGUG 19 8296
BCLllA-8156 + GCGAGUACACGUUCUCCGUG 20 8297
BCLllA-8157 + UGCGAGUACACGU UCUCCGUG 21 8298
BCLllA-8158 + CUGCGAGUACACGUUCUCCGUG 22 8299
BCLllA-8159 + ACUGCGAGUACACGUUCUCCGUG 23 8300
BCLllA-8160 + CACUGCGAGUACACGUUCUCCGUG 24 8301
BCLllA-8161 + CCAGCUCCCCGGGCGGUG 18 8302
BCLllA-8162 + UCCAGCUCCCCGGGCGGUG 19 8303 BCLllA-6177 + GUCCAGCUCCCCGGGCGGUG 20 8304
BCLllA-8163 + CGUCCAGCUCCCCGGGCGGUG 21 8305
BCLllA-8164 + CCGUCCAGCUCCCCGGGCGGUG 22 8306
BCLllA-8165 + UCCGUCCAGCUCCCCGGGCGGUG 23 8307
BCLllA-8166 + CUCCGUCCAGCUCCCCGGGCGGUG 24 8308
BCLllA-8167 + UCCGGGGAGCUGGCGGUG 18 8309
BCLllA-8168 + U UCCGGGGAGCUGGCGGUG 19 8310
BCLllA-8169 + GUUCCGGGGAGCUGGCGGUG 20 8311
BCLllA-8170 + GGU UCCGGGGAGCUGGCGGUG 21 8312
BCLllA-8171 + GGGUUCCGGGGAGCUGGCGGUG 22 8313
BCLllA-8172 + CGGGU UCCGGGGAGCUGGCGGUG 23 8314
BCLllA-8173 + CCGGGUUCCGGGGAGCUGGCGGUG 24 8315
BCLllA-8174 + CCAAGUGAUGUCUCGGUG 18 8316
BCLllA-8175 + UCCAAGUGAUGUCUCGGUG 19 8317
BCLllA-8176 + GUCCAAGUGAUGUCUCGGUG 20 8318
BCLllA-8177 + GGUCCAAGUGAUGUCUCGGUG 21 8319
BCLllA-8178 + GGGUCCAAGUGAUGUCUCGGUG 22 8320
BCLllA-8179 + GGGGUCCAAGUGAUGUCUCGGUG 23 8321
BCLllA-8180 + GGGGGUCCAAGUGAUGUCUCGGUG 24 8322
BCLllA-8181 + AGCUCCCCGGGCGGUGUG 18 8323
BCLllA-8182 + CAGCUCCCCGGGCGGUGUG 19 8324
BCLllA-8183 + CCAGCUCCCCGGGCGGUGUG 20 8325
BCLllA-8184 + UCCAGCUCCCCGGGCGGUGUG 21 8326
BCLllA-8185 + GUCCAGCUCCCCGGGCGGUGUG 22 8327
BCLllA-8186 + CGUCCAGCUCCCCGGGCGGUGUG 23 8328
BCLllA-8187 + CCGUCCAGCUCCCCGGGCGGUGUG 24 8329
BCLllA-8188 + GCCGAAUGGGGGUGUGUG 18 8330
BCLllA-8189 + CGCCGAAUGGGGGUGUGUG 19 8331
BCLllA-8190 + ACGCCGAAUGGGGGUGUGUG 20 8332
BCLllA-8191 + UACGCCGAAUGGGGGUGUGUG 21 8333
BCLllA-8192 + CUACGCCGAAUGGGGGUGUGUG 22 8334
BCLllA-8193 + ACUACGCCGAAUGGGGGUGUGUG 23 8335
BCLllA-8194 + UACUACGCCGAAUGGGGGUGUGUG 24 8336
BCLllA-8195 + GGGAGGAGGGGCGGAU UG 18 8337
BCLllA-8196 + AGGGAGGAGGGGCGGAUUG 19 8338
BCLllA-8197 + GAGGGAGGAGGGGCGGAUUG 20 8339
BCLllA-8198 + GGAGGGAGGAGGGGCGGAUUG 21 8340
BCLllA-8199 + GGGAGGGAGGAGGGGCGGAUUG 22 8341
BCLllA-8200 + UGGGAGGGAGGAGGGGCGGAUUG 23 8342
BCLllA-8201 + CUGGGAGGGAGGAGGGGCGGAUUG 24 8343
BCLllA-8202 + UCGCACAGGUUGCACUUG 18 8344
BCLllA-8203 + GUCGCACAGGUUGCACUUG 19 8345 BCLllA-8204 + GGUCGCACAGGUUGCACUUG 20 8346
BCLllA-8205 + UGGUCGCACAGGUUGCACUUG 21 8347
BCLllA-8206 + GUGGUCGCACAGGUUGCACUUG 22 8348
BCLllA-8207 + CGUGGUCGCACAGGUUGCACUUG 23 8349
BCLllA-8208 + GCGUGGUCGCACAGGUUGCACUUG 24 8350
BCLllA-8209 + ACCAGGUUGCUCUGAAAU 18 8351
BCLllA-8210 + CACCAGGUUGCUCUGAAAU 19 8352
BCLllA-8211 + CCACCAGGU UGCUCUGAAAU 20 8353
BCLllA-8212 + ACCACCAGGUUGCUCUGAAAU 21 8354
BCLllA-8213 + CACCACCAGGU UGCUCUGAAAU 22 8355
BCLllA-8214 + GCACCACCAGGUUGCUCUGAAAU 23 8356
BCLllA-8215 + UGCACCACCAGGUUGCUCUGAAAU 24 8357
BCLllA-8216 + CGGGCCCGGACCACUAAU 18 8358
BCLllA-8217 + CCGGGCCCGGACCACUAAU 19 8359
BCLllA-8218 + CCCGGGCCCGGACCACUAAU 20 8360
BCLllA-8219 + GCCCGGGCCCGGACCACUAAU 21 8361
BCLllA-8220 + UGCCCGGGCCCGGACCACUAAU 22 8362
BCLllA-8221 + CUGCCCGGGCCCGGACCACUAAU 23 8363
BCLllA-8222 + CCUGCCCGGGCCCGGACCACUAAU 24 8364
BCLllA-8223 + GGGCUCUCGAGCUUCCAU 18 8365
BCLllA-8224 + AGGGCUCUCGAGCUUCCAU 19 8366
BCLllA-8225 + AAGGGCUCUCGAGCUUCCAU 20 8367
BCLllA-8226 + UAAGGGCUCUCGAGCUUCCAU 21 8368
BCLllA-8227 + UUAAGGGCUCUCGAGCU UCCAU 22 8369
BCLllA-8228 + CUUAAGGGCUCUCGAGCUUCCAU 23 8370
BCLllA-8229 + ACU UAAGGGCUCUCGAGCUUCCAU 24 8371
BCLllA-8230 + GUCGGACUUGACCGUCAU 18 8372
BCLllA-8231 + CGUCGGACUUGACCGUCAU 19 8373
BCLllA-6186 + UCGUCGGACUUGACCGUCAU 20 8374
BCLllA-8232 + GUCGUCGGACUUGACCGUCAU 21 8375
BCLllA-8233 + CGUCGUCGGACUUGACCGUCAU 22 8376
BCLllA-8234 + CCGUCGUCGGACU UGACCGUCAU 23 8377
BCLllA-8235 + ACCGUCGUCGGACUUGACCGUCAU 24 8378
BCLllA-8236 + AUAGGGCUGGGCCGGCCU 18 8379
BCLllA-8237 + CAUAGGGCUGGGCCGGCCU 19 8380
BCLllA-6198 + GCAUAGGGCUGGGCCGGCCU 20 8381
BCLllA-8238 + UGCAUAGGGCUGGGCCGGCCU 21 8382
BCLllA-8239 + UUGCAUAGGGCUGGGCCGGCCU 22 8383
BCLllA-8240 + U UUGCAUAGGGCUGGGCCGGCCU 23 8384
BCLllA-8241 + CUUUGCAUAGGGCUGGGCCGGCCU 24 8385
BCLllA-8242 + UCUGGAGUCUCCGAAGCU 18 8386
BCLllA-8243 + GUCUGGAGUCUCCGAAGCU 19 8387 BCLllA-8244 + UGUCUGGAGUCUCCGAAGCU 20 8388
BCLllA-8245 + UUGUCUGGAGUCUCCGAAGCU 21 8389
BCLllA-8246 + AUUGUCUGGAGUCUCCGAAGCU 22 8390
BCLllA-8247 + GAUUGUCUGGAGUCUCCGAAGCU 23 8391
BCLllA-8248 + CGAUUGUCUGGAGUCUCCGAAGCU 24 8392
BCLllA-8249 + UCUCGAGCUUGAUGCGCU 18 8393
BCLllA-8250 + UUCUCGAGCUUGAUGCGCU 19 8394
BCLllA-8251 + CUUCUCGAGCUUGAUGCGCU 20 8395
BCLllA-8252 + CCUUCUCGAGCUUGAUGCGCU 21 8396
BCLllA-8253 + UCCU UCUCGAGCUUGAUGCGCU 22 8397
BCLllA-8254 + CUCCUUCUCGAGCUUGAUGCGCU 23 8398
BCLllA-8255 + ACUCCUUCUCGAGCUUGAUGCGCU 24 8399
BCLllA-8256 + UGGACUUGACCGGGGGCU 18 8400
BCLllA-8257 + UUGGACUUGACCGGGGGCU 19 8401
BCLllA-6207 + CUUGGACUUGACCGGGGGCU 20 8402
BCLllA-8258 + ACUUGGACUUGACCGGGGGCU 21 8403
BCLllA-8259 + GACUUGGACUUGACCGGGGGCU 22 8404
BCLllA-8260 + UGACUUGGACUUGACCGGGGGCU 23 8405
BCLllA-8261 + AUGACUUGGACUUGACCGGGGGCU 24 8406
BCLllA-8262 + UCCCAUGGAGAGGUGGCU 18 8407
BCLllA-8263 + AUCCCAUGGAGAGGUGGCU 19 8408
BCLllA-6208 + AAUCCCAUGGAGAGGUGGCU 20 8409
BCLllA-8264 + GAAUCCCAUGGAGAGGUGGCU 21 8410
BCLllA-8265 + UGAAUCCCAUGGAGAGGUGGCU 22 8411
BCLllA-8266 + AUGAAUCCCAUGGAGAGGUGGCU 23 8412
BCLllA-8267 + UAUGAAUCCCAUGGAGAGGUGGCU 24 8413
BCLllA-8268 + GUGCACCACCAGGUUGCU 18 8414
BCLllA-8269 + GGUGCACCACCAGGUUGCU 19 8415
BCLllA-8270 + CGGUGCACCACCAGGUUGCU 20 8416
BCLllA-8271 + CCGGUGCACCACCAGGU UGCU 21 8417
BCLllA-8272 + GCCGGUGCACCACCAGGUUGCU 22 8418
BCLllA-8273 + CGCCGGUGCACCACCAGGU UGCU 23 8419
BCLllA-8274 + GCGCCGGUGCACCACCAGGUUGCU 24 8420
BCLllA-8275 + AAGCUAAGGAAGGGAUCU 18 8421
BCLllA-8276 + GAAGCUAAGGAAGGGAUCU 19 8422
BCLllA-8277 + CGAAGCUAAGGAAGGGAUCU 20 8423
BCLllA-8278 + CCGAAGCUAAGGAAGGGAUCU 21 8424
BCLllA-8279 + UCCGAAGCUAAGGAAGGGAUCU 22 8425
BCLllA-8280 + CUCCGAAGCUAAGGAAGGGAUCU 23 8426
BCLllA-8281 + UCUCCGAAGCUAAGGAAGGGAUCU 24 8427
BCLllA-8282 + GGCGAUUGUCUGGAGUCU 18 8428
BCLllA-8283 + AGGCGAUUGUCUGGAGUCU 19 8429 BCLllA-8284 + AAGGCGAUUGUCUGGAGUCU 20 8430
BCLllA-8285 + AAAGGCGAUUGUCUGGAGUCU 21 8431
BCLllA-8286 + AAAAGGCGAUUGUCUGGAGUCU 22 8432
BCLllA-8287 + CAAAAGGCGAUUGUCUGGAGUCU 23 8433
BCLllA-8288 + GCAAAAGGCGAUUGUCUGGAGUCU 24 8434
BCLllA-8289 + CCUCCUCGUCCCCGUUCU 18 8435
BCLllA-8290 + UCCUCCUCGUCCCCGUUCU 19 8436
BCLllA-8291 + U UCCUCCUCGUCCCCGU UCU 20 8437
BCLllA-8292 + CUUCCUCCUCGUCCCCGUUCU 21 8438
BCLllA-8293 + UCUUCCUCCUCGUCCCCGU UCU 22 8439
BCLllA-8294 + CUCUUCCUCCUCGUCCCCGUUCU 23 8440
BCLllA-8295 + CCUCUUCCUCCUCGUCCCCGUUCU 24 8441
BCLllA-8296 + AG CG CAAAC U CCCGUUCU 18 8442
BCLllA-8297 + AAGCGCAAACUCCCGUUCU 19 8443
BCLllA-8298 + GAAGCGCAAACUCCCGUUCU 20 8444
BCLllA-8299 + AGAAGCGCAAACUCCCGUUCU 21 8445
BCLllA-8300 + GAGAAGCGCAAACUCCCGUUCU 22 8446
BCLllA-8301 + GGAGAAGCGCAAACUCCCGUUCU 23 8447
BCLllA-8302 + UGGAGAAGCGCAAACUCCCGUUCU 24 8448
BCLllA-8303 + GGGGGCU UCAAAUU UUCU 18 8449
BCLllA-8304 + UGGGGGCUUCAAAUUU UCU 19 8450
BCLllA-8305 + CUGGGGGCUUCAAAUUUUCU 20 8451
BCLllA-8306 + CCUGGGGGCUUCAAAUUUUCU 21 8452
BCLllA-8307 + CCCUGGGGGCUUCAAAUUUUCU 22 8453
BCLllA-8308 + CCCCUGGGGGCU UCAAAUUUUCU 23 8454
BCLllA-8309 + ACCCCUGGGGGCUUCAAAUUUUCU 24 8455
BCLllA-8310 + AAGAACCUAGAAAGAGGU 18 8456
BCLllA-8311 + GAAGAACCUAGAAAGAGGU 19 8457
BCLllA-6224 + UGAAGAACCUAGAAAGAGGU 20 8458
BCLllA-8312 + GUGAAGAACCUAGAAAGAGGU 21 8459
BCLllA-8313 + UGUGAAGAACCUAGAAAGAGGU 22 8460
BCLllA-8314 + GUGUGAAGAACCUAGAAAGAGGU 23 8461
BCLllA-8315 + UGUGUGAAGAACCUAGAAAGAGGU 24 8462
BCLllA-8316 + UCCAGCUCCCCGGGCGGU 18 8463
BCLllA-8317 + GUCCAGCUCCCCGGGCGGU 19 8464
BCLllA-8318 + CGUCCAGCUCCCCGGGCGGU 20 8465
BCLllA-8319 + CCGUCCAGCUCCCCGGGCGGU 21 8466
BCLllA-8320 + UCCGUCCAGCUCCCCGGGCGGU 22 8467
BCLllA-8321 + CUCCGUCCAGCUCCCCGGGCGGU 23 8468
BCLllA-8322 + CCUCCGUCCAGCUCCCCGGGCGGU 24 8469
BCLllA-8323 + GAUACCAACCCGCGGGGU 18 8470
BCLllA-8324 + GGAUACCAACCCGCGGGGU 19 8471 BCLllA-8325 + GGGAUACCAACCCGCGGGGU 20 8472
BCLllA-8326 + AGGGAUACCAACCCGCGGGGU 21 8473
BCLllA-8327 + AAGGGAUACCAACCCGCGGGGU 22 8474
BCLllA-8328 + GAAGGGAUACCAACCCGCGGGGU 23 8475
BCLllA-8329 + UGAAGGGAUACCAACCCGCGGGGU 24 8476
BCLllA-8330 + UACGCCGAAUGGGGGUGU 18 8477
BCLllA-8331 + CUACGCCGAAUGGGGGUGU 19 8478
BCLllA-8332 + ACUACGCCGAAUGGGGGUGU 20 8479
BCLllA-8333 + UACUACGCCGAAUGGGGGUGU 21 8480
BCLllA-8334 + GUACUACGCCGAAUGGGGGUGU 22 8481
BCLllA-8335 + GGU ACUACGCCGAAUGGGGGUGU 23 8482
BCLllA-8336 + GGGUACUACGCCGAAUGGGGGUGU 24 8483
BCLllA-8337 + GAGGCAAAAGGCGAUUGU 18 8484
BCLllA-8338 + GGAGGCAAAAGGCGAUUGU 19 8485
BCLllA-8339 + AGGAGGCAAAAGGCGAU UGU 20 8486
BCLllA-8340 + GAGGAGGCAAAAGGCGAUUGU 21 8487
BCLllA-8341 + CGAGGAGGCAAAAGGCGAUUGU 22 8488
BCLllA-8342 + ACGAGGAGGCAAAAGGCGAUUGU 23 8489
BCLllA-8343 + GACGAGGAGGCAAAAGGCGAUUGU 24 8490
BCLllA-8344 + CAAAUUUUCUCAGAACUU 18 8491
BCLllA-8345 + UCAAAUUUUCUCAGAACUU 19 8492
BCLllA-8346 + U UCAAAUUUUCUCAGAACUU 20 8493
BCLllA-8347 + CU U CAAAU U U U CU CAG AACU U 21 8494
BCLllA-8348 + GCU UCAAAUUUUCUCAGAACUU 22 8495
BCLllA-8349 + GGCU UCAAAUUUUCUCAGAACUU 23 8496
BCLllA-8350 + GGGCUUCAAAUUUUCUCAGAACUU 24 8497
BCLllA-8351 + CGCUGCGUCUGCCCUCU U 18 8498
BCLllA-8352 + UCGCUGCGUCUGCCCUCUU 19 8499
BCLllA-8353 + GUCGCUGCGUCUGCCCUCUU 20 8500
BCLllA-8354 + UGUCGCUGCGUCUGCCCUCUU 21 8501
BCLllA-8355 + GUGUCGCUGCGUCUGCCCUCUU 22 8502
BCLllA-8356 + AGUGUCGCUGCGUCUGCCCUCUU 23 8503
BCLllA-8357 + AAGUGUCGCUGCGUCUGCCCUCUU 24 8504
BCLllA-8358 + AGUCGCUGGUGCCGGGUU 18 8505
BCLllA-8359 + AAGUCGCUGGUGCCGGGUU 19 8506
BCLllA-8360 + CAAGUCGCUGGUGCCGGGUU 20 8507
BCLllA-8361 + CCAAGUCGCUGGUGCCGGGUU 21 8508
BCLllA-8362 + ACCAAGUCGCUGGUGCCGGGUU 22 8509
BCLllA-8363 + CACCAAGUCGCUGGUGCCGGGUU 23 8510
BCLllA-8364 + CCACCAAGUCGCUGGUGCCGGGUU 24 8511
BCLllA-8365 + CUGCCCAGCAGCAGCU UU 18 8512
BCLllA-8366 + GCUGCCCAGCAGCAGCU UU 19 8513 BCLllA-8367 + GGCUGCCCAGCAGCAGCUUU 20 8514
BCLllA-8368 + GGGCUGCCCAGCAGCAGCUUU 21 8515
BCLllA-8369 + GGGGCUGCCCAGCAGCAGCUUU 22 8516
BCLllA-8370 + UGGGGCUGCCCAGCAGCAGCUUU 23 8517
BCLllA-8371 + CUGGGGCUGCCCAGCAGCAGCUUU 24 8518
BCLllA-8372 - GGCAGGCCCAGCU C A A A A 18 8519
BCLllA-8373 - GGGCAGGCCCAGCUCAAAA 19 8520
BCLllA-8374 - CGGGCAGGCCCAGCU C A A A A 20 8521
BCLllA-8375 - CCGGGCAGGCCCAGCUCAAAA 21 8522
BCLllA-8376 - CCCGGGCAGGCCCAGCUCAAAA 22 8523
BCLllA-8377 - GCCCGGGCAGGCCCAGCUCAAAA 23 8524
BCLllA-8378 - GGCCCGGGCAGGCCCAGCUCAAAA 24 8525
BCLllA-8379 - UAAGAAUCUACUUAGAAA 18 8526
BCLllA-8380 - U U AAG AAU CU ACU U AG AAA 19 8527
BCLllA-8381 - AUUAAGAAUCUACUUAGAAA 20 8528
BCLllA-8382 - GAUUAAGAAUCUACUUAGAAA 21 8529
BCLllA-8383 - GGAUUAAGAAUCUACUUAGAAA 22 8530
BCLllA-8384 - UGGAUUAAGAAUCUACUUAGAAA 23 8531
BCLllA-8385 - AUGGAUUAAGAAUCUACUUAGAAA 24 8532
BCLllA-8386 - CGGGCAGGCCCAGCUCAA 18 8533
BCLllA-8387 - CCGGGCAGGCCCAGCUCAA 19 8534
BCLllA-8388 - CCCGGGCAGGCCCAGCUCAA 20 8535
BCLllA-8389 - GCCCGGGCAGGCCCAGCUCAA 21 8536
BCLllA-8390 - GGCCCGGGCAGGCCCAGCUCAA 22 8537
BCLllA-8391 - GGGCCCGGGCAGGCCCAGCUCAA 23 8538
BCLllA-8392 - CGGGCCCGGGCAGGCCCAGCUCAA 24 8539
BCLllA-8393 - GACGAGGAAGAGGAAGAA 18 8540
BCLllA-8394 - CGACGAGGAAGAGGAAGAA 19 8541
BCLllA-3947 - ACGACGAGGAAGAGGAAGAA 20 8542
BCLllA-8395 - GACGACGAGGAAGAGGAAGAA 21 8543
BCLllA-8396 - GGACGACGAGGAAGAGGAAGAA 22 8544
BCLllA-8397 - AGGACGACGAGGAAGAGGAAGAA 23 8545
BCLllA-8398 - GAGGACGACGAGGAAGAGGAAGAA 24 8546
BCLllA-8399 - CAACCUGAUCCCGGAGAA 18 8547
BCLllA-8400 - CCAACCUGAUCCCGGAGAA 19 8548
BCLllA-5881 - CCCAACCUGAUCCCGGAGAA 20 8549
BCLllA-8401 - CCCCAACCUGAUCCCGGAGAA 21 8550
BCLllA-8402 - ACCCCAACCUGAUCCCGGAGAA 22 8551
BCLllA-8403 - GACCCCAACCUGAUCCCGGAGAA 23 8552
BCLllA-8404 - CGACCCCAACCUGAUCCCGGAGAA 24 8553
BCLllA-8405 - GGAGCACUCCUCGGAGAA 18 8554
BCLllA-8406 - CGGAGCACUCCUCGGAGAA 19 8555 BCLllA-5882 - UCGGAGCACUCCUCGGAGAA 20 8556
BCLllA-8407 - GUCGGAGCACUCCUCGGAGAA 21 8557
BCLllA-8408 - CGUCGGAGCACUCCUCGGAGAA 22 8558
BCLllA-8409 - UCGUCGGAGCACUCCUCGGAGAA 23 8559
BCLllA-8410 - CUCGUCGGAGCACUCCUCGGAGAA 24 8560
BCLllA-8411 - GAGGAGGACGACGAGGAA 18 8561
BCLllA-8412 - AGAGGAGGACGACGAGGAA 19 8562
BCLllA-3950 - AAGAGGAGGACGACGAGGAA 20 8563
BCLllA-8413 - GAAGAGGAGGACGACGAGGAA 21 8564
BCLllA-8414 - GGAAGAGGAGGACGACGAGGAA 22 8565
BCLllA-8415 - AGGAAGAGGAGGACGACGAGGAA 23 8566
BCLllA-8416 - GAGGAAGAGGAGGACGACGAGGAA 24 8567
BCLllA-8417 - GAGGAAGAAGAGGAGGAA 18 8568
BCLllA-8418 - AGAGGAAGAAGAGGAGGAA 19 8569
BCLllA-3962 - AAGAGGAAGAAGAGGAGGAA 20 8570
BCLllA-8419 - GAAGAGGAAGAAGAGGAGGAA 21 8571
BCLllA-8420 - GGAAGAGGAAGAAGAGGAGGAA 22 8572
BCLllA-8421 - AGGAAGAGGAAGAAGAGGAGGAA 23 8573
BCLllA-8422 - GAGGAAGAGGAAGAAGAGGAGGAA 24 8574
BCLllA-8423 - AACGGGGACGAGGAGGAA 18 8575
BCLllA-8424 - GAACGGGGACGAGGAGGAA 19 8576
BCLllA-3934 - AGAACGGGGACGAGGAGGAA 20 8577
BCLllA-8425 - GAGAACGGGGACGAGGAGGAA 21 8578
BCLllA-8426 - GGAGAACGGGGACGAGGAGGAA 22 8579
BCLllA-8427 - CGGAGAACGGGGACGAGGAGGAA 23 8580
BCLllA-8428 - CCGGAGAACGGGGACGAGGAGGAA 24 8581
BCLllA-8429 - GGCGCAGCGGCACGGGAA 18 8582
BCLllA-8430 - GGGCGCAGCGGCACGGGAA 19 8583
BCLllA-3857 - GGGGCGCAGCGGCACGGGAA 20 8584
BCLllA-8431 - CGGGGCGCAGCGGCACGGGAA 21 8585
BCLllA-8432 - UCGGGGCGCAGCGGCACGGGAA 22 8586
BCLllA-8433 - CUCGGGGCGCAGCGGCACGGGAA 23 8587
BCLllA-8434 - UCUCGGGGCGCAGCGGCACGGGAA 24 8588
BCLllA-8435 - CGGCCGCGAUGCCCAACA 18 8589
BCLllA-8436 - CCGGCCGCGAUGCCCAACA 19 8590
BCLllA-5893 - CCCGGCCGCGAUGCCCAACA 20 8591
BCLllA-8437 - CCCCGGCCGCGAUGCCCAACA 21 8592
BCLllA-8438 - CCCCCGGCCGCGAUGCCCAACA 22 8593
BCLllA-8439 - GCCCCCGGCCGCGAUGCCCAACA 23 8594
BCLllA-8440 - UGCCCCCGGCCGCGAUGCCCAACA 24 8595
BCLllA-8441 - CUACUUAGAAAGCGAACA 18 8596
BCLllA-8442 - U CU ACU U AG AAAG CG AACA 19 8597 BCLllA-5894 - AUCUACUUAGAAAGCGAACA 20 8598
BCLllA-8443 - AAUCUACUUAGAAAGCGAACA 21 8599
BCLllA-8444 - GAAUCUACUUAGAAAGCGAACA 22 8600
BCLllA-8445 - AGAAUCUACUUAGAAAGCGAACA 23 8601
BCLllA-8446 - AAGAAUCUACUUAGAAAGCGAACA 24 8602
BCLllA-8447 - CCCCUGUUUAGUCCACCA 18 8603
BCLllA-8448 - CCCCCUGUUUAGUCCACCA 19 8604
BCLllA-8449 - CCCCCCUGUUUAGUCCACCA 20 8605
BCLllA-8450 - CCCCCCCUGUUUAGUCCACCA 21 8606
BCLllA-8451 - UCCCCCCCUGUUUAGUCCACCA 22 8607
BCLllA-8452 - CUCCCCCCCUGUUUAGUCCACCA 23 8608
BCLllA-8453 - ACUCCCCCCCUGUUUAGUCCACCA 24 8609
BCLllA-8454 - CAUUCGGCGUAGUACCCA 18 8610
BCLllA-8455 - CCAUUCGGCGUAGUACCCA 19 8611
BCLllA-8456 - CCCAUUCGGCGUAGUACCCA 20 8612
BCLllA-8457 - CCCCAUUCGGCGUAGUACCCA 21 8613
BCLllA-8458 - CCCCCAUUCGGCGUAGUACCCA 22 8614
BCLllA-8459 - ACCCCCAUUCGGCGUAGUACCCA 23 8615
BCLllA-8460 - CACCCCCAUUCGGCGUAGUACCCA 24 8616
BCLllA-8461 - GGCCGAGGCCGAGGGCCA 18 8617
BCLllA-8462 - UGGCCGAGGCCGAGGGCCA 19 8618
BCLllA-8463 - CUGGCCGAGGCCGAGGGCCA 20 8619
BCLllA-8464 - CCUGGCCGAGGCCGAGGGCCA 21 8620
BCLllA-8465 - ACCUGGCCGAGGCCGAGGGCCA 22 8621
BCLllA-8466 - CACCUGGCCGAGGCCGAGGGCCA 23 8622
BCLllA-8467 - CCACCUGGCCGAGGCCGAGGGCCA 24 8623
BCLllA-8468 - UUUCUCUUGCAACACGCA 18 8624
BCLllA-8469 - GUUUCUCUUGCAACACGCA 19 8625
BCLllA-8470 - GGUUUCUCUUGCAACACGCA 20 8626
BCLllA-8471 - UGGUUUCUCUUGCAACACGCA 21 8627
BCLllA-8472 - AUGGUUUCUCUUGCAACACGCA 22 8628
BCLllA-8473 - CAUGGUUUCUCUUGCAACACGCA 23 8629
BCLllA-8474 - GCAUGGUUUCUCUUGCAACACGCA 24 8630
BCLllA-8475 - ACUUGGACCCCCACCGCA 18 8631
BCLllA-8476 - CACUUGGACCCCCACCGCA 19 8632
BCLllA-8477 - UCACUUGGACCCCCACCGCA 20 8633
BCLllA-8478 - AUCACUUGGACCCCCACCGCA 21 8634
BCLllA-8479 - CAUCACUUGGACCCCCACCGCA 22 8635
BCLllA-8480 - ACAUCACUUGGACCCCCACCGCA 23 8636
BCLllA-8481 - GACAUCACUUGGACCCCCACCGCA 24 8637
BCLllA-8482 - UCUCGGGGCGCAGCGGCA 18 8638
BCLllA-8483 - AUCUCGGGGCGCAGCGGCA 19 8639 BCLllA-5904 - GAUCUCGGGGCGCAGCGGCA 20 8640
BCLllA-8484 - GGAUCUCGGGGCGCAGCGGCA 21 8641
BCLllA-8485 - GGGAUCUCGGGGCGCAGCGGCA 22 8642
BCLllA-8486 - AGGGAUCUCGGGGCGCAGCGGCA 23 8643
BCLllA-8487 - GAGGGAUCUCGGGGCGCAGCGGCA 24 8644
BCLllA-8488 - AGACUUAGAGAGCUGGCA 18 8645
BCLllA-8489 - GAGACUUAGAGAGCUGGCA 19 8646
BCLllA-5907 - GGAGACUUAGAGAGCUGGCA 20 8647
BCLllA-8490 - AGGAGACUUAGAGAGCUGGCA 21 8648
BCLllA-8491 - UAGGAGACUUAGAGAGCUGGCA 22 8649
BCLllA-8492 - CUAGGAGACUUAGAGAGCUGGCA 23 8650
BCLllA-8493 - UCUAGGAGACUUAGAGAGCUGGCA 24 8651
BCLllA-8494 - GCUCCAUGCAGCACUUCA 18 8652
BCLllA-8495 - AGCUCCAUGCAGCACUUCA 19 8653
BCLllA-8496 - CAGCUCCAUGCAGCACUUCA 20 8654
BCLllA-8497 - UCAGCUCCAUGCAGCACUUCA 21 8655
BCLllA-8498 - CUCAGCUCCAUGCAGCACUUCA 22 8656
BCLllA-8499 - GCUCAGCUCCAUGCAGCACUUCA 23 8657
BCLllA-8500 - UGCUCAGCUCCAUGCAGCACUUCA 24 8658
BCLllA-8501 - UGGUGGCCAAGUUCAAGA 18 8659
BCLllA-8502 - G UGGUGGCCAAG U U CAAGA 19 8660
BCLllA-8503 - CGUGGUGGCCAAGUUCAAGA 20 8661
BCLllA-8504 - CCGUGGUGGCCAAGUUCAAGA 21 8662
BCLllA-8505 - UCCGUGGUGGCCAAGUUCAAGA 22 8663
BCLllA-8506 - GUCCGUGGUGGCCAAGUUCAAGA 23 8664
BCLllA-8507 - AGUCCGUGGUGGCCAAGUUCAAGA 24 8665
BCLllA-8508 - AGGAGGAGCUGACGGAGA 18 8666
BCLllA-8509 - GAGGAGGAGCUGACGGAGA 19 8667
BCLllA-8510 - GGAGGAGGAGCUGACGGAGA 20 8668
BCLllA-8511 - AGGAGGAGGAGCUGACGGAGA 21 8669
BCLllA-8512 - GAGGAGGAGGAGCUGACGGAGA 22 8670
BCLllA-8513 - GGAGGAGGAGGAGCUGACGGAGA 23 8671
BCLllA-8514 - AGGAGGAGGAGGAGCUGACGGAGA 24 8672
BCLllA-8515 - CCAACCUGAUCCCGGAGA 18 8673
BCLllA-8516 - CCCAACCUGAUCCCGGAGA 19 8674
BCLllA-8517 - CCCCAACCUGAUCCCGGAGA 20 8675
BCLllA-8518 - ACCCCAACCUGAUCCCGGAGA 21 8676
BCLllA-8519 - GACCCCAACCUGAUCCCGGAGA 22 8677
BCLllA-8520 - CGACCCCAACCUGAUCCCGGAGA 23 8678
BCLllA-8521 - ACGACCCCAACCUGAUCCCGGAGA 24 8679
BCLllA-8522 - CGGAGCACUCCUCGGAGA 18 8680
BCLllA-8523 - UCGGAGCACUCCUCGGAGA 19 8681 BCLllA-8524 - GUCGGAGCACUCCUCGGAGA 20 8682
BCLllA-8525 - CGUCGGAGCACUCCUCGGAGA 21 8683
BCLllA-8526 - UCGUCGGAGCACUCCUCGGAGA 22 8684
BCLllA-8527 - CUCGUCGGAGCACUCCUCGGAGA 23 8685
BCLllA-8528 - CCUCGUCGGAGCACUCCUCGGAGA 24 8686
BCLllA-8529 - UACCAGGAUCAGUAUCGA 18 8687
BCLllA-8530 - AUACCAGGAUCAGUAUCGA 19 8688
BCLllA-8531 - AAUACCAGGAUCAGUAUCGA 20 8689
BCLllA-8532 - GAAUACCAGGAUCAGUAUCGA 21 8690
BCLllA-8533 - AGAAUACCAGGAUCAGUAUCGA 22 8691
BCLllA-8534 - AAGAAUACCAGGAUCAGUAUCGA 23 8692
BCLllA-8535 - UAAGAAUACCAGGAUCAGUAUCGA 24 8693
BCLllA-8536 - UGUGUGGCAGUUUUCGGA 18 8694
BCLllA-8537 - AUGUGUGGCAGUUUUCGGA 19 8695
BCLllA-5929 - GAUGUGUGGCAGUUUUCGGA 20 8696
BCLllA-8538 - AGAUGUGUGGCAGUUUUCGGA 21 8697
BCLllA-8539 - AAGAUGUGUGGCAGUUUUCGGA 22 8698
BCLllA-8540 - CAAGAUGUGUGGCAGUUUUCGGA 23 8699
BCLllA-8541 - UCAAGAUGUGUGGCAGUUUUCGGA 24 8700
BCLllA-8542 - ACCGCCCGGGGAGCUGGA 18 8701
BCLllA-8543 - CACCGCCCGGGGAGCUGGA 19 8702
BCLllA-5933 - ACACCGCCCGGGGAGCUGGA 20 8703
BCLllA-8544 - CACACCGCCCGGGGAGCUGGA 21 8704
BCLllA-8545 - CCACACCGCCCGGGGAGCUGGA 22 8705
BCLllA-8546 - UCCACACCGCCCGGGGAGCUGGA 23 8706
BCLllA-8547 - CUCCACACCGCCCGGGGAGCUGGA 24 8707
BCLllA-8548 - AGCGGCACGGGAAGUGGA 18 8708
BCLllA-8549 - CAGCGGCACGGGAAGUGGA 19 8709
BCLllA-5934 - GCAGCGGCACGGGAAGUGGA 20 8710
BCLllA-8550 - CGCAGCGGCACGGGAAGUGGA 21 8711
BCLllA-8551 - GCGCAGCGGCACGGGAAGUGGA 22 8712
BCLllA-8552 - GGCGCAGCGGCACGGGAAGUGGA 23 8713
BCLllA-8553 - GGGCGCAGCGGCACGGGAAGUGGA 24 8714
BCLllA-8554 - AGGAGGAGGAGGAGCUGA 18 8715
BCLllA-8555 - GAGGAGGAGGAGGAGCUGA 19 8716
BCLllA-5938 - AGAGGAGGAGGAGGAGCUGA 20 8717
BCLllA-8556 - AAGAGGAGGAGGAGGAGCUGA 21 8718
BCLllA-8557 - GAAGAGGAGGAGGAGGAGCUGA 22 8719
BCLllA-8558 - GGAAGAGGAGGAGGAGGAGCUGA 23 8720
BCLllA-8559 - AGGAAGAGGAGGAGGAGGAGCUGA 24 8721
BCLllA-8560 - GGUUGAAUCCAAUGGCUA 18 8722
BCLllA-8561 - CGGUUGAAUCCAAUGGCUA 19 8723 BCLllA-5944 - GCGGUUGAAUCCAAUGGCUA 20 8724
BCLllA-8562 - UGCGGUUGAAUCCAAUGGCUA 21 8725
BCLllA-8563 - CUGCGGUUGAAUCCAAUGGCUA 22 8726
BCLllA-8564 - GCUGCGGUUGAAUCCAAUGGCUA 23 8727
BCLllA-8565 - UGCUGCGGUUGAAUCCAAUGGCUA 24 8728
BCLllA-8566 - AGAAUACCAGGAUCAGUA 18 8729
BCLllA-8567 - AAGAAUACCAGGAUCAGUA 19 8730
BCLllA-8568 - UAAGAAUACCAGGAUCAGUA 20 8731
BCLllA-8569 - CUAAGAAUACCAGGAUCAGUA 21 8732
BCLllA-8570 - G CU AAG AAU ACCAGG AU CAG U A 22 8733
BCLllA-8571 - UGCU AAGAAUACCAGGAUCAGUA 23 8734
BCLllA-8572 - CUGCUAAGAAUACCAGGAUCAGUA 24 8735
BCLllA-8573 - AUUUCUCUAGGAGACUUA 18 8736
BCLllA-8574 - GAUUUCUCUAGGAGACUUA 19 8737
BCLllA-8575 - GGAUUUCUCUAGGAGACUUA 20 8738
BCLllA-8576 - UGGAUUUCUCUAGGAGACUUA 21 8739
BCLllA-8577 - AUGGAUUUCUCUAGGAGACUUA 22 8740
BCLllA-8578 - CAUGGAUUUCUCUAGGAGACUUA 23 8741
BCLllA-8579 - CCAUGGAUUUCUCUAGGAGACUUA 24 8742
BCLllA-8580 - CCGGCCGCGAUGCCCAAC 18 8743
BCLllA-8581 - CCCGGCCGCGAUGCCCAAC 19 8744
BCLllA-8582 - CCCCGGCCGCGAUGCCCAAC 20 8745
BCLllA-8583 - CCCCCGGCCGCGAUGCCCAAC 21 8746
BCLllA-8584 - GCCCCCGGCCGCGAUGCCCAAC 22 8747
BCLllA-8585 - UGCCCCCGGCCGCGAUGCCCAAC 23 8748
BCLllA-8586 - CUGCCCCCGGCCGCGAUGCCCAAC 24 8749
BCLllA-8587 - AACCUGAUCCCGGAGAAC 18 8750
BCLllA-8588 - CAACCUGAUCCCGGAGAAC 19 8751
BCLllA-5948 - CCAACCUGAUCCCGGAGAAC 20 8752
BCLllA-8589 - CCCAACCUGAUCCCGGAGAAC 21 8753
BCLllA-8590 - CCCCAACCUGAUCCCGGAGAAC 22 8754
BCLllA-8591 - ACCCCAACCUGAUCCCGGAGAAC 23 8755
BCLllA-8592 - GACCCCAACCUGAUCCCGGAGAAC 24 8756
BCLllA-8593 - UCUACUUAGAAAGCGAAC 18 8757
BCLllA-8594 - AUCUACUUAGAAAGCGAAC 19 8758
BCLllA-8595 - AAUCUACUUAGAAAGCGAAC 20 8759
BCLllA-8596 - GAAUCUACUUAGAAAGCGAAC 21 8760
BCLllA-8597 - AGAAUCUACUUAGAAAGCGAAC 22 8761
BCLllA-8598 - AAGAAUCUACUUAGAAAGCGAAC 23 8762
BCLllA-8599 - UAAGAAUCUACUUAGAAAGCGAAC 24 8763
BCLllA-8600 - GAGGCGGCGCGCCACCAC 18 8764
BCLllA-8601 - GGAGGCGGCGCGCCACCAC 19 8765 BCLllA-8602 - UGGAGGCGGCGCGCCACCAC 20 8766
BCLllA-8603 - CUGGAGGCGGCGCGCCACCAC 21 8767
BCLllA-8604 - CCUGGAGGCGGCGCGCCACCAC 22 8768
BCLllA-8605 - GCCUGGAGGCGGCGCGCCACCAC 23 8769
BCLllA-8606 - AGCCUGGAGGCGGCGCGCCACCAC 24 8770
BCLllA-8607 - GUGCACCGGCGCAGCCAC 18 8771
BCLllA-8608 - GGUGCACCGGCGCAGCCAC 19 8772
BCLllA-8609 - UGGUGCACCGGCGCAGCCAC 20 8773
BCLllA-8610 - GUGGUGCACCGGCGCAGCCAC 21 8774
BCLllA-8611 - GGUGGUGCACCGGCGCAGCCAC 22 8775
BCLllA-8612 - UGGUGGUGCACCGGCGCAGCCAC 23 8776
BCLllA-8613 - CUGGUGGUGCACCGGCGCAGCCAC 24 8777
BCLllA-8614 - AG CA AG C UGAAG CG CCAC 18 8778
BCLllA-8615 - CAG CA AG C UGAAG CG CC AC 19 8779
BCLllA-8616 - CCAGCAAGCUGAAGCGCCAC 20 8780
BCLllA-8617 - GCCAGCAAGCUGAAGCGCCAC 21 8781
BCLllA-8618 - GG CCAGCAAG CU G AAG CGCCAC 22 8782
BCLllA-8619 - AGGCCAGCAAGCUGAAGCGCCAC 23 8783
BCLllA-8620 - CAGGCCAGCAAGCUGAAGCGCCAC 24 8784
BCLllA-8621 - GCCGAGGCCGAGGGCCAC 18 8785
BCLllA-8622 - GGCCGAGGCCGAGGGCCAC 19 8786
BCLllA-5951 - UGGCCGAGGCCGAGGGCCAC 20 8787
BCLllA-8623 - CUGGCCGAGGCCGAGGGCCAC 21 8788
BCLllA-8624 - CCUGGCCGAGGCCGAGGGCCAC 22 8789
BCLllA-8625 - ACCUGGCCGAGGCCGAGGGCCAC 23 8790
BCLllA-8626 - CACCUGGCCGAGGCCGAGGGCCAC 24 8791
BCLllA-8627 - CUCGGGGCGCAGCGGCAC 18 8792
BCLllA-8628 - UCUCGGGGCGCAGCGGCAC 19 8793
BCLllA-5953 - AUCUCGGGGCGCAGCGGCAC 20 8794
BCLllA-8629 - GAUCUCGGGGCGCAGCGGCAC 21 8795
BCLllA-8630 - GGAUCUCGGGGCGCAGCGGCAC 22 8796
BCLllA-8631 - GGGAUCUCGGGGCGCAGCGGCAC 23 8797
BCLllA-8632 - AGGGAUCUCGGGGCGCAGCGGCAC 24 8798
BCLllA-8633 - CCACCACCGAGACAUCAC 18 8799
BCLllA-8634 - UCCACCACCGAGACAUCAC 19 8800
BCLllA-8635 - G U CCACCACCG AG ACAU CAC 20 8801
BCLllA-8636 - AGUCCACCACCGAGACAUCAC 21 8802
BCLllA-8637 - UAGUCCACCACCGAGACAUCAC 22 8803
BCLllA-8638 - UUAGUCCACCACCGAGACAUCAC 23 8804
BCLllA-8639 - UUUAGUCCACCACCGAGACAUCAC 24 8805
BCLllA-8640 - GAGGAAGAGGAGGACGAC 18 8806
BCLllA-8641 - GGAGGAAGAGGAGGACGAC 19 8807 BCLllA-3949 - AGGAGGAAGAGGAGGACGAC 20 8808
BCLllA-8642 - GAGGAGGAAGAGGAGGACGAC 21 8809
BCLllA-8643 - CGAGGAGGAAGAGGAGGACGAC 22 8810
BCLllA-8644 - ACGAGGAGGAAGAGGAGGACGAC 23 8811
BCLllA-8645 - GACGAGGAGGAAGAGGAGGACGAC 24 8812
BCLllA-8646 - GUCGUGGGCGUGGGCGAC 18 8813
BCLllA-8647 - GGUCGUGGGCGUGGGCGAC 19 8814
BCLllA-8648 - CGGUCGUGGGCGUGGGCGAC 20 8815
BCLllA-8649 - GCGGUCGUGGGCGUGGGCGAC 21 8816
BCLllA-8650 - CGCGGUCGUGGGCGUGGGCGAC 22 8817
BCLllA-8651 - GCGCGGUCGUGGGCGUGGGCGAC 23 8818
BCLllA-8652 - GGCGCGGUCGUGGGCGUGGGCGAC 24 8819
BCLllA-8653 - AUCCCGGAGAACGGGGAC 18 8820
BCLllA-8654 - GAUCCCGGAGAACGGGGAC 19 8821
BCLllA-8655 - UGAUCCCGGAGAACGGGGAC 20 8822
BCLllA-8656 - CUGAUCCCGGAGAACGGGGAC 21 8823
BCLllA-8657 - CCUGAUCCCGGAGAACGGGGAC 22 8824
BCLllA-8658 - ACCUGAUCCCGGAGAACGGGGAC 23 8825
BCLllA-8659 - AACCUGAUCCCGGAGAACGGGGAC 24 8826
BCLllA-8660 - UGGAGGCGGCGCGCCACC 18 8827
BCLllA-8661 - CUGGAGGCGGCGCGCCACC 19 8828
BCLllA-8662 - CCUGGAGGCGGCGCGCCACC 20 8829
BCLllA-8663 - GCCUGGAGGCGGCGCGCCACC 21 8830
BCLllA-8664 - AGCCUGGAGGCGGCGCGCCACC 22 8831
BCLllA-8665 - GAGCCUGGAGGCGGCGCGCCACC 23 8832
BCLllA-8666 - UGAGCCUGGAGGCGGCGCGCCACC 24 8833
BCLllA-8667 - CCCAUUCGGCGUAGUACC 18 8834
BCLllA-8668 - CCCCAUUCGGCGUAGUACC 19 8835
BCLllA-8669 - CCCCCAUUCGGCGUAGUACC 20 8836
BCLllA-8670 - ACCCCCAUUCGGCGUAGUACC 21 8837
BCLllA-8671 - CACCCCCAUUCGGCGUAGUACC 22 8838
BCLllA-8672 - ACACCCCCAUUCGGCGUAGUACC 23 8839
BCLllA-8673 - CACACCCCCAUUCGGCGUAGUACC 24 8840
BCLllA-8674 - GAGAAAAUUUGAAGCCCC 18 8841
BCLllA-8675 - UGAGAAAAUUUGAAGCCCC 19 8842
BCLllA-8676 - CUGAGAAAAUUUGAAGCCCC 20 8843
BCLllA-8677 - UCUGAGAAAAUUUGAAGCCCC 21 8844
BCLllA-8678 - UUCUGAGAAAAUUUGAAGCCCC 22 8845
BCLllA-8679 - GU UCUGAGAAAAUUUGAAGCCCC 23 8846
BCLllA-8680 - AGUUCUGAGAAAAUUUGAAGCCCC 24 8847
BCLllA-8681 - CGCUUCUCCACACCGCCC 18 8848
BCLllA-8682 - GCGCUUCUCCACACCGCCC 19 8849 BCLllA-5976 - UGCGCUUCUCCACACCGCCC 20 8850
BCLllA-8683 - UUGCGCUUCUCCACACCGCCC 21 8851
BCLllA-8684 - UUUGCGCUUCUCCACACCGCCC 22 8852
BCLllA-8685 - GUUUGCGCUUCUCCACACCGCCC 23 8853
BCLllA-8686 - AGUUUGCGCUUCUCCACACCGCCC 24 8854
BCLllA-8687 - UCUCCACCGCCAGCUCCC 18 8855
BCLllA-8688 - CUCUCCACCGCCAGCUCCC 19 8856
BCLllA-5982 - UCUCUCCACCGCCAGCUCCC 20 8857
BCLllA-8689 - GUCUCUCCACCGCCAGCUCCC 21 8858
BCLllA-8690 - GGUCUCUCCACCGCCAGCUCCC 22 8859
BCLllA-8691 - CGGUCUCUCCACCGCCAGCUCCC 23 8860
BCLllA-8692 - ACGGUCUCUCCACCGCCAGCUCCC 24 8861
BCLllA-8693 - ACGGCUUCGGGCUGAGCC 18 8862
BCLllA-8694 - UACGGCUUCGGGCUGAGCC 19 8863
BCLllA-5986 - CUACGGCUUCGGGCUGAGCC 20 8864
BCLllA-8695 - ACUACGGCUUCGGGCUGAGCC 21 8865
BCLllA-8696 - GACUACGGCUUCGGGCUGAGCC 22 8866
BCLllA-8697 - GGACU ACGGCUUCGGGCUGAGCC 23 8867
BCLllA-8698 - UGGACUACGGCUUCGGGCUGAGCC 24 8868
BCLllA-8699 - GCGCUUCUCCACACCGCC 18 8869
BCLllA-8700 - UGCGCUUCUCCACACCGCC 19 8870
BCLllA-5987 - UUGCGCUUCUCCACACCGCC 20 8871
BCLllA-8701 - UUUGCGCUUCUCCACACCGCC 21 8872
BCLllA-8702 - GUUUGCGCUUCUCCACACCGCC 22 8873
BCLllA-8703 - AGUUUGCGCUUCUCCACACCGCC 23 8874
BCLllA-8704 - GAGUUUGCGCUUCUCCACACCGCC 24 8875
BCLllA-8705 - CCCACCGCAUAGAGCGCC 18 8876
BCLllA-8706 - CCCCACCGCAUAGAGCGCC 19 8877
BCLllA-5988 - CCCCCACCGCAUAGAGCGCC 20 8878
BCLllA-8707 - ACCCCCACCGCAUAGAGCGCC 21 8879
BCLllA-8708 - GACCCCCACCGCAUAGAGCGCC 22 8880
BCLllA-8709 - GGACCCCCACCGCAUAGAGCGCC 23 8881
BCLllA-8710 - UGGACCCCCACCGCAUAGAGCGCC 24 8882
BCLllA-8711 - GGCCACCUGGCCGAGGCC 18 8883
BCLllA-8712 - CGGCCACCUGGCCGAGGCC 19 8884
BCLllA-8713 - GCGGCCACCUGGCCGAGGCC 20 8885
BCLllA-8714 - CGCGGCCACCUGGCCGAGGCC 21 8886
BCLllA-8715 - GCGCGGCCACCUGGCCGAGGCC 22 8887
BCLllA-8716 - AGCGCGGCCACCUGGCCGAGGCC 23 8888
BCLllA-8717 - AAGCGCGGCCACCUGGCCGAGGCC 24 8889
BCLllA-8718 - UCCCCGGGCGAGUCGGCC 18 8890
BCLllA-8719 - CUCCCCGGGCGAGUCGGCC 19 8891 BCLllA-8720 - GCUCCCCGGGCGAGUCGGCC 20 8892
BCLllA-8721 - UGCUCCCCGGGCGAGUCGGCC 21 8893
BCLllA-8722 - CUGCUCCCCGGGCGAGUCGGCC 22 8894
BCLllA-8723 - GCUGCUCCCCGGGCGAGUCGGCC 23 8895
BCLllA-8724 - GGCUGCUCCCCGGGCGAGUCGGCC 24 8896
BCLllA-8725 - ACGACCCCAACCUGAUCC 18 8897
BCLllA-8726 - AACGACCCCAACCUGAUCC 19 8898
BCLllA-6004 - GAACGACCCCAACCUGAUCC 20 8899
BCLllA-8727 - AGAACGACCCCAACCUGAUCC 21 8900
BCLllA-8728 - GAGAACGACCCCAACCUGAUCC 22 8901
BCLllA-8729 - CGAGAACGACCCCAACCUGAUCC 23 8902
BCLllA-8730 - GCGAGAACGACCCCAACCUGAUCC 24 8903
BCLllA-8731 - UCCUCGUCGGAGCACUCC 18 8904
BCLllA-8732 - CUCCUCGUCGGAGCACUCC 19 8905
BCLllA-8733 - CCUCCUCGUCGGAGCACUCC 20 8906
BCLllA-8734 - GCCUCCUCGUCGGAGCACUCC 21 8907
BCLllA-8735 - UGCCUCCUCGUCGGAGCACUCC 22 8908
BCLllA-8736 - UUGCCUCCUCGUCGGAGCACUCC 23 8909
BCLllA-8737 - UUUGCCUCCUCGUCGGAGCACUCC 24 8910
BCLllA-8738 - CUCUCCACCGCCAGCUCC 18 8911
BCLllA-8739 - UCUCUCCACCGCCAGCUCC 19 8912
BCLllA-8740 - GUCUCUCCACCGCCAGCUCC 20 8913
BCLllA-8741 - GGUCUCUCCACCGCCAGCUCC 21 8914
BCLllA-8742 - CGGUCUCUCCACCGCCAGCUCC 22 8915
BCLllA-8743 - ACGGUCUCUCCACCGCCAGCUCC 23 8916
BCLllA-8744 - GACGGUCUCUCCACCGCCAGCUCC 24 8917
BCLllA-8745 - AAUGGCCGCGGCUGCUCC 18 8918
BCLllA-8746 - UAAUGGCCGCGGCUGCUCC 19 8919
BCLllA-8747 - UUAAUGGCCGCGGCUGCUCC 20 8920
BCLllA-8748 - GUUAAUGGCCGCGGCUGCUCC 21 8921
BCLllA-8749 - UGUUAAUGGCCGCGGCUGCUCC 22 8922
BCLllA-8750 - CUGUUAAUGGCCGCGGCUGCUCC 23 8923
BCLllA-8751 - ACUGUUAAUGGCCGCGGCUGCUCC 24 8924
BCLllA-8752 - CUUCCCAGCCACCUCUCC 18 8925
BCLllA-8753 - CCUUCCCAGCCACCUCUCC 19 8926
BCLllA-8754 - UCCUUCCCAGCCACCUCUCC 20 8927
BCLllA-8755 - GUCCUUCCCAGCCACCUCUCC 21 8928
BCLllA-8756 - UGUCCUUCCCAGCCACCUCUCC 22 8929
BCLllA-8757 - AUGUCCUUCCCAGCCACCUCUCC 23 8930
BCLllA-8758 - AAUGUCCUUCCCAGCCACCUCUCC 24 8931
BCLllA-8759 - UCUCUAAGCGCAUCAAGC 18 8932
BCLllA-8760 - UUCUCUAAGCGCAUCAAGC 19 8933 BCLllA-8761 - CUUCUCUAAGCGCAUCAAGC 20 8934
BCLllA-8762 - CCUUCUCUAAGCGCAUCAAGC 21 8935
BCLllA-8763 - CCCUUCUCUAAGCGCAUCAAGC 22 8936
BCLllA-8764 - CCCCUUCUCUAAGCGCAUCAAGC 23 8937
BCLllA-8765 - GCCCCUUCUCUAAGCGCAUCAAGC 24 8938
BCLllA-8766 - CAGUUUUCGGAUGGAAGC 18 8939
BCLllA-8767 - GCAGUUUUCGGAUGGAAGC 19 8940
BCLllA-8768 - GGCAGUUUUCGGAUGGAAGC 20 8941
BCLllA-8769 - UGGCAGUUUUCGGAUGGAAGC 21 8942
BCLllA-8770 - GUGGCAGUUUUCGGAUGGAAGC 22 8943
BCLllA-8771 - UGUGGCAGUUUUCGGAUGGAAGC 23 8944
BCLllA-8772 - GUGUGGCAGUUUUCGGAUGGAAGC 24 8945
BCLllA-8773 - G U G G C C A AG UUCAAGAGC 18 8946
BCLllA-8774 - GGUGGCCAAGUUCAAGAGC 19 8947
BCLllA-8775 - UGGUGGCCAAGUUCAAGAGC 20 8948
BCLllA-8776 - G UGGUGGCCAAG U U CAAG AG C 21 8949
BCLllA-8777 - CGUGGUGGCCAAGUUCAAGAGC 22 8950
BCLllA-8778 - CCGUGGUGGCCAAGUUCAAGAGC 23 8951
BCLllA-8779 - UCCGUGGUGGCCAAGUUCAAGAGC 24 8952
BCLllA-8780 - GAGGAGCUGACGGAGAGC 18 8953
BCLllA-8781 - GGAGGAGCUGACGGAGAGC 19 8954
BCLllA-8782 - AGGAGGAGCUGACGGAGAGC 20 8955
BCLllA-8783 - GAGGAGGAGCUGACGGAGAGC 21 8956
BCLllA-8784 - GGAGGAGGAGCUGACGGAGAGC 22 8957
BCLllA-8785 - AGGAGGAGGAGCUGACGGAGAGC 23 8958
BCLllA-8786 - GAGGAGGAGGAGCUGACGGAGAGC 24 8959
BCLllA-8787 - UACGGCUUCGGGCUGAGC 18 8960
BCLllA-8788 - CUACGGCUUCGGGCUGAGC 19 8961
BCLllA-8789 - ACUACGGCUUCGGGCUGAGC 20 8962
BCLllA-8790 - GACUACGGCUUCGGGCUGAGC 21 8963
BCLllA-8791 - GGACUACGGCUUCGGGCUGAGC 22 8964
BCLllA-8792 - UGGACUACGGCUUCGGGCUGAGC 23 8965
BCLllA-8793 - GUGGACUACGGCUUCGGGCUGAGC 24 8966
BCLllA-8794 - UGCGCUUCUCCACACCGC 18 8967
BCLllA-8795 - UUGCGCUUCUCCACACCGC 19 8968
BCLllA-8796 - UUUGCGCUUCUCCACACCGC 20 8969
BCLllA-8797 - GUUUGCGCUUCUCCACACCGC 21 8970
BCLllA-8798 - AGUUUGCGCUUCUCCACACCGC 22 8971
BCLllA-8799 - GAGUUUGCGCUUCUCCACACCGC 23 8972
BCLllA-8800 - GGAGUUUGCGCUUCUCCACACCGC 24 8973
BCLllA-8801 - CCCCACCGCAUAGAGCGC 18 8974
BCLllA-8802 - CCCCCACCGCAUAGAGCGC 19 8975 BCLllA-8803 - ACCCCCACCGCAUAGAGCGC 20 8976
BCLllA-8804 - GACCCCCACCGCAUAGAGCGC 21 8977
BCLllA-8805 - GGACCCCCACCGCAUAGAGCGC 22 8978
BCLllA-8806 - UGGACCCCCACCGCAUAGAGCGC 23 8979
BCLllA-8807 - UUGGACCCCCACCGCAUAGAGCGC 24 8980
BCLllA-8808 - AUCUCGGGGCGCAGCGGC 18 8981
BCLllA-8809 - GAUCUCGGGGCGCAGCGGC 19 8982
BCLllA-8810 - GGAUCUCGGGGCGCAGCGGC 20 8983
BCLllA-8811 - GGGAUCUCGGGGCGCAGCGGC 21 8984
BCLllA-8812 - AGGGAUCUCGGGGCGCAGCGGC 22 8985
BCLllA-8813 - GAGGGAUCUCGGGGCGCAGCGGC 23 8986
BCLllA-8814 - GGAGGGAUCUCGGGGCGCAGCGGC 24 8987
BCLllA-8815 - CGGCGCAGCCACACGGGC 18 8988
BCLllA-8816 - CCGGCGCAGCCACACGGGC 19 8989
BCLllA-3804 - ACCGGCGCAGCCACACGGGC 20 8990
BCLllA-8817 - CACCGGCGCAGCCACACGGGC 21 8991
BCLllA-8818 - GCACCGGCGCAGCCACACGGGC 22 8992
BCLllA-8819 - UGCACCGGCGCAGCCACACGGGC 23 8993
BCLllA-8820 - GUGCACCGGCGCAGCCACACGGGC 24 8994
BCLllA-8821 - CAUAUUAGUGGUCCGGGC 18 8995
BCLllA-8822 - CCAUAUUAGUGGUCCGGGC 19 8996
BCLllA-8823 - CCCAUAUUAGUGGUCCGGGC 20 8997
BCLllA-8824 - CCCCAUAUUAGUGGUCCGGGC 21 8998
BCLllA-8825 - GCCCCAUAUUAGUGGUCCGGGC 22 8999
BCLllA-8826 - CGCCCCAUAUUAGUGGUCCGGGC 23 9000
BCLllA-8827 - ACGCCCCAUAUUAGUGGUCCGGGC 24 9001
BCLllA-8828 - UUCCACCAGGUCCUGGGC 18 9002
BCLllA-8829 - CUUCCACCAGGUCCUGGGC 19 9003
BCLllA-8830 - CCUUCCACCAGGUCCUGGGC 20 9004
BCLllA-8831 - GCCUUCCACCAGGUCCUGGGC 21 9005
BCLllA-8832 - GGCCUUCCACCAGGUCCUGGGC 22 9006
BCLllA-8833 - AGGCCUUCCACCAGGUCCUGGGC 23 9007
BCLllA-8834 - GAGGCCUUCCACCAGGUCCUGGGC 24 9008
BCLllA-8835 - CGGGGCGCGGUCGUGGGC 18 9009
BCLllA-8836 - GCGGGGCGCGGUCGUGGGC 19 9010
BCLllA-8837 - CGCGGGGCGCGGUCGUGGGC 20 9011
BCLllA-8838 - UCGCGGGGCGCGGUCGUGGGC 21 9012
BCLllA-8839 - CUCGCGGGGCGCGGUCGUGGGC 22 9013
BCLllA-8840 - GCUCGCGGGGCGCGGUCGUGGGC 23 9014
BCLllA-8841 - AGCUCGCGGGGCGCGGUCGUGGGC 24 9015
BCLllA-8842 - GAGACUUAGAGAGCUGGC 18 9016
BCLllA-8843 - GGAGACUUAGAGAGCUGGC 19 9017 BCLllA-6037 - AGGAGACUUAGAGAGCUGGC 20 9018
BCLllA-8844 - UAGGAGACUUAGAGAGCUGGC 21 9019
BCLllA-8845 - CUAGGAGACUUAGAGAGCUGGC 22 9020
BCLllA-8846 - UCUAGGAGACUUAGAGAGCUGGC 23 9021
BCLllA-8847 - CUCUAGGAGACUUAGAGAGCUGGC 24 9022
BCLllA-8848 - GAGCUGGACGGAGGGAUC 18 9023
BCLllA-8849 - GGAGCUGGACGGAGGGAUC 19 9024
BCLllA-8850 - GGGAGCUGGACGGAGGGAUC 20 9025
BCLllA-8851 - GGGGAGCUGGACGGAGGGAUC 21 9026
BCLllA-8852 - CGGGGAGCUGGACGGAGGGAUC 22 9027
BCLllA-8853 - CCGGGGAGCUGGACGGAGGGAUC 23 9028
BCLllA-8854 - CCCGGGGAGCUGGACGGAGGGAUC 24 9029
BCLllA-8855 - AACGACCCCAACCUGAUC 18 9030
BCLllA-8856 - GAACGACCCCAACCUGAUC 19 9031
BCLllA-8857 - AGAACGACCCCAACCUGAUC 20 9032
BCLllA-8858 - GAGAACGACCCCAACCUGAUC 21 9033
BCLllA-8859 - CGAGAACGACCCCAACCUGAUC 22 9034
BCLllA-8860 - GCGAGAACGACCCCAACCUGAUC 23 9035
BCLllA-8861 - AGCGAGAACGACCCCAACCUGAUC 24 9036
BCLllA-8862 - AAUACCAGGAUCAGUAUC 18 9037
BCLllA-8863 - GAAUACCAGGAUCAGUAUC 19 9038
BCLllA-8864 - AGAAUACCAGGAUCAGUAUC 20 9039
BCLllA-8865 - AAGAAUACCAGGAUCAGUAUC 21 9040
BCLllA-8866 - UAAGAAUACCAGGAUCAGUAUC 22 9041
BCLllA-8867 - CUAAGAAUACCAGGAUCAGUAUC 23 9042
BCLllA-8868 - GCUAAGAAUACCAGGAUCAGUAUC 24 9043
BCLllA-8869 - CCCGGGCGAGUCGGCCUC 18 9044
BCLllA-8870 - CCCCGGGCGAGUCGGCCUC 19 9045
BCLllA-6047 - UCCCCGGGCGAGUCGGCCUC 20 9046
BCLllA-8871 - CUCCCCGGGCGAGUCGGCCUC 21 9047
BCLllA-8872 - GCUCCCCGGGCGAGUCGGCCUC 22 9048
BCLllA-8873 - UGCUCCCCGGGCGAGUCGGCCUC 23 9049
BCLllA-8874 - CUGCUCCCCGGGCGAGUCGGCCUC 24 9050
BCLllA-8875 - UCUAAGCGCAUCAAGCUC 18 9051
BCLllA-8876 - CUCUAAGCGCAUCAAGCUC 19 9052
BCLllA-8877 - UCUCUAAGCGCAUCAAGCUC 20 9053
BCLllA-8878 - UUCUCUAAGCGCAUCAAGCUC 21 9054
BCLllA-8879 - CUUCUCUAAGCGCAUCAAGCUC 22 9055
BCLllA-8880 - CCUUCUCUAAGCGCAUCAAGCUC 23 9056
BCLllA-8881 - CCCUUCUCUAAGCGCAUCAAGCUC 24 9057
BCLllA-8882 - GUUUUCGGAUGGAAGCUC 18 9058
BCLllA-8883 - AGUUUUCGGAUGGAAGCUC 19 9059 BCLllA-8884 - CAGUUUUCGGAUGGAAGCUC 20 9060
BCLllA-8885 - GCAGUUUUCGGAUGGAAGCUC 21 9061
BCLllA-8886 - GGCAGUUUUCGGAUGGAAGCUC 22 9062
BCLllA-8887 - UGGCAGUUUUCGGAUGGAAGCUC 23 9063
BCLllA-8888 - GUGGCAGUUUUCGGAUGGAAGCUC 24 9064
BCLllA-8889 - CC ACC ACG AG A ACAG C U C 18 9065
BCLllA-8890 - GCCACCACGAGAACAGCUC 19 9066
BCLllA-8891 - CGCCACCACGAGAACAGCUC 20 9067
BCLllA-8892 - GCGCCACCACGAGAACAGCUC 21 9068
BCLllA-8893 - CGCGCCACCACGAGAACAGCUC 22 9069
BCLllA-8894 - GCGCGCCACCACGAGAACAGCUC 23 9070
BCLllA-8895 - GGCGCGCCACCACGAGAACAGCUC 24 9071
BCLllA-8896 - UCCCGCCAUGGAUUUCUC 18 9072
BCLllA-8897 - CUCCCGCCAUGGAUUUCUC 19 9073
BCLllA-8898 - CCUCCCGCCAUGGAUUUCUC 20 9074
BCLllA-8899 - GCCUCCCGCCAUGGAUUUCUC 21 9075
BCLllA-8900 - AGCCUCCCGCCAUGGAUUUCUC 22 9076
BCLllA-8901 - GAGCCUCCCGCCAUGGAUUUCUC 23 9077
BCLllA-8902 - GGAGCCUCCCGCCAUGGAUUUCUC 24 9078
BCLllA-8903 - GAGGCCUUCCACCAGGUC 18 9079
BCLllA-8904 - CGAGGCCUUCCACCAGGUC 19 9080
BCLllA-8905 - GCGAGGCCUUCCACCAGGUC 20 9081
BCLllA-8906 - AGCGAGGCCUUCCACCAGGUC 21 9082
BCLllA-8907 - CAGCGAGGCCUUCCACCAGGUC 22 9083
BCLllA-8908 - UCAGCGAGGCCUUCCACCAGGUC 23 9084
BCLllA-8909 - UUCAGCGAGGCCUUCCACCAGGUC 24 9085
BCLllA-8910 - AGCUCGCGGGGCGCGGUC 18 9086
BCLllA-8911 - CAGCUCGCGGGGCGCGGUC 19 9087
BCLllA-8912 - ACAGCUCGCGGGGCGCGGUC 20 9088
BCLllA-8913 - AACAGCUCGCGGGGCGCGGUC 21 9089
BCLllA-8914 - GAACAGCUCGCGGGGCGCGGUC 22 9090
BCLllA-8915 - AGAA CAGCUCGCGGGGCGCGGUC 23 9091
BCLllA-8916 - GAGAACAGCUCGCGGGGCGCGGUC 24 9092
BCLllA-8917 - UACUGUGGGAAAGUCUUC 18 9093
BCLllA-8918 - GUACUGUGGGAAAGUCUUC 19 9094
BCLllA-8919 - AGUACUGUGGGAAAGUCUUC 20 9095
BCLllA-8920 - GAGUACUGUGGGAAAGUCUUC 21 9096
BCLllA-8921 - UGAGUACUGUGGGAAAGUCUUC 22 9097
BCLllA-8922 - GUGAGUACUGUGGGAAAGUCUUC 23 9098
BCLllA-8923 - UGUGAGUACUGUGGGAAAGUCUUC 24 9099
BCLllA-8924 - UCCGUGGUGGCCAAGUUC 18 9100
BCLllA-8925 - GUCCGUGGUGGCCAAGUUC 19 9101 BCLllA-8926 - AGUCCGUGGUGGCCAAGUUC 20 9102
BCLllA-8927 - AAGUCCGUGGUGGCCAAGUUC 21 9103
BCLllA-8928 - CAAGUCCGUGGUGGCCAAGUUC 22 9104
BCLllA-8929 - UCAAGUCCGUGGUGGCCAAGUUC 23 9105
BCLllA-8930 - CUCAAGUCCGUGGUGGCCAAGUUC 24 9106
BCLllA-6826 - AUUAUUUUGCAGGUAAAG 18 9107
BCLllA-6827 - UAUUAUUUUGCAGGUAAAG 19 9108
BCLllA-6828 - GUAUUAUUUUGCAGGUAAAG 20 9109
BCLllA-8931 - U GCACCCAGG CCAG CAAG 18 9110
BCLllA-8932 - GUGCACCCAGGCCAGCAAG 19 9111
BCLllA-8933 - CGUGCACCCAGGCCAGCAAG 20 9112
BCLllA-8934 - GCGUGCACCCAGGCCAGCAAG 21 9113
BCLllA-8935 - CGCGUGCACCCAGGCCAGCAAG 22 9114
BCLllA-8936 - ACGCGUGCACCCAGGCCAGCAAG 23 9115
BCLllA-8937 - CACG CG UG CACCCAGG CCAGCAAG 24 9116
BCLllA-8938 - ACGAGGAAGAGGAAGAAG 18 9117
BCLllA-8939 - GACGAGGAAGAGGAAGAAG 19 9118
BCLllA-3449 - CGACGAGGAAGAGGAAGAAG 20 9119
BCLllA-8940 - ACGACGAGGAAGAGGAAGAAG 21 9120
BCLllA-8941 - GACGACGAGGAAGAGGAAGAAG 22 9121
BCLllA-8942 - GGACGACGAGGAAGAGGAAGAAG 23 9122
BCLllA-8943 - AGGACGACGAGGAAGAGGAAGAAG 24 9123
BCLllA-8944 - ACGACGAGGAAGAGGAAG 18 9124
BCLllA-8945 - GACGACGAGGAAGAGGAAG 19 9125
BCLllA-3959 - GGACGACGAGGAAGAGGAAG 20 9126
BCLllA-8946 - AGGACGACGAGGAAGAGGAAG 21 9127
BCLllA-8947 - GAGGACGACGAGGAAGAGGAAG 22 9128
BCLllA-8948 - GGAGGACGACGAGGAAGAGGAAG 23 9129
BCLllA-8949 - AGGAGGACGACGAGGAAGAGGAAG 24 9130
BCLllA-8950 - AGGAGGACGACGAGGAAG 18 9131
BCLllA-8951 - GAGGAGGACGACGAGGAAG 19 9132
BCLllA-3448 - AGAGGAGGACGACGAGGAAG 20 9133
BCLllA-8952 - AAGAGGAGGACGACGAGGAAG 21 9134
BCLllA-8953 - GAAGAGGAGGACGACGAGGAAG 22 9135
BCLllA-8954 - GGAAGAGGAGGACGACGAGGAAG 23 9136
BCLllA-8955 - AGGAAGAGGAGGACGACGAGGAAG 24 9137
BCLllA-8956 - AGGAAGAAGAGGAGGAAG 18 9138
BCLllA-8957 - GAGGAAGAAGAGGAGGAAG 19 9139
BCLllA-3453 - AGAGGAAGAAGAGGAGGAAG 20 9140
BCLllA-8958 - AAGAGGAAGAAGAGGAGGAAG 21 9141
BCLllA-8959 - GAAGAGGAAGAAGAGGAGGAAG 22 9142
BCLllA-8960 - GGAAGAGGAAGAAGAGGAGGAAG 23 9143 BCLllA-8961 - AGGAAGAGGAAGAAGAGGAGGAAG 24 9144
BCLllA-8962 - ACGGGGACGAGGAGGAAG 18 9145
BCLllA-8963 - AACGGGGACGAGGAGGAAG 19 9146
BCLllA-3441 - GAACGGGGACGAGGAGGAAG 20 9147
BCLllA-8964 - AGAACGGGGACGAGGAGGAAG 21 9148
BCLllA-8965 - GAGAACGGGGACGAGGAGGAAG 22 9149
BCLllA-8966 - GGAGAACGGGGACGAGGAGGAAG 23 9150
BCLllA-8967 - CGGAGAACGGGGACGAGGAGGAAG 24 9151
BCLllA-8968 - GCGCAGCGGCACGGGAAG 18 9152
BCLllA-8969 - GGCGCAGCGGCACGGGAAG 19 9153
BCLllA-3376 - GGGCGCAGCGGCACGGGAAG 20 9154
BCLllA-8970 - GGGGCGCAGCGGCACGGGAAG 21 9155
BCLllA-8971 - CGGGGCGCAGCGGCACGGGAAG 22 9156
BCLllA-8972 - UCGGGGCGCAGCGGCACGGGAAG 23 9157
BCLllA-8973 - CUCGGGGCGCAGCGGCACGGGAAG 24 9158
BCLllA-8974 - AGGCUUCCGGCCUGGCAG 18 9159
BCLllA-8975 - GAGGCUUCCGGCCUGGCAG 19 9160
BCLllA-8976 - AGAGGCUUCCGGCCUGGCAG 20 9161
BCLllA-8977 - GAGAGGCUUCCGGCCUGGCAG 21 9162
BCLllA-8978 - AGAGAGGCUUCCGGCCUGGCAG 22 9163
BCLllA-8979 - GAGAGAGGCUUCCGGCCUGGCAG 23 9164
BCLllA-8980 - CGAGAGAGGCUUCCGGCCUGGCAG 24 9165
BCLllA-8981 - GAGGAAGAGGAAGAAGAG 18 9166
BCLllA-8982 - CGAGGAAGAGGAAGAAGAG 19 9167
BCLllA-3948 - ACGAGGAAGAGGAAGAAGAG 20 9168
BCLllA-8983 - GACGAGGAAGAGGAAGAAGAG 21 9169
BCLllA-8984 - CGACGAGGAAGAGGAAGAAGAG 22 9170
BCLllA-8985 - ACGACGAGGAAGAGGAAGAAGAG 23 9171
BCLllA-8986 - GACGACGAGGAAGAGGAAGAAGAG 24 9172
BCLllA-8987 - GAAGAAGAGGAGGAAGAG 18 9173
BCLllA-8988 - GGAAGAAGAGGAGGAAGAG 19 9174
BCLllA-3961 - AGGAAGAAGAGGAGGAAGAG 20 9175
BCLllA-8989 - GAGGAAGAAGAGGAGGAAGAG 21 9176
BCLllA-8990 - AGAGGAAGAAGAGGAGGAAGAG 22 9177
BCLllA-8991 - AAGAGGAAGAAGAGGAGGAAGAG 23 9178
BCLllA-8992 - GAAGAGGAAGAAGAGGAGGAAGAG 24 9179
BCLllA-8993 - GGGGACGAGGAGGAAGAG 18 9180
BCLllA-8994 - CGGGGACGAGGAGGAAGAG 19 9181
BCLllA-3945 - ACGGGGACGAGGAGGAAGAG 20 9182
BCLllA-8995 - AACGGGGACGAGGAGGAAGAG 21 9183
BCLllA-8996 - GAACGGGGACGAGGAGGAAGAG 22 9184
BCLllA-8997 - AGAACGGGGACGAGGAGGAAGAG 23 9185 BCLllA-8998 - GAGAACGGGGACGAGGAGGAAGAG 24 9186
BCLllA-8999 - CCGGAGAACGGGGACGAG 18 9187
BCLllA-9000 - CCCGGAGAACGGGGACGAG 19 9188
BCLllA-9001 - UCCCGGAGAACGGGGACGAG 20 9189
BCLllA-9002 - AUCCCGGAGAACGGGGACGAG 21 9190
BCLllA-9003 - GAUCCCGGAGAACGGGGACGAG 22 9191
BCLllA-9004 - UGAUCCCGGAGAACGGGGACGAG 23 9192
BCLllA-9005 - CUGAUCCCGGAGAACGGGGACGAG 24 9193
BCLllA-9006 - GACUCGGUGGCCGGCGAG 18 9194
BCLllA-9007 - AGACUCGGUGGCCGGCGAG 19 9195
BCLllA-9008 - AAGACUCGGUGGCCGGCGAG 20 9196
BCLllA-9009 - GAAGACUCGGUGGCCGGCGAG 21 9197
BCLllA-9010 - CGAAGACUCGGUGGCCGGCGAG 22 9198
BCLllA-9011 - ACGAAGACUCGGUGGCCGGCGAG 23 9199
BCLllA-9012 - GACGAAGACUCGGUGGCCGGCGAG 24 9200
BCLllA-9013 - AAGCGCAUCAAGCUCGAG 18 9201
BCLllA-9014 - UAAGCGCAUCAAGCUCGAG 19 9202
BCLllA-9015 - CUAAGCGCAUCAAGCUCGAG 20 9203
BCLllA-9016 - UCU AAGCGCAUCAAGCUCGAG 21 9204
BCLllA-9017 - CUCUAAGCGCAUCAAGCUCGAG 22 9205
BCLllA-9018 - UCUCUAAGCGCAUCAAGCUCGAG 23 9206
BCLllA-9019 - UUCUCUAAGCGCAUCAAGCUCGAG 24 9207
BCLllA-9020 - GAAGAGGAGGAAGAGGAG 18 9208
BCLllA-9021 - AGAAGAGGAGGAAGAGGAG 19 9209
BCLllA-3964 - AAGAAGAGGAGGAAGAGGAG 20 9210
BCLllA-9022 - GAAGAAGAGGAGGAAGAGGAG 21 9211
BCLllA-9023 - GGAAGAAGAGGAGGAAGAGGAG 22 9212
BCLllA-9024 - AGGAAGAAGAGGAGGAAGAGGAG 23 9213
BCLllA-9025 - GAGGAAGAAGAGGAGGAAGAGGAG 24 9214
BCLllA-9026 - GAGGAGGAAGAGGAGGAG 18 9215
BCLllA-9027 - AGAGGAGGAAGAGGAGGAG 19 9216
BCLllA-3965 - AAGAGGAGGAAGAGGAGGAG 20 9217
BCLllA-9028 - GAAGAGGAGGAAGAGGAGGAG 21 9218
BCLllA-9029 - AGAAGAGGAGGAAGAGGAGGAG 22 9219
BCLllA-9030 - AAGAAGAGGAGGAAGAGGAGGAG 23 9220
BCLllA-9031 - GAAGAAGAGGAGGAAGAGGAGGAG 24 9221
BCLllA-9032 - UCCACACCGCCCGGGGAG 18 9222
BCLllA-9033 - CUCCACACCGCCCGGGGAG 19 9223
BCLllA-9034 - UCUCCACACCGCCCGGGGAG 20 9224
BCLllA-9035 - UUCUCCACACCGCCCGGGGAG 21 9225
BCLllA-9036 - CUUCUCCACACCGCCCGGGGAG 22 9226
BCLllA-9037 - GCUUCUCCACACCGCCCGGGGAG 23 9227 BCLllA-9038 - CGCUUCUCCACACCGCCCGGGGAG 24 9228
BCLllA-9039 - GCCGCGAUGCCCAACACG 18 9229
BCLllA-9040 - GGCCGCGAUGCCCAACACG 19 9230
BCLllA-9041 - CGGCCGCGAUGCCCAACACG 20 9231
BCLllA-9042 - CCGGCCGCGAUGCCCAACACG 21 9232
BCLllA-9043 - CCCGGCCGCGAUGCCCAACACG 22 9233
BCLllA-9044 - CCCCGGCCGCGAUGCCCAACACG 23 9234
BCLllA-9045 - CCCCCGGCCGCGAUGCCCAACACG 24 9235
BCLllA-9046 - AGGAAGAGGAGGACGACG 18 9236
BCLllA-9047 - GAGGAAGAGGAGGACGACG 19 9237
BCLllA-3450 - GGAGGAAGAGGAGGACGACG 20 9238
BCLllA-9048 - AGGAGGAAGAGGAGGACGACG 21 9239
BCLllA-9049 - GAGGAGGAAGAGGAGGACGACG 22 9240
BCLllA-9050 - CGAGGAGGAAGAGGAGGACGACG 23 9241
BCLllA-9051 - ACGAGGAGGAAGAGGAGGACGACG 24 9242
BCLllA-9052 - AGGAGGAAGAGGAGGACG 18 9243
BCLllA-9053 - GAGGAGGAAGAGGAGGACG 19 9244
BCLllA-3953 - CGAGGAGGAAGAGGAGGACG 20 9245
BCLllA-9054 - ACGAGGAGGAAGAGGAGGACG 21 9246
BCLllA-9055 - GACGAGGAGGAAGAGGAGGACG 22 9247
BCLllA-9056 - GGACGAGGAGGAAGAGGAGGACG 23 9248
BCLllA-9057 - GGGACGAGGAGGAAGAGGAGGACG 24 9249
BCLllA-9058 - UCCCGGAGAACGGGGACG 18 9250
BCLllA-9059 - AUCCCGGAGAACGGGGACG 19 9251
BCLllA-6081 - GAUCCCGGAGAACGGGGACG 20 9252
BCLllA-9060 - UGAUCCCGGAGAACGGGGACG 21 9253
BCLllA-9061 - CUGAUCCCGGAGAACGGGGACG 22 9254
BCLllA-9062 - CCUGAUCCCGGAGAACGGGGACG 23 9255
BCLllA-9063 - ACCUGAUCCCGGAGAACGGGGACG 24 9256
BCLllA-9064 - CGCCCGGGGAGCUGGACG 18 9257
BCLllA-9065 - CCGCCCGGGGAGCUGGACG 19 9258
BCLllA-9066 - ACCGCCCGGGGAGCUGGACG 20 9259
BCLllA-9067 - CACCGCCCGGGGAGCUGGACG 21 9260
BCLllA-9068 - ACACCGCCCGGGGAGCUGGACG 22 9261
BCLllA-9069 - CACACCGCCCGGGGAGCUGGACG 23 9262
BCLllA-9070 - CCACACCGCCCGGGGAGCUGGACG 24 9263
BCLllA-9071 - GAGGAGGAGGAGCUGACG 18 9264
BCLllA-9072 - GGAGGAGGAGGAGCUGACG 19 9265
BCLllA-9073 - AGGAGGAGGAGGAGCUGACG 20 9266
BCLllA-9074 - GAGGAGGAGGAGGAGCUGACG 21 9267
BCLllA-9075 - AGAGGAGGAGGAGGAGCUGACG 22 9268
BCLllA-9076 - AAGAGGAGGAGGAGGAGCUGACG 23 9269 BCLllA-9077 - GAAGAGGAGGAGGAGGAGCUGACG 24 9270
BCLllA-9078 - GCUUCUCCACACCGCCCG 18 9271
BCLllA-9079 - CGCUUCUCCACACCGCCCG 19 9272
BCLllA-6087 - GCGCUUCUCCACACCGCCCG 20 9273
BCLllA-9080 - UGCGCUUCUCCACACCGCCCG 21 9274
BCLllA-9081 - UUGCGCUUCUCCACACCGCCCG 22 9275
BCLllA-9082 - UUUGCGCUUCUCCACACCGCCCG 23 9276
BCLllA-9083 - GUUUGCGCUUCUCCACACCGCCCG 24 9277
BCLllA-9084 - GACCCCAACCUGAUCCCG 18 9278
BCLllA-9085 - CGACCCCAACCUGAUCCCG 19 9279
BCLllA-9086 - ACGACCCCAACCUGAUCCCG 20 9280
BCLllA-9087 - AACGACCCCAACCUGAUCCCG 21 9281
BCLllA-9088 - GAACGACCCCAACCUGAUCCCG 22 9282
BCLllA-9089 - AGAACGACCCCAACCUGAUCCCG 23 9283
BCLllA-9090 - GAGAACGACCCCAACCUGAUCCCG 24 9284
BCLllA-9091 - CGGUCGUGGGCGUGGGCG 18 9285
BCLllA-9092 - GCGGUCGUGGGCGUGGGCG 19 9286
BCLllA-9093 - CGCGGUCGUGGGCGUGGGCG 20 9287
BCLllA-9094 - GCGCGGUCGUGGGCGUGGGCG 21 9288
BCLllA-9095 - GGCGCGGUCGUGGGCGUGGGCG 22 9289
BCLllA-9096 - GGGCGCGGUCGUGGGCGUGGGCG 23 9290
BCLllA-9097 - GGGGCGCGGUCGUGGGCGUGGGCG 24 9291
BCLllA-9098 - GCCACAGGGACACUUGCG 18 9292
BCLllA-9099 - GGCCACAGGGACACUUGCG 19 9293
BCLllA-9100 - GGGCCACAGGGACACUUGCG 20 9294
BCLllA-9101 - AGGGCCACAGGGACACUUGCG 21 9295
BCLllA-9102 - GAGGGCCACAGGGACACUUGCG 22 9296
BCLllA-9103 - CGAGGGCCACAGGGACACUUGCG 23 9297
BCLllA-9104 - CCGAGGGCCACAGGGACACUUGCG 24 9298
BCLllA-9105 - CCGGGCGAGUCGGCCUCG 18 9299
BCLllA-9106 - CCCGGGCGAGUCGGCCUCG 19 9300
BCLllA-6106 - CCCCGGGCGAGUCGGCCUCG 20 9301
BCLllA-9107 - UCCCCGGGCGAGUCGGCCUCG 21 9302
BCLllA-9108 - CUCCCCGGGCGAGUCGGCCUCG 22 9303
BCLllA-9109 - GCUCCCCGGGCGAGUCGGCCUCG 23 9304
BCLllA-9110 - UGCUCCCCGGGCGAGUCGGCCUCG 24 9305
BCLllA-9111 - UCGUCGGAGCACUCCUCG 18 9306
BCLllA-9112 - CUCGUCGGAGCACUCCUCG 19 9307
BCLllA-9113 - CCUCGUCGGAGCACUCCUCG 20 9308
BCLllA-9114 - UCCUCGUCGGAGCACUCCUCG 21 9309
BCLllA-9115 - CUCCUCGUCGGAGCACUCCUCG 22 9310
BCLllA-9116 - CCUCCUCGUCGGAGCACUCCUCG 23 9311 BCLllA-9117 - GCCUCCUCGUCGGAGCACUCCUCG 24 9312
BCLllA-9118 - UCGCCUUUUGCCUCCUCG 18 9313
BCLllA-9119 - AUCGCCUUUUGCCUCCUCG 19 9314
BCLllA-9120 - AAUCGCCUUUUGCCUCCUCG 20 9315
BCLllA-9121 - CAAUCGCCUUUUGCCUCCUCG 21 9316
BCLllA-9122 - ACAAUCGCCUUUUGCCUCCUCG 22 9317
BCLllA-9123 - GACAAUCGCCUUUUGCCUCCUCG 23 9318
BCLllA-9124 - AGACAAUCGCCUUUUGCCUCCUCG 24 9319
BCLllA-9125 - CACCACG AG AACAG CU CG 18 9320
BCLllA-9126 - CCACCACGAGAACAGCUCG 19 9321
BCLllA-6107 - GCCACCACGAGAACAGCUCG 20 9322
BCLllA-9127 - CGCCACCACGAGAACAGCUCG 21 9323
BCLllA-9128 - GCGCCACCACGAGAACAGCUCG 22 9324
BCLllA-9129 - CGCGCCACCACGAGAACAGCUCG 23 9325
BCLllA-9130 - GCGCGCCACCACGAGAACAGCUCG 24 9326
BCLllA-9131 - CUGGGCAGCCCCAGCUCG 18 9327
BCLllA-9132 - GCUGGGCAGCCCCAGCUCG 19 9328
BCLllA-9133 - UGCUGGGCAGCCCCAGCUCG 20 9329
BCLllA-9134 - CUGCUGGGCAGCCCCAGCUCG 21 9330
BCLllA-9135 - GCUGCUGGGCAGCCCCAGCUCG 22 9331
BCLllA-9136 - UGCUGCUGGGCAGCCCCAGCUCG 23 9332
BCLllA-9137 - CUGCUGCUGGGCAGCCCCAGCUCG 24 9333
BCLllA-9138 - AGGAAGAGGAAGAAGAGG 18 9334
BCLllA-9139 - GAGGAAGAGGAAGAAGAGG 19 9335
BCLllA-3451 - CGAGGAAGAGGAAGAAGAGG 20 9336
BCLllA-9140 - ACGAGGAAGAGGAAGAAGAGG 21 9337
BCLllA-9141 - GACGAGGAAGAGGAAGAAGAGG 22 9338
BCLllA-9142 - CGACGAGGAAGAGGAAGAAGAGG 23 9339
BCLllA-9143 - ACGACGAGGAAGAGGAAGAAGAGG 24 9340
BCLllA-9144 - AGGACGACGAGGAAGAGG 18 9341
BCLllA-9145 - GAGGACGACGAGGAAGAGG 19 9342
BCLllA-3957 - GGAGGACGACGAGGAAGAGG 20 9343
BCLllA-9146 - AGGAGGACGACGAGGAAGAGG 21 9344
BCLllA-9147 - GAGGAGGACGACGAGGAAGAGG 22 9345
BCLllA-9148 - AGAGGAGGACGACGAGGAAGAGG 23 9346
BCLllA-9149 - AAGAGGAGGACGACGAGGAAGAGG 24 9347
BCLllA-9150 - AAGAAGAGGAGGAAGAGG 18 9348
BCLllA-9151 - GAAGAAGAGGAGGAAGAGG 19 9349
BCLllA-3452 - GGAAGAAGAGGAGGAAGAGG 20 9350
BCLllA-9152 - AGGAAGAAGAGGAGGAAGAGG 21 9351
BCLllA-9153 - GAGGAAGAAGAGGAGGAAGAGG 22 9352
BCLllA-9154 - AGAGGAAGAAGAGGAGGAAGAGG 23 9353 BCLllA-9155 - AAGAGGAAGAAGAGGAGGAAGAGG 24 9354
BCLllA-9156 - CUGACGGAGAGCGAGAGG 18 9355
BCLllA-9157 - GCUGACGGAGAGCGAGAGG 19 9356
BCLllA-9158 - AGCUGACGGAGAGCGAGAGG 20 9357
BCLllA-9159 - GAGCUGACGGAGAGCGAGAGG 21 9358
BCLllA-9160 - GGAGCUGACGGAGAGCGAGAGG 22 9359
BCLllA-9161 - AGGAGCUGACGGAGAGCGAGAGG 23 9360
BCLllA-9162 - GAGGAGCUGACGGAGAGCGAGAGG 24 9361
BCLllA-9163 - AAGAGGAGGACGACGAGG 18 9362
BCLllA-9164 - GAAGAGGAGGACGACGAGG 19 9363
BCLllA-3960 - GGAAGAGGAGGACGACGAGG 20 9364
BCLllA-9165 - AGGAAGAGGAGGACGACGAGG 21 9365
BCLllA-9166 - GAGGAAGAGGAGGACGACGAGG 22 9366
BCLllA-9167 - GGAGGAAGAGGAGGACGACGAGG 23 9367
BCLllA-9168 - AGGAGGAAGAGGAGGACGACGAGG 24 9368
BCLllA-9169 - CGGAGAACGGGGACGAGG 18 9369
BCLllA-9170 - CCGGAGAACGGGGACGAGG 19 9370
BCLllA-3330 - CCCGGAGAACGGGGACGAGG 20 9371
BCLllA-9171 - UCCCGGAGAACGGGGACGAGG 21 9372
BCLllA-9172 - AUCCCGGAGAACGGGGACGAGG 22 9373
BCLllA-9173 - GAUCCCGGAGAACGGGGACGAGG 23 9374
BCLllA-9174 - UGAUCCCGGAGAACGGGGACGAGG 24 9375
BCLllA-9175 - GCGGCCACCUGGCCGAGG 18 9376
BCLllA-9176 - CGCGGCCACCUGGCCGAGG 19 9377
BCLllA-9177 - GCGCGGCCACCUGGCCGAGG 20 9378
BCLllA-9178 - AGCGCGGCCACCUGGCCGAGG 21 9379
BCLllA-9179 - AAGCGCGGCCACCUGGCCGAGG 22 9380
BCLllA-9180 - UAAGCGCGGCCACCUGGCCGAGG 23 9381
BCLllA-9181 - AUAAGCGCGGCCACCUGGCCGAGG 24 9382
BCLllA-9182 - AAGAGGAAGAAGAGGAGG 18 9383
BCLllA-9183 - GAAGAGGAAGAAGAGGAGG 19 9384
BCLllA-3963 - GGAAGAGGAAGAAGAGGAGG 20 9385
BCLllA-9184 - AGGAAGAGGAAGAAGAGGAGG 21 9386
BCLllA-9185 - GAGGAAGAGGAAGAAGAGGAGG 22 9387
BCLllA-9186 - CGAGGAAGAGGAAGAAGAGGAGG 23 9388
BCLllA-9187 - ACGAGGAAGAGGAAGAAGAGGAGG 24 9389
BCLllA-9188 - AAGAGGAGGAAGAGGAGG 18 9390
BCLllA-9189 - GAAGAGGAGGAAGAGGAGG 19 9391
BCLllA-3454 - AGAAGAGGAGGAAGAGGAGG 20 9392
BCLllA-9190 - AAG AAG AG G AG G AAG AG G AG G 21 9393
BCLllA-9191 - GAAGAAGAGGAGGAAGAGGAGG 22 9394
BCLllA-9192 - GGAAGAAGAGGAGGAAGAGGAGG 23 9395 BCLllA-9193 - AGGAAGAAGAGGAGGAAGAGGAGG 24 9396
BCLllA-9194 - AGAACGGGGACGAGGAGG 18 9397
BCLllA-9195 - GAGAACGGGGACGAGGAGG 19 9398
BCLllA-3918 - GGAGAACGGGGACGAGGAGG 20 9399
BCLllA-9196 - CGGAGAACGGGGACGAGGAGG 21 9400
BCLllA-9197 - CCGGAGAACGGGGACGAGGAGG 22 9401
BCLllA-9198 - CCCGGAGAACGGGGACGAGGAGG 23 9402
BCLllA-9199 - UCCCGGAGAACGGGGACGAGGAGG 24 9403
BCLllA-9200 - AGGAGGAAGAGGAGGAGG 18 9404
BCLllA-9201 - GAGGAGGAAGAGGAGGAGG 19 9405
BCLllA-3455 - AGAGGAGGAAGAGGAGGAGG 20 9406
BCLllA-9202 - AAGAGGAGGAAGAGGAGGAGG 21 9407
BCLllA-9203 - GAAGAGGAGGAAGAGGAGGAGG 22 9408
BCLllA-9204 - AGAAGAGGAGGAAGAGGAGGAGG 23 9409
BCLllA-9205 - AAGAAGAGGAGGAAGAGGAGGAGG 24 9410
BCLllA-9206 - ACCGGCGCAGCCACACGG 18 9411
BCLllA-9207 - CACCGGCGCAGCCACACGG 19 9412
BCLllA-3764 - GCACCGGCGCAGCCACACGG 20 9413
BCLllA-9208 - UGCACCGGCGCAGCCACACGG 21 9414
BCLllA-9209 - GUGCACCGGCGCAGCCACACGG 22 9415
BCLllA-9210 - GGUGCACCGGCGCAGCCACACGG 23 9416
BCLllA-9211 - UGGUGCACCGGCGCAGCCACACGG 24 9417
BCLllA-9212 - UAGAGCGCCUGGGGGCGG 18 9418
BCLllA-9213 - AUAGAGCGCCUGGGGGCGG 19 9419
BCLllA-9214 - CAUAGAGCGCCUGGGGGCGG 20 9420
BCLllA-9215 - GCAUAGAGCGCCUGGGGGCGG 21 9421
BCLllA-9216 - CGCAUAGAGCGCCUGGGGGCGG 22 9422
BCLllA-9217 - CCGCAUAGAGCGCCUGGGGGCGG 23 9423
BCLllA-9218 - ACCGCAUAGAGCGCCUGGGGGCGG 24 9424
BCLllA-9219 - AUGUGUGGCAGUUUUCGG 18 9425
BCLllA-9220 - GAUGUGUGGCAGUUUUCGG 19 9426
BCLllA-9221 - AGAUGUGUGGCAGUUUUCGG 20 9427
BCLllA-9222 - AAGAUGUGUGGCAGUUUUCGG 21 9428
BCLllA-9223 - CAAGAUGUGUGGCAGUUUUCGG 22 9429
BCLllA-9224 - UCAAGAUGUGUGGCAGUUUUCGG 23 9430
BCLllA-9225 - CUCAAGAUGUGUGGCAGUUUUCGG 24 9431
BCLllA-9226 - AAUUUGAAGCCCCCAGGG 18 9432
BCLllA-9227 - AAAUUUGAAGCCCCCAGGG 19 9433
BCLllA-9228 - AAAAUUUGAAGCCCCCAGGG 20 9434
BCLllA-9229 - GAAAAUUUGAAGCCCCCAGGG 21 9435
BCLllA-9230 - AGAAAAUUUGAAGCCCCCAGGG 22 9436
BCLllA-9231 - GAGAAAAUUUGAAGCCCCCAGGG 23 9437 BCLllA-9232 - UGAGAAAAUUUGAAGCCCCCAGGG 24 9438
BCLllA-9233 - GUGGACUACGGCUUCGGG 18 9439
BCLllA-9234 - GGUGGACUACGGCUUCGGG 19 9440
BCLllA-9235 - GGGUGGACUACGGCUUCGGG 20 9441
BCLllA-9236 - AGGGUGGACUACGGCUUCGGG 21 9442
BCLllA-9237 - GAGGGUGGACUACGGCUUCGGG 22 9443
BCLllA-9238 - AGAGGGUGGACUACGGCUUCGGG 23 9444
BCLllA-9239 - GAGAGGGUGGACUACGGCUUCGGG 24 9445
BCLllA-9240 - UGAUCCCGGAGAACGGGG 18 9446
BCLllA-9241 - CUGAUCCCGGAGAACGGGG 19 9447
BCLllA-9242 - CCUGAUCCCGGAGAACGGGG 20 9448
BCLllA-9243 - ACCUGAUCCCGGAGAACGGGG 21 9449
BCLllA-9244 - AACCUGAUCCCGGAGAACGGGG 22 9450
BCLllA-9245 - CAACCUGAUCCCGGAGAACGGGG 23 9451
BCLllA-9246 - CCAACCUGAUCCCGGAGAACGGGG 24 9452
BCLllA-9247 - GCAUAGAGCGCCUGGGGG 18 9453
BCLllA-9248 - CGCAUAGAGCGCCUGGGGG 19 9454
BCLllA-6143 - CCGCAUAGAGCGCCUGGGGG 20 9455
BCLllA-9249 - ACCGCAUAGAGCGCCUGGGGG 21 9456
BCLllA-9250 - CACCGCAUAGAGCGCCUGGGGG 22 9457
BCLllA-9251 - CCACCGCAUAGAGCGCCUGGGGG 23 9458
BCLllA-9252 - CCCACCGCAUAGAGCGCCUGGGGG 24 9459
BCLllA-9253 - CGCAUAGAGCGCCUGGGG 18 9460
BCLllA-9254 - CCGCAUAGAGCGCCUGGGG 19 9461
BCLllA-9255 - ACCGCAUAGAGCGCCUGGGG 20 9462
BCLllA-9256 - CACCGCAUAGAGCGCCUGGGG 21 9463
BCLllA-9257 - CCACCGCAUAGAGCGCCUGGGG 22 9464
BCLllA-9258 - CCCACCGCAUAGAGCGCCUGGGG 23 9465
BCLllA-9259 - CCCCACCGCAUAGAGCGCCUGGGG 24 9466
BCLllA-9260 - AUAAGCGCGGCCACCUGG 18 9467
BCLllA-9261 - CAUAAGCGCGGCCACCUGG 19 9468
BCLllA-9262 - GCAUAAGCGCGGCCACCUGG 20 9469
BCLllA-9263 - AGCAUAAGCGCGGCCACCUGG 21 9470
BCLllA-9264 - AAGCAUAAGCGCGGCCACCUGG 22 9471
BCLllA-9265 - GAAGCAUAAGCGCGGCCACCUGG 23 9472
BCLllA-9266 - AGAAGCAUAAGCGCGGCCACCUGG 24 9473
BCLllA-9267 - GAGAGGCUUCCGGCCUGG 18 9474
BCLllA-9268 - AGAGAGGCUUCCGGCCUGG 19 9475
BCLllA-9269 - GAGAGAGGCUUCCGGCCUGG 20 9476
BCLllA-9270 - CGAGAGAGGCUUCCGGCCUGG 21 9477
BCLllA-9271 - UCGAGAGAGGCUUCCGGCCUGG 22 9478
BCLllA-9272 - AUCGAGAGAGGCUUCCGGCCUGG 23 9479 BCLllA-9273 - UAUCGAGAGAGGCUUCCGGCCUGG 24 9480
BCLllA-9274 - CCUUCCACCAGGUCCUGG 18 9481
BCLllA-9275 - GCCUUCCACCAGGUCCUGG 19 9482
BCLllA-9276 - GGCCUUCCACCAGGUCCUGG 20 9483
BCLllA-9277 - AGGCCUUCCACCAGGUCCUGG 21 9484
BCLllA-9278 - GAGGCCUUCCACCAGGUCCUGG 22 9485
BCLllA-9279 - CGAGGCCUUCCACCAGGUCCUGG 23 9486
BCLllA-9280 - GCGAGGCCUUCCACCAGGUCCUGG 24 9487
BCLllA-9281 - GGAGACUUAGAGAGCUGG 18 9488
BCLllA-9282 - AGGAGACUUAGAGAGCUGG 19 9489
BCLllA-9283 - UAGGAGACUUAGAGAGCUGG 20 9490
BCLllA-9284 - CUAGGAGACUUAGAGAGCUGG 21 9491
BCLllA-9285 - UCUAGGAGACUUAGAGAGCUGG 22 9492
BCLllA-9286 - CUCUAGGAGACUUAGAGAGCUGG 23 9493
BCLllA-9287 - UCUCUAGGAGACUUAGAGAGCUGG 24 9494
BCLllA-9288 - CACCGCCCGGGGAGCUGG 18 9495
BCLllA-9289 - ACACCGCCCGGGGAGCUGG 19 9496
BCLllA-9290 - CACACCGCCCGGGGAGCUGG 20 9497
BCLllA-9291 - CCACACCGCCCGGGGAGCUGG 21 9498
BCLllA-9292 - UCCACACCGCCCGGGGAGCUGG 22 9499
BCLllA-9293 - CUCCACACCGCCCGGGGAGCUGG 23 9500
BCLllA-9294 - UCUCCA CACCGCCCGGGGAGCUGG 24 9501
BCLllA-9295 - CAGCGGCACGGGAAGUGG 18 9502
BCLllA-9296 - GCAGCGGCACGGGAAGUGG 19 9503
BCLllA-6157 - CGCAGCGGCACGGGAAGUGG 20 9504
BCLllA-9297 - GCGCAGCGGCACGGGAAGUGG 21 9505
BCLllA-9298 - GGCGCAGCGGCACGGGAAGUGG 22 9506
BCLllA-9299 - GGGCGCAGCGGCACGGGAAGUGG 23 9507
BCLllA-9300 - GGGGCGCAGCGGCACGGGAAGUGG 24 9508
BCLllA-9301 - GCCCUGCCCGACGUCAUG 18 9509
BCLllA-9302 - CGCCCUGCCCGACGUCAUG 19 9510
BCLllA-9303 - GCGCCCUGCCCGACGUCAUG 20 9511
BCLllA-9304 - CGCGCCCUGCCCGACGUCAUG 21 9512
BCLllA-9305 - CCGCGCCCUGCCCGACGUCAUG 22 9513
BCLllA-9306 - GCCGCGCCCUGCCCGACGUCAUG 23 9514
BCLllA-9307 - AGCCGCGCCCUGCCCGACGUCAUG 24 9515
BCLllA-9308 - CGACACUUGUGAGUACUG 18 9516
BCLllA-9309 - GCGACACUUGUGAGUACUG 19 9517
BCLllA-6169 - AGCGACACUUGUGAGUACUG 20 9518
BCLllA-9310 - CAGCGACACUUGUGAGUACUG 21 9519
BCLllA-9311 - GCAGCGACACUUGUGAGUACUG 22 9520
BCLllA-9312 - CGCAGCGACACUUGUGAGUACUG 23 9521 BCLllA-9313 - ACGCAGCGACACUUGUGAGUACUG 24 9522
BCLllA-9314 - GAGGAGGAGGAGGAGCUG 18 9523
BCLllA-9315 - AGAGGAGGAGGAGGAGCUG 19 9524
BCLllA-9316 - AAGAGGAGGAGGAGGAGCUG 20 9525
BCLllA-9317 - GAAGAGGAGGAGGAGGAGCUG 21 9526
BCLllA-9318 - GGAAGAGGAGGAGGAGGAGCUG 22 9527
BCLllA-9319 - AGGAAGAGGAGGAGGAGGAGCUG 23 9528
BCLllA-9320 - GAGGAAGAGGAGGAGGAGGAGCUG 24 9529
BCLllA-9321 - CUGUCCAAAAAGCUGCUG 18 9530
BCLllA-9322 - CCUGUCCAAAAAGCUGCUG 19 9531
BCLllA-9323 - GCCUGUCCAAAAAGCUGCUG 20 9532
BCLllA-9324 - GGCCUGUCCAAAAAGCUGCUG 21 9533
BCLllA-9325 - GGGCCUGUCCAAAAAGCUGCUG 22 9534
BCLllA-9326 - GGGGCCUGUCCAAAAAGCUGCUG 23 9535
BCLllA-9327 - GGGGGCCUGUCCAAAAAGCUGCUG 24 9536
BCLllA-9328 - GCAGCGGCACGGGAAGUG 18 9537
BCLllA-9329 - CGCAGCGGCACGGGAAGUG 19 9538
BCLllA-9330 - GCGCAGCGGCACGGGAAGUG 20 9539
BCLllA-9331 - GGCGCAGCGGCACGGGAAGUG 21 9540
BCLllA-9332 - GGGCGCAGCGGCACGGGAAGUG 22 9541
BCLllA-9333 - GGGGCGCAGCGGCACGGGAAGUG 23 9542
BCLllA-9334 - CGGGGCGCAGCGGCACGGGAAGUG 24 9543
BCLllA-9335 - CCCGGCACCAGCGACUUG 18 9544
BCLllA-9336 - ACCCGGCACCAGCGACUUG 19 9545
BCLllA-9337 - AACCCGGCACCAGCGACUUG 20 9546
BCLllA-9338 - GAACCCGGCACCAGCGACUUG 21 9547
BCLllA-9339 - GGAACCCGGCACCAGCGACUUG 22 9548
BCLllA-9340 - CGGAACCCGGCACCAGCGACUUG 23 9549
BCLllA-9341 - CCGGAACCCGGCACCAGCGACUUG 24 9550
BCLllA-9342 - CUUAAGUUCUGAGAAAAU 18 9551
BCLllA-9343 - CCUUAAGUUCUGAGAAAAU 19 9552
BCLllA-9344 - CCCUUAAGUUCUGAGAAAAU 20 9553
BCLllA-9345 - GCCCUUAAGUUCUGAGAAAAU 21 9554
BCLllA-9346 - AGCCCUUAAGUUCUGAGAAAAU 22 9555
BCLllA-9347 - GAGCCCUUAAGUUCUGAGAAAAU 23 9556
BCLllA-9348 - AGAGCCCUUAAGUUCUGAGAAAAU 24 9557
BCLllA-9349 - GGAUUUCUCUAGGAGACU 18 9558
BCLllA-9350 - UGGAUUUCUCUAGGAGACU 19 9559
BCLllA-9351 - AUGGAUUUCUCUAGGAGACU 20 9560
BCLllA-9352 - CAUGGAUUUCUCUAGGAGACU 21 9561
BCLllA-9353 - CCAUGGAUUUCUCUAGGAGACU 22 9562
BCLllA-9354 - GCCAUGGAUUUCUCUAGGAGACU 23 9563 BCLllA-9355 - CGCCAUGGAUUUCUCUAGGAGACU 24 9564
BCLllA-9356 - AUGGAUUAAGAAUCUACU 18 9565
BCLllA-9357 - CAUGGAUUAAGAAUCUACU 19 9566
BCLllA-9358 - UCAUGGAUUAAGAAUCUACU 20 9567
BCLllA-9359 - CUCAUGGAUUAAGAAUCUACU 21 9568
BCLllA-9360 - ACUCAUGGAUUAAGAAUCUACU 22 9569
BCLllA-9361 - CACUCAUGGAUUAAGAAUCUACU 23 9570
BCLllA-9362 - ACACUCAUGGAUUAAGAAUCUACU 24 9571
BCLllA-9363 - GCGACACUUGUGAGUACU 18 9572
BCLllA-9364 - AGCGACACUUGUGAGUACU 19 9573
BCLllA-9365 - CAGCGACACUUGUGAGUACU 20 9574
BCLllA-9366 - GCAGCGACACUUGUGAGUACU 21 9575
BCLllA-9367 - CGCAGCGACACUUGUGAGUACU 22 9576
BCLllA-9368 - ACGCAGCGACACUUGUGAGUACU 23 9577
BCLllA-9369 - GACGCAGCGACACUUGUGAGUACU 24 9578
BCLllA-9370 - CCACCGCAUAGAGCGCCU 18 9579
BCLllA-9371 - CCCACCGCAUAGAGCGCCU 19 9580
BCLllA-6197 - CCCCACCGCAUAGAGCGCCU 20 9581
BCLllA-9372 - CCCCCACCGCAUAGAGCGCCU 21 9582
BCLllA-9373 - ACCCCCACCGCAUAGAGCGCCU 22 9583
BCLllA-9374 - GACCCCCACCGCAUAGAGCGCCU 23 9584
BCLllA-9375 - GGACCCCCACCGCAUAGAGCGCCU 24 9585
BCLllA-9376 - CCCCGGGCGAGUCGGCCU 18 9586
BCLllA-9377 - UCCCCGGGCGAGUCGGCCU 19 9587
BCLllA-6200 - CUCCCCGGGCGAGUCGGCCU 20 9588
BCLllA-9378 - GCUCCCCGGGCGAGUCGGCCU 21 9589
BCLllA-9379 - UGCUCCCCGGGCGAGUCGGCCU 22 9590
BCLllA-9380 - CUGCUCCCCGGGCGAGUCGGCCU 23 9591
BCLllA-9381 - GCUGCUCCCCGGGCGAGUCGGCCU 24 9592
BCLllA-9382 - CCUCGUCGGAGCACUCCU 18 9593
BCLllA-9383 - UCCUCGUCGGAGCACUCCU 19 9594
BCLllA-6202 - CUCCUCGUCGGAGCACUCCU 20 9595
BCLllA-9384 - CCUCCUCGUCGGAGCACUCCU 21 9596
BCLllA-9385 - GCCUCCUCGUCGGAGCACUCCU 22 9597
BCLllA-9386 - UGCCUCCUCGUCGGAGCACUCCU 23 9598
BCLllA-9387 - UUGCCUCCUCGUCGGAGCACUCCU 24 9599
BCLllA-9388 - AAGAUCCCUUCCUUAGCU 18 9600
BCLllA-9389 - AAAGAUCCCUUCCUUAGCU 19 9601
BCLllA-9390 - CAAAGAUCCCUUCCUUAGCU 20 9602
BCLllA-9391 - UCAAAGAUCCCUUCCUUAGCU 21 9603
BCLllA-9392 - CUCAAAGAUCCCUUCCUUAGCU 22 9604
BCLllA-9393 - GCUCAAAGAUCCCUUCCUUAGCU 23 9605 BCLllA-9394 - AGCUCAAAGAUCCCUUCCUUAGCU 24 9606
BCLllA-9395 - AGAGGGUGGACUACGGCU 18 9607
BCLllA-9396 - GAGAGGGUGGACUACGGCU 19 9608
BCLllA-9397 - CGAGAGGGUGGACUACGGCU 20 9609
BCLllA-9398 - GCGAGAGGGUGGACUACGGCU 21 9610
BCLllA-9399 - AGCGAGAGGGUGGACUACGGCU 22 9611
BCLllA-9400 - GAGCGAGAGGGUGGACUACGGCU 23 9612
BCLllA-9401 - AGAGCGAGAGGGUGGACUACGGCU 24 9613
BCLllA-9402 - CGGUUGAAUCCAAUGGCU 18 9614
BCLllA-9403 - GCGGUUGAAUCCAAUGGCU 19 9615
BCLllA-9404 - UGCGGUUGAAUCCAAUGGCU 20 9616
BCLllA-9405 - CUGCGGUUGAAUCCAAUGGCU 21 9617
BCLllA-9406 - GCUGCGGUUGAAUCCAAUGGCU 22 9618
BCLllA-9407 - UGCUGCGGUUGAAUCCAAUGGCU 23 9619
BCLllA-9408 - GUGCUGCGGUUGAAUCCAAUGGCU 24 9620
BCLllA-9409 - AGCUGGACGGAGGGAUCU 18 9621
BCLllA-9410 - GAGCUGGACGGAGGGAUCU 19 9622
BCLllA-6210 - GGAGCUGGACGGAGGGAUCU 20 9623
BCLllA-9411 - GGGAGCUGGACGGAGGGAUCU 21 9624
BCLllA-9412 - GGGGAGCUGGACGGAGGGAUCU 22 9625
BCLllA-9413 - CGGGGAGCUGGACGGAGGGAUCU 23 9626
BCLllA-9414 - CCGGGGAGCUGGACGGAGGGAUCU 24 9627
BCLllA-9415 - CCCGCCAUGGAUUUCUCU 18 9628
BCLllA-9416 - UCCCGCCAUGGAUUUCUCU 19 9629
BCLllA-6212 - CUCCCGCCAUGGAUUUCUCU 20 9630
BCLllA-9417 - CCUCCCGCCAUGGAUUUCUCU 21 9631
BCLllA-9418 - GCCUCCCGCCAUGGAUUUCUCU 22 9632
BCLllA-9419 - AGCCUCCCGCCAUGGAUUUCUCU 23 9633
BCLllA-9420 - GAGCCUCCCGCCAUGGAUUUCUCU 24 9634
BCLllA-9421 - CGAGAGCCCUUAAGUUCU 18 9635
BCLllA-9422 - UCGAGAGCCCUUAAGUUCU 19 9636
BCLllA-9423 - CUCGAGAGCCCUUAAGUUCU 20 9637
BCLllA-9424 - GCUCGAGAGCCCUUAAGUUCU 21 9638
BCLllA-9425 - AGCUCGAGAGCCCUUAAGUUCU 22 9639
BCLllA-9426 - AAGCUCGAGAGCCCUUAAGUUCU 23 9640
BCLllA-9427 - GAAGCUCGAGAGCCCUUAAGUUCU 24 9641
BCLllA-9428 - CGCCUUUUGCCUCCUCGU 18 9642
BCLllA-9429 - UCGCCUUUUGCCUCCUCGU 19 9643
BCLllA-6220 - AUCGCCUUUUGCCUCCUCGU 20 9644
BCLllA-9430 - AAUCGCCUUUUGCCUCCUCGU 21 9645
BCLllA-9431 - CAAUCGCCUUUUGCCUCCUCGU 22 9646
BCLllA-9432 - ACAAUCGCCUUUUGCCUCCUCGU 23 9647 BCLllA-9433 - GACAAUCGCCUUUUGCCUCCUCGU 24 9648
BCLllA-9434 - ACGCCCCAUAUUAGUGGU 18 9649
BCLllA-9435 - CACGCCCCAUAUUAGUGGU 19 9650
BCLllA-9436 - GCACGCCCCAUAUUAGUGGU 20 9651
BCLllA-9437 - AGCACGCCCCAUAUUAGUGGU 21 9652
BCLllA-9438 - GAGCACGCCCCAUAUUAGUGGU 22 9653
BCLllA-9439 - GGAGCACGCCCCAUAUUAGUGGU 23 9654
BCLllA-9440 - GGGAGCACGCCCCAUAUUAGUGGU 24 9655
BCLllA-9441 - GACACUUGUGAGUACUGU 18 9656
BCLllA-9442 - CGACACUUGUGAGUACUGU 19 9657
BCLllA-6230 - GCGACACUUGUGAGUACUGU 20 9658
BCLllA-9443 - AGCGACACUUGUGAGUACUGU 21 9659
BCLllA-9444 - CAGCGACACUUGUGAGUACUGU 22 9660
BCLllA-9445 - GCAGCGACACUUGUGAGUACUGU 23 9661
BCLllA-9446 - CGCAGCGACACUUGUGAGUACUGU 24 9662
BCLllA-9447 - CGCGGGUUGGUAUCCCUU 18 9663
BCLllA-9448 - CCGCGGGUUGGUAUCCCUU 19 9664
BCLllA-9449 - CCCGCGGGUUGGUAUCCCUU 20 9665
BCLllA-9450 - CCCCGCGGGUUGGUAUCCCUU 21 9666
BCLllA-9451 - ACCCCGCGGGUUGGUAUCCCUU 22 9667
BCLllA-9452 - GACCCCGCGGGUUGGUAUCCCUU 23 9668
BCLllA-9453 - UGACCCCGCGGGUUGGUAUCCCUU 24 9669
BCLllA-9454 - AGAUCCCUUCCUUAGCUU 18 9670
BCLllA-9455 - AAGAUCCCUUCCUUAGCUU 19 9671
BCLllA-6234 - AAAGAUCCCUUCCUUAGCUU 20 9672
BCLllA-9456 - CAAAGAUCCCUUCCUUAGCUU 21 9673
BCLllA-9457 - UCAAAGAUCCCUUCCUUAGCUU 22 9674
BCLllA-9458 - CUCAAAGAUCCCUUCCUUAGCUU 23 9675
BCLllA-9459 - GCUCAAAGAUCCCUUCCUUAGCUU 24 9676
BCLllA-9460 - CUCGAGAGCCCUUAAGUU 18 9677
BCLllA-9461 - GCUCGAGAGCCCUUAAGUU 19 9678
BCLllA-9462 - AGCUCGAGAGCCCUUAAGUU 20 9679
BCLllA-9463 - AAGCUCGAGAGCCCUUAAGUU 21 9680
BCLllA-9464 - GAAGCUCGAGAGCCCUUAAGUU 22 9681
BCLllA-9465 - GGAAGCUCGAGAGCCCUUAAGUU 23 9682
BCLllA-9466 - UGGAAGCUCGAGAGCCCUUAAGUU 24 9683
BCLllA-9467 - GGCAAGACGUUCAAAUUU 18 9684
BCLllA-9468 - CGGCAAGACGUUCAAAUUU 19 9685
BCLllA-9469 - GCGGCAAGACGUUCAAAUUU 20 9686
BCLllA-9470 - UGCGGCAAGACGUUCAAAUUU 21 9687
BCLllA-9471 - CUGCGGCAAGACGUUCAAAUUU 22 9688
BCLllA-9472 - UCUGCGGCAAGACGUUCAAAUUU 23 9689 BCLllA-9473 - U UCUGCGGCAAGACGUUCAAAUUU 24 9690
Table 14A provides exemplary targeting domains for knocking out the BCL11A gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 14A
Figure imgf000374_0001
Table 14B provides exemplary targeting domains for knocking out the BCL11A gene selected according to the third tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 14B
Figure imgf000375_0001
BCLllA-9517 + GCGAGCUGGGGCUGCCCAGC 20 9743
BCLllA-9518 - AUGGCUAUGGAGCCUCCCGC 20 9744
BCLllA-9519 + CCUCGGCCAGGUGGCCGCGC 20 9745
BCLllA-9520 + UGUGCGUCUUCAUGUGGCGC 20 9746
BCLllA-7725 + UUCUCAGAACUUAAGGGCUC 20 9747
BCLllA-9521 - GGCAGCUCAAAGAUCCCUUC 20 9748
BCLllA-7752 + GGGGCAGGUCGAACUCCUUC 20 9749
BCLllA-9522 + GGGGGGGCGUCGCCAGGAAG 20 9750
BCLllA-9523 - AUACCAGGAUCAGUAUCGAG 20 9751
BCLllA-9524 + GGGGGCUGGGAGGGAGGAGG 20 9752
BCLllA-9525 + UCGGACUUGACCGUCAUGGG 20 9753
BCLllA-9526 + CCUCGGCCUCGGCCAGGUGG 20 9754
BCLllA-6165 + UGUGCAUGUGCGUCUUCAUG 20 9755
BCLllA-8204 + GGUCGCACAGGUUGCACUUG 20 9756
BCLllA-9527 + CGAACUCCUUCUCGAGCUUG 20 9757
BCLllA-9528 - UGCAACACGCACAGAACACU 20 9758
BCLllA-9529 - ACUCCUCGGAGAACGGGAGU 20 9759
BCLllA-9530 + CGGGGUCAGGGGACUUCCGU 20 9760
Table 15A provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of
orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or
eliminateBCLl 1 A gene expression, BCLl 1 A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 15A
Figure imgf000376_0001
BCLllA-9535 - GCGCUCGCUGCGGCCAC 17 9767
BCLllA-4560 + ACGCCAGACGCGGCCCC 17 9768
BCLllA-9536 + U UCACAUCGGGAGAGCC 17 9769
BCLllA-9537 + GU UCACAUCGGGAGAGC 17 9770
BCLllA-9538 - UAAUCACGAGAGCGCGC 17 9771
BCLllA-9539 - CUGACGUUCAAGUUCGC 17 9772
BCLllA-5327 + CCCGUUUGCUUAAGUGC 17 9773
BCLllA-9540 + ACGGCUCGGUUCACAUC 17 9774
BCLllA-9541 + CUUGAACGUCAGGAGUC 17 9775
BCLllA-9542 + CUGCGAACUUGAACGUC 17 9776
BCLllA-9543 - CCCCCGGGGGCCGCGUC 17 9777
BCLllA-9544 + UCCGCGGACGCCAGACG 17 9778
BCLllA-9545 - G ACU AG AAG CAAAAG CG 17 9779
BCLllA-5335 + AGACAUGGUGGGCUGCG 17 9780
BCLllA-9546 - AAAACCU CCG AG AG U CG 17 9781
BCLllA-9547 + U UUACCUCGACUCUCGG 17 9782
BCLllA-9548 - AGUCCGCGUGUGUGGGG 17 9783
BCLllA-5336 + CGUUUGCU UAAGUGCUG 17 9784
BCLllA-9549 - UAGAGUCCGCGUGUGUG 17 9785
BCLllA-9550 + GACGGCUCGGUUCACAU 17 9786
BCLllA-9551 - CUCCCCGCACUGGCCAU 17 9787
BCLllA-9552 + CGGCAAUGGUUCCAGAU 17 9788
BCLllA-9553 + GCGGGCGGACGACGGCU 17 9789
BCLllA-5338 + CCGUUUGCUUAAGUGCU 17 9790
BCLllA-5340 + UUGCGGCGAGACAUGGU 17 9791
BCLllA-9554 + CGUGGCCGGGAGAGAAGAAA 20 9792
BCLllA-5345 + GCCUUGCUUGCGGCGAGACA 20 9793
BCLllA-5346 - ACCAUGUCUCGCCGCAAGCA 20 9794
BCLllA-9555 - UCCUGACGUUCAAGUUCGCA 20 9795
BCLllA-9556 + ACACCAAUGGACACACAUCA 20 9796
BCLllA-9557 + UACACGGCAAUGGUUCCAGA 20 9797
BCLllA-9558 + GCCAAUGGCCAGUGCGGGGA 20 9798
BCLllA-9559 + AAUGGUUCCAGAUGGGAUGA 20 9799
BCLllA-9560 - GAGUCUCCUUCUU UCUAACC 20 9800
BCLllA-9561 + CGGUUCACAUCGGGAGAGCC 20 9801
BCLllA-9562 + UCGGUUCACAUCGGGAGAGC 20 9802
BCLllA-9563 - CCGCGUGUGUGGGGGGGAGC 20 9803
BCLllA-9564 - UAAUAAUCACGAGAGCGCGC 20 9804
BCLllA-9565 + AAAUAAUACAAAGAUGGCGC 20 9805
BCLllA-9566 - CUCCUGACGU UCAAGUUCGC 20 9806
BCLllA-9567 + GAGACACACAAAACAUGGGC 20 9807
BCLllA-5352 + AUUCCCGUUUGCU UAAGUGC 20 9808 BCLllA-9568 + ACGACGGCUCGGUUCACAUC 20 9809
BCLllA-9569 - CGCACUUGAACUUGCAGCUC 20 9810
BCLllA-9570 + UCCCUGCGAACUUGAACGUC 20 9811
BCLllA-9571 - U CG AGG U AAAAG AG AU AAAG 20 9812
BCLllA-9572 + CCAAUGGCCAGUGCGGGGAG 20 9813
BCLllA-4351 + GACGCCAGACGCGGCCCCCG 20 9814
BCLllA-9573 - UGCGGCCACUGGUGAGCCCG 20 9815
BCLllA-9574 - GGGGCCGCGUCUGGCGUCCG 20 9816
BCLllA-5359 + GCGAGACAUGGUGGGCUGCG 20 9817
BCLllA-9575 - AGAAAAACCUCCGAGAGUCG 20 9818
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 9819
BCLllA-9576 + UCU UUUACCUCGACUCUCGG 20 9820
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 9821
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 9822
BCLllA-9579 + CAAUGGUUCCAGAUGGGAUG 20 9823
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 9824
BCLllA-9580 + CUGAGCUGCAAGU UCAAGUG 20 9825
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 9826
BCLllA-9582 + GACGACGGCUCGGUUCACAU 20 9827
BCLllA-9583 - AGCCCCUGAUGUGUGUCCAU 20 9828
BCLllA-9584 + GCGGCGGGCGGACGACGGCU 20 9829
BCLllA-9585 + AUCUCUUU UACCUCGACUCU 20 9830
BCLllA-5365 + UGCUUGCGGCGAGACAUGGU 20 9831
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 9832
Table 15B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1A gene.
Table 15B
Figure imgf000378_0001
BCLllA-9587 + GAGAGAGAUGAAAAAAA 17 9833
BCLllA-5369 - CCCAGCACUUAAGCAAA 17 9834
BCLllA-9588 - UUAUUUUGGAUGUCAAA 17 9835
BCLllA-4473 + GGCCGGGAGAGAAGAAA 17 9836
BCLllA-9589 + GCAGGGGUGGGAGGAAA 17 9837
BCLllA-9590 - G AGG U AAAAG AG AU AAA 17 9838
BCLllA-9591 + AAU U AAAU AAAAU U AAA 17 9839
BCLllA-9592 + GGGGAAGCUCACACCAA 17 9840
BCLllA-4574 + AGACCAGGACAAGCCAA 17 9841
BCLllA-9593 + UGGCCGGGAGAGAAGAA 17 9842
BCLllA-4491 + GGGCGAGCAGGAGAGAA 17 9843
BCLllA-9594 + GGCAGGGGUGGGAGGAA 17 9844
BCLllA-4570 + AGAAGGGGAGGAGGGAA 17 9845
BCLllA-9595 - CG AGG U AAAAG AG AU AA 17 9846
BCLllA-4625 + CAGAGACACACAAAACA 17 9847
BCLllA-9596 + U C U C A A A AG U G C A U AC A 17 9848
BCLllA-9597 - GUGUGUGGGGGGGAGCA 17 9849
BCLllA-9598 + A A U AC A A AG A U G G CG C A 17 9850
BCLllA-9599 + CACACAAAACAUGGGCA 17 9851
BCLllA-9600 + AGAAGAAAGGGGUGGCA 17 9852
BCLllA-9601 + CCAAUGGACACACAUCA 17 9853
BCLllA-9602 - CUUGAACUUGCAGCUCA 17 9854
BCLllA-4529 + AAAAAAAAAAAAAAAGA 17 9855
BCLllA-9603 + U AG AAA U A A U AC A A AG A 17 9856
BCLllA-9604 + GAGCCGGGUUAGAAAGA 17 9857
BCLllA-4592 + AGGGCGAGCAGGAGAGA 17 9858
BCLllA-4534 - AAAGCGAGGGGGAGAGA 17 9859
BCLllA-9605 + GAGAGAAGAGAGAUAGA 17 9860
BCLllA-4674 + CGGCGGCGGGCGGACGA 17 9861
BCLllA-4494 + GGGGAGGGGCGGGCCGA 17 9862
BCLllA-9606 - ACU AG AAG CAAAAG CG A 17 9863
BCLllA-4591 + AGGAGAGAAGGGGAGGA 17 9864
BCLllA-4399 + GAGAAGGGGAGGAGGGA 17 9865
BCLllA-4499 + GGGGCGGGCCGAGGGGA 17 9866
BCLllA-9607 + AAUGGCCAGUGCGGGGA 17 9867
BCLllA-4562 + ACGCGGCCCCCGGGGGA 17 9868
BCLllA-9608 + AACGUCAGGAGUCUGGA 17 9869
BCLllA-9609 - U U A A A A A A A AG C C A U G A 17 9870
BCLllA-9610 + GGUUCCAGAUGGGAUGA 17 9871
BCLllA-5383 - CCAGCACUUAAGCAAAC 17 9872
BCLllA-9611 - CCUCCCCCUCCCCGCAC 17 9873
BCLllA-9612 - UCUCCU UCUUUCUAACC 17 9874 BCLllA-9613 + GACAUGAAAAAGAGACC 17 9875
BCLllA-4662 + CGCCAGACGCGGCCCCC 17 9876
BCLllA-9614 - CGGCCCGCCCCUCCCCC 17 9877
BCLllA-9615 - UCGGCCCGCCCCUCCCC 17 9878
BCLllA-9616 + GCGGCGGUGGCGUGGCC 17 9879
BCLllA-9617 - ACCCCUU UCU UCUCUCC 17 9880
BCLllA-9618 - UGGCCAUUGGCUUGUCC 17 9881
BCLllA-9619 + ACAUGGGCAGGGCGAGC 17 9882
BCLllA-9620 - CGUGUGUGGGGGGGAGC 17 9883
BCLllA-9621 + GGGGGCGCUGGGGCCGC 17 9884
BCLllA-4646 + CCGAGGGGAGGGGGCGC 17 9885
BCLllA-9622 + UAAUACAAAGAUGGCGC 17 9886
BCLllA-4441 + GCGGCGGCGGCGGCGGC 17 9887
BCLllA-9623 + GGACACACAUCAGGGGC 17 9888
BCLllA-4429 + GCCCCCGGGGGAGGGGC 17 9889
BCLllA-5392 + AUGGUGGGCUGCGGGGC 17 9890
BCLllA-9624 + AGGGGGAGGUGCGGGGC 17 9891
BCLllA-9625 + ACACACAAAACAUGGGC 17 9892
BCLllA-9626 + CGCGGCGGUGGCGUGGC 17 9893
BCLllA-9627 + GAGAAGAAAGGGGUGGC 17 9894
BCLllA-5395 + GAGACAUGGUGGGCUGC 17 9895
BCLllA-9628 + AAGCCAAUGGCCAGUGC 17 9896
BCLllA-9629 + CGGGGAGGGGGAGGUGC 17 9897
BCLllA-9630 + ACCAAUGGACACACAUC 17 9898
BCLllA-9631 - AAAACCCUCAUCCCAUC 17 9899
BCLllA-9632 - ACUUGAACUUGCAGCUC 17 9900
BCLllA-9633 - GAUGAAGAUAUUUUCUC 17 9901
BCLllA-4528 + AAAAAAAAAAAAAAAAG 17 9902
BCLllA-4433 + GCCGGGAGAGAAGAAAG 17 9903
BCLllA-9634 - AG G U A A A AG AG A U A A AG 17 9904
BCLllA-4475 + GG CG AG CAGG AG AG AAG 17 9905
BCLllA-4389 + GAAGGGGAGGAGGGAAG 17 9906
BCLllA-9635 + GGCCGCGGGCUCACCAG 17 9907
BCLllA-9636 + G A AG A A AG GGGUGGCAG 17 9908
BCLllA-9637 + CAAUGGACACACAUCAG 17 9909
BCLllA-9638 - UUGAACUUGCAGCUCAG 17 9910
BCLllA-4543 - AAGCGAGGGGGAGAGAG 17 9911
BCLllA-4533 - AAAAGCGAGGGGGAGAG 17 9912
BCLllA-4485 + GGGAGGGGCGGGCCGAG 17 9913
BCLllA-9639 - CUAGAAGCAAAAGCGAG 17 9914
BCLllA-4492 + GGGCGGGCCGAGGGGAG 17 9915
BCLllA-9640 + AUGGCCAGUGCGGGGAG 17 9916 BCLllA-4665 + CGCGGCCCCCGGGGGAG 17 9917
BCLllA-9641 + AGAGAGAAGAGAGAUAG 17 9918
BCLllA-9642 + GCUCCCCCCCACACACG 17 9919
BCLllA-4427 + GCCAGACGCGGCCCCCG 17 9920
BCLllA-9643 - GGCCCGCCCCUCCCCCG 17 9921
BCLllA-9644 - GGCCACUGGUGAGCCCG 17 9922
BCLllA-4670 - CGGCCACGCCACCGCCG 17 9923
BCLllA-4470 + GGCCGCAGCGAGCGCCG 17 9924
BCLllA-4502 + GGGGGAGGGGCGGGCCG 17 9925
BCLllA-9645 + AGGGGGCGCUGGGGCCG 17 9926
BCLllA-9646 + CGGGGCGGGGGGCUCCG 17 9927
BCLllA-9647 - GCCGCGUCUGGCGUCCG 17 9928
BCLllA-9648 + GGGGGAGGUGCGGGGCG 17 9929
BCLllA-9649 + GCGCCGCGGCGGUGGCG 17 9930
BCLllA-9650 + AGCCAAUGGCCAGUGCG 17 9931
BCLllA-9651 + GGGGAGGGGGAGGUGCG 17 9932
BCLllA-9652 - G G U A A A AG AG A U A A AG G 17 9933
BCLllA-9653 - UGAACUUGCAGCUCAGG 17 9934
BCLllA-9654 - U AG AAG CAAAAG CG AGG 17 9935
BCLllA-4627 + CAGGAGAGAAGGGGAGG 17 9936
BCLllA-4480 + GGCGGGCCGAGGGGAGG 17 9937
BCLllA-9655 + UGGCCAGUGCGGGGAGG 17 9938
BCLllA-4634 + CCAGACGCGGCCCCCGG 17 9939
BCLllA-9656 - GCCCGCCCCUCCCCCGG 17 9940
BCLllA-4660 + CG CAG CG AG CG CCG CG G 17 9941
BCLllA-4588 + AGCGAGCGCCGCGGCGG 17 9942
BCLllA-4478 + GGCGGCGGCGGCGGCGG 17 9943
BCLllA-4447 + GCGGGCGGCGGCGGCGG 17 9944
BCLllA-4500 + GGGGCGGGCGGCGGCGG 17 9945
BCLllA-5409 + UGCGGGGCGGGCGGCGG 17 9946
BCLllA-5410 + GGCUGCGGGGCGGGCGG 17 9947
BCLllA-9657 + GGGGAGGUGCGGGGCGG 17 9948
BCLllA-9658 + GGGGUGGGAGGAAAGGG 17 9949
BCLllA-9659 - GAACUUGCAGCUCAGGG 17 9950
BCLllA-4444 + GCGGCGGCGGCGGCGGG 17 9951
BCLllA-5411 + GUGGGCUGCGGGGCGGG 17 9952
BCLllA-9660 + GGGAGGUGCGGGGCGGG 17 9953
BCLllA-4483 + GGGAGAGAAGAAAGGGG 17 9954
BCLllA-4407 + GAGCAGGAGAGAAGGGG 17 9955
BCLllA-9661 + GAAAGGGGUGGCAGGGG 17 9956
BCLllA-4593 + AGGGGCGGGCCGAGGGG 17 9957
BCLllA-4467 + GGCCCCCGGGGGAGGGG 17 9958 BCLllA-5413 + CAUGGUGGGCUGCGGGG 17 9959
BCLllA-9662 + CAAUGGCCAGUGCGGGG 17 9960
BCLllA-9663 + GAGGGGGAGGUGCGGGG 17 9961
BCLllA-9664 + CCAGUGCGGGGAGGGGG 17 9962
BCLllA-4395 + GACGCGGCCCCCGGGGG 17 9963
BCLllA-9665 + GGGAGGAAAGGGUGGGG 17 9964
BCLllA-9666 + UGGGAGGAAAGGGUGGG 17 9965
BCLllA-9667 + GGGGUGGCAGGGGUGGG 17 9966
BCLllA-9668 - GAGUCCGCGUGUGUGGG 17 9967
BCLllA-5414 + CUUGCGGCGAGACAUGG 17 9968
BCLllA-9669 + GUGGGAGGAAAGGGUGG 17 9969
BCLllA-9670 - AGAGUCCGCGUGUGUGG 17 9970
BCLllA-9671 + UGGUUCCAGAUGGGAUG 17 9971
BCLllA-9672 + GAGGGGAGGGGGCGCUG 17 9972
BCLllA-9673 - CGCCGCGGCGCUCGCUG 17 9973
BCLllA-5422 + CGAGACAUGGUGGGCUG 17 9974
BCLllA-9674 + AG C U G C A AG U U C A AG U G 17 9975
BCLllA-9675 + CAAGCCAAUGGCCAGUG 17 9976
BCLllA-9676 + GCGGGGAGGGGGAGGUG 17 9977
BCLllA-9677 + GGUGGGAGGAAAGGGUG 17 9978
BCLllA-9678 - U UUAGAGUCCGCGUGUG 17 9979
BCLllA-9679 + GCAGGGAAGAUGAAUUG 17 9980
BCLllA-5426 + GGGGUUUGCCUUGCUUG 17 9981
BCLllA-9680 + AGAGACACACAAAACAU 17 9982
BCLllA-9681 - CCCUGAUGUGUGUCCAU 17 9983
BCLllA-5431 + AUUAUUAUUACUAUUAU 17 9984
BCLllA-9682 - CCAGCGCCCCCUCCCCU 17 9985
BCLllA-9683 + CGAGGGGAGGGGGCGCU 17 9986
BCLllA-9684 + UCUUUUACCUCGACUCU 17 9987
BCLllA-9685 + GGGUGGGAGGAAAGGGU 17 9988
BCLllA-9686 + AAAGGGGUGGCAGGGGU 17 9989
BCLllA-9687 - U UAGAGUCCGCGUGUGU 17 9990
BCLllA-9688 + CAGGGAAGAUGAAUUGU 17 9991
BCLllA-5439 + U UAUUAUUACUAUUAU U 17 9992
BCLllA-9689 - U UAUUUCUAAUUUAU UU 17 9993
BCLllA-9690 + AGAGAGAGAGAUGAAAAAAA 20 9994
BCLllA-5443 - AACCCCAGCACUUAAGCAAA 20 9995
BCLllA-9691 - AAUUUAUUUUGGAUGUCAAA 20 9996
BCLllA-9692 + GUGGCAGGGGUGGGAGGAAA 20 9997
BCLllA-9693 - GUCGAGGUAAAAGAGAUAAA 20 9998
BCLllA-9694 + UAAAAU U AAAU AAAAU U AAA 20 9999
BCLllA-9695 + GAAGGGGAAGCUCACACCAA 20 10000 BCLllA-4541 + AAGAGACCAGGACAAGCCAA 20 10001
BCLllA-9696 + CAAAAGUGCAUACACGGCAA 20 10002
BCLllA-9697 + GCGUGGCCGGGAGAGAAGAA 20 10003
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 10004
BCLllA-9698 + GGUGGCAGGGGUGGGAGGAA 20 10005
BCLllA-4404 + GAGAGAAGGGGAGGAGGGAA 20 10006
BCLllA-9699 - AGUCGAGGUAAAAGAGAUAA 20 10007
BCLllA-4455 + GGACAGAGACACACAAAACA 20 10008
BCLllA-9700 + CUGUCUCAAAAGUGCAUACA 20 10009
BCLllA-9701 - CGCGUGUGUGGGGGGGAGCA 20 10010
BCLllA-9702 + AAUAAUACAAAGAUGGCGCA 20 10011
BCLllA-9703 + AGACACACAAAACAUGGGCA 20 10012
BCLllA-9704 + G AG AG A AG A A AG G G G U G G C A 20 10013
BCLllA-9705 - GCACU UGAACUUGCAGCUCA 20 10014
BCLllA-9706 + GAAUUGUGGGAGAGCCGUCA 20 10015
BCLllA-4527 + AAAAAAAAAAAAAAAAAAGA 20 10016
BCLllA-9707 + AAU U AG AAA U A A U AC A A AG A 20 10017
BCLllA-9708 + GGAGAGCCGGGUUAGAAAGA 20 10018
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 10019
BCLllA-4418 - GCAAAAGCGAGGGGGAGAGA 20 10020
BCLllA-9709 + AGAGAGAGAAGAGAGAUAGA 20 10021
BCLllA-4673 + CGGCGGCGGCGGGCGGACGA 20 10022
BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 10023
BCLllA-9710 - AGGACUAGAAGCAAAAGCGA 20 10024
BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 10025
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 10026
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 10027
BCLllA-4624 + CAGACGCGGCCCCCGGGGGA 20 10028
BCLllA-9711 + U UGAACGUCAGGAGUCUGGA 20 10029
BCLllA-9712 - UGCU UAAAAAAAAGCCAUGA 20 10030
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 10031
BCLllA-9713 - GCGGCGCUCGCUGCGGCCAC 20 10032
BCLllA-9714 - GCACCUCCCCCUCCCCGCAC 20 10033
BCLllA-9715 + CUGGACAUGAAAAAGAGACC 20 10034
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 10035
BCLllA-9716 - CCUCGGCCCGCCCCUCCCCC 20 10036
BCLllA-4362 + CGGACGCCAGACGCGGCCCC 20 10037
BCLllA-9717 - CCCUCGGCCCGCCCCUCCCC 20 10038
BCLllA-9718 + GCCGCGGCGGUGGCGUGGCC 20 10039
BCLllA-9719 - GCCACCCCUUUCUUCUCUCC 20 10040
BCLllA-9720 - CACUGGCCAU UGGCU UGUCC 20 10041
BCLllA-9721 + AAAACAUGGGCAGGGCGAGC 20 10042 BCLllA-9722 + GGAGGGGGCGCUGGGGCCGC 20 10043
BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 10044
BCLllA-4442 + GCGGCGGCGGCGGCGGCGGC 20 10045
BCLllA-9723 + AAUGGACACACAUCAGGGGC 20 10046
BCLllA-4439 + GCGGCCCCCGGGGGAGGGGC 20 10047
BCLllA-5465 + GACAUGGUGGGCUGCGGGGC 20 10048
BCLllA-9724 + GGGAGGGGGAGGUGCGGGGC 20 10049
BCLllA-9725 + CGCCGCGGCGGUGGCGUGGC 20 10050
BCLllA-9726 + GGAGAGAAGAAAGGGGUGGC 20 10051
BCLllA-5468 + GGCGAGACAUGGUGGGCUGC 20 10052
BCLllA-9727 + GACAAGCCAAUGGCCAGUGC 20 10053
BCLllA-9728 + GUGCGGGGAGGGGGAGGUGC 20 10054
BCLllA-9729 + CACACCAAUGGACACACAUC 20 10055
BCLllA-9730 - GAAAAAACCCUCAUCCCAUC 20 10056
BCLllA-9731 - ACUGAUGAAGAUAUUU UCUC 20 10057
BCLllA-9732 + GAACUUGAACGUCAGGAGUC 20 10058
BCLllA-9733 - CCUCCCCCGGGGGCCGCGUC 20 10059
BCLllA-4526 + AAAAAAAAAAAAAAAAAAAG 20 10060
BCLllA-9734 + GUGGCCGGGAGAGAAGAAAG 20 10061
BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 10062
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 10063
BCLllA-9735 + UGGGGCCGCGGGCUCACCAG 20 10064
BCLllA-9736 + AGAGAAGAAAGGGGUGGCAG 20 10065
BCLllA-9737 + CACCAAUGGACACACAUCAG 20 10066
BCLllA-9738 - CACUUGAACUUGCAGCUCAG 20 10067
BCLllA-4611 - CAAAAGCGAGGGGGAGAGAG 20 10068
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 10069
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 10070
BCLllA-9739 - GGACUAGAAGCAAAAGCGAG 20 10071
BCLllA-4411 + GAGGGGCGGGCCGAGGGGAG 20 10072
BCLllA-4575 + AGACGCGGCCCCCGGGGGAG 20 10073
BCLllA-9740 + GAGAGAGAGAAGAGAGAUAG 20 10074
BCLllA-9741 + CCUGCUCCCCCCCACACACG 20 10075
BCLllA-9742 + GGCUCCGCGGACGCCAGACG 20 10076
BCLllA-9743 - CUCGGCCCGCCCCUCCCCCG 20 10077
BCLllA-9744 - UCCCGGCCACGCCACCGCCG 20 10078
BCLllA-9745 + AGUGGCCGCAGCGAGCGCCG 20 10079
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 10080
BCLllA-9746 + GGGAGGGGGCGCUGGGGCCG 20 10081
BCLllA-9747 + GUGCGGGGCGGGGGGCUCCG 20 10082
BCLllA-9748 - CAGGACUAGAAGCAAAAGCG 20 10083
BCLllA-9749 + GGAGGGGGAGGUGCGGGGCG 20 10084 BCLllA-9750 + CGAGCGCCGCGGCGGUGGCG 20 10085
BCLllA-9751 + ACAAGCCAAUGGCCAGUGCG 20 10086
BCLllA-9752 + UGCGGGGAGGGGGAGGUGCG 20 10087
BCLllA-9753 - CG AG G U A A A AG AG A U A A AG G 20 10088
BCLllA-9754 - ACUUGAACUUGCAGCUCAGG 20 10089
BCLllA-9755 - GACUAGAAGCAAAAGCGAGG 20 10090
BCLllA-4408 + GAGCAGGAGAGAAGGGGAGG 20 10091
BCLllA-4594 + AGGGGCGGGCCGAGGGGAGG 20 10092
BCLllA-9756 + CAAUGGCCAGUGCGGGGAGG 20 10093
BCLllA-9757 - UCGGCCCGCCCCUCCCCCGG 20 10094
BCLllA-4471 + GGCCGCAGCGAGCGCCGCGG 20 10095
BCLllA-4661 + CGCAGCGAGCGCCGCGGCGG 20 10096
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 10097
BCLllA-4448 + GCGGGCGGCGGCGGCGGCGG 20 10098
BCLllA-4501 + GGGGCGGGCGGCGGCGGCGG 20 10099
BCLllA-5484 + UGCGGGGCGGGCGGCGGCGG 20 10100
BCLllA-5485 + GGCUGCGGGGCGGGCGGCGG 20 10101
BCLllA-5486 + GUGGGCUGCGGGGCGGGCGG 20 10102
BCLllA-9758 + GAGGGGGAGGUGCGGGGCGG 20 10103
BCLllA-9759 + GCAGGGGUGGGAGGAAAGGG 20 10104
BCLllA-9760 - CUUGAACUUGCAGCUCAGGG 20 10105
BCLllA-4443 + GCGGCGGCGGCGGCGGCGGG 20 10106
BCLllA-5487 + AUGGUGGGCUGCGGGGCGGG 20 10107
BCLllA-9761 + AGGGGGAGGUGCGGGGCGGG 20 10108
BCLllA-4434 + GCCGGGAGAGAAGAAAGGGG 20 10109
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 10110
BCLllA-9762 + GAAGAAAGGGGUGGCAGGGG 20 10111
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 10112
BCLllA-4666 + CGCGGCCCCCGGGGGAGGGG 20 10113
BCLllA-5489 + AGACAUGGUGGGCUGCGGGG 20 10114
BCLllA-9763 + AGCCAAUGGCCAGUGCGGGG 20 10115
BCLllA-9764 + GGGGAGGGGGAGGUGCGGGG 20 10116
BCLllA-9765 + UGGCCAGUGCGGGGAGGGGG 20 10117
BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 10118
BCLllA-9766 + GGUGGGAGGAAAGGGUGGGG 20 10119
BCLllA-9767 + GGGUGGGAGGAAAGGGUGGG 20 10120
BCLllA-9768 + AAAGGGGUGGCAGGGGUGGG 20 10121
BCLllA-9769 - U UAGAGUCCGCGUGUGUGGG 20 10122
BCLllA-5490 + U UGCUUGCGGCGAGACAUGG 20 10123
BCLllA-9770 + GGGGUGGGAGGAAAGGGUGG 20 10124
BCLllA-9771 + GCCGAGGGGAGGGGGCGCUG 20 10125
BCLllA-9772 - CACCGCCGCGGCGCUCGCUG 20 10126 BCLllA-5497 + UCCCGUUUGCUUAAGUGCUG 20 10127
BCLllA-9773 + GGACAAGCCAAUGGCCAGUG 20 10128
BCLllA-9774 + AGUGCGGGGAGGGGGAGGUG 20 10129
BCLllA-9775 + AGGGGUGGGAGGAAAGGGUG 20 10130
BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 10131
BCLllA-9777 + GGCGCAGGGAAGAUGAAUUG 20 10132
BCLllA-5500 + GCUGGGGUUUGCCUUGCUUG 20 10133
BCLllA-9778 + GACAGAGACACACAAAACAU 20 10134
BCLllA-9779 - CCCCUCCCCGCACUGGCCAU 20 10135
BCLllA-9780 + ACACGGCAAUGGUUCCAGAU 20 10136
BCLllA-9781 + AUAAUUAUUAUUACUAUUAU 20 10137
BCLllA-9782 - GCCCCAGCGCCCCCUCCCCU 20 10138
BCLllA-9783 + GGCCGAGGGGAGGGGGCGCU 20 10139
BCLllA-5509 + UUCCCGUUUGCUUAAGUGCU 20 10140
BCLllA-9784 + CAGGGGUGGGAGGAAAGGGU 20 10141
BCLllA-9785 + AAGAAAGGGGUGGCAGGGGU 20 10142
BCLllA-9786 + GCGCAGGGAAGAUGAAUUGU 20 10143
BCLllA-9787 + UAAUUAUUAUUACUAUUAUU 20 10144
BCLllA-9788 - GUAUUAUUUCUAAUUUAUUU 20 10145
Table 15C provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the third tier parameters. The targeting domains binds within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 15C
Figure imgf000386_0001
BCLllA-9794 - AAGUGGCACUGUGGAAA 17 10151
BCLllA-9795 + GGGCUGCGGGUCCGGAA 17 10152
BCLllA-9796 + G AAA U A A AG CG G CG G A A 17 10153
BCLllA-9797 - UGGGAGCUGGUGGGGAA 17 10154
BCLllA-9798 - AAAGUGGCACUGUGGAA 17 10155
BCLllA-9799 + GCCCGAGGGCGCCCCCA 17 10156
BCLllA-9800 + CGUCCUUCCCGGUCCCA 17 10157
BCLllA-9801 + CCCCCAAGGCCGAGCCA 17 10158
BCLllA-9802 + CCCGCGUGUGGACGCCA 17 10159
BCLllA-9597 - GUGUGUGGGGGGGAGCA 17 10160
BCLllA-9803 + AGGUGGGAGGGAGCGCA 17 10161
BCLllA-9804 - GGACACCAGCGCGCUCA 17 10162
BCLllA-9805 + CGCGCGGCCUGGAAAGA 17 10163
BCLllA-9806 - UCCGCGGAGUCGGGAGA 17 10164
BCLllA-9807 + CGCAGGCCGGGGCCCGA 17 10165
BCLllA-9808 - GAGAGGGGCCGCGGCGA 17 10166
BCLllA-9809 + AGCUCCGCAGCGGGCGA 17 10167
BCLllA-9810 - CGUGGGACCGGGAAGGA 17 10168
BCLllA-9811 - GGUGUGCGUACGGAGGA 17 10169
BCLllA-9812 + AGGGCUGCGGGUCCGGA 17 10170
BCLllA-9813 + GGGGAAGCGCGGGCGGA 17 10171
BCLllA-9814 - AAAUGGGGGGGUAGGGA 17 10172
BCLllA-9815 - GAGCCGUGGGACCGGGA 17 10173
BCLllA-9816 - CGCGGCGGCGGCGGGGA 17 10174
BCLllA-9817 + GGCGAGGGGAGGUGGGA 17 10175
BCLllA-9818 + UCCAGCCUAAGUUUGGA 17 10176
BCLllA-9819 - AAUAAUGAACAAUGCUA 17 10177
BCLllA-9820 - GGAAGUGGGUGUGCGUA 17 10178
BCLllA-9821 - AAGAAAAUGGGGGGGUA 17 10179
BCLllA-9822 + ACCCCCCCAUUUUCUUA 17 10180
BCLllA-9823 + U CAU U AU U U UG CAAAAC 17 10181
BCLllA-9824 + AUAGAGCGAGAGUGCAC 17 10182
BCLllA-9825 - GAGAAAAGAGGUGAGAC 17 10183
BCLllA-9826 - AGAGGGGCCGCGGCGAC 17 10184
BCLllA-9827 - GUGGGACCGGGAAGGAC 17 10185
BCLllA-9828 + AAGGCCGAGCCAGGGAC 17 10186
BCLllA-9829 + GCCUGGAAAGAGGGGAC 17 10187
BCLllA-9830 - GGGGAGAGCCGUGGGAC 17 10188
BCLllA-9831 - CAACUCACAUGCAAACC 17 10189
BCLllA-9832 + UAGAGCGAGAGUGCACC 17 10190
BCLllA-9833 + AGGCCGAGCCAGGGACC 17 10191
BCLllA-9834 + CCUGGAAAGAGGGGACC 17 10192 BCLllA-9835 - GGGAGAGCCGUGGGACC 17 10193
BCLllA-9836 - CCGGGAGCAACUCUACC 17 10194
BCLllA-9837 + CACCAGCUCCCACCCCC 17 10195
BCLllA-9838 + CGGGAGGCUGCAGCCCC 17 10196
BCLllA-9839 - GCUUUUACUUCGGCCCC 17 10197
BCLllA-9840 - CUGUGGAAAGGGGCCCC 17 10198
BCLllA-9841 + UCACCUCUUUUCUCCCC 17 10199
BCLllA-9842 - CCGCGCUUCCCCAGCCC 17 10200
BCLllA-9843 + CCGGGAGGCUGCAGCCC 17 10201
BCLllA-9844 - GGGGCGCCCUCGGGCCC 17 10202
BCLllA-9845 - CGCCGCCUGCCUCUCCC 17 10203
BCLllA-9846 + CUCACCUCU UUUCUCCC 17 10204
BCLllA-9847 - U CU AAAAAACG AU U CCC 17 10205
BCLllA-9848 + GCGGGCGGAGGGAAGCC 17 10206
BCLllA-9849 - CCCGCGCUUCCCCAGCC 17 10207
BCLllA-9850 + GCCCCCAAGGCCGAGCC 17 10208
BCLllA-9851 + CCCCGCGUGUGGACGCC 17 10209
BCLllA-9852 + GCGGACUCAGGAGCGCC 17 10210
BCLllA-9853 + GGCAGGCGGCGCAGGCC 17 10211
BCLllA-9854 + CAGGAGCCCGCGCGGCC 17 10212
BCLllA-9855 - CCGGGGCUGCAGCCUCC 17 10213
BCLllA-9856 - CAGGCCGCGCGGGCUCC 17 10214
BCLllA-9857 + CCAGGUAGAGUUGCUCC 17 10215
BCLllA-9858 + GCAGCGCCCAAGUCUCC 17 10216
BCLllA-9859 - UACGGAGGAGGGUGUCC 17 10217
BCLllA-9860 - GUCU AAAAAACG AUUCC 17 10218
BCLllA-9861 + GCGUCUCCCGUCCUUCC 17 10219
BCLllA-9862 - CCCGGUCCCCUCUU UCC 17 10220
BCLllA-9863 + AGUUACAGCUCCGCAGC 17 10221
BCLllA-9864 + CCGGCACAAAAGGCAGC 17 10222
BCLllA-9865 - ACGGUCAAGUGUGCAGC 17 10223
BCLllA-9866 + GGGCAAGCGCGAGGAGC 17 10224
BCLllA-9620 - CGUGUGUGGGGGGGAGC 17 10225
BCLllA-9867 - AACCUGGGGGUGGGAGC 17 10226
BCLllA-9868 - CCCUGGCGUCCACACGC 17 10227
BCLllA-9869 - UUCCCGAGCGCAGCCGC 17 10228
BCLllA-9870 + CCGGGCUGGGGAAGCGC 17 10229
BCLllA-9871 + CGCGGACUCAGGAGCGC 17 10230
BCLllA-9872 - CUCUUUCCAGGCCGCGC 17 10231
BCLllA-9873 + CUUGACCGUGAGCGCGC 17 10232
BCLllA-9874 + GGAGAGGCAGGCGGCGC 17 10233
BCLllA-9875 + AGGCAGGCGGCGCAGGC 17 10234 BCLllA-9876 + GGGGACCGGGGAGAGGC 17 10235
BCLllA-9877 - GCCCUCCAAACU UAGGC 17 10236
BCLllA-9878 - AGGACGGGAGACGCGGC 17 10237
BCLllA-9879 - GCGAGCGCGGCGGCGGC 17 10238
BCLllA-9880 + AGGCUGCAGCCCCGGGC 17 10239
BCLllA-9881 + UGCAAAACUGGCGGGGC 17 10240
BCLllA-9882 + UAUUUUGCAAAACUGGC 17 10241
BCLllA-9883 + AAACACCCACCUCUGGC 17 10242
BCLllA-9884 + UAAGUUUGGAGGGCUGC 17 10243
BCLllA-9885 + A C A A A AG GCGGCAGUGC 17 10244
BCLllA-9886 - CCCGCUGCCUUUUGUGC 17 10245
BCLllA-9887 + CCCGACUCCGCGGACUC 17 10246
BCLllA-9888 + GGACAAACACCCACCUC 17 10247
BCLllA-9889 - GCCUUGGGGGCGCCCUC 17 10248
BCLllA-9890 - UUUGCUGUCCUCUCCUC 17 10249
BCLllA-9891 + AGCCCGCGGCUGCGCUC 17 10250
BCLllA-9892 - AGCGCAGCCGCGGGCUC 17 10251
BCLllA-9893 - CCUGAGUCCGCGGAGUC 17 10252
BCLllA-9894 + UUGGAGGGCUGCGGGUC 17 10253
BCLllA-9895 - GUACGGAGGAGGGUGUC 17 10254
BCLllA-9896 - GCUCAGCUCUCAACUUC 17 10255
BCLllA-9897 - CUUGGGCGCUGCCCU UC 17 10256
BCLllA-9898 - ACUGCCGCCUU UUGUUC 17 10257
BCLllA-9899 - AUUCCCGGGGAGAAAAG 17 10258
BCLllA-9900 - CCACAAUAGUGAGAAAG 17 10259
BCLllA-9901 + GGCGGAAAGGAGGAAAG 17 10260
BCLllA-9902 + CCGCGCGGCCUGGAAAG 17 10261
BCLllA-9903 - AGUGGCACUGUGGAAAG 17 10262
BCLllA-9904 + CG A A A AG AG A A A U A A AG 17 10263
BCLllA-9905 - GCGGCGGGGAGGGGAAG 17 10264
BCLllA-9906 + CCGCGUGUGGACGCCAG 17 10265
BCLllA-9907 - CCUUU UGUUCCGGCCAG 17 10266
BCLllA-9908 + AAGUUACAGCUCCGCAG 17 10267
BCLllA-9909 + G CCGG CAC AAAAG G C AG 17 10268
BCLllA-9910 - C ACG G U CAAG U G U G C AG 17 10269
BCLllA-9911 + GCGCGGCCUGGAAAGAG 17 10270
BCLllA-9912 - CCGCGGAGUCGGGAGAG 17 10271
BCLllA-9913 + GCUCCGCAGCGGGCGAG 17 10272
BCLllA-9914 + AAACUUUGCCCGAGGAG 17 10273
BCLllA-9915 - GUCCGCGGAGUCGGGAG 17 10274
BCLllA-9916 + AAGAGGGGACCGGGGAG 17 10275
BCLllA-9917 - GCGGCGGCGGCGGGGAG 17 10276 BCLllA-9918 + GCGGGGCGGGGGGGGAG 17 10277
BCLllA-9919 + CAUUUUCUUACGGUGAG 17 10278
BCLllA-9920 + GGGAGCGCACGGCAACG 17 10279
BCLllA-9642 + GCUCCCCCCCACACACG 17 10280
BCLllA-9921 - CCCCUGGCGUCCACACG 17 10281
BCLllA-9922 - GGGAAGGACGGGAGACG 17 10282
BCLllA-9923 - GAGGGGCCGCGGCGACG 17 10283
BCLllA-9924 + CUGGAAAGAGGGGACCG 17 10284
BCLllA-9925 - CGCGCUUCCCCAGCCCG 17 10285
BCLllA-9926 + UAAAAGCCCCGAGCCCG 17 10286
BCLllA-9927 + GCGCAGGCCGGGGCCCG 17 10287
BCLllA-9928 + UCGGGAAACUUUGCCCG 17 10288
BCLllA-9929 - CUAAAAAACGAUUCCCG 17 10289
BCLllA-9930 - UUUCCCGAGCGCAGCCG 17 10290
BCLllA-9931 - GGCGACGGGGAGAGCCG 17 10291
BCLllA-9932 + CGGACUCAGGAGCGCCG 17 10292
BCLllA-9933 + GGCUCUCCCCGUCGCCG 17 10293
BCLllA-9934 + GCAGGCGGCGCAGGCCG 17 10294
BCLllA-9935 - AGUCGGGAGAGGGGCCG 17 10295
BCLllA-9936 + CCCCUCUCCCGACUCCG 17 10296
BCLllA-9937 - CGGCGCUCCUGAGUCCG 17 10297
BCLllA-9938 + CCCGGGCUGGGGAAGCG 17 10298
BCLllA-9939 - CACGCGGGGAGCGAGCG 17 10299
BCLllA-9940 - CCUGGCGUCCACACGCG 17 10300
BCLllA-9941 + GUCUCCAGGAGCCCGCG 17 10301
BCLllA-9942 - CCUCUU UCCAGGCCGCG 17 10302
BCLllA-9943 + GCGGGAGGGCAAGCGCG 17 10303
BCLllA-9944 - CGAGCGCGGCGGCGGCG 17 10304
BCLllA-9945 + CAGCUCCGCAGCGGGCG 17 10305
BCLllA-9946 + GCAAAACUGGCGGGGCG 17 10306
BCLllA-9947 + AUUUUGCAAAACUGGCG 17 10307
BCLllA-9948 - GCGCAGCCGCGGGCUCG 17 10308
BCLllA-9949 + C U G G CCG G A ACAAAAG G 17 10309
BCLllA-9950 + A U A A AG CG G CG G A A AG G 17 10310
BCLllA-9951 + GACCGGGGAGAGGCAGG 17 10311
BCLllA-9952 + GGAAAGGAGGAAAGAGG 17 10312
BCLllA-9953 - U UUGUUCCGGCCAGAGG 17 10313
BCLllA-9954 - GGGUGUGCGUACGGAGG 17 10314
BCLllA-9955 + CAGCGGGCGAGGGGAGG 17 10315
BCLllA-9956 - AGUGGGUGUGCGUACGG 17 10316
BCLllA-9957 + GGACUCAGGAGCGCCGG 17 10317
BCLllA-9958 + AAAGAGAAAUAAAGCGG 17 10318 BCLllA-9959 - GCGGGGAGCGAGCGCGG 17 10319
BCLllA-9960 - GGGAGCGAGCGCGGCGG 17 10320
BCLllA-9961 - AGCGAGCGCGGCGGCGG 17 10321
BCLllA-9962 + UGGGGAAGCGCGGGCGG 17 10322
BCLllA-9963 + CAAAACUGGCGGGGCGG 17 10323
BCLllA-9964 - AGCUGGUGGGGAAAGGG 17 10324
BCLllA-9965 - AAAAUGGGGGGGUAGGG 17 10325
BCLllA-9966 + AGCGAGAGUGCACCGGG 17 10326
BCLllA-9967 - GUCAAGUGUGCAGCGGG 17 10327
BCLllA-9968 + GGCUGGGGAAGCGCGGG 17 10328
BCLllA-9969 + AAAACUGGCGGGGCGGG 17 10329
BCLllA-9970 + CCGCAGCGGGCGAGGGG 17 10330
BCLllA-9971 - GCGCGGCGGCGGCGGGG 17 10331
BCLllA-9972 + AAACUGGCGGGGCGGGG 17 10332
BCLllA-9973 + UUGCAAAACUGGCGGGG 17 10333
BCLllA-9974 + AACUGGCGGGGCGGGGG 17 10334
BCLllA-9975 - ACAUGCAAACCUGGGGG 17 10335
BCLllA-9976 - ACCGUAAGAAAAUGGGG 17 10336
BCLllA-9548 - AGUCCGCGUGUGUGGGG 17 10337
BCLllA-9977 - C AC CG U A AG A A A A U G G G 17 10338
BCLllA-9978 + GGGCGAGGGGAGGUGGG 17 10339
BCLllA-9668 - GAGUCCGCGUGUGUGGG 17 10340
BCLllA-9979 - U C A CCG U A AG A A A A U G G 17 10341
BCLllA-9980 + UUAUUUUGCAAAACUGG 17 10342
BCLllA-9981 - CUCACAUGCAAACCUGG 17 10343
BCLllA-9982 - CUGGGGGUGGGAGCUGG 17 10344
BCLllA-9670 - AGAGUCCGCGUGUGUGG 17 10345
BCLllA-9983 - GCGGAGCUGUAACUUGG 17 10346
BCLllA-9984 - CCCUGGCUCGGCCUUGG 17 10347
BCLllA-9985 + AUCCAGCCUAAGU UUGG 17 10348
BCLllA-9986 - CUCACCGUAAGAAAAUG 17 10349
BCLllA-9987 - GUGAGAAAGUGGCACUG 17 10350
BCLllA-9988 - ACUCACAUGCAAACCUG 17 10351
BCLllA-9989 - CCUCCCCUCGCCCGCUG 17 10352
BCLllA-9990 + CUAAGUUUGGAGGGCUG 17 10353
BCLllA-9991 + GCUGCAGCCCCGGGCUG 17 10354
BCLllA-9992 + CGCUCGCUCCCCGCGUG 17 10355
BCLllA-9993 - GGGGGUGGGAGCUGGUG 17 10356
BCLllA-9678 - U UUAGAGUCCGCGUGUG 17 10357
BCLllA-9549 - UAGAGUCCGCGUGUGUG 17 10358
BCLllA-9994 + ACU UUCUCACUAUUGUG 17 10359
BCLllA-9995 + CCACUU UCUCACUAUUG 17 10360 BCLllA-9996 - UCCCUGGCUCGGCCUUG 17 10361
BCLllA-9997 - ACUCACCGUAAG A A A A U 17 10362
BCLllA-9998 - GCUGCGGAGCUGUAACU 17 10363
BCLllA-9999 - GCGGGCUCCUGGAGACU 17 10364
BCLllA-10000 - AAC U CAC AU G CAAACCU 17 10365
BCLllA-10001 - GGCCUUGGGGGCGCCCU 17 10366
BCLllA-10002 - GGUCCCUGGCUCGGCCU 17 10367
BCLllA-10003 - CUU UGCUGUCCUCUCCU 17 10368
BCLllA-10004 + GAGCCCGCGGCUGCGCU 17 10369
BCLllA-10005 + GGCUGCAGCCCCGGGCU 17 10370
BCLllA-10006 - GAGCGCAGCCGCGGGCU 17 10371
BCLllA-10007 - CGGCGGGGAGGGGAAGU 17 10372
BCLllA-10008 - UCCUGAGUCCGCGGAGU 17 10373
BCLllA-10009 + AUUUUCUUACGGUGAGU 17 10374
BCLllA-10010 - GCGACGGGGAGAGCCGU 17 10375
BCLllA-10011 - U UGUUCCGGCCAGAGGU 17 10376
BCLllA-10012 + AGCGGGCGAGGGGAGGU 17 10377
BCLllA-10013 - UAAGAAAAUGGGGGGGU 17 10378
BCLllA-10014 - CAUGCAAACCUGGGGGU 17 10379
BCLllA-10015 - UGGGGGUGGGAGCUGGU 17 10380
BCLllA-9687 - U UAGAGUCCGCGUGUGU 17 10381
BCLllA-10016 + CACUUUCUCACUAUUGU 17 10382
BCLllA-10017 - CGCAGCCCUCCAAACUU 17 10383
BCLllA-10018 - GGCUCAGCUCUCAACUU 17 10384
BCLllA-10019 - CGGGCUCCUGGAGACU U 17 10385
BCLllA-10020 - GCUCGGGGCUUUUACU U 17 10386
BCLllA-10021 - GUCCCUGGCUCGGCCUU 17 10387
BCLllA-10022 + GGAAUCCAGCCUAAGUU 17 10388
BCLllA-10023 - GAGGUGAGACUGGCU UU 17 10389
BCLllA-10024 - U CCCACU CACCG U AAG AAAA 20 10390
BCLllA-10025 + CCACCUCUGGCCGGAACAAA 20 10391
BCLllA-10026 + GCGCGAGGAGCCGGCACAAA 20 10392
BCLllA-10027 - CUU UAUUUCUCUUU UCGAAA 20 10393
BCLllA-10028 - GGUGGGAGCUGGUGGGGAAA 20 10394
BCLllA-10029 - AGAAAGUGGCACUGUGGAAA 20 10395
BCLllA-10030 + GGAGGGCUGCGGGUCCGGAA 20 10396
BCLllA-10031 + AGAGAAAUAAAGCGGCGGAA 20 10397
BCLllA-10032 - GGGUGGGAGCUGGUGGGGAA 20 10398
BCLllA-10033 - GAGAAAGUGGCACUGUGGAA 20 10399
BCLllA-10034 + GGGGCCCGAGGGCGCCCCCA 20 10400
BCLllA-10035 + UCCCGUCCUUCCCGGUCCCA 20 10401
BCLllA-10036 + GCGCCCCCAAGGCCGAGCCA 20 10402 BCLllA-10037 + CUCCCCGCGUGUGGACGCCA 20 10403
BCLllA-9701 - CGCGUGUGUGGGGGGGAGCA 20 10404
BCLllA-10038 + GGGAGGUGGGAGGGAGCGCA 20 10405
BCLllA-10039 - U UUGGACACCAGCGCGCUCA 20 10406
BCLllA-10040 + GCCCGCGCGGCCUGGAAAGA 20 10407
BCLllA-10041 - GAGUCCGCGGAGUCGGGAGA 20 10408
BCLllA-10042 + CGGCGCAGGCCGGGGCCCGA 20 10409
BCLllA-10043 - CGGGAGAGGGGCCGCGGCGA 20 10410
BCLllA-10044 + UACAGCUCCGCAGCGGGCGA 20 10411
BCLllA-10045 - AGCCGUGGGACCGGGAAGGA 20 10412
BCLllA-10046 - GUGGGUGUGCGUACGGAGGA 20 10413
BCLllA-10047 + UGGAGGGCUGCGGGUCCGGA 20 10414
BCLllA-10048 + GCUGGGGAAGCGCGGGCGGA 20 10415
BCLllA-10049 - AGAAAAUGGGGGGGUAGGGA 20 10416
BCLllA-10050 - GGAGAGCCGUGGGACCGGGA 20 10417
BCLllA-10051 - GAGCGCGGCGGCGGCGGGGA 20 10418
BCLllA-10052 + GCGGGCGAGGGGAGGUGGGA 20 10419
BCLllA-10053 + GAAUCCAGCCUAAGUUUGGA 20 10420
BCLllA-10054 - CAAAAUAAUGAACAAUGCUA 20 10421
BCLllA-10055 - AGGGGAAGUGGGUGUGCGUA 20 10422
BCLllA-10056 - CGUAAGAAAAUGGGGGGGUA 20 10423
BCLllA-10057 + CCUACCCCCCCAUUUUCUUA 20 10424
BCLllA-10058 + UGUUCAUUAUUUUGCAAAAC 20 10425
BCLllA-10059 + AAAAUAGAGCGAGAGUGCAC 20 10426
BCLllA-10060 - GGGGAGAAAAGAGGUGAGAC 20 10427
BCLllA-10061 - GGGAGAGGGGCCGCGGCGAC 20 10428
BCLllA-10062 - GCCGUGGGACCGGGAAGGAC 20 10429
BCLllA-10063 + CCCAAGGCCGAGCCAGGGAC 20 10430
BCLllA-10064 + GCGGCCUGGAAAGAGGGGAC 20 10431
BCLllA-10065 - GACGGGGAGAGCCGUGGGAC 20 10432
BCLllA-10066 - GAACAACUCACAUGCAAACC 20 10433
BCLllA-10067 + AAAUAGAGCGAGAGUGCACC 20 10434
BCLllA-10068 + CCAAGGCCGAGCCAGGGACC 20 10435
BCLllA-10069 + CGGCCUGGAAAGAGGGGACC 20 10436
BCLllA-10070 - ACGGGGAGAGCCGUGGGACC 20 10437
BCLllA-10071 - UGUCCGGGAGCAACUCUACC 20 10438
BCLllA-10072 + CCCCACCAGCUCCCACCCCC 20 10439
BCLllA-10073 + CACCGGGAGGCUGCAGCCCC 20 10440
BCLllA-10074 - GGGGCU UUUACUUCGGCCCC 20 10441
BCLllA-10075 - GCACUGUGGAAAGGGGCCCC 20 10442
BCLllA-10076 + GUCUCACCUCUU UUCUCCCC 20 10443
BCLllA-10077 - CGCCCGCGCU UCCCCAGCCC 20 10444 BCLllA-10078 + GCACCGGGAGGCUGCAGCCC 20 10445
BCLllA-10079 - U UGGGGGCGCCCUCGGGCCC 20 10446
BCLllA-10080 - CUGCGCCGCCUGCCUCUCCC 20 10447
BCLllA-10081 + AGUCUCACCUCUUU UCUCCC 20 10448
BCLllA-10082 - AAGUCUAAAAAACGAUUCCC 20 10449
BCLllA-10083 + AGCGCGGGCGGAGGGAAGCC 20 10450
BCLllA-10084 - CCGCCCGCGCUUCCCCAGCC 20 10451
BCLllA-10085 + GGCGCCCCCAAGGCCGAGCC 20 10452
BCLllA-10086 + GCUCCCCGCGUGUGGACGCC 20 10453
BCLllA-10087 + UCCGCGGACUCAGGAGCGCC 20 10454
BCLllA-10088 + AGAGGCAGGCGGCGCAGGCC 20 10455
BCLllA-10089 + CUCCAGGAGCCCGCGCGGCC 20 10456
BCLllA-10090 - AGCCCGGGGCUGCAGCCUCC 20 10457
BCLllA-10091 - U UCCAGGCCGCGCGGGCUCC 20 10458
BCLllA-10092 + AAGCCAGGUAGAGUUGCUCC 20 10459
BCLllA-10093 + AGGGCAGCGCCCAAGUCUCC 20 10460
BCLllA-10094 - GCGUACGGAGGAGGGUGUCC 20 10461
BCLllA-10095 - CAAGUCUAAAAAACGAUUCC 20 10462
BCLllA-10096 + GCCGCGUCUCCCGUCCU UCC 20 10463
BCLllA-10097 - CUCCCCGGUCCCCUCUUUCC 20 10464
BCLllA-10098 + CCAAG U UACAGCU CCG CAGC 20 10465
BCLllA-10099 + GAGCCGGCA C A A A AG G C AG C 20 10466
BCLllA-10100 - CUCACGGUCAAGUGUGCAGC 20 10467
BCLllA-10101 + GGAGGGCAAGCGCGAGGAGC 20 10468
BCLllA-9563 - CCGCGUGUGUGGGGGGGAGC 20 10469
BCLllA-10102 - GCAAACCUGGGGGUGGGAGC 20 10470
BCLllA-10103 - GGCCCCUGGCGUCCACACGC 20 10471
BCLllA-10104 - AGUUUCCCGAGCGCAGCCGC 20 10472
BCLllA-10105 + GCCCCGGGCUGGGGAAGCGC 20 10473
BCLllA-10106 + CUCCGCGGACUCAGGAGCGC 20 10474
BCLllA-10107 - CCCCUCUUUCCAGGCCGCGC 20 10475
BCLllA-10108 + ACACUUGACCGUGAGCGCGC 20 10476
BCLllA-10109 + CGGGGAGAGGCAGGCGGCGC 20 10477
BCLllA-10110 + GAGAGGCAGGCGGCGCAGGC 20 10478
BCLllA-10111 + AGAGGGGACCGGGGAGAGGC 20 10479
BCLllA-10112 - GCAGCCCUCCAAACUUAGGC 20 10480
BCLllA-10113 - GGAAGGACGGGAGACGCGGC 20 10481
BCLllA-10114 - GGAGCGAGCGCGGCGGCGGC 20 10482
BCLllA-10115 + GGGAGGCUGCAGCCCCGGGC 20 10483
BCLllA-10116 + U UUUGCAAAACUGGCGGGGC 20 10484
BCLllA-10117 + CAUUAUUUUGCAAAACUGGC 20 10485
BCLllA-10118 + GACAAACACCCACCUCUGGC 20 10486 BCLllA-10119 + GCCUAAGUUUGGAGGGCUGC 20 10487
BCLllA-10120 + GGAACAAAAGGCGGCAGUGC 20 10488
BCLllA-10121 - UGUCCCGCUGCCU UUUGUGC 20 10489
BCLllA-10122 + UCUCCCGACUCCGCGGACUC 20 10490
BCLllA-10123 + GCGGGACAAACACCCACCUC 20 10491
BCLllA-10124 - UCGGCCUUGGGGGCGCCCUC 20 10492
BCLllA-10125 - UUCUUUGCUGUCCUCUCCUC 20 10493
BCLllA-10126 + CCGAGCCCGCGGCUGCGCUC 20 10494
BCLllA-10127 - CCGAGCGCAGCCGCGGGCUC 20 10495
BCLllA-10128 - GCUCCUGAGUCCGCGGAGUC 20 10496
BCLllA-10129 + AGUUUGGAGGGCUGCGGGUC 20 10497
BCLllA-10130 - UGCGUACGGAGGAGGGUGUC 20 10498
BCLllA-10131 - GAGGCUCAGCUCUCAACUUC 20 10499
BCLllA-10132 - AGACUUGGGCGCUGCCCUUC 20 10500
BCLllA-10133 - GGCACUGCCGCCUU UUGUUC 20 10501
BCLllA-10134 - ACGAUUCCCGGGGAGAAAAG 20 10502
BCLllA-10135 - UCCCCACAAUAGUGAGAAAG 20 10503
BCLllA-10136 + AGCGGCGGAAAGGAGGAAAG 20 10504
BCLllA-10137 + AGCCCGCGCGGCCUGGAAAG 20 10505
BCLllA-10138 - GAAAGUGGCACUGUGGAAAG 20 10506
BCLllA-10139 + U U U CG A A A AG AG AAA U A A AG 20 10507
BCLllA-10140 - GCGGCGGCGGGGAGGGGAAG 20 10508
BCLllA-10141 + UCCCCGCGUGUGGACGCCAG 20 10509
BCLllA-10142 - CCGCCUUUUGUUCCGGCCAG 20 10510
BCLllA-10143 + UCCAAGUUACAGCUCCGCAG 20 10511
BCLllA-10144 + GGAGCCGGCA C A A A AG G C AG 20 10512
BCLllA-10145 - GCUCACGGUCAAGUGUGCAG 20 10513
BCLllA-10146 + CCCGCGCGGCCUGGAAAGAG 20 10514
BCLllA-10147 - AGUCCGCGGAGUCGGGAGAG 20 10515
BCLllA-10148 + ACAGCUCCGCAGCGGGCGAG 20 10516
BCLllA-10149 + GGGAAACUUUGCCCGAGGAG 20 10517
BCLllA-10150 - UGAGUCCGCGGAGUCGGGAG 20 10518
BCLllA-10151 + GGAAAGAGGGGACCGGGGAG 20 10519
BCLllA-10152 - AGCGCGGCGGCGGCGGGGAG 20 10520
BCLllA-10153 + CUGGCGGGGCGGGGGGGGAG 20 10521
BCLllA-10154 + CCCCAUU UUCUUACGGUGAG 20 10522
BCLllA-10155 + GGAGGGAGCGCACGGCAACG 20 10523
BCLllA-9741 + CCUGCUCCCCCCCACACACG 20 10524
BCLllA-10156 - CGGCCCCUGGCGUCCACACG 20 10525
BCLllA-10157 - ACCGGGAAGGACGGGAGACG 20 10526
BCLllA-10158 - GGAGAGGGGCCGCGGCGACG 20 10527
BCLllA-10159 + GGCCUGGAAAGAGGGGACCG 20 10528 BCLllA-10160 - GCCCGCGCUUCCCCAGCCCG 20 10529
BCLllA-10161 + AAGUAAAAGCCCCGAGCCCG 20 10530
BCLllA-10162 + GCGGCGCAGGCCGGGGCCCG 20 10531
BCLllA-10163 + CGCUCGGGAAACUUUGCCCG 20 10532
BCLllA-10164 - AGUCUAAAAAACGAUUCCCG 20 10533
BCLllA-10165 - AAGUUUCCCGAGCGCAGCCG 20 10534
BCLllA-10166 - CGCGGCGACGGGGAGAGCCG 20 10535
BCLllA-10167 + CCGCGGACUCAGGAGCGCCG 20 10536
BCLllA-10168 + CACGGCUCUCCCCGUCGCCG 20 10537
BCLllA-10169 + GAGGCAGGCGGCGCAGGCCG 20 10538
BCLllA-10170 - CGGAGUCGGGAGAGGGGCCG 20 10539
BCLllA-10171 + CGGCCCCUCUCCCGACUCCG 20 10540
BCLllA-10172 - CCCCGGCGCUCCUGAGUCCG 20 10541
BCLllA-10173 + AGCCCCGGGCUGGGGAAGCG 20 10542
BCLllA-10174 - CCACACGCGGGGAGCGAGCG 20 10543
BCLllA-10175 - GCCCCUGGCGUCCACACGCG 20 10544
BCLllA-10176 + CAAGUCUCCAGGAGCCCGCG 20 10545
BCLllA-10177 - UCCCCUCUUUCCAGGCCGCG 20 10546
BCLllA-10178 + GGCGCGGGAGGGCAAGCGCG 20 10547
BCLllA-10179 - GAGCGAGCGCGGCGGCGGCG 20 10548
BCLllA-10180 + UUACAGCUCCGCAGCGGGCG 20 10549
BCLllA-10181 + U UUGCAAAACUGGCGGGGCG 20 10550
BCLllA-10182 + AUUAUUUUGCAAAACUGGCG 20 10551
BCLllA-10183 - CGAGCGCAGCCGCGGGCUCG 20 10552
BCLllA-10184 + CCUCUGGCCGGAACAAAAGG 20 10553
BCLllA-10185 + G AAA U A A AG CG G CG G A A AG G 20 10554
BCLllA-10186 + GGGGACCGGGGAGAGGCAGG 20 10555
BCLllA-10187 + GGCGGAAAGGAGGAAAGAGG 20 10556
BCLllA-10188 - CCUU UUGUUCCGGCCAGAGG 20 10557
BCLllA-10189 - AGUGGGUGUGCGUACGGAGG 20 10558
BCLllA-10190 + CCGCAGCGGGCGAGGGGAGG 20 10559
BCLllA-10191 - GGAAGUGGGUGUGCGUACGG 20 10560
BCLllA-10192 + CGCGGACUCAGGAGCGCCGG 20 10561
BCLllA-10193 + CGAAAAGAGAAAUAAAGCGG 20 10562
BCLllA-10194 - CACGCGGGGAGCGAGCGCGG 20 10563
BCLllA-10195 - GCGGGGAGCGAGCGCGGCGG 20 10564
BCLllA-10196 - GGGAGCGAGCGCGGCGGCGG 20 10565
BCLllA-10197 + GGCUGGGGAAGCGCGGGCGG 20 10566
BCLllA-10198 + UUGCAAAACUGGCGGGGCGG 20 10567
BCLllA-10199 - GGGAGCUGGUGGGGAAAGGG 20 10568
BCLllA-10200 - AAGAAAAUGGGGGGGUAGGG 20 10569
BCLllA-10201 + UAGAGCGAGAGUGCACCGGG 20 10570 BCLllA-10202 - ACGGUCAAGUGUGCAGCGGG 20 10571
BCLllA-10203 + CCGGGCUGGGGAAGCGCGGG 20 10572
BCLllA-10204 + UGCAAAACUGGCGGGGCGGG 20 10573
BCLllA-10205 + GCUCCGCAGCGGGCGAGGGG 20 10574
BCLllA-10206 - CGAGCGCGGCGGCGGCGGGG 20 10575
BCLllA-10207 + GCAAAACUGGCGGGGCGGGG 20 10576
BCLllA-10208 + AUUUUGCAAAACUGGCGGGG 20 10577
BCLllA-10209 + CAAAACUGGCGGGGCGGGGG 20 10578
BCLllA-10210 - CUCACAUGCAAACCUGGGGG 20 10579
BCLllA-10211 - CUCACCGUAAGAAAAUGGGG 20 10580
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 10581
BCLllA-10212 - ACUCACCGUAAGAAAAUGGG 20 10582
BCLllA-10213 + AGCGGGCGAGGGGAGGUGGG 20 10583
BCLllA-9769 - U UAGAGUCCGCGUGUGUGGG 20 10584
BCLllA-10214 - CACUCACCGUAAGAAAAUGG 20 10585
BCLllA-10215 + UCAUUAUUUUGCAAAACUGG 20 10586
BCLllA-10216 - CAACUCACAUGCAAACCUGG 20 10587
BCLllA-10217 - AACCUGGGGGUGGGAGCUGG 20 10588
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 10589
BCLllA-10218 - GCUGCGGAGCUGUAACU UGG 20 10590
BCLllA-10219 - GGUCCCUGGCUCGGCCU UGG 20 10591
BCLllA-10220 + GGAAUCCAGCCUAAGU UUGG 20 10592
BCLllA-10221 - CCACUCACCGUAAGAAAAUG 20 10593
BCLllA-10222 - AUAGUGAGAAAGUGGCACUG 20 10594
BCLllA-10223 - ACAACUCACAUGCAAACCUG 20 10595
BCLllA-10224 - CCACCUCCCCUCGCCCGCUG 20 10596
BCLllA-10225 + AGCCUAAGUUUGGAGGGCUG 20 10597
BCLllA-10226 + GAGGCUGCAGCCCCGGGCUG 20 10598
BCLllA-10227 + CCGCGCUCGCUCCCCGCGUG 20 10599
BCLllA-10228 - CCUGGGGGUGGGAGCUGGUG 20 10600
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 10601
BCLllA-9776 - U UUUAGAGUCCGCGUGUGUG 20 10602
BCLllA-10229 + GCCACU UUCUCACUAUUGUG 20 10603
BCLllA-10230 + GUGCCACU UUCUCACUAUUG 20 10604
BCLllA-10231 - CGGUCCCUGGCUCGGCCUUG 20 10605
BCLllA-10232 - CCCACU CACCG UAAGAAAAU 20 10606
BCLllA-10233 - CCCGCUGCGGAGCUGUAACU 20 10607
BCLllA-10234 - CGCGCGGGCUCCUGGAGACU 20 10608
BCLllA-10235 - AACAACUCACAUGCAAACCU 20 10609
BCLllA-10236 - CUCGGCCUUGGGGGCGCCCU 20 10610
BCLllA-10237 - CCCGGUCCCUGGCUCGGCCU 20 10611
BCLllA-10238 - UUUCUUUGCUGUCCUCUCCU 20 10612 BCLllA-10239 + CCCGAGCCCGCGGCUGCGCU 20 10613
BCLllA-10240 + GGAGGCUGCAGCCCCGGGCU 20 10614
BCLllA-10241 - CCCGAGCGCAGCCGCGGGCU 20 10615
BCLllA-10242 - CGGCGGCGGGGAGGGGAAGU 20 10616
BCLllA-10243 - CGCUCCUGAGUCCGCGGAGU 20 10617
BCLllA-10244 + CCCAUU UUCUUACGGUGAGU 20 10618
BCLllA-10245 - GCGGCGACGGGGAGAGCCGU 20 10619
BCLllA-10246 - CUU UUGUUCCGGCCAGAGGU 20 10620
BCLllA-10247 + CGCAGCGGGCGAGGGGAGGU 20 10621
BCLllA-10248 - CCGUAAGAAAAUGGGGGGGU 20 10622
BCLllA-10249 - UCACAUGCAAACCUGGGGGU 20 10623
BCLllA-10250 - ACCUGGGGGUGGGAGCUGGU 20 10624
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 10625
BCLllA-10251 + UGCCACUU UCUCACUAUUGU 20 10626
BCLllA-10252 - ACCCGCAGCCCUCCAAACU U 20 10627
BCLllA-10253 - GGAGGCUCAGCUCUCAACUU 20 10628
BCLllA-10254 - GCGCGGGCUCCUGGAGACUU 20 10629
BCLllA-10255 - CGGGCUCGGGGCU UUUACUU 20 10630
BCLllA-10256 - CCGGUCCCUGGCUCGGCCUU 20 10631
BCLllA-10257 + CGCGGAAUCCAGCCUAAGUU 20 10632
BCLllA-10258 - AAAGAGGUGAGACUGGCUUU 20 10633
Table 16A provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of
orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1 A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 16A
Figure imgf000398_0001
BCLllA-10261 + GUGGCGUGGCCGGGAGAGAAGAA 23 10636
BCLllA-10262 + GGUGGCGUGGCCGGGAGAGAAGAA 24 10637
BCLllA-10263 + CACGGCAAUGGUUCCAGA 18 10638
BCLllA-10264 + ACACGGCAAUGGUUCCAGA 19 10639
BCLllA-9557 + UACACGGCAAUGGUUCCAGA 20 10640
BCLllA-10265 + AUACACGGCAAUGGUUCCAGA 21 10641
BCLllA-10266 + CAUACACGGCAAUGGUUCCAGA 22 10642
BCLllA-10267 + GCAUACACGGCAAUGGUUCCAGA 23 10643
BCLllA-10268 + UGCAUACACGGCAAUGGUUCCAGA 24 10644
BCLllA-6258 + UUAUUGGGUUACU UACGC 18 10645
BCLllA-6259 + AUUAUUGGGUUACUUACGC 19 10646
BCLllA-6260 + UAUUAUUGGGUUACUUACGC 20 10647
BCLllA-6261 + CUAUUAUUGGGUUACU UACGC 21 10648
BCLllA-6262 + ACUAUUAUUGGGUUACUUACGC 22 10649
BCLllA-6263 + UACUAUUAUUGGGU UACUUACGC 23 10650
BCLllA-6264 + U UACUAUUAUUGGGUUACUUACGC 24 10651
BCLllA-10269 + GGGAGAGAAGAAAGGGGUGGC 21 10652
BCLllA-10270 + CGGGAGAGAAGAAAGGGGUGGC 22 10653
BCLllA-10271 + CCGGGAGAGAAGAAAGGGGUGGC 23 10654
BCLllA-10272 + GCCGGGAGAGAAGAAAGGGGUGGC 24 10655
BCLllA-6265 + UCCCGUU UGCUUAAGUGC 18 10656
BCLllA-6266 + UUCCCGU UUGCUUAAGUGC 19 10657
BCLllA-5352 + AUUCCCGUUUGCU UAAGUGC 20 10658
BCLllA-6267 + AAUUCCCGUU UGCUUAAGUGC 21 10659
BCLllA-6268 + GAAUUCCCGU UUGCUUAAGUGC 22 10660
BCLllA-6269 + AGAAUUCCCGUU UGCUUAAGUGC 23 10661
BCLllA-6270 + GAGAAUUCCCGU UUGCUUAAGUGC 24 10662
BCLllA-10273 + CCUGCGAACUUGAACGUC 18 10663
BCLllA-10274 + CCCUGCGAACUUGAACGUC 19 10664
BCLllA-9570 + UCCCUGCGAACUUGAACGUC 20 10665
BCLllA-10275 + GUCCCUGCGAACUUGAACGUC 21 10666
BCLllA-10276 + CGUCCCUGCGAACU UGAACGUC 22 10667
BCLllA-10277 + ACGUCCCUGCGAACUUGAACGUC 23 10668
BCLllA-10278 + GACGUCCCUGCGAACUUGAACGUC 24 10669
BCLllA-10279 + UACAAAGAUGGCGCAGGGAAG 21 10670
BCLllA-10280 + A U AC A A AG AUGGCGCAGGGAAG 22 10671
BCLllA-10281 + AAUACAAAGAUGGCGCAGGGAAG 23 10672
BCLllA-10282 + UAAUACAAAGAUGGCGCAGGGAAG 24 10673
BCLllA-10283 + CGGU UCACAUCGGGAGAG 18 10674
BCLllA-10284 + UCGGUUCACAUCGGGAGAG 19 10675
BCLllA-10285 + CUCGGUUCACAUCGGGAGAG 20 10676
BCLllA-10286 + GCUCGGUUCACAUCGGGAGAG 21 10677 BCLllA-10287 + GGCUCGGU UCACAUCGGGAGAG 22 10678
BCLllA-10288 + CGGCUCGGUUCACAUCGGGAGAG 23 10679
BCLllA-10289 + ACGGCUCGGUUCACAUCGGGAGAG 24 10680
BCLllA-10290 + AAUGGUUCCAGAUGGGAU 18 10681
BCLllA-10291 + CAAUGGUUCCAGAUGGGAU 19 10682
BCLllA-10292 + GCAAUGGUUCCAGAUGGGAU 20 10683
BCLllA-10293 + GGCAAUGGUUCCAGAUGGGAU 21 10684
BCLllA-10294 + CGGCAAUGGUUCCAGAUGGGAU 22 10685
BCLllA-10295 + ACGGCAAUGGUUCCAGAUGGGAU 23 10686
BCLllA-10296 + CACGGCAAUGGUUCCAGAUGGGAU 24 10687
BCLllA-10297 + AACUUGAACGUCAGGAGU 18 10688
BCLllA-10298 + GAACUUGAACGUCAGGAGU 19 10689
BCLllA-10299 + CGAACUUGAACGUCAGGAGU 20 10690
BCLllA-10300 + GCGAACUUGAACGUCAGGAGU 21 10691
BCLllA-10301 + UGCGAACUUGAACGUCAGGAGU 22 10692
BCLllA-10302 + CUGCGAACUUGAACGUCAGGAGU 23 10693
BCLllA-10303 + CCUGCGAACUUGAACGUCAGGAGU 24 10694
BCLllA-6304 - AACCCCAGCACU UAAGCAAAC 21 10695
BCLllA-6305 - AAACCCCAGCACUUAAGCAAAC 22 10696
BCLllA-6306 - CAAACCCCAGCACUUAAGCAAAC 23 10697
BCLllA-6307 - GCAAACCCCAGCACUUAAGCAAAC 24 10698
BCLllA-10304 - AAGCAAAAGCGAGGGGGAGAG 21 10699
BCLllA-10305 - GAAGCAAAAGCGAGGGGGAGAG 22 10700
BCLllA-10306 - AGAAGCAAAAGCGAGGGGGAGAG 23 10701
BCLllA-10307 - UAGAAGCAAAAGCGAGGGGGAGAG 24 10702
Table 16B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1A gene.
Table 16B
Figure imgf000400_0001
Strand Length NO
BCLllA-10308 + GUGGCCGGGAGAGAAGAA 18 10703
BCLllA-10309 + CGUGGCCGGGAGAGAAGAA 19 10704
BCLllA-9697 + GCGUGGCCGGGAGAGAAGAA 20 10705
BCLllA-10310 + GUGGCAGGGGUGGGAGGA 18 10706
BCLllA-10311 + GGUGGCAGGGGUGGGAGGA 19 10707
BCLllA-10312 + GGGUGGCAGGGGUGGGAGGA 20 10708
BCLllA-10313 + GGGGUGGCAGGGGUGGGAGGA 21 10709
BCLllA-10314 + AGGGGUGGCAGGGGUGGGAGGA 22 10710
BCLllA-10315 + AAGGGGUGGCAGGGGUGGGAGGA 23 10711
BCLllA-10316 + AAAGGGGUGGCAGGGGUGGGAGGA 24 10712
BCLllA-10317 + UAAUUAUUAUUACUAUUA 18 10713
BCLllA-10318 + AUAAUUAUUAUUACUAUUA 19 10714
BCLllA-10319 + AAUAAUUAUUAUUACUAUUA 20 10715
BCLllA-10320 + UAAUAAUUAUUAUUACUAUUA 21 10716
BCLllA-10321 + UUAAUAAUUAUUAUUACUAUUA 22 10717
BCLllA-10322 + AUUAAUAAUUAUUAUUACUAUUA 23 10718
BCLllA-10323 + UAUUAAUAAUUAUUAUUACUAUUA 24 10719
BCLllA-10324 + AGAGAAGAAAGGGGUGGC 18 10720
BCLllA-10325 + GAGAGAAGAAAGGGGUGGC 19 10721
BCLllA-9726 + GGAGAGAAGAAAGGGGUGGC 20 10722
BCLllA-10326 + AAAGAUGGCGCAGGGAAG 18 10723
BCLllA-10327 + CAAAGAUGGCGCAGGGAAG 19 10724
BCLllA-10328 + ACAAAGAUGGCGCAGGGAAG 20 10725
BCLllA-6350 - CCCAGCACUUAAGCAAAC 18 10726
BCLllA-6351 - CCCCAGCACUUAAGCAAAC 19 10727
BCLllA-5458 - ACCCCAGCACUUAAGCAAAC 20 10728
BCLllA-10329 - UUCACGAGAAAAACCUCC 18 10729
BCLllA-10330 - U U U CACG AG AAAAACCU CC 19 10730
BCLllA-10331 - UUUUCACGAGAAAAACCUCC 20 10731
BCLllA-10332 - UUUUUCACGAGAAAAACCUCC 21 10732
BCLllA-10333 - AUUUUUCACGAGAAAAACCUCC 22 10733
BCLllA-10334 - AAU U U U U CACG AG AAAAACCU CC 23 10734
BCLllA-10335 - AAAU U U U U CACG AG AAAAACCU CC 24 10735
BCLllA-10336 - UGAUGAAGAUAUUUUCUC 18 10736
BCLllA-10337 - CUGAUGAAGAUAUUUUCUC 19 10737
BCLllA-9731 - ACUGAUGAAGAUAUUUUCUC 20 10738
BCLllA-10338 - CACUGAUGAAGAUAUUUUCUC 21 10739
BCLllA-10339 - GCACUGAUGAAGAUAUUUUCUC 22 10740
BCLllA-10340 - GGCACUGAUGAAGAUAUUUUCUC 23 10741
BCLllA-10341 - AGGCACUGAUGAAGAUAUUUUCUC 24 10742 BCLllA-10342 - CAAAAGCGAGGGGGAGAG 18 10743
BCLllA-10343 - GCAAAAGCGAGGGGGAGAG 19 10744
BCLllA-4583 - AGCAAAAGCGAGGGGGAGAG 20 10745
BCLllA-10344 - UAUUAUUUCUAAUUUAUU 18 10746
BCLllA-10345 - GUAUUAUUUCUAAUU UAUU 19 10747
BCLllA-10346 - UGUAUUAUUUCUAAU UUAUU 20 10748
BCLllA-10347 - U UGUAUUAUUUCUAAU UUAUU 21 10749
BCLllA-10348 - U UUGUAUUAUUUCUAAUUUAUU 22 10750
BCLllA-10349 - CUUUGUAUUAUUUCUAAUUUAUU 23 10751
BCLllA-10350 - UCUUUGUAUUAUUUCUAAUUUAUU 24 10752
BCLllA-10351 - UUGAAUAAUCUUUCAUUU 18 10753
BCLllA-10352 - UUUGAAUAAUCUUUCAUUU 19 10754
BCLllA-10353 - U UUUGAAUAAUCUUUCAUUU 20 10755
BCLllA-10354 - U UUUUGAAUAAUCUUUCAUUU 21 10756
BCLllA-10355 - U UUUUUGAAUAAUCUU UCAUUU 22 10757
BCLllA-10356 - CUU UUUUGAAUAAUCU UUCAUUU 23 10758
BCLllA-10357 - UCU UUUUUGAAUAAUCUUUCAUUU 24 10759
Table 16C provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the third tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used. Table 16C
Figure imgf000402_0001
BCLllA-10365 + UCAGGGGCUGGACAUGAAA 19 10768
BCLllA-10366 + AUCAGGGGCUGGACAUGAAA 20 10769
BCLllA-10367 + CAUCAGGGGCUGGACAUGAAA 21 10770
BCLllA-10368 + ACAUCAGGGGCUGGACAUGAAA 22 10771
BCLllA-10369 + CA CAUCAGGGGCUGGACAUGAAA 23 10772
BCLllA-10370 + ACACAUCAGGGGCUGGACAUGAAA 24 10773
BCLllA-10371 + ACACACGCGGACUCUAAA 18 10774
BCLllA-10372 + CACACACGCGGACUCUAAA 19 10775
BCLllA-10373 + CCACACACGCGGACUCUAAA 20 10776
BCLllA-10374 + CCCACACACGCGGACUCUAAA 21 10777
BCLllA-10375 + CCCCACACACGCGGACUCUAAA 22 10778
BCLllA-10376 + CCCCCACACACGCGGACUCUAAA 23 10779
BCLllA-10377 + CCCCCCACACACGCGGACUCUAAA 24 10780
BCLllA-10378 + AGAGGGAGAGAGAGAGAA 18 10781
BCLllA-10379 + AAGAGGGAGAGAGAGAGAA 19 10782
BCLllA-4921 + AAAGAGGGAGAGAGAGAGAA 20 10783
BCLllA-10380 + AAAAGAGGGAGAGAGAGAGAA 21 10784
BCLllA-10381 + AAAAAGAGGGAGAGAGAGAGAA 22 10785
BCLllA-10382 + AAAAAAGAGGGAGAGAGAGAGAA 23 10786
BCLllA-10383 + AAAAAAAGAGGGAGAGAGAGAGAA 24 10787
BCLllA-10384 + AGGGCGAGCAGGAGAGAA 18 10788
BCLllA-10385 + CAGGGCGAGCAGGAGAGAA 19 10789
BCLllA-4422 + GCAGGGCGAGCAGGAGAGAA 20 10790
BCLllA-10386 + GGCAGGGCGAGCAGGAGAGAA 21 10791
BCLllA-10387 + GGGCAGGGCGAGCAGGAGAGAA 22 10792
BCLllA-10388 + UGGGCAGGGCGAGCAGGAGAGAA 23 10793
BCLllA-10389 + AUGGGCAGGGCGAGCAGGAGAGAA 24 10794
BCLllA-10390 + GAGAAGGGGAGGAGGGAA 18 10795
BCLllA-10391 + AGAGAAGGGGAGGAGGGAA 19 10796
BCLllA-4404 + GAGAGAAGGGGAGGAGGGAA 20 10797
BCLllA-10392 + GGAGAGAAGGGGAGGAGGGAA 21 10798
BCLllA-10393 + AGGAGAGAAGGGGAGGAGGGAA 22 10799
BCLllA-10394 + CAGGAGAGAAGGGGAGGAGGGAA 23 10800
BCLllA-10395 + GCAGGAGAGAAGGGGAGGAGGGAA 24 10801
BCLllA-10396 + ACGACGGCUCGGUUCACA 18 10802
BCLllA-10397 + GACGACGGCUCGGUUCACA 19 10803
BCLllA-10398 + GGACGACGGCUCGGUUCACA 20 10804
BCLllA-10399 + CGGACGACGGCUCGGUUCACA 21 10805
BCLllA-10400 + GCGGACGACGGCUCGGUUCACA 22 10806
BCLllA-10401 + GGCGGACGACGGCUCGGUUCACA 23 10807
BCLllA-10402 + GGGCGGACGACGGCUCGGUUCACA 24 10808
BCLllA-10403 + AAGGGGAAGCUCACACCA 18 10809 BCLllA-10404 + GAAGGGGAAGCUCACACCA 19 10810
BCLllA-10405 + GGAAGGGGAAGCUCACACCA 20 10811
BCLllA-10406 + GGGAAGGGGAAGCUCACACCA 21 10812
BCLllA-10407 + AGGGAAGGGGAAGCUCACACCA 22 10813
BCLllA-10408 + GAGGGAAGGGGAAGCUCACACCA 23 10814
BCLllA-10409 + GGAGGGAAGGGGAAGCUCACACCA 24 10815
BCLllA-10410 + AGAAAGAAGGAGACUCCA 18 10816
BCLllA-10411 + UAGAAAGAAGGAGACUCCA 19 10817
BCLllA-10412 + U UAGAAAGAAGGAGACUCCA 20 10818
BCLllA-10413 + G U U AG AAAG AAGG AG ACU CCA 21 10819
BCLllA-10414 + GGUUAGAAAGAAGGAGACUCCA 22 10820
BCLllA-10415 + GGGUUAGAAAGAAGGAGACUCCA 23 10821
BCLllA-10416 + CGGGUUAGAAAGAAGGAGACUCCA 24 10822
BCLllA-10417 + GGCUCACCAGUGGCCGCA 18 10823
BCLllA-10418 + GGGCUCACCAGUGGCCGCA 19 10824
BCLllA-10419 + CGGGCUCACCAGUGGCCGCA 20 10825
BCLllA-10420 + GCGGGCUCACCAGUGGCCGCA 21 10826
BCLllA-10421 + CGCGGGCUCACCAGUGGCCGCA 22 10827
BCLllA-10422 + CCGCGGGCUCACCAGUGGCCGCA 23 10828
BCLllA-10423 + GCCGCGGGCUCACCAGUGGCCGCA 24 10829
BCLllA-10424 + UAAUACAAAGAUGGCGCA 18 10830
BCLllA-10425 + AUAAUACAAAGAUGGCGCA 19 10831
BCLllA-9702 + AAUAAUACAAAGAUGGCGCA 20 10832
BCLllA-10426 + A A A U A A U AC A A AG A U G G CG C A 21 10833
BCLllA-10427 + GAAAUAAUACAAAGAUGGCGCA 22 10834
BCLllA-10428 + AG AAA U A A U AC A A AG A U G G CG C A 23 10835
BCLllA-10429 + UAGAAAUAAUACAAAGAUGGCGCA 24 10836
BCLllA-10430 + AAAAAAAAAAAAAAAAGA 18 10837
BCLllA-10431 + AAAAAAAAAAAAAAAAAGA 19 10838
BCLllA-4527 + A A A A A A A A A A A A A A A AAAG A 20 10839
BCLllA-10432 + AAAAAAAAAAAAAAAAAAAGA 21 10840
BCLllA-10433 + A A A A A A A A A A A A A A A A AAA AG A 22 10841
BCLllA-10434 + A A A A A A A A A A A A A A A A AAA A AG A 23 10842
BCLllA-10435 + AAAAAAAAAAAAAAAAAAAAAAGA 24 10843
BCLllA-10436 + AGAGCCGGGUUAGAAAGA 18 10844
BCLllA-10437 + GAGAGCCGGGUUAGAAAGA 19 10845
BCLllA-9708 + GGAGAGCCGGGUUAGAAAGA 20 10846
BCLllA-10438 + GGGAGAGCCGGGUUAGAAAGA 21 10847
BCLllA-10439 + CGGGAGAGCCGGGUUAGAAAGA 22 10848
BCLllA-10440 + U CGGG AG AG CCGGGU U AG AAAG A 23 10849
BCLllA-10441 + AUCGGGAGAGCCGGGU UAGAAAGA 24 10850
BCLllA-10442 + CGUGGCCGGGAGAGAAGA 18 10851 BCLllA-10443 + GCGUGGCCGGGAGAGAAGA 19 10852
BCLllA-10444 + GGCGUGGCCGGGAGAGAAGA 20 10853
BCLllA-10445 + UGGCGUGGCCGGGAGAGAAGA 21 10854
BCLllA-10446 + GUGGCGUGGCCGGGAGAGAAGA 22 10855
BCLllA-10447 + GGUGGCGUGGCCGGGAGAGAAGA 23 10856
BCLllA-10448 + CGGUGGCGUGGCCGGGAGAGAAGA 24 10857
BCLllA-10449 + AGAGAGAGAGAAGAGAGA 18 10858
BCLllA-10450 + GAGAGAGAGAGAAGAGAGA 19 10859
BCLllA-4845 + GGAGAGAGAGAGAAGAGAGA 20 10860
BCLllA-10451 + GGGAGAGAGAGAGAAGAGAGA 21 10861
BCLllA-10452 + AGGGAGAGAGAGAGAAGAGAGA 22 10862
BCLllA-10453 + GAGGGAGAGAGAGAGAAGAGAGA 23 10863
BCLllA-10454 + AGAGGGAGAGAGAGAGAAGAGAGA 24 10864
BCLllA-10455 + UAGAGGGAGAGAGAGAGA 18 10865
BCLllA-10456 + AUAGAGGGAGAGAGAGAGA 19 10866
BCLllA-10457 + GAUAGAGGGAGAGAGAGAGA 20 10867
BCLllA-10458 + AGAUAGAGGGAGAGAGAGAGA 21 10868
BCLllA-10459 + GAGAUAGAGGGAGAGAGAGAGA 22 10869
BCLllA-10460 + AGAGAUAGAGGGAGAGAGAGAGA 23 10870
BCLllA-10461 + GAGAGAUAGAGGGAGAGAGAGAGA 24 10871
BCLllA-10462 + GAUAGAGGGAGAGAGAGA 18 10872
BCLllA-10463 + AGAUAGAGGGAGAGAGAGA 19 10873
BCLllA-10464 + GAGAUAGAGGGAGAGAGAGA 20 10874
BCLllA-10465 + AGAGAUAGAGGGAGAGAGAGA 21 10875
BCLllA-10466 + GAGAGAUAGAGGGAGAGAGAGA 22 10876
BCLllA-10467 + AGAGAGAUAGAGGGAGAGAGAGA 23 10877
BCLllA-10468 + AAGAGAGAUAGAGGGAGAGAGAGA 24 10878
BCLllA-10469 + AAAAAAGAGGGAGAGAGA 18 10879
BCLllA-10470 + AAAAAAAGAGGGAGAGAGA 19 10880
BCLllA-4911 + AAAAAAAAGAGGGAGAGAGA 20 10881
BCLllA-10471 + A A A A A A A A AG AGGGAGAGAGA 21 10882
BCLllA-10472 + AAAAAAAAAAGAGGGAGAGAGA 22 10883
BCLllA-10473 + AAAAAAAAAAAGAGGGAGAGAGA 23 10884
BCLllA-10474 + A A A A A A AAA A AAG AGGGAGAGAGA 24 10885
BCLllA-10475 + GAGAUAGAGGGAGAGAGA 18 10886
BCLllA-10476 + AGAGAUAGAGGGAGAGAGA 19 10887
BCLllA-10477 + GAGAGAUAGAGGGAGAGAGA 20 10888
BCLllA-10478 + AGAGAGAUAGAGGGAGAGAGA 21 10889
BCLllA-10479 + AAGAGAGAUAGAGGGAGAGAGA 22 10890
BCLllA-10480 + GAAGAGAGAUAGAGGGAGAGAGA 23 10891
BCLllA-10481 + AGAAGAGAGAUAGAGGGAGAGAGA 24 10892
BCLllA-10482 + CAGGGCGAGCAGGAGAGA 18 10893 BCLllA-10483 + GCAGGGCGAGCAGGAGAGA 19 10894
BCLllA-4464 + GGCAGGGCGAGCAGGAGAGA 20 10895
BCLllA-10484 + GGGCAGGGCGAGCAGGAGAGA 21 10896
BCLllA-10485 + UGGGCAGGGCGAGCAGGAGAGA 22 10897
BCLllA-10486 + AUGGGCAGGGCGAGCAGGAGAGA 23 10898
BCLllA-10487 + CAUGGGCAGGGCGAGCAGGAGAGA 24 10899
BCLllA-10488 + AAAAAAAAGAGGGAGAGA 18 10900
BCLllA-10489 + A A A A A A A A AG AGGGAGAGA 19 10901
BCLllA-4909 + AAAAAAAAAAGAGGGAGAGA 20 10902
BCLllA-10490 + A A A A A A A A A A AG AG G G AG AG A 21 10903
BCLllA-10491 + A A A A A A AAA A AAG AGGGAGAGA 22 10904
BCLllA-10492 + A A A A A A A A A AAA AG AGGGAGAGA 23 10905
BCLllA-10493 + AAAAAAAAAAAAAAGAGGGAGAGA 24 10906
BCLllA-10494 + GAGAGAUAGAGGGAGAGA 18 10907
BCLllA-10495 + AGAGAGAUAGAGGGAGAGA 19 10908
BCLllA-10496 + AAGAGAGAUAGAGGGAGAGA 20 10909
BCLllA-10497 + GAAGAGAGAUAGAGGGAGAGA 21 10910
BCLllA-10498 + AGAAGAGAGAUAGAGGGAGAGA 22 10911
BCLllA-10499 + GAGAAGAGAGAUAGAGGGAGAGA 23 10912
BCLllA-10500 + AGAGAAGAGAGAUAGAGGGAGAGA 24 10913
BCLllA-10501 + AAAAAAAAAAGAGGGAGA 18 10914
BCLllA-10502 + AAAAAAAAAAAGAGGGAGA 19 10915
BCLllA-4907 + AAAAAAAAAAAAGAGGGAGA 20 10916
BCLllA-10503 + A A A A A A A A A AAA AG AG G G AG A 21 10917
BCLllA-10504 + AAAAAAAAAAAAAAGAGGGAGA 22 10918
BCLllA-10505 + A A A A A A A A A A AAA A AG AG G G AG A 23 10919
BCLllA-10506 + AAAAAAAAAAAAAAAAGAGGGAGA 24 10920
BCLllA-10507 + AAGAGAGAUAGAGGGAGA 18 10921
BCLllA-10508 + GAAGAGAGAUAGAGGGAGA 19 10922
BCLllA-10509 + AGAAGAGAGAUAGAGGGAGA 20 10923
BCLllA-10510 + GAGAAGAGAGAUAGAGGGAGA 21 10924
BCLllA-10511 + AGAGAAGAGAGAUAGAGGGAGA 22 10925
BCLllA-10512 + GAGAGAAGAGAGAUAGAGGGAGA 23 10926
BCLllA-10513 + AGAGAGAAGAGAGAUAGAGGGAGA 24 10927
BCLllA-10514 + AGAGAGAAGAGAGAUAGA 18 10928
BCLllA-10515 + GAGAGAGAAGAGAGAUAGA 19 10929
BCLllA-9709 + AGAGAGAGAAGAGAGAUAGA 20 10930
BCLllA-10516 + GAGAGAGAGAAGAGAGAUAGA 21 10931
BCLllA-10517 + AGAGAGAGAGAAGAGAGAUAGA 22 10932
BCLllA-10518 + GAGAGAGAGAGAAGAGAGAUAGA 23 10933
BCLllA-10519 + GGAGAGAGAGAGAAGAGAGAUAGA 24 10934
BCLllA-10520 + CGGGAGAGCCGGGUUAGA 18 10935 BCLllA-10521 + UCGGGAGAGCCGGGUUAGA 19 10936
BCLllA-10522 + AUCGGGAGAGCCGGGUUAGA 20 10937
BCLllA-10523 + CAUCGGGAGAGCCGGGUUAGA 21 10938
BCLllA-10524 + ACAUCGGGAGAGCCGGGUUAGA 22 10939
BCLllA-10525 + CACAUCGGGAGAGCCGGGUUAGA 23 10940
BCLllA-10526 + UCACAUCGGGAGAGCCGGGUUAGA 24 10941
BCLllA-10527 + GGGGGAGGGGCGGGCCGA 18 10942
BCLllA-10528 + CGGGGGAGGGGCGGGCCGA 19 10943
BCLllA-4648 + CCGGGGGAGGGGCGGGCCGA 20 10944
BCLllA-10529 + CCCGGGGGAGGGGCGGGCCGA 21 10945
BCLllA-10530 + CCCCGGGGGAGGGGCGGGCCGA 22 10946
BCLllA-10531 + CCCCCGGGGGAGGGGCGGGCCGA 23 10947
BCLllA-10532 + GCCCCCGGGGGAGGGGCGGGCCGA 24 10948
BCLllA-10533 + UGGGCAGGGCGAGCAGGA 18 10949
BCLllA-10534 + AUGGGCAGGGCGAGCAGGA 19 10950
BCLllA-10535 + CAUGGGCAGGGCGAGCAGGA 20 10951
BCLllA-10536 + ACAUGGGCAGGGCGAGCAGGA 21 10952
BCLllA-10537 + AACAUGGGCAGGGCGAGCAGGA 22 10953
BCLllA-10538 + AAACAUGGGCAGGGCGAGCAGGA 23 10954
BCLllA-10539 + AAAACAUGGGCAGGGCGAGCAGGA 24 10955
BCLllA-10540 + CAGGAGAGAAGGGGAGGA 18 10956
BCLllA-10541 + GCAGGAGAGAAGGGGAGGA 19 10957
BCLllA-4584 + AGCAGGAGAGAAGGGGAGGA 20 10958
BCLllA-10542 + GAGCAGGAGAGAAGGGGAGGA 21 10959
BCLllA-10543 + CGAGCAGGAGAGAAGGGGAGGA 22 10960
BCLllA-10544 + GCGAGCAGGAGAGAAGGGGAGGA 23 10961
BCLllA-10545 + GGCGAGCAGGAGAGAAGGGGAGGA 24 10962
BCLllA-10546 + A A A A A A A A A A A AG AG G G A 18 10963
BCLllA-10547 + AAAAAAAAAAAAAGAGGGA 19 10964
BCLllA-4905 + A A A A A A A A A A AAA AG AG G G A 20 10965
BCLllA-10548 + AAAAAAAAAAAAAAAGAGGGA 21 10966
BCLllA-10549 + A A A A A A A A A A AAA A A AG AG G G A 22 10967
BCLllA-10550 + AAAAAAAAAAAAAAAAAGAGGGA 23 10968
BCLllA-10551 + A A A A A A A A A A AAA A A A A AG AG G G A 24 10969
BCLllA-10552 + AGAAGAGAGAUAGAGGGA 18 10970
BCLllA-10553 + GAGAAGAGAGAUAGAGGGA 19 10971
BCLllA-10554 + AGAGAAGAGAGAUAGAGGGA 20 10972
BCLllA-10555 + GAGAGAAGAGAGAUAGAGGGA 21 10973
BCLllA-10556 + AGAGAGAAGAGAGAUAGAGGGA 22 10974
BCLllA-10557 + GAGAGAGAAGAGAGAUAGAGGGA 23 10975
BCLllA-10558 + AGAGAGAGAAGAGAGAUAGAGGGA 24 10976
BCLllA-10559 + AGAGAAGGGGAGGAGGGA 18 10977 BCLllA-10560 + GAGAGAAGGGGAGGAGGGA 19 10978
BCLllA-4459 + GGAGAGAAGGGGAGGAGGGA 20 10979
BCLllA-10561 + AGGAGAGAAGGGGAGGAGGGA 21 10980
BCLllA-10562 + CAGGAGAGAAGGGGAGGAGGGA 22 10981
BCLllA-10563 + GCAGGAGAGAAGGGGAGGAGGGA 23 10982
BCLllA-10564 + AGCAGGAGAGAAGGGGAGGAGGGA 24 10983
BCLllA-10565 + GCGGUGGCGUGGCCGGGA 18 10984
BCLllA-10566 + GGCGGUGGCGUGGCCGGGA 19 10985
BCLllA-10567 + CGGCGGUGGCGUGGCCGGGA 20 10986
BCLllA-10568 + GCGGCGGUGGCGUGGCCGGGA 21 10987
BCLllA-10569 + CGCGGCGGUGGCGUGGCCGGGA 22 10988
BCLllA-10570 + CCGCGGCGGUGGCGUGGCCGGGA 23 10989
BCLllA-10571 + GCCGCGGCGGUGGCGUGGCCGGGA 24 10990
BCLllA-10572 + AGGGGCGGGCCGAGGGGA 18 10991
BCLllA-10573 + GAGGGGCGGGCCGAGGGGA 19 10992
BCLllA-4461 + GGAGGGGCGGGCCGAGGGGA 20 10993
BCLllA-10574 + GGGAGGGGCGGGCCGAGGGGA 21 10994
BCLllA-10575 + GGGGAGGGGCGGGCCGAGGGGA 22 10995
BCLllA-10576 + GGGGGAGGGGCGGGCCGAGGGGA 23 10996
BCLllA-10577 + CGGGGGAGGGGCGGGCCGAGGGGA 24 10997
BCLllA-10578 + CAAUGGCCAGUGCGGGGA 18 10998
BCLllA-10579 + CCAAUGGCCAGUGCGGGGA 19 10999
BCLllA-9558 + GCCAAUGGCCAGUGCGGGGA 20 11000
BCLllA-10580 + AGCCAAUGGCCAGUGCGGGGA 21 11001
BCLllA-10581 + AAGCCAAUGGCCAGUGCGGGGA 22 11002
BCLllA-10582 + CAAGCCAAUGGCCAGUGCGGGGA 23 11003
BCLllA-10583 + ACAAGCCAAUGGCCAGUGCGGGGA 24 11004
BCLllA-10584 + GUCAGGAGUCUGGAUGGA 18 11005
BCLllA-10585 + CGUCAGGAGUCUGGAUGGA 19 11006
BCLllA-10586 + ACGUCAGGAGUCUGGAUGGA 20 11007
BCLllA-10587 + AACGUCAGGAGUCUGGAUGGA 21 11008
BCLllA-10588 + GAACGUCAGGAGUCUGGAUGGA 22 11009
BCLllA-10589 + UGAACGUCAGGAGUCUGGAUGGA 23 11010
BCLllA-10590 + UUGAACGUCAGGAGUCUGGAUGGA 24 11011
BCLllA-10591 + AGAGAGAGAAGAGAGAUA 18 11012
BCLllA-10592 + GAGAGAGAGAAGAGAGAUA 19 11013
BCLllA-10593 + AGAGAGAGAGAAGAGAGAUA 20 11014
BCLllA-10594 + GAGAGAGAGAGAAGAGAGAUA 21 11015
BCLllA-10595 + GGAGAGAGAGAGAAGAGAGAUA 22 11016
BCLllA-10596 + GGGAGAGAGAGAGAAGAGAGAUA 23 11017
BCLllA-10597 + AGGGAGAGAGAGAGAAGAGAGAUA 24 11018
BCLllA-10598 + GACAGAGACACACAAAAC 18 11019 BCLllA-10599 + GGACAGAGACACACAAAAC 19 11020
BCLllA-10600 + UGGACAGAGACACACAAAAC 20 11021
BCLllA-10601 + AUGGACAGAGACACACAAAAC 21 11022
BCLllA-10602 + GAUGGACAGAGACACACAAAAC 22 11023
BCLllA-10603 + GGAUGGACAGAGACACACAAAAC 23 11024
BCLllA-10604 + UGGAUGGACAGAGACACACAAAAC 24 11025
BCLllA-10605 + CGUGACGUCCCUGCGAAC 18 11026
BCLllA-10606 + ACGUGACGUCCCUGCGAAC 19 11027
BCLllA-10607 + GACGUGACGUCCCUGCGAAC 20 11028
BCLllA-10608 + GGACGUGACGUCCCUGCGAAC 21 11029
BCLllA-10609 + CGGACGUGACGUCCCUGCGAAC 22 11030
BCLllA-10610 + GCGGACGUGACGUCCCUGCGAAC 23 11031
BCLllA-10611 + UGCGGACGUGACGUCCCUGCGAAC 24 11032
BCLllA-10612 + CUGCUCCCCCCCACACAC 18 11033
BCLllA-10613 + CCUGCUCCCCCCCACACAC 19 11034
BCLllA-10614 + CCCUGCUCCCCCCCACACAC 20 11035
BCLllA-10615 + GCCCUGCUCCCCCCCACACAC 21 11036
BCLllA-10616 + CGCCCUGCUCCCCCCCACACAC 22 11037
BCLllA-10617 + GCGCCCUGCUCCCCCCCACACAC 23 11038
BCLllA-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 11039
BCLllA-10619 + UGGACAUGAAAAAGAGAC 18 11040
BCLllA-10620 + CUGGACAUGAAAAAGAGAC 19 11041
BCLllA-10621 + GCUGGACAUGAAAAAGAGAC 20 11042
BCLllA-10622 + GGCUGGACAUGAAAAAGAGAC 21 11043
BCLllA-10623 + GGGCUGGACAUGAAAAAGAGAC 22 11044
BCLllA-10624 + GGGGCUGGACAUGAAAAAGAGAC 23 11045
BCLllA-10625 + AGGGGCUGGACAUGAAAAAGAGAC 24 11046
BCLllA-10626 + ACACAUCAGGGGCUGGAC 18 11047
BCLllA-10627 + CACACAUCAGGGGCUGGAC 19 11048
BCLllA-10628 + ACACACAUCAGGGGCUGGAC 20 11049
BCLllA-10629 + GACACACAUCAGGGGCUGGAC 21 11050
BCLllA-10630 + GGACACACAUCAGGGGCUGGAC 22 11051
BCLllA-10631 + UGGACACACAUCAGGGGCUGGAC 23 11052
BCLllA-10632 + AUGGACACACAUCAGGGGCUGGAC 24 11053
BCLllA-6411 + UAUUAUUGGGUUACUUAC 18 11054
BCLllA-6412 + CUAUUAUUGGGUUACUUAC 19 11055
BCLllA-6413 + ACUAUUAUUGGGUUACUUAC 20 11056
BCLllA-6414 + UACUAUUAUUGGGU UACUUAC 21 11057
BCLllA-6415 + U UACUAUUAUUGGGUUACUUAC 22 11058
BCLllA-6416 + AUUACUAUUAUUGGGUUACUUAC 23 11059
BCLllA-6417 + UAUUACUAUUAUUGGGUUACUUAC 24 11060
BCLllA-10633 + A A A A U G G C A A A AG C CC C C 18 11061 BCLllA-10634 + A A A A A U G G C A A A AG C CC C C 19 11062
BCLllA-10635 + AAAAAAUGGCAAAAGCCCCC 20 11063
BCLllA-10636 + AAAAAAAUGGCAAAAGCCCCC 21 11064
BCLllA-10637 + GAAAAAAAUGGCAAAAGCCCCC 22 11065
BCLllA-10638 + UGAAAAAAAUGGCAAAAGCCCCC 23 11066
BCLllA-10639 + AUGAAAAAAAUGGCAAAAGCCCCC 24 11067
BCLllA-10640 + ACGCCAGACGCGGCCCCC 18 11068
BCLllA-10641 + GACGCCAGACGCGGCCCCC 19 11069
BCLllA-4456 + GGACGCCAGACGCGGCCCCC 20 11070
BCLllA-10642 + CGGACGCCAGACGCGGCCCCC 21 11071
BCLllA-10643 + GCGGACGCCAGACGCGGCCCCC 22 11072
BCLllA-10644 + CGCGGACGCCAGACGCGGCCCCC 23 11073
BCLllA-10645 + CCGCGGACGCCAGACGCGGCCCCC 24 11074
BCLllA-10646 + GACGCCAGACGCGGCCCC 18 11075
BCLllA-10647 + GGACGCCAGACGCGGCCCC 19 11076
BCLllA-4362 + CGGACGCCAGACGCGGCCCC 20 11077
BCLllA-10648 + GCGGACGCCAGACGCGGCCCC 21 11078
BCLllA-10649 + CGCGGACGCCAGACGCGGCCCC 22 11079
BCLllA-10650 + CCGCGGACGCCAGACGCGGCCCC 23 11080
BCLllA-10651 + UCCGCGGACGCCAGACGCGGCCCC 24 11081
BCLllA-10652 + GGACGCCAGACGCGGCCC 18 11082
BCLllA-10653 + CGGACGCCAGACGCGGCCC 19 11083
BCLllA-4825 + GCGGACGCCAGACGCGGCCC 20 11084
BCLllA-10654 + CG CGGACG CCAGACG CGGCCC 21 11085
BCLllA-10655 + CCGCGGACGCCAGACGCGGCCC 22 11086
BCLllA-10656 + UCCGCGGACGCCAGACGCGGCCC 23 11087
BCLllA-10657 + CUCCGCGGACGCCAGACGCGGCCC 24 11088
BCLllA-10658 + CCGGGGGAGGGGCGGGCC 18 11089
BCLllA-10659 + CCCGGGGGAGGGGCGGGCC 19 11090
BCLllA-5064 + CCCCGGGGGAGGGGCGGGCC 20 11091
BCLllA-10660 + CCCCCGGGGGAGGGGCGGGCC 21 11092
BCLllA-10661 + GCCCCCGGGGGAGGGGCGGGCC 22 11093
BCLllA-10662 + GGCCCCCGGGGGAGGGGCGGGCC 23 11094
BCLllA-10663 + CGGCCCCCGGGGGAGGGGCGGGCC 24 11095
BCLllA-10664 + GGAGGGGGCGCUGGGGCC 18 11096
BCLllA-10665 + GGGAGGGGGCGCUGGGGCC 19 11097
BCLllA-10666 + GGGGAGGGGGCGCUGGGGCC 20 11098
BCLllA-10667 + AGGGGAGGGGGCGCUGGGGCC 21 11099
BCLllA-10668 + GAGGGGAGGGGGCGCUGGGGCC 22 11100
BCLllA-10669 + CGAGGGGAGGGGGCGCUGGGGCC 23 11101
BCLllA-10670 + CCGAGGGGAGGGGGCGCUGGGGCC 24 11102
BCLllA-10671 + CGCGGCGGUGGCGUGGCC 18 11103 BCLllA-10672 + CCGCGGCGGUGGCGUGGCC 19 11104
BCLllA-9718 + GCCGCGGCGGUGGCGUGGCC 20 11105
BCLllA-10673 + CGCCGCGGCGGUGGCGUGGCC 21 11106
BCLllA-10674 + GCGCCGCGGCGGUGGCGUGGCC 22 11107
BCLllA-10675 + AGCGCCGCGGCGGUGGCGUGGCC 23 11108
BCLllA-10676 + GAGCGCCGCGGCGGUGGCGUGGCC 24 11109
BCLllA-10677 + UGCGGGGCGGGGGGCUCC 18 11110
BCLllA-10678 + GUGCGGGGCGGGGGGCUCC 19 11111
BCLllA-10679 + GGUGCGGGGCGGGGGGCUCC 20 11112
BCLllA-10680 + AGGUGCGGGGCGGGGGGCUCC 21 11113
BCLllA-10681 + GAGGUGCGGGGCGGGGGGCUCC 22 11114
BCLllA-10682 + GGAGGUGCGGGGCGGGGGGCUCC 23 11115
BCLllA-10683 + GGGAGGUGCGGGGCGGGGGGCUCC 24 11116
BCLllA-10684 + AACAUGGGCAGGGCGAGC 18 11117
BCLllA-10685 + AAACAUGGGCAGGGCGAGC 19 11118
BCLllA-9721 + AAAACAUGGGCAGGGCGAGC 20 11119
BCLllA-10686 + CAAAACAUGGGCAGGGCGAGC 21 11120
BCLllA-10687 + ACAAAACAUGGGCAGGGCGAGC 22 11121
BCLllA-10688 + CA CAAAACAUGGGCAGGGCGAGC 23 11122
BCLllA-10689 + ACACAAAACAUGGGCAGGGCGAGC 24 11123
BCLllA-10690 + GCCGAGGGGAGGGGGCGC 18 11124
BCLllA-10691 + GGCCGAGGGGAGGGGGCGC 19 11125
BCLllA-4490 + GGGCCGAGGGGAGGGGGCGC 20 11126
BCLllA-10692 + CGGGCCGAGGGGAGGGGGCGC 21 11127
BCLllA-10693 + GCGGGCCGAGGGGAGGGGGCGC 22 11128
BCLllA-10694 + GGCGGGCCGAGGGGAGGGGGCGC 23 11129
BCLllA-10695 + GGGCGGGCCGAGGGGAGGGGGCGC 24 11130
BCLllA-10696 + AUAAUACAAAGAUGGCGC 18 11131
BCLllA-10697 + AAUAAUACAAAGAUGGCGC 19 11132
BCLllA-9565 + AAAUAAUACAAAGAUGGCGC 20 11133
BCLllA-10698 + GAAAUAAUACAAAGAUGGCGC 21 11134
BCLllA-10699 + AGAAAUAAUACAAAGAUGGCGC 22 11135
BCLllA-10700 + UAGAAAUAAUACAAAGAUGGCGC 23 11136
BCLllA-10701 + U UAGAAAUAAUACAAAGAUGGCGC 24 11137
BCLllA-10702 + GAGGGGGAGGUGCGGGGC 18 11138
BCLllA-10703 + GGAGGGGGAGGUGCGGGGC 19 11139
BCLllA-9724 + GGGAGGGGGAGGUGCGGGGC 20 11140
BCLllA-10704 + GGGGAGGGGGAGGUGCGGGGC 21 11141
BCLllA-10705 + CGGGGAGGGGGAGGUGCGGGGC 22 11142
BCLllA-10706 + GCGGGGAGGGGGAGGUGCGGGGC 23 11143
BCLllA-10707 + UGCGGGGAGGGGGAGGUGCGGGGC 24 11144
BCLllA-10708 + CCGCGGCGGUGGCGUGGC 18 11145 BCLllA-10709 + GCCGCGGCGGUGGCGUGGC 19 11146
BCLllA-9725 + CGCCGCGGCGGUGGCGUGGC 20 11147
BCLllA-10710 + GCGCCGCGGCGGUGGCGUGGC 21 11148
BCLllA-10711 + AGCGCCGCGGCGGUGGCGUGGC 22 11149
BCLllA-10712 + GAGCGCCGCGGCGGUGGCGUGGC 23 11150
BCLllA-10713 + CGAGCGCCGCGGCGGUGGCGUGGC 24 11151
BCLllA-10714 + CAAGCCAAUGGCCAGUGC 18 11152
BCLllA-10715 + ACAAGCCAAUGGCCAGUGC 19 11153
BCLllA-9727 + GACAAGCCAAUGGCCAGUGC 20 11154
BCLllA-10716 + GGACAAGCCAAUGGCCAGUGC 21 11155
BCLllA-10717 + AGGACAAGCCAAUGGCCAGUGC 22 11156
BCLllA-10718 + CAGGACAAGCCAAUGGCCAGUGC 23 11157
BCLllA-10719 + C C AG G A C A AG CCAAUGGCCAGUGC 24 11158
BCLllA-10720 + CACCAAUGGACACACAUC 18 11159
BCLllA-10721 + ACACCAAUGGACACACAUC 19 11160
BCLllA-9729 + CACACCAAUGGACACACAUC 20 11161
BCLllA-10722 + UCACACCAAUGGACACACAUC 21 11162
BCLllA-10723 + CUCA CACCAAUGGACACACAUC 22 11163
BCLllA-10724 + GCUCACACCAAUGGACACACAUC 23 11164
BCLllA-10725 + AGCUCACACCAAUGGACACACAUC 24 11165
BCLllA-10726 + GACGGCUCGGUUCACAUC 18 11166
BCLllA-10727 + CGACGGCUCGGUUCACAUC 19 11167
BCLllA-9568 + ACGACGGCUCGGUUCACAUC 20 11168
BCLllA-10728 + GACGACGGCUCGGUUCACAUC 21 11169
BCLllA-10729 + GGACGACGGCUCGGUUCACAUC 22 11170
BCLllA-10730 + CGGACGACGGCUCGGUUCACAUC 23 11171
BCLllA-10731 + GCGGACGACGGCUCGGU UCACAUC 24 11172
BCLllA-10732 + U UAGAAAGAAGGAGACUC 18 11173
BCLllA-10733 + G U U AG AAAG AAGG AG ACU C 19 11174
BCLllA-10734 + GGUUAGAAAGAAGGAGACUC 20 11175
BCLllA-10735 + GGGUUAGAAAGAAGGAGACUC 21 11176
BCLllA-10736 + CGGGUUAGAAAGAAGGAGACUC 22 11177
BCLllA-10737 + CCGGGUUAGAAAGAAGGAGACUC 23 11178
BCLllA-10738 + GCCGGGU UAGAAAGAAGGAGACUC 24 11179
BCLllA-10739 + UCUCUUUUACCUCGACUC 18 11180
BCLllA-10740 + AUCUCUUU UACCUCGACUC 19 11181
BCLllA-10741 + UAUCUCUU UUACCUCGACUC 20 11182
BCLllA-10742 + UUAUCUCU UUUACCUCGACUC 21 11183
BCLllA-10743 + UUUAUCUCUUUUACCUCGACUC 22 11184
BCLllA-10744 + CUUUAUCUCUUUUACCUCGACUC 23 11185
BCLllA-10745 + CCUU UAUCUCUUU UACCUCGACUC 24 11186
BCLllA-10746 + CUCUCGGAGGUUUUUCUC 18 11187 BCLllA-10747 + ACUCUCGGAGGUUUUUCUC 19 11188
BCLllA-10748 + GACUCUCGGAGGUUUUUCUC 20 11189
BCLllA-10749 + CGACUCUCGGAGGUUU UUCUC 21 11190
BCLllA-10750 + UCGACUCUCGGAGGUU UUUCUC 22 11191
BCLllA-10751 + CUCGACUCUCGGAGGU UUUUCUC 23 11192
BCLllA-10752 + CCUCGACUCUCGGAGGUUUUUCUC 24 11193
BCLllA-10753 + AAAAAAAAAAAAAAAAAG 18 11194
BCLllA-10754 + AAAAAAAAAAAAAAAAAAG 19 11195
BCLllA-4526 + AAAAAAAAAAAAAAAAAAAG 20 11196
BCLllA-10755 + AAAAAAAAAAAAAAAAAAAAG 21 11197
BCLllA-10756 + AAAAAAAAAAAAAAAAAAAAAG 22 11198
BCLllA-10757 + AAAAAAAAAAAAAAAAAAAAAAG 23 11199
BCLllA-10758 + AAAAAAAAAAAAAAAAAAAAAAAG 24 11200
BCLllA-10759 + GAGAGCCGGGUUAGAAAG 18 11201
BCLllA-10760 + GGAGAGCCGGGUUAGAAAG 19 11202
BCLllA-10761 + GGGAGAGCCGGGUUAGAAAG 20 11203
BCLllA-10762 + CGGGAGAGCCGGGUUAGAAAG 21 11204
BCLllA-10763 + UCGGGAGAGCCGGGUUAGAAAG 22 11205
BCLllA-10764 + AUCGGGAGAGCCGGGUUAGAAAG 23 11206
BCLllA-10765 + CAUCGGGAGAGCCGGGU UAGAAAG 24 11207
BCLllA-10766 + GGGCGAGCAGGAGAGAAG 18 11208
BCLllA-10767 + AGGGCGAGCAGGAGAGAAG 19 11209
BCLllA-4629 + CAGGGCGAGCAGGAGAGAAG 20 11210
BCLllA-10768 + GCAGGGCGAGCAGGAGAGAAG 21 11211
BCLllA-10769 + GGCAGGGCGAGCAGGAGAGAAG 22 11212
BCLllA-10770 + GGGCAGGGCGAGCAGGAGAGAAG 23 11213
BCLllA-10771 + UGGGCAGGGCGAGCAGGAGAGAAG 24 11214
BCLllA-10772 + AGAAGGGGAGGAGGGAAG 18 11215
BCLllA-10773 + GAGAAGGGGAGGAGGGAAG 19 11216
BCLllA-4577 + AGAGAAGGGGAGGAGGGAAG 20 11217
BCLllA-10774 + GAGAGAAGGGGAGGAGGGAAG 21 11218
BCLllA-10775 + GGAGAGAAGGGGAGGAGGGAAG 22 11219
BCLllA-10776 + AGGAGAGAAGGGGAGGAGGGAAG 23 11220
BCLllA-10777 + CAGGAGAGAAGGGGAGGAGGGAAG 24 11221
BCLllA-10778 + ACACGGCAAUGGUUCCAG 18 11222
BCLllA-10779 + UACACGGCAAUGGUUCCAG 19 11223
BCLllA-10780 + AUACACGGCAAUGGUUCCAG 20 11224
BCLllA-10781 + CAUACACGGCAAUGGU UCCAG 21 11225
BCLllA-10782 + GCAUACACGGCAAUGGU UCCAG 22 11226
BCLllA-10783 + UGCAUACACGGCAAUGGUUCCAG 23 11227
BCLllA-10784 + GUGCAUACACGGCAAUGGUUCCAG 24 11228
BCLllA-10785 + CAUGGGCAGGGCGAGCAG 18 11229 BCLllA-10786 + ACAUGGGCAGGGCGAGCAG 19 11230
BCLllA-10787 + AACAUGGGCAGGGCGAGCAG 20 11231
BCLllA-10788 + AAACAUGGGCAGGGCGAGCAG 21 11232
BCLllA-10789 + AAAACAUGGGCAGGGCGAGCAG 22 11233
BCLllA-10790 + CAAAACAUGGGCAGGGCGAGCAG 23 11234
BCLllA-10791 + ACAAAACAUGGGCAGGGCGAGCAG 24 11235
BCLllA-10792 + GGAGAGAGAGAGAGAGAG 18 11236
BCLllA-10793 + GGGAGAGAGAGAGAGAGAG 19 11237
BCLllA-4999 + AGGGAGAGAGAGAGAGAGAG 20 11238
BCLllA-10794 + GAGGGAGAGAGAGAGAGAGAG 21 11239
BCLllA-10795 + AGAGGGAGAGAGAGAGAGAGAG 22 11240
BCLllA-10796 + UAGAGGGAGAGAGAGAGAGAGAG 23 11241
BCLllA-10797 + AUAGAGGGAGAGAGAGAGAGAGAG 24 11242
BCLllA-10798 + AAAGAGGGAGAGAGAGAG 18 11243
BCLllA-10799 + AAAAGAGGGAGAGAGAGAG 19 11244
BCLllA-4916 + AAAAAGAGGGAGAGAGAGAG 20 11245
BCLllA-10800 + AAAAAAGAGGGAGAGAGAGAG 21 11246
BCLllA-10801 + AAAAAAAGAGGGAGAGAGAGAG 22 11247
BCLllA-10802 + AAAAAAAAGAGGGAGAGAGAGAG 23 11248
BCLllA-10803 + AAAAAAAAAGAGGGAGAGAGAGAG 24 11249
BCLllA-10804 + GCAGGGCGAGCAGGAGAG 18 11250
BCLllA-10805 + GGCAGGGCGAGCAGGAGAG 19 11251
BCLllA-4870 + GGGCAGGGCGAGCAGGAGAG 20 11252
BCLllA-10806 + UGGGCAGGGCGAGCAGGAGAG 21 11253
BCLllA-10807 + AUGGGCAGGGCGAGCAGGAGAG 22 11254
BCLllA-10808 + CAUGGGCAGGGCGAGCAGGAGAG 23 11255
BCLllA-10809 + ACAUGGGCAGGGCGAGCAGGAGAG 24 11256
BCLllA-10810 + GUGGCGUGGCCGGGAGAG 18 11257
BCLllA-10811 + GGUGGCGUGGCCGGGAGAG 19 11258
BCLllA-10812 + CGGUGGCGUGGCCGGGAGAG 20 11259
BCLllA-10813 + GCGGUGGCGUGGCCGGGAGAG 21 11260
BCLllA-10814 + GGCGGUGGCGUGGCCGGGAGAG 22 11261
BCLllA-10815 + CGGCGGUGGCGUGGCCGGGAGAG 23 11262
BCLllA-10816 + GCGGCGGUGGCGUGGCCGGGAGAG 24 11263
BCLllA-10817 + GGGGAGGGGCGGGCCGAG 18 11264
BCLllA-10818 + GGGGGAGGGGCGGGCCGAG 19 11265
BCLllA-4677 + CGGGGGAGGGGCGGGCCGAG 20 11266
BCLllA-10819 + CCGGGGGAGGGGCGGGCCGAG 21 11267
BCLllA-10820 + CCCGGGGGAGGGGCGGGCCGAG 22 11268
BCLllA-10821 + CCCCGGGGGAGGGGCGGGCCGAG 23 11269
BCLllA-10822 + CCCCCGGGGGAGGGGCGGGCCGAG 24 11270
BCLllA-10823 + AAACAUGGGCAGGGCGAG 18 11271 BCLllA-10824 + A A A AC A UGGGCAGGGCGAG 19 11272
BCLllA-10825 + CAAAACAUGGGCAGGGCGAG 20 11273
BCLllA-10826 + ACAAAACAUGGGCAGGGCGAG 21 11274
BCLllA-10827 + C ACA AAACAU G GG CAG G G CG AG 22 11275
BCLllA-10828 + ACACAAAACAUGGGCAGGGCGAG 23 11276
BCLllA-10829 + CACA CAAAACAUGGGCAGGGCGAG 24 11277
BCLllA-10830 + AGCAGGAGAGAAGGGGAG 18 11278
BCLllA-10831 + GAGCAGGAGAGAAGGGGAG 19 11279
BCLllA-5082 + CGAGCAGGAGAGAAGGGGAG 20 11280
BCLllA-10832 + GCGAGCAGGAGAGAAGGGGAG 21 11281
BCLllA-10833 + GGCGAGCAGGAGAGAAGGGGAG 22 11282
BCLllA-10834 + GGGCGAGCAGGAGAGAAGGGGAG 23 11283
BCLllA-10835 + AGGGCGAGCAGGAGAGAAGGGGAG 24 11284
BCLllA-10836 + AAUGGCCAGUGCGGGGAG 18 11285
BCLllA-10837 + CAAUGGCCAGUGCGGGGAG 19 11286
BCLllA-9572 + CCAAUGGCCAGUGCGGGGAG 20 11287
BCLllA-10838 + GCCAAUGGCCAGUGCGGGGAG 21 11288
BCLllA-10839 + AGCCAAUGGCCAGUGCGGGGAG 22 11289
BCLllA-10840 + AAGCCAAUGGCCAGUGCGGGGAG 23 11290
BCLllA-10841 + CAAGCCAAUGGCCAGUGCGGGGAG 24 11291
BCLllA-10842 + GAGAGAGAAGAGAGAUAG 18 11292
BCLllA-10843 + AGAGAGAGAAGAGAGAUAG 19 11293
BCLllA-9740 + GAGAGAGAGAAGAGAGAUAG 20 11294
BCLllA-10844 + AGAGAGAGAGAAGAGAGAUAG 21 11295
BCLllA-10845 + GAGAGAGAGAGAAGAGAGAUAG 22 11296
BCLllA-10846 + GGAGAGAGAGAGAAGAGAGAUAG 23 11297
BCLllA-10847 + GGGAGAGAGAGAGAAGAGAGAUAG 24 11298
BCLllA-10848 + CGCCAGACGCGGCCCCCG 18 11299
BCLllA-10849 + ACGCCAGACGCGGCCCCCG 19 11300
BCLllA-4351 + GACGCCAGACGCGGCCCCCG 20 11301
BCLllA-10850 + GGACGCCAGACGCGGCCCCCG 21 11302
BCLllA-10851 + CGGACGCCAGACGCGGCCCCCG 22 11303
BCLllA-10852 + GCGGACGCCAGACGCGGCCCCCG 23 11304
BCLllA-10853 + CGCGGACGCCAGACGCGGCCCCCG 24 11305
BCLllA-10854 + CGGGGGAGGGGCGGGCCG 18 11306
BCLllA-10855 + CCGGGGGAGGGGCGGGCCG 19 11307
BCLllA-4642 + CCCGGGGGAGGGGCGGGCCG 20 11308
BCLllA-10856 + CCCCGGGGGAGGGGCGGGCCG 21 11309
BCLllA-10857 + CCCCCGGGGGAGGGGCGGGCCG 22 11310
BCLllA-10858 + GCCCCCGGGGGAGGGGCGGGCCG 23 11311
BCLllA-10859 + GGCCCCCGGGGGAGGGGCGGGCCG 24 11312
BCLllA-10860 + GCGGCGGCGGCGGCGGCG 18 11313 BCLllA-10861 + GGCGGCGGCGGCGGCGGCG 19 11314
BCLllA-5097 + CGGCGGCGGCGGCGGCGGCG 20 11315
BCLllA-10862 + GCGGCGGCGGCGGCGGCGGCG 21 11316
BCLllA-10863 + GGCGGCGGCGGCGGCGGCGGCG 22 11317
BCLllA-10864 + CGGCGGCGGCGGCGGCGGCGGCG 23 11318
BCLllA-10865 + GCGGCGGCGGCGGCGGCGGCGGCG 24 11319
BCLllA-10866 + AGGGGGAGGUGCGGGGCG 18 11320
BCLllA-10867 + GAGGGGGAGGUGCGGGGCG 19 11321
BCLllA-9749 + GGAGGGGGAGGUGCGGGGCG 20 11322
BCLllA-10868 + GGGAGGGGGAGGUGCGGGGCG 21 11323
BCLllA-10869 + GGGGAGGGGGAGGUGCGGGGCG 22 11324
BCLllA-10870 + CGGGGAGGGGGAGGUGCGGGGCG 23 11325
BCLllA-10871 + GCGGGGAGGGGGAGGUGCGGGGCG 24 11326
BCLllA-10872 + GGCCGAGGGGAGGGGGCG 18 11327
BCLllA-10873 + GGGCCGAGGGGAGGGGGCG 19 11328
BCLllA-5099 + CGGGCCGAGGGGAGGGGGCG 20 11329
BCLllA-10874 + GCGGGCCGAGGGGAGGGGGCG 21 11330
BCLllA-10875 + GGCGGGCCGAGGGGAGGGGGCG 22 11331
BCLllA-10876 + GGGCGGGCCGAGGGGAGGGGGCG 23 11332
BCLllA-10877 + GGGGCGGGCCGAGGGGAGGGGGCG 24 11333
BCLllA-10878 + AAUAAUACAAAGAUGGCG 18 11334
BCLllA-10879 + A A A U A A U AC A A AG A U G G CG 19 11335
BCLllA-10880 + GAAAUAAUACAAAGAUGGCG 20 11336
BCLllA-10881 + AG AAA U A A U AC A A AG A U G G CG 21 11337
BCLllA-10882 + UAGAAAUAAUACAAAGAUGGCG 22 11338
BCLllA-10883 + UUAGAAAUAAUACAAAGAUGGCG 23 11339
BCLllA-10884 + AUUAGAAAUAAUACAAAGAUGGCG 24 11340
BCLllA-10885 + AAGCCAAUGGCCAGUGCG 18 11341
BCLllA-10886 + CAAGCCAAUGGCCAGUGCG 19 11342
BCLllA-9751 + ACAAGCCAAUGGCCAGUGCG 20 11343
BCLllA-10887 + GACAAGCCAAUGGCCAGUGCG 21 11344
BCLllA-10888 + GGACAAGCCAAUGGCCAGUGCG 22 11345
BCLllA-10889 + AGGACAAGCCAAUGGCCAGUGCG 23 11346
BCLllA-10890 + CAGGACAAGCCAAUGGCCAGUGCG 24 11347
BCLllA-6490 + GGGUUUGCCUUGCUUGCG 18 11348
BCLllA-6491 + GGGGUUUGCCUUGCUUGCG 19 11349
BCLllA-6492 + UGGGGUUUGCCUUGCUUGCG 20 11350
BCLllA-6493 + CUGGGGUUUGCCUUGCUUGCG 21 11351
BCLllA-6494 + GCUGGGGUUUGCCU UGCUUGCG 22 11352
BCLllA-6495 + UGCUGGGGUU UGCCUUGCUUGCG 23 11353
BCLllA-6496 + GUGCUGGGGUUUGCCU UGCUUGCG 24 11354
BCLllA-10891 + CAGGGGUGGGAGGAAAGG 18 11355 BCLllA-10892 + GCAGGGGUGGGAGGAAAGG 19 11356
BCLllA-10893 + GGCAGGGGUGGGAGGAAAGG 20 11357
BCLllA-10894 + UGGCAGGGGUGGGAGGAAAGG 21 11358
BCLllA-10895 + GUGGCAGGGGUGGGAGGAAAGG 22 11359
BCLllA-10896 + GGUGGCAGGGGUGGGAGGAAAGG 23 11360
BCLllA-10897 + GGGUGGCAGGGGUGGGAGGAAAGG 24 11361
BCLllA-10898 + ACACAAAACAUGGGCAGG 18 11362
BCLllA-10899 + CACACAAAACAUGGGCAGG 19 11363
BCLllA-10900 + ACACACAAAACAUGGGCAGG 20 11364
BCLllA-10901 + GACACACAAAACAUGGGCAGG 21 11365
BCLllA-10902 + AGACACACAAAACAUGGGCAGG 22 11366
BCLllA-10903 + GAGACACACAAAACAUGGGCAGG 23 11367
BCLllA-10904 + AGAGACACACAAAACAUGGGCAGG 24 11368
BCLllA-10905 + A A A A A A A A A A AAA AG AG G 18 11369
BCLllA-10906 + AAAAAAAAAAAAAAAGAGG 19 11370
BCLllA-4903 + A AAAAAAAAAAAAAAAG AG G 20 11371
BCLllA-10907 + A A A A A A A A A A A A A A A A AG AG G 21 11372
BCLllA-10908 + A AAAAAAAAAAAAAAAAAG AG G 22 11373
BCLllA-10909 + A A A A A A A A A A A A A A A AAA AG AG G 23 11374
BCLllA-10910 + A AAAAAAAAAAAAAAAAAAAG AG G 24 11375
BCLllA-10911 + AGAGAAGAGAGAUAGAGG 18 11376
BCLllA-10912 + GAGAGAAGAGAGAUAGAGG 19 11377
BCLllA-10913 + AGAGAGAAGAGAGAUAGAGG 20 11378
BCLllA-10914 + GAGAGAGAAGAGAGAUAGAGG 21 11379
BCLllA-10915 + AGAGAGAGAAGAGAGAUAGAGG 22 11380
BCLllA-10916 + GAGAGAGAGAAGAGAGAUAGAGG 23 11381
BCLllA-10917 + AGAGAGAGAGAAGAGAGAUAGAGG 24 11382
BCLllA-10918 + GCAGGAGAGAAGGGGAGG 18 11383
BCLllA-10919 + AGCAGGAGAGAAGGGGAGG 19 11384
BCLllA-4408 + GAGCAGGAGAGAAGGGGAGG 20 11385
BCLllA-10920 + CGAGCAGGAGAGAAGGGGAGG 21 11386
BCLllA-10921 + GCGAGCAGGAGAGAAGGGGAGG 22 11387
BCLllA-10922 + GGCGAGCAGGAGAGAAGGGGAGG 23 11388
BCLllA-10923 + GGGCGAGCAGGAGAGAAGGGGAGG 24 11389
BCLllA-10924 + AUGGCCAGUGCGGGGAGG 18 11390
BCLllA-10925 + AAUGGCCAGUGCGGGGAGG 19 11391
BCLllA-9756 + CAAUGGCCAGUGCGGGGAGG 20 11392
BCLllA-10926 + CCAAUGGCCAGUGCGGGGAGG 21 11393
BCLllA-10927 + GCCAAUGGCCAGUGCGGGGAGG 22 11394
BCLllA-10928 + AGCCAAUGGCCAGUGCGGGGAGG 23 11395
BCLllA-10929 + AAGCCAAUGGCCAGUGCGGGGAGG 24 11396
BCLllA-10930 + GCCAGACGCGGCCCCCGG 18 11397 BCLllA-10931 + CGCCAGACGCGGCCCCCGG 19 11398
BCLllA-4561 + ACGCCAGACGCGGCCCCCGG 20 11399
BCLllA-10932 + GACGCCAGACGCGGCCCCCGG 21 11400
BCLllA-10933 + GGACGCCAGACGCGGCCCCCGG 22 11401
BCLllA-10934 + CGGACGCCAGACGCGGCCCCCGG 23 11402
BCLllA-10935 + GCGGACGCCAGACGCGGCCCCCGG 24 11403
BCLllA-10936 + CGGCGGUGGCGUGGCCGG 18 11404
BCLllA-10937 + GCGGCGGUGGCGUGGCCGG 19 11405
BCLllA-10938 + CGCGGCGGUGGCGUGGCCGG 20 11406
BCLllA-10939 + CCGCGGCGGUGGCGUGGCCGG 21 11407
BCLllA-10940 + GCCGCGGCGGUGGCGUGGCCGG 22 11408
BCLllA-10941 + CGCCGCGGCGGUGGCGUGGCCGG 23 11409
BCLllA-10942 + GCGCCGCGGCGGUGGCGUGGCCGG 24 11410
BCLllA-10943 + CGGCGGCGGCGGCGGCGG 18 11411
BCLllA-10944 + GCGGCGGCGGCGGCGGCGG 19 11412
BCLllA-4479 + GGCGGCGGCGGCGGCGGCGG 20 11413
BCLllA-10945 + CGGCGGCGGCGGCGGCGGCGG 21 11414
BCLllA-10946 + GCGGCGGCGGCGGCGGCGGCGG 22 11415
BCLllA-10947 + GGCGGCGGCGGCGGCGGCGGCGG 23 11416
BCLllA-10948 + CGGCGGCGGCGGCGGCGGCGGCGG 24 11417
BCLllA-10949 + CGGCUCGGUUCACAUCGG 18 11418
BCLllA-10950 + ACGGCUCGGUUCACAUCGG 19 11419
BCLllA-10951 + GACGGCUCGGUUCACAUCGG 20 11420
BCLllA-10952 + CGACGGCUCGGUUCACAUCGG 21 11421
BCLllA-10953 + ACGACGGCUCGGUUCACAUCGG 22 11422
BCLllA-10954 + GACGACGGCUCGGUUCACAUCGG 23 11423
BCLllA-10955 + GGACGACGGCUCGGUUCACAUCGG 24 11424
BCLllA-10956 + AGGGGUGGGAGGAAAGGG 18 11425
BCLllA-10957 + CAGGGGUGGGAGGAAAGGG 19 11426
BCLllA-9759 + GCAGGGGUGGGAGGAAAGGG 20 11427
BCLllA-10958 + GGCAGGGGUGGGAGGAAAGGG 21 11428
BCLllA-10959 + UGGCAGGGGUGGGAGGAAAGGG 22 11429
BCLllA-10960 + GUGGCAGGGGUGGGAGGAAAGGG 23 11430
BCLllA-10961 + GGUGGCAGGGGUGGGAGGAAAGGG 24 11431
BCLllA-10962 + GCGAGCAGGAGAGAAGGG 18 11432
BCLllA-10963 + GGCGAGCAGGAGAGAAGGG 19 11433
BCLllA-4873 + GGGCGAGCAGGAGAGAAGGG 20 11434
BCLllA-10964 + AGGGCGAGCAGGAGAGAAGGG 21 11435
BCLllA-10965 + CAGGGCGAGCAGGAGAGAAGGG 22 11436
BCLllA-10966 + GCAGGGCGAGCAGGAGAGAAGGG 23 11437
BCLllA-10967 + GGCAGGGCGAGCAGGAGAGAAGGG 24 11438
BCLllA-10968 + AAGAAAGGGGUGGCAGGG 18 11439 BCLllA-10969 + GAAGAAAGGGGUGGCAGGG 19 11440
BCLllA-10970 + AGAAGAAAGGGGUGGCAGGG 20 11441
BCLllA-10971 + GAGAAGAAAGGGGUGGCAGGG 21 11442
BCLllA-10972 + AGAGAAGAAAGGGGUGGCAGGG 22 11443
BCLllA-10973 + GAGAGAAGAAAGGGGUGGCAGGG 23 11444
BCLllA-10974 + GGAGAGAAGAAAGGGGUGGCAGGG 24 11445
BCLllA-10975 + GGAGGGGCGGGCCGAGGG 18 11446
BCLllA-10976 + GGGAGGGGCGGGCCGAGGG 19 11447
BCLllA-4875 + GGGGAGGGGCGGGCCGAGGG 20 11448
BCLllA-10977 + GGGGGAGGGGCGGGCCGAGGG 21 11449
BCLllA-10978 + CGGGGGAGGGGCGGGCCGAGGG 22 11450
BCLllA-10979 + CCGGGGGAGGGGCGGGCCGAGGG 23 11451
BCLllA-10980 + CCCGGGGGAGGGGCGGGCCGAGGG 24 11452
BCLllA-10981 + GAGAGAAGGGGAGGAGGG 18 11453
BCLllA-10982 + GGAGAGAAGGGGAGGAGGG 19 11454
BCLllA-4998 + AGGAGAGAAGGGGAGGAGGG 20 11455
BCLllA-10983 + CAGGAGAGAAGGGGAGGAGGG 21 11456
BCLllA-10984 + GCAGGAGAGAAGGGGAGGAGGG 22 11457
BCLllA-10985 + AGCAGGAGAGAAGGGGAGGAGGG 23 11458
BCLllA-10986 + GAGCAGGAGAGAAGGGGAGGAGGG 24 11459
BCLllA-10987 + GCGGCCCCCGGGGGAGGG 18 11460
BCLllA-10988 + CGCGGCCCCCGGGGGAGGG 19 11461
BCLllA-4959 + ACGCGGCCCCCGGGGGAGGG 20 11462
BCLllA-10989 + GACGCGGCCCCCGGGGGAGGG 21 11463
BCLllA-10990 + AGACGCGGCCCCCGGGGGAGGG 22 11464
BCLllA-10991 + CAGACGCGGCCCCCGGGGGAGGG 23 11465
BCLllA-10992 + CCAGACGCGGCCCCCGGGGGAGGG 24 11466
BCLllA-10993 + CCCCGGGGGAGGGGCGGG 18 11467
BCLllA-10994 + CCCCCGGGGGAGGGGCGGG 19 11468
BCLllA-4817 + GCCCCCGGGGGAGGGGCGGG 20 11469
BCLllA-10995 + GGCCCCCGGGGGAGGGGCGGG 21 11470
BCLllA-10996 + CGGCCCCCGGGGGAGGGGCGGG 22 11471
BCLllA-10997 + GCGGCCCCCGGGGGAGGGGCGGG 23 11472
BCLllA-10998 + CGCGGCCCCCGGGGGAGGGGCGGG 24 11473
BCLllA-6504 + GACAUGGUGGGCUGCGGG 18 11474
BCLllA-6505 + AGACAUGGUGGGCUGCGGG 19 11475
BCLllA-6506 + GAGACAUGGUGGGCUGCGGG 20 11476
BCLllA-6507 + CGAGACAUGGUGGGCUGCGGG 21 11477
BCLllA-6508 + GCGAGACAUGGUGGGCUGCGGG 22 11478
BCLllA-6509 + GGCGAGACAUGGUGGGCUGCGGG 23 11479
BCLllA-6510 + CGGCGAGACAUGGUGGGCUGCGGG 24 11480
BCLllA-10999 + GCCAAUGGCCAGUGCGGG 18 11481 BCLllA-11000 + AGCCAAUGGCCAGUGCGGG 19 11482
BCLllA-11001 + AAGCCAAUGGCCAGUGCGGG 20 11483
BCLllA-11002 + CAAGCCAAUGGCCAGUGCGGG 21 11484
BCLllA-11003 + ACAAGCCAAUGGCCAGUGCGGG 22 11485
BCLllA-11004 + GACAAGCCAAUGGCCAGUGCGGG 23 11486
BCLllA-11005 + GGACAAGCCAAUGGCCAGUGCGGG 24 11487
BCLllA-11006 + GGGAGGGGGAGGUGCGGG 18 11488
BCLllA-11007 + GGGGAGGGGGAGGUGCGGG 19 11489
BCLllA-11008 + CGGGGAGGGGGAGGUGCGGG 20 11490
BCLllA-11009 + GCGGGGAGGGGGAGGUGCGGG 21 11491
BCLllA-11010 + UGCGGGGAGGGGGAGGUGCGGG 22 11492
BCLllA-11011 + GUGCGGGGAGGGGGAGGUGCGGG 23 11493
BCLllA-11012 + AGUGCGGGGAGGGGGAGGUGCGGG 24 11494
BCLllA-11013 + CGAGCAGGAGAGAAGGGG 18 11495
BCLllA-11014 + GCGAGCAGGAGAGAAGGGG 19 11496
BCLllA-4476 + GGCGAGCAGGAGAGAAGGGG 20 11497
BCLllA-11015 + GGGCGAGCAGGAGAGAAGGGG 21 11498
BCLllA-11016 + AGGGCGAGCAGGAGAGAAGGGG 22 11499
BCLllA-11017 + CAGGGCGAGCAGGAGAGAAGGGG 23 11500
BCLllA-11018 + GCAGGGCGAGCAGGAGAGAAGGGG 24 11501
BCLllA-11019 + AGAAAGGGGUGGCAGGGG 18 11502
BCLllA-11020 + AAGAAAGGGGUGGCAGGGG 19 11503
BCLllA-9762 + GAAGAAAGGGGUGGCAGGGG 20 11504
BCLllA-11021 + AGAAGAAAGGGGUGGCAGGGG 21 11505
BCLllA-11022 + GAGAAGAAAGGGGUGGCAGGGG 22 11506
BCLllA-11023 + AGAGAAGAAAGGGGUGGCAGGGG 23 11507
BCLllA-11024 + GAGAGAAGAAAGGGGUGGCAGGGG 24 11508
BCLllA-11025 + AUGGACACACAUCAGGGG 18 11509
BCLllA-11026 + AAUGGACACACAUCAGGGG 19 11510
BCLllA-11027 + CAAUGGACACACAUCAGGGG 20 11511
BCLllA-11028 + CCAAUGGACACACAUCAGGGG 21 11512
BCLllA-11029 + ACCAAUGGACACACAUCAGGGG 22 11513
BCLllA-11030 + CACCAAUGGACACACAUCAGGGG 23 11514
BCLllA-11031 + ACACCAAUGGACACACAUCAGGGG 24 11515
BCLllA-11032 + GAGGGGCGGGCCGAGGGG 18 11516
BCLllA-11033 + GGAGGGGCGGGCCGAGGGG 19 11517
BCLllA-4486 + GGGAGGGGCGGGCCGAGGGG 20 11518
BCLllA-11034 + GGGGAGGGGCGGGCCGAGGGG 21 11519
BCLllA-11035 + GGGGGAGGGGCGGGCCGAGGGG 22 11520
BCLllA-11036 + CGGGGGAGGGGCGGGCCGAGGGG 23 11521
BCLllA-11037 + CCGGGGGAGGGGCGGGCCGAGGGG 24 11522
BCLllA-11038 + CAGACGCGGCCCCCGGGG 18 11523 BCLllA-11039 + CCAGACGCGGCCCCCGGGG 19 11524
BCLllA-4816 + GCCAGACGCGGCCCCCGGGG 20 11525
BCLllA-11040 + CGCCAGACGCGGCCCCCGGGG 21 11526
BCLllA-11041 + ACGCCAGACGCGGCCCCCGGGG 22 11527
BCLllA-11042 + GACGCCAGACGCGGCCCCCGGGG 23 11528
BCLllA-11043 + GGACGCCAGACGCGGCCCCCGGGG 24 11529
BCLllA-11044 + CCAAUGGCCAGUGCGGGG 18 11530
BCLllA-11045 + GCCAAUGGCCAGUGCGGGG 19 11531
BCLllA-9763 + AGCCAAUGGCCAGUGCGGGG 20 11532
BCLllA-11046 + AAGCCAAUGGCCAGUGCGGGG 21 11533
BCLllA-11047 + CAAGCCAAUGGCCAGUGCGGGG 22 11534
BCLllA-11048 + ACAAGCCAAUGGCCAGUGCGGGG 23 11535
BCLllA-11049 + GACAAGCCAAUGGCCAGUGCGGGG 24 11536
BCLllA-11050 + GGAGGGGGAGGUGCGGGG 18 11537
BCLllA-11051 + GGGAGGGGGAGGUGCGGGG 19 11538
BCLllA-9764 + GGGGAGGGGGAGGUGCGGGG 20 11539
BCLllA-11052 + CGGGGAGGGGGAGGUGCGGGG 21 11540
BCLllA-11053 + GCGGGGAGGGGGAGGUGCGGGG 22 11541
BCLllA-11054 + UGCGGGGAGGGGGAGGUGCGGGG 23 11542
BCLllA-11055 + GUGCGGGGAGGGGGAGGUGCGGGG 24 11543
BCLllA-11056 + AGACGCGGCCCCCGGGGG 18 11544
BCLllA-11057 + CAGACGCGGCCCCCGGGGG 19 11545
BCLllA-4635 + CCAGACGCGGCCCCCGGGGG 20 11546
BCLllA-11058 + GCCAGACGCGGCCCCCGGGGG 21 11547
BCLllA-11059 + CGCCAGACGCGGCCCCCGGGGG 22 11548
BCLllA-11060 + ACGCCAGACGCGGCCCCCGGGGG 23 11549
BCLllA-11061 + GACGCCAGACGCGGCCCCCGGGGG 24 11550
BCLllA-11062 + UGGGAGGAAAGGGUGGGG 18 11551
BCLllA-11063 + GUGGGAGGAAAGGGUGGGG 19 11552
BCLllA-9766 + GGUGGGAGGAAAGGGUGGGG 20 11553
BCLllA-11064 + GGGUGGGAGGAAAGGGUGGGG 21 11554
BCLllA-11065 + GGGGUGGGAGGAAAGGGUGGGG 22 11555
BCLllA-11066 + AGGGGUGGGAGGAAAGGGUGGGG 23 11556
BCLllA-11067 + CAGGGGUGGGAGGAAAGGGUGGGG 24 11557
BCLllA-11068 + AGACACACAAAACAUGGG 18 11558
BCLllA-11069 + GAGACACACAAAACAUGGG 19 11559
BCLllA-11070 + AGAGACACACAAAACAUGGG 20 11560
BCLllA-11071 + CAGAGACACACAAAACAUGGG 21 11561
BCLllA-11072 + ACAGAGACACACAAAACAUGGG 22 11562
BCLllA-11073 + GACAGAGACACACAAAACAUGGG 23 11563
BCLllA-11074 + GGACAGAGACACACAAAACAUGGG 24 11564
BCLllA-11075 + GCAAUGGUUCCAGAUGGG 18 11565 BCLllA-11076 + GGCAAUGGUUCCAGAUGGG 19 11566
BCLllA-11077 + CGGCAAUGGUUCCAGAUGGG 20 11567
BCLllA-11078 + ACGGCAAUGGUUCCAGAUGGG 21 11568
BCLllA-11079 + CACGGCAAUGGUUCCAGAUGGG 22 11569
BCLllA-11080 + ACACGGCAAUGGUUCCAGAUGGG 23 11570
BCLllA-11081 + UACACGGCAAUGGUUCCAGAUGGG 24 11571
BCLllA-11082 + GUGGGAGGAAAGGGUGGG 18 11572
BCLllA-11083 + GGUGGGAGGAAAGGGUGGG 19 11573
BCLllA-9767 + GGGUGGGAGGAAAGGGUGGG 20 11574
BCLllA-11084 + GGGGUGGGAGGAAAGGGUGGG 21 11575
BCLllA-11085 + AGGGGUGGGAGGAAAGGGUGGG 22 11576
BCLllA-11086 + CAGGGGUGGGAGGAAAGGGUGGG 23 11577
BCLllA-11087 + GCAGGGGUGGGAGGAAAGGGUGGG 24 11578
BCLllA-11088 + AGGGGUGGCAGGGGUGGG 18 11579
BCLllA-11089 + AAGGGGUGGCAGGGGUGGG 19 11580
BCLllA-9768 + AAAGGGGUGGCAGGGGUGGG 20 11581
BCLllA-11090 + GAAAGGGGUGGCAGGGGUGGG 21 11582
BCLllA-11091 + AGAAAGGGGUGGCAGGGGUGGG 22 11583
BCLllA-11092 + AAGAAAGGGGUGGCAGGGGUGGG 23 11584
BCLllA-11093 + GAAGAAAGGGGUGGCAGGGGUGGG 24 11585
BCLllA-11094 + UGAACGUCAGGAGUCUGG 18 11586
BCLllA-11095 + UUGAACGUCAGGAGUCUGG 19 11587
BCLllA-11096 + CU UGAACGUCAGGAGUCUGG 20 11588
BCLllA-11097 + ACUUGAACGUCAGGAGUCUGG 21 11589
BCLllA-11098 + AACUUGAACGUCAGGAGUCUGG 22 11590
BCLllA-11099 + GAACUUGAACGUCAGGAGUCUGG 23 11591
BCLllA-11100 + CGAACUUGAACGUCAGGAGUCUGG 24 11592
BCLllA-11101 + GCCGCGGCGGUGGCGUGG 18 11593
BCLllA-11102 + CGCCGCGGCGGUGGCGUGG 19 11594
BCLllA-11103 + GCGCCGCGGCGGUGGCGUGG 20 11595
BCLllA-11104 + AGCGCCGCGGCGGUGGCGUGG 21 11596
BCLllA-11105 + GAGCGCCGCGGCGGUGGCGUGG 22 11597
BCLllA-11106 + CGAGCGCCGCGGCGGUGGCGUGG 23 11598
BCLllA-11107 + GCGAGCGCCGCGGCGGUGGCGUGG 24 11599
BCLllA-11108 + GGUGGGAGGAAAGGGUGG 18 11600
BCLllA-11109 + GGGUGGGAGGAAAGGGUGG 19 11601
BCLllA-9770 + GGGGUGGGAGGAAAGGGUGG 20 11602
BCLllA-11110 + AGGGGUGGGAGGAAAGGGUGG 21 11603
BCLllA-11111 + CAGGGGUGGGAGGAAAGGGUGG 22 11604
BCLllA-11112 + GCAGGGGUGGGAGGAAAGGGUGG 23 11605
BCLllA-11113 + GGCAGGGGUGGGAGGAAAGGGUGG 24 11606
BCLllA-11114 + GAGAGAAGAAAGGGGUGG 18 11607 BCLllA-11115 + GGAGAGAAGAAAGGGGUGG 19 11608
BCLllA-11116 + GGGAGAGAAGAAAGGGGUGG 20 11609
BCLllA-11117 + CGGGAGAGAAGAAAGGGGUGG 21 11610
BCLllA-11118 + CCGGGAGAGAAGAAAGGGGUGG 22 11611
BCLllA-11119 + GCCGGGAGAGAAGAAAGGGGUGG 23 11612
BCLllA-11120 + GGCCGGGAGAGAAGAAAGGGGUGG 24 11613
BCLllA-11121 + AAGGGGUGGCAGGGGUGG 18 11614
BCLllA-11122 + AAAGGGGUGGCAGGGGUGG 19 11615
BCLllA-11123 + GAAAGGGGUGGCAGGGGUGG 20 11616
BCLllA-11124 + AGAAAGGGGUGGCAGGGGUGG 21 11617
BCLllA-11125 + AAGAAAGGGGUGGCAGGGGUGG 22 11618
BCLllA-11126 + GAAGAAAGGGGUGGCAGGGGUGG 23 11619
BCLllA-11127 + AGAAGAAAGGGGUGGCAGGGGUGG 24 11620
BCLllA-11128 + AGGGAAGAUGAAUUGUGG 18 11621
BCLllA-11129 + CAGGGAAGAUGAAUUGUGG 19 11622
BCLllA-11130 + GCAGGGAAGAUGAAUUGUGG 20 11623
BCLllA-11131 + CGCAGGGAAGAUGAAU UGUGG 21 11624
BCLllA-11132 + GCGCAGGGAAGAUGAAUUGUGG 22 11625
BCLllA-11133 + GGCGCAGGGAAGAUGAAUUGUGG 23 11626
BCLllA-11134 + UGGCGCAGGGAAGAUGAAUUGUGG 24 11627
BCLllA-6524 + UGCUUGCGGCGAGACAUG 18 11628
BCLllA-6525 + U UGCUUGCGGCGAGACAUG 19 11629
BCLllA-6526 + CUUGCUUGCGGCGAGACAUG 20 11630
BCLllA-6527 + CCUUGCU UGCGGCGAGACAUG 21 11631
BCLllA-6528 + GCCUUGCUUGCGGCGAGACAUG 22 11632
BCLllA-6529 + UGCCU UGCUUGCGGCGAGACAUG 23 11633
BCLllA-6530 + UUGCCUUGCUUGCGGCGAGACAUG 24 11634
BCLllA-6544 + GCGAGACAUGGUGGGCUG 18 11635
BCLllA-6545 + GGCGAGACAUGGUGGGCUG 19 11636
BCLllA-5361 + CGGCGAGACAUGGUGGGCUG 20 11637
BCLllA-6546 + GCGGCGAGACAUGGUGGGCUG 21 11638
BCLllA-6547 + UGCGGCGAGACAUGGUGGGCUG 22 11639
BCLllA-6548 + U UGCGGCGAGACAUGGUGGGCUG 23 11640
BCLllA-6549 + CUUGCGGCGAGACAUGGUGGGCUG 24 11641
BCLllA-6550 + U UCCCGUUUGCU UAAGUG 18 11642
BCLllA-6551 + AUUCCCGU UUGCUUAAGUG 19 11643
BCLllA-6552 + AAUUCCCGUUUGCUUAAGUG 20 11644
BCLllA-6553 + GAAUUCCCGU UUGCUUAAGUG 21 11645
BCLllA-6554 + AGAAUUCCCGUUUGCU UAAGUG 22 11646
BCLllA-6555 + GAGAAUUCCCGUUUGCUUAAGUG 23 11647
BCLllA-6556 + CGAGAAUUCCCGUUUGCUUAAGUG 24 11648
BCLllA-11135 + ACAAGCCAAUGGCCAGUG 18 11649 BCLllA-11136 + GACAAGCCAAUGGCCAGUG 19 11650
BCLllA-9773 + GGACAAGCCAAUGGCCAGUG 20 11651
BCLllA-11137 + AGGACAAGCCAAUGGCCAGUG 21 11652
BCLllA-11138 + CAGGACAAGCCAAUGGCCAGUG 22 11653
BCLllA-11139 + CCAGGACAAGCCAAUGGCCAGUG 23 11654
BCLllA-11140 + ACCAGGACAAGCCAAUGGCCAGUG 24 11655
BCLllA-11141 + UGCGGGGAGGGGGAGGUG 18 11656
BCLllA-11142 + GUGCGGGGAGGGGGAGGUG 19 11657
BCLllA-9774 + AGUGCGGGGAGGGGGAGGUG 20 11658
BCLllA-11143 + CAGUGCGGGGAGGGGGAGGUG 21 11659
BCLllA-11144 + CCAGUGCGGGGAGGGGGAGGUG 22 11660
BCLllA-11145 + GCCAGUGCGGGGAGGGGGAGGUG 23 11661
BCLllA-11146 + GGCCAGUGCGGGGAGGGGGAGGUG 24 11662
BCLllA-11147 + GGGUGGGAGGAAAGGGUG 18 11663
BCLllA-11148 + GGGGUGGGAGGAAAGGGUG 19 11664
BCLllA-9775 + AGGGGUGGGAGGAAAGGGUG 20 11665
BCLllA-11149 + CAGGGGUGGGAGGAAAGGGUG 21 11666
BCLllA-11150 + GCAGGGGUGGGAGGAAAGGGUG 22 11667
BCLllA-11151 + GGCAGGGGUGGGAGGAAAGGGUG 23 11668
BCLllA-11152 + UGGCAGGGGUGGGAGGAAAGGGUG 24 11669
BCLllA-11153 + CGCAGGGAAGAUGAAUUG 18 11670
BCLllA-11154 + GCGCAGGGAAGAUGAAUUG 19 11671
BCLllA-9777 + GGCGCAGGGAAGAUGAAUUG 20 11672
BCLllA-11155 + UGGCGCAGGGAAGAUGAAUUG 21 11673
BCLllA-11156 + AUGGCGCAGGGAAGAUGAAUUG 22 11674
BCLllA-11157 + GAUGGCGCAGGGAAGAUGAAUUG 23 11675
BCLllA-11158 + AGAUGGCGCAGGGAAGAUGAAUUG 24 11676
BCLllA-11159 + UUGACAUCCAAAAUAAAU 18 11677
BCLllA-11160 + UUUGACAUCCAAAAUAAAU 19 11678
BCLllA-11161 + U U UUGACAUCCAAAAUAAAU 20 11679
BCLllA-11162 + CUUUUGACAUCCAAAAUAAAU 21 11680
BCLllA-11163 + CCUUUUGACAUCCAAAAUAAAU 22 11681
BCLllA-11164 + GCCUUUUGACAUCCAAAAUAAAU 23 11682
BCLllA-11165 + UGCCUUUUGACAUCCAAAAUAAAU 24 11683
BCLllA-11166 + ACACCAAUGGACACACAU 18 11684
BCLllA-11167 + CACACCAAUGGACACACAU 19 11685
BCLllA-11168 + UCACACCAAUGGACACACAU 20 11686
BCLllA-11169 + CU CACACCAAUGGACACACAU 21 11687
BCLllA-11170 + GCUCACACCAAUGGACACACAU 22 11688
BCLllA-11171 + AGCUCACACCAAUGGACACACAU 23 11689
BCLllA-11172 + AAGCUCACACCAAUGGACACACAU 24 11690
BCLllA-11173 + CGACGGCUCGGUUCACAU 18 11691 BCLllA-11174 + ACGACGGCUCGGUUCACAU 19 11692
BCLllA-9582 + GACGACGGCUCGGUUCACAU 20 11693
BCLllA-11175 + GGACGACGGCUCGGUUCACAU 21 11694
BCLllA-11176 + CGGACGACGGCUCGGUUCACAU 22 11695
BCLllA-11177 + GCGGACGACGGCUCGGUUCACAU 23 11696
BCLllA-11178 + GGCGGACGACGGCUCGGUUCACAU 24 11697
BCLllA-11179 + UGCGGACGUGACGUCCCU 18 11698
BCLllA-11180 + GUGCGGACGUGACGUCCCU 19 11699
BCLllA-11181 + AGUGCGGACGUGACGUCCCU 20 11700
BCLllA-11182 + AAGUGCGGACGUGACGUCCCU 21 11701
BCLllA-11183 + CAAGUGCGGACGUGACGUCCCU 22 11702
BCLllA-11184 + UCAAGUGCGGACGUGACGUCCCU 23 11703
BCLllA-11185 + UUCAAGUGCGGACGUGACGUCCCU 24 11704
BCLllA-6618 + GGCGAGACAUGGUGGGCU 18 11705
BCLllA-6619 + CGGCGAGACAUGGUGGGCU 19 11706
BCLllA-6620 + GCGGCGAGACAUGGUGGGCU 20 11707
BCLllA-6621 + UGCGGCGAGACAUGGUGGGCU 21 11708
BCLllA-6622 + UUGCGGCGAGACAUGGUGGGCU 22 11709
BCLllA-6623 + CUUGCGGCGAGACAUGGUGGGCU 23 11710
BCLllA-6624 + GCUUGCGGCGAGACAUGGUGGGCU 24 11711
BCLllA-11186 + CUCU UUUACCUCGACUCU 18 11712
BCLllA-11187 + UCUCUUUUACCUCGACUCU 19 11713
BCLllA-9585 + AUCUCUUU UACCUCGACUCU 20 11714
BCLllA-11188 + UAUCUCUU UUACCUCGACUCU 21 11715
BCLllA-11189 + UUAUCUCU UUUACCUCGACUCU 22 11716
BCLllA-11190 + UUUAUCUCUUUUACCUCGACUCU 23 11717
BCLllA-11191 + CUUUAUCUCUUUUACCUCGACUCU 24 11718
BCLllA-11192 + U G AG CU G CAAG U U CAAG U 18 11719
BCLllA-11193 + CUGAGCUGCAAGUUCAAGU 19 11720
BCLllA-11194 + CCUGAGCUGCAAGUUCAAGU 20 11721
BCLllA-11195 + CCCUGAGCUGCAAGUUCAAGU 21 11722
BCLllA-11196 + CCCCUGAGCUGCAAGUUCAAGU 22 11723
BCLllA-11197 + CCCCCUGAGCUGCAAGUUCAAGU 23 11724
BCLllA-11198 + CCCCCCUGAGCUGCAAGUUCAAGU 24 11725
BCLllA-11199 + GACAAGCCAAUGGCCAGU 18 11726
BCLllA-11200 + GGACAAGCCAAUGGCCAGU 19 11727
BCLllA-11201 + AGGACAAGCCAAUGGCCAGU 20 11728
BCLllA-11202 + CAGGACAAGCCAAUGGCCAGU 21 11729
BCLllA-11203 + CCAGGACAAGCCAAUGGCCAGU 22 11730
BCLllA-11204 + ACCAGGACAAGCCAAUGGCCAGU 23 11731
BCLllA-11205 + GACCAGGACAAGCCAAUGGCCAGU 24 11732
BCLllA-11206 + CCCUGCGAACUUGAACGU 18 11733 BCLllA-11207 + UCCCUGCGAACUUGAACGU 19 11734
BCLllA-11208 + GUCCCUGCGAACUUGAACGU 20 11735
BCLllA-11209 + CGUCCCUGCGAACUUGAACGU 21 11736
BCLllA-11210 + ACGUCCCUGCGAACUUGAACGU 22 11737
BCLllA-11211 + GACGUCCCUGCGAACU UGAACGU 23 11738
BCLllA-11212 + UGACGUCCCUGCGAACU UGAACGU 24 11739
BCLllA-11213 + GUGCGGGGAGGGGGAGGU 18 11740
BCLllA-11214 + AGUGCGGGGAGGGGGAGGU 19 11741
BCLllA-11215 + CAGUGCGGGGAGGGGGAGGU 20 11742
BCLllA-11216 + CCAGUGCGGGGAGGGGGAGGU 21 11743
BCLllA-11217 + GCCAGUGCGGGGAGGGGGAGGU 22 11744
BCLllA-11218 + GGCCAGUGCGGGGAGGGGGAGGU 23 11745
BCLllA-11219 + UGGCCAGUGCGGGGAGGGGGAGGU 24 11746
BCLllA-11220 + GGGGUGGGAGGAAAGGGU 18 11747
BCLllA-11221 + AGGGGUGGGAGGAAAGGGU 19 11748
BCLllA-9784 + CAGGGGUGGGAGGAAAGGGU 20 11749
BCLllA-11222 + GCAGGGGUGGGAGGAAAGGGU 21 11750
BCLllA-11223 + GGCAGGGGUGGGAGGAAAGGGU 22 11751
BCLllA-11224 + UGGCAGGGGUGGGAGGAAAGGGU 23 11752
BCLllA-11225 + GUGGCAGGGGUGGGAGGAAAGGGU 24 11753
BCLllA-11226 + ACAUCGGGAGAGCCGGGU 18 11754
BCLllA-11227 + CACAUCGGGAGAGCCGGGU 19 11755
BCLllA-11228 + UCACAUCGGGAGAGCCGGGU 20 11756
BCLllA-11229 + UUCACAUCGGGAGAGCCGGGU 21 11757
BCLllA-11230 + GUUCACAUCGGGAGAGCCGGGU 22 11758
BCLllA-11231 + GGUUCACAUCGGGAGAGCCGGGU 23 11759
BCLllA-11232 + CGGU UCACAUCGGGAGAGCCGGGU 24 11760
BCLllA-11233 + GAAAGGGGUGGCAGGGGU 18 11761
BCLllA-11234 + AGAAAGGGGUGGCAGGGGU 19 11762
BCLllA-9785 + AAGAAAGGGGUGGCAGGGGU 20 11763
BCLllA-11235 + GAAGAAAGGGGUGGCAGGGGU 21 11764
BCLllA-11236 + AGAAGAAAGGGGUGGCAGGGGU 22 11765
BCLllA-11237 + GAGAAGAAAGGGGUGGCAGGGGU 23 11766
BCLllA-11238 + AGAGAAGAAAGGGGUGGCAGGGGU 24 11767
BCLllA-11239 + GCAGGGAAGAUGAAUUGU 18 11768
BCLllA-11240 + CGCAGGGAAGAUGAAU UGU 19 11769
BCLllA-9786 + GCGCAGGGAAGAUGAAUUGU 20 11770
BCLllA-11241 + GGCGCAGGGAAGAUGAAUUGU 21 11771
BCLllA-11242 + UGGCGCAGGGAAGAUGAAUUGU 22 11772
BCLllA-11243 + AUGGCGCAGGGAAGAUGAAUUGU 23 11773
BCLllA-11244 + GAUGGCGCAGGGAAGAUGAAUUGU 24 11774
BCLllA-11245 + GCGCAGGGAAGAUGAAUU 18 11775 BCLllA-11246 + GGCGCAGGGAAGAUGAAUU 19 11776
BCLllA-11247 + UGGCGCAGGGAAGAUGAAUU 20 11777
BCLllA-11248 + AUGGCGCAGGGAAGAUGAAUU 21 11778
BCLllA-11249 + GAUGGCGCAGGGAAGAUGAAUU 22 11779
BCLllA-11250 + AGAUGGCGCAGGGAAGAUGAAUU 23 11780
BCLllA-11251 + AAGAUGGCGCAGGGAAGAUGAAUU 24 11781
BCLllA-11252 - GCAGGACUAGAAGCAAAA 18 11782
BCLllA-11253 - CGCAGGACUAGAAGCAAAA 19 11783
BCLllA-11254 - GCGCAGGACUAGAAG C A A A A 20 11784
BCLllA-11255 - CGCGCAGGACUAGAAGCAAAA 21 11785
BCLllA-11256 - G CG CG CAG G ACU AG AAG CAAAA 22 11786
BCLllA-11257 - AGCGCGCAGGACUAGAAG CAAAA 23 11787
BCLllA-11258 - GAGCGCGCAGGACUAGAAGCAAAA 24 11788
BCLllA-6678 - CCCCAGCACUUAAGCAAA 18 11789
BCLllA-6679 - ACCCCAGCACUUAAGCAAA 19 11790
BCLllA-5443 - AACCCCAGCACUUAAGCAAA 20 11791
BCLllA-6680 - AAACCCCAGCACUUAAGCAAA 21 11792
BCLllA-6681 - CAAACCCCAGCACUUAAGCAAA 22 11793
BCLllA-6682 - GCAAACCCCAGCACUUAAGCAAA 23 11794
BCLllA-6683 - GGCAAACCCCAGCACUUAAGCAAA 24 11795
BCLllA-11259 - CG AG G U A A A AG AG A U AAA 18 11796
BCLllA-11260 - U CG AG G U A A A AG AG A U AAA 19 11797
BCLllA-9693 - G U CG AGG U AAAAG AG AU AAA 20 11798
BCLllA-11261 - AGUCGAGGUAAAAGAGAUAAA 21 11799
BCLllA-11262 - GAGUCGAGGUAAAAGAGAUAAA 22 11800
BCLllA-11263 - AG AG U CG AGG U AAAAG AG AU AAA 23 11801
BCLllA-11264 - GAGAGUCGAGGUAAAAGAGAUAAA 24 11802
BCLllA-6698 - ACCCCAGCACUUAAGCAA 18 11803
BCLllA-6699 - AACCCCAGCACUUAAGCAA 19 11804
BCLllA-6700 - AAACCCCAGCACUUAAGCAA 20 11805
BCLllA-6701 - CAAACCCCAGCACUUAAGCAA 21 11806
BCLllA-6702 - GCAAACCCCAGCACUUAAGCAA 22 11807
BCLllA-6703 - GGCAAACCCCAGCACUUAAGCAA 23 11808
BCLllA-6704 - AGGCAAACCCCAGCACUUAAGCAA 24 11809
BCLllA-11265 - CGGCUCUCCCGAUGUGAA 18 11810
BCLllA-11266 - CCGGCUCUCCCGAUGUGAA 19 11811
BCLllA-11267 - CCCGGCUCUCCCGAUGUGAA 20 11812
BCLllA-11268 - ACCCGGCUCUCCCGAUGUGAA 21 11813
BCLllA-11269 - AACCCGGCUCUCCCGAUGUGAA 22 11814
BCLllA-11270 - UAACCCGGCUCUCCCGAUGUGAA 23 11815
BCLllA-11271 - CUAACCCGGCUCUCCCGAUGUGAA 24 11816
BCLllA-11272 - U CG AGG U AAAAG AG AU AA 18 11817 BCLllA-11273 - GUCGAGGUAAAAGAGAUAA 19 11818
BCLllA-9699 - AG U CG AGG U AAAAG AG AU AA 20 11819
BCLllA-11274 - G AG U CG AGG U AAAAG AG AU AA 21 11820
BCLllA-11275 - AGAGUCGAGGUAAAAGAGAUAA 22 11821
BCLllA-11276 - GAG AG U CG AGG U AAAAG AG AU AA 23 11822
BCLllA-11277 - CG AG AG U CG AGG U AAAAG AG AU AA 24 11823
BCLllA-11278 - CUCCGAGAGUCGAGGUAA 18 11824
BCLllA-11279 - CCUCCGAGAGUCGAGGUAA 19 11825
BCLllA-11280 - ACCUCCGAGAGUCGAGGUAA 20 11826
BCLllA-11281 - AACCUCCGAGAGUCGAGGUAA 21 11827
BCLllA-11282 - AAACCUCCGAGAGUCGAGGUAA 22 11828
BCLllA-11283 - AAAACCUCCGAGAGUCGAGGUAA 23 11829
BCLllA-11284 - AAAAACCUCCGAGAGUCGAGGUAA 24 11830
BCLllA-11285 - ACUUGAACUUGCAGCUCA 18 11831
BCLllA-11286 - CACUUGAACUUGCAGCUCA 19 11832
BCLllA-9705 - GCACUUGAACUUGCAGCUCA 20 11833
BCLllA-11287 - CGCACUUGAACUUGCAGCUCA 21 11834
BCLllA-11288 - CCGCACUUGAACUUGCAGCUCA 22 11835
BCLllA-11289 - UCCGCACUUGAACUUGCAGCUCA 23 11836
BCLllA-11290 - GUCCGCACUUGAACUUGCAGCUCA 24 11837
BCLllA-11291 - GCAAAAGCGAGGGGGAGA 18 11838
BCLllA-11292 - AGCAAAAGCGAGGGGGAGA 19 11839
BCLllA-4934 - A AG C A A A AG CGAGGGGGAGA 20 11840
BCLllA-11293 - G A AG C A A A AG CGAGGGGGAGA 21 11841
BCLllA-11294 - AGAAGCAAAAGCGAGGGGGAGA 22 11842
BCLllA-11295 - UAGAAGCAAAAGCGAGGGGGAGA 23 11843
BCLllA-11296 - CUAGAAGCAAAAGCGAGGGGGAGA 24 11844
BCLllA-11297 - GACUAGAAGCAAAAGCGA 18 11845
BCLllA-11298 - GGACUAGAAGCAAAAGCGA 19 11846
BCLllA-9710 - AGGACUAGAAGCAAAAGCGA 20 11847
BCLllA-11299 - CAGGACUAGAAGCAAAAGCGA 21 11848
BCLllA-11300 - GCAGGACUAGAAG C A A A AG CG A 22 11849
BCLllA-11301 - CGCAGGACUAGAAGCAAAAGCGA 23 11850
BCLllA-11302 - GCGCAGGACUAGAAGCAAAAGCGA 24 11851
BCLllA-11303 - AAGCAAAAGCGAGGGGGA 18 11852
BCLllA-11304 - G A AG C A A A AG CGAGGGGGA 19 11853
BCLllA-4972 - AGAAGCAAAAGCGAGGGGGA 20 11854
BCLllA-11305 - UAGAAGCAAAAGCGAGGGGGA 21 11855
BCLllA-11306 - CUAGAAGCAAAAGCGAGGGGGA 22 11856
BCLllA-11307 - ACUAGAAGCAAAAGCGAGGGGGA 23 11857
BCLllA-11308 - GACUAGAAGCAAAAGCGAGGGGGA 24 11858
BCLllA-11309 - G U CG AGG U AAAAG AG AU A 18 11859 BCLllA-11310 - AGUCGAGGUAAAAGAGAUA 19 11860
BCLllA-11311 - GAGUCGAGGUAAAAGAGAUA 20 11861
BCLllA-11312 - AG AG U CG AGG U AAAAG AG AU A 21 11862
BCLllA-11313 - GAGAGUCGAGGUAAAAGAGAUA 22 11863
BCLllA-11314 - CGAGAGUCGAGGUAAAAGAGAUA 23 11864
BCLllA-11315 - CCG AG AG U CG AGG U AAAAG AG AU A 24 11865
BCLllA-11316 - GGGACGUCACGUCCGCAC 18 11866
BCLllA-11317 - AGGGACGUCACGUCCGCAC 19 11867
BCLllA-11318 - CAGGGACGUCACGUCCGCAC 20 11868
BCLllA-11319 - GCAGGGACGUCACGUCCGCAC 21 11869
BCLllA-11320 - CGCAGGGACGUCACGUCCGCAC 22 11870
BCLllA-11321 - U CGCAGGG ACG U CACG U CCG CAC 23 11871
BCLllA-11322 - U U CG CAGGG ACG U CACG U CCG CAC 24 11872
BCLllA-11323 - AUAAUUAUUAAUAAUCAC 18 11873
BCLllA-11324 - AAUAAUUAUUAAUAAUCAC 19 11874
BCLllA-11325 - UAAUAAUUAUUAAUAAUCAC 20 11875
BCLllA-11326 - AUAAUAAUUAUUAAUAAUCAC 21 11876
BCLllA-11327 - AAUAAUAAUUAUUAAUAAUCAC 22 11877
BCLllA-11328 - UAAUAAUAAUUAUUAAUAAUCAC 23 11878
BCLllA-11329 - GUAAUAAUAAUUAUUAAUAAUCAC 24 11879
BCLllA-11330 - CAUUUUUAAAUUUUUCAC 18 11880
BCLllA-11331 - GCAUUUUUAAAUUUUUCAC 19 11881
BCLllA-11332 - UGCAUUUUUAAAUUUUUCAC 20 11882
BCLllA-11333 - AUGCAUUUUUAAAUUUUUCAC 21 11883
BCLllA-11334 - CAUGCAUUUUUAAAUUUUUCAC 22 11884
BCLllA-11335 - GCAUGCAUUUUUAAAUUUUUCAC 23 11885
BCLllA-11336 - UGCAUGCAUUUUUAAAUUUUUCAC 24 11886
BCLllA-11337 - CACGAGAGCGCGCAGGAC 18 11887
BCLllA-11338 - UCACGAGAGCGCGCAGGAC 19 11888
BCLllA-11339 - AUCACGAGAGCGCGCAGGAC 20 11889
BCLllA-11340 - AAUCACGAGAGCGCGCAGGAC 21 11890
BCLllA-11341 - U AAU CACG AG AG CG CG CAGG AC 22 11891
BCLllA-11342 - AUAAUCACGAGAGCGCGCAGGAC 23 11892
BCLllA-11343 - AAUAAUCACGAGAGCGCGCAGGAC 24 11893
BCLllA-11344 - UCGGCCCGCCCCUCCCCC 18 11894
BCLllA-11345 - CUCGGCCCGCCCCUCCCCC 19 11895
BCLllA-9716 - CCUCGGCCCGCCCCUCCCCC 20 11896
BCLllA-11346 - CCCUCGGCCCGCCCCUCCCCC 21 11897
BCLllA-11347 - CCCCUCGGCCCGCCCCUCCCCC 22 11898
BCLllA-11348 - UCCCCUCGGCCCGCCCCUCCCCC 23 11899
BCLllA-11349 - CUCCCCUCGGCCCGCCCCUCCCCC 24 11900
BCLllA-11350 - CUCGGCCCGCCCCUCCCC 18 11901 BCLllA-11351 - CCUCGGCCCGCCCCUCCCC 19 11902
BCLllA-9717 - CCCUCGGCCCGCCCCUCCCC 20 11903
BCLllA-11352 - CCCCUCGGCCCGCCCCUCCCC 21 11904
BCLllA-11353 - UCCCCUCGGCCCGCCCCUCCCC 22 11905
BCLllA-11354 - CUCCCCUCGGCCCGCCCCUCCCC 23 11906
BCLllA-11355 - CCUCCCCUCGGCCCGCCCCUCCCC 24 11907
BCLllA-11356 - CCUCGGCCCGCCCCUCCC 18 11908
BCLllA-11357 - CCCUCGGCCCGCCCCUCCC 19 11909
BCLllA-11358 - CCCCUCGGCCCGCCCCUCCC 20 11910
BCLllA-11359 - UCCCCUCGGCCCGCCCCUCCC 21 11911
BCLllA-11360 - CUCCCCUCGGCCCGCCCCUCCC 22 11912
BCLllA-11361 - CCUCCCCUCGGCCCGCCCCUCCC 23 11913
BCLllA-11362 - CCCUCCCCUCGGCCCGCCCCUCCC 24 11914
BCLllA-11363 - GGGCCGCGUCUGGCGUCC 18 11915
BCLllA-11364 - GGGGCCGCGUCUGGCGUCC 19 11916
BCLllA-11365 - GGGGGCCGCGUCUGGCGUCC 20 11917
BCLllA-11366 - CGGGGGCCGCGUCUGGCGUCC 21 11918
BCLllA-11367 - CCGGGGGCCGCGUCUGGCGUCC 22 11919
BCLllA-11368 - CCCGGGGGCCGCGUCUGGCGUCC 23 11920
BCLllA-11369 - CCCCGGGGGCCGCGUCUGGCGUCC 24 11921
BCLllA-11370 - AG G AC U AG AAG CAAAAG C 18 11922
BCLllA-11371 - C AG G AC U AG AAG CAAAAG C 19 11923
BCLllA-11372 - GCAGGACUAGAAGCAAAAGC 20 11924
BCLllA-11373 - CGCAGGACUAGAAGCAAAAGC 21 11925
BCLllA-11374 - GCGCAGGACUAGAAGCAAAAGC 22 11926
BCLllA-11375 - CGCGCAGGACUAGAAG CAAAAG C 23 11927
BCLllA-11376 - G CG CG CAG G AC U AG AAG CAAAAG C 24 11928
BCLllA-11377 - CCUGACGU UCAAGUUCGC 18 11929
BCLllA-11378 - UCCUGACGUUCAAGUUCGC 19 11930
BCLllA-9566 - CUCCUGACGU UCAAGUUCGC 20 11931
BCLllA-11379 - ACUCCUGACGUUCAAGU UCGC 21 11932
BCLllA-11380 - GACUCCUGACGUUCAAGUUCGC 22 11933
BCLllA-11381 - AGACUCCUGACGUUCAAGUUCGC 23 11934
BCLllA-11382 - CAGACUCCUGACGUUCAAGUUCGC 24 11935
BCLllA-11383 - UAAUAAUUAUUAAUAAUC 18 11936
BCLllA-11384 - AUAAUAAUUAUUAAUAAUC 19 11937
BCLllA-11385 - AAUAAUAAUUAUUAAUAAUC 20 11938
BCLllA-11386 - UAAUAAUAAUUAUUAAUAAUC 21 11939
BCLllA-11387 - GUAAUAAUAAUUAUUAAUAAUC 22 11940
BCLllA-11388 - AGUAAUAAUAAUUAUUAAUAAUC 23 11941
BCLllA-11389 - UAGUAAUAAUAAUUAUUAAUAAUC 24 11942
BCLllA-11390 - AAAAACCCUCAUCCCAUC 18 11943 BCLllA-11391 - AAAAAACCCUCAUCCCAUC 19 11944
BCLllA-9730 - GAAAAAACCCUCAUCCCAUC 20 11945
BCLllA-11392 - GGAAAAAACCCUCAUCCCAUC 21 11946
BCLllA-11393 - GGGAAAAAACCCUCAUCCCAUC 22 11947
BCLllA-11394 - GGGGAAAAAACCCUCAUCCCAUC 23 11948
BCLllA-11395 - GGGGGAAAAAACCCUCAUCCCAUC 24 11949
BCLllA-11396 - CACUUGAACUUGCAGCUC 18 11950
BCLllA-11397 - GCACUUGAACUUGCAGCUC 19 11951
BCLllA-9569 - CGCACUUGAACUUGCAGCUC 20 11952
BCLllA-11398 - CCGCACUUGAACUUGCAGCUC 21 11953
BCLllA-11399 - UCCGCACUUGAACUUGCAGCUC 22 11954
BCLllA-11400 - GUCCGCACUUGAACUUGCAGCUC 23 11955
BCLllA-11401 - CGUCCGCACUUGAACUUGCAGCUC 24 11956
BCLllA-11402 - UGCAUUUUUAAAUUUUUC 18 11957
BCLllA-11403 - AUGCAUUUUUAAAUUUUUC 19 11958
BCLllA-11404 - CAUGCAUUUUUAAAUUUUUC 20 11959
BCLllA-11405 - GCAUGCAUUUUUAAAUUUUUC 21 11960
BCLllA-11406 - UGCAUGCAUUUUUAAAUUUUUC 22 11961
BCLllA-11407 - GUGCAUGCAUUUUUAAAUUUUUC 23 11962
BCLllA-11408 - UGUGCAUGCAUUUUUAAAUUUUUC 24 11963
BCLllA-11409 - G AG G U AAAAG AG A U AAAG 18 11964
BCLllA-11410 - CG AG G U AAAAG AG A U AAAG 19 11965
BCLllA-9571 - U CG AG G U AAAAG AG A U AAAG 20 11966
BCLllA-11411 - GUCGAGGU AAAAG AG A U AAAG 21 11967
BCLllA-11412 - AG U CG AGG U AAAAG AG AU AAAG 22 11968
BCLllA-11413 - GAGUCGAGGUAAAAGAGAUAAAG 23 11969
BCLllA-11414 - AG AG U CG AGG U AAAAG AG AU AAAG 24 11970
BCLllA-11415 - CUUGAACUUGCAGCUCAG 18 11971
BCLllA-11416 - ACUUGAACUUGCAGCUCAG 19 11972
BCLllA-9738 - CACUUGAACUUGCAGCUCAG 20 11973
BCLllA-11417 - GCACUUGAACUUGCAGCUCAG 21 11974
BCLllA-11418 - CGCACUUGAACUUGCAGCUCAG 22 11975
BCLllA-11419 - CCGCACUUGAACUUGCAGCUCAG 23 11976
BCLllA-11420 - UCCGCACUUGAACUUGCAGCUCAG 24 11977
BCLllA-11421 - GAGAAAAACCUCCGAGAG 18 11978
BCLllA-11422 - CGAGAAAAACCUCCGAGAG 19 11979
BCLllA-11423 - ACGAGAAAAACCUCCGAGAG 20 11980
BCLllA-11424 - CACGAGAAAAACCUCCGAGAG 21 11981
BCLllA-11425 - UCACGAGAAAAACCUCCGAGAG 22 11982
BCLllA-11426 - UUCACGAGAAAAACCUCCGAGAG 23 11983
BCLllA-11427 - UUUCACGAGAAAAACCUCCGAGAG 24 11984
BCLllA-11428 - ACU AG AAG CAAAAG CG AG 18 11985 BCLllA-11429 - GACUAGAAGCAAAAGCGAG 19 11986
BCLllA-9739 - GGACUAGAAGCAAAAGCGAG 20 11987
BCLllA-11430 - AGGACUAGAAGCAAAAGCGAG 21 11988
BCLllA-11431 - CAGGACUAGAAGCAAAAGCGAG 22 11989
BCLllA-11432 - GCAGGACUAGAAGCAAAAGCGAG 23 11990
BCLllA-11433 - CGCAGGACUAGAAGCAAAAGCGAG 24 11991
BCLllA-11434 - CGCGUGUGUGGGGGGGAG 18 11992
BCLllA-11435 - CCGCGUGUGUGGGGGGGAG 19 11993
BCLllA-11436 - UCCGCGUGUGUGGGGGGGAG 20 11994
BCLllA-11437 - GUCCGCGUGUGUGGGGGGGAG 21 11995
BCLllA-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 11996
BCLllA-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 11997
BCLllA-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 11998
BCLllA-11441 - GGCCGCGUCUGGCGUCCG 18 11999
BCLllA-11442 - GGGCCGCGUCUGGCGUCCG 19 12000
BCLllA-9574 - GGGGCCGCGUCUGGCGUCCG 20 12001
BCLllA-11443 - GGGGGCCGCGUCUGGCGUCCG 21 12002
BCLllA-11444 - CGGGGGCCGCGUCUGGCGUCCG 22 12003
BCLllA-11445 - CCGGGGGCCGCGUCUGGCGUCCG 23 12004
BCLllA-11446 - CCCGGGGGCCGCGUCUGGCGUCCG 24 12005
BCLllA-11447 - GGACUAGAAGCAAAAGCG 18 12006
BCLllA-11448 - AG G AC U AG AAG CAAAAG CG 19 12007
BCLllA-9748 - CAGGACUAGAAGCAAAAGCG 20 12008
BCLllA-11449 - G C AG G AC U AG AAG CAAAAG CG 21 12009
BCLllA-11450 - CGCAGGACUAGAAGCAAAAGCG 22 12010
BCLllA-11451 - GCGCAGGACUAGAAGCAAAAGCG 23 12011
BCLllA-11452 - CGCGCAGGACUAGAAGCAAAAGCG 24 12012
BCLllA-11453 - AAUAAUCACGAGAGCGCG 18 12013
BCLllA-11454 - UAAUAAUCACGAGAGCGCG 19 12014
BCLllA-11455 - UUAAUAAUCACGAGAGCGCG 20 12015
BCLllA-11456 - AUUAAUAAUCACGAGAGCGCG 21 12016
BCLllA-11457 - UAUUAAUAAUCACGAGAGCGCG 22 12017
BCLllA-11458 - UUAUUAAUAAUCACGAGAGCGCG 23 12018
BCLllA-11459 - AUUAUUAAUAAUCACGAGAGCGCG 24 12019
BCLllA-11460 - UCCUGACGUUCAAGUUCG 18 12020
BCLllA-11461 - CUCCUGACGUUCAAGUUCG 19 12021
BCLllA-11462 - ACUCCUGACGUUCAAGUUCG 20 12022
BCLllA-11463 - GACUCCUGACGUUCAAGUUCG 21 12023
BCLllA-11464 - AGACUCCUGACGUUCAAGUUCG 22 12024
BCLllA-11465 - CAGACUCCUGACGUUCAAGUUCG 23 12025
BCLllA-11466 - CCAGACUCCUGACGUUCAAGUUCG 24 12026
BCLllA-11467 - AGG U AAAAG AG AU AAAGG 18 12027 BCLllA-11468 - G AGG U AAAAG AG AU AAAGG 19 12028
BCLllA-9753 - CGAGGUAAAAGAGAU AAAGG 20 12029
BCLllA-11469 - U CG AGG U AAAAG AG AU AAAGG 21 12030
BCLllA-11470 - GUCGAGGUAAAAGAGAUAAAGG 22 12031
BCLllA-11471 - AG U CG AGG U AAAAG AG AU AAAGG 23 12032
BCLllA-11472 - G AG U CG AGG U AAAAG AG AU AAAGG 24 12033
BCLllA-11473 - CUAGAAGCAAAAGCGAGG 18 12034
BCLllA-11474 - ACUAGAAGCAAAAGCGAGG 19 12035
BCLllA-9755 - GACUAGAAGCAAAAGCGAGG 20 12036
BCLllA-11475 - GGACUAGAAGCAAAAGCGAGG 21 12037
BCLllA-11476 - AGGACUAGAAGCAAAAGCGAGG 22 12038
BCLllA-11477 - CAGGACUAGAAGCAAAAGCGAGG 23 12039
BCLllA-11478 - GCAGGACUAGAAGCAAAAGCGAGG 24 12040
BCLllA-11479 - AGAAGCAAAAGCGAGGGG 18 12041
BCLllA-11480 - U AG A AG C A A A AG CG AG G G G 19 12042
BCLllA-11481 - CUAGAAGCAAAAGCGAGGGG 20 12043
BCLllA-11482 - ACUAGAAGCAAAAGCGAGGGG 21 12044
BCLllA-11483 - GACUAGAAG C A A A AG CG AG G G G 22 12045
BCLllA-11484 - GGACUAGAAGCAAAAGCGAGGGG 23 12046
BCLllA-11485 - AGGACUAGAAGCAAAAGCGAGGGG 24 12047
BCLllA-11486 - GAGUCCGCGUGUGUGGGG 18 12048
BCLllA-11487 - AGAGUCCGCGUGUGUGGGG 19 12049
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 12050
BCLllA-11488 - UUAGAGUCCGCGUGUGUGGGG 21 12051
BCLllA-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 12052
BCLllA-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 12053
BCLllA-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 12054
BCLllA-11492 - AGAGUCCGCGUGUGUGGG 18 12055
BCLllA-11493 - UAGAGUCCGCGUGUGUGGG 19 12056
BCLllA-9769 - UUAGAGUCCGCGUGUGUGGG 20 12057
BCLllA-11494 - UUUAGAGUCCGCGUGUGUGGG 21 12058
BCLllA-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 12059
BCLllA-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 12060
BCLllA-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 12061
BCLllA-11498 - UAGAGUCCGCGUGUGUGG 18 12062
BCLllA-11499 - UUAGAGUCCGCGUGUGUGG 19 12063
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 12064
BCLllA-11500 - UUUUAGAGUCCGCGUGUGUGG 21 12065
BCLllA-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 12066
BCLllA-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 12067
BCLllA-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 12068
BCLllA-11504 - CGCUCGCUGCGGCCACUG 18 12069 BCLllA-11505 - GCGCUCGCUGCGGCCACUG 19 12070
BCLllA-11506 - GGCGCUCGCUGCGGCCACUG 20 12071
BCLllA-11507 - CGGCGCUCGCUGCGGCCACUG 21 12072
BCLllA-11508 - GCGGCGCUCGCUGCGGCCACUG 22 12073
BCLllA-11509 - CGCGGCGCUCGCUGCGGCCACUG 23 12074
BCLllA-11510 - CCGCGGCGCUCGCUGCGGCCACUG 24 12075
BCLllA-11511 - GGAUGUCAAAAGGCACUG 18 12076
BCLllA-11512 - UGGAUGUCAAAAGGCACUG 19 12077
BCLllA-11513 - UUGGAUGUCAAAAGGCACUG 20 12078
BCLllA-11514 - UUUGGAUGUCAAAAGGCACUG 21 12079
BCLllA-11515 - UUUUGGAUGUCAAAAGGCACUG 22 12080
BCLllA-11516 - AUUUUGGAUGUCAAAAGGCACUG 23 12081
BCLllA-11517 - UAUUUUGGAUGUCAAAAGGCACUG 24 12082
BCLllA-11518 - UUUUAGAGUCCGCGUGUG 18 12083
BCLllA-11519 - AUUUUAGAGUCCGCGUGUG 19 12084
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 12085
BCLllA-11520 - UCAUUUUAGAGUCCGCGUGUG 21 12086
BCLllA-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 12087
BCLllA-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 12088
BCLllA-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 12089
BCLllA-11524 - UUAGAGUCCGCGUGUGUG 18 12090
BCLllA-11525 - UUUAGAGUCCGCGUGUGUG 19 12091
BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 12092
BCLllA-11526 - AUUUUAGAGUCCGCGUGUGUG 21 12093
BCLllA-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 12094
BCLllA-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 12095
BCLllA-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 12096
BCLllA-11530 - AAAAAACCCUCAUCCCAU 18 12097
BCLllA-11531 - GAAAAAACCCUCAUCCCAU 19 12098
BCLllA-11532 - GGAAAAAACCCUCAUCCCAU 20 12099
BCLllA-11533 - GGGAAAAAACCCUCAUCCCAU 21 12100
BCLllA-11534 - GGGGAAAAAACCCUCAUCCCAU 22 12101
BCLllA-11535 - GGGGGAAAAAACCCUCAUCCCAU 23 12102
BCLllA-11536 - AGGGGGAAAAAACCCUCAUCCCAU 24 12103
BCLllA-11537 - UAACCCGGCUCUCCCGAU 18 12104
BCLllA-11538 - CUAACCCGGCUCUCCCGAU 19 12105
BCLllA-11539 - UCUAACCCGGCUCUCCCGAU 20 12106
BCLllA-11540 - UUCUAACCCGGCUCUCCCGAU 21 12107
BCLllA-11541 - UUUCUAACCCGGCUCUCCCGAU 22 12108
BCLllA-11542 - CUUUCUAACCCGGCUCUCCCGAU 23 12109
BCLllA-11543 - UCUUUCUAACCCGGCUCUCCCGAU 24 12110
BCLllA-11544 - U U U U CACG AG AAAAACCU 18 12111 BCLllA-11545 - U U U U U CACG AG AAAAACCU 19 12112
BCLllA-11546 - AU U U U U CACG AG AAAAACCU 20 12113
BCLllA-11547 - AAU U U U U CACG AG AAAAACCU 21 12114
BCLllA-11548 - AAAU U U U U CACG AG AAAAACCU 22 12115
BCLllA-11549 - UAAAU U U U U CACG AG AAAAACCU 23 12116
BCLllA-11550 - U UAAAU U U U U CACG AG AAAAACCU 24 12117
BCLllA-11551 - GCACUUGAACUUGCAGCU 18 12118
BCLllA-11552 - CGCACUUGAACUUGCAGCU 19 12119
BCLllA-11553 - CCGCACUUGAACUUGCAGCU 20 12120
BCLllA-11554 - UCCGCACUUGAACUUGCAGCU 21 12121
BCLllA-11555 - GUCCGCACUUGAACUUGCAGCU 22 12122
BCLllA-11556 - CGUCCGCACUUGAACUUGCAGCU 23 12123
BCLllA-11557 - ACGUCCGCACUUGAACUUGCAGCU 24 12124
BCLllA-11558 - CUGAUGAAGAUAUUUUCU 18 12125
BCLllA-11559 - ACUGAUGAAGAUAUUUUCU 19 12126
BCLllA-11560 - CACUGAUGAAGAUAUUUUCU 20 12127
BCLllA-11561 - GCACUGAUGAAGAUAUUUUCU 21 12128
BCLllA-11562 - GGCACUGAUGAAGAUAUUUUCU 22 12129
BCLllA-11563 - AGGCACUGAUGAAGAUAUUUUCU 23 12130
BCLllA-11564 - AAGGCACUGAUGAAGAUAUUUUCU 24 12131
BCLllA-11565 - UGAUGUGUGUCCAUUGGU 18 12132
BCLllA-11566 - CUGAUGUGUGUCCAUUGGU 19 12133
BCLllA-11567 - CCUGAUGUGUGUCCAUUGGU 20 12134
BCLllA-11568 - CCCUGAUGUGUGUCCAUUGGU 21 12135
BCLllA-11569 - CCCCUGAUGUGUGUCCAUUGGU 22 12136
BCLllA-11570 - GCCCCUGAUGUGUGUCCAUUGGU 23 12137
BCLllA-11571 - AGCCCCUGAUGUGUGUCCAUUGGU 24 12138
BCLllA-11572 - AUUUUAGAGUCCGCGUGU 18 12139
BCLllA-11573 - CAUUUUAGAGUCCGCGUGU 19 12140
BCLllA-11574 - UCAUUUUAGAGUCCGCGUGU 20 12141
BCLllA-11575 - UUCAUUUUAGAGUCCGCGUGU 21 12142
BCLllA-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 12143
BCLllA-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 12144
BCLllA-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 12145
BCLllA-11579 - UUUAGAGUCCGCGUGUGU 18 12146
BCLllA-11580 - UUUUAGAGUCCGCGUGUGU 19 12147
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 12148
BCLllA-11581 - CAUUUUAGAGUCCGCGUGUGU 21 12149
BCLllA-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 12150
BCLllA-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 12151
BCLllA-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 12152
BCLllA-11585 - AUUGCCGUGUAUGCACUU 18 12153 BCLllA-11586 - CAUUGCCGUGUAUGCACUU 19 12154
BCLllA-11587 - CCAUUGCCGUGUAUGCACUU 20 12155
BCLllA-11588 - ACCAUUGCCGUGUAUGCACUU 21 12156
BCLllA-11589 - AACCAUUGCCGUGUAUGCACUU 22 12157
BCLllA-11590 - GAACCAUUGCCGUGUAUGCACUU 23 12158
BCLllA-11591 - GGAACCAUUGCCGUGUAUGCACUU 24 12159
Table 16D provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the fourth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 16D
Figure imgf000436_0001
BCLllA-11607 + ACUGGCGGGGCGGGGGGGGAG 21 12177
BCLllA-11608 + AACUGGCGGGGCGGGGGGGGAG 22 12178
BCLllA-11609 + AAACUGGCGGGGCGGGGGGGGAG 23 12179
BCLllA-11610 + AAAACUGGCGGGGCGGGGGGGGAG 24 12180
BCLllA-11611 + AGGGAGCGCACGGCAACG 18 12181
BCLllA-11612 + GAGGGAGCGCACGGCAACG 19 12182
BCLllA-10155 + GGAGGGAGCGCACGGCAACG 20 12183
BCLllA-11613 + GGGAGGGAGCGCACGGCAACG 21 12184
BCLllA-11614 + UGGGAGGGAGCGCACGGCAACG 22 12185
BCLllA-11615 + GUGGGAGGGAGCGCACGGCAACG 23 12186
BCLllA-11616 + GGUGGGAGGGAGCGCACGGCAACG 24 12187
BCLllA-11617 + CCCCCCCAUUUUCUUACG 18 12188
BCLllA-11618 + ACCCCCCCAUUU UCUUACG 19 12189
BCLllA-11619 + UACCCCCCCAUU UUCUUACG 20 12190
BCLllA-11620 + CUACCCCCCCAUUUUCU UACG 21 12191
BCLllA-11621 + CCUACCCCCCCAUUUUCUUACG 22 12192
BCLllA-11622 + CCCUACCCCCCCAUU UUCUUACG 23 12193
BCLllA-11623 + UCCCUACCCCCCCAU UU UCUUACG 24 12194
BCLllA-11624 + GGGCGGAGGGAAGCCAGG 18 12195
BCLllA-11625 + CGGGCGGAGGGAAGCCAGG 19 12196
BCLllA-11626 + GCGGGCGGAGGGAAGCCAGG 20 12197
BCLllA-11627 + CGCGGGCGGAGGGAAGCCAGG 21 12198
BCLllA-11628 + GCGCGGGCGGAGGGAAGCCAGG 22 12199
BCLllA-11629 + AGCGCGGGCGGAGGGAAGCCAGG 23 12200
BCLllA-11630 + AAGCGCGGGCGGAGGGAAGCCAGG 24 12201
BCLllA-11631 + CGGAAAGGAGGAAAGAGG 18 12202
BCLllA-11632 + GCGGAAAGGAGGAAAGAGG 19 12203
BCLllA-10187 + GGCGGAAAGGAGGAAAGAGG 20 12204
BCLllA-11633 + CGGCGGAAAGGAGGAAAGAGG 21 12205
BCLllA-11634 + GCGGCGGAAAGGAGGAAAGAGG 22 12206
BCLllA-11635 + AGCGGCGGAAAGGAGGAAAGAGG 23 12207
BCLllA-11636 + AAGCGGCGGAAAGGAGGAAAGAGG 24 12208
BCLllA-11637 + AAACUGGCGGGGCGGGGG 18 12209
BCLllA-11638 + AAAACUGGCGGGGCGGGGG 19 12210
BCLllA-10209 + CAAAACUGGCGGGGCGGGGG 20 12211
BCLllA-11639 + GCAAAACUGGCGGGGCGGGGG 21 12212
BCLllA-11640 + UGCAAAACUGGCGGGGCGGGGG 22 12213
BCLllA-11641 + U UGCAAAACUGGCGGGGCGGGGG 23 12214
BCLllA-11642 + UUUGCAAAACUGGCGGGGCGGGGG 24 12215
BCLllA-11643 + CCACCCCCAGGU UUGCAU 18 12216
BCLllA-11644 + CCCACCCCCAGGUUUGCAU 19 12217
BCLllA-11645 + UCCCACCCCCAGGUUUGCAU 20 12218 BCLllA-11646 + CUCCCACCCCCAGGUUUGCAU 21 12219
BCLllA-11647 + GCUCCCACCCCCAGGUUUGCAU 22 12220
BCLllA-11648 + AGCUCCCACCCCCAGGU UUGCAU 23 12221
BCLllA-11649 + CAGCUCCCACCCCCAGGUUUGCAU 24 12222
BCLllA-11650 + GCCUAAGUUUGGAGGGCU 18 12223
BCLllA-11651 + AGCCUAAGUUUGGAGGGCU 19 12224
BCLllA-11652 + CAGCCUAAGUUUGGAGGGCU 20 12225
BCLllA-11653 + CCAGCCUAAGUUUGGAGGGCU 21 12226
BCLllA-11654 + UCCAGCCUAAGUUUGGAGGGCU 22 12227
BCLllA-11655 + AUCCAGCCUAAGU UUGGAGGGCU 23 12228
BCLllA-11656 + AAUCCAGCCUAAGUUUGGAGGGCU 24 12229
BCLllA-11657 + CCACUUUCUCACUAUUGU 18 12230
BCLllA-11658 + GCCACU UUCUCACUAUUGU 19 12231
BCLllA-10251 + UGCCACUUUCUCACUAU UGU 20 12232
BCLllA-11659 + GUGCCACU UUCUCACUAUUGU 21 12233
BCLllA-11660 + AGUGCCACUU UCUCACUAUUGU 22 12234
BCLllA-11661 + CAGUGCCACUUUCUCACUAUUGU 23 12235
BCLllA-11662 + ACAGUGCCACUUUCUCACUAUUGU 24 12236
BCLllA-11663 - UUAUUUCUCUUUUCGAAA 18 12237
BCLllA-11664 - U UUAUUUCUCUUUUCGAAA 19 12238
BCLllA-10027 - CUUUAUUUCUCUUUUCGAAA 20 12239
BCLllA-11665 - GCUU UAUUUCUCUU UUCGAAA 21 12240
BCLllA-11666 - CGCUUUAUU UCUCUUU UCGAAA 22 12241
BCLllA-11667 - CCGCUUUAUUUCUCUU UUCGAAA 23 12242
BCLllA-11668 - GCCGCUU UAUUUCUCUUUUCGAAA 24 12243
BCLllA-11669 - CGGCGGCGGGGAGGGGAA 18 12244
BCLllA-11670 - GCGGCGGCGGGGAGGGGAA 19 12245
BCLllA-11671 - GGCGGCGGCGGGGAGGGGAA 20 12246
BCLllA-11672 - CGGCGGCGGCGGGGAGGGGAA 21 12247
BCLllA-11673 - GCGGCGGCGGCGGGGAGGGGAA 22 12248
BCLllA-11674 - CGCGGCGGCGGCGGGGAGGGGAA 23 12249
BCLllA-11675 - GCGCGGCGGCGGCGGGGAGGGGAA 24 12250
BCLllA-11676 - UGGGGGGGUAGGGAGGGA 18 12251
BCLllA-11677 - AUGGGGGGGUAGGGAGGGA 19 12252
BCLllA-11678 - AAUGGGGGGGUAGGGAGGGA 20 12253
BCLllA-11679 - AAAUGGGGGGGUAGGGAGGGA 21 12254
BCLllA-11680 - AAAAUGGGGGGGUAGGGAGGGA 22 12255
BCLllA-11681 - GAAAAUGGGGGGGUAGGGAGGGA 23 12256
BCLllA-11682 - AGAAAAUGGGGGGGUAGGGAGGGA 24 12257
BCLllA-11683 - AAAAUGGGGGGGUAGGGA 18 12258
BCLllA-11684 - GAAAAUGGGGGGGUAGGGA 19 12259
BCLllA-10049 - AGAAAAUGGGGGGGUAGGGA 20 12260 BCLllA-11685 - AAGAAAAUGGGGGGGUAGGGA 21 12261
BCLllA-11686 - UAAGAAAAUGGGGGGGUAGGGA 22 12262
BCLllA-11687 - GU AAGAAAAUGGGGGGGUAGGGA 23 12263
BCLllA-11688 - CGUAAGAAAAUGGGGGGGUAGGGA 24 12264
BCLllA-11689 - AAGGGGCCCCCGGCGCUC 18 12265
BCLllA-11690 - AAAGGGGCCCCCGGCGCUC 19 12266
BCLllA-11691 - GAAAGGGGCCCCCGGCGCUC 20 12267
BCLllA-11692 - GGAAAGGGGCCCCCGGCGCUC 21 12268
BCLllA-11693 - UGGAAAGGGGCCCCCGGCGCUC 22 12269
BCLllA-11694 - GUGGAAAGGGGCCCCCGGCGCUC 23 12270
BCLllA-11695 - UGUGGAAAGGGGCCCCCGGCGCUC 24 12271
BCLllA-11696 - CUUUUGUUCCGGCCAGAG 18 12272
BCLllA-11697 - CCUUUUGUUCCGGCCAGAG 19 12273
BCLllA-11698 - GCCUUUUGUUCCGGCCAGAG 20 12274
BCLllA-11699 - CGCCUUUUGUUCCGGCCAGAG 21 12275
BCLllA-11700 - CCGCCUUUUGUUCCGGCCAGAG 22 12276
BCLllA-11701 - GCCGCCUUUUGUUCCGGCCAGAG 23 12277
BCLllA-11702 - UGCCGCCUUUUGUUCCGGCCAGAG 24 12278
BCLllA-11703 - GUGGGUGUGCGUACGGAG 18 12279
BCLllA-11704 - AGUGGGUGUGCGUACGGAG 19 12280
BCLllA-11705 - AAGUGGGUGUGCGUACGGAG 20 12281
BCLllA-11706 - GAAGUGGGUGUGCGUACGGAG 21 12282
BCLllA-11707 - GGAAGUGGGUGUGCGUACGGAG 22 12283
BCLllA-11708 - GGGAAGUGGGUGUGCGUACGGAG 23 12284
BCLllA-11709 - GGGGAAGUGGGUGUGCGUACGGAG 24 12285
BCLllA-11710 - CCGGCGCUCCUGAGUCCG 18 12286
BCLllA-11711 - CCCGGCGCUCCUGAGUCCG 19 12287
BCLllA-10172 - CCCCGGCGCUCCUGAGUCCG 20 12288
BCLllA-11712 - CCCCCGGCGCUCCUGAGUCCG 21 12289
BCLllA-11713 - GCCCCCGGCGCUCCUGAGUCCG 22 12290
BCLllA-11714 - GGCCCCCGGCGCUCCUGAGUCCG 23 12291
BCLllA-11715 - GGGCCCCCGGCGCUCCUGAGUCCG 24 12292
BCLllA-11716 - CAGCCCUCCAAACUUAGG 18 12293
BCLllA-11717 - GCAGCCCUCCAAACUUAGG 19 12294
BCLllA-11718 - CGCAGCCCUCCAAACUUAGG 20 12295
BCLllA-11719 - CCGCAGCCCUCCAAACUUAGG 21 12296
BCLllA-11720 - CCCGCAGCCCUCCAAACUUAGG 22 12297
BCLllA-11721 - ACCCGCAGCCCUCCAAACUUAGG 23 12298
BCLllA-11722 - GACCCGCAGCCCUCCAAACUUAGG 24 12299
BCLllA-11723 - CUCACCGUAAGAAAAUGG 18 12300
BCLllA-11724 - ACUCACCGUAAGAAAAUGG 19 12301
BCLllA-10214 - CACU CACCG U AAG AAAAUGG 20 12302 BCLllA-11725 - CCACUCACCGUAAGAAAAUGG 21 12303
BCLllA-11726 - CCCACUCACCGUAAGAAAAUGG 22 12304
BCLllA-11727 - UCCCACUCACCGUAAGAAAAUGG 23 12305
BCLllA-11728 - U UCCCACUCACCGUAAGAAAAUGG 24 12306
BCLllA-11729 - GAGGCUCAGCUCUCAACU 18 12307
BCLllA-11730 - GGAGGCUCAGCUCUCAACU 19 12308
BCLllA-11731 - UGGAGGCUCAGCUCUCAACU 20 12309
BCLllA-11732 - UUGGAGGCUCAGCUCUCAACU 21 12310
BCLllA-11733 - CUUGGAGGCUCAGCUCUCAACU 22 12311
BCLllA-11734 - ACU UGGAGGCUCAGCUCUCAACU 23 12312
BCLllA-11735 - AACUUGGAGGCUCAGCUCUCAACU 24 12313
BCLllA-11736 - CAACUCACAUGCAAACCU 18 12314
BCLllA-11737 - ACAACUCACAUGCAAACCU 19 12315
BCLllA-10235 - AACAACUCACAUGCAAACCU 20 12316
BCLllA-11738 - GAACAACUCACAUGCAAACCU 21 12317
BCLllA-11739 - CGAACAACUCACAUGCAAACCU 22 12318
BCLllA-11740 - GCGAACAACUCACAUGCAAACCU 23 12319
BCLllA-11741 - UGCGAACAACUCACAUGCAAACCU 24 12320
BCLllA-10351 - UUGAAUAAUCUUUCAUUU 18 12321
BCLllA-10352 - UUUGAAUAAUCUUUCAUUU 19 12322
BCLllA-10353 - U UUUGAAUAAUCUUUCAUUU 20 12323
BCLllA-10354 - U UUUUGAAUAAUCUUUCAUUU 21 12324
BCLllA-10355 - U UUUUUGAAUAAUCUU UCAUUU 22 12325
BCLllA-10356 - CUU UUUUGAAUAAUCU UUCAUUU 23 12326
BCLllA-10357 - UCU UUUUUGAAUAAUCUUUCAUUU 24 12327
BCLllA-11742 - GCUCUAUUUUUUUCUU UU 18 12328
BCLllA-11743 - CGCUCUAU UUUUUUCUUUU 19 12329
BCLllA-11744 - UCGCUCUAUUUUUU UCUUUU 20 12330
BCLllA-11745 - CUCGCUCUAUUUUUUUCUUUU 21 12331
BCLllA-11746 - UCUCGCUCUAUUUUUU UCUUUU 22 12332
BCLllA-11747 - CUCUCGCUCUAUUUUU UUCUUUU 23 12333
BCLllA-11748 - ACUCUCGCUCUAUU UUUUUCUUUU 24 12334
Table 16E provides exemplary targeting domains for knocking down the BCL11A gene selected according to the fifth tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS, and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 16E
Figure imgf000441_0001
BCLllA-11783 + CCAGGAGCCCGCGCGGCCUGGAAA 24 12369
BCLllA-10371 + ACACACGCGGACUCUAAA 18 12370
BCLllA-10372 + CACACACGCGGACUCUAAA 19 12371
BCLllA-10373 + CCACACACGCGGACUCUAAA 20 12372
BCLllA-10374 + CCCACACACGCGGACUCUAAA 21 12373
BCLllA-10375 + CCCCACACACGCGGACUCUAAA 22 12374
BCLllA-10376 + CCCCCACACACGCGGACUCUAAA 23 12375
BCLllA-10377 + CCCCCCACACACGCGGACUCUAAA 24 12376
BCLllA-11784 + AUUGCAUUCCUUUUCGAA 18 12377
BCLllA-11785 + CAUUGCAUUCCUUUUCGAA 19 12378
BCLllA-11786 + UCAUUGCAUUCCUUUUCGAA 20 12379
BCLllA-11787 + AUCAUUGCAUUCCUUU UCGAA 21 12380
BCLllA-11788 + AAUCAUUGCAUUCCUUUUCGAA 22 12381
BCLllA-11789 + GAAUCAUUGCAUUCCUUUUCGAA 23 12382
BCLllA-11790 + GGAAUCAUUGCAUUCCU UUUCGAA 24 12383
BCLllA-11791 + AGAAAUAAAGCGGCGGAA 18 12384
BCLllA-11792 + GAG AAA U A A AG CG G CG G A A 19 12385
BCLllA-10031 + AGAGAAAUAAAGCGGCGGAA 20 12386
BCLllA-11793 + AAGAGAAAUAAAGCGGCGGAA 21 12387
BCLllA-11794 + A A AG AG A A A U A A AG CG G CG G A A 22 12388
BCLllA-11795 + A A A AG AG A A A U A A AG CG G CG G A A 23 12389
BCLllA-11796 + GAAAAGAGAAAUAAAGCGGCGGAA 24 12390
BCLllA-11797 + CCCGAGGAGAGGACAGCA 18 12391
BCLllA-11798 + GCCCGAGGAGAGGACAGCA 19 12392
BCLllA-11799 + UGCCCGAGGAGAGGACAGCA 20 12393
BCLllA-11800 + UUGCCCGAGGAGAGGACAGCA 21 12394
BCLllA-11801 + UUUGCCCGAGGAGAGGACAGCA 22 12395
BCLllA-11802 + CU UUGCCCGAGGAGAGGACAGCA 23 12396
BCLllA-11803 + ACUUUGCCCGAGGAGAGGACAGCA 24 12397
BCLllA-11804 + CCAAGUUACAGCUCCGCA 18 12398
BCLllA-11805 + UCCAAGUUACAGCUCCGCA 19 12399
BCLllA-11806 + CUCCAAGUUACAGCUCCGCA 20 12400
BCLllA-11807 + CCUCCAAGUUACAGCUCCGCA 21 12401
BCLllA-11808 + GCCUCCAAGUUACAGCUCCGCA 22 12402
BCLllA-11809 + AGCCUCCAAGU UACAGCUCCGCA 23 12403
BCLllA-11810 + GAGCCUCCAAGUUACAGCUCCGCA 24 12404
BCLllA-11811 + GAG CCGG CACAAAAGG CA 18 12405
BCLllA-11812 + GGAGCCGGCA C A A A AG G C A 19 12406
BCLllA-11813 + AG GAG CCGG CAC AAAAG G C A 20 12407
BCLllA-11814 + GAGGAGCCGGCACAAAAGGCA 21 12408
BCLllA-11815 + CG AG G AG CCGG C ACAAAAG G C A 22 12409
BCLllA-11816 + GCGAGGAGCCGGCACAAAAGGCA 23 12410 BCLllA-11817 + CG CG AG G AG CCG G C ACA AAAGG CA 24 12411
BCLllA-11818 + AAAUAGAGCGAGAGUGCA 18 12412
BCLllA-11819 + AAAAUAGAGCGAGAGUGCA 19 12413
BCLllA-11820 + AAAAAUAGAGCGAGAGUGCA 20 12414
BCLllA-11821 + AAAAAAUAGAGCGAGAGUGCA 21 12415
BCLllA-11822 + AAAAAAAU AG AGCGAG AG UGCA 22 12416
BCLllA-11823 + G A A A A A A A UAGAGCGAGAGUGCA 23 12417
BCLllA-11824 + AGAAAAAAAUAGAGCGAGAGUGCA 24 12418
BCLllA-11825 + CCGCGCGGCCUGGAAAGA 18 12419
BCLllA-11826 + CCCGCGCGGCCUGGAAAGA 19 12420
BCLllA-10040 + GCCCGCGCGGCCUGGAAAGA 20 12421
BCLllA-11827 + AGCCCGCGCGGCCUGGAAAGA 21 12422
BCLllA-11828 + GAGCCCGCGCGGCCUGGAAAGA 22 12423
BCLllA-11829 + GGAGCCCGCGCGGCCUGGAAAGA 23 12424
BCLllA-11830 + AGGAGCCCGCGCGGCCUGGAAAGA 24 12425
BCLllA-11831 + AAAAAAGAAAAAAAUAGA 18 12426
BCLllA-11832 + CAAAAAAGAAAAAAAUAGA 19 12427
BCLllA-11833 + U CAAAAAAG AAAAAAAU AG A 20 12428
BCLllA-11834 + UU CAAAAAAGAAAAAAAUAGA 21 12429
BCLllA-11835 + A U U CAAAAAAG A A A A AAA U AG A 22 12430
BCLllA-11836 + U A U U CAAAAAAG A A A A AAA U AG A 23 12431
BCLllA-11837 + U U AU U CAAAAAAGAAAAAAAUAGA 24 12432
BCLllA-11838 + CAGCUCCGCAGCGGGCGA 18 12433
BCLllA-11839 + ACAGCUCCGCAGCGGGCGA 19 12434
BCLllA-10044 + UACAGCUCCGCAGCGGGCGA 20 12435
BCLllA-11840 + U UACAGCUCCGCAGCGGGCGA 21 12436
BCLllA-11841 + GUUACAGCUCCGCAGCGGGCGA 22 12437
BCLllA-11842 + AGUUACAGCUCCGCAGCGGGCGA 23 12438
BCLllA-11843 + AAGUUACAGCUCCGCAGCGGGCGA 24 12439
BCLllA-11844 + GGAAACUUUGCCCGAGGA 18 12440
BCLllA-11845 + GGGAAACUUUGCCCGAGGA 19 12441
BCLllA-11846 + CGGGAAACUUUGCCCGAGGA 20 12442
BCLllA-11847 + UCGGGAAACUUUGCCCGAGGA 21 12443
BCLllA-11848 + CUCGGGAAACUU UGCCCGAGGA 22 12444
BCLllA-11849 + GCUCGGGAAACUU UGCCCGAGGA 23 12445
BCLllA-11850 + CGCUCGGGAAACUUUGCCCGAGGA 24 12446
BCLllA-11851 + AAGCGGCGGAAAGGAGGA 18 12447
BCLllA-11852 + AAAGCGGCGGAAAGGAGGA 19 12448
BCLllA-11853 + UAAAGCGGCGGAAAGGAGGA 20 12449
BCLllA-11854 + AUAAAGCGGCGGAAAGGAGGA 21 12450
BCLllA-11855 + AAUAAAGCGGCGGAAAGGAGGA 22 12451
BCLllA-11856 + AAA U A A AG CG G CG G A A AG G AG G A 23 12452 BCLllA-11857 + GAAAUAAAGCGGCGGAAAGGAGGA 24 12453
BCLllA-11858 + GAGAAAUAAAGCGGCGGA 18 12454
BCLllA-11859 + AGAGAAAUAAAGCGGCGGA 19 12455
BCLllA-11860 + AAGAGAAAUAAAGCGGCGGA 20 12456
BCLllA-11861 + AAAGAGAAAUAAAGCGGCGGA 21 12457
BCLllA-11862 + AAAAGAGAAAUAAAGCGGCGGA 22 12458
BCLllA-11863 + G A A A AG AG A A A U A A AG CG G CG G A 23 12459
BCLllA-11864 + CGAAAAGAGAAAUAAAGCGGCGGA 24 12460
BCLllA-11865 + UGGGGAAGCGCGGGCGGA 18 12461
BCLllA-11866 + CUGGGGAAGCGCGGGCGGA 19 12462
BCLllA-10048 + GCUGGGGAAGCGCGGGCGGA 20 12463
BCLllA-11867 + GGCUGGGGAAGCGCGGGCGGA 21 12464
BCLllA-11868 + GGGCUGGGGAAGCGCGGGCGGA 22 12465
BCLllA-11869 + CGGGCUGGGGAAGCGCGGGCGGA 23 12466
BCLllA-11870 + CCGGGCUGGGGAAGCGCGGGCGGA 24 12467
BCLllA-11871 + CCAAGGCCGAGCCAGGGA 18 12468
BCLllA-11872 + CCCAAGGCCGAGCCAGGGA 19 12469
BCLllA-11873 + CCCCAAGGCCGAGCCAGGGA 20 12470
BCLllA-11874 + CCCCCAAGGCCGAGCCAGGGA 21 12471
BCLllA-11875 + GCCCCCAAGGCCGAGCCAGGGA 22 12472
BCLllA-11876 + CGCCCCCAAGGCCGAGCCAGGGA 23 12473
BCLllA-11877 + GCGCCCCCAAGGCCGAGCCAGGGA 24 12474
BCLllA-11878 + CGGCCUGGAAAGAGGGGA 18 12475
BCLllA-11879 + GCGGCCUGGAAAGAGGGGA 19 12476
BCLllA-11880 + CGCGGCCUGGAAAGAGGGGA 20 12477
BCLllA-11881 + GCGCGGCCUGGAAAGAGGGGA 21 12478
BCLllA-11882 + CGCGCGGCCUGGAAAGAGGGGA 22 12479
BCLllA-11883 + CCGCGCGGCCUGGAAAGAGGGGA 23 12480
BCLllA-11884 + CCCGCGCGGCCUGGAAAGAGGGGA 24 12481
BCLllA-11885 + UGGCGGGGCGGGGGGGGA 18 12482
BCLllA-11886 + CUGGCGGGGCGGGGGGGGA 19 12483
BCLllA-11887 + ACUGGCGGGGCGGGGGGGGA 20 12484
BCLllA-11888 + AACUGGCGGGGCGGGGGGGGA 21 12485
BCLllA-11889 + AAACUGGCGGGGCGGGGGGGGA 22 12486
BCLllA-11890 + AAAACUGGCGGGGCGGGGGGGGA 23 12487
BCLllA-11891 + CAAAACUGGCGGGGCGGGGGGGGA 24 12488
BCLllA-11892 + GGGCGAGGGGAGGUGGGA 18 12489
BCLllA-11893 + CGGGCGAGGGGAGGUGGGA 19 12490
BCLllA-10052 + GCGGGCGAGGGGAGGUGGGA 20 12491
BCLllA-11894 + AGCGGGCGAGGGGAGGUGGGA 21 12492
BCLllA-11895 + CAGCGGGCGAGGGGAGGUGGGA 22 12493
BCLllA-11896 + GCAGCGGGCGAGGGGAGGUGGGA 23 12494 BCLllA-11897 + CGCAGCGGGCGAGGGGAGGUGGGA 24 12495
BCLllA-11898 + GAGCCCGCGCGGCCUGGA 18 12496
BCLllA-11899 + GGAGCCCGCGCGGCCUGGA 19 12497
BCLllA-11900 + AGGAGCCCGCGCGGCCUGGA 20 12498
BCLllA-11901 + CAGGAGCCCGCGCGGCCUGGA 21 12499
BCLllA-11902 + CCAGGAGCCCGCGCGGCCUGGA 22 12500
BCLllA-11903 + UCCAGGAGCCCGCGCGGCCUGGA 23 12501
BCLllA-11904 + CUCCAGGAGCCCGCGCGGCCUGGA 24 12502
BCLllA-11905 + CCCAUU UUCUUACGGUGA 18 12503
BCLllA-11906 + CCCCAUU UUCUUACGGUGA 19 12504
BCLllA-11907 + CCCCCAUUU UCUUACGGUGA 20 12505
BCLllA-11908 + CCCCCCAUUUUCUUACGGUGA 21 12506
BCLllA-11909 + CCCCCCCAUUUUCUUACGGUGA 22 12507
BCLllA-11910 + ACCCCCCCAUUU UCUUACGGUGA 23 12508
BCLllA-11911 + UACCCCCCCAUU UUCUUACGGUGA 24 12509
BCLllA-11912 + GAGGGAGCGCACGGCAAC 18 12510
BCLllA-11913 + GGAGGGAGCGCACGGCAAC 19 12511
BCLllA-11914 + GGGAGGGAGCGCACGGCAAC 20 12512
BCLllA-11915 + UGGGAGGGAGCGCACGGCAAC 21 12513
BCLllA-11916 + GUGGGAGGGAGCGCACGGCAAC 22 12514
BCLllA-11917 + GGUGGGAGGGAGCGCACGGCAAC 23 12515
BCLllA-11918 + AGGUGGGAGGGAGCGCACGGCAAC 24 12516
BCLllA-10612 + CUGCUCCCCCCCACACAC 18 12517
BCLllA-10613 + CCUGCUCCCCCCCACACAC 19 12518
BCLllA-10614 + CCCUGCUCCCCCCCACACAC 20 12519
BCLllA-10615 + GCCCUGCUCCCCCCCACACAC 21 12520
BCLllA-10616 + CGCCCUGCUCCCCCCCACACAC 22 12521
BCLllA-10617 + GCGCCCUGCUCCCCCCCACACAC 23 12522
BCLllA-10618 + UGCGCCCUGCUCCCCCCCACACAC 24 12523
BCLllA-11919 + AAUAGAGCGAGAGUGCAC 18 12524
BCLllA-11920 + AAAUAGAGCGAGAGUGCAC 19 12525
BCLllA-10059 + AAAAUAGAGCGAGAGUGCAC 20 12526
BCLllA-11921 + AAAAAUAGAGCGAGAGUGCAC 21 12527
BCLllA-11922 + AAAAAAUAGAGCGAGAGUGCAC 22 12528
BCLllA-11923 + AAAAAAAU AG AG CG AG AG UG CAC 23 12529
BCLllA-11924 + GAAAAAAAUAGAGCGAGAGUGCAC 24 12530
BCLllA-11925 + ACAGCAAAGAAAAAUCAC 18 12531
BCLllA-11926 + GACAGCAAAGAAAAAUCAC 19 12532
BCLllA-11927 + G G AC AG CAAAG AAAAAU CAC 20 12533
BCLllA-11928 + AGGACAGCAAAGAAAAAUCAC 21 12534
BCLllA-11929 + GAGGACAG CAAAG AAAAAU CAC 22 12535
BCLllA-11930 + AG AG G AC AG CAAAG AAAAAU CAC 23 12536 BCLllA-11931 + GAGAGGACAGCAAAGAAAAAUCAC 24 12537
BCLllA-11932 + CAAGGCCGAGCCAGGGAC 18 12538
BCLllA-11933 + CCAAGGCCGAGCCAGGGAC 19 12539
BCLllA-10063 + CCCAAGGCCGAGCCAGGGAC 20 12540
BCLllA-11934 + CCCCAAGGCCGAGCCAGGGAC 21 12541
BCLllA-11935 + CCCCCAAGGCCGAGCCAGGGAC 22 12542
BCLllA-11936 + GCCCCCAAGGCCGAGCCAGGGAC 23 12543
BCLllA-11937 + CGCCCCCAAGGCCGAGCCAGGGAC 24 12544
BCLllA-11938 + GGCCUGGAAAGAGGGGAC 18 12545
BCLllA-11939 + CGGCCUGGAAAGAGGGGAC 19 12546
BCLllA-10064 + GCGGCCUGGAAAGAGGGGAC 20 12547
BCLllA-11940 + CGCGGCCUGGAAAGAGGGGAC 21 12548
BCLllA-11941 + GCGCGGCCUGGAAAGAGGGGAC 22 12549
BCLllA-11942 + CGCGCGGCCUGGAAAGAGGGGAC 23 12550
BCLllA-11943 + CCGCGCGGCCUGGAAAGAGGGGAC 24 12551
BCLllA-11944 + AUAGAGCGAGAGUGCACC 18 12552
BCLllA-11945 + AAUAGAGCGAGAGUGCACC 19 12553
BCLllA-10067 + AAAUAGAGCGAGAGUGCACC 20 12554
BCLllA-11946 + AAAAUAGAGCGAGAGUGCACC 21 12555
BCLllA-11947 + AAAAAUAGAGCGAGAGUGCACC 22 12556
BCLllA-11948 + AAAAAAUAGAGCGAGAGUGCACC 23 12557
BCLllA-11949 + AAAAAAAUAGAGCGAGAGUGCACC 24 12558
BCLllA-11950 + AAGGCCGAGCCAGGGACC 18 12559
BCLllA-11951 + CAAGGCCGAGCCAGGGACC 19 12560
BCLllA-10068 + CCAAGGCCGAGCCAGGGACC 20 12561
BCLllA-11952 + CCCAAGGCCGAGCCAGGGACC 21 12562
BCLllA-11953 + CCCCAAGGCCGAGCCAGGGACC 22 12563
BCLllA-11954 + CCCCCAAGGCCGAGCCAGGGACC 23 12564
BCLllA-11955 + GCCCCCAAGGCCGAGCCAGGGACC 24 12565
BCLllA-11956 + GCCUGGAAAGAGGGGACC 18 12566
BCLllA-11957 + GGCCUGGAAAGAGGGGACC 19 12567
BCLllA-10069 + CGGCCUGGAAAGAGGGGACC 20 12568
BCLllA-11958 + GCGGCCUGGAAAGAGGGGACC 21 12569
BCLllA-11959 + CGCGGCCUGGAAAGAGGGGACC 22 12570
BCLllA-11960 + GCGCGGCCUGGAAAGAGGGGACC 23 12571
BCLllA-11961 + CGCGCGGCCUGGAAAGAGGGGACC 24 12572
BCLllA-11962 + CCCGCUGCACACUUGACC 18 12573
BCLllA-11963 + UCCCGCUGCACACU UGACC 19 12574
BCLllA-11964 + CUCCCGCUGCACACU UGACC 20 12575
BCLllA-11965 + CCUCCCGCUGCACACUUGACC 21 12576
BCLllA-11966 + UCCUCCCGCUGCACACU UGACC 22 12577
BCLllA-11967 + U UCCUCCCGCUGCACACUUGACC 23 12578 BCLllA-11968 + U UUCCUCCCGCUGCACACUUGACC 24 12579
BCLllA-11969 + CGGCGCAGGCCGGGGCCC 18 12580
BCLllA-11970 + GCGGCGCAGGCCGGGGCCC 19 12581
BCLllA-11971 + GGCGGCGCAGGCCGGGGCCC 20 12582
BCLllA-11972 + AGGCGGCGCAGGCCGGGGCCC 21 12583
BCLllA-11973 + CAGGCGGCGCAGGCCGGGGCCC 22 12584
BCLllA-11974 + GCAGGCGGCGCAGGCCGGGGCCC 23 12585
BCLllA-11975 + GGCAGGCGGCGCAGGCCGGGGCCC 24 12586
BCLllA-11976 + GCUCGGGAAACUU UGCCC 18 12587
BCLllA-11977 + CGCUCGGGAAACUUUGCCC 19 12588
BCLllA-11978 + GCGCUCGGGAAACUUUGCCC 20 12589
BCLllA-11979 + UGCGCUCGGGAAACUUUGCCC 21 12590
BCLllA-11980 + CUGCGCUCGGGAAACUUUGCCC 22 12591
BCLllA-11981 + GCUGCGCUCGGGAAACUUUGCCC 23 12592
BCLllA-11982 + GGCUGCGCUCGGGAAACUUUGCCC 24 12593
BCLllA-11983 + UCUCACCUCUUU UCUCCC 18 12594
BCLllA-11984 + GUCUCACCUCUUUUCUCCC 19 12595
BCLllA-10081 + AGUCUCACCUCUUUUCUCCC 20 12596
BCLllA-11985 + CAGUCUCACCUCUUUUCUCCC 21 12597
BCLllA-11986 + CCAGUCUCACCUCUUUUCUCCC 22 12598
BCLllA-11987 + GCCAGUCUCACCUCUUU UCUCCC 23 12599
BCLllA-11988 + AGCCAGUCUCACCUCUUUUCUCCC 24 12600
BCLllA-11989 + GGGGCCGAAGU A A A AG C C 18 12601
BCLllA-11990 + AGGGGCCGAAGUAAAAGCC 19 12602
BCLllA-11991 + CAGGGGCCGAAGUAAAAGCC 20 12603
BCLllA-11992 + CCAGGGGCCGAAGUAAAAGCC 21 12604
BCLllA-11993 + GCCAGGGGCCGAAGUAAAAGCC 22 12605
BCLllA-11994 + CGCCAGGGGCCGAAGUAAAAGCC 23 12606
BCLllA-11995 + ACGCCAGGGGCCGAAGUAAAAGCC 24 12607
BCLllA-11996 + CACCGGGAGGCUGCAGCC 18 12608
BCLllA-11997 + GCACCGGGAGGCUGCAGCC 19 12609
BCLllA-11998 + UGCACCGGGAGGCUGCAGCC 20 12610
BCLllA-11999 + GUGCACCGGGAGGCUGCAGCC 21 12611
BCLllA-12000 + AGUGCACCGGGAGGCUGCAGCC 22 12612
BCLllA-12001 + GAGUGCACCGGGAGGCUGCAGCC 23 12613
BCLllA-12002 + AGAGUGCACCGGGAGGCUGCAGCC 24 12614
BCLllA-12003 + CGCCCCCAAGGCCGAGCC 18 12615
BCLllA-12004 + GCGCCCCCAAGGCCGAGCC 19 12616
BCLllA-10085 + GGCGCCCCCAAGGCCGAGCC 20 12617
BCLllA-12005 + GGGCGCCCCCAAGGCCGAGCC 21 12618
BCLllA-12006 + AGGGCGCCCCCAAGGCCGAGCC 22 12619
BCLllA-12007 + GAGGGCGCCCCCAAGGCCGAGCC 23 12620 BCLllA-12008 + CGAGGGCGCCCCCAAGGCCGAGCC 24 12621
BCLllA-12009 + UCCCCGCGUGUGGACGCC 18 12622
BCLllA-12010 + CUCCCCGCGUGUGGACGCC 19 12623
BCLllA-10086 + GCUCCCCGCGUGUGGACGCC 20 12624
BCLllA-12011 + CGCUCCCCGCGUGUGGACGCC 21 12625
BCLllA-12012 + UCGCUCCCCGCGUGUGGACGCC 22 12626
BCLllA-12013 + CUCGCUCCCCGCGUGUGGACGCC 23 12627
BCLllA-12014 + GCUCGCUCCCCGCGUGUGGACGCC 24 12628
BCLllA-12015 + CGCGGACUCAGGAGCGCC 18 12629
BCLllA-12016 + CCGCGGACUCAGGAGCGCC 19 12630
BCLllA-10087 + UCCGCGGACUCAGGAGCGCC 20 12631
BCLllA-12017 + CUCCGCGGACUCAGGAGCGCC 21 12632
BCLllA-12018 + ACUCCGCGGACUCAGGAGCGCC 22 12633
BCLllA-12019 + GACUCCGCGGACUCAGGAGCGCC 23 12634
BCLllA-12020 + CGACUCCGCGGACUCAGGAGCGCC 24 12635
BCLllA-12021 + CCAGGAGCCCGCGCGGCC 18 12636
BCLllA-12022 + UCCAGGAGCCCGCGCGGCC 19 12637
BCLllA-10089 + CUCCAGGAGCCCGCGCGGCC 20 12638
BCLllA-12023 + UCUCCAGGAGCCCGCGCGGCC 21 12639
BCLllA-12024 + GUCUCCAGGAGCCCGCGCGGCC 22 12640
BCLllA-12025 + AGUCUCCAGGAGCCCGCGCGGCC 23 12641
BCLllA-12026 + AAGUCUCCAGGAGCCCGCGCGGCC 24 12642
BCLllA-12027 + GGCCCCUCUCCCGACUCC 18 12643
BCLllA-12028 + CGGCCCCUCUCCCGACUCC 19 12644
BCLllA-12029 + GCGGCCCCUCUCCCGACUCC 20 12645
BCLllA-12030 + CGCGGCCCCUCUCCCGACUCC 21 12646
BCLllA-12031 + CCGCGGCCCCUCUCCCGACUCC 22 12647
BCLllA-12032 + GCCGCGGCCCCUCUCCCGACUCC 23 12648
BCLllA-12033 + CGCCGCGGCCCCUCUCCCGACUCC 24 12649
BCLllA-12034 + GGCAGCGCCCAAGUCUCC 18 12650
BCLllA-12035 + GGGCAGCGCCCAAGUCUCC 19 12651
BCLllA-10093 + AGGGCAGCGCCCAAGUCUCC 20 12652
BCLllA-12036 + AAGGGCAGCGCCCAAGUCUCC 21 12653
BCLllA-12037 + GAAGGGCAGCGCCCAAGUCUCC 22 12654
BCLllA-12038 + GGAAGGGCAGCGCCCAAGUCUCC 23 12655
BCLllA-12039 + CGGAAGGGCAGCGCCCAAGUCUCC 24 12656
BCLllA-12040 + GUCUCACCUCUU UUCUCC 18 12657
BCLllA-12041 + AGUCUCACCUCUUUUCUCC 19 12658
BCLllA-12042 + CAGUCUCACCUCU UUUCUCC 20 12659
BCLllA-12043 + CCAGUCUCACCUCUUUUCUCC 21 12660
BCLllA-12044 + GCCAGUCUCACCUCUUUUCUCC 22 12661
BCLllA-12045 + AGCCAGUCUCACCUCUU UUCUCC 23 12662 BCLllA-12046 + AAGCCAGUCUCACCUCU UUUCUCC 24 12663
BCLllA-12047 + CGGCGCGGGAGGGCAAGC 18 12664
BCLllA-12048 + GCGGCGCGGGAGGGCAAGC 19 12665
BCLllA-12049 + GGCGGCGCGGGAGGGCAAGC 20 12666
BCLllA-12050 + GCCCCGGGCUGGGGAAGC 18 12667
BCLllA-12051 + AGCCCCGGGCUGGGGAAGC 19 12668
BCLllA-12052 + CAGCCCCGGGCUGGGGAAGC 20 12669
BCLllA-12053 + GCAGCCCCGGGCUGGGGAAGC 21 12670
BCLllA-12054 + UGCAGCCCCGGGCUGGGGAAGC 22 12671
BCLllA-12055 + CUGCAGCCCCGGGCUGGGGAAGC 23 12672
BCLllA-12056 + GCUGCAGCCCCGGGCUGGGGAAGC 24 12673
BCLllA-12057 + GCGCCCCCAAGGCCGAGC 18 12674
BCLllA-12058 + GGCGCCCCCAAGGCCGAGC 19 12675
BCLllA-12059 + GGGCGCCCCCAAGGCCGAGC 20 12676
BCLllA-12060 + AGGGCGCCCCCAAGGCCGAGC 21 12677
BCLllA-12061 + GAGGGCGCCCCCAAGGCCGAGC 22 12678
BCLllA-12062 + CGAGGGCGCCCCCAAGGCCGAGC 23 12679
BCLllA-12063 + CCGAGGGCGCCCCCAAGGCCGAGC 24 12680
BCLllA-12064 + CUCCCCGCGUGUGGACGC 18 12681
BCLllA-12065 + GCUCCCCGCGUGUGGACGC 19 12682
BCLllA-12066 + CGCUCCCCGCGUGUGGACGC 20 12683
BCLllA-12067 + UCGCUCCCCGCGUGUGGACGC 21 12684
BCLllA-12068 + CUCGCUCCCCGCGUGUGGACGC 22 12685
BCLllA-12069 + GCUCGCUCCCCGCGUGUGGACGC 23 12686
BCLllA-12070 + CGCUCGCUCCCCGCGUGUGGACGC 24 12687
BCLllA-12071 + GCGCGGGAGGGCAAGCGC 18 12688
BCLllA-12072 + GGCGCGGGAGGGCAAGCGC 19 12689
BCLllA-12073 + CGGCGCGGGAGGGCAAGCGC 20 12690
BCLllA-12074 + CCGCGGACUCAGGAGCGC 18 12691
BCLllA-12075 + UCCGCGGACUCAGGAGCGC 19 12692
BCLllA-10106 + CUCCGCGGACUCAGGAGCGC 20 12693
BCLllA-12076 + ACUCCGCGGACUCAGGAGCGC 21 12694
BCLllA-12077 + GACUCCGCGGACUCAGGAGCGC 22 12695
BCLllA-12078 + CGACUCCGCGGACUCAGGAGCGC 23 12696
BCLllA-12079 + CCGACUCCGCGGACUCAGGAGCGC 24 12697
BCLllA-12080 + CCGAGCCCGCGGCUGCGC 18 12698
BCLllA-12081 + CCCGAGCCCGCGGCUGCGC 19 12699
BCLllA-12082 + CCCCGAGCCCGCGGCUGCGC 20 12700
BCLllA-12083 + GCCCCGAGCCCGCGGCUGCGC 21 12701
BCLllA-12084 + AGCCCCGAGCCCGCGGCUGCGC 22 12702
BCLllA-12085 + AAGCCCCGAGCCCGCGGCUGCGC 23 12703
BCLllA-12086 + AAAGCCCCGAGCCCGCGGCUGCGC 24 12704 BCLllA-12087 + GAGGCAGGCGGCGCAGGC 18 12705
BCLllA-12088 + AGAGGCAGGCGGCGCAGGC 19 12706
BCLllA-10110 + GAGAGGCAGGCGGCGCAGGC 20 12707
BCLllA-12089 + GGAGAGGCAGGCGGCGCAGGC 21 12708
BCLllA-12090 + GGGAGAGGCAGGCGGCGCAGGC 22 12709
BCLllA-12091 + GGGGAGAGGCAGGCGGCGCAGGC 23 12710
BCLllA-12092 + CGGGGAGAGGCAGGCGGCGCAGGC 24 12711
BCLllA-12093 + UCCAGGAGCCCGCGCGGC 18 12712
BCLllA-12094 + CUCCAGGAGCCCGCGCGGC 19 12713
BCLllA-12095 + UCUCCAGGAGCCCGCGCGGC 20 12714
BCLllA-12096 + GUCUCCAGGAGCCCGCGCGGC 21 12715
BCLllA-12097 + AGUCUCCAGGAGCCCGCGCGGC 22 12716
BCLllA-12098 + AAGUCUCCAGGAGCCCGCGCGGC 23 12717
BCLllA-12099 + CAAGUCUCCAGGAGCCCGCGCGGC 24 12718
BCLllA-12100 + GAGGCUGCAGCCCCGGGC 18 12719
BCLllA-12101 + GGAGGCUGCAGCCCCGGGC 19 12720
BCLllA-10115 + GGGAGGCUGCAGCCCCGGGC 20 12721
BCLllA-12102 + CGGGAGGCUGCAGCCCCGGGC 21 12722
BCLllA-12103 + CCGGGAGGCUGCAGCCCCGGGC 22 12723
BCLllA-12104 + ACCGGGAGGCUGCAGCCCCGGGC 23 12724
BCLllA-12105 + CACCGGGAGGCUGCAGCCCCGGGC 24 12725
BCLllA-12106 + UACAGCUCCGCAGCGGGC 18 12726
BCLllA-12107 + U UACAGCUCCGCAGCGGGC 19 12727
BCLllA-12108 + GUUACAGCUCCGCAGCGGGC 20 12728
BCLllA-12109 + AGUUACAGCUCCGCAGCGGGC 21 12729
BCLllA-12110 + AAGUUACAGCUCCGCAGCGGGC 22 12730
BCLllA-12111 + CAAGUUACAGCUCCGCAGCGGGC 23 12731
BCLllA-12112 + CCAAGUUACAGCUCCGCAGCGGGC 24 12732
BCLllA-12113 + GGCGGCGCAGGCCGGGGC 18 12733
BCLllA-12114 + AGGCGGCGCAGGCCGGGGC 19 12734
BCLllA-12115 + CAGGCGGCGCAGGCCGGGGC 20 12735
BCLllA-12116 + GCAGGCGGCGCAGGCCGGGGC 21 12736
BCLllA-12117 + GGCAGGCGGCGCAGGCCGGGGC 22 12737
BCLllA-12118 + AGGCAGGCGGCGCAGGCCGGGGC 23 12738
BCLllA-12119 + GAGGCAGGCGGCGCAGGCCGGGGC 24 12739
BCLllA-12120 + U UGCAAAACUGGCGGGGC 18 12740
BCLllA-12121 + UUUGCAAAACUGGCGGGGC 19 12741
BCLllA-10116 + UUUUGCAAAACUGGCGGGGC 20 12742
BCLllA-12122 + AUUUUGCAAAACUGGCGGGGC 21 12743
BCLllA-12123 + UAUUUUGCAAAACUGGCGGGGC 22 12744
BCLllA-12124 + U UAUUUUGCAAAACUGGCGGGGC 23 12745
BCLllA-12125 + AUUAUUUUGCAAAACUGGCGGGGC 24 12746 BCLllA-12126 + CAAACACCCACCUCUGGC 18 12747
BCLllA-12127 + ACAAACACCCACCUCUGGC 19 12748
BCLllA-10118 + GACAAACACCCACCUCUGGC 20 12749
BCLllA-12128 + GGACAAACACCCACCUCUGGC 21 12750
BCLllA-12129 + GGGACAAACACCCACCUCUGGC 22 12751
BCLllA-12130 + CGGGACAAACACCCACCUCUGGC 23 12752
BCLllA-12131 + GCGGGACAAACACCCACCUCUGGC 24 12753
BCLllA-12132 + GCGCUCGGGAAACUUUGC 18 12754
BCLllA-12133 + UGCGCUCGGGAAACUUUGC 19 12755
BCLllA-12134 + CUGCGCUCGGGAAACUU UGC 20 12756
BCLllA-12135 + GCUGCGCUCGGGAAACU UUGC 21 12757
BCLllA-12136 + GGCUGCGCUCGGGAAACUUUGC 22 12758
BCLllA-12137 + CGGCUGCGCUCGGGAAACUUUGC 23 12759
BCLllA-12138 + GCGGCUGCGCUCGGGAAACUUUGC 24 12760
BCLllA-12139 + UCCCGACUCCGCGGACUC 18 12761
BCLllA-12140 + CUCCCGACUCCGCGGACUC 19 12762
BCLllA-10122 + UCUCCCGACUCCGCGGACUC 20 12763
BCLllA-12141 + CUCUCCCGACUCCGCGGACUC 21 12764
BCLllA-12142 + CCUCUCCCGACUCCGCGGACUC 22 12765
BCLllA-12143 + CCCUCUCCCGACUCCGCGGACUC 23 12766
BCLllA-12144 + CCCCUCUCCCGACUCCGCGGACUC 24 12767
BCLllA-12145 + GAGCCCGCGGCUGCGCUC 18 12768
BCLllA-12146 + CGAGCCCGCGGCUGCGCUC 19 12769
BCLllA-10126 + CCGAGCCCGCGGCUGCGCUC 20 12770
BCLllA-12147 + CCCGAGCCCGCGGCUGCGCUC 21 12771
BCLllA-12148 + CCCCGAGCCCGCGGCUGCGCUC 22 12772
BCLllA-12149 + GCCCCGAGCCCGCGGCUGCGCUC 23 12773
BCLllA-12150 + AGCCCCGAGCCCGCGGCUGCGCUC 24 12774
BCLllA-12151 + AGCCAGGUAGAGUUGCUC 18 12775
BCLllA-12152 + AAGCCAGGUAGAGUUGCUC 19 12776
BCLllA-12153 + GAAGCCAGGUAGAGUUGCUC 20 12777
BCLllA-12154 + GGAAGCCAGGUAGAGUUGCUC 21 12778
BCLllA-12155 + GGGAAGCCAGGUAGAGUUGCUC 22 12779
BCLllA-12156 + AGGGAAGCCAGGUAGAGUUGCUC 23 12780
BCLllA-12157 + GAGGGAAGCCAGGUAGAGUUGCUC 24 12781
BCLllA-12158 + GGGCAGCGCCCAAGUCUC 18 12782
BCLllA-12159 + AGGGCAGCGCCCAAGUCUC 19 12783
BCLllA-12160 + AAGGGCAGCGCCCAAGUCUC 20 12784
BCLllA-12161 + GAAGGGCAGCGCCCAAGUCUC 21 12785
BCLllA-12162 + GGAAGGGCAGCGCCCAAGUCUC 22 12786
BCLllA-12163 + CGGAAGGGCAGCGCCCAAGUCUC 23 12787
BCLllA-12164 + CCGGAAGGGCAGCGCCCAAGUCUC 24 12788 BCLllA-12165 + U UUGGAGGGCUGCGGGUC 18 12789
BCLllA-12166 + GUUUGGAGGGCUGCGGGUC 19 12790
BCLllA-10129 + AGUUUGGAGGGCUGCGGGUC 20 12791
BCLllA-12167 + AAGUUUGGAGGGCUGCGGGUC 21 12792
BCLllA-12168 + UAAGUUUGGAGGGCUGCGGGUC 22 12793
BCLllA-12169 + CU AAGUUUGGAGGGCUGCGGGUC 23 12794
BCLllA-12170 + CCUAAGUUUGGAGGGCUGCGGGUC 24 12795
BCLllA-12171 + CGGCGGAAAGGAGGAAAG 18 12796
BCLllA-12172 + GCGGCGGAAAGGAGGAAAG 19 12797
BCLllA-10136 + AGCGGCGGAAAGGAGGAAAG 20 12798
BCLllA-12173 + AAGCGGCGG A A AG G AG G A A AG 21 12799
BCLllA-12174 + A A AG CG G CG G A A AG G AG G A A AG 22 12800
BCLllA-12175 + UAAAGCGGCGGAAAGGAGGAAAG 23 12801
BCLllA-12176 + AUAAAGCGGCGGAAAGGAGGAAAG 24 12802
BCLllA-12177 + AAAUAAAGCGGCGGAAAG 18 12803
BCLllA-12178 + G AAA U A A AG CG G CG G A A AG 19 12804
BCLllA-12179 + AGAAAUAAAGCGGCGGAAAG 20 12805
BCLllA-12180 + GAGAAAUAAAGCGGCGGAAAG 21 12806
BCLllA-12181 + AG AG A A A U A A AG CG G CG G A A AG 22 12807
BCLllA-12182 + AAGAGAAAUAAAGCGGCGGAAAG 23 12808
BCLllA-12183 + AAAGAGAAAUAAAGCGGCGGAAAG 24 12809
BCLllA-12184 + CCCGCGCGGCCUGGAAAG 18 12810
BCLllA-12185 + GCCCGCGCGGCCUGGAAAG 19 12811
BCLllA-10137 + AGCCCGCGCGGCCUGGAAAG 20 12812
BCLllA-12186 + GAGCCCGCGCGGCCUGGAAAG 21 12813
BCLllA-12187 + GGAGCCCGCGCGGCCUGGAAAG 22 12814
BCLllA-12188 + AGGAGCCCGCGCGGCCUGGAAAG 23 12815
BCLllA-12189 + CAGGAGCCCGCGCGGCCUGGAAAG 24 12816
BCLllA-12190 + AAGAAAAAUCACCCGAAG 18 12817
BCLllA-12191 + AAAGAAAAAUCACCCGAAG 19 12818
BCLllA-12192 + CAAAGAAAAAUCACCCGAAG 20 12819
BCLllA-12193 + GCAAAGAAAAAUCACCCGAAG 21 12820
BCLllA-12194 + AGCAAAGAAAAAUCACCCGAAG 22 12821
BCLllA-12195 + CAGCAAAGAAAAAUCACCCGAAG 23 12822
BCLllA-12196 + ACAG CAAAGAAAAAUCACCCGAAG 24 12823
BCLllA-12197 + AG C CG G C A C A A A AG G C AG 18 12824
BCLllA-12198 + GAG CCGG CACAAAAGG CAG 19 12825
BCLllA-10144 + GG AG CCGG CACAAAAGG CAG 20 12826
BCLllA-12199 + AGGAGCCGGCACAAAAGGCAG 21 12827
BCLllA-12200 + GAG GAG CCGG CAC AAAAG G CAG 22 12828
BCLllA-12201 + CGAGGAGCCGGCACAAAAGGCAG 23 12829
BCLllA-12202 + G CG AGG AG CCGG CACAAAAGG CAG 24 12830 BCLllA-12203 + GCGGAAAGGAGGAAAGAG 18 12831
BCLllA-12204 + GGCGGAAAGGAGGAAAGAG 19 12832
BCLllA-12205 + CGGCGGAAAGGAGGAAAGAG 20 12833
BCLllA-12206 + GCGGCGGAAAGGAGGAAAGAG 21 12834
BCLllA-12207 + AGCGGCGGAAAGGAGGAAAGAG 22 12835
BCLllA-12208 + AAGCGGCGGAAAGGAGGAAAGAG 23 12836
BCLllA-12209 + A AAG CGG CG G AAAG GAG G AAAG AG 24 12837
BCLllA-12210 + AUCACCCGAAGUUGAGAG 18 12838
BCLllA-12211 + AAU CACCCG AAG U UG AG AG 19 12839
BCLllA-12212 + AAAUCACCCGAAGUUGAGAG 20 12840
BCLllA-12213 + AAAAU CACCCG AAG U UG AG AG 21 12841
BCLllA-12214 + AAAAAUCACCCGAAGUUGAGAG 22 12842
BCLllA-12215 + G AAAAAU CACCCG AAG U UG AG AG 23 12843
BCLllA-12216 + AG AAAAAU CACCCG AAG U UG AG AG 24 12844
BCLllA-12217 + CGGGAAACUUUGCCCGAG 18 12845
BCLllA-12218 + UCGGGAAACUUUGCCCGAG 19 12846
BCLllA-12219 + CUCGGGAAACUU UGCCCGAG 20 12847
BCLllA-12220 + GCUCGGGAAACUU UGCCCGAG 21 12848
BCLllA-12221 + CGCUCGGGAAACUUUGCCCGAG 22 12849
BCLllA-12222 + GCGCUCGGGAAACUUUGCCCGAG 23 12850
BCLllA-12223 + UGCGCUCGGGAAACUUUGCCCGAG 24 12851
BCLllA-12224 + AGCUCCGCAGCGGGCGAG 18 12852
BCLllA-12225 + CAGCUCCGCAGCGGGCGAG 19 12853
BCLllA-10148 + ACAGCUCCGCAGCGGGCGAG 20 12854
BCLllA-12226 + UACAGCUCCGCAGCGGGCGAG 21 12855
BCLllA-12227 + U UACAGCUCCGCAGCGGGCGAG 22 12856
BCLllA-12228 + GUUACAGCUCCGCAGCGGGCGAG 23 12857
BCLllA-12229 + AGUUACAGCUCCGCAGCGGGCGAG 24 12858
BCLllA-12230 + CGCAGCGGGCGAGGGGAG 18 12859
BCLllA-12231 + CCGCAGCGGGCGAGGGGAG 19 12860
BCLllA-12232 + UCCGCAGCGGGCGAGGGGAG 20 12861
BCLllA-12233 + CUCCGCAGCGGGCGAGGGGAG 21 12862
BCLllA-12234 + GCUCCGCAGCGGGCGAGGGGAG 22 12863
BCLllA-12235 + AGCUCCGCAGCGGGCGAGGGGAG 23 12864
BCLllA-12236 + CAGCUCCGCAGCGGGCGAGGGGAG 24 12865
BCLllA-12237 + CCAUUUUCUUACGGUGAG 18 12866
BCLllA-12238 + CCCAUUUUCUUACGGUGAG 19 12867
BCLllA-10154 + CCCCAUU UUCUUACGGUGAG 20 12868
BCLllA-12239 + CCCCCAUUUUCUUACGGUGAG 21 12869
BCLllA-12240 + CCCCCCAUUUUCUUACGGUGAG 22 12870
BCLllA-12241 + CCCCCCCAUUUUCUUACGGUGAG 23 12871
BCLllA-12242 + ACCCCCCCAUUU UCUUACGGUGAG 24 12872 BCLllA-12243 + CCUGGAAAGAGGGGACCG 18 12873
BCLllA-12244 + GCCUGGAAAGAGGGGACCG 19 12874
BCLllA-10159 + GGCCUGGAAAGAGGGGACCG 20 12875
BCLllA-12245 + CGGCCUGGAAAGAGGGGACCG 21 12876
BCLllA-12246 + GCGGCCUGGAAAGAGGGGACCG 22 12877
BCLllA-12247 + CGCGGCCUGGAAAGAGGGGACCG 23 12878
BCLllA-12248 + GCGCGGCCUGGAAAGAGGGGACCG 24 12879
BCLllA-12249 + CUCGGGAAACUUUGCCCG 18 12880
BCLllA-12250 + GCUCGGGAAACUUUGCCCG 19 12881
BCLllA-10163 + CGCUCGGGAAACUUUGCCCG 20 12882
BCLllA-12251 + GCGCUCGGGAAACUUUGCCCG 21 12883
BCLllA-12252 + UGCGCUCGGGAAACUUUGCCCG 22 12884
BCLllA-12253 + CUGCGCUCGGGAAACUU UGCCCG 23 12885
BCLllA-12254 + GCUGCGCUCGGGAAACUUUGCCCG 24 12886
BCLllA-12255 + G AAAAG AG AAAU AAAG CG 18 12887
BCLllA-12256 + CGAAAAGAGAAAUAAAGCG 19 12888
BCLllA-12257 + UCGAAAAGAGAAAUAAAGCG 20 12889
BCLllA-12258 + UU CGAAAAGAGAAAUAAAGCG 21 12890
BCLllA-12259 + UU UCGAAAAGAGAAAUAAAGCG 22 12891
BCLllA-12260 + U U U U CG AAAAG AG AAAU AAAG CG 23 12892
BCLllA-12261 + C U U U U CG AAAAG AG AAA U AAAG CG 24 12893
BCLllA-12262 + UCCGCGGACUCAGGAGCG 18 12894
BCLllA-12263 + CUCCGCGGACUCAGGAGCG 19 12895
BCLllA-12264 + ACUCCGCGGACUCAGGAGCG 20 12896
BCLllA-12265 + GACUCCGCGGACUCAGGAGCG 21 12897
BCLllA-12266 + CGACUCCGCGGACUCAGGAGCG 22 12898
BCLllA-12267 + CCGACUCCGCGGACUCAGGAGCG 23 12899
BCLllA-12268 + CCCGACUCCGCGGACUCAGGAGCG 24 12900
BCLllA-12269 + CGCGGGAGGGCAAGCGCG 18 12901
BCLllA-12270 + GCGCGGGAGGGCAAGCGCG 19 12902
BCLllA-10178 + GGCGCGGGAGGGCAAGCGCG 20 12903
BCLllA-12271 + ACAGCUCCGCAGCGGGCG 18 12904
BCLllA-12272 + UACAGCUCCGCAGCGGGCG 19 12905
BCLllA-10180 + U UACAGCUCCGCAGCGGGCG 20 12906
BCLllA-12273 + GUUACAGCUCCGCAGCGGGCG 21 12907
BCLllA-12274 + AGUUACAGCUCCGCAGCGGGCG 22 12908
BCLllA-12275 + AAGUUACAGCUCCGCAGCGGGCG 23 12909
BCLllA-12276 + CAAGUUACAGCUCCGCAGCGGGCG 24 12910
BCLllA-12277 + GCUGGGGAAGCGCGGGCG 18 12911
BCLllA-12278 + GGCUGGGGAAGCGCGGGCG 19 12912
BCLllA-12279 + GGGCUGGGGAAGCGCGGGCG 20 12913
BCLllA-12280 + CGGGCUGGGGAAGCGCGGGCG 21 12914 BCLllA-12281 + CCGGGCUGGGGAAGCGCGGGCG 22 12915
BCLllA-12282 + CCCGGGCUGGGGAAGCGCGGGCG 23 12916
BCLllA-12283 + CCCCGGGCUGGGGAAGCGCGGGCG 24 12917
BCLllA-12284 + UGCAAAACUGGCGGGGCG 18 12918
BCLllA-12285 + U UGCAAAACUGGCGGGGCG 19 12919
BCLllA-10181 + UUUGCAAAACUGGCGGGGCG 20 12920
BCLllA-12286 + UUUUGCAAAACUGGCGGGGCG 21 12921
BCLllA-12287 + AUUUUGCAAAACUGGCGGGGCG 22 12922
BCLllA-12288 + UAUUUUGCAAAACUGGCGGGGCG 23 12923
BCLllA-12289 + UUAUUUUGCAAAACUGGCGGGGCG 24 12924
BCLllA-12290 + A A U A A AG CG G CG G A A AG G 18 12925
BCLllA-12291 + AAAUAAAGCGGCGGAAAGG 19 12926
BCLllA-10185 + GAAAUAAAGCGGCGGAAAGG 20 12927
BCLllA-12292 + AGAAAUAAAGCGGCGGAAAGG 21 12928
BCLllA-12293 + GAG AAA U A A AG CG G CG G A A AG G 22 12929
BCLllA-12294 + AG AG A A A U A A AG CG G CG G A A AG G 23 12930
BCLllA-12295 + AAGAGAAAUAAAGCGGCGGAAAGG 24 12931
BCLllA-12296 + CCGAGGGCGCCCCCAAGG 18 12932
BCLllA-12297 + CCCGAGGGCGCCCCCAAGG 19 12933
BCLllA-12298 + GCCCGAGGGCGCCCCCAAGG 20 12934
BCLllA-12299 + GGCCCGAGGGCGCCCCCAAGG 21 12935
BCLllA-12300 + GGGCCCGAGGGCGCCCCCAAGG 22 12936
BCLllA-12301 + GGGGCCCGAGGGCGCCCCCAAGG 23 12937
BCLllA-12302 + CGGGGCCCGAGGGCGCCCCCAAGG 24 12938
BCLllA-12303 + AGAGGCAGGCGGCGCAGG 18 12939
BCLllA-12304 + GAGAGGCAGGCGGCGCAGG 19 12940
BCLllA-12305 + GGAGAGGCAGGCGGCGCAGG 20 12941
BCLllA-12306 + GGGAGAGGCAGGCGGCGCAGG 21 12942
BCLllA-12307 + GGGGAGAGGCAGGCGGCGCAGG 22 12943
BCLllA-12308 + CGGGGAGAGGCAGGCGGCGCAGG 23 12944
BCLllA-12309 + CCGGGGAGAGGCAGGCGGCGCAGG 24 12945
BCLllA-12310 + GCAGCGGGCGAGGGGAGG 18 12946
BCLllA-12311 + CGCAGCGGGCGAGGGGAGG 19 12947
BCLllA-10190 + CCGCAGCGGGCGAGGGGAGG 20 12948
BCLllA-12312 + UCCGCAGCGGGCGAGGGGAGG 21 12949
BCLllA-12313 + CUCCGCAGCGGGCGAGGGGAGG 22 12950
BCLllA-12314 + GCUCCGCAGCGGGCGAGGGGAGG 23 12951
BCLllA-12315 + AGCUCCGCAGCGGGCGAGGGGAGG 24 12952
BCLllA-12316 + GGAGGGCUGCGGGUCCGG 18 12953
BCLllA-12317 + UGGAGGGCUGCGGGUCCGG 19 12954
BCLllA-12318 + U UGGAGGGCUGCGGGUCCGG 20 12955
BCLllA-12319 + U UUGGAGGGCUGCGGGUCCGG 21 12956 BCLllA-12320 + GUUUGGAGGGCUGCGGGUCCGG 22 12957
BCLllA-12321 + AGUUUGGAGGGCUGCGGGUCCGG 23 12958
BCLllA-12322 + AAGUUUGGAGGGCUGCGGGUCCGG 24 12959
BCLllA-12323 + AAAAGAGAAAUAAAGCGG 18 12960
BCLllA-12324 + G A A A AG AG AAA U A A AG CG G 19 12961
BCLllA-10193 + CGAAAAGAGAAAUAAAGCGG 20 12962
BCLllA-12325 + U CG A A A AG AG AAA U A A AG CG G 21 12963
BCLllA-12326 + U UCGAAAAGAGAAAUAAAGCGG 22 12964
BCLllA-12327 + U UUCGAAAAGAGAAAUAAAGCGG 23 12965
BCLllA-12328 + U U U U CGAAAAGAGAAAUAAAGCGG 24 12966
BCLllA-12329 + GUUACAGCUCCGCAGCGG 18 12967
BCLllA-12330 + AGUUACAGCUCCGCAGCGG 19 12968
BCLllA-12331 + AAGUUACAGCUCCGCAGCGG 20 12969
BCLllA-12332 + CAAGUUACAGCUCCGCAGCGG 21 12970
BCLllA-12333 + CCAAGUUACAGCUCCGCAGCGG 22 12971
BCLllA-12334 + UCCAAG U U ACAG C U CCG CAG CG G 23 12972
BCLllA-12335 + CUCCAAGUUACAGCUCCGCAGCGG 24 12973
BCLllA-12336 + CGGGCUGGGGAAGCGCGG 18 12974
BCLllA-12337 + CCGGGCUGGGGAAGCGCGG 19 12975
BCLllA-12338 + CCCGGGCUGGGGAAGCGCGG 20 12976
BCLllA-12339 + CCCCGGGCUGGGGAAGCGCGG 21 12977
BCLllA-12340 + GCCCCGGGCUGGGGAAGCGCGG 22 12978
BCLllA-12341 + AGCCCCGGGCUGGGGAAGCGCGG 23 12979
BCLllA-12342 + CAGCCCCGGGCUGGGGAAGCGCGG 24 12980
BCLllA-12343 + CUGGGGAAGCGCGGGCGG 18 12981
BCLllA-12344 + GCUGGGGAAGCGCGGGCGG 19 12982
BCLllA-10197 + GGCUGGGGAAGCGCGGGCGG 20 12983
BCLllA-12345 + GGGCUGGGGAAGCGCGGGCGG 21 12984
BCLllA-12346 + CGGGCUGGGGAAGCGCGGGCGG 22 12985
BCLllA-12347 + CCGGGCUGGGGAAGCGCGGGCGG 23 12986
BCLllA-12348 + CCCGGGCUGGGGAAGCGCGGGCGG 24 12987
BCLllA-12349 + GCAAAACUGGCGGGGCGG 18 12988
BCLllA-12350 + UGCAAAACUGGCGGGGCGG 19 12989
BCLllA-10198 + U UGCAAAACUGGCGGGGCGG 20 12990
BCLllA-12351 + U UUGCAAAACUGGCGGGGCGG 21 12991
BCLllA-12352 + U UUUGCAAAACUGGCGGGGCGG 22 12992
BCLllA-12353 + AUUUUGCAAAACUGGCGGGGCGG 23 12993
BCLllA-12354 + UAUUUUGCAAAACUGGCGGGGCGG 24 12994
BCLllA-12355 + UGGAAAGAGGGGACCGGG 18 12995
BCLllA-12356 + CUGGAAAGAGGGGACCGGG 19 12996
BCLllA-12357 + CCUGGAAAGAGGGGACCGGG 20 12997
BCLllA-12358 + GCCUGGAAAGAGGGGACCGGG 21 12998 BCLllA-12359 + GGCCUGGAAAGAGGGGACCGGG 22 12999
BCLllA-12360 + CGGCCUGGAAAGAGGGGACCGGG 23 13000
BCLllA-12361 + GCGGCCUGGAAAGAGGGGACCGGG 24 13001
BCLllA-12362 + GGAGGCUGCAGCCCCGGG 18 13002
BCLllA-12363 + GGGAGGCUGCAGCCCCGGG 19 13003
BCLllA-12364 + CGGGAGGCUGCAGCCCCGGG 20 13004
BCLllA-12365 + CCGGGAGGCUGCAGCCCCGGG 21 13005
BCLllA-12366 + ACCGGGAGGCUGCAGCCCCGGG 22 13006
BCLllA-12367 + CACCGGGAGGCUGCAGCCCCGGG 23 13007
BCLllA-12368 + GCACCGGGAGGCUGCAGCCCCGGG 24 13008
BCLllA-12369 + GGGCUGGGGAAGCGCGGG 18 13009
BCLllA-12370 + CGGGCUGGGGAAGCGCGGG 19 13010
BCLllA-10203 + CCGGGCUGGGGAAGCGCGGG 20 13011
BCLllA-12371 + CCCGGGCUGGGGAAGCGCGGG 21 13012
BCLllA-12372 + CCCCGGGCUGGGGAAGCGCGGG 22 13013
BCLllA-12373 + GCCCCGGGCUGGGGAAGCGCGGG 23 13014
BCLllA-12374 + AGCCCCGGGCUGGGGAAGCGCGGG 24 13015
BCLllA-12375 + CAAAACUGGCGGGGCGGG 18 13016
BCLllA-12376 + GCAAAACUGGCGGGGCGGG 19 13017
BCLllA-10204 + UGCAAAACUGGCGGGGCGGG 20 13018
BCLllA-12377 + UUGCAAAACUGGCGGGGCGGG 21 13019
BCLllA-12378 + U UUGCAAAACUGGCGGGGCGGG 22 13020
BCLllA-12379 + U UUUGCAAAACUGGCGGGGCGGG 23 13021
BCLllA-12380 + AUUUUGCAAAACUGGCGGGGCGGG 24 13022
BCLllA-12381 + UUUUGCAAAACUGGCGGG 18 13023
BCLllA-12382 + AUUUUGCAAAACUGGCGGG 19 13024
BCLllA-12383 + UAUUUUGCAAAACUGGCGGG 20 13025
BCLllA-12384 + U UAUUUUGCAAAACUGGCGGG 21 13026
BCLllA-12385 + AUUAUUUUGCAAAACUGGCGGG 22 13027
BCLllA-12386 + CAUUAUUUUGCAAAACUGGCGGG 23 13028
BCLllA-12387 + UCAUUAUUUUGCAAAACUGGCGGG 24 13029
BCLllA-12388 + GCGUGUGGACGCCAGGGG 18 13030
BCLllA-12389 + CGCGUGUGGACGCCAGGGG 19 13031
BCLllA-12390 + CCGCGUGUGGACGCCAGGGG 20 13032
BCLllA-12391 + CCCGCGUGUGGACGCCAGGGG 21 13033
BCLllA-12392 + CCCCGCGUGUGGACGCCAGGGG 22 13034
BCLllA-12393 + UCCCCGCGUGUGGACGCCAGGGG 23 13035
BCLllA-12394 + CUCCCCGCGUGUGGACGCCAGGGG 24 13036
BCLllA-12395 + AAAACUGGCGGGGCGGGG 18 13037
BCLllA-12396 + CAAAACUGGCGGGGCGGGG 19 13038
BCLllA-10207 + GCAAAACUGGCGGGGCGGGG 20 13039
BCLllA-12397 + UGCAAAACUGGCGGGGCGGGG 21 13040 BCLllA-12398 + UUGCAAAACUGGCGGGGCGGGG 22 13041
BCLllA-12399 + UUUGCAAAACUGGCGGGGCGGGG 23 13042
BCLllA-12400 + UUUUGCAAAACUGGCGGGGCGGGG 24 13043
BCLllA-12401 + U UUGCAAAACUGGCGGGG 18 13044
BCLllA-12402 + U UUUGCAAAACUGGCGGGG 19 13045
BCLllA-10208 + AUUUUGCAAAACUGGCGGGG 20 13046
BCLllA-12403 + UAUUUUGCAAAACUGGCGGGG 21 13047
BCLllA-12404 + UUAUUUUGCAAAACUGGCGGGG 22 13048
BCLllA-12405 + AUUAUUUUGCAAAACUGGCGGGG 23 13049
BCLllA-12406 + CAUUAUUUUGCAAAACUGGCGGGG 24 13050
BCLllA-12407 + CGGGCGAGGGGAGGUGGG 18 13051
BCLllA-12408 + GCGGGCGAGGGGAGGUGGG 19 13052
BCLllA-10213 + AGCGGGCGAGGGGAGGUGGG 20 13053
BCLllA-12409 + CAGCGGGCGAGGGGAGGUGGG 21 13054
BCLllA-12410 + GCAGCGGGCGAGGGGAGGUGGG 22 13055
BCLllA-12411 + CGCAGCGGGCGAGGGGAGGUGGG 23 13056
BCLllA-12412 + CCGCAGCGGGCGAGGGGAGGUGGG 24 13057
BCLllA-12413 + AUUAUUUUGCAAAACUGG 18 13058
BCLllA-12414 + CAUUAUUUUGCAAAACUGG 19 13059
BCLllA-10215 + UCAUUAUUUUGCAAAACUGG 20 13060
BCLllA-12415 + U UCAUUAUUUUGCAAAACUGG 21 13061
BCLllA-12416 + GUUCAUUAUUUUGCAAAACUGG 22 13062
BCLllA-12417 + UGUUCAUUAUUUUGCAAAACUGG 23 13063
BCLllA-12418 + U UGUUCAUUAUUUUGCAAAACUGG 24 13064
BCLllA-12419 + ACAAACACCCACCUCUGG 18 13065
BCLllA-12420 + GACAAACACCCACCUCUGG 19 13066
BCLllA-12421 + GGACAAACACCCACCUCUGG 20 13067
BCLllA-12422 + GGGACAAACACCCACCUCUGG 21 13068
BCLllA-12423 + CGGGACAAACACCCACCUCUGG 22 13069
BCLllA-12424 + GCGGGACAAACACCCACCUCUGG 23 13070
BCLllA-12425 + AGCGGGACAAACACCCACCUCUGG 24 13071
BCLllA-12426 + GCGGGCGAGGGGAGGUGG 18 13072
BCLllA-12427 + AGCGGGCGAGGGGAGGUGG 19 13073
BCLllA-12428 + CAGCGGGCGAGGGGAGGUGG 20 13074
BCLllA-12429 + GCAGCGGGCGAGGGGAGGUGG 21 13075
BCLllA-12430 + CGCAGCGGGCGAGGGGAGGUGG 22 13076
BCLllA-12431 + CCGCAGCGGGCGAGGGGAGGUGG 23 13077
BCLllA-12432 + UCCGCAGCGGGCGAGGGGAGGUGG 24 13078
BCLllA-12433 + CAUUAUUUUGCAAAACUG 18 13079
BCLllA-12434 + UCAUUAUUUUGCAAAACUG 19 13080
BCLllA-12435 + U UCAUUAUUUUGCAAAACUG 20 13081
BCLllA-12436 + GUUCAUUAUUUUGCAAAACUG 21 13082 BCLllA-12437 + UGUUCAUUAUUUUGCAAAACUG 22 13083
BCLllA-12438 + U UGUUCAUUAUUUUGCAAAACUG 23 13084
BCLllA-12439 + AUUGUUCAUUAUUU UGCAAAACUG 24 13085
BCLllA-12440 + GGCUGCAGCCCCGGGCUG 18 13086
BCLllA-12441 + AGGCUGCAGCCCCGGGCUG 19 13087
BCLllA-10226 + GAGGCUGCAGCCCCGGGCUG 20 13088
BCLllA-12442 + GGAGGCUGCAGCCCCGGGCUG 21 13089
BCLllA-12443 + GGGAGGCUGCAGCCCCGGGCUG 22 13090
BCLllA-12444 + CGGGAGGCUGCAGCCCCGGGCUG 23 13091
BCLllA-12445 + CCGGGAGGCUGCAGCCCCGGGCUG 24 13092
BCLllA-12446 + GCCACU UUCUCACUAUUG 18 13093
BCLllA-12447 + UGCCACUUUCUCACUAU UG 19 13094
BCLllA-10230 + GUGCCACUUUCUCACUAUUG 20 13095
BCLllA-12448 + AGUGCCACUU UCUCACUAUUG 21 13096
BCLllA-12449 + CAGUGCCACUUUCUCACUAUUG 22 13097
BCLllA-12450 + ACAGUGCCACUUUCUCACUAUUG 23 13098
BCLllA-12451 + CACAGUGCCACUUUCUCACUAUUG 24 13099
BCLllA-12452 + GAAUCCAGCCUAAGUUUG 18 13100
BCLllA-12453 + GGAAUCCAGCCUAAGU UUG 19 13101
BCLllA-12454 + CGGAAUCCAGCCUAAGU UUG 20 13102
BCLllA-12455 + GCGGAAUCCAGCCUAAGUUUG 21 13103
BCLllA-12456 + CGCGGAAUCCAGCCUAAGUUUG 22 13104
BCLllA-12457 + ACGCGGAAUCCAGCCUAAGUUUG 23 13105
BCLllA-12458 + AACGCGGAAUCCAGCCUAAGUUUG 24 13106
BCLllA-12459 + CUCCCGACUCCGCGGACU 18 13107
BCLllA-12460 + UCUCCCGACUCCGCGGACU 19 13108
BCLllA-12461 + CUCUCCCGACUCCGCGGACU 20 13109
BCLllA-12462 + CCUCUCCCGACUCCGCGGACU 21 13110
BCLllA-12463 + CCCUCUCCCGACUCCGCGGACU 22 13111
BCLllA-12464 + CCCCUCUCCCGACUCCGCGGACU 23 13112
BCLllA-12465 + GCCCCUCUCCCGACUCCGCGGACU 24 13113
BCLllA-12466 + CGAGCCCGCGGCUGCGCU 18 13114
BCLllA-12467 + CCGAGCCCGCGGCUGCGCU 19 13115
BCLllA-10239 + CCCGAGCCCGCGGCUGCGCU 20 13116
BCLllA-12468 + CCCCGAGCCCGCGGCUGCGCU 21 13117
BCLllA-12469 + GCCCCGAGCCCGCGGCUGCGCU 22 13118
BCLllA-12470 + AGCCCCGAGCCCGCGGCUGCGCU 23 13119
BCLllA-12471 + AAGCCCCGAGCCCGCGGCUGCGCU 24 13120
BCLllA-12472 + AGGCUGCAGCCCCGGGCU 18 13121
BCLllA-12473 + GAGGCUGCAGCCCCGGGCU 19 13122
BCLllA-10240 + GGAGGCUGCAGCCCCGGGCU 20 13123
BCLllA-12474 + GGGAGGCUGCAGCCCCGGGCU 21 13124 BCLllA-12475 + CGGGAGGCUGCAGCCCCGGGCU 22 13125
BCLllA-12476 + CCGGGAGGCUGCAGCCCCGGGCU 23 13126
BCLllA-12477 + ACCGGGAGGCUGCAGCCCCGGGCU 24 13127
BCLllA-12478 + GCGGAAUCCAGCCUAAGU 18 13128
BCLllA-12479 + CGCGGAAUCCAGCCUAAGU 19 13129
BCLllA-12480 + ACGCGGAAUCCAGCCUAAGU 20 13130
BCLllA-12481 + AACGCGGAAUCCAGCCUAAGU 21 13131
BCLllA-12482 + CAACGCGGAAUCCAGCCUAAGU 22 13132
BCLllA-12483 + GCAACGCGGAAUCCAGCCUAAGU 23 13133
BCLllA-12484 + GGCAACGCGGAAUCCAGCCUAAGU 24 13134
BCLllA-12485 + CAUUUUCU UACGGUGAGU 18 13135
BCLllA-12486 + CCAUUUUCUUACGGUGAGU 19 13136
BCLllA-10244 + CCCAUUUUCUUACGGUGAGU 20 13137
BCLllA-12487 + CCCCAUU UUCUUACGGUGAGU 21 13138
BCLllA-12488 + CCCCCAUUUUCUUACGGUGAGU 22 13139
BCLllA-12489 + CCCCCCAUUUUCUUACGGUGAGU 23 13140
BCLllA-12490 + CCCCCCCAUUUUCUUACGGUGAGU 24 13141
BCLllA-12491 + CGCGCUCGCUCCCCGCGU 18 13142
BCLllA-12492 + CCGCGCUCGCUCCCCGCGU 19 13143
BCLllA-12493 + GCCGCGCUCGCUCCCCGCGU 20 13144
BCLllA-12494 + CGCCGCGCUCGCUCCCCGCGU 21 13145
BCLllA-12495 + CCGCCGCGCUCGCUCCCCGCGU 22 13146
BCLllA-12496 + GCCGCCGCGCUCGCUCCCCGCGU 23 13147
BCLllA-12497 + CGCCGCCGCGCUCGCUCCCCGCGU 24 13148
BCLllA-12498 + CAGCGGGCGAGGGGAGGU 18 13149
BCLllA-12499 + GCAGCGGGCGAGGGGAGGU 19 13150
BCLllA-10247 + CGCAGCGGGCGAGGGGAGGU 20 13151
BCLllA-12500 + CCGCAGCGGGCGAGGGGAGGU 21 13152
BCLllA-12501 + UCCGCAGCGGGCGAGGGGAGGU 22 13153
BCLllA-12502 + CUCCGCAGCGGGCGAGGGGAGGU 23 13154
BCLllA-12503 + GCUCCGCAGCGGGCGAGGGGAGGU 24 13155
BCLllA-12504 + GUUUGGAGGGCUGCGGGU 18 13156
BCLllA-12505 + AGUUUGGAGGGCUGCGGGU 19 13157
BCLllA-12506 + AAGUUUGGAGGGCUGCGGGU 20 13158
BCLllA-12507 + UAAGUUUGGAGGGCUGCGGGU 21 13159
BCLllA-12508 + CUAAGUUUGGAGGGCUGCGGGU 22 13160
BCLllA-12509 + CCUAAGUUUGGAGGGCUGCGGGU 23 13161
BCLllA-12510 + GCCUAAGUUUGGAGGGCUGCGGGU 24 13162
BCLllA-12511 + UGCCACUUUCUCACUAU U 18 13163
BCLllA-12512 + GUGCCACU UUCUCACUAUU 19 13164
BCLllA-12513 + AGUGCCACUUUCUCACUAUU 20 13165
BCLllA-12514 + CAGUGCCACUUUCUCACUAUU 21 13166 BCLllA-12515 + ACAGUGCCACUUUCUCACUAUU 22 13167
BCLllA-12516 + CACAGUGCCACUUUCUCACUAUU 23 13168
BCLllA-12517 + CCACAGUGCCACUUUCUCACUAUU 24 13169
BCLllA-12518 + GAAAAAUCACCCGAAGU U 18 13170
BCLllA-12519 + AG AAAAAU CACCCG AAG U U 19 13171
BCLllA-12520 + AAGAAAAAUCACCCGAAGUU 20 13172
BCLllA-12521 + AAAG AAAAAU CACCCG AAG U U 21 13173
BCLllA-12522 + CAAAG AAAAAU CACCCG AAG UU 22 13174
BCLllA-12523 + G CAAAG AAAAAU CACCCG AAG UU 23 13175
BCLllA-12524 + AGCAAAGAAAAAUCACCCGAAGUU 24 13176
BCLllA-12525 + CGGAAUCCAGCCUAAGUU 18 13177
BCLllA-12526 + GCGGAAUCCAGCCUAAGUU 19 13178
BCLllA-10257 + CGCGGAAUCCAGCCUAAGUU 20 13179
BCLllA-12527 + ACGCGGAAUCCAGCCUAAGUU 21 13180
BCLllA-12528 + AACGCGGAAUCCAGCCUAAGUU 22 13181
BCLllA-12529 + CAACGCGGAAUCCAGCCUAAGUU 23 13182
BCLllA-12530 + GCAACGCGGAAUCCAGCCUAAGUU 24 13183
BCLllA-12531 + GAAUCAUUGCAUUCCUUU 18 13184
BCLllA-12532 + GGAAUCAUUGCAUUCCU UU 19 13185
BCLllA-12533 + UGGAAUCAUUGCAUUCCUUU 20 13186
BCLllA-12534 + GUGGAAUCAUUGCAUUCCUUU 21 13187
BCLllA-12535 + AGUGGAAUCAUUGCAU UCCUUU 22 13188
BCLllA-12536 + GAGUGGAAUCAUUGCAUUCCUUU 23 13189
BCLllA-12537 + GGAGUGGAAUCAUUGCAUUCCUUU 24 13190
BCLllA-12538 - CCACUCACCGUAAGAAAA 18 13191
BCLllA-12539 - CCCACU CACCG U AAG AAAA 19 13192
BCLllA-10024 - UCCCACUCACCGUAAGAAAA 20 13193
BCLllA-12540 - U U CCCACU CACCG U AAG AAAA 21 13194
BCLllA-12541 - CU U CCCACU CACCG U AAG AAAA 22 13195
BCLllA-12542 - GCU U CCCACU CACCG U AAG AAAA 23 13196
BCLllA-12543 - UGCUUCCCACUCACCGUAAGAAAA 24 13197
BCLllA-12544 - CCCACU CACCG U AAG AAA 18 13198
BCLllA-12545 - U CCCACU CACCG U AAG AAA 19 13199
BCLllA-12546 - U UCCCACUCACCGUAAGAAA 20 13200
BCLllA-12547 - CUUCCCACUCACCGUAAGAAA 21 13201
BCLllA-12548 - GCUUCCCACUCACCGUAAGAAA 22 13202
BCLllA-12549 - UGCU UCCCACUCACCGUAAGAAA 23 13203
BCLllA-12550 - U UGCUUCCCACUCACCGUAAGAAA 24 13204
BCLllA-12551 - UGGGAGCUGGUGGGGAAA 18 13205
BCLllA-12552 - GUGGGAGCUGGUGGGGAAA 19 13206
BCLllA-10028 - GGUGGGAGCUGGUGGGGAAA 20 13207
BCLllA-12553 - GGGUGGGAGCUGGUGGGGAAA 21 13208 BCLllA-12554 - GGGGUGGGAGCUGGUGGGGAAA 22 13209
BCLllA-12555 - GGGGGUGGGAGCUGGUGGGGAAA 23 13210
BCLllA-12556 - UGGGGGUGGGAGCUGGUGGGGAAA 24 13211
BCLllA-12557 - AACGAUUCCCGGGGAGAA 18 13212
BCLllA-12558 - AAACGAUUCCCGGGGAGAA 19 13213
BCLllA-12559 - AAAACGAUUCCCGGGGAGAA 20 13214
BCLllA-12560 - AAAAACGAUUCCCGGGGAGAA 21 13215
BCLllA-12561 - AAAAAACGAUUCCCGGGGAGAA 22 13216
BCLllA-12562 - UAAAAAACGAUUCCCGGGGAGAA 23 13217
BCLllA-12563 - CUAAAAAACGAUUCCCGGGGAGAA 24 13218
BCLllA-12564 - UUUAUUUCUCUUUUCGAA 18 13219
BCLllA-12565 - CUUUAUUUCUCUUUUCGAA 19 13220
BCLllA-12566 - GCUUUAUUUCUCUUUUCGAA 20 13221
BCLllA-12567 - CGCUUUAUUUCUCUUUUCGAA 21 13222
BCLllA-12568 - CCGCUUUAUUUCUCUUUUCGAA 22 13223
BCLllA-12569 - GCCGCUUUAUUUCUCUUUUCGAA 23 13224
BCLllA-12570 - CGCCGCUUUAUUUCUCUUUUCGAA 24 13225
BCLllA-12571 - GUGGGAGCUGGUGGGGAA 18 13226
BCLllA-12572 - GGUGGGAGCUGGUGGGGAA 19 13227
BCLllA-10032 - GGGUGGGAGCUGGUGGGGAA 20 13228
BCLllA-12573 - GGGGUGGGAGCUGGUGGGGAA 21 13229
BCLllA-12574 - GGGGGUGGGAGCUGGUGGGGAA 22 13230
BCLllA-12575 - UGGGGGUGGGAGCUGGUGGGGAA 23 13231
BCLllA-12576 - CUGGGGGUGGGAGCUGGUGGGGAA 24 13232
BCLllA-12577 - GAAAGUGGCACUGUGGAA 18 13233
BCLllA-12578 - AGAAAGUGGCACUGUGGAA 19 13234
BCLllA-10033 - GAGAAAGUGGCACUGUGGAA 20 13235
BCLllA-12579 - UGAGAAAGUGGCACUGUGGAA 21 13236
BCLllA-12580 - GUGAGAAAGUGGCACUGUGGAA 22 13237
BCLllA-12581 - AGUGAGAAAGUGGCACUGUGGAA 23 13238
BCLllA-12582 - UAGUGAGAAAGUGGCACUGUGGAA 24 13239
BCLllA-12583 - CUCACGGUCAAGUGUGCA 18 13240
BCLllA-12584 - GCUCACGGUCAAGUGUGCA 19 13241
BCLllA-12585 - CGCUCACGGUCAAGUGUGCA 20 13242
BCLllA-12586 - GCGCUCACGGUCAAGUGUGCA 21 13243
BCLllA-12587 - CGCGCUCACGGUCAAGUGUGCA 22 13244
BCLllA-12588 - GCGCGCUCACGGUCAAGUGUGCA 23 13245
BCLllA-12589 - AGCGCGCUCACGGUCAAGUGUGCA 24 13246
BCLllA-12590 - GGAGAGGGGCCGCGGCGA 18 13247
BCLllA-12591 - GGGAGAGGGGCCGCGGCGA 19 13248
BCLllA-10043 - CGGGAGAGGGGCCGCGGCGA 20 13249
BCLllA-12592 - UCGGGAGAGGGGCCGCGGCGA 21 13250 BCLllA-12593 - GUCGGGAGAGGGGCCGCGGCGA 22 13251
BCLllA-12594 - AGUCGGGAGAGGGGCCGCGGCGA 23 13252
BCLllA-12595 - GAGUCGGGAGAGGGGCCGCGGCGA 24 13253
BCLllA-12596 - CCGUGGGACCGGGAAGGA 18 13254
BCLllA-12597 - GCCGUGGGACCGGGAAGGA 19 13255
BCLllA-10045 - AGCCGUGGGACCGGGAAGGA 20 13256
BCLllA-12598 - GAGCCGUGGGACCGGGAAGGA 21 13257
BCLllA-12599 - AGAGCCGUGGGACCGGGAAGGA 22 13258
BCLllA-12600 - GAGAGCCGUGGGACCGGGAAGGA 23 13259
BCLllA-12601 - GGAGAGCCGUGGGACCGGGAAGGA 24 13260
BCLllA-12602 - GAGUCCGCGGAGUCGGGA 18 13261
BCLllA-12603 - UGAGUCCGCGGAGUCGGGA 19 13262
BCLllA-12604 - CUGAGUCCGCGGAGUCGGGA 20 13263
BCLllA-12605 - CCUGAGUCCGCGGAGUCGGGA 21 13264
BCLllA-12606 - UCCUGAGUCCGCGGAGUCGGGA 22 13265
BCLllA-12607 - CUCCUGAGUCCGCGGAGUCGGGA 23 13266
BCLllA-12608 - GCUCCUGAGUCCGCGGAGUCGGGA 24 13267
BCLllA-12609 - GGCGUCCACACGCGGGGA 18 13268
BCLllA-12610 - UGGCGUCCACACGCGGGGA 19 13269
BCLllA-12611 - CUGGCGUCCACACGCGGGGA 20 13270
BCLllA-12612 - CCUGGCGUCCACACGCGGGGA 21 13271
BCLllA-12613 - CCCUGGCGUCCACACGCGGGGA 22 13272
BCLllA-12614 - CCCCUGGCGUCCACACGCGGGGA 23 13273
BCLllA-12615 - GCCCCUGGCGUCCACACGCGGGGA 24 13274
BCLllA-12616 - GCGCGGCGGCGGCGGGGA 18 13275
BCLllA-12617 - AGCGCGGCGGCGGCGGGGA 19 13276
BCLllA-10051 - GAGCGCGGCGGCGGCGGGGA 20 13277
BCLllA-12618 - CGAGCGCGGCGGCGGCGGGGA 21 13278
BCLllA-12619 - GCGAGCGCGGCGGCGGCGGGGA 22 13279
BCLllA-12620 - AGCGAGCGCGGCGGCGGCGGGGA 23 13280
BCLllA-12621 - GAGCGAGCGCGGCGGCGGCGGGGA 24 13281
BCLllA-12622 - GGUGGGAGCUGGUGGGGA 18 13282
BCLllA-12623 - GGGUGGGAGCUGGUGGGGA 19 13283
BCLllA-12624 - GGGGUGGGAGCUGGUGGGGA 20 13284
BCLllA-12625 - GGGGGUGGGAGCUGGUGGGGA 21 13285
BCLllA-12626 - UGGGGGUGGGAGCUGGUGGGGA 22 13286
BCLllA-12627 - CUGGGGGUGGGAGCUGGUGGGGA 23 13287
BCLllA-12628 - CCUGGGGGUGGGAGCUGGUGGGGA 24 13288
BCLllA-12629 - ACGGGGAGAGCCGUGGGA 18 13289
BCLllA-12630 - GACGGGGAGAGCCGUGGGA 19 13290
BCLllA-12631 - CGACGGGGAGAGCCGUGGGA 20 13291
BCLllA-12632 - GCGACGGGGAGAGCCGUGGGA 21 13292 BCLllA-12633 - GGCGACGGGGAGAGCCGUGGGA 22 13293
BCLllA-12634 - CGGCGACGGGGAGAGCCGUGGGA 23 13294
BCLllA-12635 - GCGGCGACGGGGAGAGCCGUGGGA 24 13295
BCLllA-12636 - AGAAAGUGGCACUGUGGA 18 13296
BCLllA-12637 - GAGAAAGUGGCACUGUGGA 19 13297
BCLllA-12638 - UGAGAAAGUGGCACUGUGGA 20 13298
BCLllA-12639 - GUGAGAAAGUGGCACUGUGGA 21 13299
BCLllA-12640 - AGUGAGAAAGUGGCACUGUGGA 22 13300
BCLllA-12641 - UAGUGAGAAAGUGGCACUGUGGA 23 13301
BCLllA-12642 - AUAGUGAGAAAGUGGCACUGUGGA 24 13302
BCLllA-12643 - CGCCAGUUUUG C A A A A U A 18 13303
BCLllA-12644 - CCGCCAGUUUUGCAAAAUA 19 13304
BCLllA-12645 - CCCGCCAGUUUUGCAAAAUA 20 13305
BCLllA-12646 - CCCCGCCAGUUUUGCAAAAUA 21 13306
BCLllA-12647 - GCCCCGCCAGUUUUGCAAAAUA 22 13307
BCLllA-12648 - CGCCCCGCCAGUUUUGCAAAAUA 23 13308
BCLllA-12649 - CCGCCCCGCCAGUUUUGCAAAAUA 24 13309
BCLllA-12650 - GUAGUCAUCCCCACAAUA 18 13310
BCLllA-12651 - AGUAGUCAUCCCCACAAUA 19 13311
BCLllA-12652 - AAGUAGUCAUCCCCACAAUA 20 13312
BCLllA-12653 - AAAGUAGUCAUCCCCACAAUA 21 13313
BCLllA-12654 - GAAAGUAGUCAUCCCCACAAUA 22 13314
BCLllA-12655 - GGAAAGUAGUCAUCCCCACAAUA 23 13315
BCLllA-12656 - AGGAAAGUAGUCAUCCCCACAAUA 24 13316
BCLllA-12657 - GGGAAGUGGGUGUGCGUA 18 13317
BCLllA-12658 - GGGGAAGUGGGUGUGCGUA 19 13318
BCLllA-10055 - AGGGGAAGUGGGUGUGCGUA 20 13319
BCLllA-12659 - GAGGGGAAGUGGGUGUGCGUA 21 13320
BCLllA-12660 - GGAGGGGAAGUGGGUGUGCGUA 22 13321
BCLllA-12661 - GGGAGGGGAAGUGGGUGUGCGUA 23 13322
BCLllA-12662 - GGGGAGGGGAAGUGGGUGUGCGUA 24 13323
BCLllA-12663 - UAAGAAAAUGGGGGGGUA 18 13324
BCLllA-12664 - GUAAGAAAAUGGGGGGGUA 19 13325
BCLllA-10056 - CGUAAGAAAAUGGGGGGGUA 20 13326
BCLllA-12665 - CCGUAAGAAAAUGGGGGGGUA 21 13327
BCLllA-12666 - ACCGUAAGAAAAUGGGGGGGUA 22 13328
BCLllA-12667 - CACCGUAAGAAAAUGGGGGGGUA 23 13329
BCLllA-12668 - UCACCGUAAGAAAAUGGGGGGGUA 24 13330
BCLllA-12669 - AACAACUCACAUGCAAAC 18 13331
BCLllA-12670 - G A ACAAC U CAC AU G CAAAC 19 13332
BCLllA-12671 - CGAACAACUCACAUGCAAAC 20 13333
BCLllA-12672 - GCGAACAACUCACAUGCAAAC 21 13334 BCLllA-12673 - U G CG AACAAC U CAC AU G CAAAC 22 13335
BCLllA-12674 - UUGCGAACAACUCACAUGCAAAC 23 13336
BCLllA-12675 - GUUGCGAACAACUCACAUGCAAAC 24 13337
BCLllA-12676 - CCGCUGCGGAGCUGUAAC 18 13338
BCLllA-12677 - CCCGCUGCGGAGCUGUAAC 19 13339
BCLllA-12678 - GCCCGCUGCGGAGCUGUAAC 20 13340
BCLllA-12679 - CGCCCGCUGCGGAGCUGUAAC 21 13341
BCLllA-12680 - UCGCCCGCUGCGGAGCUGUAAC 22 13342
BCLllA-12681 - CUCGCCCGCUGCGGAGCUGUAAC 23 13343
BCLllA-12682 - CCUCGCCCGCUGCGGAGCUGUAAC 24 13344
BCLllA-12683 - GGCCCCUGGCGUCCACAC 18 13345
BCLllA-12684 - CGGCCCCUGGCGUCCACAC 19 13346
BCLllA-12685 - UCGGCCCCUGGCGUCCACAC 20 13347
BCLllA-12686 - UUCGGCCCCUGGCGUCCACAC 21 13348
BCLllA-12687 - CUUCGGCCCCUGGCGUCCACAC 22 13349
BCLllA-12688 - ACUUCGGCCCCUGGCGUCCACAC 23 13350
BCLllA-12689 - UACUUCGGCCCCUGGCGUCCACAC 24 13351
BCLllA-12690 - GCGCGGGCUCCUGGAGAC 18 13352
BCLllA-12691 - CGCGCGGGCUCCUGGAGAC 19 13353
BCLllA-12692 - CCGCGCGGGCUCCUGGAGAC 20 13354
BCLllA-12693 - GCCGCGCGGGCUCCUGGAGAC 21 13355
BCLllA-12694 - GGCCGCGCGGGCUCCUGGAGAC 22 13356
BCLllA-12695 - AGGCCGCGCGGGCUCCUGGAGAC 23 13357
BCLllA-12696 - CAGGCCGCGCGGGCUCCUGGAGAC 24 13358
BCLllA-12697 - GAGAGGGGCCGCGGCGAC 18 13359
BCLllA-12698 - GGAGAGGGGCCGCGGCGAC 19 13360
BCLllA-10061 - GGGAGAGGGGCCGCGGCGAC 20 13361
BCLllA-12699 - CGGGAGAGGGGCCGCGGCGAC 21 13362
BCLllA-12700 - UCGGGAGAGGGGCCGCGGCGAC 22 13363
BCLllA-12701 - GUCGGGAGAGGGGCCGCGGCGAC 23 13364
BCLllA-12702 - AGUCGGGAGAGGGGCCGCGGCGAC 24 13365
BCLllA-12703 - CGUGGGACCGGGAAGGAC 18 13366
BCLllA-12704 - CCGUGGGACCGGGAAGGAC 19 13367
BCLllA-10062 - GCCGUGGGACCGGGAAGGAC 20 13368
BCLllA-12705 - AGCCGUGGGACCGGGAAGGAC 21 13369
BCLllA-12706 - GAGCCGUGGGACCGGGAAGGAC 22 13370
BCLllA-12707 - AGAGCCGUGGGACCGGGAAGGAC 23 13371
BCLllA-12708 - GAGAGCCGUGGGACCGGGAAGGAC 24 13372
BCLllA-12709 - CGGGGAGAGCCGUGGGAC 18 13373
BCLllA-12710 - ACGGGGAGAGCCGUGGGAC 19 13374
BCLllA-10065 - GACGGGGAGAGCCGUGGGAC 20 13375
BCLllA-12711 - CGACGGGGAGAGCCGUGGGAC 21 13376 BCLllA-12712 - GCGACGGGGAGAGCCGUGGGAC 22 13377
BCLllA-12713 - GGCGACGGGGAGAGCCGUGGGAC 23 13378
BCLllA-12714 - CGGCGACGGGGAGAGCCGUGGGAC 24 13379
BCLllA-12715 - ACAACUCACAUGCAAACC 18 13380
BCLllA-12716 - AACAACUCACAUGCAAACC 19 13381
BCLllA-10066 - GAACAACUCACAUGCAAACC 20 13382
BCLllA-12717 - CGAACAACUCACAUGCAAACC 21 13383
BCLllA-12718 - GCGAACAACUCACAUGCAAACC 22 13384
BCLllA-12719 - UGCGAACAACUCACAUGCAAACC 23 13385
BCLllA-12720 - UUGCGAACAACUCACAUGCAAACC 24 13386
BCLllA-12721 - GGGGAGAGCCGUGGGACC 18 13387
BCLllA-12722 - CGGGGAGAGCCGUGGGACC 19 13388
BCLllA-10070 - ACGGGGAGAGCCGUGGGACC 20 13389
BCLllA-12723 - GACGGGGAGAGCCGUGGGACC 21 13390
BCLllA-12724 - CGACGGGGAGAGCCGUGGGACC 22 13391
BCLllA-12725 - GCGACGGGGAGAGCCGUGGGACC 23 13392
BCLllA-12726 - GGCGACGGGGAGAGCCGUGGGACC 24 13393
BCLllA-12727 - UCGGCCUUGGGGGCGCCC 18 13394
BCLllA-12728 - CUCGGCCUUGGGGGCGCCC 19 13395
BCLllA-12729 - GCUCGGCCUUGGGGGCGCCC 20 13396
BCLllA-12730 - GGCUCGGCCUUGGGGGCGCCC 21 13397
BCLllA-12731 - UGGCUCGGCCUUGGGGGCGCCC 22 13398
BCLllA-12732 - CUGGCUCGGCCUUGGGGGCGCCC 23 13399
BCLllA-12733 - CCUGGCUCGGCCUUGGGGGCGCCC 24 13400
BCLllA-12734 - GUCUAAAAAACGAUUCCC 18 13401
BCLllA-12735 - AGUCUAAAAAACGAUUCCC 19 13402
BCLllA-10082 - AAGUCUAAAAAACGAUUCCC 20 13403
BCLllA-12736 - CAAGUCUAAAAAACGAUUCCC 21 13404
BCLllA-12737 - ACAAGUCUAAAAAACGAUUCCC 22 13405
BCLllA-12738 - UACAAGUCUAAAAAACGAUUCCC 23 13406
BCLllA-12739 - GUACAAGUCUAAAAAACGAUUCCC 24 13407
BCLllA-12740 - GCCCGCGCUUCCCCAGCC 18 13408
BCLllA-12741 - CGCCCGCGCUUCCCCAGCC 19 13409
BCLllA-10084 - CCGCCCGCGCUUCCCCAGCC 20 13410
BCLllA-12742 - UCCGCCCGCGCUUCCCCAGCC 21 13411
BCLllA-12743 - CUCCGCCCGCGCUUCCCCAGCC 22 13412
BCLllA-12744 - CCUCCGCCCGCGCUUCCCCAGCC 23 13413
BCLllA-12745 - CCCUCCGCCCGCGCUUCCCCAGCC 24 13414
BCLllA-12746 - AGUUUCCCGAGCGCAGCC 18 13415
BCLllA-12747 - A AG UUUCCCGAG CG C AG CC 19 13416
BCLllA-12748 - AAAGUUUCCCGAGCGCAGCC 20 13417
BCLllA-12749 - CAAAGUUUCCCGAGCGCAGCC 21 13418 BCLllA-12750 - GCAAAGUUUCCCGAGCGCAGCC 22 13419
BCLllA-12751 - GGCAAAGUUUCCCGAGCGCAGCC 23 13420
BCLllA-12752 - GGGCAAAGUUUCCCGAGCGCAGCC 24 13421
BCLllA-12753 - GCGGCGACGGGGAGAGCC 18 13422
BCLllA-12754 - CGCGGCGACGGGGAGAGCC 19 13423
BCLllA-12755 - CCGCGGCGACGGGGAGAGCC 20 13424
BCLllA-12756 - GCCGCGGCGACGGGGAGAGCC 21 13425
BCLllA-12757 - GGCCGCGGCGACGGGGAGAGCC 22 13426
BCLllA-12758 - GGGCCGCGGCGACGGGGAGAGCC 23 13427
BCLllA-12759 - GGGGCCGCGGCGACGGGGAGAGCC 24 13428
BCLllA-12760 - CCGGUCCCUGGCUCGGCC 18 13429
BCLllA-12761 - CCCGGUCCCUGGCUCGGCC 19 13430
BCLllA-12762 - UCCCGGUCCCUGGCUCGGCC 20 13431
BCLllA-12763 - CCAGGCCGCGCGGGCUCC 18 13432
BCLllA-12764 - UCCAGGCCGCGCGGGCUCC 19 13433
BCLllA-10091 - UUCCAGGCCGCGCGGGCUCC 20 13434
BCLllA-12765 - UUUCCAGGCCGCGCGGGCUCC 21 13435
BCLllA-12766 - CUUUCCAGGCCGCGCGGGCUCC 22 13436
BCLllA-12767 - UCUUUCCAGGCCGCGCGGGCUCC 23 13437
BCLllA-12768 - CUCUUUCCAGGCCGCGCGGGCUCC 24 13438
BCLllA-12769 - UUCUUUGCUGUCCUCUCC 18 13439
BCLllA-12770 - UUUCUUUGCUGUCCUCUCC 19 13440
BCLllA-12771 - UUUUCUUUGCUGUCCUCUCC 20 13441
BCLllA-12772 - UUUUUCUUUGCUGUCCUCUCC 21 13442
BCLllA-12773 - AUUUUUCUUUGCUGUCCUCUCC 22 13443
BCLllA-12774 - GAUUUUUCUUUGCUGUCCUCUCC 23 13444
BCLllA-12775 - UGAUUUUUCUUUGCUGUCCUCUCC 24 13445
BCLllA-12776 - CCCGGCGCUCCUGAGUCC 18 13446
BCLllA-12777 - CCCCGGCGCUCCUGAGUCC 19 13447
BCLllA-12778 - CCCCCGGCGCUCCUGAGUCC 20 13448
BCLllA-12779 - GCCCCCGGCGCUCCUGAGUCC 21 13449
BCLllA-12780 - GGCCCCCGGCGCUCCUGAGUCC 22 13450
BCLllA-12781 - GGGCCCCCGGCGCUCCUGAGUCC 23 13451
BCLllA-12782 - GGGGCCCCCGGCGCUCCUGAGUCC 24 13452
BCLllA-12783 - GUACGGAGGAGGGUGUCC 18 13453
BCLllA-12784 - CGUACGGAGGAGGGUGUCC 19 13454
BCLllA-10094 - GCGUACGGAGGAGGGUGUCC 20 13455
BCLllA-12785 - UGCGUACGGAGGAGGGUGUCC 21 13456
BCLllA-12786 - GUGCGUACGGAGGAGGGUGUCC 22 13457
BCLllA-12787 - UGUGCGUACGGAGGAGGGUGUCC 23 13458
BCLllA-12788 - GUGUGCGUACGGAGGAGGGUGUCC 24 13459
BCLllA-12789 - AGUCUAAAAAACGAUUCC 18 13460 BCLllA-12790 - AAGUCUAAAAAACGAUUCC 19 13461
BCLllA-10095 - CAAGUCUAAAAAACGAUUCC 20 13462
BCLllA-12791 - ACAAGUCUAAAAAACGAUUCC 21 13463
BCLllA-12792 - UACAAGUCUAAAAAACGAUUCC 22 13464
BCLllA-12793 - GU ACAAGUCUAAAAAACGAUUCC 23 13465
BCLllA-12794 - AGUACAAGUCUAAAAAACGAUUCC 24 13466
BCLllA-12795 - CGCCCGCGCUUCCCCAGC 18 13467
BCLllA-12796 - CCGCCCGCGCUUCCCCAGC 19 13468
BCLllA-12797 - UCCGCCCGCGCUUCCCCAGC 20 13469
BCLllA-12798 - CUCCGCCCGCGCUUCCCCAGC 21 13470
BCLllA-12799 - CCUCCGCCCGCGCUUCCCCAGC 22 13471
BCLllA-12800 - CCCUCCGCCCGCGCUUCCCCAGC 23 13472
BCLllA-12801 - UCCCUCCGCCCGCGCUUCCCCAGC 24 13473
BCLllA-12802 - CACGGUCAAGUGUGCAGC 18 13474
BCLllA-12803 - UCACGGUCAAGUGUGCAGC 19 13475
BCLllA-10100 - CUCACGGUCAAGUGUGCAGC 20 13476
BCLllA-12804 - GCUCACGGUCAAGUGUGCAGC 21 13477
BCLllA-12805 - CGCUCACGGUCAAGUGUGCAGC 22 13478
BCLllA-12806 - GCGCUCACGGUCAAGUGUGCAGC 23 13479
BCLllA-12807 - CGCGCUCACGGUCAAGUGUGCAGC 24 13480
BCLllA-12808 - CCCCUGGCGUCCACACGC 18 13481
BCLllA-12809 - GCCCCUGGCGUCCACACGC 19 13482
BCLllA-10103 - GGCCCCUGGCGUCCACACGC 20 13483
BCLllA-12810 - CGGCCCCUGGCGUCCACACGC 21 13484
BCLllA-12811 - UCGGCCCCUGGCGUCCACACGC 22 13485
BCLllA-12812 - UUCGGCCCCUGGCGUCCACACGC 23 13486
BCLllA-12813 - CUUCGGCCCCUGGCGUCCACACGC 24 13487
BCLllA-12814 - CCCCUCUUUCCAGGCCGC 18 13488
BCLllA-12815 - UCCCCUCUUUCCAGGCCGC 19 13489
BCLllA-12816 - GUCCCCUCUUUCCAGGCCGC 20 13490
BCLllA-12817 - GGUCCCCUCUUUCCAGGCCGC 21 13491
BCLllA-12818 - CGGUCCCCUCUUUCCAGGCCGC 22 13492
BCLllA-12819 - CCGGUCCCCUCUUUCCAGGCCGC 23 13493
BCLllA-12820 - CCCGGUCCCCUCUUUCCAGGCCGC 24 13494
BCLllA-12821 - GCCGCCUUUUGUUCCGGC 18 13495
BCLllA-12822 - UGCCGCCUUUUGUUCCGGC 19 13496
BCLllA-12823 - CUGCCGCCUUUUGUUCCGGC 20 13497
BCLllA-12824 - ACUGCCGCCUUUUGUUCCGGC 21 13498
BCLllA-12825 - CACUGCCGCCUUUUGUUCCGGC 22 13499
BCLllA-12826 - GCACUGCCGCCUUUUGUUCCGGC 23 13500
BCLllA-12827 - GGCACUGCCGCCUUUUGUUCCGGC 24 13501
BCLllA-12828 - AGCGAGCGCGGCGGCGGC 18 13502 BCLllA-12829 - GAGCGAGCGCGGCGGCGGC 19 13503
BCLllA-10114 - GGAGCGAGCGCGGCGGCGGC 20 13504
BCLllA-12830 - GGGAGCGAGCGCGGCGGCGGC 21 13505
BCLllA-12831 - GGGGAGCGAGCGCGGCGGCGGC 22 13506
BCLllA-12832 - CGGGGAGCGAGCGCGGCGGCGGC 23 13507
BCLllA-12833 - GCGGGGAGCGAGCGCGGCGGCGGC 24 13508
BCLllA-12834 - CCGAGCGCAGCCGCGGGC 18 13509
BCLllA-12835 - CCCGAGCGCAGCCGCGGGC 19 13510
BCLllA-12836 - UCCCGAGCGCAGCCGCGGGC 20 13511
BCLllA-12837 - UUCCCGAGCGCAGCCGCGGGC 21 13512
BCLllA-12838 - UUUCCCGAGCGCAGCCGCGGGC 22 13513
BCLllA-12839 - GUUUCCCGAGCGCAGCCGCGGGC 23 13514
BCLllA-12840 - AGUUUCCCGAGCGCAGCCGCGGGC 24 13515
BCLllA-12841 - UCCAGGCCGCGCGGGCUC 18 13516
BCLllA-12842 - UUCCAGGCCGCGCGGGCUC 19 13517
BCLllA-12843 - UUUCCAGGCCGCGCGGGCUC 20 13518
BCLllA-12844 - CUUUCCAGGCCGCGCGGGCUC 21 13519
BCLllA-12845 - UCUUUCCAGGCCGCGCGGGCUC 22 13520
BCLllA-12846 - CUCUUUCCAGGCCGCGCGGGCUC 23 13521
BCLllA-12847 - CCUCUUUCCAGGCCGCGCGGGCUC 24 13522
BCLllA-12848 - UCCUGAGUCCGCGGAGUC 18 13523
BCLllA-12849 - CUCCUGAGUCCGCGGAGUC 19 13524
BCLllA-10128 - GCUCCUGAGUCCGCGGAGUC 20 13525
BCLllA-12850 - CGCUCCUGAGUCCGCGGAGUC 21 13526
BCLllA-12851 - GCGCUCCUGAGUCCGCGGAGUC 22 13527
BCLllA-12852 - GGCGCUCCUGAGUCCGCGGAGUC 23 13528
BCLllA-12853 - CGGCGCUCCUGAGUCCGCGGAGUC 24 13529
BCLllA-12854 - CGUACGGAGGAGGGUGUC 18 13530
BCLllA-12855 - GCGUACGGAGGAGGGUGUC 19 13531
BCLllA-10130 - UGCGUACGGAGGAGGGUGUC 20 13532
BCLllA-12856 - GUGCGUACGGAGGAGGGUGUC 21 13533
BCLllA-12857 - UGUGCGUACGGAGGAGGGUGUC 22 13534
BCLllA-12858 - GUGUGCGUACGGAGGAGGGUGUC 23 13535
BCLllA-12859 - GGUGUGCGUACGGAGGAGGGUGUC 24 13536
BCLllA-12860 - AAGUCUAAAAAACGAUUC 18 13537
BCLllA-12861 - CAAGUCUAAAAAACGAUUC 19 13538
BCLllA-12862 - ACAAGUCUAAAAAACGAUUC 20 13539
BCLllA-12863 - UACAAGUCUAAAAAACGAUUC 21 13540
BCLllA-12864 - GUACAAGUCUAAAAAACGAUUC 22 13541
BCLllA-12865 - AG UACAAG U CU AAAAAACG AU U C 23 13542
BCLllA-12866 - GAGUACAAGUCUAAAAAACGAUUC 24 13543
BCLllA-12867 - CUCCUCGGGCAAAGUUUC 18 13544 BCLllA-12868 - UCUCCUCGGGCAAAGUUUC 19 13545
BCLllA-12869 - CUCUCCUCGGGCAAAGUUUC 20 13546
BCLllA-12870 - CCUCUCCUCGGGCAAAGUUUC 21 13547
BCLllA-12871 - UCCUCUCCUCGGGCAAAGUUUC 22 13548
BCLllA-12872 - GUCCUCUCCUCGGGCAAAGUUUC 23 13549
BCLllA-12873 - UGUCCUCUCCUCGGGCAAAGUUUC 24 13550
BCLllA-12874 - UCACGGUCAAGUGUGCAG 18 13551
BCLllA-12875 - CUCACGGUCAAGUGUGCAG 19 13552
BCLllA-10145 - GCUCACGGUCAAGUGUGCAG 20 13553
BCLllA-12876 - CGCUCACGGUCAAGUGUGCAG 21 13554
BCLllA-12877 - GCGCUCACGGUCAAGUGUGCAG 22 13555
BCLllA-12878 - CGCGCUCACGGUCAAGUGUGCAG 23 13556
BCLllA-12879 - GCGCGCUCACGGUCAAGUGUGCAG 24 13557
BCLllA-12880 - UUCCCGGGGAGAAAAGAG 18 13558
BCLllA-12881 - AUUCCCGGGGAGAAAAGAG 19 13559
BCLllA-12882 - GAUUCCCGGGGAGAAAAGAG 20 13560
BCLllA-12883 - CGAUUCCCGGGGAGAAAAGAG 21 13561
BCLllA-12884 - ACGAUUCCCGGGGAGAAAAGAG 22 13562
BCLllA-12885 - AACGAUUCCCGGGGAGAAAAGAG 23 13563
BCLllA-12886 - AAACGAUUCCCGGGGAGAAAAGAG 24 13564
BCLllA-12887 - GCUCCUGAGUCCGCGGAG 18 13565
BCLllA-12888 - CGCUCCUGAGUCCGCGGAG 19 13566
BCLllA-12889 - GCGCUCCUGAGUCCGCGGAG 20 13567
BCLllA-12890 - GGCGCUCCUGAGUCCGCGGAG 21 13568
BCLllA-12891 - CGGCGCUCCUGAGUCCGCGGAG 22 13569
BCLllA-12892 - CCGGCGCUCCUGAGUCCGCGGAG 23 13570
BCLllA-12893 - CCCGGCGCUCCUGAGUCCGCGGAG 24 13571
BCLllA-12894 - AGUCCGCGGAGUCGGGAG 18 13572
BCLllA-12895 - GAGUCCGCGGAGUCGGGAG 19 13573
BCLllA-10150 - UGAGUCCGCGGAGUCGGGAG 20 13574
BCLllA-12896 - CUGAGUCCGCGGAGUCGGGAG 21 13575
BCLllA-12897 - CCUGAGUCCGCGGAGUCGGGAG 22 13576
BCLllA-12898 - UCCUGAGUCCGCGGAGUCGGGAG 23 13577
BCLllA-12899 - CUCCUGAGUCCGCGGAGUCGGGAG 24 13578
BCLllA-12900 - CGCGGCGGCGGCGGGGAG 18 13579
BCLllA-12901 - GCGCGGCGGCGGCGGGGAG 19 13580
BCLllA-10152 - AGCGCGGCGGCGGCGGGGAG 20 13581
BCLllA-12902 - GAGCGCGGCGGCGGCGGGGAG 21 13582
BCLllA-12903 - CGAGCGCGGCGGCGGCGGGGAG 22 13583
BCLllA-12904 - GCGAGCGCGGCGGCGGCGGGGAG 23 13584
BCLllA-12905 - AGCGAGCGCGGCGGCGGCGGGGAG 24 13585
BCLllA-11434 - CGCGUGUGUGGGGGGGAG 18 13586 BCLllA-11435 - CCGCGUGUGUGGGGGGGAG 19 13587
BCLllA-11436 - UCCGCGUGUGUGGGGGGGAG 20 13588
BCLllA-11437 - GUCCGCGUGUGUGGGGGGGAG 21 13589
BCLllA-11438 - AGUCCGCGUGUGUGGGGGGGAG 22 13590
BCLllA-11439 - GAGUCCGCGUGUGUGGGGGGGAG 23 13591
BCLllA-11440 - AGAGUCCGCGUGUGUGGGGGGGAG 24 13592
BCLllA-12906 - GCCCCUGGCGUCCACACG 18 13593
BCLllA-12907 - GGCCCCUGGCGUCCACACG 19 13594
BCLllA-10156 - CGGCCCCUGGCGUCCACACG 20 13595
BCLllA-12908 - UCGGCCCCUGGCGUCCACACG 21 13596
BCLllA-12909 - UUCGGCCCCUGGCGUCCACACG 22 13597
BCLllA-12910 - CUUCGGCCCCUGGCGUCCACACG 23 13598
BCLllA-12911 - ACUUCGGCCCCUGGCGUCCACACG 24 13599
BCLllA-12912 - AGAGGGGCCGCGGCGACG 18 13600
BCLllA-12913 - GAGAGGGGCCGCGGCGACG 19 13601
BCLllA-10158 - GGAGAGGGGCCGCGGCGACG 20 13602
BCLllA-12914 - GGGAGAGGGGCCGCGGCGACG 21 13603
BCLllA-12915 - CGGGAGAGGGGCCGCGGCGACG 22 13604
BCLllA-12916 - UCGGGAGAGGGGCCGCGGCGACG 23 13605
BCLllA-12917 - GUCGGGAGAGGGGCCGCGGCGACG 24 13606
BCLllA-12918 - GAAGUGGGUGUGCGUACG 18 13607
BCLllA-12919 - GGAAGUGGGUGUGCGUACG 19 13608
BCLllA-12920 - GGGAAGUGGGUGUGCGUACG 20 13609
BCLllA-12921 - GGGGAAGUGGGUGUGCGUACG 21 13610
BCLllA-12922 - AGGGGAAGUGGGUGUGCGUACG 22 13611
BCLllA-12923 - GAGGGGAAGUGGGUGUGCGUACG 23 13612
BCLllA-12924 - GGAGGGGAAGUGGGUGUGCGUACG 24 13613
BCLllA-12925 - U CU AAAAAACG AU U CCCG 18 13614
BCLllA-12926 - GUCUAAAAAACGAUUCCCG 19 13615
BCLllA-10164 - AGUCUAAAAAACGAUUCCCG 20 13616
BCLllA-12927 - AAGUCUAAAAAACGAUUCCCG 21 13617
BCLllA-12928 - CAAGUCUAAAAAACGAUUCCCG 22 13618
BCLllA-12929 - ACAAGUCUAAAAAACGAUUCCCG 23 13619
BCLllA-12930 - UACAAGUCUAAAAAACGAUUCCCG 24 13620
BCLllA-12931 - CGGCGACGGGGAGAGCCG 18 13621
BCLllA-12932 - GCGGCGACGGGGAGAGCCG 19 13622
BCLllA-10166 - CGCGGCGACGGGGAGAGCCG 20 13623
BCLllA-12933 - CCGCGGCGACGGGGAGAGCCG 21 13624
BCLllA-12934 - GCCGCGGCGACGGGGAGAGCCG 22 13625
BCLllA-12935 - GGCCGCGGCGACGGGGAGAGCCG 23 13626
BCLllA-12936 - GGGCCGCGGCGACGGGGAGAGCCG 24 13627
BCLllA-12937 - CCCUGGCGUCCACACGCG 18 13628 BCLllA-12938 - CCCCUGGCGUCCACACGCG 19 13629
BCLllA-10175 - GCCCCUGGCGUCCACACGCG 20 13630
BCLllA-12939 - GGCCCCUGGCGUCCACACGCG 21 13631
BCLllA-12940 - CGGCCCCUGGCGUCCACACGCG 22 13632
BCLllA-12941 - UCGGCCCCUGGCGUCCACACGCG 23 13633
BCLllA-12942 - UUCGGCCCCUGGCGUCCACACGCG 24 13634
BCLllA-12943 - GGGAGAGGGGCCGCGGCG 18 13635
BCLllA-12944 - CGGGAGAGGGGCCGCGGCG 19 13636
BCLllA-12945 - UCGGGAGAGGGGCCGCGGCG 20 13637
BCLllA-12946 - GUCGGGAGAGGGGCCGCGGCG 21 13638
BCLllA-12947 - AGUCGGGAGAGGGGCCGCGGCG 22 13639
BCLllA-12948 - GAGUCGGGAGAGGGGCCGCGGCG 23 13640
BCLllA-12949 - GGAGUCGGGAGAGGGGCCGCGGCG 24 13641
BCLllA-12950 - GGAGCGAGCGCGGCGGCG 18 13642
BCLllA-12951 - GGGAGCGAGCGCGGCGGCG 19 13643
BCLllA-12952 - GGGGAGCGAGCGCGGCGGCG 20 13644
BCLllA-12953 - CGGGGAGCGAGCGCGGCGGCG 21 13645
BCLllA-12954 - GCGGGGAGCGAGCGCGGCGGCG 22 13646
BCLllA-12955 - CGCGGGGAGCGAGCGCGGCGGCG 23 13647
BCLllA-12956 - ACGCGGGGAGCGAGCGCGGCGGCG 24 13648
BCLllA-12957 - GCGAGCGCGGCGGCGGCG 18 13649
BCLllA-12958 - AGCGAGCGCGGCGGCGGCG 19 13650
BCLllA-10179 - GAGCGAGCGCGGCGGCGGCG 20 13651
BCLllA-12959 - GGAGCGAGCGCGGCGGCGGCG 21 13652
BCLllA-12960 - GGGAGCGAGCGCGGCGGCGGCG 22 13653
BCLllA-12961 - GGGGAGCGAGCGCGGCGGCGGCG 23 13654
BCLllA-12962 - CGGGGAGCGAGCGCGGCGGCGGCG 24 13655
BCLllA-12963 - GCCGUGGGACCGGGAAGG 18 13656
BCLllA-12964 - AGCCGUGGGACCGGGAAGG 19 13657
BCLllA-12965 - GAGCCGUGGGACCGGGAAGG 20 13658
BCLllA-12966 - AGAGCCGUGGGACCGGGAAGG 21 13659
BCLllA-12967 - GAGAGCCGUGGGACCGGGAAGG 22 13660
BCLllA-12968 - GGAGAGCCGUGGGACCGGGAAGG 23 13661
BCLllA-12969 - GGGAGAGCCGUGGGACCGGGAAGG 24 13662
BCLllA-12970 - AGAAAAUGGGGGGGUAGG 18 13663
BCLllA-12971 - AAGAAAAUGGGGGGGUAGG 19 13664
BCLllA-12972 - UAAGAAAAUGGGGGGGUAGG 20 13665
BCLllA-12973 - GUAAGAAAAUGGGGGGGUAGG 21 13666
BCLllA-12974 - CGUAAGAAAAUGGGGGGGUAGG 22 13667
BCLllA-12975 - CCGUAAGAAAAUGGGGGGGUAGG 23 13668
BCLllA-12976 - ACCGUAAGAAAAUGGGGGGGUAGG 24 13669
BCLllA-12977 - AAGUGGGUGUGCGUACGG 18 13670 BCLllA-12978 - GAAGUGGGUGUGCGUACGG 19 13671
BCLllA-10191 - GGAAGUGGGUGUGCGUACGG 20 13672
BCLllA-12979 - GGGAAGUGGGUGUGCGUACGG 21 13673
BCLllA-12980 - GGGGAAGUGGGUGUGCGUACGG 22 13674
BCLllA-12981 - AGGGGAAGUGGGUGUGCGUACGG 23 13675
BCLllA-12982 - GAGGGGAAGUGGGUGUGCGUACGG 24 13676
BCLllA-12983 - CGGUCAAGUGUGCAGCGG 18 13677
BCLllA-12984 - ACGGUCAAGUGUGCAGCGG 19 13678
BCLllA-12985 - CACGGUCAAGUGUGCAGCGG 20 13679
BCLllA-12986 - UCACGGUCAAGUGUGCAGCGG 21 13680
BCLllA-12987 - CUCACGGUCAAGUGUGCAGCGG 22 13681
BCLllA-12988 - GCUCACGGUCAAGUGUGCAGCGG 23 13682
BCLllA-12989 - CGCUCACGGUCAAGUGUGCAGCGG 24 13683
BCLllA-12990 - GAGCGAGCGCGGCGGCGG 18 13684
BCLllA-12991 - GGAGCGAGCGCGGCGGCGG 19 13685
BCLllA-10196 - GGGAGCGAGCGCGGCGGCGG 20 13686
BCLllA-12992 - GGGGAGCGAGCGCGGCGGCGG 21 13687
BCLllA-12993 - CGGGGAGCGAGCGCGGCGGCGG 22 13688
BCLllA-12994 - GCGGGGAGCGAGCGCGGCGGCGG 23 13689
BCLllA-12995 - CGCGGGGAGCGAGCGCGGCGGCGG 24 13690
BCLllA-12996 - CUGAGUCCGCGGAGUCGG 18 13691
BCLllA-12997 - CCUGAGUCCGCGGAGUCGG 19 13692
BCLllA-12998 - UCCUGAGUCCGCGGAGUCGG 20 13693
BCLllA-12999 - CUCCUGAGUCCGCGGAGUCGG 21 13694
BCLllA-13000 - GCUCCUGAGUCCGCGGAGUCGG 22 13695
BCLllA-13001 - CGCUCCUGAGUCCGCGGAGUCGG 23 13696
BCLllA-13002 - GCGCUCCUGAGUCCGCGGAGUCGG 24 13697
BCLllA-13003 - GAAAAUGGGGGGGUAGGG 18 13698
BCLllA-13004 - AGAAAAUGGGGGGGUAGGG 19 13699
BCLllA-10200 - AAGAAAAUGGGGGGGUAGGG 20 13700
BCLllA-13005 - UAAGAAAAUGGGGGGGUAGGG 21 13701
BCLllA-13006 - GUAAGAAAAUGGGGGGGUAGGG 22 13702
BCLllA-13007 - CGUAAGAAAAUGGGGGGGUAGGG 23 13703
BCLllA-13008 - CCGUAAGAAAAUGGGGGGGUAGGG 24 13704
BCLllA-13009 - AGGGGCCGCGGCGACGGG 18 13705
BCLllA-13010 - GAGGGGCCGCGGCGACGGG 19 13706
BCLllA-13011 - AGAGGGGCCGCGGCGACGGG 20 13707
BCLllA-13012 - GAGAGGGGCCGCGGCGACGGG 21 13708
BCLllA-13013 - GGAGAGGGGCCGCGGCGACGGG 22 13709
BCLllA-13014 - GGGAGAGGGGCCGCGGCGACGGG 23 13710
BCLllA-13015 - CGGGAGAGGGGCCGCGGCGACGGG 24 13711
BCLllA-13016 - GAGAGCCGUGGGACCGGG 18 13712 BCLllA-13017 - GGAGAGCCGUGGGACCGGG 19 13713
BCLllA-13018 - GGGAGAGCCGUGGGACCGGG 20 13714
BCLllA-13019 - GGGGAGAGCCGUGGGACCGGG 21 13715
BCLllA-13020 - CGGGGAGAGCCGUGGGACCGGG 22 13716
BCLllA-13021 - ACGGGGAGAGCCGUGGGACCGGG 23 13717
BCLllA-13022 - GACGGGGAGAGCCGUGGGACCGGG 24 13718
BCLllA-13023 - UAAAAAACGAUUCCCGGG 18 13719
BCLllA-13024 - CUAAAAAACGAUUCCCGGG 19 13720
BCLllA-13025 - UCUAAAAAACGAUUCCCGGG 20 13721
BCLllA-13026 - GUCUAAAAAACGAUUCCCGGG 21 13722
BCLllA-13027 - AGUCUAAAAAACGAUUCCCGGG 22 13723
BCLllA-13028 - AAGUCUAAAAAACGAUUCCCGGG 23 13724
BCLllA-13029 - CAAGUCUAAAAAACGAUUCCCGGG 24 13725
BCLllA-13030 - GGUCAAGUGUGCAGCGGG 18 13726
BCLllA-13031 - CGGUCAAGUGUGCAGCGGG 19 13727
BCLllA-10202 - ACGGUCAAGUGUGCAGCGGG 20 13728
BCLllA-13032 - CACGGUCAAGUGUGCAGCGGG 21 13729
BCLllA-13033 - UCACGGUCAAGUGUGCAGCGGG 22 13730
BCLllA-13034 - CUCACGGUCAAGUGUGCAGCGGG 23 13731
BCLllA-13035 - GCUCACGGUCAAGUGUGCAGCGGG 24 13732
BCLllA-13036 - GAGCGCGGCGGCGGCGGG 18 13733
BCLllA-13037 - CGAGCGCGGCGGCGGCGGG 19 13734
BCLllA-13038 - GCGAGCGCGGCGGCGGCGGG 20 13735
BCLllA-13039 - AGCGAGCGCGGCGGCGGCGGG 21 13736
BCLllA-13040 - GAGCGAGCGCGGCGGCGGCGGG 22 13737
BCLllA-13041 - GGAGCGAGCGCGGCGGCGGCGGG 23 13738
BCLllA-13042 - GGGAGCGAGCGCGGCGGCGGCGGG 24 13739
BCLllA-13043 - AGCGCGGCGGCGGCGGGG 18 13740
BCLllA-13044 - GAGCGCGGCGGCGGCGGGG 19 13741
BCLllA-10206 - CGAGCGCGGCGGCGGCGGGG 20 13742
BCLllA-13045 - GCGAGCGCGGCGGCGGCGGGG 21 13743
BCLllA-13046 - AGCGAGCGCGGCGGCGGCGGGG 22 13744
BCLllA-13047 - GAGCGAGCGCGGCGGCGGCGGGG 23 13745
BCLllA-13048 - GGAGCGAGCGCGGCGGCGGCGGGG 24 13746
BCLllA-13049 - CGUAAGAAAAUGGGGGGG 18 13747
BCLllA-13050 - CCGUAAGAAAAUGGGGGGG 19 13748
BCLllA-13051 - ACCGUAAGAAAAUGGGGGGG 20 13749
BCLllA-13052 - CACCGUAAGAAAAUGGGGGGG 21 13750
BCLllA-13053 - UCACCGUAAGAAAAUGGGGGGG 22 13751
BCLllA-13054 - CUCACCGUAAGAAAAUGGGGGGG 23 13752
BCLllA-13055 - ACUCACCGUAAGAAAAUGGGGGGG 24 13753
BCLllA-13056 - CACAUGCAAACCUGGGGG 18 13754 BCLllA-13057 - UCACAUGCAAACCUGGGGG 19 13755
BCLllA-10210 - CUCACAUGCAAACCUGGGGG 20 13756
BCLllA-13058 - ACUCACAUGCAAACCUGGGGG 21 13757
BCLllA-13059 - AACUCACAUGCAAACCUGGGGG 22 13758
BCLllA-13060 - CAACUCACAUGCAAACCUGGGGG 23 13759
BCLllA-13061 - ACAACUCACAUGCAAACCUGGGGG 24 13760
BCLllA-13062 - UCACAUGCAAACCUGGGG 18 13761
BCLllA-13063 - CUCACAUGCAAACCUGGGG 19 13762
BCLllA-13064 - ACUCACAUGCAAACCUGGGG 20 13763
BCLllA-13065 - AACUCACAUGCAAACCUGGGG 21 13764
BCLllA-13066 - CAACUCACAUGCAAACCUGGGG 22 13765
BCLllA-13067 - ACAACUCACAUGCAAACCUGGGG 23 13766
BCLllA-13068 - AACAACUCACAUGCAAACCUGGGG 24 13767
BCLllA-11486 - GAGUCCGCGUGUGUGGGG 18 13768
BCLllA-11487 - AGAGUCCGCGUGUGUGGGG 19 13769
BCLllA-9577 - UAGAGUCCGCGUGUGUGGGG 20 13770
BCLllA-11488 - UUAGAGUCCGCGUGUGUGGGG 21 13771
BCLllA-11489 - UUUAGAGUCCGCGUGUGUGGGG 22 13772
BCLllA-11490 - UUUUAGAGUCCGCGUGUGUGGGG 23 13773
BCLllA-11491 - AUUUUAGAGUCCGCGUGUGUGGGG 24 13774
BCLllA-11492 - AGAGUCCGCGUGUGUGGG 18 13775
BCLllA-11493 - UAGAGUCCGCGUGUGUGGG 19 13776
BCLllA-9769 - UUAGAGUCCGCGUGUGUGGG 20 13777
BCLllA-11494 - UUUAGAGUCCGCGUGUGUGGG 21 13778
BCLllA-11495 - UUUUAGAGUCCGCGUGUGUGGG 22 13779
BCLllA-11496 - AUUUUAGAGUCCGCGUGUGUGGG 23 13780
BCLllA-11497 - CAUUUUAGAGUCCGCGUGUGUGGG 24 13781
BCLllA-13069 - CCUGGGGGUGGGAGCUGG 18 13782
BCLllA-13070 - ACCUGGGGGUGGGAGCUGG 19 13783
BCLllA-10217 - AACCUGGGGGUGGGAGCUGG 20 13784
BCLllA-13071 - AAACCUGGGGGUGGGAGCUGG 21 13785
BCLllA-13072 - CAAACCUGGGGGUGGGAGCUGG 22 13786
BCLllA-13073 - GCAAACCUGGGGGUGGGAGCUGG 23 13787
BCLllA-13074 - UGCAAACCUGGGGGUGGGAGCUGG 24 13788
BCLllA-11498 - UAGAGUCCGCGUGUGUGG 18 13789
BCLllA-11499 - UUAGAGUCCGCGUGUGUGG 19 13790
BCLllA-9578 - UUUAGAGUCCGCGUGUGUGG 20 13791
BCLllA-11500 - UUUUAGAGUCCGCGUGUGUGG 21 13792
BCLllA-11501 - AUUUUAGAGUCCGCGUGUGUGG 22 13793
BCLllA-11502 - CAUUUUAGAGUCCGCGUGUGUGG 23 13794
BCLllA-11503 - UCAUUUUAGAGUCCGCGUGUGUGG 24 13795
BCLllA-13075 - ACUCACCGUAAGAAAAUG 18 13796 BCLllA-13076 - CACUCACCGUAAGAAAAUG 19 13797
BCLllA-10221 - CCACUCACCGUAAGAAAAUG 20 13798
BCLllA-13077 - CCCACU CACCG U AAG AAAAUG 21 13799
BCLllA-13078 - U CCCACU CACCG U AAG AAAAUG 22 13800
BCLllA-13079 - U U CCCACU CACCG U AAG AAAAUG 23 13801
BCLllA-13080 - CUUCCCACUCACCGUAAGAAAAUG 24 13802
BCLllA-13081 - AG U G AG AAAG U G G C AC U G 18 13803
BCLllA-13082 - UAGUGAGAAAGUGGCACUG 19 13804
BCLllA-10222 - AUAGUGAGAAAGUGGCACUG 20 13805
BCLllA-13083 - AAUAGUGAGAAAGUGGCACUG 21 13806
BCLllA-13084 - CAAUAGUGAGAAAGUGGCACUG 22 13807
BCLllA-13085 - ACAAUAGUGAGAAAGUGGCACUG 23 13808
BCLllA-13086 - CACAAUAGUGAGAAAGUGGCACUG 24 13809
BCLllA-13087 - ACCUGGGGGUGGGAGCUG 18 13810
BCLllA-13088 - AACCUGGGGGUGGGAGCUG 19 13811
BCLllA-13089 - AAACCUGGGGGUGGGAGCUG 20 13812
BCLllA-13090 - CAAACCUGGGGGUGGGAGCUG 21 13813
BCLllA-13091 - GCAAACCUGGGGGUGGGAGCUG 22 13814
BCLllA-13092 - UGCAAACCUGGGGGUGGGAGCUG 23 13815
BCLllA-13093 - AUGCAAACCUGGGGGUGGGAGCUG 24 13816
BCLllA-13094 - ACCUCCCCUCGCCCGCUG 18 13817
BCLllA-13095 - CACCUCCCCUCGCCCGCUG 19 13818
BCLllA-10224 - CCACCUCCCCUCGCCCGCUG 20 13819
BCLllA-13096 - CCCACCUCCCCUCGCCCGCUG 21 13820
BCLllA-13097 - UCCCACCUCCCCUCGCCCGCUG 22 13821
BCLllA-13098 - CUCCCACCUCCCCUCGCCCGCUG 23 13822
BCLllA-13099 - CCUCCCACCUCCCCUCGCCCGCUG 24 13823
BCLllA-13100 - UGGGGGUGGGAGCUGGUG 18 13824
BCLllA-13101 - CUGGGGGUGGGAGCUGGUG 19 13825
BCLllA-10228 - CCUGGGGGUGGGAGCUGGUG 20 13826
BCLllA-13102 - ACCUGGGGGUGGGAGCUGGUG 21 13827
BCLllA-13103 - AACCUGGGGGUGGGAGCUGGUG 22 13828
BCLllA-13104 - AAACCUGGGGGUGGGAGCUGGUG 23 13829
BCLllA-13105 - CAAACCUGGGGGUGGGAGCUGGUG 24 13830
BCLllA-11518 - UUUUAGAGUCCGCGUGUG 18 13831
BCLllA-11519 - AUUUUAGAGUCCGCGUGUG 19 13832
BCLllA-9581 - CAUUUUAGAGUCCGCGUGUG 20 13833
BCLllA-11520 - UCAUUUUAGAGUCCGCGUGUG 21 13834
BCLllA-11521 - UUCAUUUUAGAGUCCGCGUGUG 22 13835
BCLllA-11522 - UUUCAUUUUAGAGUCCGCGUGUG 23 13836
BCLllA-11523 - CUUUCAUUUUAGAGUCCGCGUGUG 24 13837
BCLllA-11524 - UUAGAGUCCGCGUGUGUG 18 13838 BCLllA-11525 - UUUAGAGUCCGCGUGUGUG 19 13839
BCLllA-9776 - UUUUAGAGUCCGCGUGUGUG 20 13840
BCLllA-11526 - AUUUUAGAGUCCGCGUGUGUG 21 13841
BCLllA-11527 - CAUUUUAGAGUCCGCGUGUGUG 22 13842
BCLllA-11528 - UCAUUUUAGAGUCCGCGUGUGUG 23 13843
BCLllA-11529 - UUCAUUUUAGAGUCCGCGUGUGUG 24 13844
BCLllA-13106 - CACUCACCGUAAGAAAAU 18 13845
BCLllA-13107 - CCACUCACCGUAAGAAAAU 19 13846
BCLllA-10232 - CCCACUCACCGUAAGAAAAU 20 13847
BCLllA-13108 - UCCCACUCACCGUAAGAAAAU 21 13848
BCLllA-13109 - U U CCCACU CACCG UAAGAAAAU 22 13849
BCLllA-13110 - CU U CCCACU CACCG UAAGAAAAU 23 13850
BCLllA-13111 - GCU U CCCACU CACCG UAAGAAAAU 24 13851
BCLllA-13112 - CGCUGCGGAGCUGUAACU 18 13852
BCLllA-13113 - CCGCUGCGGAGCUGUAACU 19 13853
BCLllA-10233 - CCCGCUGCGGAGCUGUAACU 20 13854
BCLllA-13114 - GCCCGCUGCGGAGCUGUAACU 21 13855
BCLllA-13115 - CGCCCGCUGCGGAGCUGUAACU 22 13856
BCLllA-13116 - UCGCCCGCUGCGGAGCUGUAACU 23 13857
BCLllA-13117 - CUCGCCCGCUGCGGAGCUGUAACU 24 13858
BCLllA-13118 - UAGUGAGAAAGUGGCACU 18 13859
BCLllA-13119 - AUAGUGAGAAAGUGGCACU 19 13860
BCLllA-13120 - AAUAGUGAGAAAGUGGCACU 20 13861
BCLllA-13121 - CAAUAGUGAGAAAGUGGCACU 21 13862
BCLllA-13122 - ACAAUAGUGAGAAAGUGGCACU 22 13863
BCLllA-13123 - CACAAUAGUGAGAAAGUGGCACU 23 13864
BCLllA-13124 - CCACAAUAGUGAGAAAGUGGCACU 24 13865
BCLllA-13125 - CGGUCCCUGGCUCGGCCU 18 13866
BCLllA-13126 - CCGGUCCCUGGCUCGGCCU 19 13867
BCLllA-10237 - CCCGGUCCCUGGCUCGGCCU 20 13868
BCLllA-13127 - CACCUCCCCUCGCCCGCU 18 13869
BCLllA-13128 - CCACCUCCCCUCGCCCGCU 19 13870
BCLllA-13129 - CCCACCUCCCCUCGCCCGCU 20 13871
BCLllA-13130 - UCCCACCUCCCCUCGCCCGCU 21 13872
BCLllA-13131 - CUCCCACCUCCCCUCGCCCGCU 22 13873
BCLllA-13132 - CCUCCCACCUCCCCUCGCCCGCU 23 13874
BCLllA-13133 - CCCUCCCACCUCCCCUCGCCCGCU 24 13875
BCLllA-13134 - CGAGCGCAGCCGCGGGCU 18 13876
BCLllA-13135 - CCGAGCGCAGCCGCGGGCU 19 13877
BCLllA-10241 - CCCGAGCGCAGCCGCGGGCU 20 13878
BCLllA-13136 - UCCCGAGCGCAGCCGCGGGCU 21 13879
BCLllA-13137 - UUCCCGAGCGCAGCCGCGGGCU 22 13880 BCLllA-13138 - UUUCCCGAGCGCAGCCGCGGGCU 23 13881
BCLllA-13139 - GUUUCCCGAGCGCAGCCGCGGGCU 24 13882
BCLllA-13140 - CUCCUGAGUCCGCGGAGU 18 13883
BCLllA-13141 - GCUCCUGAGUCCGCGGAGU 19 13884
BCLllA-10243 - CGCUCCUGAGUCCGCGGAGU 20 13885
BCLllA-13142 - GCGCUCCUGAGUCCGCGGAGU 21 13886
BCLllA-13143 - GGCGCUCCUGAGUCCGCGGAGU 22 13887
BCLllA-13144 - CGGCGCUCCUGAGUCCGCGGAGU 23 13888
BCLllA-13145 - CCGGCGCUCCUGAGUCCGCGGAGU 24 13889
BCLllA-13146 - AGUCAUCCCCACAAUAGU 18 13890
BCLllA-13147 - UAGUCAUCCCCACAAUAGU 19 13891
BCLllA-13148 - GUAGUCAUCCCCACAAUAGU 20 13892
BCLllA-13149 - AGUAGUCAUCCCCACAAUAGU 21 13893
BCLllA-13150 - AAGUAGUCAUCCCCACAAUAGU 22 13894
BCLllA-13151 - AAAGUAGUCAUCCCCACAAUAGU 23 13895
BCLllA-13152 - GAAAGUAGUCAUCCCCACAAUAGU 24 13896
BCLllA-13153 - UUGCUUCCCACUCACCGU 18 13897
BCLllA-13154 - GUUGCUUCCCACUCACCGU 19 13898
BCLllA-13155 - GGUUGCUUCCCACUCACCGU 20 13899
BCLllA-13156 - AGGUUGCUUCCCACUCACCGU 21 13900
BCLllA-13157 - GAGGUUGCUUCCCACUCACCGU 22 13901
BCLllA-13158 - GGAGGUUGCUUCCCACUCACCGU 23 13902
BCLllA-13159 - GGGAGGUUGCUUCCCACUCACCGU 24 13903
BCLllA-13160 - GGGGAAGUGGGUGUGCGU 18 13904
BCLllA-13161 - AGGGGAAGUGGGUGUGCGU 19 13905
BCLllA-13162 - GAGGGGAAGUGGGUGUGCGU 20 13906
BCLllA-13163 - GGAGGGGAAGUGGGUGUGCGU 21 13907
BCLllA-13164 - GGGAGGGGAAGUGGGUGUGCGU 22 13908
BCLllA-13165 - GGGGAGGGGAAGUGGGUGUGCGU 23 13909
BCLllA-13166 - CGGGGAGGGGAAGUGGGUGUGCGU 24 13910
BCLllA-13167 - GUAAGAAAAUGGGGGGGU 18 13911
BCLllA-13168 - CGUAAGAAAAUGGGGGGGU 19 13912
BCLllA-10248 - CCGUAAGAAAAUGGGGGGGU 20 13913
BCLllA-13169 - ACCGUAAGAAAAUGGGGGGGU 21 13914
BCLllA-13170 - CACCGUAAGAAAAUGGGGGGGU 22 13915
BCLllA-13171 - UCACCGUAAGAAAAUGGGGGGGU 23 13916
BCLllA-13172 - CUCACCGUAAGAAAAUGGGGGGGU 24 13917
BCLllA-13173 - ACAUGCAAACCUGGGGGU 18 13918
BCLllA-13174 - CACAUGCAAACCUGGGGGU 19 13919
BCLllA-10249 - UCACAUGCAAACCUGGGGGU 20 13920
BCLllA-13175 - CUCACAUGCAAACCUGGGGGU 21 13921
BCLllA-13176 - ACUCACAUGCAAACCUGGGGGU 22 13922 BCLllA-13177 - AACUCACAUGCAAACCUGGGGGU 23 13923
BCLllA-13178 - CAACUCACAUGCAAACCUGGGGGU 24 13924
BCLllA-13179 - CUGGGGGUGGGAGCUGGU 18 13925
BCLllA-13180 - CCUGGGGGUGGGAGCUGGU 19 13926
BCLllA-10250 - ACCUGGGGGUGGGAGCUGGU 20 13927
BCLllA-13181 - AACCUGGGGGUGGGAGCUGGU 21 13928
BCLllA-13182 - AAACCUGGGGGUGGGAGCUGGU 22 13929
BCLllA-13183 - CAAACCUGGGGGUGGGAGCUGGU 23 13930
BCLllA-13184 - GCAAACCUGGGGGUGGGAGCUGGU 24 13931
BCLllA-11572 - AUUUUAGAGUCCGCGUGU 18 13932
BCLllA-11573 - CAUUUUAGAGUCCGCGUGU 19 13933
BCLllA-11574 - UCAUUUUAGAGUCCGCGUGU 20 13934
BCLllA-11575 - UUCAUUUUAGAGUCCGCGUGU 21 13935
BCLllA-11576 - UUUCAUUUUAGAGUCCGCGUGU 22 13936
BCLllA-11577 - CUUUCAUUUUAGAGUCCGCGUGU 23 13937
BCLllA-11578 - UCUUUCAUUUUAGAGUCCGCGUGU 24 13938
BCLllA-13185 - GCGUACGGAGGAGGGUGU 18 13939
BCLllA-13186 - UGCGUACGGAGGAGGGUGU 19 13940
BCLllA-13187 - GUGCGUACGGAGGAGGGUGU 20 13941
BCLllA-13188 - UGUGCGUACGGAGGAGGGUGU 21 13942
BCLllA-13189 - GUGUGCGUACGGAGGAGGGUGU 22 13943
BCLllA-13190 - GGUGUGCGUACGGAGGAGGGUGU 23 13944
BCLllA-13191 - GGGUGUGCGUACGGAGGAGGGUGU 24 13945
BCLllA-11579 - UUUAGAGUCCGCGUGUGU 18 13946
BCLllA-11580 - UUUUAGAGUCCGCGUGUGU 19 13947
BCLllA-9586 - AUUUUAGAGUCCGCGUGUGU 20 13948
BCLllA-11581 - CAUUUUAGAGUCCGCGUGUGU 21 13949
BCLllA-11582 - UCAUUUUAGAGUCCGCGUGUGU 22 13950
BCLllA-11583 - UUCAUUUUAGAGUCCGCGUGUGU 23 13951
BCLllA-11584 - UUUCAUUUUAGAGUCCGCGUGUGU 24 13952
BCLllA-13192 - GACUUGGGCGCUGCCCUU 18 13953
BCLllA-13193 - AGACUUGGGCGCUGCCCUU 19 13954
BCLllA-13194 - GAGACUUGGGCGCUGCCCUU 20 13955
BCLllA-13195 - GGAGACUUGGGCGCUGCCCUU 21 13956
BCLllA-13196 - UGGAGACUUGGGCGCUGCCCUU 22 13957
BCLllA-13197 - CUGGAGACUUGGGCGCUGCCCUU 23 13958
BCLllA-13198 - CCUGGAGACUUGGGCGCUGCCCUU 24 13959
BCLllA-13199 - GGUCCCUGGCUCGGCCUU 18 13960
BCLllA-13200 - CGGUCCCUGGCUCGGCCUU 19 13961
BCLllA-10256 - CCGGUCCCUGGCUCGGCCUU 20 13962
BCLllA-13201 - AAGAGGUGAGACUGGCUU 18 13963
BCLllA-13202 - AAAGAGGUGAGACUGGCUU 19 13964 BCLllA-13203 - AAAAGAGGUGAGACUGGCUU 20 13965
BCLllA-13204 - GAAAAGAGGUGAGACUGGCUU 21 13966
BCLllA-13205 - AGAAAAGAGGUGAGACUGGCUU 22 13967
BCLllA-13206 - GAGAAAAGAGGUGAGACUGGCUU 23 13968
BCLllA-13207 - GGAGAAAAGAGGUGAGACUGGCUU 24 13969
BCLllA-13208 - AUGAACAAUGCUAAGGUU 18 13970
BCLllA-13209 - AAUGAACAAUGCUAAGGUU 19 13971
BCLllA-13210 - UAAUGAACAAUGCUAAGGUU 20 13972
BCLllA-13211 - AUAAUGAACAAUGCUAAGGUU 21 13973
BCLllA-13212 - AAUAAUGAACAAUGCUAAGGUU 22 13974
BCLllA-13213 - AAAUAAUGAACAAUGCUAAGGUU 23 13975
BCLllA-13214 - AAAAUAAUGAACAAUGCUAAGGUU 24 13976
BCLllA-13215 - GCCGCUU UAUUUCUCUUU 18 13977
BCLllA-13216 - CGCCGCUUUAUUUCUCUUU 19 13978
BCLllA-13217 - CCGCCGCUUUAUUUCUCUUU 20 13979
BCLllA-13218 - UCCGCCGCUUUAU UUCUCUUU 21 13980
BCLllA-13219 - UUCCGCCGCUU UAUUUCUCUUU 22 13981
BCLllA-13220 - UUUCCGCCGCU UUAUUUCUCUUU 23 13982
BCLllA-13221 - CUU UCCGCCGCUUUAUU UCUCUUU 24 13983
Table 17A provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS) and have a high level of
orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1 A gene expression, BCLl 1 A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 17A
Figure imgf000480_0001
BCLllA-9482 + U UAAGUGCUGGGGU UUG 17 13989
BCLllA-13225 + CACGCGGACUCUAAAAU 17 13990
BCLllA-13226 + AAUUGUGGGAGAGCCGU 17 13991
BCLllA-13227 - GAUGUGUGUCCAUUGGU 17 13992
BCLllA-13228 + UGCACACACCCCUCUCUCCC 20 13993
BCLllA-9487 + UUACUUACGCGAGAAUUCCC 20 13994
BCLllA-13229 + CACCCCUCUCUCCCCCUCGC 20 13995
BCLllA-13230 + GCU UCUAGUCCUGCGCGCUC 20 13996
BCLllA-9738 - CACUUGAACUUGCAGCUCAG 20 13997
BCLllA-9491 + UGCUUAAGUGCUGGGGUUUG 20 13998
BCLllA-13231 + AUGAAUUGUGGGAGAGCCGU 20 13999
BCLllA-11567 - CCUGAUGUGUGUCCAU UGGU 20 14000
Table 17B provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the second tier parameters. The targeting domains bind within 500 bp (e.g., upstream or downstream) of a transcription start site (TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1 A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1A gene.
Table 17B
Figure imgf000481_0001
Table 17C provides exemplary targeting domains for knocking down the BCLl 1 A gene selected according to the third tier parameters. The targeting domains bind within the additional 500 bp (e.g., upstream or downstream) of a transcription start site (TSS), e.g., extending to lkb upstream and downstream of a TSS. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the BCLl 1 A gene (e.g., reduce or eliminate BCLl 1A gene expression, BCLl 1A protein function, or the level of BCLl 1A protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the BCLl 1 A gene.
Table 17C
Figure imgf000482_0001
Table 18A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region of the BCLl 1 A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), have a high level of orthogonality and starts with 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18A
Figure imgf000483_0001
Table 18B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18B
Figure imgf000483_0002
BCLllA-13270 - UUGGAAUGUAGAGAGGCAGA 20 5' 14045
BCLllA-13271 + AUUAUUUUACUAGUGAAUUA 20 5' 14046
BCLllA-13272 + AAAAU U U AAG ACGGG AAAAC 20 5' 14047
BCLllA-13273 + CU CACAU AAAAAU U U AAG AC 20 5' 14048
BCLllA-13274 + UACACAACUUGUGUUGCACU 20 5' 14049
BCLllA-13275 - UAAGAAAGCAGUGUAAGGCU 20 5' 14050
BCLllA-13276 - AUUAGAAUAAAAGGCUGUUU 20 5' 14051
BCLllA-13277 - U AU U UACAG CCAU AACA 17 3' 14052
BCLllA-13278 + AUACUUACUGUACUGCA 17 3' 14053
BCLllA-13279 + CACUGGAAACCCUGUUA 17 3' 14054
BCLllA-13280 - CUAUUUACAGCCAUAAC 17 3' 14055
BCLllA-13281 + CUACUUAUACAAUUCAC 17 3' 14056
BCLllA-13282 + AAUACUUACUGUACUGC 17 3' 14057
BCLllA-13283 + UACUUACUGUACUGCAG 17 3' 14058
BCLllA-13284 + UGUACUGCAGGGGAAUU 17 3' 14059
BCLllA-13285 - UGGGUAGCAGUGGCUUU 17 3' 14060
BCLllA-13286 - UGGCUUUAGGCUGUUUU 17 3' 14061
BCLllA-13287 - AACUAUUUACAGCCAUAACA 20 3' 14062
BCLllA-13288 + AAAAUACUUACUGUACUGCA 20 3' 14063
BCLllA-13289 + AUUCACUGGAAACCCUGUUA 20 3' 14064
BCLllA-13290 - AAACUAUUUACAGCCAUAAC 20 3' 14065
BCLllA-13291 + AAAUACUUACUGUACUGCAG 20 3' 14066
BCLllA-13292 + UACUGUACUGCAGGGGAAUU 20 3' 14067
BCLllA-13293 - UUAGGCUGUUUUUGGAUCUU 20 3' 14068
BCLllA-13294 - CAGUGGCUUUAGGCUGUUUU 20 3' 14069
Table 18C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and starts with 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18C
Figure imgf000484_0001
BCLllA-13297 - GUAUUUUCUUUCAUUGG 17 3' 14072
BCLllA-13298 - GUAAGUAUUUUCUU UCAUUG 20 3' 14073
Table 18D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18D
Figure imgf000485_0001
Table 18E provides targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene by dual targeting (e.g., dual double strand cleavage). It is contemplated herein that an upstream gRNA can be paired with a downstream gRNA to guide Cas9 nuclease pairs. Exemplary nickase pairs include a targeting domain from Group A and a second targeting domain from Group B, or include a targeting domain from Group C and a second targeting domain from Group D. It is contemplated herein that in an embodiment a targeting domain of Group A can be combined with any of the targeting domains of Group B; in an embodiment a targeting domain of Group C can be combined with any of the targeting domains of Group D. For example, BCLl lA- 13271 or BCLl lA-13264 can be combined with BCLl lA-13276; or BCLl 1A-13262 or BCLl 1A-13282 can be combined with BCLl 1A-13290 or BCLl 1 A- 13280. Table 18E
Figure imgf000486_0001
Table 19A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), have a high level of orthogonality, and start with 5'G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 19A
Figure imgf000486_0002
BCLllA-13325 - GCAGUGGCUUUAGGCUGUUU 20 3' 14100
BCLllA-13326 - GUAGCAGUGGCUUUAGGCUGUUU 23 3' 14101
BCLllA-13327 - GGUAGCAGUGGCUUUAGGCUGUUU 24 3' 14102
Table 19B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCL11A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and have a high level of orthogonality, and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 19B
Figure imgf000487_0001
BCLllA-13350 - AUAAU U AG AAU AAAAGG CUG U U U 23 5' 14125
BCLllA-13351 - AAUAAU U AG AAU AAAAGG CUG U U U 24 5' 14126
BCLllA-13352 + AUACUUACUGUACUGCAG 18 3' 14127
BCLllA-13353 + AAUACUUACUGUACUGCAG 19 3' 14128
BCLllA-13354 + AAAUACUUACUGUACUGCAG 20 3' 14129
BCLllA-13355 - AACUAUUUACAGCCAUAA 18 3' 14130
BCLllA-13356 - AAACUAU U UACAG CCAUAA 19 3' 14131
BCLllA-13357 - CAAACU AU U UACAG CCAUAA 20 3' 14132
BCLllA-13358 - AGCAAACUAUUUACAGCCAUAA 22 3' 14133
BCLllA-13359 - AAGCAAACUAUUUACAGCCAUAA 23 3' 14134
BCLllA-13360 - AGCCAUAACAGGGUUUCCA 19 3' 14135
BCLllA-13361 - CAGCCAUAACAGGGUU UCCA 20 3' 14136
BCLllA-13362 - ACAGCCAUAACAGGGUU UCCA 21 3' 14137
BCLllA-13363 - UACAGCCAUAACAGGGU UUCCA 22 3' 14138
BCLllA-13364 - U U ACAGCCAU AACAGGG U U U CCA 23 3' 14139
BCLllA-13365 - U U U ACAGCCAU AACAGGG U U U CCA 24 3' 14140
BCLllA-13366 - UGAAUUGUAUAAGUAGCA 18 3' 14141
BCLllA-13367 - AGUGAAUUGUAUAAGUAGCA 20 3' 14142
BCLllA-13368 - CAGUGAAUUGUAUAAGUAGCA 21 3' 14143
BCLllA-13369 - CCAGUGAAUUGUAUAAGUAGCA 22 3' 14144
BCLllA-13370 - UCCAGUGAAUUGUAUAAGUAGCA 23 3' 14145
BCLllA-13371 - U UCCAGUGAAUUGUAUAAGUAGCA 24 3' 14146
BCLllA-13372 - CAAAACU AG AAAG U U U U A 18 3' 14147
BCLllA-13373 - AGCAAAACU AG AAAG U U U U A 20 3' 14148
BCLllA-13374 - AGUGGCUUUAGGCUGUUU 18 3' 14149
BCLllA-13375 - CAGUGGCUUUAGGCUGUUU 19 3' 14150
BCLllA-13376 - AGCAGUGGCUUUAGGCUGUUU 21 3' 14151
BCLllA-13377 - UAGCAGUGGCUU UAGGCUGUUU 22 3' 14152
Table 19C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and start with 5'G. The PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 19C
Figure imgf000488_0001
Target SEQ ID
DNA 5' or
gRNA Name Targeting Domain Site NO
Strand 3'
Length
BCLllA-13378 + GAAAAUACUUACUGUACUGCAG 22 3' 14153
BCLllA-13379 - G U U A AG C A A A AC U AG A A AG U U U U A 24 3' 14154
Table 19D provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and the PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase) Table 19D
Figure imgf000489_0001
Table 19E provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the third tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), and the PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 19E
Figure imgf000490_0001
BCLllA-13427 + GCUCAUCUCACAUAAAAAUUUAAG 24 5' 14202
BCLllA-13428 + CAACUUGUGUUGCACUAG 18 5' 14203
BCLllA-13429 + ACAACUUGUGUUGCACUAG 19 5' 14204
BCLllA-13430 + CA CAACUUGUGUUGCACUAG 20 5' 14205
BCLllA-13431 + ACACAACUUGUGUUGCACUAG 21 5' 14206
BCLllA-13432 + UACACAACUUGUGU UGCACUAG 22 5' 14207
BCLllA-13433 + CUACACAACUUGUGUUGCACUAG 23 5' 14208
BCLllA-13434 + UCUACACAACUUGUGUUGCACUAG 24 5' 14209
BCLllA-13435 + AACAGGAAGAUGCAUUCU 18 5' 14210
BCLllA-13436 + AAACAGGAAGAUGCAUUCU 19 5' 14211
BCLllA-13437 + AAAACAGGAAGAUGCAUUCU 20 5' 14212
BCLllA-13438 + GAAAACAGGAAGAUGCAUUCU 21 5' 14213
BCLllA-13439 + GGAAAACAGGAAGAUGCAUUCU 22 5' 14214
BCLllA-13440 + GGGAAAACAGGAAGAUGCAUUCU 23 5' 14215
BCLllA-13441 + CG G G A A A AC AG GAAGAUGCAUUCU 24 5' 14216
BCLllA-13442 + U UAUUUUACUAGUGAAUU 18 5' 14217
BCLllA-13443 + AUUAUUUUACUAGUGAAUU 19 5' 14218
BCLllA-13444 + AAUUAUUUUACUAGUGAAUU 20 5' 14219
BCLllA-13445 + UAAUUAUUUUACUAGUGAAUU 21 5' 14220
BCLllA-13446 + CUAAUUAUUUUACUAGUGAAUU 22 5' 14221
BCLllA-13447 + UCUAAUUAUUUUACUAGUGAAUU 23 5' 14222
BCLllA-13448 + UUCUAAUUAUUUUACUAGUGAAUU 24 5' 14223
BCLllA-13449 + AAAACAGGAAGAUGCAUU 18 5' 14224
BCLllA-13450 + GAAAACAGGAAGAUGCAUU 19 5' 14225
BCLllA-13451 + GG AAAACAGGAAGAUGCAUU 20 5' 14226
BCLllA-13452 + GGGAAAACAGGAAGAUGCAUU 21 5' 14227
BCLllA-13453 + CGGGAAAACAGGAAGAUGCAUU 22 5' 14228
BCLllA-13454 + ACGGGAAAACAGGAAGAUGCAUU 23 5' 14229
BCLllA-13455 + GACGGGAAAACAGGAAGAUGCAUU 24 5' 14230
BCLllA-13456 - U UGGAAUGUAGAGAGGCA 18 5' 14231
BCLllA-13457 - U UUGGAAUGUAGAGAGGCA 19 5' 14232
BCLllA-13458 - U UUUGGAAUGUAGAGAGGCA 20 5' 14233
BCLllA-13459 - GUUUUGGAAUGUAGAGAGGCA 21 5' 14234
BCLllA-13460 - UGUUUUGGAAUGUAGAGAGGCA 22 5' 14235
BCLllA-13461 - CUGUUUUGGAAUGUAGAGAGGCA 23 5' 14236
BCLllA-13462 - GCUGUUUUGGAAUGUAGAGAGGCA 24 5' 14237
BCLllA-13463 - CAACACAAGUUGUGUAGA 18 5' 14238
BCLllA-13464 - GCAACACAAGUUGUGUAGA 19 5' 14239
BCLllA-13465 - UGCAACACAAGUUGUGUAGA 20 5' 14240
BCLllA-13466 - G U G C AACAC AAG UUGUGUAGA 21 5' 14241
BCLllA-13467 - AGUGCAACACAAGUUGUGUAGA 22 5' 14242
BCLllA-13468 - U AG U G C A AC AC A AG UUGUGUAGA 23 5' 14243 BCLllA-13469 - C U AG U G C AACAC AAG UUGUGUAGA 24 5' 14244
BCLllA-13470 - AGGCUGUUUUGGAAUGUA 18 5' 14245
BCLllA-13471 - AAGGCUGUUUUGGAAUGUA 19 5' 14246
BCLllA-13472 - AAAGGCUGUUUUGGAAUGUA 20 5' 14247
BCLllA-13473 - AAAAGGCUGUUUUGGAAUGUA 21 5' 14248
BCLllA-13474 - UAAAAGGCUGUUUUGGAAUGUA 22 5' 14249
BCLllA-13475 - AUAAAAGGCUGUUUUGGAAUGUA 23 5' 14250
BCLllA-13476 - AAUAAAAGGCUGUUUUGGAAUGUA 24 5' 14251
BCLllA-13477 - UGGAAUGUAGAGAGGCAG 18 5' 14252
BCLllA-13478 - UUGGAAUGUAGAGAGGCAG 19 5' 14253
BCLllA-13479 - UUUGGAAUGUAGAGAGGCAG 20 5' 14254
BCLllA-13480 - UUUUGGAAUGUAGAGAGGCAG 21 5' 14255
BCLllA-13481 - GU UUUGGAAUGUAGAGAGGCAG 22 5' 14256
BCLllA-13482 - UGUUUUGGAAUGUAGAGAGGCAG 23 5' 14257
BCLllA-13483 - CUGUUUUGGAAUGUAGAGAGGCAG 24 5' 14258
BCLllA-13484 - CUUAAAUUUUUAUGUGAG 18 5' 14259
BCLllA-13485 - UCUUAAAUUUUUAUGUGAG 19 5' 14260
BCLllA-13486 - GUCUUAAAUUUUUAUGUGAG 20 5' 14261
BCLllA-13487 - CGUCUUAAAUUUUUAUGUGAG 21 5' 14262
BCLllA-13488 - CCGUCUUAAAUUUUUAUGUGAG 22 5' 14263
BCLllA-13489 - CCCGUCUUAAAUUUUUAUGUGAG 23 5' 14264
BCLllA-13490 - UCCCGUCUUAAAUUUUUAUGUGAG 24 5' 14265
BCLllA-13491 - U A AG A A AG C AG U G U A AG G 18 5' 14266
BCLllA-13492 - U U A AG A A AG C AG U G U A AG G 19 5' 14267
BCLllA-13493 - AUUAAGAAAGCAGUGUAAGG 20 5' 14268
BCLllA-13494 - A A U U A AG A A AG C AG U G U A AG G 21 5' 14269
BCLllA-13495 - U A A U U A AG A A AG C AG U G U A AG G 22 5' 14270
BCLllA-13496 - GUAAU U AAG AAAGCAG UG U AAGG 23 5' 14271
BCLllA-13497 - U G U A A U U A AG A A AG CAGUGUAAGG 24 5' 14272
BCLllA-13498 - UUUUGGAAUGUAGAGAGG 18 5' 14273
BCLllA-13499 - GUUUUGGAAUGUAGAGAGG 19 5' 14274
BCLllA-13500 - UGUUUUGGAAUGUAGAGAGG 20 5' 14275
BCLllA-13501 - CUGUUUUGGAAUGUAGAGAGG 21 5' 14276
BCLllA-13502 - GCUGUUUUGGAAUGUAGAGAGG 22 5' 14277
BCLllA-13503 - GGCUGUUUUGGAAUGUAGAGAGG 23 5' 14278
BCLllA-13504 - AGGCUGUUUUGGAAUGUAGAGAGG 24 5' 14279
BCLllA-13505 - AAAGGCUGUUUUGGAAUG 18 5' 14280
BCLllA-13506 - AAAAGGCUGUUUUGGAAUG 19 5' 14281
BCLllA-13507 - UAAAAGGCUGUUUUGGAAUG 20 5' 14282
BCLllA-13508 - AUAAAAGGCUGUUUUGGAAUG 21 5' 14283
BCLllA-13509 - AAUAAAAGGCUGUUUUGGAAUG 22 5' 14284
BCLllA-13510 - GAAUAAAAGGCUGUUUUGGAAUG 23 5' 14285 BCLllA-13511 - AGAAUAAAAGGCUGUUUUGGAAUG 24 5' 14286
BCLllA-13512 - AG U G CAAC ACAAG U U G U G 18 5' 14287
BCLllA-13513 - U AG U G CAAC ACAAG U U G U G 19 5' 14288
BCLllA-13514 - CUAGUGCAACACAAGUUGUG 20 5' 14289
BCLllA-13515 - CCUAGUGCAACACAAGU UGUG 21 5' 14290
BCLllA-13516 - ACCUAGUGCAACACAAGUUGUG 22 5' 14291
BCLllA-13517 - CACCUAGUGCAACACAAGUUGUG 23 5' 14292
BCLllA-13518 - UCACCUAGUGCAACACAAGUUGUG 24 5' 14293
BCLllA-13519 - CCCGUCUUAAAUUUUUAU 18 5' 14294
BCLllA-13520 - UCCCGUCUUAAAUUUU UAU 19 5' 14295
BCLllA-13521 - UUCCCGUCUUAAAUUU UUAU 20 5' 14296
BCLllA-13522 - U UUCCCGUCUUAAAUUUUUAU 21 5' 14297
BCLllA-13523 - U UUUCCCGUCUUAAAUUUUUAU 22 5' 14298
BCLllA-13524 - GU UUUCCCGUCUUAAAUUUUUAU 23 5' 14299
BCLllA-13525 - UGUUUUCCCGUCUUAAAUUUUUAU 24 5' 14300
BCLllA-13526 - GAGCACACUGCUGUAAUU 18 5' 14301
BCLllA-13527 - UGAGCACACUGCUGUAAUU 19 5' 14302
BCLllA-13528 - AUGAGCACACUGCUGUAAUU 20 5' 14303
BCLllA-13529 - GAUGAGCACACUGCUGUAAUU 21 5' 14304
BCLllA-13530 - AGAUGAGCACACUGCUGUAAUU 22 5' 14305
BCLllA-13531 - GAGAUGAGCACACUGCUGUAAUU 23 5' 14306
BCLllA-13532 - UGAGAUGAGCACACUGCUGUAAUU 24 5' 14307
BCLllA-13533 - U UAGAAUAAAAGGCUGUU 18 5' 14308
BCLllA-13534 - AU U AG AAU AAAAGG CUG U U 19 5' 14309
BCLllA-13535 - AAUUAGAAUAAAAGGCUGUU 20 5' 14310
BCLllA-13536 - U AAU U AG AAU AAAAGG CUG U U 21 5' 14311
BCLllA-13537 - AUAAUUAGAAUAAAAGGCUGUU 22 5' 14312
BCLllA-13538 - AAU AAU U AG AAU AAAAGG CUG U U 23 5' 14313
BCLllA-13539 - AAAUAAUUAGAAUAAAAGGCUGUU 24 5' 14314
BCLllA-13540 + UUUCAUUUUUUGCUGACA 18 3' 14315
BCLllA-13541 + GUUUCAUUUU UUGCUGACA 19 3' 14316
BCLllA-13542 + UGUUUCAUUU UUUGCUGACA 20 3' 14317
BCLllA-13543 + UUGUUUCAUU UUUUGCUGACA 21 3' 14318
BCLllA-13544 + UUUGUUUCAU UUUUUGCUGACA 22 3' 14319
BCLllA-13545 + UUUUGUUUCAUUUUUUGCUGACA 23 3' 14320
BCLllA-13546 + UUUUUGUUUCAUUUUUUGCUGACA 24 3' 14321
BCLllA-13547 + AAUAGUUUGCUUCCCCCA 18 3' 14322
BCLllA-13548 + AAAUAGUUUGCUUCCCCCA 19 3' 14323
BCLllA-13549 + UAAAUAGUUUGCUUCCCCCA 20 3' 14324
BCLllA-13550 + GUAAAUAGUUUGCUUCCCCCA 21 3' 14325
BCLllA-13551 + UGUAAAUAGUUUGCUUCCCCCA 22 3' 14326
BCLllA-13552 + CUGUAAAUAGUUUGCUUCCCCCA 23 3' 14327 BCLllA-13553 + GCUGUAAAUAGUUUGCUUCCCCCA 24 3' 14328
BCLllA-13554 + AAUACUUACUGUACUGCA 18 3' 14329
BCLllA-13555 + AAAUACUUACUGUACUGCA 19 3' 14330
BCLllA-13556 + AAAAUACUUACUGUACUGCA 20 3' 14331
BCLllA-13557 + GAAAAUACUUACUGUACUGCA 21 3' 14332
BCLllA-13558 + AGAAAAUACUUACUGUACUGCA 22 3' 14333
BCLllA-13559 + AAGAAAAUACUUACUGUACUGCA 23 3' 14334
BCLllA-13560 + AAAGAAAAUACUUACUGUACUGCA 24 3' 14335
BCLllA-13561 + UGCUACUUAUACAAU UCA 18 3' 14336
BCLllA-13562 + GUGCUACUUAUACAAUUCA 19 3' 14337
BCLllA-13563 + AGUGCUACUUAUACAAUUCA 20 3' 14338
BCLllA-13564 + CAGUGCUACUUAUACAAUUCA 21 3' 14339
BCLllA-13565 + UCAGUGCUACUUAUACAAUUCA 22 3' 14340
BCLllA-13566 + CUCAGUGCUACUUAUACAAUUCA 23 3' 14341
BCLllA-13567 + ACUCAGUGCUACUUAUACAAUUCA 24 3' 14342
BCLllA-13568 + GUUUGCUUCCCCCAAUGA 18 3' 14343
BCLllA-13569 + AGUUUGCUUCCCCCAAUGA 19 3' 14344
BCLllA-13570 + UAGUUUGCUUCCCCCAAUGA 20 3' 14345
BCLllA-13571 + AUAGUUUGCUUCCCCCAAUGA 21 3' 14346
BCLllA-13572 + AAUAGUUUGCUUCCCCCAAUGA 22 3' 14347
BCLllA-13573 + AAAUAGUUUGCUUCCCCCAAUGA 23 3' 14348
BCLllA-13574 + UAAAUAGUUUGCUUCCCCCAAUGA 24 3' 14349
BCLllA-13575 + UUUCUAGUUU UGCUUAAC 18 3' 14350
BCLllA-13576 + CUUUCUAGU UUUGCUUAAC 19 3' 14351
BCLllA-13577 + ACUUUCUAGUUUUGCU UAAC 20 3' 14352
BCLllA-13578 + AACUUUCUAGUUU UGCUUAAC 21 3' 14353
BCLllA-13579 + AAACUUUCUAGUUUUGCUUAAC 22 3' 14354
BCLllA-13580 + AAAACUUUCUAGUUUUGCUUAAC 23 3' 14355
BCLllA-13581 + UAAAACUUUCUAGUUU UGCUUAAC 24 3' 14356
BCLllA-13582 + GCUACUUAUACAAUUCAC 18 3' 14357
BCLllA-13583 + UGCUACUUAUACAAUUCAC 19 3' 14358
BCLllA-13584 + GUGCUACUUAUACAAUUCAC 20 3' 14359
BCLllA-13585 + AGUGCUACUUAUACAAU UCAC 21 3' 14360
BCLllA-13586 + CAGUGCUACUUAUACAAUUCAC 22 3' 14361
BCLllA-13587 + UCAGUGCUACUUAUACAAUUCAC 23 3' 14362
BCLllA-13588 + CUCAGUGCUACUUAUACAAUUCAC 24 3' 14363
BCLllA-13589 + AAAUACUUACUGUACUGC 18 3' 14364
BCLllA-13590 + AAAAUACUUACUGUACUGC 19 3' 14365
BCLllA-13591 + GAAAAUACUUACUGUACUGC 20 3' 14366
BCLllA-13592 + AGAAAAUACUUACUGUACUGC 21 3' 14367
BCLllA-13593 + AAGAAAAUACUUACUGUACUGC 22 3' 14368
BCLllA-13594 + AAAGAAAAUACUUACUGUACUGC 23 3' 14369 BCLllA-13595 + GAAAGAAAAUACUUACUGUACUGC 24 3' 14370
BCLllA-13596 + AAAAUACUUACUGUACUG 18 3' 14371
BCLllA-13597 + GAAAAUACUUACUGUACUG 19 3' 14372
BCLllA-13598 + AGAAAAUACUUACUGUACUG 20 3' 14373
BCLllA-13599 + AAGAAAAUACUUACUGUACUG 21 3' 14374
BCLllA-13600 + AAAGAAAAUACUUACUGUACUG 22 3' 14375
BCLllA-13601 + GAAAGAAAAUACUUACUGUACUG 23 3' 14376
BCLllA-13602 + UGAAAGAAAAUACUUACUGUACUG 24 3' 14377
BCLllA-13603 - GUUCUGUGUCAG C A A A A A 18 3' 14378
BCLllA-13604 - AGUUCUGUGUCAGCAAAAA 19 3' 14379
BCLllA-13605 - GAGUUCUGUGUCAGCAAAAA 20 3' 14380
BCLllA-13606 - UGAGUUCUGUGUCAGCAAAAA 21 3' 14381
BCLllA-13607 - CUGAGUUCUGUGUCAGCAAAAA 22 3' 14382
BCLllA-13608 - ACUGAGUUCUGUGU CAG C AAAAA 23 3' 14383
BCLllA-13609 - CACUGAGUUCUGUGU CAG C AAAAA 24 3' 14384
BCLllA-13610 - AGUAAGUAUUUUCUUUCA 18 3' 14385
BCLllA-13611 - CAGUAAGUAUUUUCUUUCA 19 3' 14386
BCLllA-13612 - ACAGUAAGUAUUUUCUUUCA 20 3' 14387
BCLllA-13613 - UACAGUAAGUAUUUUCUUUCA 21 3' 14388
BCLllA-13614 - GUACAGUAAGUAUUUUCUUUCA 22 3' 14389
BCLllA-13615 - AGUACAGUAAGUAUUUUCUUUCA 23 3' 14390
BCLllA-13616 - CAGUACAGUAAGUAUUUUCUUUCA 24 3' 14391
BCLllA-13617 - UUUCAUGUUAAGCAAAAC 18 3' 14392
BCLllA-13618 - UUUUCAUGUUAAGCAAAAC 19 3' 14393
BCLllA-13619 - AUUUUCAUGUUAAGCAAAAC 20 3' 14394
BCLllA-13620 - UAUUUUCAUGUUAAGCAAAAC 21 3' 14395
BCLllA-13621 - UUAUUUUCAUGUUAAGCAAAAC 22 3' 14396
BCLllA-13622 - AUUAUUUUCAUGU U AAGCAAAAC 23 3' 14397
BCLllA-13623 - UAUUAUUUUCAUGUUAAGCAAAAC 24 3' 14398
BCLllA-13624 - AGUAUUUUCUUUCAUUGG 18 3' 14399
BCLllA-13625 - AAGUAUUUUCUUUCAUUGG 19 3' 14400
BCLllA-13626 - UAAGUAUUUUCUUUCAUUGG 20 3' 14401
BCLllA-13627 - GUAAGUAUUUUCUUUCAUUGG 21 3' 14402
BCLllA-13628 - AGUAAGUAUUUUCUUUCAUUGG 22 3' 14403
BCLllA-13629 - CAGUAAGUAUUUUCUUUCAUUGG 23 3' 14404
BCLllA-13630 - ACAGUAAGUAUUUUCUUUCAUUGG 24 3' 14405
BCLllA-13631 - AAGUAUUUUCUUUCAUUG 18 3' 14406
BCLllA-13632 - UAAGUAUUUUCUUUCAUUG 19 3' 14407
BCLllA-13633 - GUAAGUAUUUUCUUUCAUUG 20 3' 14408
BCLllA-13634 - AGUAAGUAUUUUCUUUCAUUG 21 3' 14409
BCLllA-13635 - CAGUAAGUAUUUUCUUUCAUUG 22 3' 14410
BCLllA-13636 - ACAGUAAGUAUUUUCUUUCAUUG 23 3' 14411 BCLllA-13637 - UACAGUAAGUAUUUUCUUUCAUUG 24 3' 14412
BCLllA-13638 - GUAAGUAUUUUCUU UCAU 18 3' 14413
BCLllA-13639 - AGUAAGUAUUUUCUUUCAU 19 3' 14414
BCLllA-13640 - CAGUAAGUAUUUUCUU UCAU 20 3' 14415
BCLllA-13641 - ACAGUAAGUAUUUUCUUUCAU 21 3' 14416
BCLllA-13642 - UACAGUAAGUAUUUUCUUUCAU 22 3' 14417
BCLllA-13643 - GUACAGUAAGUAUUUUCUUUCAU 23 3' 14418
BCLllA-13644 - AGUACAGUAAGUAUUU UCUUUCAU 24 3' 14419
BCLllA-13645 - UUGGCUAUUGAUACUGAU 18 3' 14420
BCLllA-13646 - UUUGGCUAUUGAUACUGAU 19 3' 14421
BCLllA-13647 - CUU UGGCUAUUGAUACUGAU 20 3' 14422
BCLllA-13648 - UCUUUGGCUAUUGAUACUGAU 21 3' 14423
BCLllA-13649 - AUCUUUGGCUAUUGAUACUGAU 22 3' 14424
BCLllA-13650 - GAUCUUUGGCUAUUGAUACUGAU 23 3' 14425
BCLllA-13651 - GGAUCUUUGGCUAUUGAUACUGAU 24 3' 14426
BCLllA-13652 - UAAGUAUUUUCUUUCAUU 18 3' 14427
BCLllA-13653 - GUAAGUAUUUUCUU UCAUU 19 3' 14428
BCLllA-13654 - AGUAAGUAUUUUCUUUCAUU 20 3' 14429
BCLllA-13655 - CAGUAAGUAUUUUCUU UCAUU 21 3' 14430
BCLllA-13656 - ACAGUAAGUAUUUUCUUUCAUU 22 3' 14431
BCLllA-13657 - UACAGUAAGUAUUUUCUUUCAUU 23 3' 14432
BCLllA-13658 - GUACAGUAAGUAUUUUCUUUCAUU 24 3' 14433
Table 20A provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the first tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS), have a high level of orthogonality, and start with 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 20A
Figure imgf000496_0001
Table 20B provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the second tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 20B
Figure imgf000497_0001
Table 20C provides exemplary targeting domains for removing (e.g., deleting) the enhancer region the BCLl 1A gene selected according to the fourth tier parameters. The targeting domains bind within a region 5' (51.5 to 51.7kb downstream of TSS) or 3' (65.1 to 65.3kb downstream of TSS). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 20C
Figure imgf000497_0002
III. Cas9 Molecules
Cas9 molecules of a variety of species can be used in the methods and compositions described herein. While the S. pyogenes, S. aureus, and S. thermophilus Cas9 molecules are the subject of much of the disclosure herein, Cas9 molecules of, derived from, or based on the Cas9 proteins of other species listed herein can be used as well. In other words, while the much of the description herein uses S. pyogenes and S. thermophilus Cas9 molecules, Cas9 molecules from the other species can replace them, e.g., Staphylococcus aureus and Neisseria meningitidis Cas9 molecules. Additional Cas9 species include: Acidovorax avenae, Actinobacillus
pleuropneumoniae, Actinobacillus succinogenes, Actinobacillus suis, Actinomyces sp., cycliphilus denitrificans, Aminomonas paucivorans, Bacillus cereus, Bacillus smithii, Bacillus thuringiensis, Bacteroides sp., Blastopirellula marina, Bradyrhizobium sp., Brevibacillus laterosporus, Campylobacter coli, Campylobacter jejuni, Campylobacter lari, Candidatus Puniceispirillum, Clostridium cellulolyticum, Clostridium perfringens, Corynebacterium accolens, Corynebacterium diphtheria, Corynebacterium matruchotii, Dinoroseobacter shibae, Eubacterium dolichum, gamma proteobacterium, Gluconacetobacter diazotrophicus,
Haemophilus parainfluenzae, Haemophilus sputorum, Helicobacter canadensis, Helicobacter cinaedi, Helicobacter mustelae, Ilyobacter polytropus, Kingella kingae, Lactobacillus crispatus, Listeria ivanovii, Listeria monocytogenes, Listeriaceae bacterium, Methylocystis sp.,
Methylosinus trichosporium, Mobiluncus mulieris, Neisseria bacilliformis, Neisseria cinerea, Neisseria flavescens, Neisseria lactamica, Neisseria sp., Neisseria wadsworthii, Nitrosomonas sp., Parvibaculum lavamentivorans, Pasteur ella multocida, Phascolarctobacterium
succinatutens, Ralstonia syzygii, Rhodopseudomonas palustris, Rhodovulum sp., Simonsiella muelleri, Sphingomonas sp., Sporolactobacillus vineae, Staphylococcus lugdunensis,
Streptococcus sp., Subdoligranulum sp., Tistrella mobilis, Treponema sp., or Verminephrobacter eiseniae.
A Cas9 molecule, or Cas9 polypeptide, as that term is used herein, refers to a molecule or a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence. Cas9 molecule and Cas9 polypeptide, as those terms are used herein, refer to naturally occurring Cas9 molecules and to engineered, altered, or modified Cas9 molecules or Cas9 polypeptides that differ, e.g., by at least one amino acid residue, from a reference sequence, e.g., the most similar naturally occurring Cas9 molecule or a sequence of Table 21.
Cas9 Domains
Crystal structures have been determined for two different naturally occurring bacterial
Cas9 molecules (Jinek et al., Science, 343(6176): 1247997, 2014) and for S. pyogenes Cas9 with a guide RNA (e.g., a synthetic fusion of crRNA and tracrRNA) (Nishimasu et al., Cell, 156:935- 949, 2014; and Anders et al., Nature, 2014, doi: 10.1038/naturel3579).
A naturally occurring Cas9 molecule comprises two lobes: a recognition (REC) lobe and a nuclease (NUC) lobe; each of which further comprise domains described herein. Figs. 9A-9B provide a schematic of the organization of important Cas9 domains in the primary structure. The domain nomenclature and the numbering of the amino acid residues encompassed by each domain used throughout this disclosure is as described in Nishimasu et al. The numbering of the amino acid residues is with reference to Cas9 from S. pyogenes.
The REC lobe comprises the arginine-rich bridge helix (BH), the RECl domain, and the
REC2 domain. The REC lobe does not share structural similarity with other known proteins, indicating that it is a Cas9-specific functional domain. The BH domain is a long a helix and arginine rich region and comprises amino acids 60-93 of the sequence of S. pyogenes Cas9. The RECl domain is important for recognition of the repeat: anti-repeat duplex, e.g., of a gRNA or a tracrRNA, and is therefore critical for Cas9 activity by recognizing the target sequence. The RECl domain comprises two RECl motifs at amino acids 94 to 179 and 308 to 717 of the sequence of S. pyogenes Cas9. These two RECl domains, though separated by the REC2 domain in the linear primary structure, assemble in the tertiary structure to form the RECl domain. The REC2 domain, or parts thereof, may also play a role in the recognition of the repeat: anti-repeat duplex. The REC2 domain comprises amino acids 180-307 of the sequence of S. pyogenes Cas9.
The NUC lobe comprises the RuvC domain, the HNH domain, and the PAM-interacting (PI) domain. The RuvC domain shares structural similarity to retroviral integrase superfamily members and cleaves a single strand, e.g., the non-complementary strand of the target nucleic acid molecule. The RuvC domain is assembled from the three split RuvC motifs (RuvC I, RuvCII, and RuvCIII, which are often commonly referred to in the art as RuvCI domain, or N- terminal RuvC domain, RuvCII domain, and RuvCIII domain) at amino acids 1-59, 718-769, and 909-1098, respectively, of the sequence of S. pyogenes Cas9. Similar to the REC1 domain, the three RuvC motifs are linearly separated by other domains in the primary structure, however in the tertiary structure, the three RuvC motifs assemble and form the RuvC domain. The HNH domain shares structural similarity with HNH endonucleases, and cleaves a single strand, e.g., the complementary strand of the target nucleic acid molecule. The HNH domain lies between the RuvC II- III motifs and comprises amino acids 775-908 of the sequence of S. pyogenes Cas9. The PI domain interacts with the PAM of the target nucleic acid molecule, and comprises amino acids 1099-1368 of the sequence of S. pyogenes Cas9. A RuvC-like domain and an HNH-like domain
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises an HNH-like domain and a RuvC-like domain. In an embodiment, cleavage activity is dependent on a RuvC-like domain and an HNH-like domain. A Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more of the following domains: a RuvC- like domain and an HNH-like domain. In an embodiment, a Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide and the eaCas9 molecule or eaCas9 polypeptide comprises a RuvC-like domain, e.g., a RuvC-like domain described below, and/or an HNH-like domain, e.g., an HNH-like domain described below. RuvC-like domains
In an embodiment, a RuvC-like domain cleaves, a single strand, e.g., the non- complementary strand of the target nucleic acid molecule. The Cas9 molecule or Cas9 polypeptide can include more than one RuvC-like domain (e.g., one, two, three or more RuvC- like domains). In an embodiment, a RuvC-like domain is at least 5, 6, 7, 8 amino acids in length but not more than 20, 19, 18, 17, 16 or 15 amino acids in length. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises an N-terminal RuvC-like domain of about 10 to 20 amino acids, e.g., about 15 amino acids in length.
N-terminal RuvC-like domains
Some naturally occurring Cas9 molecules comprise more than one RuvC-like domain with cleavage being dependent on the N-terminal RuvC-like domain. Accordingly, Cas9 molecules or Cas9 polypeptide can comprise an N-terminal RuvC-like domain. Exemplary N- terminal RuvC-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula I:
D-X1-G-X2-X3-X4-X5-G-X6-X7-X8-X9 (SEQ ID NO: 8),
wherein,
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X4 is selected from S, Y, N and F (e.g., S);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W);
X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R, or, e.g., selected from T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:8, by as many as 1 but no more than 2, 3, 4, or 5 residues.
In embodiment, the N-terminal RuvC-like domain is cleavage competent.
In embodiment, the N-terminal RuvC-like domain is cleavage incompetent.
In an embodiment, a eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula II:
D-X1-G-X2-X3-S-X5-G-X6-X7-X8-X9, (SEQ ID NO: 9),
wherein
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W);
X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO:9 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-X2-X3-S-V-G-W-A-X8-X9 (SEQ ID NO: 10),
wherein
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 10 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-T-N-S-V-G-W-A-V-X (SEQ ID NO: 11),
wherein
X is a non-polar alkyl amino acid or a hydroxyl amino acid, e.g., X is selected from V, I, L and T (e.g., the eaCas9 molecule can comprise an N-terminal RuvC-like domain shown in Figs. 2A-2G (is depicted as Y)).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 11 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC like domain disclosed herein, e.g., in Figs. 3A-3B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, 3 or all of the highly conserved residues identified in Figs. 3A-3B or Figs. 7A-7B are present.
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC-like domain disclosed herein, e.g., in Figs. 4A-4B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, or all of the highly conserved residues identified in Figs. 4A-4B or Figs. 7A-7B are present.
Additional RuvC-like domains
In addition to the N-terminal RuvC-like domain, the Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more additional RuvC-like domains. In an embodiment, the Cas9 molecule or Cas9 polypeptide can comprise two additional RuvC-like domains. Preferably, the additional RuvC-like domain is at least 5 amino acids in length and, e.g., less than 15 amino acids in length, e.g., 5 to 10 amino acids in length, e.g., 8 amino acids in length.
An additional RuvC-like domain can comprise an amino acid sequence:
I-X1-X2-E-X3-A-R-E (SEQ ID NO: 12), wherein
XI is V or H,
X2 is I, L or V (e.g., I or V); and
X3 is M or T.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence: I-V-X2-E-M-A-R-E (SEQ ID NO: 13), wherein
X2 is I, L or V (e.g., I or V) (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an additional RuvC-like domain shown in Fig. 2A-2G or Figs. 7A-7B (depicted as B)).
An additional RuvC-like domain can comprise an amino acid sequence:
H-H-A-X1-D-A-X2-X3 (SEQ ID NO: 14), wherein
XI is H or L;
X2 is R or V; and
X3 is E or V.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence:
H-H-A-H-D-A-Y-L (SEQ ID NO: 15).
In an embodiment, the additional RuvC-like domain differs from a sequence of SEQ ID NO: 12, 13, 14 or 15 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In some embodiments, the sequence flanking the N-terminal RuvC-like domain is a sequences of formula V:
K-X1'-Y-X2'-X3'-X4'-Z-T-D-X9'-Y, (SEQ ID NO: 16). wherein
Χ is selected from K and P,
X2' is selected from V, L, I, and F (e.g., V, I and L);
X3' is selected from G, A and S (e.g., G),
X4' is selected from L, I, V and F (e.g., L);
X9' is selected from D, E, N and Q; and
Z is an N-terminal RuvC-like domain, e.g., as described above.
HNH-like domains
In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. In an embodiment, an HNH-like domain is at least 15, 20, 25 amino acids in length but not more than 40, 35 or 30 amino acids in length, e.g., 20 to 35 amino acids in length, e.g., 25 to 30 amino acids in length. Exemplary HNH-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VI:
X 1 -X2-X3-H-X4-X5-P-X6-X7-X8-X9-X 10-X 11 -X 12-X 13-X 14-X 15-N-X 16-X 17-X 18- X19-X20-X21-X22-X23-N (SEQ ID NO: 17), wherein
XI is selected from D, E, Q and N (e.g., D and E);
X2 is selected from L, I, R, Q, V, M and K;
X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V);
X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X7 is selected from S, A, D, T and K (e.g., S and A);
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
XI I is selected from D, S, N, R, L and T (e.g., D);
X12 is selected from D, N and S;
X13 is selected from S, A, T, G and R (e.g., S); X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X16 is selected from K, L, R, M, T and F (e.g., L, R and K);
X17 is selected from V, L, I, A and T;
X18 is selected from L, I, V and A (e.g., L and I);
X19 is selected from T, V, C, E, S and A (e.g., T and V);
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, a HNH-like domain differs from a sequence of SEQ ID NO: 17 by at least one but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the HNH-like domain is cleavage competent.
In an embodiment, the HNH-like domain is cleavage incompetent.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
X 1 -X2-X3-H-X4-X5-P-X6-S-X8-X9-X 10-D-D-S-X 14-X 15-N-K- V-L-X 19-X20-X21 - X22-X23-N (SEQ ID NO: 18),
wherein
XI is selected from D and E;
X2 is selected from L, I, R, Q, V, M and K;
X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V);
X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X19 is selected from T, V, C, E, S and A (e.g., T and V); X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 18 by
1, 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain comprising an amino acid sequence of formula VII:
X 1 - V-X3-H-I- V-P-X6-S-X8-X9-X 10-D-D-S-X 14-X 15-N-K- V-L-T-X20-X21 -X22-X23- N (SEQ ID NO: 19),
wherein
XI is selected from D and E;
X3 is selected from D and E;
X6 is selected from Q, H, R, K, Y, I, L and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 19 by 1, 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH-like domain having an amino acid sequence of formula VIII:
D-X2-D-H-I-X5-P-Q-X7-F-X9-X 10-D-X 12-S-I-D-N-X 16- V-L-X 19-X20-S-X22-X23-N (SEQ ID NO:20),
wherein
X2 is selected from I and V; X5 is selected from I and V;
X7 is selected from A and S;
X9 is selected from I and L;
X10 is selected from K and T;
X12 is selected from D and N;
X16 is selected from R, K and L; X19 is selected from T and V;
X20 is selected from S and R;
X22 is selected from K, D and A; and
X23 is selected from E, K, G and N (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an HNH-like domain as described herein).
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 20 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises the amino acid sequence of formula IX:
L- Y- Y-L-Q-N-G-X 1 ' -D-M- Y-X2' -X3 ' -X4' -X5 ' -L-D-I— X6' -X7 ' -L-S-X8 ' - Y-Z-N-R-
X9'-K-X10'-D-X11'-V-P (SEQ ID NO: 21),
wherein
Χ is selected from K and R;
X2' is selected from V and T;
X3' is selected from G and D;
X4' is selected from E, Q and D;
X5' is selected from E and D;
X6' is selected from D, N and H;
XV is selected from Y, R and N;
X8' is selected from Q, D and N; X9' is selected from G and E;
X10' is selected from S and G;
XI 1 ' is selected from D and N; and
Z is an HNH-like domain, e.g., as described above.
In an embodiment, the eaCas9 molecule or eaCas9 polypeptide comprises an amino acid sequence that differs from a sequence of SEQ ID NO:21 by as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, the HNH-like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 5A-5C or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1 or both of the highly conserved residues identified in Figs. 5A- 5C or Figs. 7A-7B are present.
In an embodiment, the HNH -like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 6A-6B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, all 3 of the highly conserved residues identified in Figs. 6A-6B or Figs. 7A-7B are present. Cas9 Activities
Nuclease and Helicase Activities
In an embodiment, the Cas9 molecule or Cas9 polypeptide is capable of cleaving a target nucleic acid molecule. Typically wild type Cas9 molecules cleave both strands of a target nucleic acid molecule. Cas9 molecules and Cas9 polypeptides can be engineered to alter nuclease cleavage (or other properties), e.g., to provide a Cas9 molecule or Cas9 peolypeptide which is a nickase, or which lacks the ability to cleave target nucleic acid. A Cas9 molecule or Cas9 polypeptide that is capable of cleaving a target nucleic acid molecule is referred to herein as an eaCas9 (an enzymatically active Cas9) molecule or eaCas9 polypeptide.
In an embodiment, an eaCas9 molecule or Cas9 polypeptide comprises one or more of the following enzymatic activities:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule;
a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity; and
a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid.
In an embodiment, an enzymatically active or an eaCas9 molecule or eaCas9 polypeptide cleaves both DNA strands and results in a double stranded break. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide cleaves only one strand, e.g., the strand to which the gRNA hybridizes to, or the strand complementary to the strand the gRNA hybridizes with. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH domain and an inactive, or cleavage incompetent, RuvC domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, RuvC domain.
Some Cas9 molecules or Cas9 polypeptides have the ability to interact with a gRNA molecule, and in conjunction with the gRNA molecule localize to a core target domain, but are incapable of cleaving the target nucleic acid, or incapable of cleaving at efficient rates. Cas9 molecules having no, or no substantial, cleavage activity are referred to herein as an eiCas9 molecule or eiCas9 polypeptide. For example, an eiCas9 molecule or eiCas9 polypeptide can lack cleavage activity or have substantially less, e.g., less than 20, 10, 5, 1 or 0.1 % of the cleavage activity of a reference Cas9 molecule or eiCas9 polypeptide, as measured by an assay described herein.
Targeting And PAMs
A Cas9 molecule or Cas9 polypeptide, is a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain, and in an embodiment, a PAM sequence.
In an embodiment, the ability of an eaCas9 molecule or eaCas9 polypeptide to interact with and cleave a target nucleic acid is PAM sequence dependent. A PAM sequence is a sequence in the target nucleic acid. In an embodiment, cleavage of the target nucleic acid occurs upstream from the PAM sequence. EaCas9 molecules from different bacterial species can recognize different sequence motifs (e.g., PAM sequences). In an embodiment, an eaCas9 molecule of S. pyogenes recognizes the sequence motif NGG and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Mali et ah, SCIENCE 2013; 339(6121): 823-826. In an embodiment, an eaCas9 molecule of S. thermophilus recognizes the sequence motif NGGNG (SEQ ID NO.: 90) and/or NNAGAAW (W = A or T) (SEQ ID NO.: 91) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from these sequences. See, e.g., Horvath et al, SCIENCE 2010; 327(5962): 167-170, and Deveau et al, J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. mutans recognizes the sequence motif NGG and/or NAAR (R = A or G) (SEQ ID NO.: 92) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5 base pairs, upstream from this sequence. See, e.g., Deveau et al, J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRR (R = A or G) (SEQ ID NO.: 93) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRN (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRT (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRV (R = A or G) (SEQ ID NO.: ) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of N. meningitidis recognizes the sequence motif NNNNGATT or NNNGCTT (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Hou et al, PNAS 2013; 110(39): 15644-15649. The ability of a Cas9 molecule to recognize a PAM sequence can be determined, e.g., using a transformation assay described in Jinek et al, SCIENCE 2012, 337:816. In the aforementioned embodiments, N can be any nucleotide residue, e.g., any of A, G, C or T. As is discussed herein, Cas9 molecules can be engineered to alter the PAM specificity of the Cas9 molecule.
Exemplary naturally occurring Cas9 molecules are described in Chylinski et al, RNA BIOLOGY 2013 10:5, 727-737. Such Cas9 molecules include Cas9 molecules of a cluster 1 bacterial family, cluster 2 bacterial family, cluster 3 bacterial family, cluster 4 bacterial family, cluster 5 bacterial family, cluster 6 bacterial family, a cluster 7 bacterial family, a cluster 8 bacterial family, a cluster 9 bacterial family, a cluster 10 bacterial family, a cluster 11 bacterial family, a cluster 12 bacterial family, a cluster 13 bacterial family, a cluster 14 bacterial family, a cluster 15 bacterial family, a cluster 16 bacterial family, a cluster 17 bacterial family, a cluster 18 bacterial family, a cluster 19 bacterial family, a cluster 20 bacterial family, a cluster 21 bacterial family, a cluster 22 bacterial family, a cluster 23 bacterial family, a cluster 24 bacterial family, a cluster 25 bacterial family, a cluster 26 bacterial family, a cluster 27 bacterial family, a cluster 28 bacterial family, a cluster 29 bacterial family, a cluster 30 bacterial family, a cluster 31 bacterial family, a cluster 32 bacterial family, a cluster 33 bacterial family, a cluster 34 bacterial family, a cluster 35 bacterial family, a cluster 36 bacterial family, a cluster 37 bacterial family, a cluster 38 bacterial family, a cluster 39 bacterial family, a cluster 40 bacterial family, a cluster 41 bacterial family, a cluster 42 bacterial family, a cluster 43 bacterial family, a cluster 44 bacterial family, a cluster 45 bacterial family, a cluster 46 bacterial family, a cluster 47 bacterial family, a cluster 48 bacterial family, a cluster 49 bacterial family, a cluster 50 bacterial family, a cluster 51 bacterial family, a cluster 52 bacterial family, a cluster 53 bacterial family, a cluster 54 bacterial family, a cluster 55 bacterial family, a cluster 56 bacterial family, a cluster 57 bacterial family, a cluster 58 bacterial family, a cluster 59 bacterial family, a cluster 60 bacterial family, a cluster 61 bacterial family, a cluster 62 bacterial family, a cluster 63 bacterial family, a cluster 64 bacterial family, a cluster 65 bacterial family, a cluster 66 bacterial family, a cluster 67 bacterial family, a cluster 68 bacterial family, a cluster 69 bacterial family, a cluster 70 bacterial family, a cluster 71 bacterial family, a cluster 72 bacterial family, a cluster 73 bacterial family, a cluster 74 bacterial family, a cluster 75 bacterial family, a cluster 76 bacterial family, a cluster 77 bacterial family, or a cluster 78 bacterial family.
Exemplary naturally occurring Cas9 molecules include a Cas9 molecule of a cluster 1 bacterial family. Examples include a Cas9 molecule of: S. pyogenes (e.g., strain SF370, MGAS10270, MGAS10750, MGAS2096, MGAS315, MGAS5005, MGAS6180, MGAS9429, NZ131 and SSI-1), S. thermophilus (e.g., strain LMD-9), S. pseudoporcinus (e.g., strain SPIN 20026), S. mutans (e.g., strain UA159, NN2025), S. macacae (e.g., strain NCTC11558), S.
gallolyticus (e.g., strain UCN34, ATCC BAA-2069), S. equities (e.g., strain ATCC 9812, MGCS 124), S. dysdalactiae (e.g., strain GGS 124), S. bovis (e.g., strain ATCC 700338), S. anginosus (e.g., strain F0211), S. agalactiae (e.g., strain NEM316, A909), Listeria monocytogenes (e.g., strain F6854), Listeria innocua (L. innocua, e.g., strain Clipl l262), Enterococcus italicus (e.g., strain DSM 15952), or Enterococcus faecium (e.g., strain 1,231,408). Additional exemplary Cas9 molecules are a Cas9 molecule of Neisseria meningitidis (Hou et al., PNAS Early Edition 2013, 1-6 and a S. aureus cas9 molecule.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence:
having 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with;
differs at no more than, 2, 5, 10, 15, 20, 30, or 40% of the amino acid residues when compared with;
differs by at least 1, 2, 5, 10 or 20 amino acids, but by no more than 100, 80, 70, 60, 50, 40 or 30 amino acids from; or
is identical to any Cas9 molecule sequence described herein, or a naturally occurring Cas9 molecule sequence, e.g., a Cas9 molecule from a species listed herein or described in Chylinski et al, RNA BIOLOGY 2013 10:5, 727-737; Hou et al, PNAS Early Edition 2013, 1-6; SEQ ID NO: 1-4. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises one or more of the following activities: a nickase activity; a double stranded cleavage activity (e.g., an endonuclease and/or exonuclease activity); a helicase activity; or the ability, together with a gRNA molecule, to localize to a target nucleic acid.
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises any of the amino acid sequence of the consensus sequence of Figs. 2A-2G, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, S. thermophilus, S. mutans and L. innocua, and "-" indicates any amino acid. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of the consensus sequence disclosed in Figs. 2A-2G by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues. In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises the amino acid sequence of SEQ ID NO:7 of Figs. 7A-7B, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule of S. pyogenes, or N. meningitidis, "-" indicates any amino acid, and "-" indicates any amino acid or absent. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of SEQ ID NO:6 or 7 disclosed in Figs. 7A-7B by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues. A comparison of the sequence of a number of Cas9 molecules indicate that certain regions are conserved. These are identified below as:
region 1 ( residuesl to 180, or in the case of region l'residues 120 to 180)
region 2 ( residues360 to 480);
region 3 ( residues 660 to 720);
region 4 ( residues 817 to 900); and
region 5 ( residues 900 to 960);
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises regions 1-5, together with sufficient additional Cas9 molecule sequence to provide a biologically active molecule, e.g., a Cas9 molecule having at least one activity described herein. In an embodiment, each of regions 1-5, independently, have 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with the corresponding residues of a Cas9 molecule or Cas9 polypeptide described herein, e.g., a sequence from Figs. 2A-2G or from Figs. 7A-7B.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1:
having 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 1-180 (the numbering is according to the motif sequence in Fig. 2; 52% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes;
differs by at least 1, 2, 5, 10 or 20 amino acids but by no more than 90, 80, 70, 60, 50, 40 or 30 amino acids from amino acids 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or Listeria innocua; or
is identical to 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1 ' :
having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 120-180 (55% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua ; or
is identical to 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 2:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 360-480 (52% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 3:
having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 660-720 (56% of residues in the four Cas9 sequences in Fig. 2 are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 4:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 817-900 (55% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 5:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 900-960 (60% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua; or
is identical to 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or L. innocua.
Engineered Or Altered Cas9 Molecules And Cas9 Polypeptides
Cas9 molecules and Cas9 polypeptides described herein, e.g., naturally occurring Cas9 molecules, can possess any of a number of properties, including: nuclease activity (e.g., endonuclease and/or exonuclease activity); helicase activity; the ability to associate functionally with a gRNA molecule; and the ability to target (or localize to) a site on a nucleic acid (e.g., PAM recognition and specificity). In an embodiment, a Cas9 molecule or Cas9 polypeptide can include all or a subset of these properties. In a typical embodiment, a Cas9 molecule or Cas9 polypeptide has the ability to interact with a gRNA molecule and, in concert with the gRNA molecule, localize to a site in a nucleic acid. Other activities, e.g., PAM specificity, cleavage activity, or helicase activity can vary more widely in Cas9 molecules and Cas9 polypeptides.
Cas9 molecules include engineered Cas9 molecules and engineered Cas9 polypeptides (engineered, as used in this context, means merely that the Cas9 molecule or Cas9 polypeptide differs from a reference sequences, and implies no process or origin limitation). An engineered Cas9 molecule or Cas9 polypeptide can comprise altered enzymatic properties, e.g., altered nuclease activity, (as compared with a naturally occurring or other reference Cas9 molecule) or altered helicase activity. As discussed herein, an engineered Cas9 molecule or Cas9 polypeptide can have nickase activity (as opposed to double strand nuclease activity). In an embodiment an engineered Cas9 molecule or Cas9 polypeptide can have an alteration that alters its size, e.g., a deletion of amino acid sequence that reduces its size, e.g., without significant effect on one or more, or any Cas9 activity. In an embodiment, an engineered Cas9 molecule or Cas9 polypeptide can comprise an alteration that affects PAM recognition. E.g., an engineered Cas9 molecule can be altered to recognize a PAM sequence other than that recognized by the endogenous wild-type PI domain. In an embodiment a Cas9 molecule or Cas9 polypeptide can differ in sequence from a naturally occurring Cas9 molecule but not have significant alteration in one or more Cas9 activities.
Cas9 molecules or Cas9 polypeptides with desired properties can be made in a number of ways, e.g., by alteration of a parental, e.g., naturally occurring, Cas9 molecules or Cas9 polypeptides, to provide an altered Cas9 molecule or Cas9 polypeptide having a desired property. For example, one or more mutations or differences relative to a parental Cas9 molecule, e.g., a naturally occurring or engineered Cas9 molecule, can be introduced. Such mutations and differences comprise: substitutions (e.g., conservative substitutions or
substitutions of non-essential amino acids); insertions; or deletions. In an embodiment, a Cas9 molecule or Cas9 polypeptide can comprises one or more mutations or differences, e.g., at least 1, 2, 3, 4, 5, 10, 15, 20, 30, 40 or 50 mutations but less than 200, 100, or 80 mutations relative to a reference, e.g., a parental, Cas9 molecule.
In an embodiment, a mutation or mutations do not have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. In an embodiment, a mutation or mutations have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein.
Non-Cleaving and Modified-Cleavage Cas9 Molecules and Cas9 Polypeptides
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule or Cas9 polypeptide can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S. pyogenes, as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded nucleic acid (endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complementary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity) , e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated. Modified Cleavage eaCas9 Molecules and eaCas9 Polypeptides
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following activities: cleavage activity associated with an N-terminal RuvC-like domain; cleavage activity associated with an HNH-like domain; cleavage activity associated with an HNH-like domain and cleavage activity associated with an N-terminal RuvC-like domain.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH-like domain (e.g., an HNH-like domain described herein, e.g., SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 or SEQ ID NO: 21) and an inactive, or cleavage incompetent, N-terminal RuvC-like domain. An exemplary inactive, or cleavage incompetent N-terminal RuvC-like domain can have a mutation of an aspartic acid in an N-terminal RuvC-like domain, e.g., an aspartic acid at position 9 of the consensus sequence disclosed in Figs. 2A-2G or an aspartic acid at position 10 of SEQ ID NO: 7, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 molecule or eaCas9 polypeptide differs from wild type in the N-terminal RuvC-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or .1 % of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, N-terminal RuvC-like domain (e.g., a RuvC-like domain described herein, e.g., SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, or SEQ ID NO: 16). Exemplary inactive, or cleavage incompetent HNH-like domains can have a mutation at one or more of: a histidine in an HNH-like domain, e.g., a histidine shown at position 856 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine; and one or more asparagines in an HNH-like domain, e.g., an asparagine shown at position 870 of the consensus sequence disclosed in Figs. 2A-2G and/or at position 879 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 differs from wild type in the HNH-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus . In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
Alterations in the Ability to Cleave One or Both Strands of a Target Nucleic Acid
In an embodiment, exemplary Cas9 activities comprise one or more of PAM specificity, cleavage activity, and helicase activity. A mutation(s) can be present, e.g., in: one or more RuvC domains, e.g., an N-terminal RuvC domain; an HNH domain; a region outside the RuvC domains and the HNH domain. In an embodiment, a mutation(s) is present in a RuvC domain. In an embodiment, a mutation(s) is present in an HNH domain. In an embodiment, mutations are present in both a RuvC domain and an HNH domain.
Exemplary mutations that may be made in the RuvC domain or HNH domain with reference to the S. pyogenes sequence include: D10A, E762A, H840A, N854A, N863A and/or
D986A.
In an embodiment, a Cas9 molecule is an eiCas9 molecule comprising one or more differences in a RuvC domain and/or in an HNH domain as compared to a reference Cas9 molecule, and the eiCas9 molecule does not cleave a nucleic acid, or cleaves with significantly less efficiency than does wildype, e.g., when compared with wild type in a cleavage assay, e.g., as described herein, cuts with less than 50, 25, 10, or 1% of a reference Cas9 molecule, as measured by an assay described herein.
Whether or not a particular sequence, e.g., a substitution, may affect one or more activity, such as targeting activity, cleavage activity, etc, can be evaluated or predicted, e.g., by evaluating whether the mutation is conservative. In an embodiment, a "non-essential" amino acid residue, as used in the context of a Cas9 molecule, is a residue that can be altered from the wild-type sequence of a Cas9 molecule, e.g., a naturally occurring Cas9 molecule, e.g., an eaCas9 molecule, without abolishing or more preferably, without substantially altering a Cas9 activity (e.g., cleavage activity), whereas changing an "essential" amino acid residue results in a substantial loss of activity (e.g., cleavage activity).
In an embodiment, a Cas9 molecule comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded break
(endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non- complimentary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
In an embodiment, the altered Cas9 molecule is an eaCas9 molecule comprising one or more of the following activities: cleavage activity associated with a RuvC domain; cleavage activity associated with an HNH domain; cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain.
In an embodiment, the altered Cas9 molecule is an eiCas9 molecule which does not cleave a nucleic acid molecule (either double stranded or single stranded nucleic acid molecules) or cleaves a nucleic acid molecule with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can be a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. thermophilus, S. aureus, C. jejuni or N. meningitidis. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology. In an embodiment, the eiCas9 molecule lacks substantial cleavage activity associated with a RuvC domain and cleavage activity associated with an HNH domain.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. pyogenes shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. pyogenes (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G or SEQ ID NO: 7.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. thermophilus shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. thermophilus (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G. In an embodiment In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. mutans shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. mutans (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of L. innocula shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of L. innocula (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-"in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can be a fusion, e.g., of two of more different Cas9 molecules, e.g., of two or more naturally occurring Cas9 molecules of different species. For example, a fragment of a naturally occurring Cas9 molecule of one species can be fused to a fragment of a Cas9 molecule of a second species. As an example, a fragment of a Cas9 molecule of S.
pyogenes comprising an N-terminal RuvC-like domain can be fused to a fragment of Cas9 molecule of a species other than S. pyogenes (e.g., S. thermophilus) comprising an HNH-like domain. Cas9 Molecules and Cas9 Polypeptides with Altered PAM Recognition or No PAM Recognition
Naturally occurring Cas9 molecules can recognize specific PAM sequences, for example the PAM recognition sequences described above for, e.g., S. pyogenes, S. thermophilus, S.
mutans, S. aureus and N. meningitidis.
In an embodiment, a Cas9 molecule or Cas9 polypeptide has the same PAM specificities as a naturally occurring Cas9 molecule. In an embodiment, a Cas9 molecule or Cas9
polypeptide has a PAM specificity not associated with a naturally occurring Cas9 molecule, or a PAM specificity not associated with the naturally occurring Cas9 molecule to which it has the closest sequence homology. For example, a naturally occurring Cas9 molecule can be altered, e.g., to alter PAM recognition, e.g., to alter the PAM sequence that the Cas9 molecule or Cas9 polypeptide recognizes to decrease off target sites and/or improve specificity; or eliminate a PAM recognition requirement. In an embodiment, a Cas9 molecule or Cas9 polypeptide can be altered, e.g., to increase length of PAM recognition sequence and/or improve Cas9 specificity to high level of identity (e.g., 98%, 99% or 100% match between gRNA and a PAM sequence), e.g., to decrease off target sites and increase specificity. In an embodiment, the length of the PAM recognition sequence is at least 4, 5, 6, 7, 8, 9, 10 or 15 amino acids in length. In an embodiment, the Cas9 specificity requires at least 90%, 95%, 96%, 97%, 98%, 99% or more homology between the gRNA and the PAM sequence. Cas9 molecules or Cas9 polypeptides that recognize different PAM sequences and/or have reduced off-target activity can be generated using directed evolution. Exemplary methods and systems that can be used for directed evolution of Cas9 molecules are described, e.g., in Esvelt et al. Nature 2011, 472(7344): 499- 503. Candidate Cas9 molecules can be evaluated, e.g., by methods described in Section IV.
Alterations of the PI domain, which mediates PAM recognition, are discussed below.
Synthetic Cas9 Molecules and Cas9 Polypeptides with Altered PI Domains
Current genome-editing methods are limited in the diversity of target sequences that can be targeted by the PAM sequence that is recognized by the Cas9 molecule utilized. A synthetic Cas9 molecule (or Syn-Cas9 molecule), or synthetic Cas9 polypeptide (or syn-Cas9
polypeptide), as that term is used herein, refers to a Cas9 molecule or Cas9 poypeptide that comprises a Cas9 core domain from one bacterial species and a functional altered PI domain, i.e., a PI domain other than that naturally associated with the Cas9 core domain, e.g., from a different bacterial species.
In an embodiment, the altered PI domain recognizes a PAM sequence that is different from the PAM sequence recognized by the naturally- occurring Cas9 from which the Cas9 core domain is derived. In an embodiment, the altered PI domain recognizes the same PAM sequence recognized by the naturally- occurring Cas9 from which the Cas9 core domain is derived, but with different affinity or specificity. A Syn-Cas9 molecule or Syn-Cas9 polypetide can be, respectively, a Syn-eaCas9 molecule or Syn-eaCas9 polypeptide or a Syn-eiCas9 molecule Syn- eiCas9 polypeptide.
An exemplary Syn-Cas9 molecule Syn-Cas9 polypetide comprises:
a) a Cas9 core domain, e.g., a Cas9 core domain from Table 21 or 22, e.g., a S. aureus, S. pyogenes, or C. jejuni Cas9 core domain; and
b) an altered PI domain from a species X Cas9 sequence selected from Tables 24 and 25. In an embodiment, the RKR motif (the PAM binding motif) of said altered PI domain comprises: differences at 1, 2, or 3 amino acid residues; a difference in amino acid sequence at the first, second, or third position; differences in amino acid sequence at the first and second positions, the first and third positions, or the second and third positions; as compared with the sequence of the RKR motif of the native or endogenous PI domain associated with the Cas9 core domain.
In an embodiment, the Cas9 core domain comprises the Cas9 core domain from a species
X Cas9 from Table 21 and said altered PI domain comprises a PI domain from a species Y Cas9 from Table 21.
In an embodiment, the RKR motif of the species X Cas9 is other than the RKR motif of the species Y Cas9.
In an embodiment, the RKR motif of the altered PI domain is selected from XXY, XNG, and XNQ.
In an embodiment, the altered PI domain has at least 60, 70, 80, 90, 95, or 100% homology with the amino acid sequence of a naturally occurring PI domain of said species Y from Table 21. In an embodiment, the altered PI domain differs by no more than 50, 40, 30, 25, 20, 15, 10, 5, 4, 3, 2, or 1 amino acid residue from the amino acid sequence of a naturally occurring PI domain of said second species from Table 21.
In an embodiment, the Cas9 core domain comprises a S. aureus core domain and altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from
Table 25.
In an embodiment, the Cas9 core domain comprises a S. pyogenes core domain and the altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 25.
In an embodiment, the Cas9 core domain comprises a C. jejuni core domain and the altered PI domain comprises: an A. denitrificans PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 25.
In an embodiment, the Cas9 molecule further comprises a linker disposed between said
Cas9 core domain and said altered PI domain.
In an embodiment, the linker comprises: a linker described elsewhere herein disposed between the Cas9 core domain and the heterologous PI domain. Suitable linkers are further described in Section V.
Exemplary altered PI domains for use in Syn-Cas9 molecules are described in Tables 24 and 25. The sequences for the 83 Cas9 orthologs referenced in Tables 24 and 25 are provided in Table 21. Table 23 provides the Cas9 orthologs with known PAM sequences and the corresponding RKR motif.
In an embodiment, a Syn-Cas9 molecule may also be size- optimized, e.g., the Syn-Cas9 molecule comprises one or more deletions, and optionally one or more linkers disposed between the amino acid residues flanking the deletions. In an embodiment, a Syn-Cas9 molecule comprises a REC deletion.
Size-Optimized Cas9 Molecules
Engineered Cas9 molecules and engineered Cas9 polypeptides described herein include Cas9 molecule or Cas9 polypeptide comprising a deletion that reduces the size of the molecule while still retaining desired Cas9 properties, e.g., essentially native conformation, Cas9 nuclease activity, and/or target nucleic acid molecule recognition. Provided herein are Cas9 molecules or Cas9 polypeptides comprising one or more deletions and optionally one or more linkers, wherein a linker is disposed between the amino acid residues that flank the deletion. Methods for identifying suitable deletions in a reference Cas9 molecule, methods for generating Cas9 molecules with a deletion and a linker, and methods for using such Cas9 molecules will be apparent to one of ordinary skill in the art upon review of this document.
A Cas9 molecule, e.g., a S. aureus, S. pyogenes, or C. jejuni, Cas9 molecule, having a deletion is smaller, e.g., has reduced number of amino acids, than the corresponding naturally- occurring Cas9 molecule. The smaller size of the Cas9 molecules allows increased flexibility for delivery methods, and thereby increases utility for genome-editing. A Cas9 molecule can comprise one or more deletions that do not substantially affect or decrease the activity of the resultant Cas9 molecules described herein. Activities that are retained in the Cas9 molecules comprising a deletion as described herein include one or more of the following:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non-complementary strand or the complementary strand, of a nucleic acid molecule; a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity;
a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid;
and recognition activity of a nucleic acid molecule, e.g., a target nucleic acid or a gRNA. Activity of the Cas9 molecules described herein can be assessed using the activity assays described herein or in the art.
Identifying regions suitable for deletion
Suitable regions of Cas9 molecules for deletion can be identified by a variety of methods. Naturally- occurring orthologous Cas9 molecules from various bacterial species, e.g., any one of those listed in Table 21, can be modeled onto the crystal structure of S. pyogenes Cas9
(Nishimasu et al., Cell, 156:935-949, 2014) to examine the level of conservation across the selected Cas9 orthologs with respect to the three-dimensional conformation of the protein. Less conserved or unconserved regions that are spatially located distant from regions involved in Cas9 activity, e.g., interface with the target nucleic acid molecule and/or gRNA, represent regions or domains are candidates for deletion without substantially affecting or decreasing Cas9 activity.
REC-Optimized Cas9 Molecules
A REC-optimized Cas9 molecule, as that term is used herein, refers to a Cas9 molecule that comprises a deletion in one or both of the REC2 domain and the RE1CT domain (collectively a REC deletion), wherein the deletion comprises at least 10% of the amino acid residues in the cognate domain. A REC-optimized Cas9 molecule can be an eaCas9 molecule or an eiCas9 molecule. An exemplary REC-optimizedCas9 molecule comprises:
a) a deletion selected from:
i) a REC2 deletion;
ii) a REC ICT deletion; or
iii) a REC 1 SUB deletion.
Optionally, a linker is disposed between the amino acid residues that flank the deletion. In an embodiment a Cas9 molecule includes only one deletion, or only two deletions. A Cas9 molecule can comprise a REC2 deletion and a REC ICT deletion. A Cas9 molecule can comprise a REC2 deletion and a REC 1 SUB deletion.
Generally, the deletion will contain at least 10% of the amino acids in the cognate domain, e.g., a REC2 deletion will include at least 10% of the amino acids in the REC2 domain.
A deletion can comprise: at least 10, 20, 30, 40, 50, 60, 70, 80, or 90% of the amino acid residues of its cognate domain; all of the amino acid residues of its cognate domain; an amino acid residue outside its cognate domain; a plurality of amino acid residues outside its cognate domain; the amino acid residue immediately N terminal to its cognate domain; the amino acid residue immediately C terminal to its cognate domain; the amino acid residue immediately N terminal to its cognate and the amino acid residue immediately C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to to its cognate domain and a plurality of e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain.
In an embodiment, a deletion does not extend beyond: its cognate domain; the N terminal amino acid residue of its cognate domain; the C terminal amino acid residue of its cognate domain.
A REC-optimized Cas9 molecule can include a linker disposed between the amino acid residues that flank the deletion. Suitable linkers for use between the amino acid resides that flank a REC deletion in a REC-optimized Cas9 molecule is disclosed in Section V.
In an embodiment a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, has at least 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99, or 100% homology with the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 21, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associated linker, differs by no more than 1, 2, 3, 4, 5, 6, 7,
8, 9, 10, 15, 20, or 25, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 21, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a REC-optimized Cas9 molecule comprises an amino acid sequence that, other than any REC deletion and associate linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8,
9, 10, 15, 20, or 25% of the, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 21, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters. Methods of alignment of sequences for comparison are well known in the art. Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith and Waterman, (1970) Adv. Appl. Math. 2:482c, by the homology alignment algorithm of Needleman and Wunsch, (1970) J. Mol. Biol. 48:443, by the search for similarity method of Pearson and Lipman, (1988) Proc. Nat'l. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, WI), or by manual alignment and visual inspection (see, e.g., Brent et al., (2003) Current Protocols in Molecular Biology).
Two examples of algorithms that are suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2.0 algorithms, which are described in Altschul et al., (1977) Nuc. Acids Res. 25:3389-3402; and Altschul et al., (1990) J. Mol. Biol. 215:403-410, respectively. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information.
The percent identity between two amino acid sequences can also be determined using the algorithm of E. Meyers and W. Miller, (1988) Comput. Appl. Biosci. 4: 11-17) which has been incorporated into the ALIGN program (version 2.0), using a PAM120 weight residue table, a gap length penalty of 12 and a gap penalty of 4. In addition, the percent identity between two amino acid sequences can be determined using the Needleman and Wunsch (1970) J. Mol. Biol.
48:444-453) algorithm which has been incorporated into the GAP program in the GCG software package (available at www.gcg.com), using either a Blossom 62 matrix or a PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length weight of 1, 2, 3, 4, 5, or 6.
Sequence information for exemplary REC deletions are provided for 83 naturally- occurring Cas9 orthologs in Table 21.
The amino acid sequences of exemplary Cas9 molecules from different bacterial species are shown below.
Table 21. Amino Acid Sequence of Cas9 Orthologs
Figure imgf000530_0001
BAA- 1640 318
gil304438954lreflZP_07398877.1
Acidaminococcus sp. D21 SEQ ID NO: 167 306 140 511 591 75 511 591 75 gil227824983lreflZP_03989815.1 319
Lactobacillus farciminis KCTC SEQ ID NO: 171 310 140 542 621 85 542 621 85
3681 320
gil336394882lreflZP_08576281.1
Streptococcus sanguinis SK49 SEQ ID NO: 185 324 140 411 490 85 411 490 85 gil422884106lreflZP_l 6930555.1 321
Coprococcus catus GD-7 SEQ ID NO: 172 310 139 556 634 76 556 634 76 gil291520705lemblCBK78998.1 l 322
Streptococcus mutans UA159 SEQ ID NO: 176 314 139 392 470 84 392 470 84 gil24379809lreflNP_721764.11 323
Streptococcus pyogenes Ml SEQ ID NO: 176 314 139 523 600 82 523 600 82
GAS 324
gill3622193lgblAAK33936.1 l
Streptococcus thermophilus SEQ ID NO: 176 314 139 481 558 81 481 558 81 LMD-9 325
gil 1 16628213 Iref 1 YP_820832.11
Fusobacteriumnucleatum SEQ ID NO: 171 308 138 537 614 76 537 614 76 ATCC49256 326
gil34762592lreflZP_00143587.1 l
Planococcus antarcticus DSM SEQ ID NO: 162 299 138 538 614 94 538 614 94
14505 327
gil389815359lreflZP_10206685.1
Treponema denticola ATCC SEQ ID NO: 169 305 137 524 600 81 524 600 81
35405 328
gil42525843lreflNP_970941.11
Solobacterium moorei F0204 SEQ ID NO: 179 314 136 544 619 77 544 619 77 gil320528778lreflZP_08029929.1 329
Staphylococcus SEQ ID NO: 164 299 136 531 606 92 531 606 92 pseudintermedius ED99 330
gil323463801 lgblADX75954.11
Flavobacterium branchiophilum SEQ ID NO: 162 286 125 538 613 63 538 613 63
FL-15 331
gil347536497lreflYP_004843922
.1
Ignavibacterium album JCM SEQ ID NO: 223 329 107 357 432 90 357 432 90
16511 332
gil38581 1609lreflYP_005848005
.1
Bergeyella zoohelcum ATCC SEQ ID NO: 165 261 97 529 604 56 529 604 56
43767 333
gi 1423317190lref IZP_ 17295095.1
Nitrobacter hamburgensis X14 SEQ ID NO: 169 253 85 536 611 48 536 611 48 gil92109262lrefl YP_571550.11 334
Odoribacter laneus YIT 12061 SEQ ID NO: 164 242 79 535 610 63 535 610 63 gil374384763lreflZP_09642280.1 335
Legionella pneumophila str. SEQ ID NO: 164 239 76 402 476 67 402 476 67
Paris 336
gil54296138lreflYP_122507.1 l Bacteroides sp. 20 3 SEQ ID NO: 198 269 72 530 604 83 530 604 83 gi 130131 1869 Iref IZP_07217791.1 337
Akkermansia muciniphila ATCC SEQ ID NO: 136 202 67 348 418 62 348 418 62
BAA-835 338
gill87736489lreflYP_001878601
Prevotella sp. C561 SEQ ID NO: 184 250 67 357 425 78 357 425 78 gil345885718lreflZP_08837074.1 339
Wolinella succinogenes DSM SEQ ID NO: 157 218 36 401 468 60 401 468 60
1740 340
gil34557932lreflNP_907747.11
Alicyclobacillus hesperidum SEQ ID NO: 142 196 55 416 482 61 416 482 61 URH17-3-68 341
gil403744858lreflZP_10953934.1
Caenispirillum salinarum AK4 SEQ ID NO: 161 214 54 330 393 68 330 393 68 gil427429481 lreflZP_l 891951 1.1 342
Eubacterium rectale ATCC SEQ ID NO: 133 185 53 322 384 60 322 384 60 33656 343
gil238924075lreflYP_002937591
.1
Mycoplasma synoviae 53 SEQ ID NO: 187 239 53 319 381 80 319 381 80 gil71894592lref 1 YP_278700.11 344
Porphyromonas sp. oral taxon SEQ ID NO: 150 202 53 309 371 60 309 371 60 279 str. F0450 345
gil402847315 Iref IZP_10895610.1
Streptococcus thermophilus SEQ ID NO: 127 178 139 424 486 81 424 486 81 LMD-9 346
gil 1 16627542lref 1 YP_820161.11
Roseburia inulinivorans DSM SEQ ID NO: 154 204 51 318 380 69 318 380 69
16841 347
gil225377804lreflZP_03755025.1
Methylosinus trichosporium SEQ ID NO: 144 193 50 426 488 64 426 488 64
OB3b 348
gil296446027lreflZP_06887976.1
Ruminococcus albus 8 SEQ ID NO: 139 187 49 351 412 55 351 412 55 gil325677756lreflZP_08157403.1 349
Bifidobacterium longum SEQ ID NO: 183 230 48 370 431 44 370 431 44 DJO10A 350
gill89440764lreflYP_001955845
Enterococcus faecalis TX0012 SEQ ID NO: 123 170 48 327 387 60 327 387 60 gil315149830lgblEFT93846.11 351
Mycoplasma mobile 163K SEQ ID NO: 179 226 48 314 374 79 314 374 79 gil47458868lreflYP_015730.1 l 352
Actinomyces coleocanis DSM SEQ ID NO: 147 193 47 358 418 40 358 418 40
15436 353
gil227494853lreflZP_03925169.1
Dinoroseobacter shibae DFL 12 SEQ ID NO: 138 184 47 338 398 48 338 398 48 gil 159042956lref 1 YP_001531750 354
.1 Actinomyces sp. oral taxon 180 SEQ ID NO: 183 228 46 349 409 40 349 409 40 str. F0310 355
gil315605738lreflZP_07880770.1
Alcanivorax sp. Wl 1-5 SEQ ID NO: 139 183 45 344 404 61 344 404 61 gil407803669lreflZP_l 1 150502.1 356
Aminomonas paucivorans DSM SEQ ID NO: 134 178 45 341 401 63 341 401 63
12260 357
gi 1312879015 Iref IZP_07738815.1
Mycoplasma canis PG 14 SEQ ID NO: 139 183 45 319 379 76 319 379 76 gil384393286lgblEIE39736.11 358
Lactobacillus coryniformis SEQ ID NO: 141 184 44 328 387 61 328 387 61 KCTC 3535 359
gil336393381 lreflZP_08574780.1
Elusimicrobium minutum Peil91 SEQ ID NO: 177 219 43 322 381 47 322 381 47 gill87250660lreflYP_001875142 360
.1
Neisseria meningitidis Z2491 SEQ ID NO: 147 189 43 360 419 61 360 419 61 gil218767588lreflYP_002342100 361
.1
Pasteurella multocida str. Pm70 SEQ ID NO: 139 181 43 319 378 61 319 378 61 gill5602992lreflNP_246064.11 362
Rhodovulum sp. PH10 SEQ ID NO: 141 183 43 319 378 48 319 378 48 gil402849997lreflZP_10898214.1 363
Eubacterium dolichum DSM SEQ ID NO: 131 172 42 303 361 59 303 361 59
3991 364
gill60915782lreflZP_02077990.1
Nitratifractor salsuginis DSM SEQ ID NO: 143 184 42 347 404 61 347 404 61
16511 365
gil319957206lreflYP_004168469
.1
Rhodospirillum rubrum ATCC SEQ ID NO: 139 180 42 314 371 55 314 371 55
1 1 170 366
gil83591793 Irefl YP_425545.11
Clostridium cellulolyticum H10 SEQ ID NO: 137 176 40 320 376 61 320 376 61 gil220930482lreflYP_002507391 367
.1
Helicobacter mustelae 12198 SEQ ID NO: 148 187 40 298 354 48 298 354 48 gi 1291276265 Iref 1 YP_003516037 368
.1
Ilyobacter polytropus DSM 2926 SEQ ID NO: 134 173 40 462 517 63 462 517 63 gil310780384lref 1 YP_003968716 369
.1
Sphaerochaeta globus str. Buddy SEQ ID NO: 163 202 40 335 389 45 335 389 45 gil325972003lreflYP_004248194 370
.1
Staphylococcus lugdunensis SEQ ID NO: 128 167 40 337 391 57 337 391 57 M23590 371
gil315659848lreflZP_07912707.1
Treponema sp. JC4 SEQ ID NO: 144 183 40 328 382 63 328 382 63 gil384109266lreflZP_10010146.1 372
uncultured delta proteobacterium SEQ ID NO: 154 193 40 313 365 55 313 365 55 HF0070 07E19 373 gi 1297182908 Igb 1 ADI 19058.11
Alicycliphilus denitrificans K601 SEQ ID NO: 140 178 39 317 366 48 317 366 48 gil330822845lreflYP_004386148 374
.1
Azospirillum sp. B510 SEQ ID NO: 205 243 39 342 389 46 342 389 46 gil288957741 lreflYP_003448082 375
.1
Bradyrhizobium sp. BTAil SEQ ID NO: 143 181 39 323 370 48 323 370 48 gill48255343lreflYP_001239928 376
.1
Parvibaculum lavamentivorans SEQ ID NO: 138 176 39 327 374 58 327 374 58
DS-1 377
gill54250555lreflYP_00141 1379
.1
Prevotella timonensis CRIS 5C- SEQ ID NO: 170 208 39 328 375 61 328 375 61
B l 378
gil282880052lreflZP_06288774.1
Bacillus smithii 7 3 47FAA SEQ ID NO: 134 171 38 401 448 63 401 448 63 gil365156657lreflZP_09352959.1 379
Cand. Puniceispirillum marinum SEQ ID NO: 135 172 38 344 391 53 344 391 53
IMCC1322 380
gil2940861 1 l lreflYP_003552871
.1
Barnesiella intestinihominis YIT SEQ ID NO: 140 176 37 371 417 60 371 417 60
1 1860 381
gi|404487228lreflZP_l 1022414.1
Ralstonia syzygii R24 SEQ ID NO: 140 176 37 395 440 50 395 440 50 gil344171927lemblCCA84553.1 l 382
Wolinella succinogenes DSM SEQ ID NO: 145 180 36 348 392 60 348 392 60
1740 383
gil34557790lreflNP_907605.11
Mycoplasma gallisepticum str. F SEQ ID NO: 144 177 34 373 416 71 373 416 71 gi 128493171 Olgb IADC31648.11 384
Acidothermus cellulolyticus 1 IB SEQ ID NO: 150 182 33 341 380 58 341 380 58 gill l7929158lreflYP_873709.1 l 385
Mycoplasma ovipneumoniae SEQ ID NO: 156 184 29 381 420 62 381 420 62
SCOl 386
gil363542550lreflZP_09312133.1
Table 22. Amino Acid Sequence of Cas9 Core Domains
Figure imgf000535_0001
Table 23. Identified PAM sequences and corresponding RKR motifs.
Figure imgf000535_0002
PI domains are provided in Tables 24 and 25.
Table 24. Altered PI Domains
Figure imgf000535_0003
Table 25. Other Altered PI Domains
Figure imgf000536_0001
Flavobacterium branchiophilum FL-15 1182 1473 292 KQK
Prevotella timonensis CRIS 5C-B1 957 1218 262 KQQ
Methylosinus trichosporium OB3b 830 1082 253 KRP
Prevotella sp. C561 1099 1424 326 KRY
Mycoplasma gallisepticum str. F 911 1269 359 KTA
Lactobacillus rhamnosus GG 1077 1363 287 KYG
Wolinella succinogenes DSM 1740 811 1059 249 LPN
Streptococcus thermophilus LMD-9 1099 1388 290 MLA
Treponema denticola ATCC 35405 1092 1395 304 NDS
Bergeyella zoohelcum ATCC 43767 1098 1415 318 NEK
Veillonella atypica ACS-134-V-Col7a 1107 1398 292 NGF
Neisseria meningitidis Z2491 835 1082 248 NHN
Ignavibacterium album JCM 16511 1296 1688 393 NKK
Ruminococcus albus 8 853 1156 304 NNF
Streptococcus thermophilus LMD-9 811 1121 311 N K
Barnesiella intestinihominis YIT 11860 871 1153 283 NPV
Azospirillum sp. B510 911 1168 258 PFH
Rhodospirillum rubrum ATCC 11170 863 1173 311 PRG
Planococcus antarcticus DSM 14505 1087 1333 247 PYY
Staphylococcus pseudintermedius ED99 1073 1334 262 QIV
Alcanivorax sp. Wl l-5 843 1113 271 RIE
Bradyrhizobium sp. BTAil 811 1064 254 RIY
Streptococcus pyogenes Ml GAS 1099 1368 270 RKR
Streptococcus mutans UA159 1078 1345 268 RKR
Streptococcus Pyogenes 1099 1368 270 RKR
Bacteroides sp. 20 3 1147 1517 371 RNI
S. aureus 772 1053 282 RNK
Solobacterium moorei F0204 1062 1327 266 RSG
Finegoldia magna ATCC 29328 1081 1348 268 RTE uncultured delta proteobacterium HF0070 07E19 770 1011 242 SGG
Acidaminococcus sp. D21 1064 1358 295 SIG
Eubacterium rectale ATCC 33656 824 1114 291 SKK
Caenispirillum salinarum AK4 1048 1442 395 SLV
Acidothermus cellulolyticus 11B 830 1138 309 SPS
Catenibacterium mitsuokai DSM 15897 1068 1329 262 SPT
Parvibaculum lavamentivorans DS-1 827 1037 211 TGN
Staphylococcus lugdunensis M23590 772 1054 283 TKK
Streptococcus sanguinis SK49 1123 1421 299 TRM
Elusimicrobium minutum Peil91 910 1195 286 TTG Nitrobacter hamburgensis X14 914 1166 253 VAY
Mycoplasma synoviae 53 991 1314 324 VGF
Sphaerochaeta globus str. Buddy 877 1179 303 VKG
Ilyobacter polytropus DSM 2926 837 1092 256 VNG
Rhodovulum sp. PH10 821 1059 239 VPY
Bifidobacterium longum DJO10A 904 1187 284 VRK
Amino acid sequences described in Table 21:
SEQ ID NO: 304
MKRNYILGLDIGITSVGYGI IDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT GNELSTKEQI SRNSKALEEKYVAELQLERLKKDGEVRGS INRFKTSDYVKEAKQLLKVQKAYHQ LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY NALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK PEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP VVKRSFIQS IKVINAI IKKYGLPNDI I IELAREKNSKDAQKMINEMQKRNRQTNERIEEI IRTT GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVK QEENSKKGNRTPFQYLSSSDSKI SYETFKKHILNLAKGKGRI SKTKKEYLLEERDINRFSVQKD FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKS INGGFTSFLRRKWKFKKERNKGYKHHAED ALI IA ADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNQA EFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRI IKTIASKT QS IKKYSTDILGNLYEVKSKKHPQI IKKG
SEQ ID NO: 305
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD
SEQ ID NO: 306
MARILAFDIGI SS IGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKAR LNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLI SPYELRFRALNELLSKQDFARVILHIAKR RGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYE RCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAP KNSPLAFMFVALTRI INLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYE FKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDS LSKLEFKDHL I SFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVT NPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELEC EKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKI SDLQDEKMLEIDHIYPYSRSFDDSYMNKVL VFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDT RYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNH LHHAIDAVI IAYANNS IVKAFSDFKKEQESNSAELYAKKI SELDYKNKRKFFEPFSGFRQKVLD KIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFR VDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILI QTKDMQEPEFVYY AFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKS IGIQNLKVF EKYIVSALGEVTKAEFRQREDFKK
SEQ ID NO: 307
MKRILGLDLGTNS IGWALVNEAENKDERSS IVKLGVRVNPLTVDELTNFEKGKS ITTNADRTLK RGMRRNLQRYKLRRETLTEVLKEHKLITEDTILSENGNRTTFETYRLRAKAVTEEI SLEEFARV LLMINKKRGYKSSRKAKGVEEGTLIDGMDIARELYNNNLTPGELCLQLLDAGKKFLPDFYRSDL QNELDRIWEKQKEYYPEILTDVLKEELRGKKRDAVWAICAKYFVWKENYTEWNKEKGKTEQQER EHKLEGIYSKRKRDEAKRENLQWRVNGLKEKLSLEQLVIVFQEMNTQINNSSGYLGAI SDRSKE LYFNKQTVGQYQMEMLDKNPNASLRNMVFYRQDYLDEFNMLWEKQAVYHKELTEELKKEIRDI I IFYQRRLKSQKGLIGFCEFESRQIEVDIDGKKKIKTVGNRVI SRSSPLFQEFKIWQILNNIEVT VVGKKRKRRKLKENYSALFEELNDAEQLELNGSRRLCQEEKELLAQELFIRDKMTKSEVLKLLF DNPQELDLNFKTIDGNKTGYALFQAYSKMIEMSGHEPVDFKKPVEKVVEYIKAVFDLLNWNTDI LGFNSNEELDNQPYYKLWHLLYSFEGDNTPTGNGRLIQKMTELYGFEKEYATILANVSFQDDYG SLSAKAIHKILPHLKEGNRYDVACVYAGYRHSESSLTREEIANKVLKDRLMLLPKNSLHNPVVE KILNQMVNVINVI IDIYGKPDEIRVELARELKKNAKEREELTKS IAQTTKAHEEYKTLLQTEFG LTNVSRTDILRYKLYKELESCGYKTLYSNTYI SREKLFSKEFDIEHI IPQARLFDDSFSNKTLE ARSVNIEKGNKTAYDFVKEKFGESGADNSLEHYLNNIEDLFKSGKI SKTKYNKLKMAEQDIPDG FIERDLRNTQYIAKKALSMLNEI SHRVVATSGSVTDKLREDWQLIDVMKELNWEKYKALGLVEY FEDRDGRQIGRIKDWTKRNDHRHHAMDALTVAFTKDVFIQYFNNKNASLDPNANEHAIKNKYFQ NGRAIAPMPLREFRAEAKKHLENTLI S IKAKNKVITGNINKTRKKGGVNKNMQQTPRGQLHLET IYGSGKQYLTKEEKVNASFDMRKIGTVSKSAYRDALLKRLYENDNDPKKAFAGKNSLDKQPIWL DKEQMRKVPEKVKIVTLEAIYTIRKEI SPDLKVDKVIDVGVRKILIDRLNEYGNDAKKAFSNLD KNPIWLNKEKGI S IKRVTI SGI SNAQSLHVKKDKDGKPILDENGRNIPVDFVNTGNNHHVAVYY RPVIDKRGQLVVDEAGNPKYELEEVVVSFFEAVTRANLGLPI IDKDYKTTEGWQFLFSMKQNEY FVFPNEKTGFNPKEIDLLDVENYGLISPNLFRVQKFSLKNYVFRHHLETTIKDTSSILRGITWI DFRSSKGLDTIVKVRVNHIGQIVSVGEY
SEQ ID NO: 308
MSRKNYVDDYAI SLDIGNASVGWSAFTPNYRLVRAKGHELIGVRLFDPADTAESRRMARTTRRR YSRRRWRLRLLDALFDQALSEIDPSFLARRKYSWVHPDDENNADCWYGSVLFDSNEQDKRFYEK YPTIYHLRKALMEDDSQHDIREIYLAIHHMVKYRGNFLVEGTLESSNAFKEDELLKLLGRITRY EMSEGEQNSDIEQDDENKLVAPANGQLADALCATRGSRSMRVDNALEALSAVNDLSREQRAIVK AIFAGLEGNKLDLAKIFVSKEFSSENKKILGIYFNKSDYEEKCVQIVDSGLLDDEEREFLDRMQ GQYNAIALKQLLGRSTSVSDSKCASYDAHRANWNLIKLQLRTKENEKDINENYGILVGWKIDSG QRKSVRGESAYENMRKKANVFFKKMIETSDLSETDKNRLIHDIEEDKLFPIQRDSDNGVIPHQL HQNELKQI IKKQGKYYPFLLDAFEKDGKQINKIEGLLTFRVPYFVGPLVVPEDLQKSDNSENHW MVRKKKGEITPWNFDEMVDKDASGRKFIERLVGTDSYLLGEPTLPKNSLLYQEYEVLNELNNVR LSVRTGNHWNDKRRMRLGREEKTLLCQRLFMKGQTVTKRTAENLLRKEYGRTYELSGLSDESKF TSSLSTYGKMCRIFGEKYVNEHRDLMEKIVELQTVFEDKETLLHQLRQLEGI SEADCALLVNTH YTGWGRLSRKLLTTKAGECKI SDDFAPRKHS I IEIMRAEDRNLMEI ITDKQLGFSDWIEQENLG AENGSSLMEVVDDLRVSPKVKRGI IQS IRLIDDI SKAVGKRPSRIFLELADDIQPSGRTI SRKS RLQDLYRNANLGKEFKGIADELNACSDKDLQDDRLFLYYTQLGKDMYTGEELDLDRLSSAYDID HI IPQAVTQNDS IDNRVLVARAENARKTDSFTYMPQIADRMRNFWQILLDNGLI SRVKFERLTR QNEFSEREKERFVQRSLVETRQIMKNVATLMRQRYGNSAAVIGLNAELTKEMHRYLGFSHKNRD INDYHHAQDALCVGIAGQFAANRGFFADGEVSDGAQNSYNQYLRDYLRGYREKLSAEDRKQGRA FGFIVGSMRSQDEQKRVNPRTGEVVWSEEDKDYLRKVMNYRKMLVTQKVGDDFGALYDETRYAA TDPKGIKGIPFDGAKQDTSLYGGFSSAKPAYAVLIESKGKTRLVNVTMQEYSLLGDRPSDDELR KVLAKKKSEYAKANILLRHVPKMQLIRYGGGLMVIKSAGELNNAQQLWLPYEEYCYFDDLSQGK GSLEKDDLKKLLDS ILGSVQCLYPWHRFTEEELADLHVAFDKLPEDEKKNVITGIVSALHADAK TANLS IVGMTGSWRRMNNKSGYTFSDEDEFIFQSPSGLFEKRVTVGELKRKAKKEVNSKYRTNE KRLPTLSGASQP
SEQ ID NO: 309
METQTSNQLITSHLKDYPKQDYFVGLDIGTNSVGWAVTNTSYELLKFHSHKMWGSRLFEEGESA VTRRGFRSMRRRLERRKLRLKLLEELFADAMAQVDSTFFIRLHESKYHYEDKTTGHSSKHILFI DEDYTDQDYFTEYPTIYHLRKDLMENGTDDIRKLFLAVHHILKYRGNFLYEGATFNSNAFTFED VLKQALVNITFNCFDTNSAI SS I SNILMESGKTKSDKAKAIERLVDTYTVFDEVNTPDKPQKEQ VKEDKKTLKAFANLVLGLSANLIDLFGSVEDIDDDLKKLQIVGDTYDEKRDELAKVWGDEIHI I DDCKSVYDAI ILMS IKEPGLTI SQSKVKAFDKHKEDLVILKSLLKLDRNVYNEMFKSDKKGLHN YVHYIKQGRTEETSCSREDFYKYTKKIVEGLADSKDKEYILNEIELQTLLPLQRIKDNGVIPYQ LHLEELKVILDKCGPKFPFLHTVSDGFSVTEKLIKMLEFRIPYYVGPLNTHHNIDNGGFSWAVR KQAGRVTPWNFEEKIDREKSAAAFIKNLTNKCTYLFGEDVLPKSSLLYSEFMLLNELNNVRIDG KALAQGVKQHLIDSIFKQDHKKMTKNRIELFLKDNNYITKKHKPEITGLDGEIKNDLTSYRDMV RILGNNFDVSMAEDI ITDITIFGESKKMLRQTLRNKFGSQLNDETIKKLSKLRYRDWGRLSKKL LKGIDGCDKAGNGAPKTI IELMRNDSYNLMEILGDKFSFMECIEEENAKLAQGQVVNPHDI IDE LALSPAVKRAVWQALRIVDEVAHIKKALPSRIFVEVARTNKSEKKKKDSRQKRLSDLYSAIKKD DVLQSGLQDKEFGALKSGLANYDDAALRSKKLYLYYTQMGRCAYTGNI IDLNQLNTDNYDIDHI YPRSLTKDDSFDNLVLCERTANAKKSDIYPIDNRIQTKQKPFWAFLKHQGLI SERKYERLTRIA PLTADDLSGFIARQLVETNQSVKATTTLLRRLYPDIDVVFVKAENVSDFRHNNNFIKVRSLNHH HHAKDAYLNIVVGNVYHEKFTRNFRLFFKKNGANRTYNLAKMFNYDVICTNAQDGKAWDVKTSM NTVKKMMASNDVRVTRRLLEQSGALADATIYKASVAAKAKDGAYIGMKTKYSVFADVTKYGGMT KIKNAYS I IVQYTGKKGEEIKEIVPLPIYLINRNATDIELIDYVKSVIPKAKDI S IKYRKLCIN QLVKVNGFYYYLGGKTNDKIYIDNAIELVVPHDIATYIKLLDKYDLLRKENKTLKASS ITTS IY INTSTVVSLNKVGIDVFDYFMSKLRTPLYMKMKGNKVDELSSTGRSKFIKMTLEEQS IYLLEV LNLLTNSKTTFDVKPLGITGSRSTIGVKIHNLDEFKI INES ITGLYSNEVTIV
SEQ ID NO: 310
MTKLNQPYGIGLDIGSNS IGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLS RTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEI SPKDKDRFKYEKRLFNDRTDAEFYEDYPSMY HLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYP DLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLK TKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAG MSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTK EVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQI IANQSKYYDWLAAPNPVE AHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREA SANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERH SSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENII TWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLS NHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQ DPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLY FMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGK MKATWRKWHEAGLI SGRKLRNLMLRPDEIDKFAKGFVARQLVETRQI IKLTEQIAAAQYPNTKI IAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVK KFREFNFIGALTHAKK I IAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTI YAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKI SAQNASKI ASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDT YYRNYQELWLSRENQKLLKKLFS IKYEKTQMNHDALQVYKAI IDQVEKFFKLYDINQFRAKLSD AIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQ IVYQSPSGLFKRRIPLADL SEQ ID NO: 311
MTKEYYLGLDVGTNSVGWAVTDSQYNLCKFKKKDMWGIRLFESANTAKDRRLQRGNRRRLERKK QRIDLLQEIFSPEICKIDPTFFIRLNESRLHLEDKSNDFKYPLFIEKDYSDIEYYKEFPTIFHL RKHLIESEEKQDIRLIYLALHNI IKTRGHFLIDGDLQSAKQLRPILDTFLLSLQEEQNLSVSLS ENQKDEYEEILKNRS IAKSEKVKKLKNLFEI SDELEKEEKKAQSAVIENFCKFIVGNKGDVCKF LRVSKEELEIDSFSFSEGKYEDDIVKNLEEKVPEKVYLFEQMKAMYDWNILVDILETEEYI SFA KVKQYEKHKTNLRLLRDI ILKYCTKDEYNRMFNDEKEAGSYTAYVGKLKKNNKKYWIEKKRNPE EFYKSLGKLLDKIEPLKEDLEVLTMMIEECKNHTLLPIQKNKDNGVIPHQVHEVELKKILENAK KYYSFLTETDKDGYSVVQKIES IFRFRIPYYVGPLSTRHQEKGSNVWMVRKPGREDRIYPWNME EI IDFEKSNENFITRMTNKCTYLIGEDVLPKHSLLYSKYMVLNELNNVKVRGKKLPTSLKQKVF EDLFENKSKVTGKNLLEYLQIQDKDIQIDDLSGFDKDFKTSLKSYLDFKKQIFGEEIEKES IQN MIEDI IKWITIYGNDKEMLKRVIRANYSNQLTEEQMKKITGFQYSGWGNFSKMFLKGI SGSDVS TGETFDI ITAMWETDNNLMQILSKKFTFMDNVEDFNSGKVGKIDKITYDSTVKEMFLSPENKRA VWQTIQVAEEIKKVMGCEPKKIFIEMARGGEKVKKRTKSRKAQLLELYAACEEDCRELIKEIED RDERDFNSMKLFLYYTQFGKCMYSGDDIDINELIRGNSKWDRDHIYPQSKIKDDS IDNLVLVNK TYNAKKSNELLSEDIQKKMHSFWLSLLNKKLITKSKYDRLTRKGDFTDEELSGFIARQLVETRQ STKAIADIFKQIYSSEVVYVKSSLVSDFRKKPLNYLKSRRVNDYHHAKDAYLNIVVGNVYNKKF TSNPIQWMKKNRDTNYSLNKVFEHDVVINGEVIWEKCTYHEDTNTYDGGTLDRIRKIVERDNIL YTEYAYCEKGELFNATIQNKNGNSTVSLKKGLDVKKYGGYFSANTSYFSLIEFEDKKGDRARHI IGVPIYIANMLEHSPSAFLEYCEQKGYQNVRILVEKIKKNSLLI INGYPLRIRGENEVDTSFKR AIQLKLDQKNYELVRNIEKFLEKYVEKKGNYPIDENRDHITHEKMNQLYEVLLSKMKKFNKKGM ADPSDRIEKSKPKFIKLEDLIDKINVINKMLNLLRCDNDTKADLSLIELPKNAGSFVVKKNTIG KSKI ILVNQSVTGLYENRREL
SEQ ID NO: 312
MARDYSVGLDIGTSSVGWAAIDNKYHLIRAKSKNLIGVRLFDSAVTAEKRRGYRTTRRRLSRRH WRLRLLNDIFAGPLTDFGDENFLARLKYSWVHPQDQSNQAHFAAGLLFDSKEQDKDFYRKYPTI YHLRLALMNDDQKHDLREVYLAIHHLVKYRGHFLIEGDVKADSAFDVHTFADAIQRYAESNNSD ENLLGKIDEKKLSAALTDKHGSKSQRAETAETAFDILDLQSKKQIQAILKSVVGNQANLMAIFG LDSSAI SKDEQKNYKFSFDDADIDEKIADSEALLSDTEFEFLCDLKAAFDGLTLKMLLGDDKTV SAAMVRRFNEHQKDWEYIKSHIRNAKNAGNGLYEKSKKFDGINAAYLALQSDNEDDRKKAKKIF QDEI SSADIPDDVKADFLKKIDDDQFLPIQRTKNNGTIPHQLHRNELEQI IEKQGIYYPFLKDT YQENSHELNKITALINFRVPYYVGPLVEEEQKIADDGKNIPDPTNHWMVRKSNDTITPWNLSQV VDLDKSGRRFIERLTGTDTYLIGEPTLPKNSLLYQKFDVLQELNNIRVSGRRLDIRAKQDAFEH LFKVQKTVSATNLKDFLVQAGYI SEDTQIEGLADVNGKNFN ALTTYNYLVSVLGREFVENPSN EELLEEITELQTVFEDKKVLRRQLDQLDGLSDHNREKLSRKHYTGWGRI SKKLLTTKIVQNADK IDNQTFDVPRMNQS I IDTLYNTKMNLMEI IN AEDDFGVRAWIDKQNTTDGDEQDVYSLIDELA GPKEIKRGIVQSFRILDDITKAVGYAPKRVYLEFARKTQESHLTNSRKNQLSTLLKNAGLSELV TQVSQYDAAALQNDRLYLYFLQQGKDMYSGEKLNLDNLSNYDIDHI IPQAYTKDNSLDNRVLVS NITNRRKSDSSNYLPALIDKMRPFWSVLSKQGLLSKHKFANLTRTRDFDDMEKERFIARSLVET RQIIKNVASLIDSHFGGETKAVAIRSSLTADMRRYVDIPKNRDINDYHHAFDALLFSTVGQYTE NSGLMKKGQLSDSAGNQYNRYIKEWIHAARLNAQSQRVNPFGFVVGSMRNAAPGKLNPETGEIT PEENADWS IADLDYLHKVMNFRKITVTRRLKDQKGQLYDESRYPSVLHDAKSKAS INFDKHKPV DLYGGFSSAKPAYAALIKFKNKFRLVNVLRQWTYSDKNSEDYILEQIRGKYPKAEMVLSHIPYG QLVKKDGALVTI SSATELHNFEQLWLPLADYKLINTLLKTKEDNLVDILHNRLDLPEMTIESAF YKAFDS ILSFAFNRYALHQNALVKLQAHRDDFNALNYEDKQQTLERILDALHASPASSDLKKIN LSSGFGRLFSPSHFTLADTDEFIFQSVTGLFSTQKTVAQLYQETK
SEQ ID NO: 313
MVYDVGLDIGTGSVGWVALDENGKLARAKGKNLVGVRLFDTAQTAADRRGFRTTRRRLSRRKWR LRLLDELFSAEINEIDSSFFQRLKYSYVHPKDEENKAHYYGGYLFPTEEETKKFHRSYPTIYHL RQELMAQPNKRFDIREIYLAIHHLVKYRGHFLSSQEKITIGSTYNPEDLANAIEVYADEKGLSW ELNNPEQLTEI I SGEAGYGLNKSMKADEALKLFEFDNNQDKVAIKTLLAGLTGNQIDFAKLFGK DISDKDEAKLWKLKLDDEALEEKSQTILSQLTDEEIELFHAVVQAYDGFVLIGLLNGADSVSAA MVQLYDQHREDRKLLKSLAQKAGLKHKRFSEIYEQLALATDEATIKNGI STARELVEESNLSKE VKEDTLRRLDENEFLPKQRTKANSVIPHQLHLAELQKILQNQGQYYPFLLDTFEKEDGQDNKIE ELLRFRIPYYVGPLVTKKDVEHAGGDADNHWVERNEGFEKSRVTPWNFDKVFNRDKAARDFIER LTGNDTYLIGEKTLPQNSLRYQLFTVLNELNNVRVNGKKFDSKTKADLINDLFKARKTVSLSAL KDYLKAQGKGDVTITGLADESKFNSSLSSYNDLKKTFDAEYLENEDNQETLEKI IEIQTVFEDS KIASRELSKLPLDDDQVKKLSQTHYTGWGRLSEKLLDSKI IDERGQKVS ILDKLKSTSQNFMS I INNDKYGVQAWITEQNTGSSKLTFDEKVNELTTSPANKRGIKQSFAVLNDIKKAMKEEPRRVYL EFAREDQTSVRSVPRYNQLKEKYQSKSLSEEAKVLKKTLDGNKNKMSDDRYFLYFQQQGKDMYT GRPINFERLSQDYDIDHI IPQAFTKDDSLDNRVLVSRPENARKSDSFAYTDEVQKQDGSLWTSL LKSGFINRKKYERLTKAGKYLDGQKTGFIARQLVETRQI IKNVASLIEGEYENSKAVAIRSEIT ADMRLLVGIKKHREINSFHHAFDALLITAAGQYMQNRYPDRDSTNVYNEFDRYTNDYLKNLRQL SSRDEVRRLKSFGFVVGTMRKGNEDWSEENTSYLRKVMMFKNILTTKKTEKDRGPLNKETIFSP KSGKKLIPLNSKRSDTALYGGYSNVYSAYMTLVRANGKNLLIKIPI S IANQIEVGNLKINDYIV NNPAIKKFEKILI SKLPLGQLVNEDGNLIYLASNEYRHNAKQLWLSTTDADKIAS I SENSSDEE LLEAYDILTSENVKNRFPFFKKDIDKLSQVRDEFLDSDKRIAVIQTILRGLQIDAAYQAPVKI I SKKVSDWHKLQQSGGIKLSDNSEMIYQSATGIFETRVKI SDLL
SEQ ID NO: 314
IVDYCIGLDLGTGSVGWAVVDMNHRLMKRNGKHLWGSRLFSNAETAANRRASRS IRRRYNKRRE RIRLLRAILQDMVLEKDPTFFIRLEHTSFLDEEDKAKYLGTDYKDNYNLFIDEDFNDYTYYHKY PTIYHLRKALCESTEKADPRLIYLALHHIVKYRGNFLYEGQKFNMDASNIEDKLSDIFTQFTSF NNIPYEDDEKKNLEILEILKKPLSKKAKVDEVMTLIAPEKDYKSAFKELVTGIAGNKMNVTKMI LCEPIKQGDSEIKLKFSDSNYDDQFSEVEKDLGEYVEFVDALHNVYSWVELQTIMGATHTDNAS I SEAMVSRYNKHHDDLKLLKDCIKNNVPNKYFDMFRNDSEKSKGYYNYINRPSKAPVDEFYKYV KKCIEKVDTPEAKQILNDIELENFLLKQNSRTNGSVPYQMQLDEMIKI IDNQAEYYPILKEKRE QLLS ILTFRIPYYFGPLNETSEHAWIKRLEGKENQRILPWNYQDIVDVDATAEGFIKRMRSYCT YFPDEEVLPKNSLIVSKYEVYNELNKIRVDDKLLEVDVKNDIYNELFMKNKTVTEKKLKNWLVN NQCCSKDAEIKGFQKENQFSTSLTPWIDFTNIFGKIDQSNFDLIENI IYDLTVFEDKKIMKRRL KKKYALPDDKVKQILKLKYKDWSRLSKKLLDGIVADNRFGSSVTVLDVLEMSRLNLMEI INDKD LGYAQMIEEATSCPEDGKFTYEEVERLAGSPALKRGIWQSLQIVEEITKVMKCRPKYIYIEFER SEEAKERTESKIKKLENVYKDLDEQTKKEYKSVLEELKGFDNTKKI SSDSLFLYFTQLGKCMYS GKKLDIDSLDKYQIDHIVPQSLVKDDSFDNRVLVVPSENQRKLDDLVVPFDIRDKMYRFWKLLF DHELI SPKKFYSLIKTEYTERDEERFINRQLVETRQITKNVTQI IEDHYSTTKVAAIRANLSHE FRVKNHIYKNRDINDYHHAHDAYIVALIGGFMRDRYPNMHDSKAVYSEYMKMFRKNKNDQKRWK DGFVINSMNYPYEVDGKLIWNPDLINEIKKCFYYKDCYCTTKLDQKSGQLFNLTVLSNDAHADK GVTKAVVPVNKNRSDVHKYGGFSGLQYTIVAIEGQKKKGKKTELVKKI SGVPLHLKAAS INEKI NYIEEKEGLSDVRI IKDNIPVNQMIEMDGGEYLLTSPTEYVNARQLVLNEKQCALIADIYNAIY KQDYDNLDDILMIQLYIELTNKMKVLYPAYRGIAEKFESMNENYVVI SKEEKANI IKQMLIVMH RGPQNGNIVYDDFKI SDRIGRLKTKNHNLNNIVFI SQSPTGIYTKKYKL SEQ ID NO: 315
MKSEKKYYIGLDVGTNSVGWAVTDEFYNILRAKGKDLWGVRLFEKADTAANTRIFRSGRRRNDR KGMRLQILREIFEDEIKKVDKDFYDRLDESKFWAEDKKVSGKYSLFNDKNFSDKQYFEKFPTIF HLRKYLMEEHGKVDIRYYFLAINQMMKRRGHFLIDGQI SHVTDDKPLKEQLILLINDLLKIELE EELMDS IFEILADVNEKRTDKKNNLKELIKGQDFNKQEGNILNS IFES IVTGKAKIKNI I SDED ILEKIKEDNKEDFVLTGDSYEENLQYFEEVLQENITLFNTLKSTYDFLILQS ILKGKSTLSDAQ VERYDEHKKDLEILKKVIKKYDEDGKLFKQVFKEDNGNGYVSYIGYYLNKNKKITAKKKI SNIE FTKYVKGILEKQCDCEDEDVKYLLGKIEQENFLLKQI SS INSVIPHQIHLFELDKILENLAKNY PSFNNKKEEFTKIEKIRKTFTFRIPYYVGPLNDYHKNNGGNAWIFRNKGEKIRPWNFEKIVDLH KSEEEFIKRMLNQCTYLPEETVLPKSS ILYSEYMVLNELNNLRINGKPLDTDVKLKLIEELFKK KTKVTLKS IRDYMVRNNFADKEDFDNSEKNLEIASNMKSYIDFNNILEDKFDVEMVEDLIEKIT IHTGNKKLLKKYIEETYPDLSSSQIQKI INLKYKDWGRLSRKLLDGIKGTKKETEKTDTVINFL RNSSDNLMQI IGSQNYSFNEYIDKLRKKYIPQEI SYEVVENLYVSPSVKKMIWQVIRVTEEITK VMGYDPDKIFIEMAKSEEEKKTTI SRKNKLLDLYKAIKKDERDSQYEKLLTGLNKLDDSDLRSR KLYLYYTQMGRDMYTGEKIDLDKLFDSTHYDKDHI IPQSMKKDDS I INNLVLVNKNANQTTKGN IYPVPSS IRNNPKIYNYWKYLMEKEFI SKEKYNRLIRNTPLTNEELGGFINRQLVETRQSTKAI KELFEKFYQKSKI IPVKASLASDLRKDMNTLKSREVNDLHHAHDAFLNIVAGDVWNREFTSNPI NYVKENREGDKVKYSLSKDFTRPRKSKGKVIWTPEKGRKLIVDTLNKPSVLI SNESHVKKGELF NATIAGKKDYKKGKIYLPLKKDDRLQDVSKYGGYKAINGAFFFLVEHTKSKKRIRS IELFPLHL LSKFYEDKNTVLDYAINVLQLQDPKI I IDKINYRTEI I IDNFSYLISTKSNDGSITVKPNEQMY WRVDEI SNLKKIENKYKKDAILTEEDRKIMESYIDKIYQQFKAGKYKNRRTTDTI IEKYEI IDL DTLDNKQLYQLLVAFI SLSYKTSNNAVDFTVIGLGTECGKPRITNLPDNTYLVYKS ITGIYEKR IRIK
SEQ ID NO: 316
MKLRGIEDDYS IGLDMGTSSVGWAVTDERGTLAHFKRKPTWGSRLFREAQTAAVARMPRGQRRR YVRRRWRLDLLQKLFEQQMEQADPDFFIRLRQSRLLRDDRAEEHADYRWPLFNDCKFTERDYYQ RFPTIYHVRSWLMETDEQADIRLIYLALHNIVKHRGNFLREGQSLSAKSARPDEALNHLRETLR VWSSERGFECS IADNGS ILAMLTHPDLSPSDRRKKIAPLFDVKSDDAAADKKLGIALAGAVIGL KTEFKNIFGDFPCEDSS IYLSNDEAVDAVRSACPDDCAELFDRLCEVYSAYVLQGLLSYAPGQT I SANMVEKYRRYGEDLALLKKLVKIYAPDQYRMFFSGATYPGTGIYDAAQARGYTKYNLGPKKS EYKPSESMQYDDFRKAVEKLFAKTDARADERYRMMMDRFDKQQFLRRLKTSDNGS IYHQLHLEE LKAIVENQGRFYPFLKRDADKLVSLVSFRIPYYVGPLSTRNARTDQHGENRFAWSERKPGMQDE PIFPWNWES I IDRSKSAEKFILRMTGMCTYLQQEPVLPKSSLLYEEFCVLNELNGAHWS IDGDD EHRFDAADREGI IEELFRRKRTVSYGDVAGWMERERNQIGAHVCGGQGEKGFESKLGSYIFFCK DVFKVERLEQSDYPMIERI ILWNTLFEDRKILSQRLKEEYGSRLSAEQIKTICKKRFTGWGRLS EKFLTGITVQVDEDSVS IMDVLREGCPVSGKRGRAMVMMEILRDEELGFQKKVDDFNRAFFAEN AQALGVNELPGSPAVRRSLNQS IRIVDEIAS IAGKAPANIFIEVTRDEDPKKKGRRTKRRYNDL KDALEAFKKEDPELWRELCETAPNDMDERLSLYFMQRGKCLYSGRAIDIHQLSNAGIYEVDHI I PRTYVKDDSLENKALVYREENQRKTDMLLIDPEIRRRMSGYWRMLHEAKLIGDKKFRNLLRSRI DDKALKGFIARQLVETGQMVKLVRSLLEARYPETNI I SVKAS I SHDLRTAAELVKCREANDFHH AHDAFLACRVGLFIQKRHPCVYENPIGLSQVVRNYVRQQADIFKRCRTIPGSSGFIVNSFMTSG FDKETGEIFKDDWDAEAEVEGIRRSLNFRQCFI SRMPFEDHGVFWDATIYSPRAKKTAALPLKQ GLNPSRYGSFSREQFAYFFIYKARNPRKEQTLFEFAQVPVRLSAQIRQDENALERYARELAKDQ GLEFIRIERSKILKNQLIEIDGDRLCITGKEEVRNACELAFAQDEMRVIRMLVSEKPVSRECVI SLFNRILLHGDQASRRLSKQLKLALLSEAFSEASDNVQRNVVLGLIAIFNGSTNMVNLSDIGGS KFAGNVRIKYKKELASPKVNVHLIDQSVTGMFERRTKIGL
SEQ ID NO: 317
MENKQYYIGLDVGTNSVGWAVTDTSYNLLRAKGKDMWGARLFEKANTAAERRTKRTSRRRSERE KARKAMLKELFADEINRVDPSFFIRLEESKFFLDDRSENNRQRYTLFNDATFTDKDYYEKYKTI FHLRSALINSDEKFDVRLVFLAILNLFSHRGHFLNASLKGDGDIQGMDVFYNDLVESCEYFEIE LPRITNIDNFEKILSQKGKSRTKILEELSEELS I SKKDKSKYNLIKLI SGLEASVVELYNIEDI QDENKKIKIGFRESDYEESSLKVKEI IGDEYFDLVERAKSVHDMGLLSNI IGNSKYLCEARVEA YENHHKDLLKIKELLKKYDKKAYNDMFRKMTDKNYSAYVGSVNSNIAKERRSVDKRKIEDLYKY IEDTALKNIPDDNKDKIEILEKIKLGEFLKKQLTASNGVIPNQLQSRELRAILKKAENYLPFLK EKGEKNLTVSEMI IQLFEFQIPYYVGPLDKNPKKDNKANSWAKIKQGGRILPWNFEDKVDVKGS RKEFIEKMVRKCTYI SDEHTLPKQSLLYEKFMVLNEINNIKIDGEKI SVEAKQKIYNDLFVKGK KVSQKDIKKELI SLNIMDKDSVLSGTDTVCNAYLSS IGKFTGVFKEEINKQS IVDMIEDI IFLK TVYGDEKRFVKEEIVEKYGDEIDKDKIKRILGFKFSNWGNLSKSFLELEGADVGTGEVRS HQS LWETNFNLMELLSSRFTYMDELEKRVKKLEKPLSEWTIEDLDDMYLSSPVKRMIWQSMKIVDEI QTVIGYAPKRIFVEMTRSEGEKVRTKSRKDRLKELYNGIKEDSKQWVKELDSKDESYFRSKKMY LYYLQKGRCMYSGEVIELDKLMDDNLYDIDHIYPRSFVKDDSLDNLVLVKKEINNRKQNDPITP QIQASCQGFWKILHDQGFMSNEKYSRLTRKTQEFSDEEKLSFINRQIVETGQATKCMAQILQKS MGEDVDVVFSKARLVSEFRHKFELFKSRLINDFHHANDAYLNIVVGNSYFVKFTRNPANFIKDA RKNPDNPVYKYHMDRFFERDVKSKSEVAWIGQSEGNSGTIVIVKKTMAKNSPLITKKVEEGHGS ITKETIVGVKEIKFGRNKVEKADKTPKKPNLQAYRPIKTSDERLC ILRYGGRTS I S I SGYCLV EYVKKRKTIRSLEAIPVYLGRKDSLSEEKLLNYFRYNLNDGGKDSVSDIRLCLPFI STNSLVKI DGYLYYLGGKNDDRIQLYNAYQLKMKKEEVEYIRKIEKAVSMSKFDEIDREKNPVLTEEKNIEL YNKIQDKFENTVFSKRMSLVKYNKKDLSFGDFLKNKKSKFEEIDLEKQCKVLY I IFNLSNLKE VDLSDIGGSKSTGKCRCKKNITNYKEFKLIQQS ITGLYSCEKDLMTI
SEQ ID NO: 318
MKNLKEYYIGLDIGTASVGWAVTDESYNIPKFNGKKMWGVRLFDDAKTAEERRTQRGSRRRLNR RKERINLLQDLFATEI SKVDPNFFLRLDNSDLYREDKDEKLKSKYTLFNDKDFKDRDYHKKYPT IHHLIMDLIEDEGKKDIRLLYLACHYLLKNRGHFIFEGQKFDTKNSFDKS INDLKIHLRDEY I DLEFNNEDLIEI ITDTTLNKTNKKKELKNIVGDTKFLKAI SAIMIGSSQKLVDLFEDGEFEETT VKSVDFSTTAFDDKYSEYEEALGDTI SLLNILKS IYDSS ILENLLKDADKSKDGNKYI SKAFVK KFNKHGKDLKTLKRI IKKYLPSEYA IFRNKS INDNYVAYTKS ITSNKRTKASKFTKQEDFYK FIKKHLDTIKETKLNSSENEDLKLIDEMLTDIEFKTFIPKLKSSDNGVIPYQLKLMELKKILDN QSKYYDFLNESDEYGTVKDKVES IMEFRIPYYVGPLNPDSKYAWIKRENTKITPWNFKDIVDLD SSREEFIDRLIGRCTYLKEEKVLPKASLIYNEFMVLNELNNLKLNEFLITEEMKKAIFEELFKT KKKVTLKAVSNLLKKEFNLTGDILLSGTDGDFKQGLNSYIDFKNI IGDKVDRDDYRIKIEEI IK LIVLYEDDKTYLKKKIKSAYKNDFTDDEIKKIAALNYKDWGRLSKRFLTGIEGVDKTTGEKGS I IYFMREYNLNLMELMSGHYTFTEEVEKLNPVENRELCYEMVDELYLSPSVKRMLWQSLRVVDEI KRIIGKDPKKIFIEMARAKEAKNSRKESRKNKLLEFYKFGKKAFINEIGEERYNYLLNEINSEE ESKFRWDNLYLYYTQLGRCMYSLEPIDLADLKSN IYDQDHIYPKSKIYDDSLENRVLVKKNLN HEKGNQYPIPEKVLNKNAYGFWKILFDKGLIGQKKYTRLTRRTPFEERELAEFIERQIVETRQA TKETANLLK ICQDSEIVYSKAENASRFRQEFDI IKCRTVNDLHHMHDAYL IVVGNVYNTKFT KNPLNFIKDKDNVRSYNLENMFKYDVVRGSYTAWIADDSEGNVKAATIKKVKRELEGKNYRFTR MSYIGTGGLYDQNLMRKGKGQIPQKENTNKSNIEKYGGYNKASSAYFALIESDGKAGRERTLET IPIMVYNQEKYGNTEAVDKYLKDNLELQDPKILKDKIKINSLIKLDGFLYNIKGKTGDSLSIAG SVQLIVNKEEQKLIKKMDKFLVKKKDNKDIKVTSFD IKEEELIKLYKTLSDKLNNGIYSNKRN NQAKNI SEALDKFKEI S IEEKIDVLNQI ILLFQSYNNGCNLKS IGLSAKTGVVFIPKKLNYKEC KLINQSITGLFENEVDLLNL
SEQ ID NO: 319
MGKMYYLGLDIGTNSVGYAVTDPSYHLLKFKGEPMWGAHVFAAGNQSAERRSFRTSRRRLDRRQ QRVKLVQEIFAPVI SPIDPRFFIRLHESALWRDDVAETDKHIFFNDPTYTDKEYYSDYPTIHHL IVDLMESSEKHDPRLVYLAVAWLVAHRGHFLNEVDKDNIGDVLSFDAFYPEFLAFLSDNGVSPW VCESKALQATLLSRNSVNDKYKALKSLIFGSQKPEDNFDANI SEDGLIQLLAGKKVKVNKLFPQ ESNDASFTLNDKEDAIEEILGTLTPDECEWIAHIRRLFDWAIMKHALKDGRTI SESKVKLYEQH HHDLTQLKYFVKTYLAKEYDDIFRNVDSETTKNYVAYSYHVKEVKGTLPKNKATQEEFCKYVLG KVKNIECSEADKVDFDEMIQRLTDNSFMPKQVSGENRVIPYQLYYYELKTILNKAASYLPFLTQ CGKDAI SNQDKLLS IMTFRIPYFVGPLRKDNSEHAWLERKAGKIYPWNFNDKVDLDKSEEAFIR RMTNTCTYYPGEDVLPLDSLIYEKFMILNEINNIRIDGYPI SVDVKQQVFGLFEKKRRVTVKDI QNLLLSLGALDKHGKLTGIDTTIHSNYNTYHHFKSLMERGVLTRDDVERIVERMTYSDDTKRVR LWLNNNYGTLTADDVKHI SRLRKHDFGRLSKMFLTGLKGVHKETGERAS ILDFMWNTNDNLMQL LSECYTFSDEITKLQEAYYAKAQLSLNDFLDSMYI SNAVKRPIYRTLAVVNDIRKACGTAPKRI FIEMARDGESKKKRSVTRREQIKNLYRS IRKDFQQEVDFLEKILENKSDGQLQSDALYLYFAQL GRDMYTGDPIKLEHIKDQSFYNIDHIYPQSMVKDDSLDNKVLVQSEINGEKSSRYPLDAAIRNK MKPLWDAYYNHGLI SLKKYQRLTRSTPFTDDEKWDFINRQLVETRQSTKALAILLKRKFPDTEI VYSKAGLSSDFRHEFGLVKSRNINDLHHAKDAFLAIVTGNVYHERFNRRWFMVNQPYSVKTKTL FTHS IKNGNFVAWNGEEDLGRIVKMLKQNKNTIHFTRFSFDRKEGLFDIQPLKASTGLVPRKAG LDVVKYGGYDKSTAAYYLLVRFTLEDKKTQHKLMMIPVEGLYKARIDHDKEFLTDYAQTTI SEI LQKDKQKVI IMFPMGTRHIKLNSMI S IDGFYLS IGGKSSKGKSVLCHAMVPLIVPHKIECYIK AMESFARKFKENNKLRIVEKFDKITVEDNLNLYELFLQKLQHNPYNKFFSTQFDVLTNGRSTFT KLSPEEQVQTLLNILS IFKTCRSSGCDLKS INGSAQAARIMI SADLTGLSKKYSDIRLVEQSAS GLFVSKSQNLLEYL
SEQ ID NO: 320
MTKKEQPYNIGLDIGTSSVGWAVTNDNYDLLNIKKKNLWGVRLFEEAQTAKETRLNRSTRRRYR RRKNRINWLNEIFSEELAKTDPSFLIRLQNSWVSKKDPDRKRDKYNLFIDGPYTDKEYYREFPT IFHLRKELILNKDKADIRLIYLALH ILKYRGNFTYEHQKF I SNLNNNLSKELIELNQQLIKY DI SFPDDCDWNHI SDILIGRGNATQKSSNILKDFTLDKETKKLLKEVINLILGNVAHLNTIFKT SLTKDEEKLNFSGKDIESKLDDLDS ILDDDQFTVLDAANRIYSTITLNEILNGESYFSMAKVNQ YENHAIDLCKLRDMWHTTKNEEAVEQSRQAYDDYINKPKYGTKELYTSLKKFLKVALPTNLAKE AEEKI SKGTYLVKPRNSENGVVPYQLNKIEMEKI IDNQSQYYPFLKENKEKLLS ILSFRIPYYV GPLQSAEKNPFAWMERKSNGHARPWNFDEIVDREKSSNKFIRRMTVTDSYLVGEPVLPKNSLIY QRYEVLNELN IRITENLKTNPIGSRLTVETKQRIYNELFKKYKKVTVKKLTKWLIAQGYYKNP ILIGLSQKDEFNSTLTTYLDMKKIFGSSFMEDNKNYDQIEELIEWLTIFEDKQILNEKLHSSKY SYTPDQIKKI SNMRYKGWGRLSKKILMDITTETNTPQLLQLSNYS ILDLMWATNNNFI S IMSND KYDFKNYIENHNLNKNEDQNI SDLVNDIHVSPALKRGITQS IKIVQEIVKFMGHAPKHIFIEVT RETKKSEITTSREKRIKRLQSKLLNKANDFKPQLREYLVPNKKIQEELKKHKNDLSSERIMLYF LQNGKSLYSEESLNINKLSDYQVDHILPRTYIPDDSLENKALVLAKENQRKADDLLLNSNVIDR NLERWTYMLNNNMIGLKKFKNLTRRVITDKDKLGFIHRQLVQTSQMVKGVANILDNMYKNQGTT CIQARANLSTAFRKALSGQDDTYHFKHPELVKNRNVNDFHHAQDAYLASFLGTYRLRRFPTNEM LLMNGEYNKFYGQVKELYSKKKKLPDSRKNGFI I SPLVNGTTQYDRNTGEI IWNVGFRDKILKI FNYHQCNVTRKTEIKTGQFYDQTIYSPKNPKYKKLIAQKKDMDPNIYGGFSGDNKSSITIVKID NNKIKPVAIPIRLINDLKDKKTLQNWLEENVKHKKS IQI IKNNVPIGQI IYSKKVGLLSLNSDR EVANRQQLILPPEHSALLRLLQIPDEDLDQILAFYDKNILVEILQELITKMKKFYPFYKGEREF LIANIENFNQATTSEKVNSLEELITLLHANSTSAHLIFNNIEKKAFGRKTHGLTLNNTDFIYQS VTGLYETRIHIE
SEQ ID NO: 321
MTKFNKNYS IGLDIGVSSVGYAVVTEDYRVPAFKFKVLGNTEKEKIKKNLIGSTTFVSAQPAKG TRVFRVNRRRIDRRNHRITYLRDIFQKEIEKVDKNFYRRLDESFRVLGDKSEDLQIKQPFFGDK ELETAYHKKYPTIYHLRKHLADADKNSPVADIREVYMAI SHILKYRGHFLTLDKINPNNINMQN SWIDFIESCQEVFDLEI SDESKNIADIFKSSENRQEKVKKILPYFQQELLKKDKS IFKQLLQLL FGLKTKFKDCFELEEEPDLNFSKENYDENLENFLGSLEEDFSDVFAKLKVLRDTILLSGMLTYT GATHARFSATMVERYEEHRKDLQRFKFFIKQNLSEQDYLDIFGRKTQNGFDVDKETKGYVGYIT NKMVLTNPQKQKTIQQNFYDYI SGKITGIEGAEYFLNKI SDGTFLRKLRTSDNGAIPNQIHAYE LEKI IERQGKDYPFLLENKDKLLS ILTFKIPYYVGPLAKGSNSRFAWIKRATSSDILDDNDEDT RNGKIRPWNYQKLINMDETRDAFITNLIGNDI ILLNEKVLPKRSLIYEEVMLQNELTRVKYKDK YGKAHFFDSELRQNI INGLFKNNSKRVNAKSLIKYLSDNHKDLNAIEIVSGVEKGKSFNSTLKT YNDLKTIFSEELLDSEIYQKELEEI IKVITVFDDKKSIKNYLTKFFGHLEILDEEKINQLSKLR YSGWGRYSAKLLLDIRDEDTGFNLLQFLRNDEENRNLTKLI SDNTLSFEPKIKDIQSKSTIEDD IFDEIKKLAGSPAIKRGILNS IKIVDELVQI IGYPPHNIVIEMARENMTTEEGQKKAKTRKTKL ESALKNIENSLLENGKVPHSDEQLQSEKLYLYYLQNGKDMYTLDKTGSPAPLYLDQLDQYEVDH I IPYSFLPIDS IDNKVLTHRENNQQKLNNIPDKETVANMKPFWEKLYNAKLI SQTKYQRLTTSE RTPDGVLTESMKAGFIERQLVETRQI IKHVARILDNRFSDTKI ITLKSQLITNFRNTFHIAKIR ELNDYHHAHDAYLAVVVGQTLLKVYPKLAPELIYGHHAHFNRHEENKATLRKHLYS IMRFFNN PDSKVSKDIWDCNRDLPI IKDVIYNSQINFVKRTMIKKGAFYNQNPVGKFNKQLAANNRYPLKT KALCLDTS IYGGYGPMNSALS I I I IAERFNEKKGKIETVKEFHDIFI IDYEKFNNNPFQFLNDT SENGFLKKNNINRVLGFYRIPKYSLMQKIDGTRMLFESKSNLHKATQFKLTKTQNELFFHMKRL LTKSNLMDLKSKSAIKESQNFILKHKEEFD I SNQLSAFSQKMLGNTTSLKNLIKGYNERKIKE IDIRDETIKYFYDNFIKMFSFVKSGAPKDINDFFDNKCTVARMRPKPDKKLLNATLIHQS ITGL YETRIDLSKLGED
SEQ ID NO: 322
MKQEYFLGLDMGTGSLGWAVTDSTYQVMRKHGKALWGTRLFESASTAEERRMFRTARRRLDRRN WRIQVLQEIFSEEI SKVDPGFFLRMKESKYYPEDKRDAEGNCPELPYALFVDDNYTDKNYHKDY PTIYHLRKMLMETTEIPDIRLVYLVLHHMMKHRGHFLLSGDI SQIKEFKSTFEQLIQNIQDEEL EWHI SLDDAAIQFVEHVLKDRNLTRSTKKSRLIKQLNAKSACEKAILNLLSGGTVKLSDIFNNK ELDESERPKVSFADSGYDDYIGIVEAELAEQYYI IASAKAVYDWSVLVEILGNSVS I SEAKIKV YQKHQADLKTLKKIVRQYMTKEDYKRVFVDTEEKLNNYSAYIGMTKKNGKKVDLKSKQCTQADF YDFLKKNVIKVIDHKEITQEIESEIEKENFLPKQVTKDNGVIPYQVHDYELKKILDNLGTRMPF IKENAEKIQQLFEFRIPYYVGPLNRVDDGKDGKFTWSVRKSDARIYPWNFTEVIDVEASAEKFI RRMTNKCTYLVGEDVLPKDSLVYSKFMVLNELNNLRLNGEKI SVELKQRIYEELFCKYRKVTRK KLERYLVIEGIAKKGVEITGIDGDFKASLTAYHDFKERLTDVQLSQRAKEAIVLNVVLFGDDKK LLKQRLSKMYPNLTTGQLKGICSLSYQGWGRLSKTFLEEITVPAPGTGEVWNIMTALWQTNDNL MQLLSRNYGFTNEVEEFNTLKKETDLSYKTVDELYVSPAVKRQIWQTLKVVKEIQKVMGNAPKR VFVEMAREKQEGKRSDSRKKQLVELYRACKNEERDWITELNAQSDQQLRSDKLFLYYIQKGRCM YSGETIQLDELWDNTKYDIDHIYPQSKTMDDSLNNRVLVKKNYNAIKSDTYPLSLDIQKKMMSF WKMLQQQGFITKEKYVRLVRSDELSADELAGFIERQIVETRQSTKAVATILKEALPDTEIVYVK AGNVSNFRQTYELLKVREMNDLHHAKDAYLNIVVGNAYFVKFTKNAAWFIRNNPGRSYNLKRMF EFDIERSGEIAWKAGNKGS IVTVKKVMQKN ILVTRKAYEVKGGLFDQQIMKKGKGQVPIKGND ERLADIEKYGGYNKAAGTYFMLVKSLDKKGKEIRTIEFVPLYLKNQIEINHESAIQYLAQERGL NSPEILLSKIKIDTLFKVDGFKMWLSGRTGNQLIFKGANQLILSHQEAAILKGVVKYVNRKNEN KDAKLSERDGMTEEKLLQLYDTFLDKLSNTVYS IRLSAQIKTLTEKRAKFIGLSNEDQCIVLNE ILHMFQCQSGSANLKLIGGPGSAGILVMNN ITACKQI SVINQSPTGIYEKEIDLIKL
SEQ ID NO: 323
MKKPYS IGLDIGTNSVGWAVVTDDYKVPAKKMKVLGNTDKSHIEKNLLGALLFDSGNTAEDRRL KRTARRRYTRRRNRILYLQEIFSEEMGKVDDSFFHRLEDSFLVTEDKRGERHPIFGNLEEEVKY HENFPTIYHLRQYLADNPEKVDLRLVYLALAHI IKFRGHFLIEGKFDTRNNDVQRLFQEFLAVY DNTFENSSLQEQNVQVEEILTDKI SKSAKKDRVLKLFPNEKSNGRFAEFLKLIVGNQADFKKHF ELEEKAPLQFSKDTYEEELEVLLAQIGDNYAELFLSAKKLYDS ILLSGILTVTDVGTKAPLSAS MIQRYNEHQMDLAQLKQFIRQKLSDKYNEVFSDVSKDGYAGYIDGKTNQEAFYKYLKGLLNKIE GSGYFLDKIEREDFLRKQRTFDNGS IPHQIHLQEMRAI IRRQAEFYPFLADNQDRIEKLLTFRI PYYVGPLARGKSDFAWLSRKSADKITPWNFDEIVDKESSAEAFINRMTNYDLYLPNQKVLPKHS LLYEKFTVYNELTKVKYKTEQGKTAFFDANMKQEIFDGVFKVYRKVTKDKLMDFLEKEFDEFRI VDLTGLDKENKVFNASYGTYHDLCKILDKDFLDNSKNEKILEDIVLTLTLFEDREMIRKRLENY SDLLTKEQVKKLERRHYTGWGRLSAELIHGIRNKESRKTILDYLIDDGNSNRNFMQLINDDALS FKEEIAKAQVIGETDNLNQVVSDIAGSPAIKKGILQSLKIVDELVKIMGHQPENIVVEMARENQ FTNQGRRNSQQRLKGLTDS IKEFGSQILKEHPVENSQLQNDRLFLYYLQNGRDMYTGEELDIDY LSQYDIDHI IPQAFIKDNS IDNRVLTSSKENRGKSDDVPSKDVVRKMKSYWSKLLSAKLITQRK FDNLTKAERGGLTDDDKAGFIKRQLVETRQITKHVARILDERFNTETDENNKKIRQVKIVTLKS NLVSNFRKEFELYKVREINDYHHAHDAYLNAVIGKALLGVYPQLEPEFVYGDYPHFHGHKENKA TAKKFFYS IMNFFKKDDVRTDKNGEI IWKKDEHI S IKKVLSYPQV IVKKVEEQTGGFSKES ILPKGNSDKLIPRKTKKFYWDTKKYGGFDSPIVAYS ILVIADIEKGKSKKLKTVKALVGVTIME KMTFERDPVAFLERKGYRNVQEE I IKLPKYSLFKLENGRKRLLASARELQKGNEIVLPNHLGT LLYHAKNIHKVDEPKHLDYVDKHKDEFKELLDVVSNFSKKYTLAEGNLEKIKELYAQNNGEDLK ELASSFINLLTFTAIGAPATFKFFDKNIDRKRYTSTTEILNATLIHQSITGLYETRIDLNKLGG D
SEQ ID NO: 324
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD SEQ ID NO: 325
MTKPYS IGLDIGTNSVGWAVTTDNYKVPSKKMKVLGNTSKKYIKKNLLGVLLFDSGITAEGRRL KRTARRRYTRRRNRILYLQEIFSTEMATLDDAFFQRLDDSFLVPDDKRDSKYPIFGNLVEEKAY HDEFPTIYHLRKYLADSTKKADLRLVYLALAHMIKYRGHFLIEGEFNSKNNDIQKNFQDFLDTY NAIFESDLSLENSKQLEEIVKDKI SKLEKKDRILKLFPGEKNSGIFSEFLKLIVGNQADFRKCF NLDEKASLHFSKESYDEDLETLLGYIGDDYSDVFLKAKKLYDAILLSGFLTVTDNETEAPLSSA MIKRYNEHKEDLALLKEYIRNI SLKTYNEVFKDDTKNGYAGYIDGKTNQEDFYVYLKKLLAEFE GADYFLEKIDREDFLRKQRTFDNGS IPYQIHLQEMRAILDKQAKFYPFLAKNKERIEKILTFRI PYYVGPLARGNSDFAWS IRKRNEKITPWNFEDVIDKESSAEAFINRMTSFDLYLPEEKVLPKHS LLYETFNVYNELTKVRFIAESMRDYQFLDSKQKKDIVRLYFKDKRKVTDKDI IEYLHAIYGYDG IELKGIEKQFNSSLSTYHDLLNI INDKEFLDDSSNEAI IEEI IHTLTIFEDREMIKQRLSKFEN IFDKSVLKKLSRRHYTGWGKLSAKLINGIRDEKSGNTILDYLIDDGI SNRNFMQLIHDDALSFK KKIQKAQI IGDEDKGNIKEVVKSLPGSPAIKKGILQS IKIVDELVKVMGGRKPES IVVEMAREN QYTNQGKSNSQQRLKRLEKSLKELGSKILKENIPAKLSKIDNNALQNDRLYLYYLQNGKDMYTG DDLDIDRLSNYDIDHI IPQAFLKDNS IDNKVLVSSASNRGKSDDVPSLEVVKKRKTFWYQLLKS KLISQRKFDNLTKAERGGLSPEDKAGFIQRQLVETRQITKHVARLLDEKFNNKKDENNRAVRTV KIITLKSTLVSQFRKDFELYKVREINDFHHAHDAYLNAVVASALLKKYPKLEPEFVYGDYPKYN SFRERKSATEKVYFYS IM IFKKS I SLADGRVIERPLIEVNEETGESVWNKESDLATVRRVLS YPQVNVVKKVEEQNHGLDRGKPKGLFNANLSSKPKPNSNENLVGAKEYLDPKKYGGYAGISNSF TVLVKGTIEKGAKKKITNVLEFQGI S ILDRINYRKDKLNFLLEKGYKDIELI IELPKYSLFELS DGSRRMLAS ILSTNNKRGEIHKGNQIFLSQKFVKLLYHAKRI SNTINENHRKYVENHKKEFEEL FYYILEFNENYVGAKKNGKLLNSAFQSWQNHS IDELCSSFIGPTGSERKGLFELTSRGSAADFE FLGVKIPRYRDYTPSSLLKDATLIHQSVTGLYETRIDLAKLGEG
SEQ ID NO: 326
MKKQKFSDYYLGFDIGTNSVGWCVTDLDYNVLRFNKKDMWGSRLFDEAKTAAERRVQRNSRRRL KRRKWRLNLLEEIFSDEIMKIDSNFFRRLKESSLWLEDKNSKEKFTLFNDDNYKDYDFYKQYPT IFHLRDELIKNPEKKDIRLIYLALHS IFKSRGHFLFEGQNLKEIKNFETLYNNLI SFLEDNGIN KS IDKD IEKLEKI ICDSGKGLKDKEKEFKGIFNSDKQLVAIFKLSVGSSVSLNDLFDTDEYKK EEVEKEKI SFREQIYEDDKPIYYS ILGEKIELLDIAKSFYDFMVLNNILSDSNYI SEAKVKLYE EHKKDLKNLKYI IRKYNKENYDKLFKDKNENNYPAYIGLNKEKDKKEVVEKSRLKIDDLIKVIK GYLPKPERIEEKDKTIFNEILNKIELKTILPKQRI SDNGTLPYQIHEVELEKILENQSKYYDFL NYEENGVSTKDKLLKTFKFRIPYYVGPLNSYHKDKGGNSWIVRKEEGKILPWNFEQKVDIEKSA EEFIKRMTNKCTYLNGEDVIPKDSFLYSEYI ILNELNKVQVNDEFLNEENKRKI IDELFKENKK VSEKKFKEYLLVNQIANRTVELKGIKDSFNSNYVSYIKFKDIFGEKLNLDIYKEI SEKS ILWKC LYGDDKKIFEKKIKNEYGDILNKDEIKKINSFKFNTWGRLSEKLLTGIEFINLETGECYSSVME ALRRTNYNLMELLSSKFTLQES IDNENKEMNEVSYRDLIEESYVSPSLKRAILQTLKIYEEIKK ITGRVPKKVFIEMARGGDESMKNKKIPARQEQLKKLYDSCGNDIANFS IDIKEMKNSLSSYDNN SLRQKKLYLYYLQFGKCMYTGREIDLDRLLQNNDTYDIDHIYPRSKVIKDDSFDNLVLVLKNEN AEKSNEYPVKKEIQEKMKSFWRFLKEKNFI SDEKYKRLTGKDDFELRGFMARQLVNVRQTTKEV GKILQQIEPEIKIVYSKAEIASSFREMFDFIKVRELNDTHHAKDAYLNIVAGNVYNTKFTEKPY RYLQEIKENYDVKKIYNYDIKNAWDKENSLEIVKKNMEKNTV ITRFIKEEKGELFNLNPIKKG ETSNEI I S IKPKLYDGKDNKLNEKYGYYTSLKAAYFIYVEHEKKNKKVKTFERITRIDSTLIKN EKNLIKYLVSQKKLLNPKI IKKIYKEQTLI IDSYPYTFTGVDSNKKVELKNKKQLYLEKKYEQI LKNALKFVEDNQGETEENYKFIYLKKRNNNEKNETIDAVKERY IEFNEMYDKFLEKLSSKDYK NYINNKLYTNFLNSKEKFKKLKLWEKSLILREFLKIFNKNTYGKYEIKDSQTKEKLFSFPEDTG RIRLGQSSLGNNKELLEESVTGLFVKKIKL
SEQ ID NO: 327
MKNYTIGLDIGVASVGWVCIDENYKILNYNNRHAFGVHEFESAESAAGRRLKRGMRRRYNRRKK RLQLLQSLFDSYITDSGFFSKTDSQHFWKNNNEFENRSLTEVLSSLRISSRKYPTIYHLRSDLI ESNKKMDLRLVYLALHNLVKYRGHFLQEGNWSEAASAEGMDDQLLELVTRYAELENLSPLDLSE SQWKAAETLLLNRNLTKTDQSKELTAMFGKEYEPFCKLVAGLGVSLHQLFPSSEQALAYKETKT KVQLSNENVEEVMELLLEEESALLEAVQPFYQQVVLYELLKGETYVAKAKVSAFKQYQKDMASL KNLLDKTFGEKVYRSYFI SDKNSQREYQKSHKVEVLCKLDQFNKEAKFAETFYKDLKKLLEDKS KTS IGTTEKDEMLRI IKAIDSNQFLQKQKGIQNAAIPHQNSLYEAEKILRNQQAHYPFITTEWI EKVKQILAFRIPYYIGPLVKDTTQSPFSWVERKGDAPITPWNFDEQIDKAASAEAFI SRMRKTC TYLKGQEVLPKSSLTYERFEVLNELNGIQLRTTGAESDFRHRLSYEMKCWI IDNVFKQYKTVST KRLLQELKKSPYADELYDEHTGEIKEVFGTQKENAFATSLSGYI SMKS ILGAVVDDNPAMTEEL IYWIAVFEDREILHLKIQEKYPS ITDVQRQKLALVKLPGWGRFSRLLIDGLPLDEQGQSVLDHM EQYSSVFMEVLKNKGFGLEKKIQKMNQHQVDGTKKIRYEDIEELAGSPALKRGIWRSVKIVEEL VSIFGEPANIVLEVAREDGEKKRTKSRKDQWEELTKTTLKNDPDLKSFIGEIKSQGDQRFNEQR FWLYVTQQGKCLYTGKALDIQNLSMYEVDHILPQNFVKDDSLDNLALVMPEANQRKNQVGQNKM PLEI IEANQQYAMRTLWERLHELKLI SSGKLGRLKKPSFDEVDKDKFIARQLVETRQI IKHVRD LLDERFSKSDIHLVKAGIVSKFRRFSEIPKIRDYNNKHHAMDALFAAALIQS ILGKYGKNFLAF DLSKKDRQKQWRSVKGSNKEFFLFKNFGNLRLQSPVTGEEVSGVEYMKHVYFELPWQTTKMTQT GDGMFYKES IFSPKVKQAKYVSPKTEKFVHDEVKNHS ICLVEFTFMKKEKEVQETKFIDLKVIE HHQFLKEPESQLAKFLAEKETNSPI IHARI IRTIPKYQKIWIEHFPYYFI STRELHNARQFEI S YELMEKVKQLSERSSVEELKIVFGLLIDQMNDNYPIYTKSS IQDRVQKFVDTQLYDFKSFEIGF EELKKAVAANAQRSDTFGSRI SKKPKPEEVAIGYES ITGLKYRKPRSVVGTKR
SEQ ID NO: 328
MKKEIKDYFLGLDVGTGSVGWAVTDTDYKLLKANRKDLWGMRCFETAETAEVRRLHRGARRRIE RRKKRIKLLQELFSQEIAKTDEGFFQRMKESPFYAEDKTILQENTLFNDKDFADKTYHKAYPTI NHLIKAWIENKVKPDPRLLYLACH I IKKRGHFLFEGDFDSENQFDTS IQALFEYLREDMEVDI DADSQKVKEILKDSSLKNSEKQSRLNKILGLKPSDKQKKAITNLI SGNKINFADLYDNPDLKDA EKNS I SFSKDDFDALSDDLAS ILGDSFELLLKAKAVYNCSVLSKVIGDEQYLSFAKVKIYEKHK TDLTKLKNVIKKHFPKDYKKVFGYNKNEKNNNNYSGYVGVCKTKSKKLI INNSVNQEDFYKFLK TILSAKSEIKEVNDILTEIETGTFLPKQI SKSNAEIPYQLRKMELEKILSNAEKHFSFLKQKDE KGLSHSEKI IMLLTFKIPYYIGPINDNHKKFFPDRCWVVKKEKSPSGKTTPWNFFDHIDKEKTA EAFITSRTNFCTYLVGESVLPKSSLLYSEYTVLNEINNLQI I IDGK ICDIKLKQKIYEDLFKK YKKITQKQISTFIKHEGICNKTDEVI ILGIDKECTSSLKSYIELK IFGKQVDEISTKNMLEEI IRWATIYDEGEGKTILKTKIKAEYGKYCSDEQIKKILNLKFSGWGRLSRKFLETVTSEMPGFSE PVNI ITAMRETQNNLMELLSSEFTFTENIKKINSGFEDAEKQFSYDGLVKPLFLSPSVKKMLWQ TLKLVKEISHITQAPPKKIFIEMAKGAELEPARTKTRLKILQDLYNNCKNDADAFSSEIKDLSG KIENEDNLRLRSDKLYLYYTQLGKCMYCGKPIEIGHVFDTSNYDIDHIYPQSKIKDDS I SNRVL VCSSCNKNKEDKYPLKSEIQSKQRGFWNFLQRNNFI SLEKLNRLTRATPI SDDETAKFIARQLV ETRQATKVAAKVLEKMFPETKIVYSKAETVSMFRNKFDIVKCREINDFHHAHDAYLNIVVGNVY NTKFTNNPWNFIKEKRDNPKIADTYNYYKVFDYDVKRNNITAWEKGKTI ITVKDMLKRNTPIYT RQAACKKGELFNQTIMKKGLGQHPLKKEGPFS I SKYGGYNKVSAAYYTLIEYEEKGNKIRSLE TIPLYLVKDIQKDQDVLKSYLTDLLGKKEFKILVPKIKINSLLKINGFPCHITGKTNDSFLLRP AVQFCCSNNEVLYFKKI IRFSEIRSQREKIGKTI SPYEDLSFRSYIKENLWKKTKNDEIGEKEF YDLLQKKNLEIYDMLLTKHKDTIYKKRPNSATIDILVKGKEKFKSLI IENQFEVILEILKLFSA TRNVSDLQHIGGSKYSGVAKIGNKI SSLDNCILIYQS ITGIFEKRIDLLKV
SEQ ID NO: 329
MEGQMKNNGNNLQQGNYYLGLDVGTSSVGWAVTDTDYNVLKFRGKSMWGARLFDEASTAEERRT HRGNRRRLARRKYRLLLLEQLFEKEIRKIDDNFFVRLHESNLWADDKSKPSKFLLFNDTNFTDK DYLKKYPTIYHLRSDLIHNSTEHDIRLVFLALHHLIKYRGHFIYDNSANGDVKTLDEAVSDFEE YLNENDIEFNIENKKEFINVLSDKHLTKKEKKI SLKKLYGDITDSENINI SVLIEMLSGSS I SL SNLFKDIEFDGKQNLSLDSDIEETLNDVVDILGDNIDLLIHAKEVYDIAVLTSSLGKHKYLCDA KVELFEKNKKDLMILKKYIKKNHPEDYKKIFSSPTEKKNYAAYSQTNSKNVCSQEEFCLFIKPY IRDMVKSENEDEVRIAKEVEDKSFLTKLKGTNNSVVPYQIHERELNQILKNIVAYLPFMNDEQE DI SVVDKIKLIFKFKIPYYVGPLNTKSTRSWVYRSDEKIYPWNFSNVIDLDKTAHEFMNRLIGR CTYTNDPVLPMDSLLYSKYNVLNEINPIKVNGKAIPVEVKQAIYTDLFENSKKKVTRKS IYIYL LKNGYIEKEDIVSGIDIEIKSKLKSHHDFTQIVQENKCTPEEIERI IKGILVYSDDKSMLRRWL KNNIKGLSENDVKYLAKLNYKEWGRLSKTLLTDIYTINPEDGEACS ILDIMWNTNATLMEILSN EKYQFKQ IENYKAENYDEKQNLHEELDDMYI SPAARRS IWQALRIVDEIVDIKKSAPKKIFIE MAREKKSAMKKKRTESRKDTLLELYKSCKSQADGFYDEELFEKLSNESNSRLRRDQLYLYYTQM GRSMYTGKRIDFDKLINDKNTYDIDHIYPRSKIKDDS ITNRVLVEKDINGEKTDIYPI SEDIRQ KMQPFWKILKEKGLINEEKYKRLTRNYELTDEELSSFVARQLVETQQSTKALATLLKKEYPSAK IVYSKAGNVSEFRNRKDKELPKFREINDLHHAKDAYLNIVVGNVYDTKFTEKFFNNIRNENYSL KRVFDFSVPGAWDAKGSTFNTIKKYMAKNNPI IAFAPYEVKGELFDQQIVPKGKGQFPIKQGKD IEKYGGYNKLSSAFLFAVEYKGKKARERSLETVYIKDVELYLQDPIKYCESVLGLKEPQI IKPK ILMGSLFS INNKKLVVTGRSGKQYVCHHIYQLS INDEDSQYLK IAKYLQEEPDG IERQ ILN ITSVN IKLFDVLCTKFNSNTYEI ILNSLKNDVNEGREKFSELDILEQC ILLQLLKAFKCNRE SSNLEKLNNKKQAGVIVIPHLFTKCSVFKVIHQS ITGLFEKEMDLLK
SEQ ID NO: 330
MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKNRR IKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYHLQEA LLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNNIKLNLD YEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFS IMLLGLKFNEGKLFNHADNAEELKGANQ SHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAYDKFRNELKQV KDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKKQYSLLIKELKKI IPQDSELYFEAENDTLLKVLNTTDNAS IPMQINLYEAETILRNQQKYHAEITDEMIEKVLSLIQ FRIPYYVGPLVNDHTASKFGWMERKSNES IKPWNFDEVVDRSKSATQFIRRMTNKCSYLINEDV LPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEHIFKKYKTVSHSKFLEIML NSNHRENFMNHGEKLS IFGTQDDKKFASKLSSYQDMTKIFGDIEGKRAQIEEI IQWITIFEDKK ILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQGHS I IELLRHSDENFMEILTND VYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWSTIKLVRELTS IFGEPEKI IMEFATE DQQKGKKQKSRKQLWDD IKKNKLKSVDEYKYI IDVANKLNNEQLQQEKLWLYLSQNGKCMYSG QS IDLDALLSPNATKHYEVDHIFPRSFIKDDS IDNKVLVIKKMNQTKGDQVPLQFIQQPYERIA YWKSLNKAGLI SDSKLHKLMKPEFTAMDKEGFIQRQLVETRQI SVHVRDFLKEEYPNTKVIPMK AKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNGVVYHGAQLAYPNVDLFDFNFKWEKVREKWKAL GEFNTKQKSRELFFFKKLEKMEVSQGERLI SKIKLDMNHFKINYSRKLA IPQQFYNQTAVSPK TAELKYESNKSNEVVYKGLTPYQTYVVAIKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELA LYLAQRENKDEVLDAQIVYSLNKGDLLYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNN KETNVEKLLIEYDFIAEKVINEYHHYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKVVTAS ATRSDKIGSRKNSMTHRAFLGKGKDVKIAYTS I SGLKTTKPKSLFKLAESRNEL SEQ ID NO: 331
MAKILGLDLGTNS IGWAVVERENIDFSLIDKGVRIFSEGVKSEKGIESSRAAERTGYRSARKIK YRRKLRKYETLKVLSLNRMCPLS IEEVEEWKKSGFKDYPLNPEFLKWLSTDEESNVNPYFFRDR ASKHKVSLFELGRAFYHIAQRRGFLSNRLDQSAEGILEEHCPKIEAIVEDLI S IDEI STNITDY FFETGILDSNEKNGYAKDLDEGDKKLVSLYKSLLAILKKNESDFENCKSEI IERLNKKDVLGKV KGKIKDI SQAMLDGNYKTLGQYFYSLYSKEKIRNQYTSREEHYLSEFITICKVQGIDQINEEEK INEKKFDGLAKDLYKAIFFQRPLKSQKGLIGKCSFEKSKSRCAI SHPDFEEYRMWTYLNTIKIG TQSDKKLRFLTQDEKLKLVPKFYRKNDFNFDVLAKELIEKGSSFGFYKSSKKNDFFYWFNYKPT DTVAACQVAASLKNAIGEDWKTKSFKYQTINSNKEQVSRTVDYKDLWHLLTVATSDVYLYEFAI DKLGLDEKNAKAFSKTKLKKDFASLSLSAINKILPYLKEGLLYSHAVFVANIENIVDENIWKDE KQRDYIKTQI SEI IENYTLEKSRFEI INGLLKEYKSENEDGKRVYYSKEAEQSFENDLKKKLVL FYKSNEIENKEQQETIFNELLPIFIQQLKDYEFIKIQRLDQKVLIFLKGKNETGQIFCTEEKGT AEEKEKKIKNRLKKLYHPSDIEKFKKKI IKDEFGNEKIVLGSPLTPS IKNPMAMRALHQLRKVL NALILEGQIDEKTI IHIEMARELNDANKRKGIQDYQNDNKKFREDAIKEIKKLYFEDCKKEVEP TEDDILRYQLWMEQNRSEIYEEGKNI S ICDI IGSNPAYDIEHTIPRSRSQDNSQMNKTLCSQRF NREVKKQSMPIELNNHLEILPRIAHWKEEADNLTREIEI I SRS IKAAATKEIKDKKIRRRHYLT LKRDYLQGKYDRFIWEEPKVGFKNSQIPDTGI ITKYAQAYLKSYFKKVESVKGGMVAEFRKIWG IQESFIDENGMKHYKVKDRSKHTHHTIDAITIACMTKEKYDVLAHAWTLEDQQNKKEARS I IEA SKPWKTFKEDLLKIEEEILVSHYTPDNVKKQAKKIVRVRGKKQFVAEVERDVNGKAVPKKAASG KTIYKLDGEGKKLPRLQQGDTIRGSLHQDS IYGAIKNPLNTDEIKYVIRKDLES IKGSDVES IV DEVVKEKIKEAIANKVLLLSSNAQQKNKLVGTVWMNEEKRIAINKVRIYANSVKNPLHIKEHSL LSKSKHVHKQKVYGQNDENYAMAIYELDGKRDFELI IFNLAKLIKQGQGFYPLHKKKEIKGKI VFVPIEKRNKRDVVLKRGQQVVFYDKEVENPKDI SEIVDFKGRIYI IEGLS IQRIVRPSGKVDE YGVIMLRYFKEARKADDIKQDNFKPDGVFKLGENKPTRKMNHQFTAFVEGIDFKVLPSGKFEKI
SEQ ID NO: 332
MEFKKVLGLDIGTNS IGCALLSLPKS IQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLPQV ITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETI STEGKFSFRI S DYVPI SDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWVVYYLRKKALI KPTTKEELIRI IYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYETKFVS ITKV KEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEKGKFKQNKPDL PKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRYKKELEFIWTKQC QLNPELNNL INKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHI I SEDI IYYQRDLKSQKSL I SECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIH IKVIRKESEVNGKKKI IDETQLY INENIKEKLFELFNSKDSLSEKDILELI SLNI INSGIKI SKKEEETTHRINLFANRKELKGNET KSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTEKS ILSSLGWKNRNGKWEKSK NYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLVVMRDGKYWQHPDQIAKDQENTSLMLF DKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIEHNPYKLELVSDQDLEKQVLKSFLE KKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDELGEYIRKKLPNNSLRNPIVEQVIRETI FIVRDVWKSFGI IDEIHIELGRELKNNSEERKKTSESQEKNFQEKERARKLLKELLNSSNFEHY DENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSGLTDEELNKKLKDEKIPTEIEVKKYILWLTQ KCRSPYTGKI IPLSKLFDSNVYEIEHI IPRSKMKNDSTNNLVICELGVNKAKGDRLAANFI SES NGKCKFGEVEYTLLKYGDYLQYCKDTFKYQKAKYKNLLATEPPEDFIERQINDTRYIGRKLAEL LTPVVKDSKNI IFTIGS ITSELKITWGLNGVWKDILRPRFKRLES I INKKLIFQDEDDPNKYHF DLS INPQLDKEGLKRLDHRHHALDATI IAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIR DFKLPWENFTSEVKSKLLSCVVSYKESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAV RRSMFKEPIGTVWIKKIKEVSLKEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQEL GLSSSMRKQDDEKLNKFINEAKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPL NKKEYIEKLSLQKMFNDLPNFILEKS ILDNYPEILKELESDNKYI IEPHKKNNPVNRLLLEHIL EYHNNPKEAFSTEGLEKLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMY ENNQTKDREFLKPNPS I SVLKAIEHKNKIDFFAPNRLGFSRI ILSPGDLVYVPTNDQYVLIKDN SSNETI INWDDNEFI SNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNI SEYSVD DPPIRIKDVCIKIRVDRLGNVRPL
SEQ ID NO: 333
MKHILGLDLGTNS IGWALIERNIEEKYGKI IGMGSRIVPMGAELSKFEQGQAQTKNADRRTNRG ARRLNKRYKQRRNKLIYILQKLDMLPSQIKLKEDFSDPNKIDKITILPI SKKQEQLTAFDLVSL RVKALTEKVGLEDLGKI IYKYNQLRGYAGGSLEPEKEDIFDEEQSKDKKNKSFIAFSKIVFLGE PQEEIFKNKKLNRRAI IVETEEGNFEGSTFLENIKVGDSLELLINISASKSGDTITIKLPNKTN WRKKMENIENQLKEKSKEMGREFYI SEFLLELLKENRWAKIRNNTILRARYESEFEAIWNEQVK HYPFLENLDKKTLIEIVSFIFPGEKESQKKYRELGLEKGLKYI IKNQVVFYQRELKDQSHLI SD CRYEPNEKAIAKSHPVFQEYKVWEQINKLIVNTKIEAGTNRKGEKKYKYIDRPIPTALKEWIFE ELQNKKEITFSAIFKKLKAEFDLREGIDFLNGMSPKDKLKGNETKLQLQKSLGELWDVLGLDSI NRQIELW ILYNEKGNEYDLTSDRTSKVLEFINKYGN IVDDNAEETAIRI SKIKFARAYSSLS LKAVERILPLVRAGKYFNNDFSQQLQSKILKLLNENVEDPFAKAAQTYLDNNQSVLSEGGVGNS IATILVYDKHTAKEYSHDELYKSYKEINLLKQGDLRNPLVEQI INEALVLIRDIWKNYGIKPNE IRVELARDLKNSAKERATIHKRNKDNQTINNKIKETLVKNKKELSLANIEKVKLWEAQRHLSPY TGQPIPLSDLFDKEKYDVDHI IPI SRYFDDSFTNKVI SEKSVNQEKANRTAMEYFEVGSLKYS I FTKEQFIAHVNEYFSGVKRKNLLATS IPEDPVQRQIKDTQYIAIRVKEELNKIVGNENVKTTTG SITDYLRNHWGLTDKFKLLLKERYEALLESEKFLEAEYDNYKKDFDSRKKEYEEKEVLFEEQEL TREEFIKEYKENYIRYKKNKLI IKGWSKRIDHRHHAIDALIVACTEPAHIKRLNDLNKVLQDWL VEHKSEFMPNFEGSNSELLEEILSLPENERTEIFTQIEKFRAIEMPWKGFPEQVEQKLKEI I I S HKPKDKLLLQYNKAGDRQIKLRGQLHEGTLYGI SQGKEAYRIPLTKFGGSKFATEK IQKIVSP FLSGFIANHLKEYNNKKEEAFSAEGIMDLNNKLAQYRNEKGELKPHTPI STVKIYYKDPSKNKK KKDEEDLSLQKLDREKAFNEKLYVKTGDNYLFAVLEGEIKTKKTSQIKRLYDI I SFFDATNFLK EEFRNAPDKKTFDKDLLFRQYFEERNKAKLLFTLKQGDFVYLPNENEEVILDKESPLYNQYWGD LKERGK IYVVQKFSKKQIYFIKHTIADI IKKDVEFGSQNCYETVEGRS IKENCFKLEIDRLGN IVKVIKR SEQ ID NO: 334
MHVEIDFPHFSRGDSHLAMNKNEILRGSSVLYRLGLDLGSNSLGWFVTHLEKRGDRHEPVALGP GGVRIFPDGRDPQSGTSNAVDRRMARGARKRRDRFVERRKELIAALIKYNLLPDDARERRALEV LDPYALRKTALTDTLPAHHVGRALFHLNQRRGFQSNRKTDSKQSEDGAIKQAASRLATDKGNET LGVFFADMHLRKSYEDRQTAIRAELVRLGKDHLTGNARKKIWAKVRKRLFGDEVLPRADAPHGV RARATITGTKASYDYYPTRDMLRDEFNAIWAGQSAHHATITDEARTEIEHI IFYQRPLKPAIVG KCTLDPATRPFKEDPEGYRAPWSHPLAQRFRILSEARNLEIRDTGKGSRRLTKEQSDLVVAALL ANREVKFDKLRTLLKLPAEARFNLESDRRAALDGDQTAARLSDKKGFNKAWRGFPPERQIAIVA RLEETEDENELIAWLEKECALDGAAAARVANTTLPDGHCRLGLRAIKKIVPIMQDGLDEDGVAG AGYHIAAKRAGYDHAKLPTGEQLGRLPYYGQWLQDAVVGSGDARDQKEKQYGQFPNPTVHIGLG QLRRVVNDLIDKYGPPTEI S IEFTRALKLSEQQKAERQREQRRNQDKNKARAEELAKFGRPANP RNLLKMRLWEELAHDPLDRKCVYTGEQI S IERLLSDEVDIDHILPVAMTLDDSPANKI ICMRYA NRHKRKQTPSEAFGSSPTLQGHRYNWDDIAARATGLPRNKRWRFDANAREEFDKRGGFLARQLN ETGWLARLAKQYLGAVTDPNQIWVVPGRLTSMLRGKWGLNGLLPSDNYAGVQDKAEEFLASTDD MEFSGVKNRADHRHHAIDGLVTALTDRSLLWKMANAYDEEHEKFVIEPPWPTMRDDLKAALEKM VVSHKPDHGIEGKLHEDSAYGFVKPLDATGLKEEEAGNLVYRKAIESLNENEVDRIRDIQLRTI VRDHVNVEKTKGVALADALRQLQAPSDDYPQFKHGLRHVRILKKEKGDYLVPIANRASGVAYKA YSAGENFCVEVFETAGGKWDGEAVRRFDANKKNAGPKIAHAPQWRDANEGAKLVMRIHKGDLIR LDHEGRARIMVVHRLDAAAGRFKLADHNETGNLDKRHATNNDIDPFRWLMASYNTLKKLAAVPV RVDELGRVWRVMPN
SEQ ID NO: 335
METTLGIDLGTNS IGLALVDQEEHQILYSGVRIFPEGINKDTIGLGEKEESRNATRRAKRQMRR QYFRKKLRKAKLLELLIAYDMCPLKPEDVRRWKNWDKQQKSTVRQFPDTPAFREWLKQNPYELR KQAVTEDVTRPELGRILYQMIQRRGFLSSRKGKEEGKIFTGKDRMVGIDETRKNLQKQTLGAYL YDIAPKNGEKYRFRTERVRARYTLRDMYIREFEI IWQRQAGHLGLAHEQATRKKNIFLEGSATN VRNSKLITHLQAKYGRGHVLIEDTRITVTFQLPLKEVLGGKIEIEEEQLKFKSNESVLFWQRPL RSQKSLLSKCVFEGRNFYDPVHQKWI IAGPTPAPLSHPEFEEFRAYQFINNI IYGKNEHLTAIQ REAVFELMCTESKDFNFEKIPKHLKLFEKFNFDDTTKVPACTTI SQLRKLFPHPVWEEKREEIW HCFYFYDDNTLLFEKLQKDYALQTNDLEKIKKIRLSESYGNVSLKAIRRINPYLKKGYAYSTAV LLGGIRNSFGKRFEYFKEYEPEIEKAVCRILKEKNAEGEVIRKIKDYLVHNRFGFAKNDRAFQK LYHHSQAITTQAQKERLPETGNLRNPIVQQGLNELRRTVNKLLATCREKYGPSFKFDHIHVEMG RELRSSKTEREKQSRQIRENEKKNEAAKVKLAEYGLKAYRDNIQKYLLYKEIEEKGGTVCCPYT GKTLNI SHTLGSDNSVQIEHI IPYS I SLDDSLANKTLCDATFNREKGELTPYDFYQKDPSPEKW GASSWEEIEDRAFRLLPYAKAQRFIRRKPQESNEFI SRQLNDTRYI SKKAVEYLSAICSDVKAF PGQLTAELRHLWGLNNILQSAPDITFPLPVSATENHREYYVITNEQNEVIRLFPKQGETPRTEK GELLLTGEVERKVFRCKGMQEFQTDVSDGKYWRRIKLSSSVTWSPLFAPKPI SADGQIVLKGRI EKGVFVCNQLKQKLKTGLPDGSYWI SLPVI SQTFKEGESVNNSKLTSQQVQLFGRVREGIFRCH NYQCPASGADGNFWCTLDTDTAQPAFTPIKNAPPGVGGGQI ILTGDVDDKGIFHADDDLHYELP ASLPKGKYYGIFTVESCDPTLIPIELSAPKTSKGENLIEGNIWVDEHTGEVRFDPKKNREDQRH HAIDAIVIALSSQSLFQRLSTYNARRENKKRGLDSTEHFPSPWPGFAQDVRQSVVPLLVSYKQN PKTLCKI SKTLYKDGKKIHSCGNAVRGQLHKETVYGQRTAPGATEKSYHIRKDIRELKTSKHIG KVVDITIRQMLLKHLQENYHIDITQEFNIPSNAFFKEGVYRIFLPNKHGEPVPIKKIRMKEELG NAERLKD INQYVNPRNNHHVMIYQDADGNLKEEIVSFWSVIERQNQGQPIYQLPREGR IVS I LQINDTFLIGLKEEEPEVYRNDLSTLSKHLYRVQKLSGMYYTFRHHLASTLNNEREEFRIQSLE AWKRANPVKVQIDEIGRITFLNGPLC SEQ ID NO: 336
MESSQILSPIGIDLGGKFTGVCLSHLEAFAELPNHANTKYSVILIDHNNFQLSQAQRRATRHRV RNKKRNQFVKRVALQLFQHILSRDLNAKEETALCHYLNNRGYTYVDTDLDEYIKDETTINLLKE LLPSESEHNFIDWFLQKMQSSEFRKILVSKVEEKKDDKELKNAVKNIKNFITGFEKNSVEGHRH RKVYFENIKSDITKDNQLDS IKKKIPSVCLSNLLGHLSNLQWKNLHRYLAKNPKQFDEQTFGNE FLRMLKNFRHLKGSQESLAVRNLIQQLEQSQDYI S ILEKTPPEITIPPYEARTNTGMEKDQSLL LNPEKLNNLYPNWRNLIPGI IDAHPFLEKDLEHTKLRDRKRI I SPSKQDEKRDSYILQRYLDLN KKIDKFKIKKQLSFLGQGKQLPANLIETQKEMETHFNSSLVSVLIQIASAYNKEREDAAQGIWF DNAFSLCELSNINPPRKQKILPLLVGAILSEDFINNKDKWAKFKIFWNTHKIGRTSLKSKCKEI EEARKNSGNAFKIDYEEALNHPEHSNNKALIKI IQTIPDI IQAIQSHLGHNDSQALIYHNPFSL SQLYTILETKRDGFHKNCVAVTCENYWRSQKTEIDPEI SYASRLPADSVRPFDGVLARMMQRLA YEIAMAKWEQIKHIPDNSSLLIPIYLEQNRFEFEESFKKIKGSSSDKTLEQAIEKQNIQWEEKF QRI INASM ICPYKGAS IGGQGEIDHIYPRSLSKKHFGVIFNSEVNLIYCSSQGNREKKEEHYL LEHLSPLYLKHQFGTDNVSDIKNFI SQNVA IKKYI SFHLLTPEQQKAARHALFLDYDDEAFKT ITKFLMSQQKARVNGTQKFLGKQIMEFLSTLADSKQLQLEFS IKQITAEEVHDHRELLSKQEPK LVKSRQQSFPSHAIDATLTMS IGLKEFPQFSQELDNSWFINHLMPDEVHLNPVRSKEKYNKP I SSTPLFKDSLYAERFIPVWVKGETFAIGFSEKDLFEIKPSNKEKLFTLLKTYSTKNPGESLQEL QAKSKAKWLYFPINKTLALEFLHHYFHKEIVTPDDTTVCHFINSLRYYTKKES ITVKILKEPMP VLSVKFESSKKNVLGSFKHTIALPATKDWERLFNHPNFLALKANPAPNPKEFNEFIRKYFLSDN NPNSDIPNNGHNIKPQKHKAVRKVFSLPVIPGNAGTMMRIRRKDNKGQPLYQLQTIDDTPSMGI QINEDRLVKQEVLMDAYKTRNLSTIDGINNSEGQAYATFDNWLTLPVSTFKPEI IKLEMKPHSK TRRYIRITQSLADFIKTIDEALMIKPSDS IDDPLNMPNEIVCKNKLFGNELKPRDGKMKIVSTG KIVTYEFESDSTPQWIQTLYVTQLKKQP
SEQ ID NO: 337
MKKIVGLDLGTNS IGWALINAYINKEHLYGIEACGSRI IPMDAAILGNFDKGNS I SQTADRTSY RGIRRLRERHLLRRERLHRILDLLGFLPKHYSDSLNRYGKFLNDIECKLPWVKDETGSYKFIFQ ESFKEMLANFTEHHPILIANNKKVPYDWTIYYLRKKALTQKI SKEELAWILLNFNQKRGYYQLR GEEEETPNKLVEYYSLKVEKVEDSGERKGKDTWYNVHLENGMIYRRTS IPLDWEGKTKEFIVT TDLEADGSPKKDKEG IKRSFRAPKDDDWTLIKKKTEADIDKIKMTVGAYIYDTLLQKPDQKIR GKLVRTIERKYYKNELYQILKTQSEFHEELRDKQLYIACLNELYPNNEPRRNS I STRDFCHLFI EDI IFYQRPLKSKKSLIDNCPYEENRYIDKESGEIKHAS IKCIAKSHPLYQEFRLWQFIVNLRI YRKETDVDVTQELLPTEADYVTLFEWLNEKKEIDQKAFFKYPPFGFKKTTSNYRWNYVEDKPYP CNETHAQI IARLGKAHIPKAFLSKEKEETLWHILYS IEDKQEIEKALHSFANKNNLSEEFIEQF KNFPPFKKEYGSYSAKAIKKLLPLMRMGKYWS IE IDNGTRIRINKI IDGEYDE IRERVRQKA INLTDITHFRALPLWLACYLVYDRHSEVKDIVKWKTPKDIDLYLKSFKQHSLRNPIVEQVITET LRTVRDIWQQVGHIDEIHIELGREMKNPADKRARMSQQMIKNENTNLRIKALLTEFLNPEFGIE NVRPYSPSQQDLLRIYEEGVLNS ILELPEDIGI ILGKFNQTDTLKRPTRSEILRYKLWLEQKYR SPYTGEMIPLSKLFTPAYEIEHI IPQSRYFDDSLSNKVICESEINKLKDRSLGYEFIKNHHGEK VELAFDKPVEVLSVEAYEKLVHESYSHNRSKMKKLLMEDIPDQFIERQLNDSRYI SKVVKSLLS IVREENEQEAI SKNVIPCTGGITDRLKKDWGINDVWNKIVLPRFIRLNELTESTRFTS INTNN TMIPSMPLELQKGFNKKRIDHRHHAMDAI I IACANR IVNYLNNVSASKNTKITRRDLQTLLCH KDKTDNNGNYKWVIDKPWETFTQDTLTALQKITVSFKQNLRVINKTTNHYQHYENGKKIVSNQS KGDSWAIRKSMHKETVHGEVNLRMIKTVSFNEALKKPQAIVEMDLKKKILAMLELGYDTKRIKN YFEENKDTWQDINPSKIKVYYFTKETKDRYFAVRKPIDTSFDKKKIKES ITDTGIQQIMLRHLE TKDNDPTLAFSPDGIDEMNRNILILNKGKKHQPIYKVRVYEKAEKFTVGQKGNKRTKFVEAAKG TNLFFAIYETEEIDKDTKKVIRKRSYSTIPLNVVIERQKQGLSSAPEDENGNLPKYILSPNDLV YVPTQEEINKGEVVMPIDRDRIYKMVDSSGITANFIPASTANLIFALPKATAEIYCNGENCIQN EYGIGSPQSKNQKAITGEMVKEICFPIKVDRLGNI IQVGSCILTN
SEQ ID NO: 338
MSRSLTFSFDIGYAS IGWAVIASASHDDADPSVCGCGTVLFPKDDCQAFKRREYRRLRR IRSR RVRIERIGRLLVQAQI ITPEMKETSGHPAPFYLASEALKGHRTLAPIELWHVLRWYAHNRGYDN NASWSNSLSEDGGNGEDTERVKHAQDLMDKHGTATMAETICRELKLEEGKADAPMEVSTPAYKN LNTAFPRLIVEKEVRRILELSAPLIPGLTAEI IELIAQHHPLTTEQRGVLLQHGIKLARRYRGS LLFGQLIPRFDNRI I SRCPVTWAQVYEAELKKGNSEQSARERAEKLSKVPTANCPEFYEYRMAR ILC IRADGEPLSAEIRRELMNQARQEGKLTKASLEKAI SSRLGKETETNVSNYFTLHPDSEEA LYLNPAVEVLQRSGIGQILSPSVYRIAANRLRRGKSVTPNYLLNLLKSRGESGEALEKKIEKES KKKEADYADTPLKPKYATGRAPYARTVLKKVVEEILDGEDPTRPARGEAHPDGELKAHDGCLYC LLDTDSSVNQHQKERRLDTMTNNHLVRHRMLILDRLLKDLIQDFADGQKDRI SRVCVEVGKELT TFSAMDSKKIQRELTLRQKSHTDAVNRLKRKLPGKALSANLIRKCRIAMDMNWTCPFTGATYGD HELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGYDFVEQEQENPVPDKPNLHICSL NNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQSQNHEAMKEIGMTEGMMTQSSHLM KLACKS IKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFKELCPEAADPDSGKILKENLRSLTHLH HALDACVLGLIPYI IPAHHNGLLRRVLAMRRIPEKLIPQVRPVANQRHYVLNDDGRMMLRDLSA SLKENIREQLMEQRVIQHVPADMGGALLKETMQRVLSVDGSGEDAMVSLSKKKDGKKEKNQVKA SKLVGVFPEGPSKLKALKAAIEIDGNYGVALDPKPVVIRHIKVFKRIMALKEQNGGKPVRILKK GMLIHLTSSKDPKHAGVWRIES IQDSKGGVKLDLQRAHCAVPKNKTHECNWREVDLI SLLKKYQ MKRYPTSYTGTPR
SEQ ID NO: 339
MTQKVLGLDLGTNS IGSAVRNLDLSDDLQWQLEFFSSDIFRSSVNKESNGREYSLAAQRSAHRR SRGLNEVRRRRLWATLNLLIKHGFCPMSSESLMRWCTYDKRKGLFREYPIDDKDFNAWILLDFN GDGRPDYSSPYQLRRELVTRQFDFEQPIERYKLGRALYHIAQHRGFKSSKGETLSQQETNSKPS STDEIPDVAGAMKASEEKLSKGLSTYMKEHNLLTVGAAFAQLEDEGVRVRNNNDYRAIRSQFQH EIETIFKFQQGLSVESELYERLI SEKKNVGTIFYKRPLRSQRGNVGKCTLERSKPRCAIGHPLF EKFRAWTLINNIKVRMSVDTLDEQLPMKLRLDLYNECFLAFVRTEFKFEDIRKYLEKRLGIHFS YNDKTINYKDSTSVAGCPITARFRKMLGEEWESFRVEGQKERQAHSKNNI SFHRVSYS IEDIWH FCYDAEEPEAVLAFAQETLRLERKKAEELVRIWSAMPQGYAMLSQKAIRNINKILMLGLKYSDA VILAKVPELVDVSDEELLS IAKDYYLVEAQVNYDKRINS IVNGLIAKYKSVSEEYRFADHNYEY LLDESDEKDI IRQIENSLGARRWSLMDANEQTDILQKVRDRYQDFFRSHERKFVESPKLGESFE NYLTKKFPMVEREQWKKLYHPSQITIYRPVSVGKDRSVLRLGNPDIGAIKNPTVLRVLNTLRRR VNQLLDDGVI SPDETRVVVETARELNDANRKWALDTYNRIRHDENEKIKKILEEFYPKRDGI ST DDIDKARYVIDQREVDYFTGSKTYNKDIKKYKFWLEQGGQCMYTGRTINLSNLFDPNAFDIEHT IPESLSFDSSDMNLTLCDAHYNRFIKKNHIPTDMPNYDKAITIDGKEYPAITSQLQRWVERVER LNRNVEYWKGQARRAQNKDRKDQCMREMHLWKMELEYWKKKLERFTVTEVTDGFKNSQLVDTRV ITRHAVLYLKS IFPHVDVQRGDVTAKFRKILGIQSVDEKKDRSLHSHHAIDATTLTI IPVSAKR DRMLELFAKIEEINKMLSFSGSEDRTGLIQELEGLKNKLQMEVKVCRIGHNVSEIGTFINDNII VNHHIKNQALTPVRRRLRKKGYIVGGVDNPRWQTGDALRGEIHKASYYGAITQFAKDDEGKVLM KEGRPQVNPTIKFVIRRELKYKKSAADSGFASWDDLGKAIVDKELFALMKGQFPAETSFKDACE QGIYMIKKGKNGMPDIKLHHIRHVRCEAPQSGLKIKEQTYKSEKEYKRYFYAAVGDLYAMCCYT NGKIREFRIYSLYDVSCHRKSDIEDIPEFITDKKGNRLMLDYKLRTGDMILLYKDNPAELYDLD NVNLSRRLYKINRFESQSNLVLMTHHLSTSKERGRSLGKTVDYQNLPES IRSSVKSLNFLIMGE NRDFVIKNGKI IFNHR
SEQ ID NO: 340
MLVSPI SVDLGGKNTGFFSFTDSLDNSQSGTVIYDESFVLSQVGRRSKRHSKRNNLRNKLVKRL FLLILQEHHGLS IDVLPDEIRGLFNKRGYTYAGFELDEKKKDALESDTLKEFLSEKLQS IDRDS DVEDFLNQIASNAESFKDYKKGFEAVFASATHSPNKKLELKDELKSEYGENAKELLAGLRVTKE ILDEFDKQENQGNLPRAKYFEELGEYIATNEKVKSFFDSNSLKLTDMTKLIG I SNYQLKELRR YFNDKEMEKGDIWIPNKLHKITERFVRSWHPKNDADRQRRAELMKDLKSKEIMELLTTTEPVMT IPPYDDMNNRGAVKCQTLRLNEEYLDKHLPNWRDIAKRLNHGKFNDDLADSTVKGYSEDSTLLH RLLDTSKEIDIYELRGKKPNELLVKTLGQSDANRLYGFAQNYYELIRQKVRAGIWVPVKNKDDS LNLEDNSNMLKRCNHNPPHKKNQIHNLVAGILGVKLDEAKFAEFEKELWSAKVGNKKLSAYCKN IEELRKTHGNTFKIDIEELRKKDPAELSKEEKAKLRLTDDVILNEWSQKIANFFDIDDKHRQRF NNLFSMAQLHTVIDTPRSGFSSTCKRCTAENRFRSETAFYNDETGEFHKKATATCQRLPADTQR PFSGKIERYIDKLGYELAKIKAKELEGMEAKEIKVPI ILEQNAFEYEESLRKSKTGSNDRVINS KKDRDGKKLAKAKENAEDRLKDKDKRIKAFSSGICPYCGDTIGDDGEIDHILPRSHTLKIYGTV FNPEGNLIYVHQKCNQAKADS IYKLSDIKAGVSAQWIEEQVANIKGYKTFSVLSAEQQKAFRYA LFLQNDNEAYKKVVDWLRTDQSARVNGTQKYLAKKIQEKLTKMLPNKHLSFEFILADATEVSEL RRQYARQNPLLAKAEKQAPSSHAIDAVMAFVARYQKVFKDGTPPNADEVAKLAMLDSWNPASNE PLTKGLSTNQKIEKMIKSGDYGQKNMREVFGKS IFGENAIGERYKPIVVQEGGYYIGYPATVKK GYELKNCKVVTSKNDIAKLEKI IKNQDLI SLKENQYIKIFS INKQTI SELSNRYFNMNYKNLVE RDKEIVGLLEFIVENCRYYTKKVDVKFAPKYIHETKYPFYDDWRRFDEAWRYLQENQNKTSSKD RFVIDKSSLNEYYQPDKNEYKLDVDTQPIWDDFCRWYFLDRYKTANDKKS IRIKARKTFSLLAE SGVQGKVFRAKRKIPTGYAYQALPMDNNVIAGDYANILLEANSKTLSLVPKSGI S IEKQLDKKL DVIKKTDVRGLAIDNNSFFNADFDTHGIRLIVENTSVKVGNFPI SAIDKSAKRMIFRALFEKEK GKRKKKTTI SFKESGPVQDYLKVFLKKIVKIQLRTDGS I S IVVRKNAADFTLSFRSEHIQKLL K
SEQ ID NO: 341 MAYRLGLDIGITSVGWAVVALEKDESGLKPVRIQDLGVRIFDKAEDSKTGASLALPRREARSAR RRTRRRRHRLWRVKRLLEQHGILSMEQIEALYAQRTSSPDVYALRVAGLDRCLIAEEIARVLIH IAHRRGFQSNRKSEIKDSDAGKLLKAVQENENLMQSKGYRTVAEMLVSEATKTDAEGKLVHGKK HGYVSNVRNKAGEYRHTVSRQAIVDEVRKIFAAQRALGNDVMSEELEDSYLKILCSQRNFDDGP GGDSPYGHGSVSPDGVRQS IYERMVGSCTFETGEKRAPRSSYSFERFQLLTKVVNLRIYRQQED GGRYPCELTQTERARVIDCAYEQTKITYGKLRKLLDMKDTESFAGLTYGLNRSRNKTEDTVFVE MKFYHEVRKALQRAGVFIQDLS IETLDQIGWILSVWKSDDNRRKKLSTLGLSDNVIEELLPLNG SKFGHLSLKAIRKILPFLEDGYSYDVACELAGYQFQGKTEYVKQRLLPPLGEGEVTNPVVRRAL SQAIKVVNAVIRKHGSPES IHIELARELSKNLDERRKIEKAQKENQKNNEQIKDEIREILGSAH VTGRDIVKYKLFKQQQEFCMYSGEKLDVTRLFEPGYAEVDHI IPYGI SFDDSYDNKVLVKTEQN RQKGNRTPLEYLRDKPEQKAKFIALVES IPLSQKKKNHLLMDKRAIDLEQEGFRERNLSDTRYI TRALMNHIQAWLLFDETASTRSKRVVCVNGAVTAYMRARWGLTKDRDAGDKHHAADAVVVACIG DSLIQRVTKYDKFKRNALADRNRYVQQVSKSEGITQYVDKETGEVFTWESFDERKFLPNEPLEP WPFFRDELLARLSDDPSKNIRAIGLLTYSETEQIDPIFVSRMPTRKVTGAAHKETIRSPRIVKV DDNKGTEIQVVVSKVALTELKLTKDGEIKDYFRPEDDPRLYNTLRERLVQFGGDAKAAFKEPVY KI SKDGSVRTPVRKVKIQEKLTLGVPVHGGRGIAENGGMVRIDVFAKGGKYYFVPIYVADVLKR ELPNRLATAHKPYSEWRVVDDSYQFKFSLYPNDAVMIKPSREVDITYKDRKEPVGCRIMYFVSA NIASAS I SLRTHDNSGELEGLGIQGLEVFEKYVVGPLGDTHPVYKERRMPFRVERKMN SEQ ID NO: 342
MPVLSPLSPNAAQGRRRWSLALDIGEGS IGWAVAEVDAEGRVLQLTGTGVTLFPSAWSNENGTY VAHGAADRAVRGQQQRHDSRRRRLAGLARLCAPVLERSPEDLKDLTRTPPKADPRAIFFLRADA ARRPLDGPELFRVLHHMAAHRGIRLAELQEVDPPPESDADDAAPAATEDEDGTRRAAADERAFR RLMAEHMHRHGTQPTCGEIMAGRLRETPAGAQPVTRARDGLRVGGGVAVPTRALIEQEFDAIRA IQAPRHPDLPWDSLRRLVLDQAPIAVPPATPCLFLEELRRRGETFQGRTITREAIDRGLTVDPL IQALRIRETVGNLRLHERITEPDGRQRYVPRAMPELGLSHGELTAPERDTLVRALMHDPDGLAA KDGRIPYTRLRKLIGYDNSPVCFAQERDTSGGGITVNPTDPLMARWIDGWVDLPLKARSLYVRD VVARGADSAALARLLAEGAHGVPPVAAAAVPAATAAILESDIMQPGRYSVCPWAAEAILDAWAN APTEGFYDVTRGLFGFAPGEIVLEDLRRARGALLAHLPRTMAAARTPNRAAQQRGPLPAYESVI PSQLITSLRRAHKGRAADWSAADPEERNPFLRTWTGNAATDHILNQVRKTANEVITKYGNRRGW DPLPSRITVELAREAKHGVIRRNEIAKENRENEGRRKKESAALDTFCQDNTVSWQAGGLPKERA ALRLRLAQRQEFFCPYCAERPKLRATDLFSPAETEIDHVIERRMGGDGPDNLVLAHKDCNNAKG KKTPHEHAGDLLDSPALAALWQGWRKENADRLKGKGHKARTPREDKDFMDRVGWRFEEDARAKA EENQERRGRRMLHDTARATRLARLYLAAAVMPEDPAEIGAPPVETPPSPEDPTGYTAIYRTI SR VQPVNGSVTHMLRQRLLQRDKNRDYQTHHAEDACLLLLAGPAVVQAFNTEAAQHGADAPDDRPV DLMPTSDAYHQQRRARALGRVPLATVDAALADIVMPESDRQDPETGRVHWRLTRAGRGLKRRID DLTRNCVILSRPRRPSETGTPGALHNATHYGRREITVDGRTDTVVTQRMNARDLVALLDNAKIV PAARLDAAAPGDTILKEICTEIADRHDRVVDPEGTHARRWI SARLAALVPAHAEAVARDIAELA DLDALADADRTPEQEARRSALRQSPYLGRAI SAKKADGRARAREQEILTRALLDPHWGPRGLRH LIMREARAPSLVRIRANKTDAFGRPVPDAAVWVKTDGNAVSQLWRLTSVVTDDGRRIPLPKPIE KRIEI SNLEYARLNGLDEGAGVTGNNAPPRPLRQDIDRLTPLWRDHGTAPGGYLGTAVGELEDK ARSALRGKAMRQTLTDAGITAEAGWRLDSEGAVCDLEVAKGDTVKKDGKTYKVGVITQGIFGMP VDAAGSAPRTPEDCEKFEEQYGIKPWKAKGIPLA SEQ ID NO: 343
MNYTEKEKLFMKYILALDIGIASVGWAILDKESETVIEAGSNIFPEASAADNQLRRDMRGAKRN NRRLKTRINDFIKLWENNNLSIPQFKSTEIVGLKVRAITEEITLDELYLILYSYLKHRGISYLE DALDDTVSGSSAYANGLKLNAKELETHYPCEIQQERLNTIGKYRGQSQI INENGEVLDLSNVFT IGAYRKEIQRVFEIQKKYHPELTDEFCDGYMLIFNRKRKYYEGPGNEKSRTDYGRFTTKLDANG NYITEDNIFEKLIGKCSVYPDELRAAAASYTAQEYNVLNDLNNLTINGRKLEENEKHEIVERIK SSNTINMRKI I SDCMGENIDDFAGARIDKSGKEIFHKFEVYNKMRKALLEIGIDI SNYSREELD EIGYIMTINTDKEAMMEAFQKSWIDLSDDVKQCLINMRKTNGALFNKWQSFSLKIMNELIPEMY AQPKEQMTLLTEMGVTKGTQEEFAGLKYIPVDVVSEDIFNPVVRRSVRI SFKILNAVLKKYKAL DTIVIEMPRDRNSEEQKKRINDSQKLNEKEMEYIEKKLAVTYGIKLSPSDFSSQKQLSLKLKLW NEQDGICLYSGKTIDPNDI INNPQLFEIDHI IPRS I SFDDARSNKVLVYRSENQKKGNQTPYYY LTHSHSEWSFEQYKATVMNLSKKKEYAI SRKKIQNLLYSEDITKMDVLKGFINR INDTSYASR LVLNTIQNFFMANEADTKVKVIKGSYTHQMRCNLKLDKNRDESYSHHAVDAMLIGYSELGYEAY HKLQGEFIDFETGEILRKDMWDENMSDEVYADYLYGKKWANIRNEVVKAEKNVKYWHYVMRKSN RGLCNQTIRGTREYDGKQYKINKLDIRTKEGIKVFAKLAFSKKDSDRERLLVYLNDRRTFDDLC KIYEDYSDAANPFVQYEKETGDI IRKYSKKHNGPRIDKLKYKDGEVGACIDI SHKYGFEKGSKK VILESLVPYRMDVYYKEENHSYYLVGVKQSDIKFEKGRNVIDEEAYARILVNEKMIQPGQSRAD LENLGFKFKLSFYKNDI IEYEKDGKIYTERLVSRTMPKQRNYIETKPIDKAKFEKQNLVGLGKT KFIKKYRYDILGNKYSCSEEKFTSFC
SEQ ID NO: 344
MLRLYCANNLVLNNVQNLWKYLLLLIFDKKI IFLFKIKVILIRRYMENNNKEKIVIGFDLGVAS VGWS IVNAETKEVIDLGVRLFSEPEKADYRRAKRTTRRLLRRKKFKREKFHKLILKNAEIFGLQ SRNEILNVYKDQSSKYRNILKLKINALKEEIKPSELVWILRDYLQNRGYFYKNEKLTDEFVSNS FPSKKLHEHYEKYGFFRGSVKLDNKLDNKKDKAKEKDEEEESDAKKESEELIFSNKQWINEIVK VFENQSYLTESFKEEYLKLFNYVRPFNKGPGSKNSRTAYGVFSTDIDPETNKFKDYSNIWDKTI GKCSLFEEEIRAPKNLPSALIFNLQNEICTIKNEFTEFKNWWLNAEQKSEILKFVFTELFNWKD KKYSDKKFNKNLQDKIKKYLLNFALENFNLNEEILKNRDLENDTVLGLKGVKYYEKSNATADAA LEFSSLKPLYVFIKFLKEKKLDLNYLLGLENTEILYFLDS IYLAI SYSSDLKERNEWFKKLLKE LYPKIKNNNLEI IENVEDIFEITDQEKFESFSKTHSLSREAFNHI IPLLLSNNEGKNYESLKHS NEELKKRTEKAELKAQQNQKYLKDNFLKEALVPLSVKTSVLQAIKIFNQI IKNFGKKYEI SQVV IEMARELTKPNLEKLLNNATNSNIKILKEKLDQTEKFDDFTKKKFIDKIENSVVFRNKLFLWFE QDRKDPYTQLDIKINEIEDETEIDHVIPYSKSADDSWFNKLLVKKSTNQLKKNKTVWEYYQNES DPEAKWNKFVAWAKRIYLVQKSDKESKDNSEKNS IFKNKKPNLKFK ITKKLFDPYKDLGFLAR NLNDTRYATKVFRDQLNNYSKHHSKDDENKLFKVVCMNGS ITSFLRKSMWRKNEEQVYRFNFWK KDRDQFFHHAVDAS I IAIFSLLTKTLYNKLRVYESYDVQRREDGVYLINKETGEVKKADKDYWK DQHNFLKIRENAIEIKNVLNNVDFQNQVRYSRKANTKLNTQLFNETLYGVKEFENNFYKLEKVN LFSRKDLRKFILEDLNEESEKNKKNENGSRKRILTEKYIVDEILQILENEEFKDSKSDINALNK YMDSLPSKFSEFFSQDFINKCKKENSLILTFDAIKHNDPKKVIKIKNLKFFREDATLKNKQAVH KDSKNQIKSFYESYKCVGFIWLKNKNDLEES IFVPINSRVIHFGDKDKDIFDFDSYNKEKLLNE INLKRPENKKFNS INEIEFVKFVKPGALLLNFENQQIYYI STLESSSLRAKIKLLNKMDKGKAV SMKKITNPDEYKI IEHVNPLGINLNWTKKLENNN
SEQ ID NO: 345
MLMSKHVLGLDLGVGS IGWCLIALDAQGDPAEILGMGSRVVPLNNATKAIEAFNAGAAFTASQE RTARRTMRRGFARYQLRRYRLRRELEKVGMLPDAALIQLPLLELWELRERAATAGRRLTLPELG RVLCHINQKRGYRHVKSDAAAIVGDEGEKKKDSNSAYLAGIRANDEKLQAEHKTVGQYFAEQLR QNQSESPTGGI SYRIKDQIFSRQCYIDEYDQIMAVQRVHYPDILTDEFIRMLRDEVIFMQRPLK SCKHLVSLCEFEKQERVMRVQQDDGKGGWQLVERRVKFGPKVAPKSSPLFQLCCIYEAVNNIRL TRPNGSPCDITPEERAKIVAHLQSSASLSFAALKKLLKEKALIADQLTSKSGLKGNSTRVALAS ALQPYPQYHHLLDMELETRMMTVQLTDEETGEVTEREVAVVTDSYVRKPLYRLWHILYS IEERE AMRRALITQLGMKEEDLDGGLLDQLYRLDFVKPGYGNKSAKFICKLLPQLQQGLGYSEACAAVG YRHSNSPTSEEITERTLLEKIPLLQRNELRQPLVEKILNQMINLVNALKAEYGIDEVRVELARE LKMSREERERMARNNKDREERNKGVAAKIRECGLYPTKPRIQKYMLWKEAGRQCLYCGRS IEEE QCLREGGMEVEHI IPKSVLYDDSYGNKTCACRRCNKEKGNRTALEYIRAKGREAEYMKRINDLL KEKKI SYSKHQRLRWLKEDIPSDFLERQLRLTQYI SRQAMAILQQGIRRVSASEGGVTARLRSL WGYGKILHTLNLDRYDSMGETERVSREGEATEELHITNWSKRMDHRHHAIDALVVACTRQSYIQ RLNRLSSEFGREDKKKEDQEAQEQQATETGRLSNLERWLTQRPHFSVRTVSDKVAEILI SYRPG QRVVTRGRNIYRKKMADGREVSCVQRGVLVPRGELMEASFYGKILSQGRVRIVKRYPLHDLKGE VVDPHLRELITTYNQELKSREKGAPIPPLCLDKDKKQEVRSVRCYAKTLSLDKAIPMCFDEKGE PTAFVKSASNHHLALYRTPKGKLVES IVTFWDAVDRARYGIPLVITHPREVMEQVLQRGDIPEQ VLSLLPPSDWVFVDSLQQDEMVVIGLSDEELQRALEAQNYRKI SEHLYRVQKMSSSYYVFRYHL ETSVADDKNTSGRIPKFHRVQSLKAYEERNIRKVRVDLLGRI SLL SEQ ID NO: 346
MSDLVLGLDIGIGSVGVGILNKVTGEI IHKNSRIFPAAQAENNLVRRTNRQGRRLARRKKHRRV RLNRLFEESGLITDFTKI S INLNPYQLRVKGLTDELSNEELFIALKNMVKHRGI SYLDDASDDG NSSVGDYAQIVKENSKQLETKTPGQIQLERYQTYGQLRGDFTVEKDGKKHRLINVFPTSAYRSE ALRILQTQQEFNPQITDEFINRYLEILTGKRKYYHGPGNEKSRTDYGRYRTSGETLDNIFGILI GKCTFYPDEFRAAKASYTAQEFNLLNDLNNLTVPTETKKLSKEQKNQI INYVKNEKAMGPAKLF KYIAKLLSCDVADIKGYRIDKSGKAEIHTFEAYRKMKTLETLDIEQMDRETLDKLAYVLTLNTE REGIQEALEHEFADGSFSQKQVDELVQFRKANSS IFGKGWHNFSVKLMMELIPELYETSEEQMT ILTRLGKQKTTSSSNKTKYIDEKLLTEEIYNPVVAKSVRQAIKIVNAAIKEYGDFDNIVIEMAR ETNEDDEKKAIQKIQKANKDEKDAAMLKAANQYNGKAELPHSVFHGHKQLATKIRLWHQQGERC LYTGKTI S IHDLINNSNQFEVDHILPLS ITFDDSLANKVLVYATANQEKGQRTPYQALDSMDDA WSFRELKAFVRESKTLSNKKKEYLLTEEDI SKFDVRKKFIERNLVDTRYASRVVLNALQEHFRA HKIDTKVSVVRGQFTSQLRRHWGIEKTRDTYHHHAVDALI IAASSQLNLWKKQKNTLVSYSEDQ LLDIETGELI SDDEYKESVFKAPYQHFVDTLKSKEFEDS ILFSYQVDSKFNRKI SDATIYATRQ AKVGKDKADETYVLGKIKDIYTQDGYDAFMKIYKKDKSKFLMYRHDPQTFEKVIEPILENYPNK QINEKGKEVPCNPFLKYKEEHGYIRKYSKKGNGPEIKSLKYYDSKLGNHIDITPKDSNNKVVLQ SVSPWRADVYFNKTTGKYEILGLKYADLQFEKGTGTYKI SQEKYNDIKKKEGVDSDSEFKFTLY KNDLLLVKDTETKEQQLFRFLSRTMPKQKHYVELKPYDKQKFEGGEALIKVLGNVANSGQCKKG LGKSNI S IYKVRTDVLGNQHI IKNEGDKPKLDF SEQ ID NO: 347
MNAEHGKEGLLIMEENFQYRIGLDIGITSVGWAVLQNNSQDEPVRITDLGVRIFDVAENPKNGD ALAAPRRDARTTRRRLRRRRHRLERIKFLLQENGLIEMDSFMERYYKGNLPDVYQLRYEGLDRK LKDEELAQVLIHIAKHRGFRSTRKAETKEKEGGAVLKATTENQKIMQEKGYRTVGEMLYLDEAF HTECLWNEKGYVLTPRNRPDDYKHTILRSMLVEEVHAIFAAQRAHGNQKATEGLEEAYVEIMTS QRSFDMGPGLQPDGKPSPYAMEGFGDRVGKCTFEKDEYRAPKATYTAELFVALQKINHTKLIDE FGTGRFFSEEERKTI IGLLLSSKELKYGTIRKKLNIDPSLKFNSLNYSAKKEGETEEERVLDTE KAKFASMFWTYEYSKCLKDRTEEMPVGEKADLFDRIGEILTAYKNDDSRSSRLKELGLSGEEID GLLDLSPAKYQRVSLKAMRKMQPYLEDGLIYDKACEAAGYDFRALNDGNKKHLLKGEEINAIVN DITNPVVKRSVSQTIKVINAI IQKYGSPQAVNIELAREMSKNFQDRTNLEKEMKKRQQENERAK QQI IELGKQNPTGQDILKYRLWNDQGGYCLYSGKKIPLEELFDGGYDIDHILPYS ITFDDSYRN KVLVTAQENRQKGNRTPYEYFGADEKRWEDYEASVRLLVRDYKKQQKLLKKNFTEEERKEFKER NLNDTKYITRVVYNMIRQNLELEPFNHPEKKKQVWAVNGAVTSYLRKRWGLMQKDRSTDRHHAM DAVVIACCTDGMIHKI SRYMQGRELAYSRNFKFPDEETGEILNRDNFTREQWDEKFGVKVPLPW NSFRDELDIRLLNEDPKNFLLTHADVQRELDYPGWMYGEEESPIEEGRYINYIRPLFVSRMPNH KVTGSAHDATIRSARDYETRGVVITKVPLTDLKLNKDNEIEGYYDKDSDRLLYQALVRQLLLHG NDGKKAFAEDFHKPKADGTEGPVVRKVKIEKKQTSGVMVRGGTGIAANGEMVRIDVFRENGKYY FVPVYTADVVRKVLPNRAATHTKPYSEWRVMDDANFVFSLYSRDLIHVKSKKDIKTNLVNGGLL LQKEIFAYYTGADIATAS IAGFANDSNFKFRGLGIQSLEIFEKCQVDILGNI SVVRHENRQEFH
SEQ ID NO: 348
MRVLGLDAGIASLGWALIEIEESNRGELSQGTI IGAGTWMFDAPEEKTQAGAKLKSEQRRTFRG QRRVVRRRRQRMNEVRRILHSHGLLPSSDRDALKQPGLDPWRIRAEALDRLLGPVELAVALGHI ARHRGFKSNSKGAKTNDPADDTSKMKRAVNETREKLARFGSAAKMLVEDESFVLRQTPTKNGAS EIVRRFRNREGDYSRSLLRDDLAAEMRALFTAQARFQSAIATADLQTAFTKAAFFQRPLQDSEK LVGPCPFEVDEKRAPKRGYSFELFRFLSRLNHVTLRDGKQERTLTRDELALAAADFGAAAKVSF TALRKKLKLPETTVFVGVKADEESKLDVVARSGKAAEGTARLRSVIVDALGELAWGALLCSPEK LDKIAEVI SFRSDIGRI SEGLAQAGCNAPLVDALTAAASDGRFDPFTGAGHI SSKAARNILSGL RQGMTYDKACCAADYDHTASRERGAFDVGGHGREALKRILQEERI SRELVGSPTARKALIES IK QVKAIVERYGVPDRIHVELARDVGKS IEEREEITRGIEKRNRQKDKLRGLFEKEVGRPPQDGAR GKEELLRFELWSEQMGRCLYTDDYI SPSQLVATDDAVQVDHILPWSRFADDSYANKTLCMAKAN QDKKGRTPYEWFKAEKTDTEWDAFIVRVEALADMKGFKKRNYKLRNAEEAAAKFRNRNLNDTRW ACRLLAEALKQLYPKGEKDKDGKERRRVFSRPGALTDRLRRAWGLQWMKKSTKGDRIPDDRHHA LDAIVIAATTESLLQRATREVQEIEDKGLHYDLVKNVTPPWPGFREQAVEAVEKVFVARAERRR ARGKAHDATIRHIAVREGEQRVYERRKVAELKLADLDRVKDAERNARLIEKLRNWIEAGSPKDD PPLSPKGDPIFKVRLVTKSKVNIALDTGNPKRPGTVDRGEMARVDVFRKASKKGKYEYYLVPIY PHDIATMKTPPIRAVQAYKPEDEWPEMDSSYEFCWSLVPMTYLQVI SSKGEIFEGYYRGMNRSV GAIQLSAHSNSSDVVQGIGARTLTEFKKFNVDRFGRKHEVERELRTWRGETWRGKAYI
SEQ ID NO: 349
MGNYYLGLDVGIGS IGWAVINIEKKRIEDFNVRIFKSGEIQEKNRNSRASQQCRRSRGLRRLYR RKSHRKLRLKNYLS I IGLTTSEKIDYYYETADNNVIQLRNKGLSEKLTPEEIAACLIHICNNRG YKDFYEVNVEDIEDPDERNEYKEEHDS IVLI SNLMNEGGYCTPAEMICNCREFDEPNSVYRKFH NSAASKNHYLITRHMLVKEVDLILENQSKYYGILDDKTIAKIKDI IFAQRDFEIGPGKNERFRR FTGYLDS IGKCQFFKDQERGSRFTVIADIYAFVNVLSQYTYTNNRGESVFDTSFANDLINSALK NGSMDKRELKAIAKSYHIDI SDKNSDTSLTKCFKYIKVVKPLFEKYGYDWDKLIENYTDTDNNV LNRIGIVLSQAQTPKRRREKLKALNIGLDDGLINELTKLKLSGTANVSYKYMQGS IEAFCEGDL YGKYQAKFNKEIPDIDENAKPQKLPPFKNEDDCEFFKNPVVFRS INETRKLINAI IDKYGYPAA VNIETADELNKTFEDRAIDTKRNNDNQKENDRIVKEI IECIKCDEVHARHLIEKYKLWEAQEGK CLYSGETITKEDMLRDKDKLFEVDHIVPYSLILDNTINNKALVYAEENQKKGQRTPLMYMNEAQ AADYRVRVNTMFKSKKCSKKKYQYLMLPDLNDQELLGGWRSRNLNDTRYICKYLVNYLRKNLRF DRSYESSDEDDLKIRDHYRVFPVKSRFTSMFRRWWLNEKTWGRYDKAELKKLTYLDHAADAI I I ANCRPEYVVLAGEKLKLNKMYHQAGKRITPEYEQSKKACIDNLYKLFRMDRRTAEKLLSGHGRL TPI IPNLSEEVDKRLWDKNIYEQFWKDDKDKKSCEELYRENVASLYKGDPKFASSLSMPVI SLK PDHKYRGTITGEEAIRVKEIDGKLIKLKRKSISEITAESINSIYTDDKILIDSLKTIFEQADYK DVGDYLKKTNQHFFTTSSGKRVNKVTVIEKVPSRWLRKEIDDNNFSLLNDSSYYCIELYKDSKG DNNLQGIAMSDIVHDRKTKKLYLKPDFNYPDDYYTHVMYIFPGDYLRIKSTSKKSGEQLKFEGY FI SVKNVNENSFRFI SDNKPCAKDKRVS ITKKDIVIKLAVDLMGKVQGENNGKGI SCGEPLSLL KEKN SEQ ID NO: 350
MLSRQLLGASHLARPVSYSYNVQDNDVHCSYGERCFMRGKRYRIGIDVGLNSVGLAAVEVSDEN SPVRLLNAQSVIHDGGVDPQKNKEAITRKNMSGVARRTRRMRRRKRERLHKLDMLLGKFGYPVI EPESLDKPFEEWHVRAELATRYIEDDELRRES I S IALRHMARHRGWRNPYRQVDSLI SDNPYSK QYGELKEKAKAYNDDATAAEEESTPAQLVVAMLDAGYAEAPRLRWRTGSKKPDAEGYLPVRLMQ EDNANELKQIFRVQRVPADEWKPLFRSVFYAVSPKGSAEQRVGQDPLAPEQARALKASLAFQEY RIANVITNLRIKDASAELRKLTVDEKQS IYDQLVSPSSEDITWSDLCDFLGFKRSQLKGVGSLT EDGEERI SSRPPRLTSVQRIYESDNKIRKPLVAWWKSASDNEHEAMIRLLSNTVDIDKVREDVA YASAIEFIDGLDDDALTKLDSVDLPSGRAAYSVETLQKLTRQMLTTDDDLHEARKTLFNVTDSW RPPADPIGEPLGNPSVDRVLKNVNRYLMNCQQRWGNPVSVNIEHVRSSFSSVAFARKDKREYEK NNEKRS IFRSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHIVPRK GVGSTNTRTNFAAVCAECNRMKSNTPFAIWARSEDAQTRGVSLAEAKKRVTMFTFNPKSYAPRE VKAFKQAVIARLQQTEDDAAIDNRS IESVAWMADELHRRIDWYFNAKQYVNSAS IDDAEAETMK TTVSVFQGRVTASARRAAGIEGKIHFIGQQSKTRLDRRHHAVDASVIAMMNTAAAQTLMERESL RESQRLIGLMPGERSWKEYPYEGTSRYESFHLWLDNMDVLLELLNDALDNDRIAVMQSQRYVLG NSIAHDATIHPLEKVPLGSAMSADLIRRASTPALWCALTRLPDYDEKEGLPEDSHREIRVHDTR YSADDEMGFFASQAAQIAVQEGSADIGSAIHHARVYRCWKTNAKGVRKYFYGMIRVFQTDLLRA CHDDLFTVPLPPQS I SMRYGEPRVVQALQSGNAQYLGSLVVGDEIEMDFSSLDVDGQIGEYLQF FSQFSGGNLAWKHWVVDGFFNQTQLRIRPRYLAAEGLAKAFSDDVVPDGVQKIVTKQGWLPPVN TASKTAVRIVRRNAFGEPRLSSAHHMPCSWQWRHE
SEQ ID NO: 351
MYS IGLDLGI SSVGWSVIDERTGNVIDLGVRLFSAKNSEKNLERRTNRGGRRLIRRKTNRLKDA KKILAAVGFYEDKSLKNSCPYQLRVKGLTEPLSRGEIYKVTLHILKKRGI SYLDEVDTEAAKES QDYKEQVRKNAQLLTKYTPGQIQLQRLKENNRVKTGINAQGNYQLNVFKVSAYANELATILKTQ QAFYPNELTDDWIALFVQPGIAEEAGLIYRKRPYYHGPGNEANNSPYGRWSDFQKTGEPATNIF DKLIGKDFQGELRASGLSLSAQQYNLLNDLTNLKIDGEVPLSSEQKEYILTELMTKEFTRFGVN DVVKLLGVKKERLSGWRLDKKGKPEIHTLKGYRNWRKIFAEAGIDLATLPTETIDCLAKVLTLN TEREGIENTLAFELPELSESVKLLVLDRYKELSQS I STQSWHRFSLKTLHLLIPELMNATSEQN TLLEQFQLKSDVRKRYSEYKKLPTKDVLAEIYNPTVNKTVSQAFKVIDALLVKYGKEQIRYITI EMPRDDNEEDEKKRIKELHAKNSQRKNDSQSYFMQKSGWSQEKFQTTIQKNRRFLAKLLYYYEQ DGICAYTGLPI SPELLVSDSTEIDHI IPI S I SLDDS INNKVLVLSKANQVKGQQTPYDAWMDGS FKKINGKFSNWDDYQKWVESRHFSHKKENNLLETRNIFDSEQVEKFLARNLNDTRYASRLVLNT LQSFFTNQETKVRVVNGSFTHTLRKKWGADLDKTRETHHHHAVDATLCAVTSFVKVSRYHYAVK EETGEKVMREIDFETGEIVNEMSYWEFKKSKKYERKTYQVKWPNFREQLKPVNLHPRIKFSHQV DRKANRKLSDATIYSVREKTEVKTLKSGKQKITTDEYTIGKIKDIYTLDGWEAFKKKQDKLLMK DLDEKTYERLLS IAETTPDFQEVEEKNGKVKRVKRSPFAVYCEENDIPAIQKYAKKNNGPLIRS LKYYDGKLNKHINITKDSQGRPVEKTKNGRKVTLQSLKPYRYDIYQDLETKAYYTVQLYYSDLR FVEGKYGITEKEYMKKVAEQTKGQVVRFCFSLQKNDGLEIEWKDSQRYDVRFYNFQSANS INFK GLEQEMMPAENQFKQKPYNNGAINLNIAKYGKEGKKLRKFNTDILGKKHYLFYEKEPKNI IK
SEQ ID NO: 352
MYFYKNKENKLNKKVVLGLDLGIASVGWCLTDI SQKEDNKFPI ILHGVRLFETVDDSDDKLLNE TRRKKRGQRRRNRRLFTRKRDFIKYLIDNNI IELEFDKNPKILVRNFIEKYINPFSKNLELKYK SVTNLPIGFHNLRKAAINEKYKLDKSELIVLLYFYLSLRGAFFDNPEDTKSKEMNKNEIEIFDK NES IKNAEFPIDKI IEFYKI SGKIRSTINLKFGHQDYLKEIKQVFEKQNIDFMNYEKFAMEEKS FFSRIRNYSEGPGNEKSFSKYGLYANENGNPELI INEKGQKIYTKIFKTLWESKIGKCSYDKKL YRAPKNSFSAKVFDITNKLTDWKHKNEYI SERLKRKILLSRFLNKDSKSAVEKILKEE IKFEN LSEIAYNKDDNKINLPI INAYHSLTTIFKKHLINFENYLI SNENDLSKLMSFYKQQSEKLFVPN EKGSYEINQNNNVLHIFDAISNILNKFSTIQDRIRILEGYFEFSNLKKDVKSSEIYSEIAKLRE FSGTSSLSFGAYYKFIPNLISEGSKNYSTISYEEKALQNQKNNFSHSNLFEKTWVEDLIASPTV KRSLRQTMNLLKEIFKYSEKNNLEIEKIVVEVTRSSNNKHERKKIEGINKYRKEKYEELKKVYD LPNENTTLLKKLWLLRQQQGYDAYSLRKIEANDVINKPWNYDIDHIVPRS I SFDDSFSNLVIVN KLDNAKKSNDLSAKQFIEKIYGIEKLKEAKENWGNWYLRNANGKAFNDKGKFIKLYTIDNLDEF DNSDFINRNLSDTSYITNALVNHLTFSNSKYKYSVVSVNGKQTSNLRNQIAFVGIKNNKETERE WKRPEGFKSINSNDFLIREEGKNDVKDDVLIKDRSFNGHHAEDAYFITI ISQYFRSFKRIERLN VNYRKETRELDDLEKNNIKFKEKASFDNFLLINALDELNEKLNQMRFSRMVITKKNTQLFNETL YSGKYDKGKNTIKKVEKLNLLDNRTDKIKKIEEFFDEDKLKENELTKLHIFNHDKNLYETLKII WNEVKIEIKNKNLNEKNYFKYFVNKKLQEGKI SFNEWVPILDNDFKI IRKIRYIKFSSEEKETD EI IFSQSNFLKIDQRQNFSFHNTLYWVQIWVYKNQKDQYCFI S IDARNSKFEKDEIKINYEKLK TQKEKLQI INEEPILKINKGDLFENEEKELFYIVGRDEKPQKLEIKYILGKKIKDQKQIQKPVK KYFPNWKKVNLTYMGEIFKK
SEQ ID NO: 353
MDNKNYRIGIDVGLNS IGFCAVEVDQHDTPLGFLNLSVYRHDAGIDPNGKKTNTTRLAMSGVAR RTRRLFRKRKRRLAALDRFIEAQGWTLPDHADYKDPYTPWLVRAELAQTPIRDENDLHEKLAIA VRHIARHRGWRSPWVPVRSLHVEQPPSDQYLALKERVEAKTLLQMPEGATPAEMVVALDLSVDV NLRPKNREKTDTRPENKKPGFLGGKLMQSDNANELRKIAKIQGLDDALLRELIELVFAADSPKG ASGELVGYDVLPGQHGKRRAEKAHPAFQRYRIAS IVSNLRIRHLGSGADERLDVETQKRVFEYL LNAKPTADITWSDVAEEIGVERNLLMGTATQTADGERASAKPPVDVTNVAFATCKIKPLKEWWL NADYEARCVMVSALSHAEKLTEGTAAEVEVAEFLQNLSDEDNEKLDSFSLPIGRAAYSVDSLER LTKRMIENGEDLFEARVNEFGVSEDWRPPAEPIGARVGNPAVDRVLKAVNRYLMAAEAEWGAPL SV IEHVREGFI SKRQAVEIDRENQKRYQRNQAVRSQIADHINATSGVRGSDVTRYLAIQRQNG ECLYCGTAITFVNSEMDHIVPRAGLGSTNTRDNLVATCERCNKSKSNKPFAVWAAECGIPGVSV AEALKRVDFWIADGFASSKEHRELQKGVKDRLKRKVSDPEIDNRSMESVAWMARELAHRVQYYF DEKHTGTKVRVFRGSLTSAARKASGFESRVNFIGGNGKTRLDRRHHAMDAATVAMLRNSVAKTL VLRGNIRASERAIGAAETWKSFRGENVADRQIFESWSENMRVLVEKFNLALYNDEVS IFSSLRL QLGNGKAHDDTITKLQMHKVGDAWSLTEIDRASTPALWCALTRQPDFTWKDGLPANEDRTIIVN GTHYGPLDKVGIFGKAAASLLVRGGSVDIGSAIHHARIYRIAGKKPTYGMVRVFAPDLLRYRNE DLFNVELPPQSVSMRYAEPKVREAIREGKAEYLGWLVVGDELLLDLSSETSGQIAELQQDFPGT THWTVAGFFSPSRLRLRPVYLAQEGLGEDVSEGSKS I IAGQGWRPAVNKVFGSAMPEVIRRDGL GRKRRFSYSGLPVSWQG
SEQ ID NO: 354
MRLGLDIGTSS IGWWLYETDGAGSDARITGVVDGGVRIFSDGRDPKSGASLAVDRRAARAMRRR RDRYLRRRATLMKVLAETGLMPADPAEAKALEALDPFALRAAGLDEPLPLPHLGRALFHLNQRR GFKSNRKTDRGDNESGKIKDATARLDMEMMANGARTYGEFLHKRRQKATDPRHVPSVRTRLSIA NRGGPDGKEEAGYDFYPDRRHLEEEFHKLWAAQGAHHPELTETLRDLLFEKIFFQRPLKEPEVG LCLFSGHHGVPPKDPRLPKAHPLTQRRVLYETVNQLRVTADGREARPLTREERDQVIHALDNKK PTKSLSSMVLKLPALAKVLKLRDGERFTLETGVRDAIACDPLRASPAHPDRFGPRWS ILDADAQ WEVI SRIRRVQSDAEHAALVDWLTEAHGLDRAHAEATAHAPLPDGYGRLGLTATTRILYQLTAD VVTYADAVKACGWHHSDGRTGECFDRLPYYGEVLERHVIPGSYHPDDDDITRFGRITNPTVHIG LNQLRRLVNRI IETHGKPHQIVVELARDLKKSEEQKRADIKRIRDTTEAAKKRSEKLEELEIED NGRNRMLLRLWEDLNPDDAMRRFCPYTGTRI SAAMIFDGSCDVDHILPYSRTLDDSFPNRTLCL REANRQKRNQTPWQAWGDTPHWHAIAANLKNLPENKRWRFAPDAMTRFEGENGFLDRALKDTQY LARI SRSYLDTLFTKGGHVWVVPGRFTEMLRRHWGLNSLLSDAGRGAVKAKNRTDHRHHAIDAA VIAATDPGLLNRI SRAAGQGEAAGQSAEL IARDTPPPWEGFRDDLRVRLDRI IVSHRADHGRID HAARKQGRDSTAGQLHQETAYS IVDDIHVASRTDLLSLKPAQLLDEPGRSGQVRDPQLRKALRV ATGGKTGKDFENALRYFASKPGPYQAIRRVRI IKPLQAQARVPVPAQDPIKAYQGGSNHLFEIW RLPDGEIEAQVITSFEAHTLEGEKRPHPAAKRLLRVHKGDMVALERDGRRVVGHVQKMDIANGL FIVPHNEANADTRNNDKSDPFKWIQIGARPAIASGIRRVSVDEIGRLRDGGTRPI
SEQ ID NO: 355
MLHCIAVIRVPPSEEPGFFETHADSCALCHHGCMTYAANDKAIRYRVGIDVGLRS IGFCAVEVD DEDHPIRILNSVVHVHDAGTGGPGETESLRKRSGVAARARRRGRAEKQRLKKLDVLLEELGWGV SSNELLDSHAPWHIRKRLVSEYIEDETERRQCLSVAMAHIARHRGWRNSFSKVDTLLLEQAPSD RMQGLKERVEDRTGLQFSEEVTQGELVATLLEHDGDVTIRGFVRKGGKATKVHGVLEGKYMQSD LVAELRQICRTQRVSETTFEKLVLS IFHSKEPAPSAARQRERVGLDELQLALDPAAKQPRAERA HPAFQKFKVVATLANMRIREQSAGERSLTSEELNRVARYLLNHTESESPTWDDVARKLEVPRHR LRGSSRASLETGGGLTYPPVDDTTVRVMSAEVDWLADWWDCANDESRGHMIDAI SNGCGSEPDD VEDEEVNELI SSATAEDMLKLELLAKKLPSGRVAYSLKTLREVTAAILETGDDLSQAITRLYGV DPGWVPTPAPIEAPVGNPSVDRVLKQVARWLKFASKRWGVPQTVNIEHTREGLKSASLLEEERE RWERFEARREIRQKEMYKRLGI SGPFRRSDQVRYEILDLQDCACLYCGNEINFQTFEVDHI IPR VDASSDSRRTNLAAVCHSCNSAKGGLAFGQWVKRGDCPSGVSLENAIKRVRSWSKDRLGLTEKA MGKRKSEVI SRLKTEMPYEEFDGRSMESVAWMAIELKKRIEGYFNSDRPEGCAAVQVNAYSGRL TACARRAAHVDKRVRLIRLKGDDGHHKNRFDRRNHAMDALVIALMTPAIARTIAVREDRREAQQ LTRAFESWKNFLGSEERMQDRWESWIGDVEYACDRLNELIDADKIPVTENLRLRNSGKLHADQP ESLKKARRGSKRPRPQRYVLGDALPADVINRVTDPGLWTALVRAPGFDSQLGLPADLNRGLKLR GKRI SADFPIDYFPTDSPALAVQGGYVGLEFHHARLYRI IGPKEKVKYALLRVCAIDLCGIDCD DLFEVELKPSS I SMRTADAKLKEAMGNGSAKQIGWLVLGDEIQIDPTKFPKQS IGKFLKECGPV SSWRVSALDTPSKITLKPRLLSNEPLLKTSRVGGHESDLVVAECVEKIMKKTGWVVEINALCQS GLIRVIRRNALGEVRTSPKSGLPI SLNLR SEQ ID NO: 356
MRYRVGLDLGTASVGAAVFSMDEQGNPMELIWHYERLFSEPLVPDMGQLKPKKAARRLARQQRR QIDRRASRLRRIAIVSRRLGIAPGRNDSGVHGNDVPTLRAMAVNERIELGQLRAVLLRMGKKRG YGGTFKAVRKVGEAGEVASGASRLEEEMVALASVQNKDSVTVGEYLAARVEHGLPSKLKVAANN EYYAPEYALFRQYLGLPAIKGRPDCLPNMYALRHQIEHEFERIWATQSQFHDVMKDHGVKEEIR NAIFFQRPLKSPADKVGRCSLQTNLPRAPRAQIAAQNFRIEKQMADLRWGMGRRAEMLNDHQKA VIRELLNQQKELSFRKIYKELERAGCPGPEGKGLNMDRAALGGRDDLSGNTTLAAWRKLGLEDR WQELDEVTQIQVINFLADLGSPEQLDTDDWSCRFMGKNGRPRNFSDEFVAFMNELRMTDGFDRL SKMGFEGGRSSYS IKALKALTEWMIAPHWRETPETHRVDEEAAIRECYPESLATPAQGGRQSKL EPPPLTGNEVVDVALRQVRHTINMMIDDLGSVPAQIVVEMAREMKGGVTRRNDIEKQNKRFASE RKKAAQS IEENGKTPTPARILRYQLWIEQGHQCPYCESNI SLEQALSGAYTNFEHILPRTLTQI GRKRSELVLAHRECNDEKGNRTPYQAFGHDDRRWRIVEQRANALPKKSSRKTRLLLLKDFEGEA LTDES IDEFADRQLHESSWLAKVTTQWLSSLGSDVYVSRGSLTAELRRRWGLDTVIPQVRFESG MPVVDEEGAEITPEEFEKFRLQWEGHRVTREMRTDRRPDKRIDHRHHLVDAIVTALTSRSLYQQ YAKAWKVADEKQRHGRVDVKVELPMPILTIRDIALEAVRSVRI SHKPDRYPDGRFFEATAYGIA QRLDERSGEKVDWLVSRKSLTDLAPEKKS IDVDKVRANI SRIVGEAIRLHI SNIFEKRVSKGMT PQQALREPIEFQGNILRKVRCFYSKADDCVRIEHSSRRGHHYKMLLNDGFAYMEVPCKEGILYG VPNLVRPSEAVGIKRAPESGDFIRFYKGDTVKNIKTGRVYTIKQILGDGGGKLILTPVTETKPA DLLSAKWGRLKVGGRNIHLLRLCAE
SEQ ID NO: 357
MIGEHVRGGCLFDDHWTPNWGAFRLPNTVRTFTKAENPKDGSSLAEPRRQARGLRRRLRRKTQR LEDLRRLLAKEGVLSLSDLETLFRETPAKDPYQLRAEGLDRPLSFPEWVRVLYHITKHRGFQSN RRNPVEDGQERSRQEEEGKLLSGVGENERLLREGGYRTAGEMLARDPKFQDHRRNRAGDYSHTL SRSLLLEEARRLFQSQRTLGNPHASSNLEEAFLHLVAFQNPFASGEDIRNKAGHCSLEPDQIRA PRRSASAETFMLLQKTGNLRLIHRRTGEERPLTDKEREQIHLLAWKQEKVTHKTLRRHLEIPEE WLFTGLPYHRSGDKAEEKLFVHLAGIHEIRKALDKGPDPAVWDTLRSRRDLLDS IADTLTFYKN EDEILPRLESLGLSPENARALAPLSFSGTAHLSLSALGKLLPHLEEGKSYTQARADAGYAAPPP DRHPKLPPLEEADWRNPVVFRALTQTRKVVNALVRRYGPPWCIHLETARELSQPAKVRRRIETE QQANEKKKQQAEREFLDIVGTAPGPGDLLKMRLWREQGGFCPYCEEYLNPTRLAEPGYAEMDHI LPYSRSLDNGWHNRVLVHGKDNRDKGNRTPFEAFGGDTARWDRLVAWVQASHLSAPKKRNLLRE DFGEEAERELKDRNLTDTRFITKTAATLLRDRLTFHPEAPKDPVMTLNGRLTAFLRKQWGLHKN RKNGDLHHALDAAVLAVASRSFVYRLSSHNAAWGELPRGREAENGFSLPYPAFRSEVLARLCPT REEILLRLDQGGVGYDEAFRNGLRPVFVSRAPSRRLRGKAHMETLRSPKWKDHPEGPRTASRIP LKDLNLEKLERMVGKDRDRKLYEALRERLAAFGGNGKKAFVAPFRKPCRSGEGPLVRSLRIFDS GYSGVELRDGGEVYAVADHESMVRVDVYAKKNRFYLVPVYVADVARGIVKNRAIVAHKSEEEWD LVDGSFDFRFSLFPGDLVEIEKKDGAYLGYYKSCHRGDGRLLLDRHDRMPRESDCGTFYVSTRK DVLSMSKYQVDPLGEIRLVGSEKPPFVL
SEQ ID NO: 358
MEKKRKVTLGFDLGIASVGWAIVDSETNQVYKLGSRLFDAPDTNLERRTQRGTRRLLRRRKYRN QKFYNLVKRTEVFGLSSREAIENRFRELS IKYPNI IELKTKALSQEVCPDEIAWILHDYLKNRG YFYDEKETKEDFDQQTVESMPSYKLNEFYKKYGYFKGALSQPTESEMKDNKDLKEAFFFDFSNK EWLKEINYFFNVQKNILSETFIEEFKKIFSFTRDI SKGPGSDNMPSPYGIFGEFGDNGQGGRYE HIWDKNIGKCS IFTNEQRAPKYLPSALIFNFLNELANIRLYSTDKKNIQPLWKLSSVDKLNILL NLFNLPI SEKKKKLTSTNINDIVKKES IKS IMI SVEDIDMIKDEWAGKEPNVYGVGLSGLNIEE SAKENKFKFQDLKILNVLINLLDNVGIKFEFKDRNDI IKNLELLDNLYLFLIYQKESNNKDSS I DLFIAKNESLNIENLKLKLKEFLLGAGNEFENHNSKTHSLSKKAIDEILPKLLDNNEGWNLEAI KNYDEEIKSQIEDNSSLMAKQDKKYLNDNFLKDAILPPNVKVTFQQAILIFNKI IQKFSKDFEI DKVVIELAREMTQDQENDALKGIAKAQKSKKSLVEERLEANNIDKSVFNDKYEKLIYKIFLWI S QDFKDPYTGAQI SVNEIVNNKVEIDHI IPYSLCFDDSSANKVLVHKQSNQEKSNSLPYEYIKQG HSGWNWDEFTKYVKRVFVNNVDS ILSKKERLKKSENLLTASYDGYDKLGFLARNLNDTRYATIL FRDQLNNYAEHHLIDNKKMFKVIAMNGAVTSFIRKNMSYDNKLRLKDRSDFSHHAYDAAI IALF SNKTKTLYNLIDPSLNGI I SKRSEGYWVIEDRYTGEIKELKKEDWTS IKNNVQARKIAKEIEEY LIDLDDEVFFSRKTKRKTNRQLYNETIYGIATKTDEDGITNYYKKEKFS ILDDKDIYLRLLRER EKFVINQSNPEVIDQI IEI IESYGKENNIPSRDEAINIKYTKNKINYNLYLKQYMRSLTKSLDQ FSEEFINQMIANKTFVLYNPTKNTTRKIKFLRLVNDVKINDIRKNQVINKFNGKNNEPKAFYEN INSLGAIVFKNSANNFKTLS INTQIAIFGDKNWDIEDFKTYNMEKIEKYKEIYGIDKTYNFHSF IFPGTILLDKQNKEFYYI SS IQTVRDI IEIKFLNKIEFKDENKNQDTSKTPKRLMFGIKS IMNN YEQVDI SPFGINKKIFE SEQ ID NO: 359
MGYRIGLDVGITSTGYAVLKTDKNGLPYKILTLDSVIYPRAENPQTGASLAEPRRIKRGLRRRT RRTKFRKQRTQQLFIHSGLLSKPEIEQILATPQAKYSVYELRVAGLDRRLTNSELFRVLYFFIG HRGFKSNRKAELNPENEADKKQMGQLLNS IEEIRKAIAEKGYRTVGELYLKDPKYNDHKRNKGY IDGYLSTPNRQMLVDEIKQILDKQRELGNEKLTDEFYATYLLGDENRAGIFQAQRDFDEGPGAG PYAGDQIKKMVGKDIFEPTEDRAAKATYTFQYFNLLQKMTSLNYQNTTGDTWHTLNGLDRQAII DAVFAKAEKPTKTYKPTDFGELRKLLKLPDDARFNLVNYGSLQTQKEIETVEKKTRFVDFKAYH DLVKVLPEEMWQSRQLLDHIGTALTLYSSDKRRRRYFAEELNLPAELIEKLLPLNFSKFGHLS I KSMQNI IPYLEMGQVYSEATTNTGYDFRKKQI SKDTIREEITNPVVRRAVTKTIKIVEQI IRRY GKPDGI IELARELGRNFKERGDIQKRQDKNRQTNDKIAAELTELGIPVNGQ I IRYKLHKEQN GVDPYTGDQIPFERAFSEGYEVDHI IPYS I SWDDSYTNKVLTSAKCNREKGNRIPMVYLANNEQ RLNALT IAD I IRNSRKRQKLLKQKLSDEELKDWKQR INDTRFITRVLYNYFRQAIEFNPEL EKKQRVLPLNGEVTSKIRSRWGFLKVREDGDLHHAIDATVIAAITPKFIQQVTKYSQHQEVKNN QALWHDAEIKDAEYAAEAQRMDADLFNKIFNGFPLPWPEFLDELLARI SDNPVEMMKSRSWNTY TPIEIAKLKPVFVVRLANHKI SGPAHLDTIRSAKLFDEKGIVLSRVS ITKLKINKKGQVATGDG IYDPENSNNGDKVVYSAIRQALEAHNGSGELAFPDGYLEYVDHGTKKLVRKVRVAKKVSLPVRL KNKAAADNGSMVRIDVFNTGKKFVFVPIYIKDTVEQVLPNKAIARGKSLWYQITESDQFCFSLY PGDMVHIESKTGIKPKYSNKENNTSVVPIKNFYGYFDGADIATAS ILVRAHDSSYTARS IGIAG LLKFEKYQVDYFGRYHKVHEKKRQLFVKRDE
SEQ ID NO: 360
MQKNINTKQNHIYIKQAQKIKEKLGDKPYRIGLDLGVGS IGFAIVSMEENDGNVLLPKEI IMVG SRIFKASAGAADRKLSRGQRNNHRHTRERMRYLWKVLAEQKLALPVPADLDRKENSSEGETSAK RFLGDVLQKDIYELRVKSLDERLSLQELGYVLYHIAGHRGSSAIRTFENDSEEAQKENTENKKI AG IKRLMAKKNYRTYGEYLYKEFFENKEKHKREKI SNAANNHKFSPTRDLVIKEAEAILKKQA GKDGFHKELTEEYIEKLTKAIGYESEKLIPESGFCPYLKDEKRLPASHKLNEERRLWETLNNAR YSDPIVDIVTGEITGYYEKQFTKEQKQKLFDYLLTGSELTPAQTKKLLGLKNTNFEDI ILQGRD KKAQKIKGYKLIKLESMPFWARLSEAQQDSFLYDWNSCPDEKLLTEKLSNEYHLTEEEIDNAFN EIVLSSSYAPLGKSAMLI ILEKIKNDLSYTEAVEEALKEGKLTKEKQAIKDRLPYYGAVLQEST QKI IAKGFSPQFKDKGYKTPHTNKYELEYGRIANPVVHQTLNELRKLVNEI IDILGKKPCEIGL ETARELKKSAEDRSKLSREQNDNESNRNRIYEIYIRPQQQVI ITRRENPRNYILKFELLEEQKS QCPFCGGQI SPNDI INNQADIEHLFPIAESEDNGRNNLVI SHSACNADKAKRSPWAAFASAAKD SKYDYNRILSNVKE IPHKAWRFNQGAFEKFIENKPMAARFKTDNSYI SKVAHKYLACLFEKPN IICVKGSLTAQLRMAWGLQGLMIPFAKQLITEKESESFNKDVNSNKKIRLDNRHHALDAIVIAY ASRGYGNLLNKMAGKDYKINYSERNWLSKILLPPNNIVWENIDADLESFESSVKTALKNAFISV KHDHSDNGELVKGTMYKIFYSERGYTLTTYKKLSALKLTDPQKKKTPKDFLETALLKFKGRESE MKNEKIKSAIENNKRLFDVIQDNLEKAKKLLEEENEKSKAEGKKEKNINDAS IYQKAI SLSGDK YVQLSKKEPGKFFAI SKPTPTTTGYGYDTGDSLCVDLYYDNKGKLCGEI IRKIDAQQKNPLKYK EQGFTLFERIYGGDILEVDFDIHSDKNSFRNNTGSAPENRVFIKVGTFTEITNNNIQIWFGNI I KSTGGQDDSFTINSMQQYNPRKLILSSCGFIKYRSPILKNKEG
SEQ ID NO: 361
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAI SRALEKEGLKDKKSPLNLSPELQDEIGT AFSLFKTDEDITGRLKDRIQPEILEALLKHI SFDKFVQI SLKALRRIVPLMEQGKRYDEACAEI YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR
SEQ ID NO: 362
MQTTNLSYILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRLARS TRRLIRRRAHRLLLAKRFLKREGILSTIDLEKGLPNQAWELRVAGLERRLSAIEWGAVLLHLIK HRGYLSKRKNESQTNNKELGALLSGVAQNHQLLQSDDYRTPAELALKKFAKEEGHIRNQRGAYT HTFNRLDLLAELNLLFAQQHQFGNPHCKEHIQQYMTELLMWQKPALSGEAILKMLGKCTHEKNE FKAAKHTYSAERFVWLTKLNNLRILEDGAERALNEEERQLLINHPYEKSKLTYAQVRKLLGLSE QAIFKHLRYSKENAESATFMELKAWHAIRKALENQGLKDTWQDLAKKPDLLDEIGTAFSLYKTD EDIQQYLTNKVPNSVINALLVSLNFDKFIELSLKSLRKILPLMEQGKRYDQACREIYGHHYGEA NQKTSQLLPAIPAQEIRNPVVLRTLSQARKVINAI IRQYGSPARVHIETGRELGKSFKERREIQ KQQEDNRTKRESAVQKFKELFSDFSSEPKSKDILKFRLYEQQHGKCLYSGKEINIHRLNEKGYV EIDHALPFSRTWDDSFNNKVLVLASENQNKGNQTPYEWLQGKINSERWKNFVALVLGSQCSAAK KQRLLTQVIDDNKFIDRNLNDTRYIARFLSNYIQENLLLVGKNKKNVFTPNGQITALLRSRWGL IKARENNNRHHALDAIVVACATPSMQQKITRFIRFKEVHPYKIENRYEMVDQESGEI I SPHFPE PWAYFRQEVNIRVFDNHPDTVLKEMLPDRPQANHQFVQPLFVSRAPTRKMSGQGHMETIKSAKR LAEGI SVLRIPLTQLKPNLLENMVNKEREPALYAGLKARLAEFNQDPAKAFATPFYKQGGQQVK AIRVEQVQKSGVLVRENNGVADNAS IVRTDVFIKNNKFFLVPIYTWQVAKGILPNKAIVAHKNE DEWEEMDEGAKFKFSLFPNDLVELKTKKEYFFGYYIGLDRATG I SLKEHDGEI SKGKDGVYRV GVKLALSFEKYQVDELGKNRQICRPQQRQPVR SEQ ID NO: 363
MGIRFAFDLGTNS IGWAVWRTGPGVFGEDTAASLDGSGVLIFKDGRNPKDGQSLATMRRVPRQS RKRRDRFVLRRRDLLAALRKAGLFPVDVEEGRRLAATDPYHLRAKALDESLTPHEMGRVIFHLN QRRGFRSNRKADRQDREKGKIAEGSKRLAETLAATNCRTLGEFLWSRHRGTPRTRSPTRIRMEG EGAKALYAFYPTREMVRAEFERLWTAQSRFAPDLLTPERHEEIAGILFRQRDLAPPKIGCCTFE PSERRLPRALPSVEARGIYERLAHLRITTGPVSDRGLTRPERDVLASALLAGKSLTFKAVRKTL KILPHALVNFEEAGEKGLDGALTAKLLSKPDHYGAAWHGLSFAEKDTFVGKLLDEADEERLIRR LVTENRLSEDAARRCAS IPLADGYGRLGRTANTEILAALVEETDETGTVVTYAEAVRRAGERTG RNWHHSDERDGVILDRLPYYGEILQRHVVPGSGEPEEKNEAARWGRLANPTVHIGLNQLRKVVN RLIAAHGRPDQIVVELARELKLNREQKERLDRENRKNREENERRTAILAEHGQRDTAENKIRLR LFEEQARANAGIALCPYTGRAIGIAELFTSEVEIDHILPVSLTLDDSLANRVLCRREANREKRR QTPFQAFGATPAWNDIVARAAKLPPNKRWRFDPAALERFEREGGFLGRQLNETKYLSRLAKIYL GKICDPDRVYVTPGTLTGLLRARWGLNS ILSDSNFKNRSDHRHHAVDAVVIGVLTRGMIQRIAH DAARAEDQDLDRVFRDVPVPFEDFRDHVRERVSTITVAVKPEHGKGGALHEDTSYGLVPDTDPN AALGNLVVRKPIRSLTAGEVDRVRDRALRARLGALAAPFRDESGRVRDAKGLAQALEAFGAENG IRRVRILKPDASVVTIADRRTGVPYRAVAPGENHHVDIVQMRDGSWRGFAASVFEVNRPGWRPE WEVKKLGGKLVMRLHKGDMVELSDKDGQRRVKVVQQIEI SANRVRLSPHNDGGKLQDRHADADD PFRWDLATIPLLKDRGCVAVRVDPIGVVTLRRSNV SEQ ID NO: 364
MMEVFMGRLVLGLDIGITSVGFGI IDLDESEIVDYGVRLFKEGTAAENETRRTKRGGRRLKRRR VTRREDMLHLLKQAGI I STSFHPLNNPYDVRVKGLNERLNGEELATALLHLCKHRGSSVETIED DEAKAKEAGETKKVLSMNDQLLKSGKYVCEIQKERLRTNGHIRGHENNFKTRAYVDEAFQILSH QDLSNELKSAI ITI I SRKRMYYDGPGGPLSPTPYGRYTYFGQKEPIDLIEKMRGKCSLFPNEPR APKLAYSAELFNLLNDLNNLS IEGEKLTSEQKAMILKIVHEKGKITPKQLAKEVGVSLEQIRGF RIDTKGSPLLSELTGYKMIREVLEKSNDEHLEDHVFYDEIAEILTKTKDIEGRKKQI SELSSDL NEESVHQLAGLTKFTAYHSLSFKALRLINEEMLKTELNQMQS ITLFGLKQNNELSVKGMK IQA DDTAILSPVAKRAQRETFKVVNRLREIYGEFDS IVVEMAREKNSEEQRKAIRERQKFFEMRNKQ VADI IGDDRKINAKLREKLVLYQEQDGKTAYSLEPIDLKLLIDDPNAYEVDHI IPI S I SLDDS I TNKVLVTHRENQEKGNLTPI SAFVKGRFTKGSLAQYKAYCLKLKEK IKTNKGYRKKVEQYLLN ENDIYKYDIQKEFINRNLVDTSYASRVVLNTLTTYFKQNEIPTKVFTVKGSLTNAFRRKINLKK DRDEDYGHHAIDALI IASMPKMRLLSTIFSRYKIEDIYDESTGEVFSSGDDSMYYDDRYFAFIA SLKAIKVRKFSHKIDTKPNRSVADETIYSTRVIDGKEKVVKKYKDIYDPKFTALAEDILNNAYQ EKYLMALHDPQTFDQIVKVVNYYFEEMSKSEKYFTKDKKGRIKI SGMNPLSLYRDEHGMLKKYS KKGDGPAITQMKYFDGVLGNHIDI SAHYQVRDKKVVLQQI SPYRTDFYYSKENGYKFVTIRYKD VRWSEKKKKYVIDQQDYAMKKAEKKIDDTYEFQFSMHRDELIGITKAEGEALIYPDETWHNFNF FFHAGETPEILKFTATNNDKSNKIEVKPIHCYCKMRLMPTI SKKIVRIDKYATDVVGNLYKVKK NTLKFEFD
SEQ ID NO: 365
MKKILGVDLGITSFGYAILQETGKDLYRCLDNSVVMRNNPYDEKSGESSQS IRSTQKSMRRLIE KRKKRIRCVAQTMERYGILDYSETMKINDPKNNPIKNRWQLRAVDAWKRPLSPQELFAIFAHMA KHRGYKS IATEDLIYELELELGLNDPEKESEKKADERRQVYNALRHLEELRKKYGGETIAQTIH RAVEAGDLRSYRNHDDYEKMIRREDIEEEIEKVLLRQAELGALGLPEEQVSELIDELKACITDQ EMPTIDESLFGKCTFYKDELAAPAYSYLYDLYRLYKKLADLNIDGYEVTQEDREKVIEWVEKKI AQGKNLKKITHKDLRKILGLAPEQKIFGVEDERIVKGKKEPRTFVPFFFLADIAKFKELFASIQ KHPDALQIFRELAEILQRSKTPQEALDRLRALMAGKGIDTDDRELLELFKNKRSGTRELSHRYI LEALPLFLEGYDEKEVQRILGFDDREDYSRYPKSLRHLHLREGNLFEKEENPINNHAVKSLASW ALGLIADLSWRYGPFDEI ILETTRDALPEKIRKEIDKAMREREKALDKI IGKYKKEFPS IDKRL ARKIQLWERQKGLDLYSGKVINLSQLLDGSADIEHIVPQSLGGLSTDYNTIVTLKSVNAAKGNR LPGDWLAGNPDYRERIGMLSEKGLIDWKKRKNLLAQSLDEIYTENTHSKGIRATSYLEALVAQV LKRYYPFPDPELRKNGIGVRMIPGKVTSKTRSLLGIKSKSRETNFHHAEDALILSTLTRGWQNR LHRMLRDNYGKSEAELKELWKKYMPHIEGLTLADYIDEAFRRFMSKGEESLFYRDMFDTIRS I S YWVDKKPLSASSHKETVYSSRHEVPTLRKNILEAFDSLNVIKDRHKLTTEEFMKRYDKEIRQKL WLHRIGNTNDESYRAVEERATQIAQILTRYQLMDAQNDKEIDEKFQQALKELITSPIEVTGKLL RKMRFVYDKLNAMQIDRGLVETDKNMLGIHI SKGPNEKLIFRRMDVNNAHELQKERSGILCYLN EMLFIFNKKGLIHYGCLRSYLEKGQGSKYIALFNPRFPANPKAQPSKFTSDSKIKQVGIGSATG I IKAHLDLDGHVRSYEVFGTLPEGS IEWFKEESGYGRVEDDPHH
SEQ ID NO: 366
MRPIEPWILGLDIGTDSLGWAVFSCEEKGPPTAKELLGGGVRLFDSGRDAKDHTSRQAERGAFR RARRQTRTWPWRRDRLIALFQAAGLTPPAAETRQIALALRREAVSRPLAPDALWAALLHLAHHR GFRSNRIDKRERAAAKALAKAKPAKATAKATAPAKEADDEAGFWEGAEAALRQRMAASGAPTVG ALLADDLDRGQPVRMRYNQSDRDGVVAPTRALIAEELAEIVARQSSAYPGLDWPAVTRLVLDQR PLRSKGAGPCAFLPGEDRALRALPTVQDFI IRQTLANLRLPSTSADEPRPLTDEEHAKALALLS TARFVEWPALRRALGLKRGVKFTAETERNGAKQAARGTAGNLTEAILAPLIPGWSGWDLDRKDR VFSDLWAARQDRSALLALIGDPRGPTRVTEDETAEAVADAIQIVLPTGRASLSAKAARAIAQAM APGIGYDEAVTLALGLHHSHRPRQERLARLPYYAAALPDVGLDGDPVGPPPAEDDGAAAEAYYG RIG I SVHIALNETRKIVNALLHRHGPILRLVMVETTRELKAGADERKRMIAEQAERERENAEI DVELRKSDRWMANARERRQRVRLARRQNNLCPYTSTPIGHADLLGDAYDIDHVIPLARGGRDSL DNMVLCQSDANKTKGDKTPWEAFHDKPGWIAQRDDFLARLDPQTAKALAWRFADDAGERVARKS AEDEDQGFLPRQLTDTGYIARVALRYLSLVTNEPNAVVATNGRLTGLLRLAWDITPGPAPRDLL PTPRDALRDDTAARRFLDGLTPPPLAKAVEGAVQARLAALGRSRVADAGLADALGLTLASLGGG GKNRADHRHHFIDAAMIAVTTRGLINQINQASGAGRILDLRKWPRTNFEPPYPTFRAEVMKQWD HIHPS IRPAHRDGGSLHAATVFGVRNRPDARVLVQRKPVEKLFLDANAKPLPADKIAEI IDGFA SPRMAKRFKALLARYQAAHPEVPPALAALAVARDPAFGPRGMTANTVIAGRSDGDGEDAGLITP FRANPKAAVRTMGNAVYEVWEIQVKGRPRWTHRVLTRFDRTQPAPPPPPENARLVMRLRRGDLV YWPLESGDRLFLVKKMAVDGRLALWPARLATGKATALYAQLSCPNINLNGDQGYCVQSAEGIRK EKIRTTSCTALGRLRLSKKAT
SEQ ID NO: 367
MKYTLGLDVGIASVGWAVIDKDNNKI IDLGVRCFDKAEESKTGESLATARRIARGMRRRI SRRS QRLRLVKKLFVQYEI IKDSSEFNRIFDTSRDGWKDPWELRYNALSRILKPYELVQVLTHITKRR GFKSNRKEDLSTTKEGVVITS IKNNSEMLRTKNYRTIGEMIFMETPENSNKRNKVDEYIHTIAR EDLLNEIKYIFS IQRKLGSPFVTEKLEHDFLNIWEFQRPFASGDS ILSKVGKCTLLKEELRAPT SCYTSEYFGLLQS INNLVLVEDNNTLTLNNDQRAKI IEYAHFKNEIKYSEIRKLLDIEPEILFK AHNLTHKNPSGNNESKKFYEMKSYHKLKSTLPTDIWGKLHSNKESLDNLFYCLTVYKNDNEIKD YLQANNLDYLIEYIAKLPTFNKFKHLSLVAMKRI IPFMEKGYKYSDACNMAELDFTGSSKLEKC NKLTVEPI IENVTNPVVIRALTQARKVINAI IQKYGLPYMV IELAREAGMTRQDRDNLKKEHE NNRKAREKI SDLIRQNGRVASGLDILKWRLWEDQGGRCAYSGKPIPVCDLLNDSLTQIDHIYPY SRSMDDSYMNKVLVLTDENQNKRSYTPYEVWGSTEKWEDFEARIYSMHLPQSKEKRLLNRNFIT KDLDSFI SRNLNDTRYI SRFLKNYIESYLQFSNDSPKSCVVCVNGQCTAQLRSRWGLNKNREES DLHHALDAAVIACADRKI IKEITNYYNERENHNYKVKYPLPWHSFRQDLMETLAGVFI SRAPRR KITGPAHDETIRSPKHFNKGLTSVKIPLTTVTLEKLETMVKNTKGGI SDKAVYNVLKNRLIEHN NKPLKAFAEKIYKPLKNGTNGAI IRS IRVETPSYTGVFRNEGKGI SDNSLMVRVDVFKKKDKYY LVPIYVAHMIKKELPSKAIVPLKPESQWELIDSTHEFLFSLYQNDYLVIKTKKGITEGYYRSCH RGTGSLSLMPHFANNKNVKIDIGVRTAI S IEKYNVDILGNKS IVKGEPRRGMEKYNSFKSN
SEQ ID NO: 368
MIRTLGIDIGIAS IGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNKESLALPRTLARSAR RRNARKKGRIQQVKHYLSKALGLDLECFVQGEKLATLFQTSKDFLSPWELRERALYRVLDKEEL ARVILHIAKRRGYDDITYGVEDNDSGKIKKAIAENSKRIKEEQCKTIGEMMYKLYFQKSLNVRN KKESYNRCVGRSELREELKTIFQIQQELKSPWVNEELIYKLLGNPDAQSKQEREGLIFYQRPLK GFGDKIGKCSHIKKGENSPYRACKHAPSAEEFVALTKS INFLKNLTNRHGLCFSQEDMCVYLGK ILQEAQKNEKGLTYSKLKLLLDLPSDFEFLGLDYSGKNPEKAVFLSLPSTFKLNKITQDRKTQD KIANILGANKDWEAILKELESLQLSKEQIQTIKDAKLNFSKHINLSLEALYHLLPLMREGKRYD EGVEILQERGIFSKPQPKNRQLLPPLSELAKEESYFDIPNPVLRRALSEFRKVVNALLEKYGGF HYFHIELTRDVCKAKSARMQLEKINKKNKSENDAASQLLEVLGLPNTYNNRLKCKLWKQQEEYC LYSGEKITIDHLKDQRALQIDHAFPLSRSLDDSQSNKVLCLTSSNQEKSNKTPYEWLGSDEKKW DMYVGRVYSSNFSPSKKRKLTQKNFKERNEEDFLARNLVDTGYIGRVTKEYIKHSLSFLPLPDG KKEHIRI I SGSMTSTMRSFWGVQEKNRDHHLHHAQDAI I IACIEPSMIQKYTTYLKDKETHRLK SHQKAQILREGDHKLSLRWPMSNFKDKIQES IQNI IPSHHVSHKVTGELHQETVRTKEFYYQAF GGEEGVKKALKFGKIREINQGIVDNGAMVRVDIFKSKDKGKFYAVPIYTYDFAIGKLPNKAIVQ GKKNGI IKDWLEMDENYEFCFSLFKNDCIKIQTKEMQEAVLAIYKSTNSAKATIELEHLSKYAL KNEDEEKMFTDTDKEKNKTMTRESCGIQGLKVFQKVKLSVLGEVLEHKPRNRQNIALKTTPKHV SEQ ID NO: 369
MKYS IGLDIGIASVGWSVINKDKERIEDMGVRIFQKAENPKDGSSLASSRREKRGSRRRNRRKK HRLDRIK ILCESGLVKKNEIEKIYKNAYLKSPWELRAKSLEAKI SNKEIAQILLHIAKRRGFK SFRKTDRNADDTGKLLSGIQENKKIMEEKGYLTIGDMVAKDPKFNTHVRNKAGSYLFSFSRKLL EDEVRKIQAKQKELGNTHFTDDVLEKYIEVFNSQRNFDEGPSKPSPYYSEIGQIAKMIGNCTFE SSEKRTAKNTWSGERFVFLQKLNNFRIVGLSGKRPLTEEERDIVEKEVYLKKEVRYEKLRKILY LKEEERFGDLNYSKDEKQDKKTEKTKFISLIGNYTIKKLNLSEKLKSEIEEDKSKLDKI IEILT FNKSDKTIESNLKKLELSREDIEILLSEEFSGTLNLSLKAIKKILPYLEKGLSYNEACEKADYD YKNNGIKFKRGELLPVVDKDLIANPVVLRAI SQTRKVVNAI IRKYGTPHTIHVEVARDLAKSYD DRQTI IKENKKRELENEKTKKFI SEEFGIKNVKGKLLLKYRLYQEQEGRCAYSRKELSLSEVIL DESMTDIDHI IPYSRSMDDSYSNKVLVLSGENRKKSNLLPKEYFDRQGRDWDTFVLNVKAMKIH PRKKSNLLKEKFTREDNKDWKSRALNDTRYI SRFVANYLENALEYRDDSPKKRVFMIPGQLTAQ LRARWRLNKVRENGDLHHALDAAVVAVTDQKAINNI SNI SRYKELKNCKDVIPS IEYHADEETG EVYFEEVKDTRFPMPWSGFDLELQKRLESENPREEFYNLLSDKRYLGWFNYEEGFIEKLRPVFV SRMPNRGVKGQAHQETIRSSKKI SNQIAVSKKPLNS IKLKDLEKMQGRDTDRKLYEALKNRLEE YDDKPEKAFAEPFYKPTNSGKRGPLVRGIKVEEKQNVGVYVNGGQASNGSMVRIDVFRKNGKFY TVPIYVHQTLLKELPNRAINGKPYKDWDLIDGSFEFLYSFYPNDLIEIEFGKSKS IKNDNKLTK TEIPEVNLSEVLGYYRGMDTSTGAATIDTQDGKIQMRIGIKTVKNIKKYQVDVLGNVYKVKREK RQTF SEQ ID NO: 370
MSKKVSRRYEEQAQEICQRLGSRPYS IGLDLGVGS IGVAVAAYDPIKKQPSDLVFVSSRIFIPS TGAAERRQKRGQRNSLRHRANRLKFLWKLLAERNLMLSYSEQDVPDPARLRFEDAVVRANPYEL RLKGLNEQLTLSELGYALYHIANHRGSSSVRTFLDEEKSSDDKKLEEQQAMTEQLAKEKGI STF IEVLTAFNTNGLIGYRNSESVKSKGVPVPTRDI I SNEIDVLLQTQKQFYQEILSDEYCDRIVSA ILFENEKIVPEAGCCPYFPDEKKLPRCHFLNEERRLWEAINNARIKMPMQEGAAKRYQSASFSD EQRHILFHIARSGTDITPKLVQKEFPALKTS I IVLQGKEKAIQKIAGFRFRRLEEKSFWKRLSE EQKDDFFSAWTNTPDDKRLSKYLMKHLLLTENEVVDALKTVSLIGDYGPIGKTATQLLMKHLED GLTYTEALERGMETGEFQELSVWEQQSLLPYYGQILTGSTQALMGKYWHSAFKEKRDSEGFFKP NTNSDEEKYGRIANPVVHQTLNELRKLMNELITILGAKPQEITVELARELKVGAEKREDI IKQQ TKQEKEAVLAYSKYCEPNNLDKRYIERFRLLEDQAFVCPYCLEHI SVADIAAGRADVDHIFPRD DTADNSYGNKVVAHRQCNDIKGKRTPYAAFSNTSAWGPIMHYLDETPGMWRKRRKFETNEEEYA KYLQSKGFVSRFESDNSYIAKAAKEYLRCLFNPNNVTAVGSLKGMETS ILRKAWNLQGIDDLLG SRHWSKDADTSPTMRKNRDDNRHHGLDAIVALYCSRSLVQMINTMSEQGKRAVEIEAMIPIPGY ASEPNLSFEAQRELFRKKILEFMDLHAFVSMKTDNDANGALLKDTVYS ILGADTQGEDLVFVVK KKIKDIGVKIGDYEEVASAIRGRITDKQPKWYPMEMKDKIEQLQSKNEAALQKYKESLVQAAAV LEESNRKLIESGKKPIQLSEKTI SKKALELVGGYYYLI SNNKRTKTFVVKEPSNEVKGFAFDTG SNLCLDFYHDAQGKLCGEI IRKIQAMNPSYKPAYMKQGYSLYVRLYQGDVCELRASDLTEAESN LAKTTHVRLPNAKPGRTFVI I ITFTEMGSGYQIYFSNLAKSKKGQDTSFTLTTIKNYDVRKVQL SSAGLVRYVSPLLVDKIEKDEVALCGE
SEQ ID NO: 371 MNQKFILGLDIGITSVGYGLIDYETKNI IDAGVRLFPEANVENNEGRRSKRGSRRLKRRRIHRL ERVKKLLEDYNLLDQSQIPQSTNPYAIRVKGLSEALSKDELVIALLHIAKRRGIHKIDVIDSND DVGNELSTKEQLNKNSKLLKDKFVCQIQLERMNEGQVRGEKNRFKTADI IKEI IQLLNVQKNFH QLDENFINKYIELVEMRREYFEGPGKGSPYGWEGDPKAWYETLMGHCTYFPDELRSVKYAYSAD LFNALNDLNNLVIQRDGLSKLEYHEKYHI IENVFKQKKKPTLKQIANEINVNPEDIKGYRITKS GKPQFTEFKLYHDLKSVLFDQS ILENEDVLDQIAEILTIYQDKDS IKSKLTELDILLNEEDKEN IAQLTGYTGTHRLSLKCIRLVLEEQWYSSRNQMEIFTHLNIKPKKINLTAANKIPKAMIDEFIL SPVVKRTFGQAINLINKI IEKYGVPEDI I IELARENNSKDKQKFINEMQKKNENTRKRINEI IG KYGNQNAKRLVEKIRLHDEQEGKCLYSLES IPLEDLLNNPNHYEVDHI IPRSVSFDNSYHNKVL VKQSENSKKSNLTPYQYFNSGKSKLSYNQFKQHILNLSKSQDRI SKKKKEYLLEERDINKFEVQ KEFINRNLVDTRYATRELTNYLKAYFSANNMNVKVKTINGSFTDYLRKVWKFKKERNHGYKHHA EDALI IA ADFLFKENKKLKAVNSVLEKPEIESKQLDIQVDSEDNYSEMFI IPKQVQDIKDFRN FKYSHRVDKKPNRQLINDTLYSTRKKDNSTYIVQTIKDIYAKDNTTLKKQFDKSPEKFLMYQHD PRTFEKLEVIMKQYANEKNPLAKYHEETGEYLTKYSKKNNGPIVKSLKYIGNKLGSHLDVTHQF KSSTKKLVKLS IKPYRFDVYLTDKGYKFITI SYLDVLKKDNYYYIPEQKYDKLKLGKAIDKNAK FIASFYKNDLIKLDGEIYKI IGVNSDTRNMIELDLPDIRYKEYCELN IKGEPRIKKTIGKKVN SIEKLTTDVLGNVFTNTQYTKPQLLFKRGN
SEQ ID NO: 372
MIMKLEKWRLGLDLGTNS IGWSVFSLDKDNSVQDLIDMGVRIFSDGRDPKTKEPLAVARRTARS QRKLIYRRKLRRKQVFKFLQEQGLFPKTKEECMTLKSLNPYELRIKALDEKLEPYELGRALFNL AVRRGFKSNRKDGSREEVSEKKSPDEIKTQADMQTHLEKAIKENGCRTITEFLYKNQGENGGIR FAPGRMTYYPTRKMYEEEFNLIRSKQEKYYPQVDWDDIYKAIFYQRPLKPQQRGYCIYENDKER TFKAMPCSQKLRILQDIGNLAYYEGGSKKRVELNDNQDKVLYELLNSKDKVTFDQMRKALCLAD SNSFNLEENRDFLIGNPTAVKMRSKNRFGKLWDEIPLEEQDLI IETI ITADEDDAVYEVIKKYD LTQEQRDFIVKNTILQSGTSMLCKEVSEKLVKRLEEIADLKYHEAVESLGYKFADQTVEKYDLL PYYGKVLPGSTMEIDLSAPETNPEKHYGKI SNPTVHVALNQTRVVV ALIKEYGKPSQIAIELS RDLKNNVEKKAEIARKQNQRAKENIAINDTI SALYHTAFPGKSFYPNRNDRMKYRLWSELGLGN KCIYCGKGI SGAELFTKEIEIEHILPFSRTLLDAESNLTVAHSSCNAFKAERSPFEAFGTNPSG YSWQEI IQRANQLKNTSKKNKFSPNAMDSFEKDSSFIARQLSDNQYIAKAALRYLKCLVENPSD VWTTNGSMTKLLRDKWEMDS ILCRKFTEKEVALLGLKPEQIGNYKKNRFDHRHHAIDAVVIGLT DRSMVQKLATKNSHKGNRIEIPEFPILRSDLIEKVKNIVVSFKPDHGAEGKLSKETLLGKIKLH GKETFVCRENIVSLSEKNLDDIVDEIKSKVKDYVAKHKGQKIEAVLSDFSKENGIKKVRCVNRV QTPIEITSGKI SRYLSPEDYFAAVIWEIPGEKKTFKAQYIRRNEVEKNSKGLNVVKPAVLENGK PHPAAKQVCLLHKDDYLEFSDKGKMYFCRIAGYAATNNKLDIRPVYAVSYCADWINSTNETMLT GYWKPTPTQNWVSVNVLFDKQKARLVTVSPIGRVFRK
SEQ ID NO: 373
MSSKAIDSLEQLDLFKPQEYTLGLDLGIKS IGWAILSGERIANAGVYLFETAEELNSTGNKLI S KAAERGRKRRIRRMLDRKARRGRHIRYLLEREGLPTDELEEVVVHQSNRTLWDVRAEAVERKLT KQELAAVLFHLVRHRGYFPNTKKLPPDDESDSADEEQGKINRATSRLREELKASDCKTIGQFLA QNRDRQRNREGDYSNLMARKLVFEEALQILAFQRKQGHELSKDFEKTYLDVLMGQRSGRSPKLG NCSLIPSELRAPSSAPSTEWFKFLQNLGNLQI SNAYREEWS IDAPRRAQI IDACSQRSTSSYWQ IRRDFQIPDEYRFNLVNYERRDPDVDLQEYLQQQERKTLANFRNWKQLEKI IGTGHPIQTLDEA ARLITLIKDDEKLSDQLADLLPEASDKAITQLCELDFTTAAKI SLEAMYRILPHMNQGMGFFDA CQQESLPEIGVPPAGDRVPPFDEMYNPVVNRVLSQSRKLINAVIDEYGMPAKIRVELARDLGKG RELRERIKLDQLDKSKQNDQRAEDFRAEFQQAPRGDQSLRYRLWKEQNCTCPYSGRMIPVNSVL SEDTQIDHILPI SQSFDNSLSNKVLCFTEENAQKSNRTPFEYLDAADFQRLEAI SGNWPEAKRN KLLHKSFGKVAEEWKSRALNDTRYLTSALADHLRHHLPDSKIQTVNGRITGYLRKQWGLEKDRD KHTHHAVDAIVVACTTPAIVQQVTLYHQDIRRYKKLGEKRPTPWPETFRQDVLDVEEEIFITRQ PKKVSGGIQTKDTLRKHRSKPDRQRVALTKVKLADLERLVEKDASNRNLYEHLKQCLEESGDQP TKAFKAPFYMPSGPEAKQRPILSKVTLLREKPEPPKQLTELSGGRRYDSMAQGRLDIYRYKPGG KRKDEYRVVLQRMIDLMRGEENVHVFQKGVPYDQGPEIEQNYTFLFSLYFDDLVEFQRSADSEV IRGYYRTFNIANGQLKI STYLEGRQDFDFFGANRLAHFAKVQVNLLGKVIK
SEQ ID NO: 374
MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDGRNPKDGSSLAVTRRAARAMR RRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNPYALRAKGLQEALLPGEFARALFHINQ RRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMAEQGSRTVGEYLWTRLQQGQGVRARYREKPYTT EEGKKRIDKSYDLYIDRAMIEQEFDALWAAQAAFNPTLFHEAARADLKDTLLHQRPLRPVKPGR CTLLPEEERAPLALPSTQRFRIHQEVNHLRLLDENLREVALTLAQRDAVVTALETKAKLSFEQI RKLLKLSGSVQFNLEDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEIVWQLVTEEGEGA LIAWLQTHTGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITYDKAVQAAGFDHHSQ LGFEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPEDPDEKRYGKIANPTVHI GLNQVRMVVNALIRRYGRPTEVVIELARDLKQSREQKVEAQRRQADNQRRNARIRRS IAEVLGI GEERVRGSDIQKWICWEELSFDAADRRCPYSGVQI SAAMLLSDEVEVEHILPFSKTLDDSLNNR TVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPLRKRYRFAPDGYERWLGDDKDFL ARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALLRGKFGLNDVLGLDGEKNRNDHRHHAVDA CVIGVTDQGLMQRFATASAQARGDGLTRLVDGMPMPWPTYRDHVERAVRHIWVSHRPDHGFEGA MMEETSYGIRKDGS IKQRRKADGSAGREI SNLIRIHEATQPLRHGVSADGQPLAYKGYVGGSNY CIEITVNDKGKWEGEVI STFRAYGVVRAGGMGRLRNPHEGQNGRKLIMRLVIGDSVRLEVDGAE RTMRIVKI SGSNGQIFMAPIHEANVDARNTDKQDAFTYTSKYAGSLQKAKTRRVTI SPIGEVRD PGFKG
SEQ ID NO: 375
MARPAFRAPRREHVNGWTPDPHRI SKPFFILVSWHLLSRVVIDSSSGCFPGTSRDHTDKFAEWE CAVQPYRLSFDLGTNS IGWGLLNLDRQGKPREIRALGSRIFSDGRDPQDKASLAVARRLARQMR RRRDRYLTRRTRLMGALVRFGLMPADPAARKRLEVAVDPYLARERATRERLEPFEIGRALFHLN QRRGYKPVRTATKPDEEAGKVKEAVERLEAAIAAAGAPTLGAWFAWRKTRGETLRARLAGKGKE AAYPFYPARRMLEAEFDTLWAEQARHHPDLLTAEAREILRHRIFHQRPLKPPPVGRCTLYPDDG RAPRALPSAQRLRLFQELASLRVIHLDLSERPLTPAERDRIVAFVQGRPPKAGRKPGKVQKSVP FEKLRGLLELPPGTGFSLESDKRPELLGDETGARIAPAFGPGWTALPLEEQDALVELLLTEAEP ERAIAALTARWALDEATAAKLAGATLPDFHGRYGRRAVAELLPVLERETRGDPDGRVRPIRLDE AVKLLRGGKDHSDFSREGALLDALPYYGAVLERHVAFGTGNPADPEEKRVGRVANPTVHIALNQ LRHLVNAILARHGRPEEIVIELARDLKRSAEDRRREDKRQADNQKRNEERKRLILSLGERPTPR NLLKLRLWEEQGPVENRRCPYSGETI SMRMLLSEQVDIDHILPFSVSLDDSAANKVVCLREANR IKRNRSPWEAFGHDSERWAGILARAEALPKNKRWRFAPDALEKLEGEGGLRARHLNDTRHLSRL AVEYLRCVCPKVRVSPGRLTALLRRRWGIDAILAEADGPPPEVPAETLDPSPAEKNRADHRHHA LDAVVIGCIDRSMVQRVQLAAASAEREAAAREDNIRRVLEGFKEEPWDGFRAELERRARTIVVS HRPEHGIGGALHKETAYGPVDPPEEGFNLVVRKPIDGLSKDEINSVRDPRLRRALIDRLAIRRR DANDPATALAKAAEDLAAQPASRGIRRVRVLKKESNPIRVEHGGNPSGPRSGGPFHKLLLAGEV HHVDVALRADGRRWVGHWVTLFEAHGGRGADGAAAPPRLGDGERFLMRLHKGDCLKLEHKGRVR VMQVVKLEPSSNSVVVVEPHQVKTDRSKHVKI SCDQLRARGARRVTVDPLGRVRVHAPGARVGI GGDAGRTAMEPAEDIS SEQ ID NO: 376
MKRTSLRAYRLGVDLGANSLGWFVVWLDDHGQPEGLGPGGVRIFPDGRNPQSKQSNAAGRRLAR SARRRRDRYLQRRGKLMGLLVKHGLMPADEPARKRLECLDPYGLRAKALDEVLPLHHVGRALFH LNQRRGLFANRAIEQGDKDASAIKAAAGRLQTSMQACGARTLGEFLNRRHQLRATVRARSPVGG DVQARYEFYPTRAMVDAEFEAIWAAQAPHHPTMTAEAHDTIREAIFSQRAMKRPS IGKCSLDPA TSQDDVDGFRCAWSHPLAQRFRIWQDVRNLAVVETGPTSSRLGKEDQDKVARALLQTDQLSFDE IRGLLGLPSDARFNLESDRRDHLKGDATGAILSARRHFGPAWHDRSLDRQIDIVALLESALDEA AIIASLGTTHSLDEAAAQRALSALLPDGYCRLGLRAIKRVLPLMEAGRTYAEAASAAGYDHALL PGGKLSPTGYLPYYGQWLQNDVVGSDDERDTNERRWGRLPNPTVHIGIGQLRRVVNELIRWHGP PAEITVELTRDLKLSPRRLAELEREQAENQRKNDKRTSLLRKLGLPASTHNLLKLRLWDEQGDV ASECPYTGEAIGLERLVSDDVDIDHLIPFS I SWDDSAANKVVCMRYANREKGNRTPFEAFGHRQ GRPYDWADIAERAARLPRGKRWRFGPGARAQFEELGDFQARLLNETSWLARVAKQYLAAVTHPH RIHVLPGRLTALLRATWELNDLLPGSDDRAAKSRKDHRHHAIDALVAALTDQALLRRMANAHDD TRRKIEVLLPWPTFRIDLETRLKAMLVSHKPDHGLQARLHEDTAYGTVEHPETEDGANLVYRKT FVDI SEKEIDRIRDRRLRDLVRAHVAGERQQGKTLKAAVLSFAQRRDIAGHPNGIRHVRLTKS I KPDYLVPIRDKAGRIYKSYNAGENAFVDILQAESGRWIARATTVFQANQANESHDAPAAQPIMR VFKGDMLRIDHAGAEKFVKIVRLSPSNNLLYLVEHHQAGVFQTRHDDPEDSFRWLFASFDKLRE WNAELVRIDTLGQPWRRKRGLETGSEDATRIGWTRPKKWP
SEQ ID NO: 377
MERIFGFDIGTTS IGFSVIDYSSTQSAGNIQRLGVRIFPEARDPDGTPLNQQRRQKRMMRRQLR RRRIRRKALNETLHEAGFLPAYGSADWPVVMADEPYELRRRGLEEGLSAYEFGRAIYHLAQHRH FKGRELEESDTPDPDVDDEKEAANERAATLKALKNEQTTLGAWLARRPPSDRKRGIHAHRNVVA EEFERLWEVQSKFHPALKSEEMRARI SDTIFAQRPVFWRKNTLGECRFMPGEPLCPKGSWLSQQ RRMLEKLNNLAIAGGNARPLDAEERDAILSKLQQQASMSWPGVRSALKALYKQRGEPGAEKSLK FNLELGGESKLLGNALEAKLADMFGPDWPAHPRKQEIRHAVHERLWAADYGETPDKKRVI ILSE KDRKAHREAAANSFVADFGITGEQAAQLQALKLPTGWEPYS IPALNLFLAELEKGERFGALVNG PDWEGWRRTNFPHRNQPTGEILDKLPSPASKEERERI SQLRNPTVVRTQNELRKVVNNLIGLYG KPDRIRIEVGRDVGKSKREREEIQSGIRRNEKQRKKATEDLIKNGIANPSRDDVEKWILWKEGQ ERCPYTGDQIGFNALFREGRYEVEHIWPRSRSFDNSPRNKTLCRKDVNIEKGNRMPFEAFGHDE DRWSAIQIRLQGMVSAKGGTGMSPGKVKRFLAKTMPEDFAARQLNDTRYAAKQILAQLKRLWPD MGPEAPVKVEAVTGQVTAQLRKLWTLNNILADDGEKTRADHRHHAIDALTVACTHPGMTNKLSR YWQLRDDPRAEKPALTPPWDTIRADAEKAVSEIVVSHRVRKKVSGPLHKETTYGDTGTDIKTKS GTYRQFVTRKKIESLSKGELDEIRDPRIKEIVAAHVAGRGGDPKKAFPPYPCVSPGGPEIRKVR LTSKQQLNLMAQTGNGYADLGSNHHIAIYRLPDGKADFEIVSLFDASRRLAQRNPIVQRTRADG ASFVMSLAAGEAIMIPEGSKKGIWIVQGVWASGQVVLERDTDADHSTTTRPMPNPILKDDAKKV SIDPIGRVRPSND SEQ ID NO: 378
MNKRILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEGVKIEKGIESSKAAERSGYKAIR KQYFRRRLRKIQVLKVLVKYHLCPYLSDDDLRQWHLQKQYPKSDELMLWQRTSDEEGKNPYYDR HRCLHEKLDLTVEADRYTLGRALYHLTQRRGFLSNRLDTSADNKEDGVVKSGI SQLSTEMEEAG CEYLGDYFYKLYDAQGNKVRIRQRYTDRNKHYQHEFDAICEKQELSSELIEDLQRAIFFQLPLK SQRHGVGRCTFERGKPRCADSHPDYEEFRMLCFVNNIQVKGPHDLELRPLTYEEREKIEPLFFR KSKPNFDFEDIAKALAGKKNYAWIHDKEERAYKFNYRMTQGVPGCPTIAQLKS IFGDDWKTGIA ETYTLIQKKNGSKSLQEMVDDVWNVLYSFSSVEKLKEFAHHKLQLDEESAEKFAKIKLSHSFAA LSLKAIRKFLPFLRKGMYYTHASFFANIPTIVGKEIWNKEQNRKYIMENVGELVFNYQPKHREV QGTIEMLIKDFLANNFELPAGATDKLYHPSMIETYPNAQRNEFGILQLGSPRTNAIRNPMAMRS LHILRRVVNQLLKES I IDENTEVHVEYARELNDANKRRAIADRQKEQDKQHKKYGDEIRKLYKE ETGKDIEPTQTDVLKFQLWEEQNHHCLYTGEQIGITDFIGSNPKFDIEHTIPQSVGGDSTQMNL TLCDNRFNREVKKAKLPTELANHEEILTRIEPWKNKYEQLVKERDKQRTFAGMDKAVKDIRIQK RHKLQMEIDYWRGKYERFTMTEVPEGFSRRQGTGIGLI SRYAGLYLKSLFHQADSRNKSNVYVV KGVATAEFRKMWGLQSEYEKKCRDNHSHHCMDAITIACIGKREYDLMAEYYRMEETFKQGRGSK PKFSKPWATFTEDVL IYKNLLVVHDTPNNMPKHTKKYVQTS IGKVLAQGDTARGSLHLDTYYG AIERDGEIRYVVRRPLSSFTKPEELENIVDETVKRTIKEAIADKNFKQAIAEPIYMNEEKGILI KKVRCFAKSVKQPINIRQHRDLSKKEYKQQYHVMNENNYLLAIYEGLVKNKVVREFEIVSYIEA AKYYKRSQDRNIFSS IVPTHSTKYGLPLKTKLLMGQLVLMFEENPDEIQVDNTKDLVKRLYKVV GIEKDGRIKFKYHQEARKEGLPIFSTPYKNNDDYAPIFRQS INNINILVDGIDFTIDILGKVTL KE SEQ ID NO: 379
MNYKMGLDIGIASVGWAVINLDLKRIEDLGVRIFDKAEHPQNGESLALPRRIARSARRRLRRRK HRLERIRRLLVSENVLTKEEMNLLFKQKKQIDVWQLRVDALERKLNNDELARVLLHLAKRRGFK SNRKSERNSKESSEFLKNIEENQS ILAQYRSVGEMIVKDSKFAYHKRNKLDSYSNMIARDDLER EIKLIFEKQREFNNPVCTERLEEKYLNIWSSQRPFASKEDIEKKVGFCTFEPKEKRAPKATYTF QSFIVWEHINKLRLVSPDETRALTEIERNLLYKQAFSKNKMTYYDIRKLLNLSDDIHFKGLLYD PKSSLKQIENIRFLELDSYHKIRKCIENVYGKDGIRMFNETDIDTFGYALTIFKDDEDIVAYLQ NEYITKNGKRVSNLANKVYDKSLIDELLNLSFSKFAHLSMKAIR ILPYMEQGEIYSKACELAG YNFTGPKKKEKALLLPVIPNIANPVVMRALTQSRKVVNAI IKKYGSPVS IHIELARDLSHSFDE RKKIQKDQTENRKKNETAIKQLIEYELTKNPTGLDIVKFKLWSEQQGRCMYSLKPIELERLLEP GYVEVDHILPYSRSLDDSYANKVLVLTKENREKGNHTPVEYLGLGSERWKKFEKFVLANKQFSK KKKQNLLRLRYEETEEKEFKERNLNDTRYI SKFFANFIKEHLKFADGDGGQKVYTINGKITAHL RSRWDFNKNREESDLHHAVDAVIVACATQGMIKKITEFYKAREQNKESAKKKEPIFPQPWPHFA DELKARLSKFPQES IEAFALGNYDRKKLESLRPVFVSRMPKRSVTGAAHQETLRRCVGIDEQSG KIQTAVKTKLSDIKLDKDGHFPMYQKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGEP GPVIRTVKI IDTKNKVVHLDGSKTVAYNS IVRTDVFEKDGKYYCVPVYTMDIMKGTLPNKAIE ANKPYSEWKEMTEEYTFQFSLFPNDLVRIVLPREKTIKTSTNEEI I IKDIFAYYKTIDSATGGL ELI SHDRNFSLRGVGSKTLKRFEKYQVDVLG IHKVKGEKRVGLAAPTNQKKGKTVDSLQSVSD
SEQ ID NO: 380
MRRLGLDLGTNS IGWCLLDLGDDGEPVS IFRTGARIFSDGRDPKSLGSLKATRREARLTRRRRD RFIQRQKNLINALVKYGLMPADEIQRQALAYKDPYPIRKKALDEAIDPYEMGRAIFHINQRRGF KSNRKSADNEAGVVKQS IADLEMKLGEAGARTIGEFLADRQATNDTVRARRLSGTNALYEFYPD RYMLEQEFDTLWAKQAAFNPSLYIEAARERLKEIVFFQRKLKPQEVGRCIFLSDEDRI SKALPS FQRFRIYQELSNLAWIDHDGVAHRITASLALRDHLFDELEHKKKLTFKAMRAILRKQGVVDYPV GFNLESDNRDHLIGNLTSCIMRDAKKMIGSAWDRLDEEEQDSFILMLQDDQKGDDEVRS ILTQQ YGLSDDVAEDCLDVRLPDGHGSLSKKAIDRILPVLRDQGLIYYDAVKEAGLGEANLYDPYAALS DKLDYYGKALAGHVMGASGKFEDSDEKRYGTI SNPTVHIALNQVRAVVNELIRLHGKPDEVVIE IGRDLPMGADGKRELERFQKEGRAKNERARDELKKLGHIDSRESRQKFQLWEQLAKEPVDRCCP FTGKMMS I SDLFSDKVEIEHLLPFSLTLDDSMANKTVCFRQANRDKGNRAPFDAFGNSPAGYDW QEILGRSQNLPYAKRWRFLPDAMKRFEADGGFLERQLNDTRYI SRYTTEYI STI IPKNKIWVVT GRLTSLLRGFWGLNS ILRGHNTDDGTPAKKSRDDHRHHAIDAIVVGMTSRGLLQKVSKAARRSE DLDLTRLFEGRIDPWDGFRDEVKKHIDAI IVSHRPRKKSQGALHNDTAYGIVEHAENGASTVVH RVPITSLGKQSDIEKVRDPLIKSALLNETAGLSGKSFENAVQKWCADNS IKSLRIVETVS I IPI TDKEGVAYKGYKGDGNAYMDIYQDPTSSKWKGEIVSRFDANQKGFIPSWQSQFPTARLIMRLRI NDLLKLQDGEIEEIYRVQRLSGSKILMAPHTEANVDARDRDKNDTFKLTSKSPGKLQSASARKV HISPTGLIREG
SEQ ID NO: 381
MK ILGLDLGLSS IGWSVIRENSEEQELVAMGSRVVSLTAAELSSFTQGNGVS INSQRTQKRTQ RKGYDRYQLRRTLLRNKLDTLGMLPDDSLSYLPKLQLWGLRAKAVTQRIELNELGRVLLHLNQK RGYKS IKSDFSGDKKITDYVKTVKTRYDELKEMRLTIGELFFRRLTENAFFRCKEQVYPRQAYV EEFDCIMNCQRKFYPDILTDETIRCIRDEI IYYQRPLKSCKYLVSRCEFEKRFYLNAAGKKTEA GPKVSPRTSPLFQVCRLWES IN IVVKDRRNEIVFI SAEQRAALFDFLNTHEKLKGSDLLKLLG LSKTYGYRLGEQFKTGIQGNKTRVEIERALGNYPDKKRLLQFNLQEESSSMVNTETGEI IPMI S LSFEQEPLYRLWHVLYS IDDREQLQSVLRQKFGIDDDEVLERLSAIDLVKAGFGNKSSKAIRRI LPFLQLGMNYAEACEAAGYNHSNNYTKAENEARALLDRLPAIKKNELRQPVVEKILNQMVNVVN ALMEKYGRFDEIRVELARELKQSKEERSNTYKS INKNQRENEQIAKRIVEYGVPTRSRIQKYKM WEESKHCCIYCGQPVDVGDFLRGFDVEVEHI IPKSLYFDDSFANKVCSCRSCNKEKNNRTAYDY MKSKGEKALSDYVERVNTMYTNNQI SKTKWQNLLTPVDKI S IDFIDRQLRESQYIARKAKEILT SICYNVTATSGSVTSFLRHVWGWDTVLHDLNFDRYKKVGLTEVIEVNHRGSVIRREQIKDWSKR FDHRHHAIDALTIACTKQAYIQRLNNLRAEEGPDFNKMSLERYIQSQPHFSVAQVREAVDRILV SFRAGKRAVTPGKRYIRKNRKRI SVQSVLIPRGALSEESVYGVIHVWEKDEQGHVIQKQRAVMK YPITS INREMLDKEKVVDKRIHRILSGRLAQYNDNPKEAFAKPVYIDKECRIPIRTVRCFAKPA INTLVPLKKDDKGNPVAWVNPGNNHHVAIYRDEDGKYKERTVTFWEAVDRCRVGIPAIVTQPDT IWD ILQRNDI SENVLESLPDVKWQFVLSLQQNEMFILGMNEEDYRYAMDQQDYALLNKYLYRV QKLSKSDYSFRYHTETSVEDKYDGKPNLKLSMQMGKLKRVS IKSLLGLNPHKVHI SVLGEIKEI S
SEQ ID NO: 382
MAEKQHRWGLDIGTNS IGWAVIALIEGRPAGLVATGSRIFSDGRNPKDGSSLAVERRGPRQMRR RRDRYLRRRDRFMQALINVGLMPGDAAARKALVTENPYVLRQRGLDQALTLPEFGRALFHLNQR RGFQSNRKTDRATAKESGKVKNAIAAFRAGMGNARTVGEALARRLEDGRPVRARMVGQGKDEHY ELYIAREWIAQEFDALWASQQRFHAEVLADAARDRLRAILLFQRKLLPVPVGKCFLEPNQPRVA AALPSAQRFRLMQELNHLRVMTLADKRERPLSFQERNDLLAQLVARPKCGFDMLRKIVFGANKE AYRFTIESERRKELKGCDTAAKLAKVNALGTRWQALSLDEQDRLVCLLLDGENDAVLADALREH YGLTDAQIDTLLGLSFEDGHMRLGRSALLRVLDALESGRDEQGLPLSYDKAVVAAGYPAHTADL ENGERDALPYYGELLWRYTQDAPTAKNDAERKFGKIANPTVHIGLNQLRKLVNALIQRYGKPAQ IVVELARNLKAGLEEKERIKKQQTANLERNERIRQKLQDAGVPDNRENRLRMRLFEELGQGNGL GTPCIYSGRQI SLQRLFSNDVQVDHILPFSKTLDDSFANKVLAQHDANRYKGNRGPFEAFGANR DGYAWDDIRARAAVLPRNKRNRFAETAMQDWLHNETDFLARQLTDTAYLSRVARQYLTAICSKD DVYVSPGRLTAMLRAKWGLNRVLDGVMEEQGRPAVKNRDDHRHHAIDAVVIGATDRAMLQQVAT LAARAREQDAERLIGDMPTPWPNFLEDVRAAVARCVVSHKPDHGPEGGLHNDTAYGIVAGPFED GRYRVRHRVSLFDLKPGDLSNVRCDAPLQAELEPIFEQDDARAREVALTALAERYRQRKVWLEE LMSVLPIRPRGEDGKTLPDSAPYKAYKGDSNYCYELFINERGRWDGELI STFRANQAAYRRFRN DPARFRRYTAGGRPLLMRLCINDYIAVGTAAERTIFRVVKMSENKITLAEHFEGGTLKQRDADK DDPFKYLTKSPGALRDLGARRIFVDLIGRVLDPGIKGD
SEQ ID NO: 383 MIERILGVDLGI SSLGWAIVEYDKDDEAANRI IDCGVRLFTAAETPKKKESPNKARREARGIRR VLNRRRVRMNMIKKLFLRAGLIQDVDLDGEGGMFYSKANRADVWELRHDGLYRLLKGDELARVL IHIAKHRGYKFIGDDEADEESGKVKKAGVVLRQNFEAAGCRTVGEWLWRERGANGKKRNKHGDY EI S IHRDLLVEEVEAIFVAQQEMRSTIATDALKAAYREIAFFVRPMQRIEKMVGHCTYFPEERR APKSAPTAEKFIAI SKFFSTVI IDNEGWEQKI IERKTLEELLDFAVSREKVEFRHLRKFLDLSD NEIFKGLHYKGKPKTAKKREATLFDPNEPTELEFDKVEAEKKAWI SLRGAAKLREALGNEFYGR FVALGKHADEATKILTYYKDEGQKRRELTKLPLEAEMVERLVKIGFSDFLKLSLKAIRDILPAM ESGARYDEAVLMLGVPHKEKSAILPPLNKTDIDILNPTVIRAFAQFRKVANALVRKYGAFDRVH FELAREINTKGEIEDIKESQRKNEKERKEAADWIAETSFQVPLTRKNILKKRLYIQQDGRCAYT GDVIELERLFDEGYCEIDHILPRSRSADDSFANKVLCLARANQQKTDRTPYEWFGHDAARWNAF ETRTSAPSNRVRTGKGKIDRLLKKNFDENSEMAFKDRNLNDTRYMARAIKTYCEQYWVFKNSHT KAPVQVRSGKLTSVLRYQWGLESKDRESHTHHAVDAI I IAFSTQGMVQKLSEYYRFKETHREKE RPKLAVPLANFRDAVEEATRIENTETVKEGVEVKRLLI SRPPRARVTGQAHEQTAKPYPRIKQV KNKKKWRLAPIDEEKFESFKADRVASANQKNFYETSTIPRVDVYHKKGKFHLVPIYLHEMVLNE LPNLSLGTNPEAMDENFFKFS IFKDDLI S IQTQGTPKKPAKI IMGYFKNMHGANMVLSS INNSP CEGFTCTPVSMDKKHKDKCKLCPEENRIAGRCLQGFLDYWSQEGLRPPRKEFECDQGVKFALDV KKYQIDPLGYYYEVKQEKRLGTIPQMRSAKKLVKK
SEQ ID NO: 384
MNNS IKSKPEVTIGLDLGVGSVGWAIVDNET I IHHLGSRLFSQAKTAEDRRSFRGVRRLIRRR KYKLKRFVNLIWKYNSYFGFKNKEDILNNYQEQQKLHNTVLNLKSEALNAKIDPKALSWILHDY LKNRGHFYEDNRDFNVYPTKELAKYFDKYGYYKGI IDSKEDNDNKLEEELTKYKFSNKHWLEEV KKVLSNQTGLPEKFKEEYESLFSYVRNYSEGPGS INSVSPYGIYHLDEKEGKVVQKYN IWDKT IGKCNIFPDEYRAPKNSPIAMIFNEINELSTIRSYS IYLTGWFINQEFKKAYLNKLLDLLIKTN GEKPIDARQFKKLREETIAES IGKETLKDVENEEKLEKEDHKWKLKGLKLNTNGKIQYNDLSSL AKFVHKLKQHLKLDFLLEDQYATLDKINFLQSLFVYLGKHLRYSNRVDSANLKEFSDSNKLFER ILQKQKDGLFKLFEQTDKDDEKILAQTHSLSTKAMLLAITRMTNLDNDEDNQKNNDKGWNFEAI KNFDQKFIDITKKNNNLSLKQNKRYLDDRFINDAILSPGVKRILREATKVFNAILKQFSEEYDV TKVVIELARELSEEKELENTKNYKKLIKKNGDKI SEGLKALGI SEDEIKDILKSPTKSYKFLLW LQQDHIDPYSLKEIAFDDIFTKTEKFEIDHI IPYS I SFDDSSSNKLLVLAESNQAKSNQTPYEF ISSGNAGIKWEDYEAYCRKFKDGDSSLLDSTQRSKKFAKMMKTDTSSKYDIGFLARNLNDTRYA TIVFRDALEDYANNHLVEDKPMFKVVCINGSVTSFLRKNFDDSSYAKKDRDK IHHAVDAS IIS IFSNETKTLFNQLTQFADYKLFKNTDGSWKKIDPKTGVVTEVTDENWKQIRVRNQVSEIAKVIE KYIQDS IERKARYSRKIENKT I SLFNDTVYSAKKVGYEDQIKRKNLKTLDIHESAKENKNSK VKRQFVYRKLVNVSLLNNDKLADLFAEKEDILMYRANPWVINLAEQIFNEYTENKKIKSQNVFE KYMLDLTKEFPEKFSEFLVKSMLRNKTAI IYDDKK IVHRIKRLKMLSSELKENKLSNVI IRSK NQSGTKLSYQDTINSLALMIMRS IDPTAKKQYIRVPLNTLNLHLGDHDFDLHNMDAYLKKPKFV KYLKANEIGDEYKPWRVLTSGTLLIHKKDKKLMYISSFQNLNDVIEIKNLIETEYKENDDSDSK KKKKANRFLMTLSTILNDYILLDAKDNFDILGLSKNRIDEILNSKLGLDKIVK
SEQ ID NO: 385
MGGSEVGTVPVTWRLGVDVGERS IGLAAVSYEEDKPKEILAAVSWIHDGGVGDERSGASRLALR GMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDAWLARKRLAEEYVVDETERRRLL GYAVSHMARHRGWRNPWTTIKDLKNLPQPSDSWERTRESLEARYSVSLEPGTVGQWAGYLLQRA PGIRLNPTQQSAGRRAELSNATAFETRLRQEDVLWELRCIADVQGLPEDVVSNVIDAVFCQKRP SVPAERIGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEERNAVIEALLAQ TERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAPFDETSARIAEFIAKNRRKIPTF AQWWQEQDRTSRSDLVAALADNS IAGEEEQELLVHLPDAELEALEGLALPSGRVAYSRLTLSGL TRVMRDDGVDVHNARKTCFGVDDNWRPPLPALHEATGHPVVDRNLAILRKFLSSATMRWGPPQS IVVELARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPSPADLVRARLLELYDCHCM YCGAPI SWENSELDHIVPRTDGGSNRHENLAITCGACNKEKGRRPFASWAETSNRVQLRDVIDR VQKLKYSGNMYWTRDEFSRYKKSVVARLKRRTSDPEVIQS IESTGYAAVALRDRLLSYGEKNGV AQVAVFRGGVTAEARRWLDI S IERLFSRVAIFAQSTSTKRLDRRHHAVDAVVLTTLTPGVAKTL ADARSRRVSAEFWRRPSDVNRHSTEEPQSPAYRQWKESCSGLGDLLI STAARDS IAVAAPLRLR PTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVYAAFLALTDPGGRFLKVSPSEDVLPADEN RHIVLSDRVLGPRDRVKLFPDDRGS IRVRGGAAYIASFHHARVFRWGSSHSPSFALLRVSLADL AVAGLLRDGVDVFTAELPPWTPAWRYAS IALVKAVESGDAKQVGWLVPGDELDFGPEGVTTAAG DLSMFLKYFPERHWVVTGFEDDKRINLKPAFLSAEQAEVLRTERSDRPDTLTEAGEILAQFFPR CWRATVAKVLCHPGLTVIRRTALGQPRWRRGHLPYSWRPWSADPWSGGTP
SEQ ID NO: 386
MHNKKNITIGFDLGIAS IGWAI IDSTTSKILDWGTRTFEERKTANERRAFRSTRRNIRRKAYRN QRFINLILKYKDLFELKNI SDIQRANKKDTENYEKI I SFFTEIYKKCAAKHS ILEVKVKALDS KIEKLDLIWILHDYLENRGFFYDLEEENVADKYEGIEHPS ILLYDFFKKNGFFKSNSS IPKDLG GYSFSNLQWVNEIKKLFEVQEINPEFSEKFLNLFTSVRDYAKGPGSEHSASEYGIFQKDEKGKV FKKYDNIWDKTIGKCSFFVEENRSPVNYPSYEIFNLLNQLINLSTDLKTTNKKIWQLSSNDRNE LLDELLKVKEKAKI I S I SLKKNEIKKI ILKDFGFEKSDIDDQDTIEGRKI IKEEPTTKLEVTKH LLATIYSHSSDSNWININNILEFLPYLDAICI ILDREKSRGQDEVLKKLTEKNIFEVLKIDREK QLDFVKS IFSNTKFNFKKIGNFSLKAIREFLPKMFEQNKNSEYLKWKDEEIRRKWEEQKSKLGK TDKKTKYLNPRIFQDEI I SPGTKNTFEQAVLVLNQI IKKYSKENI IDAI I IESPREKNDKKTIE EIKKRNKKGKGKTLEKLFQILNLENKGYKLSDLETKPAKLLDRLRFYHQQDGIDLYTLDKINID QLINGSQKYEIEHI IPYSMSYDNSQANKILTEKAENLKKGKLIASEYIKRNGDEFYNKYYEKAK ELFINKYKKNKKLDSYVDLDEDSAKNRFRFLTLQDYDEFQVEFLARNLNDTRYSTKLFYHALVE HFENNEFFTYIDENSSKHKVKI STIKGHVTKYFRAKPVQKNNGPNENLNNNKPEKIEKNRENNE HHAVDAAIVAI IGNKNPQIANLLTLADNKTDKKFLLHDENYKE IETGELVKIPKFEVDKLAKV EDLKKI IQEKYEEAKKHTAIKFSRKTRTILNGGLSDETLYGFKYDEKEDKYFKI IKKKLVTSKN EELKKYFENPFGKKADGKSEYTVLMAQSHLSEFNKLKEIFEKYNGFSNKTGNAFVEYMNDLALK EPTLKAEIESAKSVEKLLYYNFKPSDQFTYHDNINNKSFKRFYKNIRI IEYKS IPIKFKILSKH DGGKSFKDTLFSLYSLVYKVYENGKESYKS IPVTSQMRNFGIDEFDFLDENLYNKEKLDIYKSD FAKPIPVNCKPVFVLKKGS ILKKKSLDIDDFKETKETEEGNYYFI STI SKRFNRDTAYGLKPLK LSVVKPVAEPSTNPIFKEYIPIHLDELGNEYPVKIKEHTDDEKLMCTIK
Nucleic Acids Encoding Cas9 Molecules
Nucleic acids encoding the Cas9 molecules or Cas9 polypeptides, e.g., an eaCas9 molecule or eaCas9 polypeptides are provided herein.
Exemplary nucleic acids encoding Cas9 molecules or Cas9 polypeptides are described in Cong et al., SCIENCE 2013, 399(6121):819-823; Wang et al., CELL 2013, 153(4):910-918; Mali et al., SCIENCE 2013, 399(6121):823-826; Jinek et al., SCIENCE 2012, 337(6096):816-821. Another exemplary nucleic acid encoding a Cas9 molecule or Cas9 polypeptide is shown in Fig. 8. In an embodiment, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide can be a synthetic nucleic acid sequence. For example, the synthetic nucleic acid molecule can be chemically modified, e.g., as described in Section VIII. In an embodiment, the Cas9 mRNA has one or more (e.g., all of the following properties: it is capped, polyadenylated, substituted with 5- methylcytidine and/or pseudouridine.
In addition, or alternatively, the synthetic nucleic acid sequence can be codon optimized, e.g., at least one non-common codon or less-common codon has been replaced by a common codon. For example, the synthetic nucleic acid can direct the synthesis of an optimized messenger mRNA, e.g., optimized for expression in a mammalian expression system, e.g., described herein.
In addition, or alternatively, a nucleic acid encoding a Cas9 molecule or Cas9
polypeptide may comprise a nuclear localization sequence (NLS). Nuclear localization sequences are known in the art. Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. pyogenes.
ATGGATAAAA AGTACAGCAT CGGGCTGGAC ATCGGTACAA ACTCAGTGGG GTGGGCCGTG ATTACGGACG AGTACAAGGT ACCCTCCAAA AAATTTAAAG TGCTGGGTAA CACGGACAGA CACTCTATAA AGAAAAATCT TATTGGAGCC TTGCTGTTCG ACTCAGGCGA GACAGCCGAA GCCACAAGGT TGAAGCGGAC CGCCAGGAGG CGGTATACCA GGAGAAAGAA CCGCATATGC TACCTGCAAG AAATCTTCAG TAACGAGATG GCAAAGGTTG ACGATAGCTT TTTCCATCGC CTGGAAGAAT CCTTTCTTGT TGAGGAAGAC AAGAAGCACG AACGGCACCC CATCTTTGGC AATATTGTCG ACGAAGTGGC ATATCACGAA AAGTACCCGA CTATCTACCA CCTCAGGAAG AAGCTGGTGG ACTCTACCGA TAAGGCGGAC CTCAGACTTA TTTATTTGGC ACTCGCCCAC AT GAT T AAA T TTAGAGGACA TTTCTTGATC GAGGGCGACC TGAACCCGGA CAACAGTGAC GTCGATAAGC TGTTCATCCA ACTTGTGCAG ACCTACAATC AACTGTTCGA AGAAAACCCT ATAAATGCTT CAGGAGTCGA CGCTAAAGCA ATCCTGTCCG CGCGCCTCTC AAAATCTAGA AGACTTGAGA ATCTGATTGC TCAGTTGCCC GGGGAAAAGA AAAATGGATT GTTTGGCAAC CTGATCGCCC TCAGTCTCGG ACTGACCCCA AATTTCAAAA GTAACTTCGA CCTGGCCGAA GACGCTAAGC TCCAGCTGTC CAAGGACACA TACGATGACG ACCTCGACAA TCTGCTGGCC CAGATTGGGG ATCAGTACGC CGATCTCTTT TTGGCAGCAA AGAACCTGTC CGACGCCATC CTGTTGAGCG ATATCTTGAG AGTGAACACC GAAATTACTA AAGCACCCCT TAGCGCATCT ATGATCAAGC GGTACGACGA GCATCATCAG GATCTGACCC TGCTGAAGGC TCTTGTGAGG CAACAGCTCC CCGAAAAATA CAAGGAAATC TTCTTTGACC AGAGCAAAAA CGGCTACGCT GGCTATATAG ATGGTGGGGC CAGTCAGGAG GAATTCTATA AATTCATCAA GCCCATTCTC GAGAAAATGG ACGGCACAGA GGAGTTGCTG GTCAAACTTA ACAGGGAGGA CCTGCTGCGG AAGCAGCGGA CCTTTGACAA CGGGTCTATC CCCCACCAGA TTCATCTGGG CGAACTGCAC GCAATCCTGA GGAGGCAGGA GGATTTTTAT CCTTTTCTTA AAGATAACCG CGAGAAAATA GAAAAGATTC TTACATTCAG GATCCCGTAC TACGTGGGAC CTCTCGCCCG GGGCAATTCA CGGTTTGCCT GGATGACAAG GAAGTCAGAG GAGACTATTA CACCTTGGAA CTTCGAAGAA GTGGTGGACA AGGGTGCATC TGCCCAGTCT TTCATCGAGC GGATGACAAA TTTTGACAAG AACCTCCCTA ATGAGAAGGT GCTGCCCAAA CATTCTCTGC TCTACGAGTA CTTTACCGTC TACAATGAAC TGACTAAAGT CAAGTACGTC ACCGAGGGAA TGAGGAAGCC GGCATTCCTT AGTGGAGAAC AGAAGAAGGC GATTGTAGAC CTGTTGTTCA AGACCAACAG GAAGGTGACT GTGAAGCAAC TTAAAGAAGA CTACTTTAAG AAGATCGAAT GTTTTGACAG TGTGGAAATT TCAGGGGTTG AAGACCGCTT CAATGCGTCA TTGGGGACTT ACCATGATCT TCTCAAGATC ATAAAGGACA AAGACTTCCT GGACAACGAA GAAAATGAGG ATATTCTCGA AGACATCGTC CTCACCCTGA CCCTGTTCGA AGACAGGGAA ATGATAGAAG AGCGCTTGAA AACCTATGCC CACCTCTTCG ACGATAAAGT TATGAAGCAG CTGAAGCGCA GGAGATACAC AGGATGGGGA AGATTGTCAA GGAAGCTGAT CAATGGAATT AGGGATAAAC AGAGTGGCAA GACCATACTG GATTTCCTCA AATCTGATGG CTTCGCCAAT AGGAACTTCA TGCAACTGAT TCACGATGAC TCTCTTACCT TCAAGGAGGA CATTCAAAAG GCTCAGGTGA GCGGGCAGGG AGACTCCCTT CATGAACACA TCGCGAATTT GGCAGGTTCC CCCGCTATTA AAAAGGGCAT CCTTCAAACT GTCAAGGTGG TGGATGAATT GGTCAAGGTA ATGGGCAGAC ATAAGCCAGA AAATATTGTG ATCGAGATGG CCCGCGAAAA CCAGACCACA CAGAAGGGCC AGAAAAATAG TAGAGAGCGG ATGAAGAGGA TCGAGGAGGG CATCAAAGAG CTGGGATCTC AGATTCTCAA AGAACACCCC GTAGAAAACA CACAGCTGCA GAACGAAAAA TTGTACTTGT ACTATCTGCA GAACGGCAGA GACATGTACG TCGACCAAGA ACTTGATATT AATAGACTGT CCGACTATGA CGTAGACCAT ATCGTGCCCC AGTCCTTCCT GAAGGACGAC TCCATTGATA ACAAAGTCTT GACAAGAAGC GACAAGAACA GGGGTAAAAG TGATAATGTG CCTAGCGAGG AGGTGGTGAA AAAAATGAAG AACTACTGGC GACAGCTGCT TAATGCAAAG CTCATTACAC AACGGAAGTT CGATAATCTG ACGAAAGCAG AGAGAGGTGG CTTGTCTGAG TTGGACAAGG CAGGGTTTAT TAAGCGGCAG CTGGTGGAAA CTAGGCAGAT CACAAAGCAC GTGGCGCAGA TTTTGGACAG CCGGATGAAC ACAAAATACG ACGAAAATGA TAAACTGATA CGAGAGGTCA AAGTTATCAC GCTGAAAAGC AAGCTGGTGT CCGATTTTCG GAAAGACTTC CAGTTCTACA AAGTTCGCGA GATTAATAAC TACCATCATG CTCACGATGC GTACCTGAAC GCTGTTGTCG GGACCGCCTT GATAAAGAAG TACCCAAAGC TGGAATCCGA GTTCGTATAC GGGGATTACA AAGTGTACGA TGTGAGGAAA ATGATAGCCA AGTCCGAGCA GGAGATTGGA AAGGCCACAG CTAAGTACTT CTTTTATTCT AACATCATGA ATTTTTTTAA GACGGAAATT ACCCTGGCCA ACGGAGAGAT CAGAAAGCGG CCCCTTATAG AGACAAATGG TGAAACAGGT GAAATCGTCT GGGATAAGGG CAGGGATTTC GCTACTGTGA GGAAGGTGCT GAGTATGCCA CAGGTAAATA TCGTGAAAAA AACCGAAGTA CAGACCGGAG GATTTTCCAA GGAAAGCATT TTGCCTAAAA GAAACTCAGA CAAGCTCATC GCCCGCAAGA AAGATTGGGA CCCTAAGAAA TACGGGGGAT TTGACTCACC CACCGTAGCC TATTCTGTGC TGGTGGTAGC TAAGGTGGAA AAAGGAAAGT CTAAGAAGCT GAAGTCCGTG AAGGAACTCT TGGGAATCAC TATCATGGAA AGATCATCCT TTGAAAAGAA CCCTATCGAT TTCCTGGAGG CTAAGGGTTA CAAGGAGGTC AAGAAAGACC TCATCATTAA ACTGCCAAAA TACTCTCTCT TCGAGCTGGA AAATGGCAGG AAGAGAATGT TGGCCAGCGC CGGAGAGCTG CAAAAGGGAA ACGAGCTTGC TCTGCCCTCC AAATATGTTA ATTTTCTCTA TCTCGCTTCC CACTATGAAA AGCTGAAAGG GTCTCCCGAA GATAACGAGC AGAAGCAGCT GTTCGTCGAA CAGCACAAGC ACTATCTGGA TGAAATAATC GAACAAATAA GCGAGTTCAG CAAAAGGGTT ATCCTGGCGG ATGCTAATTT GGACAAAGTA CTGTCTGCTT ATAACAAGCA CCGGGATAAG CCTATTAGGG AACAAGCCGA GAATATAATT CACCTCTTTA CACTCACGAA TCTCGGAGCC CCCGCCGCCT TCAAATACTT TGATACGACT ATCGACCGGA AACGGTATAC CAGTACCAAA GAGGTCCTCG ATGCCACCCT CATCCACCAG TCAATTACTG GCCTGTACGA AACACGGATC GACCTCTCTC AACTGGGCGG CGACTAG
(SEQ ID NO: 22)
Provided below is the corresponding amino acid sequence of a S. pyogenes Cas9 molecule.
MDKKYS IGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHS IKKNLIGALLFDSGETAEATRL KRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAY HEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTY NQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNF DLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMD GTEELLVKLNREDLLRKQRTFDNGS IPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRI PYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHS LLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEI SGVEDRFNASLGTYHDLLKI IKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTF KEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQ TTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINR LSDYDVDHIVPQSFLKDDS IDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRK FDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAK SEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLS MPQV IVKKTEVQTGGFSKES ILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKG KSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLI IKLPKYSLFELENGRKRMLAS AGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEI IEQI SEFSKRV ILADANLDKVLSAYNKHRDKPIREQAE I IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQS ITGLYETRIDLSQLGGD*
(SEQ ID NO: 23)
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of N. meningitidis. ATGGCCGCCT TCAAGCCCAACCCCATCAACTACATCCTGGGCCTGGACATCGGCATCGCCAGCG TGGGCTGGGCCATGGTGGAGATCGACGAGGACGAGAACCCCATCTGCCTGATCGACCTGGGTGT GCGCGTGT TCGAGCGCGCTGAGGTGCCCAAGACTGGTGACAGTCTGGCTATGGCTCGCCGGCT T GCTCGCTCTGT TCGGCGCCT TACTCGCCGGCGCGCTCACCGCCT TCTGCGCGCTCGCCGCCTGC TGAAGCGCGAGGGTGTGCTGCAGGCTGCCGACT TCGACGAGAACGGCCTGATCAAGAGCCTGCC CAACACTCCT TGGCAGCTGCGCGCTGCCGCTCTGGACCGCAAGCTGACTCCTCTGGAGTGGAGC GCCGTGCTGCTGCACCTGATCAAGCACCGCGGCTACCTGAGCCAGCGCAAGAACGAGGGCGAGA CCGCCGACAAGGAGCTGGGTGCTCTGCTGAAGGGCGTGGCCGACAACGCCCACGCCCTGCAGAC TGGTGACT TCCGCACTCCTGCTGAGCTGGCCCTGAACAAGT TCGAGAAGGAGAGCGGCCACATC CGCAACCAGCGCGGCGACTACAGCCACACCT TCAGCCGCAAGGACCTGCAGGCCGAGCTGATCC TGCTGT TCGAGAAGCAGAAGGAGT TCGGCAACCCCCACGTGAGCGGCGGCCTGAAGGAGGGCAT CGAGACCCTGCTGATGACCCAGCGCCCCGCCCTGAGCGGCGACGCCGTGCAGAAGATGCTGGGC CACTGCACCT TCGAGCCAGCCGAGCCCAAGGCCGCCAAGAACACCTACACCGCCGAGCGCT TCA TCTGGCTGACCAAGCTGAACAACCTGCGCATCCTGGAGCAGGGCAGCGAGCGCCCCCTGACCGA CACCGAGCGCGCCACCCTGATGGACGAGCCCTACCGCAAGAGCAAGCTGACCTACGCCCAGGCC CGCAAGCTGCTGGGTCTGGAGGACACCGCCT TCT TCAAGGGCCTGCGCTACGGCAAGGACAACG CCGAGGCCAGCACCCTGATGGAGATGAAGGCCTACCACGCCATCAGCCGCGCCCTGGAGAAGGA GGGCCTGAAGGACAAGAAGAGTCCTCTGAACCTGAGCCCCGAGCTGCAGGACGAGATCGGCACC GCCT TCAGCCTGT TCAAGACCGACGAGGACATCACCGGCCGCCTGAAGGACCGCATCCAGCCCG AGATCCTGGAGGCCCTGCTGAAGCACATCAGCT TCGACAAGT TCGTGCAGATCAGCCTGAAGGC CCTGCGCCGCATCGTGCCCCTGATGGAGCAGGGCAAGCGCTACGACGAGGCCTGCGCCGAGATC TACGGCGACCACTACGGCAAGAAGAACACCGAGGAGAAGATCTACCTGCCTCCTATCCCCGCCG ACGAGATCCGCAACCCCGTGGTGCTGCGCGCCCTGAGCCAGGCCCGCAAGGTGATCAACGGCGT GGTGCGCCGCTACGGCAGCCCCGCCCGCATCCACATCGAGACCGCCCGCGAGGTGGGCAAGAGC T TCAAGGACCGCAAGGAGATCGAGAAGCGCCAGGAGGAGAACCGCAAGGACCGCGAGAAGGCCG CCGCCAAGT TCCGCGAGTACT TCCCCAACT TCGTGGGCGAGCCCAAGAGCAAGGACATCCTGAA GCTGCGCCTGTACGAGCAGCAGCACGGCAAGTGCCTGTACAGCGGCAAGGAGATCAACCTGGGC CGCCTGAACGAGAAGGGCTACGTGGAGATCGACCACGCCCTGCCCT TCAGCCGCACCTGGGACG ACAGCT TCAACAACAAGGTGCTGGTGCTGGGCAGCGAGAACCAGAACAAGGGCAACCAGACCCC CTACGAGTACT TCAACGGCAAGGACAACAGCCGCGAGTGGCAGGAGT TCAAGGCCCGCGTGGAG ACCAGCCGCT TCCCCCGCAGCAAGAAGCAGCGCATCCTGCTGCAGAAGT TCGACGAGGACGGCT TCAAGGAGCGCAACCTGAACGACACCCGCTACGTGAACCGCT TCCTGTGCCAGT TCGTGGCCGA CCGCATGCGCCTGACCGGCAAGGGCAAGAAGCGCGTGT TCGCCAGCAACGGCCAGATCACCAAC CTGCTGCGCGGCT TCTGGGGCCTGCGCAAGGTGCGCGCCGAGAACGACCGCCACCACGCCCTGG ACGCCGTGGTGGTGGCCTGCAGCACCGTGGCCATGCAGCAGAAGATCACCCGCT TCGTGCGCTA CAAGGAGATGAACGCCT TCGACGGTAAAACCATCGACAAGGAGACCGGCGAGGTGCTGCACCAG AAGACCCACT TCCCCCAGCCCTGGGAGT TCT TCGCCCAGGAGGTGATGATCCGCGTGT TCGGCA AGCCCGACGGCAAGCCCGAGT TCGAGGAGGCCGACACCCCCGAGAAGCTGCGCACCCTGCTGGC CGAGAAGCTGAGCAGCCGCCCTGAGGCCGTGCACGAGTACGTGACTCCTCTGT TCGTGAGCCGC GCCCCCAACCGCAAGATGAGCGGTCAGGGTCACATGGAGACCGTGAAGAGCGCCAAGCGCCTGG ACGAGGGCGTGAGCGTGCTGCGCGTGCCCCTGACCCAGCTGAAGCTGAAGGACCTGGAGAAGAT GGTGAACCGCGAGCGCGAGCCCAAGCTGTACGAGGCCCTGAAGGCCCGCCTGGAGGCCCACAAG GACGACCCCGCCAAGGCCT TCGCCGAGCCCT TCTACAAGTACGACAAGGCCGGCAACCGCACCC AGCAGGTGAAGGCCGTGCGCGTGGAGCAGGTGCAGAAGACCGGCGTGTGGGTGCGCAACCACAA CGGCATCGCCGACAACGCCACCATGGTGCGCGTGGACGTGT TCGAGAAGGGCGACAAGTACTAC CTGGTGCCCATCTACAGCTGGCAGGTGGCCAAGGGCATCCTGCCCGACCGCGCCGTGGTGCAGG GCAAGGACGAGGAGGACTGGCAGCTGATCGACGACAGCT TCAACT TCAAGT TCAGCCTGCACCC CAACGACCTGGTGGAGGTGATCACCAAGAAGGCCCGCATGTTCGGCTACTTCGCCAGCTGCCAC CGCGGCACCGGCAACATCAACATCCGCATCCACGACCTGGACCACAAGATCGGCAAGAACGGCA TCCTGGAGGGCATCGGCGTGAAGACCGCCCTGAGCTTCCAGAAGTACCAGATCGACGAGCTGGG CAAGGAGATCCGCCCCTGCCGCCTGAAGAAGCGCCCTCCTGTGCGCTAA
(SEQ ID NO: 24)
Provided below is the corresponding amino acid sequence of a N. meningitidis Cas9 molecule.
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMARRL ARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWS AVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFEKESGHI RNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLG HCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQA RKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAI SRALEKEGLKDKKSPLNLSPELQDEIGT AFSLFKTDEDITGRLKDRIQPEILEALLKHI SFDKFVQI SLKALRRIVPLMEQGKRYDEACAEI YGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKS FKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLG RLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVE TSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITN LLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQ KTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSR APNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHK DDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYY LVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCH RGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR* (SEQ ID NO: 25)
Provided below is an amino acid sequence of a S. aureus Cas9 molecule.
MKRNYILGLDIGITSVGYGI IDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRI QRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDT GNELSTKEQI SRNSKALEEKYVAELQLERLKKDGEVRGS INRFKTSDYVKEAKQLLKVQKAYHQ LDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLY NALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGK PEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQIS NLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSP VVKRSFIQS IKVINAI IKKYGLPNDI I IELAREKNSKDAQKMINEMQKRNRQTNERIEEI IRTT GKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVK QEENSKKGNRTPFQYLSSSDSKI SYETFKKHILNLAKGKGRI SKTKKEYLLEERDINRFSVQKD FINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKS INGGFTSFLRRKWKFKKERNKGYKHHAED ALI IANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKD YKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHH DPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDD YPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKI SNQA EFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRI IKTIASKT QS IKKYSTDILGNLYEVKSKKHPQI IKKG*
(SEQ ID NO: 26) Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. aureus Cas9.
ATGAAAAGGAACTACATTCTGGGGCTGGACATCGGGATTACAAGCGTGGGGTATGGGATTATTG ACTATGAAACAAGGGACGTGATCGACGCAGGCGTCAGACTGTTCAAGGAGGCCAACGTGGAAAA CAATGAGGGACGGAGAAGCAAGAGGGGAGCCAGGCGCCTGAAACGACGGAGAAGGCACAGAATC CAGAGGGTGAAGAAACTGCTGTTCGATTACAACCTGCTGACCGACCATTCTGAGCTGAGTGGAA TTAATCCTTATGAAGCCAGGGTGAAAGGCCTGAGTCAGAAGCTGTCAGAGGAAGAGTTTTCCGC AGCTCTGCTGCACCTGGCTAAGCGCCGAGGAGTGCATAACGTCAATGAGGTGGAAGAGGACACC GGCAACGAGCTGTCTACAAAGGAACAGATCTCACGCAATAGCAAAGCTCTGGAAGAGAAGTATG TCGCAGAGCTGCAGCTGGAACGGCTGAAGAAAGATGGCGAGGTGAGAGGGTCAATTAATAGGTT CAAGACAAGCGACTACGTCAAAGAAGCCAAGCAGCTGCTGAAAGTGCAGAAGGCTTACCACCAG CTGGATCAGAGCTTCATCGATACTTATATCGACCTGCTGGAGACTCGGAGAACCTACTATGAGG GACCAGGAGAAGGGAGCCCCTTCGGATGGAAAGACATCAAGGAATGGTACGAGATGCTGATGGG ACATTGCACCTATTTTCCAGAAGAGCTGAGAAGCGTCAAGTACGCTTATAACGCAGATCTGTAC AACGCCCTGAATGACCTGAACAACCTGGTCATCACCAGGGATGAAAACGAGAAACTGGAATACT ATGAGAAGTTCCAGATCATCGAAAACGTGTTTAAGCAGAAGAAAAAGCCTACACTGAAACAGAT TGCTAAGGAGATCCTGGTCAACGAAGAGGACATCAAGGGCTACCGGGTGACAAGCACTGGAAAA CCAGAGTTCACCAATCTGAAAGTGTATCACGATATTAAGGACATCACAGCACGGAAAGAAATCA TTGAGAACGCCGAACTGCTGGATCAGATTGCTAAGATCCTGACTATCTACCAGAGCTCCGAGGA CATCCAGGAAGAGCTGACTAACCTGAACAGCGAGCTGACCCAGGAAGAGATCGAACAGATTAGT AATCTGAAGGGGTACACCGGAACACACAACCTGTCCCTGAAAGCTATCAATCTGATTCTGGATG AGCTGTGGCATACAAACGACAATCAGATTGCAATCTTTAACCGGCTGAAGCTGGTCCCAAAAAA GGTGGACCTGAGTCAGCAGAAAGAGATCCCAACCACACTGGTGGACGATTTCATTCTGTCACCC GTGGTCAAGCGGAGCTTCATCCAGAGCATCAAAGTGATCAACGCCATCATCAAGAAGTACGGCC TGCCCAATGATATCATTATCGAGCTGGCTAGGGAGAAGAACAGCAAGGACGCACAGAAGATGAT CAATGAGATGCAGAAACGAAACCGGCAGACCAATGAACGCATTGAAGAGATTATCCGAACTACC GGGAAAGAGAACGCAAAGTACCTGATTGAAAAAATCAAGCTGCACGATATGCAGGAGGGAAAGT GTCTGTATTCTCTGGAGGCCATCCCCCTGGAGGACCTGCTGAACAATCCATTCAACTACGAGGT CGATCATATTATCCCCAGAAGCGTGTCCTTCGACAATTCCTTTAACAACAAGGTGCTGGTCAAG CAGGAAGAGAACTCTAAAAAGGGCAATAGGACTCCTTTCCAGTACCTGTCTAGTTCAGATTCCA AGATCTCTTACGAAACCTTTAAAAAGCACATTCTGAATCTGGCCAAAGGAAAGGGCCGCATCAG CAAGACCAAAAAGGAGTACCTGCTGGAAGAGCGGGACATCAACAGATTCTCCGTCCAGAAGGAT TTTATTAACCGGAATCTGGTGGACACAAGATACGCTACTCGCGGCCTGATGAATCTGCTGCGAT CCTATTTCCGGGTGAACAATCTGGATGTGAAAGTCAAGTCCATCAACGGCGGGTTCACATCTTT TCTGAGGCGCAAATGGAAGTTTAAAAAGGAGCGCAACAAAGGGTACAAGCACCATGCCGAAGAT GCTCTGATTATCGCAAATGCCGACTTCATCTTTAAGGAGTGGAAAAAGCTGGACAAAGCCAAGA AAGTGATGGAGAACCAGATGTTCGAAGAGAAGCAGGCCGAATCTATGCCCGAAATCGAGACAGA ACAGGAGTACAAGGAGATTTTCATCACTCCTCACCAGATCAAGCATATCAAGGATTTCAAGGAC TACAAGTACTCTCACCGGGTGGATAAAAAGCCCAACAGAGAGCTGATCAATGACACCCTGTATA GTACAAGAAAAGACGATAAGGGGAATACCCTGATTGTGAACAATCTGAACGGACTGTACGACAA AGATAATGACAAGCTGAAAAAGCTGATCAACAAAAGTCCCGAGAAGCTGCTGATGTACCACCAT GATCCTCAGACATATCAGAAACTGAAGCTGATTATGGAGCAGTACGGCGACGAGAAGAACCCAC TGTATAAGTACTATGAAGAGACTGGGAACTACCTGACCAAGTATAGCAAAAAGGATAATGGCCC CGTGATCAAGAAGATCAAGTACTATGGGAACAAGCTGAATGCCCATCTGGACATCACAGACGAT TACCCTAACAGTCGCAACAAGGTGGTCAAGCTGTCACTGAAGCCATACAGATTCGATGTCTATC TGGACAACGGCGTGTATAAATTTGTGACTGTCAAGAATCTGGATGTCATCAAAAAGGAGAACTA CTATGAAGTGAATAGCAAGTGCTACGAAGAGGCTAAAAAGCTGAAAAAGATTAGCAACCAGGCA GAGTTCATCGCCTCCTTTTACAACAACGACCTGATTAAGATCAATGGCGAACTGTATAGGGTCA TCGGGGTGAACAATGATCTGCTGAACCGCATTGAAGTGAATATGATTGACATCACTTACCGAGA GTATCTGGAAAACATGAATGATAAGCGCCCCCCTCGAATTATCAAAACAATTGCCTCTAAGACT CAGAGTATCAAAAAGTACTCAACCGACATTCTGGGAAACCTGTATGAGGTGAAGAGCAAAAAGC ACCCTCAGATTATCAAAAAGGGC
(SEQ ID NO: 39)
If any of the above Cas9 sequences are fused with a peptide or polypeptide at the C- terminus, it is understood that the stop codon will be removed.
Other Cas Molecules and Cas Polypeptides
Various types of Cas molecules or Cas polypeptides can be used to practice the inventions disclosed herein. In some embodiments, Cas molecules of Type II Cas systems are used. In other embodiments, Cas molecules of other Cas systems are used. For example, Type I or Type III Cas molecules may be used. Exemplary Cas molecules (and Cas systems) are described, e.g., in Haft et al, PLoS COMPUTATIONAL BIOLOGY 2005, 1(6): e60 and Makarova et al, NATURE REVIEW MICROBIOLOGY 2011, 9:467-477, the contents of both references are incorporated herein by reference in their entirety. Exemplary Cas molecules (and Cas systems) are also shown in Table 26.
Figure imgf000583_0001
Table 26: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft ei a/.§ encoded protein superfamily) of
(PDB encoded
accessions)1 protein
cas4 • Subtype I-A cas4 and csal NA COG1468 APE1239 and BH0340
• Subtype I-B
• Subtype I-C
• Subtype I-D
• Subtype II- B
cas5 • Subtype I-A cas5a, cas5d, 3KG4 COG1688 APE1234, BH0337,
• Subtype I-B cas5e, cas5h, (RAMP) devS and ygcl
• Subtype I-C cas5p, cas5t
• Subtype I-E and cmx5
cas6 • Subtype I-A cas6 and cmx6 3I4H COG1583 and PF1131 and slr7014
• Subtype I-B COG5551
• Subtype I-D (RAMP)
• Subtype III- Α· Subtype
III-B
cas6e • Subtype I-E cse3 1WJ9 (RAMP) ygcH
cas6f • Subtype I-F csy4 2XLJ (RAMP) yl727
cas7 • Subtype I-A csal, csd2, NA COG 1857 and devR and ygcJ
• Subtype I-B cse4, csh2, COG3649
• Subtype I-C cspl and cst2 (RAMP)
• Subtype I-E
cas8al • Subtype I- cmxl, cstl, NA BH0338-like LA3191 and
A** csx8, csx 13 PG2018
and CXXC- CXXC
cas8a2 • Subtype I- csa4 and csx9 NA PH0918 AF0070, AF1873,
A** MJ0385, PF0637,
PH0918 and SSO1401 cas8b • Subtype I- cshl and NA BH0338-like MTH1090 and
B« TM1802 TM1802 cas8c • Subtype I- csdl and cspl NA BH0338-like BH0338
C**
cas9 • Type II** csnl and csxl2 NA COG3513 FTN_0757 and
SPyl046 cas 10 • Type III** cmr2, csml NA COG1353 MTH326, Rv2823c and csxll and TM1794 caslOd • Subtype I- csc3 NA COG1353 slr7011
D**
csyl • Subtype I- csyl NA yl724-like yl724
F**
csy2 • Subtype I-F csy2 NA (RAMP) y!725 Table 26: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Hatt et al encoded protein superfamily) of
(PDB encoded
accessions)1 protein
csy3 • Subtype I-F csy3 NA (RAMP) yl726
csel • Subtype I- csel NA YgcL-like ygcL
cse2 • Subtype I-E cse2 2ZCA YgcK-like ygcK
cscl • Subtype I-D cscl NA alrl563-like alrl563
(RAMP)
csc2 • Subtype I-D cscl and csc2 NA COG1337 slr7012
(RAMP)
csa5 • Subtype I-A csa5 NA AF1870 AF1870, MJ0380,
PF0643 and SS01398 csn2 • Subtype II- csn2 NA SPyl049-like SPyl049
A
csm.2 • Subtype III- csm.2 NA COG1421 MTH1081 and
A« SERP2460 csm.3 • Subtype III- csc2 and csm.3 NA COG1337 MTH1080 and
A (RAMP) SERP2459 csm.4 • Subtype III- csm4 NA COG 1567 MTH1079 and
A (RAMP) SERP2458 csm5 • Subtype III- csm5 NA COG1332 MTH1078 and
A (RAMP) SERP2457 csm.6 • Subtype III- APE2256 and 2WTE COG1517 APE2256 and
A csm6 SS01445 cmrl • Subtype Hi- cmrl NA COG 1367 PF1130
fi (RAMP)
cmr3 • Subtype Hi- cmr3 NA COG 1769 PF1128
fi (RAMP)
cmr4 • Subtype Hi- cmr4 NA COG1336 PF1126
fi (RAMP)
cmr5 • Subtype III- cmr5 2ZOP and 20EB COG3337 MTH324 and PF1125
cmr6 • Subtype Hi- cmr6 NA COG 1604 PF1124
fi (RAMP)
csbl • Subtype I-U GSU0053 NA (RAMP) Balac_1306 and
GSU0053 csb2 • Subtype I- NA NA (RAMP) Balac_1305 and
U GSU0054 csb3 • Subtype I-U NA NA (RAMP) Balac_1303 csx 17 • Subtype I-U NA NA NA Btus_2683 csx 14 • Subtype I-U NA NA NA GSU0052 Table 26: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Hatt et al encoded protein superfamily) of
(PDB encoded
accessions)1 protein
csx 10 • Subtype I-U csx 10 NA (RAMP) Caur_2274 csx 16 • Subtype III- VVA1548 NA NA VVA1548
U
csaX • Subtype III- csaX NA NA SS01438
U
csx3 • Subtype III- csx3 NA NA AF1864
U
csxl • Subtype III- csa3, csxl, lXMX and 2171 COG1517 and MJ1666, NE0113,
U csx2, DXTHG, COG4006 PF1127 and TM1812
NE0113 and
TIGR02710
csx 15 • Unknown NA NA TTE2665 TTE2665 csfl • Type U csfl NA NA AFE_1038 csfl • Type U csfl NA (RAMP) AFE_1039 csf3 • Type U csf3 NA (RAMP) AFE_1040 csf4 • Type U csf4 NA NA AFE_1037
IV. Functional Analysis of Candidate Molecules
Candidate Cas9 molecules, candidate gRNA molecules, candidate Cas9 molecule/gRNA molecule complexes, can be evaluated by art-known methods or as described herein. For example, exemplary methods for evaluating the endonuclease activity of Cas9 molecule are described, e.g., in Jinek et al, SCIENCE 2012, 337(6096):816-821.
Binding and Cleavage Assay: Testing the endonuclease activity of Cas9 molecule
The ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in a plasmid cleavage assay. In this assay, synthetic or in vitro- transcribed gRNA molecule is pre-annealed prior to the reaction by heating to 95 °C and slowly cooling down to room temperature. Native or restriction digest-linearized plasmid DNA (300 ng (~8 nM)) is incubated for 60 min at 37°C with purified Cas9 protein molecule (50-500 nM) and gRNA (50-500 nM, 1: 1) in a Cas9 plasmid cleavage buffer (20 mM HEPES pH 7.5, 150 mM KC1, 0.5 mM DTT, 0.1 mM EDTA) with or without 10 mM MgCl2. The reactions are stopped with 5X DNA loading buffer (30% glycerol, 1.2% SDS, 250 mM EDTA), resolved by a 0.8 or 1% agarose gel electrophoresis and visualized by ethidium bromide staining. The resulting cleavage products indicate whether the Cas9 molecule cleaves both DNA strands, or only one of the two strands. For example, linear DNA products indicate the cleavage of both DNA strands. Nicked open circular products indicate that only one of the two strands is cleaved.
Alternatively, the ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in an oligonucleotide DNA cleavage assay. In this assay, DNA oligonucleotides (10 pmol) are radiolabeled by incubating with 5 units T4 polynucleotide kinase and -3-6 pmol (-20-40 mCi) [γ-32Ρ]-ΑΤΡ in IX T4 polynucleotide kinase reaction buffer at 37°C for 30 min, in a 50 μΐ^ reaction. After heat inactivation (65°C for 20 min), reactions are purified through a column to remove unincorporated label. Duplex substrates (100 nM) are generated by annealing labeled oligonucleotides with equimolar amounts of unlabeled complementary oligonucleotide at 95 °C for 3 min, followed by slow cooling to room temperature. For cleavage assays, gRNA molecules are annealed by heating to 95°C for 30 s, followed by slow cooling to room temperature. Cas9 (500 nM final concentration) is pre- incubated with the annealed gRNA molecules (500 nM) in cleavage assay buffer (20 mM
HEPES pH 7.5, 100 mM KC1, 5 mM MgC12, 1 mM DTT, 5% glycerol) in a total volume of 9 μΐ. Reactions are initiated by the addition of 1 μΐ target DNA (10 nM) and incubated for 1 h at 37°C. Reactions are quenched by the addition of 20 μΐ of loading dye (5 mM EDTA, 0.025% SDS, 5% glycerol in formamide) and heated to 95°C for 5 min. Cleavage products are resolved on 12% denaturing polyacrylamide gels containing 7 M urea and visualized by phosphorimaging. The resulting cleavage products indicate that whether the complementary strand, the non- complementary strand, or both, are cleaved.
One or both of these assays can be used to evaluate the suitability of a candidate gRNA molecule or candidate Cas9 molecule. Binding Assay: Testing the binding of Cas9 molecule to target DNA
Exemplary methods for evaluating the binding of Cas9 molecule to target DNA are described, e.g., in Jinek et al, SCIENCE 2012; 337(6096):816-821.
For example, in an electrophoretic mobility shift assay, target DNA duplexes are formed by mixing of each strand (10 nmol) in deionized water, heating to 95 °C for 3 min and slow cooling to room temperature. All DNAs are purified on 8% native gels containing IX TBE. DNA bands are visualized by UV shadowing, excised, and eluted by soaking gel pieces in DEPC-treated H20. Eluted DNA is ethanol precipitated and dissolved in DEPC-treated H20. DNA samples are 5' end labeled with [γ-32Ρ]-ΑΤΡ using T4 polynucleotide kinase for 30 min at 37°C. Polynucleotide kinase is heat denatured at 65°C for 20 min, and unincorporated radiolabel is removed using a column. Binding assays are performed in buffer containing 20 mM HEPES pH 7.5, 100 mM KC1, 5 mM MgCl2, 1 mM DTT and 10% glycerol in a total volume of 10 μΐ. Cas9 protein molecule is programmed with equimolar amounts of pre-annealed gRNA molecule and titrated from 100 pM to 1 μΜ. Radiolabeled DNA is added to a final concentration of 20 pM. Samples are incubated for 1 h at 37°C and resolved at 4°C on an 8% native polyacrylamide gel containing IX TBE and 5 mM MgCl2. Gels are dried and DNA visualized by
phosphorimaging.
Differential Scanning Flourimetry (DSF)
The thermostability of Cas9-gRNA ribonucleoprotein (RNP) complexes can be measured via DSF. This technique measures the thermostability of a protein, which can increase under favorable conditions such as the addition of a binding RNA molecule, e.g., a gRNA.
The assay is performed using two different protocols, one to test the best stoichiometric ratio of gRNA:Cas9 protein and another to determine the best solution conditions for RNP formation.
To determine the best solution to form RNP complexes, a 2uM solution of Cas9 in water+10x SYPRO Orange® (Life Techonologies cat#S-6650) and dispensed into a 384 well plate. An equimolar amount of gRNA diluted in solutions with varied pH and salt is then added. After incubating at room temperature for lO'and brief centrifugation to remove any bubbles,a Bio-Rad CFX384™ Real-Time System CI 000 Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every 10 seconds.
The second assay consists of mixing various concentrations of gRNA with 2uM Cas9 in optimal buffer from assay 1 above and incubating at RT for 10' in a 384 well plate. An equal volume of optimal buffer + lOx SYPRO Orange® (Life Techonologies cat#S-6650) is added and the plate sealed with Microseal® B adhesive (MSB-1001). Following brief centrifugation to remove any bubbles, a Bio-Rad CFX384™ Real-Time System CIOOO Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every 10 seconds.
V. Genome Editing Approaches
Described herein are methods for (1) targeted knockout of one or both alleles of the
BCL11A gene using NHEJ and (2) NHEJ-mediated removal of an enhancer region in the BCL11A gene (see Section V.l). In another embodiment, methods are provided for targeted knockdown of the BCL11A gene (see Section V.2).
V.l NHEJ Approaches for Gene Targeting
As described herein, nuclease-induced non-homologous end-joining (NHEJ) can be used to target gene-specific knockouts. Nuclease-induced NHEJ can also be used to remove (e.g., delete) sequences in a gene of interest.
While not wishing to be bound by theory, it is believed that, in an embodiment, the genomic alterations associated with the methods described herein rely on nuclease-induced NHEJ and the error-prone nature of the NHEJ repair pathway. NHEJ repairs a double-strand break in the DNA by joining together the two ends; however, generally, the original sequence is restored only if two compatible ends, exactly as they were formed by the double-strand break, are perfectly ligated. The DNA ends of the double-strand break are frequently the subject of enzymatic processing, resulting in the addition or removal of nucleotides, at one or both strands, prior to rejoining of the ends. This results in the presence of insertion and/or deletion (indel) mutations in the DNA sequence at the site of the NHEJ repair. Two-thirds of these mutations typically alter the reading frame and, therefore, produce a non-functional protein. Additionally, mutations that maintain the reading frame, but which insert or delete a significant amount of sequence, can destroy functionality of the protein. This is locus dependent as mutations in critical functional domains are likely less tolerable than mutations in non-critical regions of the protein.
The indel mutations generated by NHEJ are unpredictable in nature; however, at a given break site certain indel sequences are favored and are over represented in the population, likely due to small regions of microhomology. The lengths of deletions can vary widely; most commonly in the 1-50 bp range, but they can reach greater than 100-200 bp. Insertions tend to be shorter and often include short duplications of the sequence immediately surrounding the break site. However, it is possible to obtain large insertions, and in these cases, the inserted sequence has often been traced to other regions of the genome or to plasmid DNA present in the cells.
Because NHEJ is a mutagenic process, it can also be used to delete small sequence motifs (e.g., motifs less than or equal to 50 nucleotides in length) as long as the generation of a specific final sequence is not required. If a double- strand break is targeted near to a target sequence, the deletion mutations caused by the NHEJ repair often span, and therefore remove, the unwanted nucleotides. For the deletion of larger DNA segments, introducing two double-strand breaks, one on each side of the sequence, can result in NHEJ between the ends with removal of the entire intervening sequence. In this way, DNA segments as large as several hundred kilobases can be deleted. Both of these approaches can be used to delete specific DNA sequences; however, the error-prone nature of NHEJ may still produce indel mutations at the site of repair.
Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate NHEJ- mediated indels. NHEJ-mediated indels targeted to the the gene, e.g., a coding region, e.g., an early coding region of a gene, of interest can be used to knockout (i.e., eliminate expression of) a gene of interest. For example, early coding region of a gene of interest includes sequence immediately following a start codon, within a first exon of the coding sequence, or within 500 bp of the start codon (e.g., less than 500, 450, 400, 350, 300, 250, 200, 150, 100 or 50 bp).
Placement of double strand or single strand breaks relative to the target position
In an embodiment, in which a gRNA and Cas9 nuclease generate a double strand break for the purpose of inducing NHEJ-mediated indels, a gRNA, e.g., a unimolecular (or chimeric) or modular gRNA molecule, is configured to position one double-strand break in close proximity to a nucleotide of the target position. In an embodiment, the cleavage site is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position).
In an embodiment, in which two gRNAs complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing NHEJ-mediated indels, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position two single-strand breaks to provide for NHEJ repair a nucleotide of the target position. In an embodiment, the gRNAs are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, essentially mimicking a double strand break. In an embodiment, the closer nick is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position), and the two nicks are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). In an embodiment, the gRNAs are configured to place a single strand break on either side of a nucleotide of the target position.
Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate breaks both sides of a target position. Double strand or paired single strand breaks may be generated on both sides of a target position to remove the nucleic acid sequence between the two cuts (e.g., the region between the two breaks in deleted). In one embodiment, two gRNAs, e.g.,
independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single strand breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently,
unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single strand breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). V.2 Targeted Knockdown
Unlike CRISPR/Cas-mediated gene knockout, which permanently eliminates expression by mutating the gene at the DNA level, CRISPR/Cas knockdown allows for temporary reduction of gene expression through the use of artificial transcription factors. Mutating key residues in both DNA cleavage domains of the Cas9 protein (e.g. the DIOA and H840A mutations) results in the generation of a catalytically inactive Cas9 (eiCas9 which is also known as dead Cas9 or dCas9) molecule. A catalytically inactive Cas9 complexes with a gRNA and localizes to the DNA sequence specified by that gRNA's targeting domain, however, it does not cleave the target DNA. Fusion of the dCas9 to an effector domain, e.g., a transcription repression domain, enables recruitment of the effector to any DNA site specified by the gRNA. Although an enzymatically inactive (eiCas9) Cas9 molecule itself can block transcription when recruited to early regions in the coding sequence, more robust repression can be achieved by fusing a transcriptional repression domain (for example KRAB, SID or ERD) to the Cas9 and recruiting it to the target knockdown position, e.g., within lOOObp of sequence 3' of the start codon or within 500 bp of a promoter region 5' of the start codon of a gene. It is likely that targeting DNAsel hypersensitive sites (DHSs) of the promoter may yield more efficient gene repression or activation because these regions are more likely to be accessible to the Cas9 protein and are also more likely to harbor sites for endogenous transcription factors. Especially for gene repression, it is contemplated herein that blocking the binding site of an endogenous transcription factor would aid in downregulating gene expression. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status.
In an embodiment, a gRNA molecule can be targeted to a known transcription response elements (e.g., promoters, enhancers, etc.), a known upstream activating sequences (UAS), and/or sequences of unknown or known function that are suspected of being able to control expression of the target DNA.
CRISPR/Cas-mediated gene knockdown can be used to reduce expression of an unwanted allele or transcript. Contemplated herein are scenarios wherein permanent destruction of the gene is not ideal. In these scenarios, site-specific repression may be used to temporarily reduce or eliminate expression. It is also contemplated herein that the off-target effects of a Cas- repressor may be less severe than those of a Cas-nuclease as a nuclease can cleave any DNA sequence and cause mutations whereas a Cas-repressor may only have an effect if it targets the promoter region of an actively transcribed gene. However, while nuclease-mediated knockout is permanent, repression may only persist as long as the Cas-repressor is present in the cells. Once the repressor is no longer present, it is likely that endogenous transcription factors and gene regulatory elements would restore expression to its natural state.
V.3 Single- Strand Annealing
Single strand annealing (SSA) is another DNA repair process that repairs a double-strand break between two repeat sequences present in a target nucleic acid. Repeat sequences utilized by the SSA pathway are generally greater than 30 nucleotides in length. Resection at the break ends occurs to reveal repeat sequences on both strands of the target nucleic acid. After resection, single strand overhangs containing the repeat sequences are coated with RPA protein to prevent the repeats sequences from inappropriate annealing, e.g., to themselves. RAD52 binds to and each of the repeat sequences on the overhangs and aligns the sequences to enable the annealing of the complementary repeat sequences. After annealing, the single-strand flaps of the overhangs are cleaved. New DNA synthesis fills in any gaps, and ligation restores the DNA duplex. As a result of the processing, the DNA sequence between the two repeats is deleted. The length of the deletion can depend on many factors including the location of the two repeats utilized, and the pathway or processivity of the resection.
In contrast to HDR pathways, SSA does not require a template nucleic acid to alter or correct a target nucleic acid sequence. Instead, the complementary repeat sequence is utilized.
V. 4 Other DNA Repair Pathways
SSBR (single strand break repair)
Single- stranded breaks (SSB) in the genome are repaired by the SSBR pathway, which is a distinct mechanism from the DSB repair mechanisms discussed above. The SSBR pathway has four major stages: SSB detection, DNA end processing, DNA gap filling, and DNA ligation. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August
2008), and a summary is given here.
In the first stage, when a SSB forms, PARP1 and/or PARP2 recognize the break and recruit repair machinery. The binding and activity of PARP1 at DNA breaks is transient and it seems to accelerate SSBr by promoting the focal accumulation or stability of SSBr protein complexes at the lesion. Arguably the most important of these SSBr proteins is XRCCl, which functions as a molecular scaffold that interacts with, stabilizes, and stimulates multiple enzymatic components of the SSBr process including the protein responsible for cleaning the
DNA 3' and 5' ends. For instance, XRCCl interacts with several proteins (DNA polymerase beta, PNK, and three nucleases, APE1, APTX, and APLF) that promote end processing. APE1 has endonuclease activity. APLF exhibits endonuclease and 3' to 5' exonuclease activities.
APTX has endonuclease and 3' to 5' exonuclease activity.
This end processing is an important stage of SSBR since the 3'- and/or 5 '-termini of most, if not all, SSBs are 'damaged'. End processing generally involves restoring a damaged 3'- end to a hydroxylated state and and/or a damaged 5' end to a phosphate moiety, so that the ends become ligation-competent. Enzymes that can process damaged 3' termini include PNKP,
APE1, and TDP1. Enzymes that can process damaged 5' termini include PNKP, DNA polymerase beta, and APTX. LIG3 (DNA ligase III) can also participate in end processing.
Once the ends are cleaned, gap filling can occur.
At the DNA gap filling stage, the proteins typically present are PARP1, DNA polymerase beta, XRCCl, FEN1 (flap endonculease 1), DNA polymerase delta/epsilon, PCNA, and LIG1.
There are two ways of gap filling, the short patch repair and the long patch repair. Short patch repair involves the insertion of a single nucleotide that is missing. At some SSBs, "gap filling" might continue displacing two or more nucleotides (displacement of up to 12 bases have been reported). FEN1 is an endonuclease that removes the displaced 5'-residues. Multiple DNA polymerases, including Pol β , are involved in the repair of SSBs, with the choice of DNA polymerase influenced by the source and type of SSB.
In the fourth stage, a DNA ligase such as LIG1 (Ligase I) or LIG3 (Ligase III) catalyzes joining of the ends. Short patch repair uses Ligase III and long patch repair uses Ligase I.
Sometimes, SSBR is replication-coupled. This pathway can involve one or more of CtIP,
MRN, ERCC1, and FEN1. Additional factors that may promote SSBR include: aPARP, PARP1, PARP2, PARG, XRCC1, DNA polymerase b, DNA polymerase d, DNA polymerase e, PCNA, LIGl, PNK, PNKP, APEl, APTX, APLF, TDPl, LIG3, FENl, CtIP, MRN, and ERCCl.
MMR (mismatch repair)
Cells contain three excision repair pathways: MMR, BER, and NER. The excision repair pathways hace a common feature in that they typically recognize a lesion on one strand of the DNA, then exo/endonucleaseases remove the lesion and leave a 1-30 nucleotide gap that is sub- sequentially filled in by DNA polymerase and finally sealed with ligase. A more complete picture is given in Li, Cell Research (2008) 18:85-98, and a summary is provided here.
Mismatch repair (MMR) operates on mispaired DNA bases.
The MSH2/6 or MSH2/3 complexes both have ATPases activity that plays an important role in mismatch recognition and the initiation of repair. MSH2/6 preferentially recognizes base- base mismatches and identifies mispairs of 1 or 2 nucleotides, while MSH2/3 preferentially recognizes larger ID mispairs.
hMLHl heterodimerizes with hPMS2 to form hMutL which possesses an ATPase activity and is important for multiple steps of MMR. It possesses a PCNA/replication factor C (RFC)-dependent endonuclease activity which plays an important role in 3 ' nick-directed MMR involving EXOl. (EXOl is a participant in both HR and MMR.) It regulates termination of mismatch-provoked excision. Ligase I is the relevant ligase for this pathway. Additional factors that may promote MMR include: EXOl, MSH2, MSH3, MSH6, MLH1, PMS2, MLH3, DNA Pol d, RPA, HMGB1, RFC, and DNA ligase I.
Base excision repair (BER)
The base excision repair (BER) pathway is active throughout the cell cycle; it is responsible primarily for removing small, non-helix-distorting base lesions from the genome. In contrast, the related Nucleotide Excision Repair pathway (discussed in the next section) repairs bulky helix-distorting lesions. A more detailed explanation is given in Caldecott, Nature
Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
Upon DNA base damage, base excision repair (BER) is initiated and the process can be simplified into five major steps: (a) removal of the damaged DNA base; (b) incision of the subsequent a basic site; (c) clean-up of the DNA ends; (d) insertion of the correct nucleotide into the repair gap; and (e) ligation of the remaining nick in the DNA backbone. These last steps are similar to the SSBR.
In the first step, a damage- specific DNA glycosylase excises the damaged base through cleavage of the N-glycosidic bond linking the base to the sugar phosphate backbone. Then AP endonuclease-1 (APE1) or bifunctional DNA glycosylases with an associated lyase activity incised the phosphodiester backbone to create a DNA single strand break (SSB). The third step of BER involves cleaning-up of the DNA ends. The fourth step in BER is conducted by Pol β that adds a new complementary nucleotide into the repair gap and in the final step
XRCCl/Ligase III seals the remaining nick in the DNA backbone. This completes the short- patch BER pathway in which the majority (-80%) of damaged DNA bases are repaired.
However, if the 57 -ends in step 3 are resistant to end processing activity, following one nucleotide insertion by Pol β there is then a polymerase switch to the replicative DNA polymerases, Pol δ/ε, which then add -2-8 more nucleotides into the DNA repair gap. This creates a 5 ' -flap structure, which is recognized and excised by flap endonuclease-1 (FEN-1) in association with the processivity factor proliferating cell nuclear antigen (PCNA). DNA ligase I then seals the remaining nick in the DNA backbone and completes long-patch BER. Additional factors that may promote the BER pathway include: DNA glycosylase, APE1, Polb, Pold, Pole, XRCC1, Ligase III, FEN-1, PCNA, RECQL4, WRN, MYH, PNKP, and APTX. Nucleotide excision repair (NER)
Nucleotide excision repair (NER) is an important excision mechanism that removes bulky helix-distorting lesions from DNA. Additional details about NER are given in Marteijn et al., Nature Reviews Molecular Cell Biology 15, 465-481 (2014), and a summary is given here.
NER a broad pathway encompassing two smaller pathways: global genomic NER (GG-NER) and transcription coupled repair NER (TC-NER). GG-NER and TC-NER use different factors for recognizing DNA damage. However, they utilize the same machinery for lesion incision, repair, and ligation.
Once damage is recognized, the cell removes a short single- stranded DNA segment that contains the lesion. Endonucleases XPF/ERCC1 and XPG (encoded by ERCC5) remove the lesion by cutting the damaged strand on either side of the lesion, resulting in a single-strand gap of 22-30 nucleotides. Next, the cell performs DNA gap filling synthesis and ligation. Involved in this process are: PCNA, RFC, DNA Pol δ, DNA Pol ε or DNA Pol κ, and DNA ligase I or XRCCl/Ligase III. Replicating cells tend to use DNA pol ε and DNA ligase I, while non- replicating cells tend to use DNA Pol δ, DNA Pol κ, and the XRCC1/ Ligase III complex to perform the ligation step.
NER can involve the following factors: XPA-G, POLH, XPF, ERCCl, XPA-G, and
LIGl. Transcription-coupled NER (TC-NER) can involve the following factors: CSA, CSB, XPB, XPD, XPG, ERCCl, and TTDA. Additional factors that may promote the NER repair pathway include XPA-G, POLH, XPF, ERCCl, XPA-G, LIGl, CSA, CSB, XPA, XPB, XPC, XPD, XPF, XPG, TTDA, UVSSA, USP7, CETN2, RAD23B, UV-DDB, CAK subcomplex, RPA, and PCNA.
Interstrand Crosslink (ICL)
A dedicated pathway called the ICL repair pathway repairs interstrand crosslinks.
Interstrand crosslinks, or covalent crosslinks between bases in different DNA strand, can occur during replication or transcription. ICL repair involves the coordination of multiple repair processes, in particular, nucleolytic activity, translesion synthesis (TLS), and HDR. Nucleases are recruited to excise the ICL on either side of the crosslinked bases, while TLS and HDR are coordinated to repair the cut strands. ICL repair can involve the following factors:
endonucleases, e.g., XPF and RAD51C, endonucleases such as RAD51, translesion polymerases, e.g., DNA polymerase zeta and Revl), and the Fanconi anemia (FA) proteins, e.g., FancJ.
Other pathways
Several other DNA repair pathways exist in mammals.
Translesion synthesis (TLS) is a pathway for repairing a single stranded break left after a defective replication event and involves translesion polymerases, e.g., DNA pol and Revl..
Error-free postreplication repair (PRR) is another pathway for repairing a single stranded break left after a defective replication event.
V.5 Examples of gRNAs in Genome Editing Methods
gRNA molecules as described herein can be used with Cas9 molecules that generate a double strand break or a single strand break to alter the sequence of a target nucleic acid, e.g., target position or target genetic signature. gRNA molecules useful in these methods are described below.
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) it can position, e.g., when targeting a Cas9 molecule that makes double strand breaks, a double strand break (i) within 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) it has a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; (iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
Jl an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
Jl an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
Jl an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
11 an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
11 an embodiment, the gRNA is configured such that it comprises properties: a and c.
11 an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
11 an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i)
11 an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii
11 an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i)
[n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii). In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus , S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii)
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
In an embodiment, the gRNA is configured such that it comprises properties: a and c.
In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i ^ )·
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii). In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), n an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA is used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
In an embodiment, the gRNA is used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at H840, e.g., a H840A.
In an embodiment, a pair of gRNAs, e.g., a pair of chimeric gRNAs, comprising a first and a second gRNA, is configured such that they comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides;
c) for one or both:
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S.
pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; or, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; d) the gRNAs are configured such that, when hybridized to target nucleic acid, they are separated by 0-50, 0-100, 0-200, at least 10, at least 20, at least 30 or at least 50 nucleotides; e) the breaks made by the first gRNA and second gRNA are on different strands; and f) the PAMs are facing outwards.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ii). In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iv).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(v).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vi).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(viii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ix).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(x).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(xi).
In an embodiment, one or both of the gRNAs configured such that it comprises properties: a and c.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a, b, and c.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, d, and e.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at H840, e.g., the H840A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
VI. Target Cells
Cas9 molecules and gRNA molecules, e.g., a Cas9 molecule/gRNA molecule complex, can be used to manipulate a cell, e.g., to edit a target nucleic acid, in a wide variety of cells.
In an embodiment, a cell is manipulated by editing (e.g., introducing a mutation in) the BCL11A target gene, e.g., as described herein. In an embodiment, the expression of the BCL11A target gene is modulated, e.g., in vivo. In another embodiment, the expression of the BCL11A target gene is modulated, e.g., ex vivo.
The Cas9 and gRNA molecules described herein can be delivered to a target cell. In an embodiment, the target cell is a circulating blood cell, e.g., a reticulocyte, a myeloid progenitor cell, or a hematopoietic stem cell. In an embodiment, the target cell is a bone marrow cell (e.g., a myeloid progenitor cell, an erythroid progenitor cell, a hematopoietic stem cell, or a mesenchymal stem cell). In an embodiment, the target cell is a myeloid progenitor cell (e.g., a common myeloid progenitor (CMP) cell). In an embodiment, the target cell is an erythroid progenitor cell (e.g., a megakaryocyte erythroid progenitor (MEP) cell). In an embodiment, the target cell is a hematopoietic stem cell (e.g., a long term hematopoietic stem cell (LT-HSC), a short term hematopoietic stem cell (ST-HSC), a multipotent progenitor (MPP) cell, a lineage restricted progenitor (LRP) cell).
In an embodiment, the target cell is manipulated ex vivo by editing (e.g., introducing a mutation in) the BCL11A target gene and/or modulating the expression of the BCL11A target gene, and administered to the subject. Sources of target cells for ex vivo manipulation may include, by way of example, the subject's blood, the subject's cord blood, or the subject's bone marrow. Sources of target cells for ex vivo manipulation may also include, by way of example, heterologous donor blood, cord blood, or bone marrow.
In an embodiment, a myeloid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the myeloid progenitor cell is returned to the subject. In an embodiment, an erythroid progenitor cell is removed from the subject, manipulated ex vivo as described above, and the erythroid progenitor cell is returned to the subject. In an embodiment, a hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the hematopoietic stem cell is returned to the subject. In an embodiment, a CD34+ hematopoietic stem cell is removed from the subject, manipulated ex vivo as described above, and the CD34+ hematopoietic stem cell is returned to the subject.
A suitable cell can also include a stem cell such as, by way of example, an embryonic stem cell, an induced pluripotent stem cell, a hematopoietic stem cell, a neuronal stem cell and a mesenchymal stem cell. In an embodiment, the cell is an induced pluripotent stem (iPS) cell or a cell derived from an iPS cell, e.g., an iPS cell generated from the subject, modified to induce a mutation and differentiated into a clinically relevant cell such as a myeloid progenitor cell, an erythroid progenitor cell or a hematopoietic stem cell. In an embodiment, AAV is used to transduce the target cells, e.g., the target cells described herein.
Cells produced by the methods described herein may be used immediately. Alternatively, the cells may be frozen (e.g., in liquid nitrogen) and stored for later use. The cells will usually be frozen in 10% dimehtylsulfoxide (DMSO), 50% serum, 40% buffered medium, or some other such solution as is commonly used in the art to preserve cells at such freezing temperature and thawed in such a manner as commonly known in the art for thawing frozen cultured cells.
VII. Delivery, Formulations and Routes of Administration
The components, e.g., a Cas9 molecule and gRNA molecule can be delivered or formulated in a variety of forms, see, e.g., Tables 27-28. In an embodiment, one Cas9 molecule and two or more (e.g., 2, 3, 4, or more) different gRNA molecules are delivered, e.g., by an AAV vector. In an embodiment, the sequence encoding the Cas9 molecule and the sequence(s) encoding the two or more (e.g., 2, 3, 4, or more) different gRNA molecules are present on the same nucleic acid molecule, e.g., an AAV vector. When a Cas9 or gRNA component is encoded as DNA for delivery, the DNA will typically but not necessarily include a control region, e.g., comprising a promoter, to effect expression. Useful promoters for Cas9 molecule sequences include CMV, EFS, EF-la, MSCV, PGK, CAG promoters. In an embodiment, the promoter is a constitutive promoter. In another embodiment, the promoter is a tissue specific promoter.
Useful promoters for gRNAs include HI, 7SK, tRNA, and U6 promoters. Promoters with similar or dissimilar strengths can be selected to tune the expression of components. Sequences encoding a Cas9 molecule can comprise a nuclear localization signal (NLS), e.g., an SV40 NLS. In an embodiment, the sequence encoding a Cas9 molecule comprises at least two nuclear localization signals. In an embodiment a promoter for a Cas9 molecule or a gRNA molecule can be, independently, inducible, tissue specific, or cell specific.
Table 27 provides examples of how the components can be formulated, delivered, or administered.
Table 27
Figure imgf000612_0001
from DNA, here from a single molecule.
DNA RNA In this embodiment, a Cas9 molecule, typically
an eaCas9 molecule, is transcribed from
DNA,and a gRNA is provided as in vitro
transcribed or synthesized RNA
mRNA RNA In this embodiment, a Cas9 molecule, typically
an eaCas9 molecule, is translated from in vitro
transcribed mRNA, and a gRNA is provided as
in vitro transcribed or synthesized RNA.
mRNA DNA In this embodiment, a Cas9 molecule, typically
an eaCas9 molecule, is translated from in vitro
transcribed mRNA, and a gRNA is transcribed
from DNA.
Protein DNA In this embodiment, a Cas9 molecule, typically
an eaCas9 molecule, is provided as a protein,
and a gRNA is transcribed from DNA.
Protein RNA In this embodiment, an eaCas9 molecule is
provided as a protein, and a gRNA is provided
as transcribed or synthesized RNA.
Table 28 summarizes various delivery methods for the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, as described herein.
Table 28
Figure imgf000613_0001
Vaccinia Virus YES Very NO DNA
Transient
Herpes Simplex YES Stable NO DNA
Virus
Non-Viral Cationic YES Transient Depends on Nucleic Acids
Liposomes what is and Proteins
delivered
Polymeric YES Transient Depends on Nucleic Acids
Nanoparticles what is and Proteins
delivered
Biological Attenuated YES Transient NO Nucleic Acids
Non-Viral Bacteria
Delivery Engineered YES Transient NO Nucleic Acids
Vehicles Bacteriophages
Mammalian YES Transient NO Nucleic Acids
Virus-like
Particles
Biological YES Transient NO Nucleic Acids liposomes:
Erythrocyte
Ghosts and
Exosomes
DNA-based Delivery of a Cas9 molecule and or one or more gRNA molecule
DNA encoding Cas9 molecules (e.g., eaCas9 molecules) and/or gRNA molecules, can be administered to subjects or delivered into cells by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding DNA can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA
complexes), or a combination thereof.
DNA encoding Cas9 molecules (e.g., eaCas9 molecules) and/or gRNA molecules can be conjugated to molecules promoting uptake by the target cells (e.g., the target cells described herein).
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a vector (e.g., viral vector/virus or plasmid).
A vector can comprise a sequence that encodes a Cas9 molecule and/or a gRNA molecule. A vector can also comprise a sequence encoding a signal peptide {e.g., for nuclear localization, nucleolar localization, mitochondrial localization), fused, e.g., to a Cas9 molecule sequence. For example, ae vector can comprise a nuclear localization sequence (e.g., from SV40) fused to the sequence encoding the Cas9 molecule.
One or more regulatory/control elements, e.g., a promoter, an enhancer, an intron, a polyadenylation signal, a Kozak consensus sequence, internal ribosome entry sites (IRES), a 2A sequence, and splice acceptor or donor can be included in the vectors. In an embodiment, the promoter is recognized by RNA polymerase II (e.g., a CMV promoter). In another embodiment, the promoter is recognized by RNA polymerase III (e.g., a U6 promoter). In an embodiment, the promoter is a regulated promoter (e.g., inducible promoter). In another embodiment, the promoter is a constitutive promoter. In an embodiment, the promoter is a tissue specific promoter. In an embodiment, the promoter is a viral promoter. In another embodiment, the promoter is a non-viral promoter.
In an embodiment, the vector or delivery vehicle is a viral vector (e.g., for generation of recombinant viruses). In an embodiment, the virus is a DNA virus (e.g., dsDNA or ssDNA virus). In another embodiment, the virus is an RNA virus (e.g., an ssRNA virus). Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
In an embodiment, the virus infects dividing cells. In another embodiment, the virus infects non-dividing cells. In an embodiment, the virus infects both dividing and non-dividing cells. In an embodiment, the virus can integrate into the host genome. In an embodiment, the virus is engineered to have reduced immunity, e.g., in human. In an embodiment, the virus is replication-competent. In another embodiment, the virus is replication-defective, e.g., having one or more coding regions for the genes necessary for additional rounds of virion replication and/or packaging replaced with other genes or deleted. In an embodiment, the virus causes transient expression of the Cas9 molecule and/or the gRNA molecule. In another embodiment, the virus causes long-lasting, e.g., at least 1 week, 2 weeks, 1 month, 2 months, 3 months, 6 months, 9 months, 1 year, 2 years, or permanent expression, of the Cas9 molecule and/or the gRNA molecule. The packaging capacity of the viruses may vary, e.g., from at least about 4 kb to at least about 30 kb, e.g., at least about 5 kb, 10 kb, 15 kb, 20 kb, 25 kb, 30 kb, 35 kb, 40 kb, 45 kb, or 50 kb.
In an embodiment, the viral vector recognizes a specific cell type or tissue. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., genetic modification(s) of one or more viral envelope glycoproteins to incorporate a targeting ligand such as a peptide ligand, a single chain antibody, or a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., a ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
In an embodiment, the Cas9- and/or gRNA-encoding sequence is delivered by a recombinant retrovirus. In an embodiment, the retrovirus (e.g., Moloney murine leukemia virus) comprises a reverse transcriptase, e.g., that allows integration into the host genome. In an embodiment, the retrovirus is replication-competent. In another embodiment, the retrovirus is replication-defective, e.g., having one of more coding regions for the genes necessary for additional rounds of virion replication and packaging replaced with other genes, or deleted.
In an embodiment, the Cas9- and/or gRNA-encoding sequence is delivered by a recombinant lentivirus. For example, the lentivirus is replication-defective, e.g., does not comprise one or more genes required for viral replication.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant adenovirus. In an embodiment, the adenovirus is engineered to have reduced immunity in human.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant AAV. In some embodiments, the AAV does not incorporate its geneome into that of a host cell, e.g., a target cell as describe herein. In an embodiment, the AAV can incorporate at least part of its genome into that of a host cell, e.g., a target cell as described herein. In an embodiment, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA. AAV serotypes that may be used in the disclosed methods, include AAV1, AAV2, modified AAV2 (e.g., modifications at Y444F, Y500F, Y730F and/or S662V), AAV3, modified AAV3 (e.g., modifications at Y705F, Y731F and/or T492V), AAV4, AAV5, AAV6, modified AAV6 (e.g., modifications at S663V and/or T492V), AAV8, AAV 8.2, AAV9, AAV rh 10, and pseudotyped AAV, such as AAV2/8, AAV2/5 and AAV2/6 can also be used in the disclosed methods. In an embodiment, an AAV capsid that can be used in the methods described herein is a capsid sequence from serotype AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhlO, AAV.rh32/33, AAV.rh43, AAV.rh64Rl, or AAV7m8.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered in a re- engineered AAV capsid, e.g., with 50% or greater, e.g., 60% or greater, 70% or greater, 80% or greater, 90% or greater, or 95% or greater, sequence homology with a capsid sequence from serotypes AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhl0, AAV.rh32/33, AAV.rh43, or AAV.rh64Rl.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a chimeric AAV capsid. Exemplary chimeric AAV capsids include, but are not limited to, AAV9il, AAV2i8, AAV-DJ, AAV2G9, AAV2i8G9, or AAV8G9.
In an embodiment, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a hybrid virus, e.g., a hybrid of one or more of the viruses described herein. In an embodiment, the hybrid virus is hybrid of an AAV (e.g., of any AAV serotype), with a Bocavirus, B19 virus, porcine AAV, goose AAV, feline AAV, canine AAV, or MVM.
A Packaging cell is used to form a virus particle that is capable of infecting a target cell. Such a cell includes a 293 cell, which can package adenovirus, and a ψ2 cell or a PA317 cell, which can package retrovirus. A viral vector used in gene therapy is usually generated by a producer cell line that packages a nucleic acid vector into a viral particle. The vector typically contains the minimal viral sequences required for packaging and subsequent integration into a host or target cell (if applicable), with other viral sequences being replaced by an expression cassette encoding the protein to be expressed, eg. Cas9. For example, an AAV vector used in gene therapy typically only possesses inverted terminal repeat (ITR) sequences from the AAV genome which are required for packaging and gene expression in the host or target cell. The missing viral functions can be supplied in trans by the packaging cell line and/or plasmid containing E2A, E4, and VA genes from adenovirus, and plasmid encoding Rep and Cap genes from AAV, as described in "Triple Transfection Protocol." Henceforth, the viral DNA is packaged in a cell line, which contains a helper plasmid encoding the other AAV genes, namely rep and cap, but lacking ITR sequences. In embodiment, the viral DNA is packaged in a producer cell line, which contains El A and/or EIB genes from adenovirus. The cell line is also infected with adenovirus as a helper. The helper virus (e.g., adenovirus or HSV) or helper plasmid promotes replication of the AAV vector and expression of AAV genes from the helper plasmid with ITRs. The helper plasmid is not packaged in significant amounts due to a lack of ITR sequences. Contamination with adenovirus can be reduced by, e.g., heat treatment to which adenovirus is more sensitive than AAV.
In an embodiment, the viral vector has the ability of cell type and/or tissue type recognition. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., geneticmodification of the viral envelope glycoproteins to incorporate targeting ligands such as a peptide ligand, a single chain antibodie, a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
In an embodiment, the viral vector achieves cell type specific expression. For example, a tissue-specific promoter can be constructed to restrict expression of the transgene (Cas 9 and gRNA) in only the target cell. The specificity of the vector can also be mediated by microRNA- dependent control of transgene expression. In an embodiment, the viral vector has increased efficiency of fusion of the viral vector and a target cell membrane. For example, a fusion protein such as fusion-competent hemagglutin (HA) can be incorporated to increase viral uptake into cells. In an embodiment, the viral vector has the ability of nuclear localization. For example, aviruse that requires the breakdown of the nuclear envelope (during cell division) and therefore will not infect a non-diving cell can be altered to incorporate a nuclear localization peptide in the matrix protein of the virus thereby enabling the transduction of non-proliferating cells.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a non-vector based method (e.g., using naked DNA or DNA complexes). For example, the DNA can be delivered, e.g., by organically modified silica or silicate (Ormosil), electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., 2012, Nano Lett 12: 6322-27), gene gun, sonoporation, magnetofection, lipid-mediated transfection, dendrimers, inorganic nanoparticles, calcium phosphates, or a combination thereof. In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9- and/or gRNA-encoding DNA in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9-and/or gRNA-encoding DNA in a vessel connected to a device (e.g,, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a combination of a vector and a non- vector based method. For example, a virosome comprises a liposome combined with an inactivated virus (e.g., HIV or influenza virus), which can result in more efficient gene transfer, e.g., in a respiratory epithelial cell than either a viral or a liposomal method alone.
In an embodiment, the delivery vehicle is a non- viral vector. In an embodiment, the non- viral vector is an inorganic nanoparticle. Exemplary inorganic nanoparticles include, e.g., magnetic nanoparticles (e.g., Fe3Mn02) silica The outer surface of the nanoparticle can be conjugated with a positively charged polymer (e.g., polyethylenimine, polylysine, polyserine) which allows for attachment (e.g., conjugation or entrapment) of payload.. In an embodiment, the non-viral vector is an organic nanoparticle (e.g., entrapment of the payload inside the nanoparticle). Exemplary organic nanoparticles include, e.g., SNALP liposomes that contain cationic lipids together with neutral helper lipids which are coated with polyethylene glycol (PEG) and protamine and nucleic acid complex coated with lipid coating.
Exemplary lipids for gene transfer are shown below in Table 29.
Table 29. Lipids Used for Gene Transfer
Figure imgf000619_0001
propanaminium trifluoroacetate
l ,2-Dioleyl-3-trimethylammonium-propane DOPA Cationic
N-(2-Hydroxyethyl)-N,N-dimethyl-2,3-bis(tetradecyloxy)-l - MDRIE Cationic propanaminium bromide
Dimyristooxypropyl dimethyl hydroxyethyl ammonium bromide DMRI Cationic
3 β- [N-(N' , N' -Dimethylaminoethane) -carbamoyl] cholesterol DC-Choi Cationic
Bis-guanidium-tren-cholesterol BGTC Cationic l ,3-Diodeoxy-2-(6-carboxy-spermyl)-propylamide DOSPER Cationic
Dimethyloctadecylammonium bromide DDAB Cationic
Dioctadecylamidoglicylspermidin DSL Cationic rac-[(2,3-Dioctadecyloxypropyl)(2-hydroxyethyl)]-dimethylammonium CLIP-1 Cationic chloride
rac-[2(2,3-Dihexadecyloxypropyl- CLIP-6 Cationic oxymethyloxy)ethyl]trimethylammonium bromide
Ethyldimyristoylphosphatidylcholine EDMPC Cationic l ,2-Distearyloxy-N,N-dimethyl-3-aminopropane DSDMA Cationic
1 ,2-Dimyristoyl-trimethylammonium propane DMTAP Cationic
Ο, Ο '-Dimyristyl-N-lysyl aspartate DMKE Cationic l ,2-Distearoyl-sn-glycero-3-ethylphosphocholine DSEPC Cationic
N-Palmitoyl D-erythro-sphingosyl carbamoyl-spermine CCS Cationic
N-i-Butyl-N0-tetradecyl-3-tetradecylaminopropionamidine diC14-amidine Cationic
Octadecenolyoxy[ethyl-2-heptadecenyl-3 hydroxyethyl] imidazolinium DOTIM Cationic chloride
Nl -Cholesteryloxycarbonyl-3 ,7-diazanonane- 1 ,9-diamine CDAN Cationic
2-(3-[Bis(3-amino-propyl)-amino]propylamino)-N- RPR209120 Cationic ditetradecylcarbamoylme-ethyl-acetamide
1 ,2-dilinoleyloxy-3- dimethylaminopropane DLinDMA Cationic
2,2-dilinoleyl-4-dimethylaminoethyl-[ 1 ,3] - dioxolane DLin-KC2-DMA Cationic dilinoleyl- methyl -4-dimethylaminobutyrate DLin-MC3 -DMA Cationic
Exemplary polymers for gene transfer are shown below in Table 30.
Table 30. Polymers Used for Gene Transfer
Polymer Abbreviation
Poly(ethylene)glycol PEG
Polyethylenimine PEI
Dithiobis(succinimidylpropionate) DSP
Dimethyl-3 ,3 ' -dithiobispropionimidate DTBP
Poly(ethylene imine) biscarbamate PEIC
Poly(L-lysine) PLL
Histidine modified PLL
Poly(N-vinylpyrrolidone) PVP
Poly(propylenimine) PPI
Poly(amidoamine) PAMAM
Poly(amido ethylenimine) SS-PAEI
Triethylenetetramine TETA
Poly(P-aminoester)
Poly(4-hydroxy-L-proline ester) PHP
Poly(allylamine) Poly(a-[4-aminobutyl]-L-glycolic acid) PAGA
Poly(D,L-lactic-co-glycolic acid) PLGA
Poly(N-ethyl-4-vinylpyridinium bromide)
Poly(phosphazene)s PPZ
Poly (phosphoester) s PPE
Poly(phosphoramidate)s PPA
Poly(N-2-hydroxypropylmethacrylamide) pHPMA
Poly (2-(dimethylamino)ethyl methacrylate) pDMAEMA
Poly(2-aminoethyl propylene phosphate) PPE-EA
Chitosan
Galactosylated chitosan
N-Dodacylated chitosan
Histone
Collagen
Dextran-spermine D-SPM
In an embodiment, the vehicle has targeting modifications to increase target cell update of nanoparticles and liposomes, e.g., cell specific antigens, monoclonal antibodies, single chain antibodies, aptamers, polymers, sugars, and cell penetrating peptides. In an embodiment, the vehicle uses fusogenic and endosome-destabilizing peptides/polymers. In an embodiment, the vehicle undergoes acid-triggered conformational changes (e.g., to accelerate endosomal escape of the cargo). In an embodiment, a stimuli-cleavable polymer is used, e.g., for release in a cellular compartment. For example, disulfide-based cationic polymers that are cleaved in the reducing cellular environment can be used.
In an embodiment, the delivery vehicle is a biological non-viral delivery vehicle. In an embodiment, the vehicle is an attenuated bacterium (e.g., naturally or artificially engineered to be invasive but attenuated to prevent pathogenesis and expressing the transgene (e.g., Listeria monocytogenes, certain Salmonella strains, Bifidobacterium longum, and modified Escherichia coli), bacteria having nutritional and tissue-specific tropism to target specific tissues, bacteria having modified surface proteins to alter target tissue specificity). In an embodiment, the vehicle is a genetically modified bacteriophage (e.g., engineered phages having large packaging capacity, less immunogenic, containing mammalian plasmid maintenance sequences and having incorporated targeting ligands). In an embodiment, the vehicle is a mammalian virus-like particle. For example, modified viral particles can be generated (e.g., by purification of the "empty" particles followed by ex vivo assembly of the virus with the desired cargo). The vehicle can also be engineered to incorporate targeting ligands to alter target tissue specificity. In an embodiment, the vehicle is a biological liposome. For example, the biological liposome is a phospholipid-based particle derived from human cells (e.g., erythrocyte ghosts, which are red blood cells broken down into spherical structures derived from the subject (e.g., tissue targeting can be achieved by attachment of various tissue or cell-specific ligands), or secretory exosomes - subject (i.e., patient) derived membrane-bound nanovescicle (30 -100 nm) of endocytic origin (e.g., can be produced from various cell types and can therefore be taken up by cells without the need of for targeting ligands).
In an embodiment, one or more nucleic acid molecules (e.g., DNA molecules) other than the components of a Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component described herein, are delivered. In an embodiment, the nucleic acid molecule is delivered at the same time as one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered before or after (e.g., less than about 30 minutes, 1 hour, 2 hours, 3 hours, 6 hours, 9 hours, 12 hours, 1 day, 2 days, 3 days, 1 week, 2 weeks, or 4 weeks) one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered by a different means than one or more of the components of the Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component, are delivered. The nucleic acid molecule can be delivered by any of the delivery methods described herein. For example, the nucleic acid molecule can be delivered by a viral vector, e.g., an integration-deficient lentivirus, and the Cas9 molecule component and/or the gRNA molecule component can be delivered by electroporation, e.g., such that the toxicity caused by nucleic acids (e.g., DNAs) can be reduced. In an embodiment, the nucleic acid molecule encodes a therapeutic protein, e.g., a protein described herein. In an embodiment, the nucleic acid molecule encodes an RNA molecule, e.g., an RNA molecule described herein.
Delivery of RNA encoding a Cas9 molecule
RNA encoding Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) and/or gRNA molecules, can be delivered into cells, e.g., target cells described herein, by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding RNA can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., 2012, Nano Lett 12: 6322-27), lipid-mediated transfection, peptide-mediated delivery, or a combination thereof. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
In an embodiment, delivery via electroporation comprises mixing the cells with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules in a vessel connected to a device (e.g., a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel.
Delivery Cas9 molecule protein
Cas9 molecules (e.g., eaCas9 molecules or eiCas9 molecules) can be delivered into cells by art-known methods or as described herein. For example, Cas9 protein molecules can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al, 2012, Nano Lett 12: 6322-27), lipid-mediated transfection, peptide- mediated delivery, or a combination thereof. Delivery can be accompanied by DNA encoding a gRNA or by a gRNA. Cas9 protein can be conjugated to molecules promoting uptake by the target cells (e.g., target cells described herein).
In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) with or without gRNA molecules in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) with or without gRNA molecules in a vessel connected to a device (e.g., a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Route of Administration
Systemic modes of administration include oral and parenteral routes. Parenteral routes include, by way of example, intravenous, intrarterial, intraosseous, intramuscular, intradermal, subcutaneous, intranasal and intraperitoneal routes. Components administered systemically may be modified or formulated to target the components to cells of the blood and bone marrow.
Local modes of administration include, by way of example, intra-bone marrow, intrathecal, and intra-cerebroventricular routes. In an embodiment, significantly smaller amounts of the components (compared with systemic approaches) may exert an effect when administered locally (for example, intra-bone marrow) compared to when administered systemically (for example, intravenously). Local modes of administration can reduce or eliminate the incidence of potentially toxic side effects that may occur when therapeutically effective amounts of a component are administered systemically.
In an embodiment, components described herein are delivered by intra-bone marrow injection. Injections may be made directly into the bone marrow compartment of one or more than one bone. In an embodiment, nanoparticle or viral, e.g., AAV vector, delivery is via intra- bone marrow injection.
Administration may be provided as a periodic bolus or as continuous infusion from an internal reservoir or from an external reservoir (for example, from an intravenous bag).
Components may be administered locally, for example, by continuous release from a sustained release drug delivery device
In addition, components may be formulated to permit release over a prolonged period of time. A release system can include a matrix of a biodegradable material or a material which releases the incorporated components by diffusion. The components can be homogeneously or heterogeneously distributed within the release system. A variety of release systems may be useful, however, the choice of the appropriate system will depend upon rate of release required by a particular application. Both non-degradable and degradable release systems can be used. Suitable release systems include polymers and polymeric matrices, non-polymeric matrices, or inorganic and organic excipients and diluents such as, but not limited to, calcium carbonate and sugar (for example, trehalose). Release systems may be natural or synthetic. However, synthetic release systems are preferred because generally they are more reliable, more reproducible and produce more defined release profiles. The release system material can be selected so that components having different molecular weights are released by diffusion through or degradation of the material.
Representative synthetic, biodegradable polymers include, for example: polyamides such as poly(amino acids) and poly(peptides); polyesters such as poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), and poly(caprolactone); poly(anhydrides); polyorthoesters;
polycarbonates; and chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof. Representative synthetic, non- degradable polymers include, for example: polyethers such as poly(ethylene oxide),
poly(ethylene glycol), and poly(tetramethylene oxide); vinyl polymers-polyacrylates and polymethacrylates such as methyl, ethyl, other alkyl, hydroxyethyl methacrylate, acrylic and methacrylic acids, and others such as poly(vinyl alcohol), poly(vinyl pyrolidone), and poly(vinyl acetate); poly(urethanes); cellulose and its derivatives such as alkyl, hydroxyalkyl, ethers, esters, nitrocellulose, and various cellulose acetates; polysiloxanes; and any chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof.
Poly(lactide-co-glycolide) microsphere can also be used for injection. Typically the microspheres are composed of a polymer of lactic acid and glycolic acid, which are structured to form hollow spheres. The spheres can be approximately 15-30 microns in diameter and can be loaded with components described herein.
Bi-Modal or Differential Delivery of Components
Separate delivery of the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, and more particularly, delivery of the components by differing modes, can enhance performance, e.g., by improving tissue specificity and safety.
In an embodiment, the Cas9 molecule and the gRNA molecule are delivered by different modes, or as sometimes referred to herein as differential modes. Different or differential modes, as used herein, refer modes of delivery that confer different pharmacodynamic or
pharmacokinetic properties on the subject component molecule, e.g., a Cas9 molecule, or gRNA molecule,. For example, the modes of delivery can result in different tissue distribution, different half-life, or different temporal distribution, e.g., in a selected compartment, tissue, or organ.
Some modes of delivery, e.g., delivery by a nucleic acid vector that persists in a cell, or in progeny of a cell, e.g., by autonomous replication or insertion into cellular nucleic acid, result in more persistent expression of and presence of a component. Examples include viral, e.g., adeno- associated virus or lentivirus, delivery.
By way of example, the components, e.g., a Cas9 molecule and a gRNA molecule, can be delivered by modes that differ in terms of resulting half-life or persistent of the delivered component the body, or in a particular compartment, tissue or organ. In an embodiment, a gRNA molecule can be delivered by such modes. The Cas9 molecule component can be delivered by a mode which results in less persistence or less exposure to the body or a particular compartment or tissue or organ.
More generally, in an embodiment, a first mode of delivery is used to deliver a first component and a second mode of delivery is used to deliver a second component. The first mode of delivery confers a first pharmacodynamic or pharmacokinetic property. The first pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ. The second mode of delivery confers a second pharmacodynamic or pharmacokinetic property. The second pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ.
In an embodiment, the first pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure, is more limited than the second pharmacodynamic or pharmacokinetic property.
In an embodiment, the first mode of delivery is selected to optimize, e.g., minimize, a pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the second mode of delivery is selected to optimize, e.g., maximize, a pharmacodynamic or pharmcokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the first mode of delivery comprises the use of a relatively persistent element, e.g., a nucleic acid, e.g., a plasmid or viral vector, e.g., an AAV or lentivirus. As such vectors are relatively persistent product transcribed from them would be relatively persistent. In an embodiment, the second mode of delivery comprises a relatively transient element, e.g., an RNA or protein.
In an embodiment, the first component comprises gRNA, and the delivery mode is relatively persistent, e.g., the gRNA is transcribed from a plasmid or viral vector, e.g., an AAV or lenti virus. Transcription of these genes would be of little physiological consequence because the genes do not encode for a protein product, and the gRNAs are incapable of acting in isolation. The second component, a Cas9 molecule, is delivered in a transient manner, for example as mRNA or as protein, ensuring that the full Cas9 molecule/gRNA molecule complex is only present and active for a short period of time.
Furthermore, the components can be delivered in different molecular form or with different delivery vectors that complement one another to enhance safety and tissue specificity.
Use of differential delivery modes can enhance performance, safety and efficacy. E.g., the likelihood of an eventual off-target modification can be reduced. Delivery of immunogenic components, e.g., Cas9 molecules, by less persistent modes can reduce immunogenicity, as peptides from the bacterially-derived Cas enzyme are displayed on the surface of the cell by MHC molecules. A two-part delivery system can alleviate these drawbacks.
Differential delivery modes can be used to deliver components to different, but overlapping target regions. The formation active complex is minimized outside the overlap of the target regions. Thus, in an embodiment, a first component, e.g., a gRNA molecule is delivered by a first delivery mode that results in a first spatial, e.g., tissue, distribution. A second component, e.g., a Cas9 molecule is delivered by a second delivery mode that results in a second spatial, e.g., tissue, distribution. In an embodiment, the first mode comprises a first element selected from a liposome, nanoparticle, e.g., polymeric nanoparticle, and a nucleic acid, e.g., viral vector. The second mode comprises a second element selected from the group. In an embodiment, the first mode of delivery comprises a first targeting element, e.g., a cell specific receptor or an antibody, and the second mode of delivery does not include that element. In embodiment, the second mode of delivery comprises a second targeting element, e.g., a second cell specific receptor or second antibody.
When the Cas9 molecule is delivered in a virus delivery vector, a liposome, or polymeric nanoparticle, there is the potential for delivery to and therapeutic activity in multiple tissues, when it may be desirable to only target a single tissue. A two-part delivery system can resolve this challenge and enhance tissue specificity. If the gRNA molecule and the Cas9 molecule are packaged in separated delivery vehicles with distinct but overlapping tissue tropism, the fully functional complex is only be formed in the tissue that is targeted by both vectors. Ex vivo delivery
In an embodiment, components described in Table 27 are introduced into cells which are then introduced into the subject, e.g., cells are removed from a subject, manipulated ex vivo and then introduced into the subject. Methods of introducing the components can include, e.g., any of the delivery methods described in Table 28.
VIII. Modified Nucleosides, Nucleotides, and Nucleic Acids
Modified nucleosides and modified nucleotides can be present in nucleic acids, e.g., particularly gRNA, but also other forms of RNA, e.g., mRNA, RNAi, or siRNA. As described herein, "nucleoside" is defined as a compound containing a five-carbon sugar molecule (a pentose or ribose) or derivative thereof, and an organic base, purine or pyrimidine, or a derivative thereof. As described herein, "nucleotide" is defined as a nucleoside further comprising a phosphate group.
Modified nucleosides and nucleotides can include one or more of:
(i) alteration, e.g., replacement, of one or both of the non-linking phosphate oxygens and/or of one or more of the linking phosphate oxygens in the phosphodiester backbone linkage;
(ii) alteration, e.g., replacement, of a constituent of the ribose sugar, e.g., of the 2' hydroxyl on the ribose sugar;
(iii) wholesale replacement of the phosphate moiety with "dephospho" linkers;
(iv) modification or replacement of a naturally occurring nucleobase;
(v) replacement or modification of the ribose-phosphate backbone;
(vi) modification of the 3' end or 5' end of the oligonucleotide, e.g., removal, modification or replacement of a terminal phosphate group or conjugation of a moiety; and
(vii) modification of the sugar.
The modifications listed above can be combined to provide modified nucleosides and nucleotides that can have two, three, four, or more modifications. For example, a modified nucleoside or nucleotide can have a modified sugar and a modified nucleobase. In an embodiment, every base of a gRNA is modified, e.g., all bases have a modified phosphate group, e.g., all are phosphorothioate groups. In an embodiment, all, or substantially all, of the phosphate groups of a unimolecular or modular gRNA molecule are replaced with
phosphorothioate groups.
In an embodiment, modified nucleotides, e.g., nucleotides having modifications as described herein, can be incorporated into a nucleic acid, e.g., a "modified nucleic acid." In an embodiment, the modified nucleic acids comprise one, two, three or more modified nucleotides. In an embodiment, at least 5% (e.g., at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, or about 100%) of the positions in a modified nucleic acid are a modified nucleotides.
Unmodified nucleic acids can be prone to degradation by, e.g., cellular nucleases. For example, nucleases can hydrolyze nucleic acid phosphodiester bonds. Accordingly, in one aspect the modified nucleic acids described herein can contain one or more modified nucleosides or nucleotides, e.g., to introduce stability toward nucleases.
In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo. The term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can disrupt binding of a major groove interacting partner with the nucleic acid. In an embodiment, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo, and also disrupt binding of a major groove interacting partner with the nucleic acid. Definitions of Chemical Groups
As used herein, "alkyl" is meant to refer to a saturated hydrocarbon group which is straight-chained or branched. Example alkyl groups include methyl (Me), ethyl (Et), propyl (e.g. , n-propyl and isopropyl), butyl (e.g. , n-butyl, isobutyl, t-butyl), pentyl (e.g. , n-pentyl, isopentyl, neopentyl), and the like. An alkyl group can contain from 1 to about 20, from 2 to about 20, from 1 to about 12, from 1 to about 8, from 1 to about 6, from 1 to about 4, or from 1 to about 3 carbon atoms.
As used herein, "aryl" refers to monocyclic or polycyclic (e.g. , having 2, 3 or 4 fused rings) aromatic hydrocarbons such as, for example, phenyl, naphthyl, anthracenyl,
phenanthrenyl, indanyl, indenyl, and the like. In an embodiment, aryl groups have from 6 to about 20 carbon atoms.
As used herein, "alkenyl" refers to an aliphatic group containing at least one double bond. As used herein, "alkynyl" refers to a straight or branched hydrocarbon chain containing 2-12 carbon atoms and characterized in having one or more triple bonds. Examples of alkynyl groups include, but are not limited to, ethynyl, propargyl, and 3-hexynyl.
As used herein, "arylalkyl" or "aralkyl" refers to an alkyl moiety in which an alkyl hydrogen atom is replaced by an aryl group. Aralkyl includes groups in which more than one hydrogen atom has been replaced by an aryl group. Examples of "arylalkyl" or "aralkyl" include benzyl, 2-phenylethyl, 3-phenylpropyl, 9-fluorenyl, benzhydryl, and trityl groups.
As used herein, "cycloalkyl" refers to a cyclic, bicyclic, tricyclic, or polycyclic non- aromatic hydrocarbon groups having 3 to 12 carbons. Examples of cycloalkyl moieties include, but are not limited to, cyclopropyl, cyclopentyl, and cyclohexyl.
As used herein, "heterocyclyl" refers to a monovalent radical of a heterocyclic ring system. Representative heterocyclyls include, without limitation, tetrahydrofuranyl,
tetrahydrothienyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, pyrrolinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, and morpholinyl.
As used herein, "heteroaryl" refers to a monovalent radical of a heteroaromatic ring system. Examples of heteroaryl moieties include, but are not limited to, imidazolyl, oxazolyl, thiazolyl, triazolyl, pyrrolyl, furanyl, indolyl, thiophenyl pyrazolyl, pyridinyl, pyrazinyl, pyridazinyl, pyrimidinyl, indolizinyl, purinyl, naphthyridinyl, quinolyl, and pteridinyl. Phosphate Backbone Modifications
The Phosphate Group
In an embodiment, the phosphate group of a modified nucleotide can be modified by replacing one or more of the oxygens with a different substituent. Further, the modified nucleotide, e.g., modified nucleotide present in a modified nucleic acid, can include the wholesale replacement of an unmodified phosphate moiety with a modified phosphate as described herein. In an embodiment, the modification of the phosphate backbone can include alterations that result in either an uncharged linker or a charged linker with unsymmetrical charge distribution.
Examples of modified phosphate groups include, phosphorothioate, phosphoroselenates, borano phosphates, borano phosphate esters, hydrogen phosphonates, phosphoroamidates, alkyl or aryl phosphonates and phosphotriesters. In an embodiment, one of the non-bridging phosphate oxygen atoms in the phosphate backbone moiety can be replaced by any of the following groups: sulfur (S), selenium (Se), BR3 (wherein R can be, e.g., hydrogen, alkyl, or aryl), C (e.g., an alkyl group, an aryl group, and the like), H, NR2 (wherein R can be, e.g., hydrogen, alkyl, or aryl), or OR (wherein R can be, e.g., alkyl or aryl). The phosphorous atom in an unmodified phosphate group is achiral. However, replacement of one of the non-bridging oxygens with one of the above atoms or groups of atoms can render the phosphorous atom chiral; that is to say that a phosphorous atom in a phosphate group modified in this way is a stereogenic center. The stereogenic phosphorous atom can possess either the "R" configuration (herein Rp) or the "S" configuration (herein Sp).
Phosphorodithioates have both non-bridging oxygens replaced by sulfur. The phosphorus center in the phosphorodithioates is achiral which precludes the formation of oligoribonucleotide diastereomers. In an embodiment, modifications to one or both non-bridging oxygens can also include the replacement of the non-bridging oxygens with a group independently selected from S, Se, B, C, H, N, and OR (R can be, e.g., alkyl or aryl).
The phosphate linker can also be modified by replacement of a bridging oxygen, (i.e., the oxygen that links the phosphate to the nucleoside), with nitrogen (bridged phosphoroamidates), sulfur (bridged phosphorothioates) and carbon (bridged methylenephosphonates). The replacement can occur at either linking oxygen or at both of the linking oxygens.
Replacement of the Phosphate Group The phosphate group can be replaced by non-phosphorus containing connectors. In an embodiment, the charge phosphate group can be replaced by a neutral moiety.
Examples of moieties which can replace the phosphate group can include, without limitation, e.g., methyl phosphonate, hydroxylamino, siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo,
methylenedimethylhydrazo and methyleneoxymethylimino.
Replacement of the Ribophosphate Backbone
Scaffolds that can mimic nucleic acids can also be constructed wherein the phosphate linker and ribose sugar are replaced by nuclease resistant nucleoside or nucleotide surrogates. In an embodiment, the nucleobases can be tethered by a surrogate backbone. Examples can include, without limitation, the morpholino, cyclobutyl, pyrrolidine and peptide nucleic acid (PNA) nucleoside surrogates.
Sugar Modifications
The modified nucleosides and modified nucleotides can include one or more
modifications to the sugar group. For example, the 2' hydroxyl group (OH) can be modified or replaced with a number of different "oxy" or "deoxy" substituents. In an embodiment, modifications to the 2' hydroxyl group can enhance the stability of the nucleic acid since the hydroxyl can no longer be deprotonated to form a 2'-alkoxide ion. The 2'-alkoxide can catalyze degradation by intramolecular nucleophilic attack on the linker phosphorus atom.
Examples of "oxy"-2' hydroxyl group modifications can include alkoxy or aryloxy (OR, wherein "R" can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or a sugar);
polyethyleneglycols (PEG), 0(CH2CH20)nCH2CH2OR wherein R can be, e.g., H or optionally substituted alkyl, and n can be an integer from 0 to 20 (e.g., from 0 to 4, from 0 to 8, from 0 to 10, from 0 to 16, from 1 to 4, from 1 to 8, from 1 to 10, from 1 to 16, from 1 to 20, from 2 to 4, from 2 to 8, from 2 to 10, from 2 to 16, from 2 to 20, from 4 to 8, from 4 to 10, from 4 to 16, and from 4 to 20). In an embodiment, the "oxy"-2' hydroxyl group modification can include
"locked" nucleic acids (LNA) in which the 2' hydroxyl can be connected, e.g., by a C1-6 alkylene or Ci-6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy, 0(CH2)n-amino, (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino). In an embodiment, the "oxy"-2' hydroxyl group modification can include the methoxyethyl group (MOE),
(OCH2CH2OCH3, e.g., a PEG derivative).
"Deoxy" modifications can include hydrogen (i.e. deoxyribose sugars, e.g., at the overhang portions of partially ds RNA); halo (e.g., bromo, chloro, fluoro, or iodo); amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); NH(CH2CH2NH)nCH2CH2- amino (wherein amino can be, e.g., as described herein), -NHC(0)R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), cyano; mercapto; alkyl-thio-alkyl;
thioalkoxy; and alkyl, cycloalkyl, aryl, alkenyl and alkynyl, which may be optionally substituted with e.g., an amino as described herein.
The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified nucleic acid can include nucleotides containing e.g., arabinose, as the sugar. The nucleotide "monomer" can have an alpha linkage at the position on the sugar, e.g., alpha-nucleosides. The modified nucleic acids can also include "abasic" sugars, which lack a nucleobase at C- . These abasic sugars can also be further modified at one or more of the constituent sugar atoms. The modified nucleic acids can also include one or more sugars that are in the L form, e.g. L- nucleosides.
Generally, RNA includes the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified nucleosides and modified nucleotides can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). In an embodiment, the modified nucleotides can include multicyclic forms (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl-(3'→2')). Modifications on the Nucleobase
The modified nucleosides and modified nucleotides described herein, which can be incorporated into a modified nucleic acid, can include a modified nucleobase. Examples of nucleobases include, but are not limited to, adenine (A), guanine (G), cytosine (C), and uracil (U). These nucleobases can be modified or wholly replaced to provide modified nucleosides and modified nucleotides that can be incorporated into modified nucleic acids. The nucleobase of the nucleotide can be independently selected from a purine, a pyrimidine, a purine or pyrimidine analog. In an embodiment, the nucleobase can include, for example, naturally-occurring and synthetic derivatives of a base.
Uracil
In an embodiment, the modified nucleobase is a modified uracil. Exemplary nucleobases and nucleosides having a modified uracil include without limitation pseudouridine (ψ), pyridin- 4-one ribonucleoside, 5-aza-uridine, 6-aza-uridine, 2-thio-5-aza-uridine, 2-thio-uridine (s2U), 4- thio-uridine (s4U), 4-thio-pseudouridine, 2-thio-pseudouridine, 5 -hydroxy-uridine (ho5U), 5- aminoallyl-uridine, 5-halo-uridine (e.g., 5-iodo-uridine or 5-bromo-uridine), 3-methyl-uridine
3 5 5
(m U), 5-methoxy-uridine (mo U), uridine 5-oxyacetic acid (cmo U), uridine 5-oxyacetic acid methyl ester (mcmo5U), 5-carboxymethyl-uridine (cm5U), 1-carboxymethyl-pseudouridine, 5- carboxyhydroxymethyl-uridine (chm5U), 5-carboxyhydroxymethyl-uridine methyl ester
(mchm5U), 5-methoxycarbonylmethyl-uridine (mcm5U), 5-methoxycarbonylmethyl-2-thio- uridine (mcm5s2U), 5-aminomethyl-2-thio-uridine (nm5s2U), 5-methylaminomethyl-uridine (mnm5U), 5-methylaminomethyl-2-thio-uridine (mnm5s2U), 5-methylaminomethyl-2-seleno-
5 2 5
uridine (mnm se U), 5-carbamoylmethyl-uridine (ncm U), 5-carboxymethylaminomethyl-uridine (cmnm5U), 5-carboxymethylaminomethyl-2-thio-uridine (cmnm 5s2U), 5-propynyl-uridine, 1- propynyl-pseudouridine, 5-taurinomethyl-uridine (xcm5U), 1-taurinomethyl -pseudouridine, 5- taurinomethyl-2-thio-uridine(Tm5s2U), 1 -taurinomethyl-4-thio-pseudouridine, 5-methyl-uridine (m5U, i.e., having the nucleobase deoxythymine), 1-methyl-pseudouridine (ηι'ψ), 5-methyl-2- thio-uridine (m5s2U), l-methyl-4-thio-pseudouridine 4-thio- 1-methyl-pseudouridine, 3- methyl-pseudouridine (m ψ), 2-thio-l -methyl -pseudouridine, 1 -methyl- 1-deaza-pseudouridine, 2-thio-l -methyl- 1-deaza-pseudouridine, dihydrouridine (D), dihydropseudouridine, 5,6- dihydrouridine, 5-methyl-dihydrouridine (m5D), 2-thio-dihydrouridine, 2-thio- dihydropseudouridine, 2-methoxy-uridine, 2-methoxy-4-thio-uridine, 4-methoxy-pseudouridine,
4- methoxy-2-thio-pseudouridine, Nl -methyl-pseudouridine, 3-(3-amino-3- carboxypropyl)uridine (acp 3 U), l-methyl-3-(3-amino-3-carboxypropyl)pseudouridine (acp 3 ψ), 5- (isopentenylaminomethyl)uridine (inm5U), 5-(isopentenylaminomethyl)-2-thio-uridine
(inm5s2U), a-thio-uridine, 2'-0-methyl-uridine (Um), 5,2'-0-dimethyl-uridine (m5Um), 2'-0- methyl-pseudouridine (ψηι), 2-thio-2'-0-methyl-uridine (s2Um), 5-methoxycarbonylmethyl-2'- O-methyl-uridine (mem 5Um), 5-carbamoylmethyl-2'-0-methyl-uridine (ncm 5Um), 5- carboxymethylaminomethyl-2'-0-methyl-uridine (cmnm 5 Um), 3,2'-0-dimethyl-uridine (m 3 Um),
5- (isopentenylaminomethyl)-2'-0-methyl-uridine (inm5Um), 1-thio-uridine, deoxythymidine, 2'- F-ara-uridine, 2'-F-uridine, 2'-OH-ara-uridine, 5-(2-carbomethoxyvinyl) uridine, 5-[3-(l-E- propenylamino)uridine, pyrazolo[3,4-d]pyrimidines, xanthine, and hypoxanthine.
Cytosine
In an embodiment, the modified nucleobase is a modified cytosine. Exemplary nucleobases and nucleosides having a modified cytosine include without limitation 5-aza- cytidine, 6-aza-cytidine, pseudoisocytidine, 3-methyl-cytidine (m C), N4-acetyl-cytidine (act), 5- formyl-cytidine (f5C), N4-methyl-cytidine (m4C), 5-methyl-cytidine (m5C), 5-halo-cytidine (e.g., 5-iodo-cytidine), 5-hydroxymethyl-cytidine (hm5C), 1-methyl-pseudoisocytidine, pyrrolo- cytidine, pyrrolo-pseudoisocytidine, 2-thio-cytidine (s2C), 2-thio-5-methyl-cytidine, 4-thio- pseudoisocytidine, 4-thio- 1-methyl-pseudoisocytidine, 4-thio-l -methyl- 1-deaza- pseudoisocytidine, 1 -methyl- 1-deaza-pseudoisocytidine, zebularine, 5-aza-zebularine, 5-methyl- zebularine, 5-aza-2-thio-zebularine, 2-thio-zebularine, 2-methoxy-cytidine, 2-methoxy- 5 -methyl- cytidine, 4-methoxy-pseudoisocytidine, 4-methoxy- 1-methyl-pseudoisocytidine, lysidine (k C), a-thio-cytidine, 2'-0-methyl-cytidine (Cm), 5,2'-0-dimethyl-cytidine (m5Cm), N4-acetyl-2'-0- methyl-cytidine (ac4Cm), N4,2'-0-dimethyl-cytidine (m4Cm), 5-formyl-2'-0-methyl-cytidine (f 5Cm), N4,N4,2'-0-trimethyl-cytidine (m4 2Cm), 1-thio-cytidine, 2'-F-ara-cytidine, 2'-F-cytidine, and 2'-OH-ara-cytidine. Adenine
In an embodiment, the modified nucleobase is a modified adenine. Exemplary nucleobases and nucleosides having a modified adenine include without limitation 2-amino- purine, 2,6-diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo-purine (e.g., 6-chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenosine, 7-deaza-adenosine, 7- deaza-8-aza-adenosine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6- diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1 -methyl- adenosine (i A), 2-methyl- adenosine (m2A), N6-methyl-adenosine (m6A), 2-methylthio-N6-methyl-adenosine (ms2m6A), N6-isopentenyl-adenosine (i6A), 2-methylthio-N6-isopentenyl-adenosine (ms2i6A), N6-(cis- hydroxyisopentenyl)adenosine (io6A), 2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine
(ms2io6A), N6-glycinylcarbamoyl-adenosine (g6A), N6-threonylcarbamoyl-adenosine (t6A), N6- methyl-N6-threonylcarbamoyl-adenosine (m6t6A), 2-methylthio-N6-threonylcarbamoyl- adenosine (ms2g6A), N6,N6-dimethyl-adenosine (m6 2A), N6-hydroxynorvalylcarbamoyl- adenosine (hn6A), 2-methylthio-N6-hydroxynorvalylcarbamoyl-adenosine (ms2hn6A), N6- acetyl-adenosine (ac6A), 7-methyl-adenosine, 2-methylthio-adenosine, 2-methoxy- adenosine, a- thio-adenosine, 2'-0-methyl-adenosine (Am), N6,2'-0-dimethyl-adenosine (m6Am), N6-Methyl- 2'-deoxyadenosine, N6,N6,2'-0-trimethyl-adenosine (m6 2Am), l,2'-0-dimethyl-adenosine (i Am), 2'-0-ribosyladenosine (phosphate) (Ar(p)), 2-amino-N6-methyl -purine, 1-thio- adenosine, 8-azido-adenosine, 2'-F-ara-adenosine, 2'-F-adenosine, 2'-OH-ara-adenosine, and N6- (19- amino-pentaoxanonadecyl) - adeno sine .
Guanine
In an embodiment, the modified nucleobase is a modified guanine. Exemplary nucleobases and nucleosides having a modified guanine include without limitation inosine (I), 1- methyl-inosine (iVl), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW), hydroxy wybuto sine (OHyW), undermodified hydroxy wybuto sine (OHyW*), 7-deaza-guanosine, queuosine (Q),
epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl-queuosine (manQ), 7-cyano-7- deaza-guanosine (preQ0), 7-aminomethyl-7-deaza-guanosine (preQ , archaeosine (G+), 7-deaza- 8-aza-guanosine, 6-thio-guanosine, 6-thio-7-deaza-guanosine, 6-thio-7-deaza-8-aza-guanosine, 7-methyl-guanosine (m G), 6-thio-7-methyl-guanosine, 7-methyl-inosine, 6-methoxy-guanosine, l-methyl-guanosine (m'G), N2-methyl-guanosine (m 2 G), N2,N2-dimethyl-guanosine (m 2 2G), 2 2
N2,7-dimethyl-guanosine (m ,7G), N2, N2,7-dimethyl-guanosine (m ,2,7G), 8-oxo-guanosine, 7-methyl-8-oxo-guanosine, l-methyl-6-thio-guanosine, N2-methyl-6-thio-guanosine, N2,N2- dimethyl-6-thio-guanosine, a-thio-guanosine, 2'-0-methyl-guanosine (Gm), N2-methyl-2'-0-
2 2
methyl-guanosine (rri Gm), N2,N2-dimethyl-2'-0-methyl- guano sine (m 2Gm), l-methyl-2'-0- methyl-guanosine (m'Gm), N2,7-dimethyl-2'-0-methyl-guanosine (rri ,7Gm), 2'-0-methyl- inosine (Im), l,2'-0-dimethyl-inosine (m'lm), 06-phenyl-2'-deoxyinosine, 2'-0-ribosylguanosine (phosphate) (Gr(p)), 1-thio-guanosine, 06-methyl- guanosine, 06-Methyl-2'-deoxy guanosine, z - F-ara-guanosine, and 2'-F-guanosine. Exemplary Modified gRNAs
In some embodiments, the modified nucleic acids can be modified gRNAs. It is to be understood that any of the gRNAs described herein can be modified in accordance with this section, including any gRNA that comprises a targeting domain from Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A- 16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
As discussed above, transiently expressed or delivered nucleic acids can be prone to degradation by, e.g., cellular nucleases. Accordingly, in one aspect the modified gRNAs described herein can contain one or more modified nucleosides or nucleotides which introduce stability toward nucleases. While not wishing to be bound by theory it is also believed that certain modified gRNAs described herein can exhibit a reduced innate immune response when introduced into a population of cells, particularly the cells of the present invention. As noted above, the term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death.
While some of the exemplary modification discussed in this section may be included at any position within the gRNA sequence, in some embodiments, a gRNA comprises a modification at or near its 5' end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 5' end). In some embodiments, a gRNA comprises a modification at or near its 3' end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 3' end). In some embodiments, a gRNA comprises both a modification at or near its 5' end and a modification at or near its 3' end.
In an embodiment, the 5' end of a gRNA is modified by the inclusion of a eukaryotic mRNA cap structure or cap analog (e.g., a G(5 ')ppp(5 ')G cap analog, a m7G(5 ')ppp(5 ')G cap analog, or a 3 ' -0-Me-m7G(5 ' )ppp(5 ' )G anti reverse cap analog (ARCA)). The cap or cap analog can be included during either chemical synthesis or in vitro transcription of the gRNA.
In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group.
In an embodiment, the 3' end of a gRNA is modified by the addition of one or more (e.g., 25-200) adenine (A) residues. The polyA tract can be contained in the nucleic acid (e.g., plasmid, PCR product, viral genome) encoding the gRNA, or can be added to the gRNA during chemical synthesis, or following in vitro transcription using a polyadenosine polymerase (e.g., E. coli Poly(A)Polymerase).
In an embodiment, in vitro transcribed gRNA contains both a 5' cap structure or cap analog and a 3' polyA tract. In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group and comprises a 3' polyA tract.
In some embodiments, gRNAs can be modified at a 3' terminal U ribose. For example, the two terminal hydroxyl groups of the U ribose can be oxidized to aldehyde groups and a concomitant opening of the ribose ring to afford a modified nucleoside as shown below:
Figure imgf000638_0001
wherein "U" can be an unmodified or modified uridine.
In another embodiment, the 3' terminal U can be modified with a 2' 3' cyclic phosphate as shown below:
Figure imgf000638_0002
wherein "U" can be an unmodified or modified uridine.
In some embodiments, the gRNA molecules may contain 3' nucleotides which can be stabilized against degradation, e.g., by incorporating one or more of the modified nucleotides described herein. In this embodiment, e.g., uridines can be replaced with modified uridines, e.g., 5-(2-amino)propyl uridine, and 5-bromo uridine, or with any of the modified uridines described herein; adenosines and guanosines can be replaced with modified adenosines and guanosines, e.g., with modifications at the 8-position, e.g., 8-bromo guanosine, or with any of the modified adenosines or guanosines described herein.
In some embodiments, sugar-modified ribonucleotides can be incorporated into the gRNA, e.g., wherein the 2' OH-group is replaced by a group selected from H, -OR, -R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), halo, -SH, -SR (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); or cyano (-CN). In some embodiments, the phosphate backbone can be modified as described herein, e.g., with a phosphothioate group. In some embodiments, one or more of the nucleotides of the gRNA can each independently be a modified or unmodified nucleotide including, but not limited to 2' -sugar modified, such as, 2'-0-methyl, 2'-0-methoxyethyl, or 2'-Fluoro modified including, e.g., 2'-F or 2'-0-methyl, adenosine (A), 2'-F or 2'-0-methyl, cytidine (C), 2'-F or 2'-0-methyl, uridine (U), 2'-F or 2'-0-methyl, thymidine (T), 2'-F or 2'-0-methyl, guanosine (G), 2'-0-methoxyethyl-5-methyluridine (Teo), 2'-0-methoxyethyladenosine (Aeo), 2'-0-methoxyethyl-5-methylcytidine (m5Ceo), and any combinations thereof.
In some embodiments, a gRNA can include "locked" nucleic acids (LNA) in which the 2' OH-group can be connected, e.g., by a CI -6 alkylene or CI -6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy or 0(CH2)n-amino (wherein amino can be, e.g., NH2;
alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or
diheteroarylamino, ethylenediamine, or polyamino).
In some embodiments, a gRNA can include a modified nucleotide which is multicyclic (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S- GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), or threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl-(3'→2')). Generally, gRNA molecules include the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified gRNAs can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). Although the majority of sugar analog alterations are localized to the 2' position, other sites are amenable to modification, including the 4' position. In an embodiment, a gRNA comprises a 4'-S, 4'-Se or a 4'-C- aminomethyl-2' -O-Me modification.
In some embodiments, deaza nucleotides, e.g., 7-deaza-adenosine, can be incorporated into the gRNA. In some embodiments, O- and N-alkylated nucleotides, e.g., N6-methyl adenosine, can be incorporated into the gRNA. In some embodiments, one or more or all of the nucleotides in a gRNA molecule are deoxynucleotides. miRNA binding sites
microRNAs (or miRNAs) are naturally occurring cellular 19-25 nucleotide long noncoding RNAs. They bind to nucleic acid molecules having an appropriate miRNA binding site, e.g., in the 3' UTR of an mRNA, and down-regulate gene expression. While not wishing to be bound by theory it is believed that the down regulation is either by reducing nucleic acid molecule stability or by inhibiting translation. An RNA species disclosed herein, e.g., an mRNA encoding Cas9 can comprise an miRNA binding site, e.g., in its 3 'UTR. The miRNA binding site can be selected to promote down regulation of expression is a selected cell type. By way of example, the incorporation of a binding site for miR-122, a microRNA abundant in liver, can inhibit the expression of the gene of interest in the liver.
Governing gRNA molecules and the use thereof to limit the activity of a Cas9 system
Methods and compositions that use, or include, a nucleic acid, e.g., DNA, that encodes a Cas9 molecule or a gRNA molecule, can, in addition, use or include a "governing gRNA molecule." The governing gRNA can limit the activity of the other CRISPR/Cas components introduced into a cell or subject. In an embodiment, a gRNA molecule comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. In an embodiment, a governing gRNA molecule comprises a targeting domain that is
complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the BCL11A gene (a target gene gRNA); or on more than one nucleic acid that encodes a CRISPR/Cas component, e.g., both (a) and (b). The governing gRNA molecule can complex with the Cas9 molecule to inactivate a component of the system. In an embodiment, a Cas9
molecule/governing gRNA molecule complex inactivates a nucleic acid that comprises the sequence encoding the Cas9 molecule. In an embodiment, a Cas9 molecule/governing gRNA molecule complex inactivates the nucleic acid that comprises the sequence encoding a target gene gRNA molecule. In an embodiment, a Cas9 molecule/governing gRNA molecule complex places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a Cas9 molecule/governing gRNA molecule complex reduces off-target or other unwanted activity. In an embodiment, a governing gRNA molecule targets the coding sequence, or a control region, e.g., a promoter, for the CRISPR/Cas system component to be negatively regulated. For example, a governing gRNA can target the coding sequence for a Cas9 molecule, or a control region, e.g., a promoter, that regulates the expression of the Cas9 molecule coding sequence, or a sequence disposed between the two. In an embodiment, a governing gRNA molecule targets the coding sequence, or a control region, e.g., a promoter, for a target gene gRNA. In an embodiment, a governing gRNA, e.g., a Cas9- targeting or target gene gRNA-targeting, governing gRNA molecule, or a nucleic acid that encodes it, is introduced separately, e.g., later, than is the Cas9 molecule or a nucleic acid that encodes it. For example, a first vector, e.g., a viral vector, e.g., an AAV vector, can introduce nucleic acid encoding a Cas9 molecule and one or more target gene gRNA molecules, and a second vector, e.g., a viral vector, e.g., an AAV vector, can introduce nucleic acid encoding a governing gRNA molecule, e.g., a Cas9-targeting or target gene gRNA targeting, gRNA molecule. In an embodiment, the second vector can be introduced after the first. In another embodiment, a governing gRNA molecule, e.g., a Cas9-targeting or target gene gRNA targeting, governing gRNA molecule, or a nucleic acid that encodes it, can be introduced together, e.g., at the same time or in the same vector, with the Cas9 molecule or a nucleic acid that encodes it, but, e.g., under transcriptional control elements, e.g., a promoter or an enhancer, that are activated at a later time, e.g., such that after a period of time the transcription of Cas9 is reduced. In an embodiment, the transcriptional control element is activated intrinsically. In an embodiment, the transcriptional element is activated via the introduction of an external trigger.
Typically a nucleic acid sequence encoding a governing gRNA molecule, e.g., a Cas9- targeting gRNA molecule, is under the control of a different control region, e.g., promoter, than is the component it negatively modulates, e.g., a nucleic acid encoding a Cas9 molecule. In an embodiment, "different control region" refers to simply not being under the control of one control region, e.g., promoter, that is functionally coupled to both controlled sequences. In an embodiment, different refers to "different control region" in kind or type of control region. For example, the sequence encoding a governing gRNA molecule, e.g., a Cas9-targeting gRNA molecule, is under the control of a control region, e.g., a promoter, that has a lower level of expression, or is expressed later than the sequence which encodes is the component it negatively modulates, e.g., a nucleic acid encoding a Cas9 molecule.
By way of example, a sequence that encodes a governing gRNA molecule, e.g., a Cas9- targeting governing gRNA molecule, can be under the control of a control region (e.g., a promoter) described herein, e.g., human U6 small nuclear promoter, or human HI promoter. In an embodiment, a sequence that encodes the component it negatively regulates, e.g., a nucleic acid encoding a Cas9 molecule, can be under the control of a control region (e.g., a promoter) described herein, e.g., CMV, EF-la, MSCV, PGK, CAG promoters.
Examples
The following Examples are merely illustrative and are not intended to limit the scope or content of the invention in any way.
Example 1 : Cloning and Initial Screening of gRNAs
The suitability of candidate gRNAs can be evaluated as described in this example.
Although described for a chimeric gRNA, the approach can also be used to evaluate modular gRNAs.
Cloning gRNAs into Vectors For each gRNA, a pair of overlapping oligonucleotides is designed and obtained.
Oligonucleotides are annealed and ligated into a digested vector backbone containing an upstream U6 promoter and the remaining sequence of a long chimeric gRNA. Plasmid is sequence-verified and prepped to generate sufficient amounts of transfection-quality DNA. Alternate promoters maybe used to drive in vivo transcription (e.g. HI promoter) or for in vitro transcription (e.g., a T7 promoter).
Cloning gRNAs in linear dsDNA molecule (STITCHR)
For each gRNA, a single oligonucleotide is designed and obtained. The U6 promoter and the gRNA scaffold (e.g. including everything except the targeting domain, e.g., including sequences derived from the crRNA and tracrRNA, e.g., including a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain) are separately PCR amplified and purified as dsDNA molecules. The gRNA- specific oligonucleotide is used in a PCR reaction to stitch together the U6 and the gRNA scaffold, linked by the targeting domain specified in the oligonucleotide. Resulting dsDNA molecule (STITCHR product) is purified for transfection. Alternate promoters may be used to drive in vivo transcription (e.g., HI promoter) or for in vitro transcription (e.g., T7 promoter). Any gRNA scaffold may be used to create gRNAs compatible with Cas9s from any bacterial species.
Initial gRNA Screen
Each gRNA to be tested is transfected, along with a plasmid expressing Cas9 and a small amount of a GFP-expressing plasmid into human cells. In preliminary experiments, these cells can be immortalized human cell lines such as 293T, K562 or U20S. Alternatively, primary human cells may be used. In this case, cells may be relevant to the eventual therapeutic cell target (for example, an erythroid cell). The use of primary cells similar to the potential therapeutic target cell population may provide important information on gene targeting rates in the context of endogenous chromatin and gene expression.
Transfection may be performed using lipid transfection (such as Lipofectamine or Fugene) or by electroporation (such as Lonza Nucleofection). Following transfection, GFP expression can be determined either by fluorescence microscopy or by flow cytometry to confirm consistent and high levels of transfection. These preliminary transfections can comprise different gRNAs and different targeting approaches (17-mers, 20-mers, nuclease, dual-nickase, etc.) to determine which gRNAs/combinations of gRNAs give the greatest activity. Efficiency of cleavage with each gRNA may be assessed by measuring NHEJ-induced indel formation at the target locus by a T7El-type assay or by sequencing. Alternatively, other mismatch- sensitive enzymes, such as Cell/Surveyor nuclease, may also be used.
For the T7E1 assay, PCR amplicons are approximately 500-700bp with the intended cut site placed asymmetrically in the amplicon. Following amplification, purification and size- verification of PCR products, DNA is denatured and re-hybridized by heating to 95 °C and then slowly cooling. Hybridized PCR products are then digested with T7 Endonuclease I (or other mismatch- sensitive enzyme) which recognizes and cleaves non-perfectly matched DNA. If indels are present in the original template DNA, when the amplicons are denatured and re- annealed, this results in the hybridization of DNA strands harboring different indels and therefore lead to double- stranded DNA that is not perfectly matched. Digestion products may be visualized by gel electrophoresis or by capillary electrophoresis. The fraction of DNA that is cleaved (density of cleavage products divided by the density of cleaved and uncleaved) may be used to estimate a percent NHEJ using the following equation: %NHEJ = (1-(1 -fraction cleaved)'72). The T7E1 assay is sensitive down to about 2-5% NHEJ.
Sequencing may be used instead of, or in addition to, the T7E1 assay. For Sanger sequencing, purified PCR amplicons are cloned into a plasmid backbone, transformed, miniprepped and sequenced with a single primer. Sanger sequencing may be used for determining the exact nature of indels after determining the NHEJ rate by T7E1.
Sequencing may also be performed using next generation sequencing techniques. When using next generation sequencing, amplicons may be 300-500bp with the intended cut site placed asymmetrically. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low NHEJ rates.
Example 2: Assessment of Gene Targeting by NHEJ
The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation. Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency to generate the desired mutations (either knockout of a target gene or removal of a target sequence motif) may be determined by sequencing. For Sanger sequencing, PCR amplicons may be 500-700bp long. For next generation sequencing, PCR amplicons may be 300-500bp long. If the goal is to knockout gene function, sequencing may be used to assess what percent of alleles have undergone NHEJ- induced indels that result in a frameshift or large deletion or insertion that would be expected to destroy gene function. If the goal is to remove a specific sequence motif, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced deletions that span this sequence.
Example 3: Screening of gRNAs for Targeting BCL11A
In order to identify gRNAs with the highest on target NHEJ efficiency, thirty exemplary S. pyogenes gRNAs were selected for testing (Table 31). The gRNAs tested target three different regions of the BCLA11A locus - 5' of a red blood cell enhancer, 3' of a red blood cell enhancer and downstream of the ATG start codon in exon 2 (specified in Table 31).
Table 31
Figure imgf000645_0001
BCL11A-2997W GUAAGUAUUUUCUUUCAUUG 20 3' of enhancer 14458
BCL11A-2998W G U A A U U A AG A A AG C AG U G U A 20 5' of enhancer 14459
BCL11A-2999W GUAUUUUCUU UCAUUGG 17 3' of enhancer 14460
BCL11A-32W UGGCAUCCAGGUCACGCCAG 20 Exon 2 14461
BCL11A-40W GAUGCUUUUUUCAUCUCGAU 20 Exon 2 14462
BCL11A-30W GCAUCCAAUCCCGUGGAGGU 20 Exon 2 14463
BCL11A-42W UUUUCAUCUCGAUUGGUGAA 20 Exon 2 14464
BCL11A-24W CCAGAUGAACUUCCCAUUGG 20 Exon 2 14465
BCL11A-53W AGGAGGUCAUGAUCCCCUUC 20 Exon 2 14466
BCL11A-79W CAUCCAGGUCACGCCAG 17 Exon 2 14467
BCL11A-90W GCUUUUUUCAUCUCGAU 17 Exon 2 14468
BCL11A-77W UCCAAUCCCGUGGAGGU 17 Exon 2 14469
BCL11A-92W UCAUCUCGAU UGGUGAA 17 Exon 2 14470
BCL11A-71W GAUGAACUUCCCAUUGG 17 Exon 2 14471
A DNA template comprised of an exemplary gRNA (including the target region and the S. pyogenes TRACR sequence) under the control of a U6 promoter was generated by a PCR StitchR reaction. This DNA template was subsequently transfected into 293 cells using
Lipofectamine 3000 along with a DNA plasmid encoding the S. pyogenes Cas9 downstream of a CMV promoter. Genomic DNA was isolated from the cells 48-72 hours post transfection. To determine the rate of modification at the BCL11A locus, the target region was amplified using a locus PCR with the primers listed in Table 32.
Table 32
Figure imgf000646_0001
After PCR amplification, a T7E1 -directed mismatch cleavage assay was performed on the PCR product. Briefly, this assay involves melting the PCR product followed by a re- annealing step. If gene modification has occurred, there will exist double stranded products that are not perfect matches due to some frequency of insertions or deletions. These double stranded products are sensitive to cleavage by a T7 endonuclease 1 enzyme at the site of mismatch. Therefore, the efficiency of cutting by the Cas9/gRNA complex was determined by analyzing the amount of T7E1 cleavage. The formula that was used to provide a measure of % NHEJ from the T7E1 cutting is the following: 100*(l-(l-(fraction cleaved))A0.5). The results of this analysis are shown in Fig. 11. The top performing gRNAs in this assay were BCLl 1A-2981, BCLl 1A-2983, BCLl 1 A-2995, BCLl 1 A-32, BCLl 1 A-30, and BCLl 1 A-71.
Example 4: Deletion of the Erythroid Enhancer Elements Using Two gRNAs Flanking the Sequence
In order to test whether the erythroid enhancer sequence can be deleted using a two gRNA approach, two pairs of gRNA primers were tested in 293 cells. Pair number 1 comprised BCLl 1A-2983W and BCLl 1A-2981W while Pair number 2 comprised BCLl 1A-2995W and BCLl 1 A-2984W. In this example, a plasmid encoding S. pyogenes Cas9 downstream of a CMV promoter was delivered with either gRNA pair 1 or gRNA pair 2. The gRNAs were delivered as separate STITCHR products with each template comprising the U6 promoter, gRNA target sequence and S. pyogenes TRACR sequence. The DNA templates were delivered to 293 cells using lipid transfection (Lipofectamine 3000, Life Technologies). 72 hours post transfection, the cells were harvested and gDNA was isolated. To detect the deletion of the enhancer region of BCLl 1 A, PCR primers flanking the enhancer sequences were used to amplify the deletion event. The PCR product was TOPO cloned and sequenced by Sanger sequencing. The results of these analyses are presented in Fig. 12A-13B. As shown in Fig. 12A-13B, the deletion for both gRNA pairs that were delivered to the 293 cells were detected.
Incorporation by Reference
All publications, patents, and patent applications mentioned herein are hereby incorporated by reference in their entirety as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
Equivalents
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

Claims

Other embodiments are within the following claims. What is claimed is:
1. A gRNA molecule comprising a targeting domain which is complementary with a target domain from the BCL11A gene.
2. The gRNA molecule of claim 1, wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of a BT target knockout position.
3. The gRNA molecule of claim 1 or 2, wherein said targeting domain is configured to
target an early coding region or an enhancer region of the BCL11A gene.
4. The gRNA molecule of claim 1, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
5. The gRNA molecule of any of claims 1, 2, or 4, wherein said targeting domain is
configured to target the promoter region of the BCL11A gene.
6. The gRNA molecule of any of claims 1-5, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A- 16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
7. The gRNA molecule of any of claims 1-5, wherein said targeting domain comprises or consists of a sequence that is the same as a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A- 12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
8. The gRNA molecule of claim 1-3, 6, or 7, wherein said targeting domain is selected from those in Tables 1A-1F, 3A-3E, 4A-4E, 5A-5B, 12A-12D, 13A-13E, or 14A-14B.
9. The gRNA molecule of claim 1-3, 6, or 7, wherein said targeting domain is selected from those in Tables 6A-6D, 7A-7D, 8, 18A-18E, 19A-19E, or 20A-20C.
10. The gRNA molecule of claim 1 or 4-7, wherein said targeting domain is selected from those in Tables 2A-2C, 9A-9D, 10A-10D, 11, 15A-15C, 16A-16E, or 17A-17C.
11. The gRNA molecule of any of claims 1-10, wherein said targeting domain is selected from Table 31.
12. The gRNA molecule of any of claims 1-11, wherein said gRNA is a modular gRNA molecule.
13. The gRNA molecule of any of claimsl-11, wherein said gRNA is a chimeric gRNA molecule.
14. The gRNA molecule of any of claims 1-13, wherein said targeting domain is 16 nucleotides or more in length.
15. The gRNA molecule of any of claims 1-14, wherein said targeting domain is 17 nucleotides or more in length.
16. The gRNA molecule of any of claims 1-15, wherein said targeting domain is 18 nucleotides or more in length.
17. The gRNA molecule of any of claims 1-16, wherein said targeting domain is 19 nucleotides or more in length.
18. The gRNA molecule of any of claims 1-17, wherein said targeting domain is 20 nucleotides or more in length.
19. The gRNA molecule of any of claims 1-18, wherein said targeting domain is 21 nucleotides or more in length.
20. The gRNA molecule of any of claims 1-19, wherein said targeting domain is 22 nucleotides or more in length.
21. The gRNA molecule of any of claims 1-20, wherein said targeting domain is 23 nucleotides or more in length.
22. The gRNA molecule of any of claims 1-21, wherein said targeting domain is 24 nucleotides or more in length.
23. The gRNA molecule of any of claims 1-22, wherein said targeting domain is 25 nucleotides or more in length.
24. The gRNA molecule of any of claims 1-23, wherein said targeting domain is 26 nucleotides or more in length.
25. The gRNA molecule of any of claims 1-24, comprising from 5' to 3': a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
26. The gRNA molecule of any of claims 1-25, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and
a targeting domain of 17 or 18 nucleotides in length.
27. The gRNA molecule of any of claims 1-26, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and
a targeting domain of 17 or 18 nucleotides in length.
28. The gRNA molecule of any of claims 1-27, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and
a targeting domain of 17 nucleotides in length.
29. The gRNA molecule of any of claims 1-28, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and
a targeting domain of 17 nucleotides in length.
30. A nucleic acid that comprises: (a) sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a BT target domain in BCLllA gene.
31. The nucleic acid of claim 30, wherein said gRNA molecule is a gRNA molecule of any of claims 1-29.
32. The nucleic acid of claim 30 or 31, wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the BT target knockout position.
33. The nucleic acid of any of claims 30-32, wherein said targeting domain is configured to target an early coding region or an enhancer region of the BCL11A gene.
34. The nucleic acid of claim 30 or 31, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
35. The nucleic acid of claim 30, 31, or 34, wherein said targeting domain is configured to target the promoter region of the BCL11A gene.
36. The nucleic acid of any of claims 30-35, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A- 16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
37. The nucleic acid of any of claims 30-36, wherein said targeting domain comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A- 16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
38. The nucleic acid of any of claims 30-37, wherein said gRNA is a modular gRNA
molecule.
39. The nucleic acid of any of claims 30-37, wherein said gRNA is a chimeric gRNA
molecule.
40. The nucleic acid of any of claims 30-39, wherein said targeting domain is 16 nucleotides or more in length.
41. The nucleic acid of any of claims 30-40, wherein said targeting domain is 17 nucleotides in length.
42. The nucleic acid of any of claims 30-40, wherein said targeting domain is 18 nucleotides in length.
43. The nucleic acid of any of claims 30-40, wherein said targeting domain is 19 nucleotides in length.
44. The nucleic acid of any of claims 30-40, wherein said targeting domain is 20 nucleotides in length.
45. The nucleic acid of any of claims 30-40, wherein said targeting domain is 21 nucleotides or more in length.
46. The nucleic acid of any of claims 30-40, wherein said targeting domain is 22 nucleotides in length.
47. The nucleic acid of any of claims 30-40, wherein said targeting domain is 23 nucleotides in length.
48. The nucleic acid of any of claims 30-40, wherein said targeting domain is 24 nucleotides in length.
49. The nucleic acid of any of claims 30-40, wherein said targeting domain is 25 nucleotides in length.
50. The nucleic acid of any of claims 30-40, wherein said targeting domain is 26 nucleotides in length.
51. The nucleic acid of any of claims 30-50, comprising from 5' to 3' :
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
52. The nucleic acid of any of claims 30-51, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
53. The nucleic acid of any of claims 30-52, comprising:
a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
54. The nucleic acid of any of claims 30-53, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain of 17 nucleotides in length.
55. The nucleic acid of any of claims 30-54, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain of 17 nucleotides in length.
56. The nucleic acid of any of claims 30-55, further comprising: (b) sequence that encodes a Cas9 molecule.
57. The nucleic acid of claim 56, wherein said Cas9 molecule is an eaCas9 molecule.
58. The nucleic acid of claim 57, wherein said eaCas9 molecule comprises a nickase
molecule.
59. The nucleic acid of claim 57, wherein said eaCas9 molecule forms a double strand break in a target nucleic acid.
60. The nucleic acid of any of claims 57 or58, wherein said eaCas9 molecule forms a single strand break in a target nucleic acid.
61. The nucleic acid of any of claims 57, 58 or 60, wherein said single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA molecule is complementary.
62. The nucleic acid of any of claims 57, 58 or 60, wherein said single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the targeting domain of said gRNA is complementary.
63. The nucleic acid of any of claims 57, 58 or 60, wherein said eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
64. The nucleic acid of any of claims 57, 58, 60, or 63, wherein said eaCas9 molecule is an HNH-like domain nickase.
65. The nucleic acid of any of claims 57,58, 60, 63, or 64, wherein said eaCas9 molecule comprises a mutation at D10.
66. The nucleic acid of any of claims 57,58 or 60, wherein said eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
67. The nucleic acid of any of claims 57,58, 60, or 66, wherein said eaCas9 molecule is an N- terminal RuvC-like domain nickase.
68. The nucleic acid of any of claims 57, 58, 60, 66, or 67, wherein said eaCas9 molecule comprises a mutation at H840 or N863.
69. The nucleic acid of claim 56, wherein said Cas9 molecule is an eiCas9 molecule.
70. The nucleic acid of claim 69, wherein said Cas9 molecule is an eiCas9 fusion protein molecule.
71. The nucleic acid of claim 69 or 70, wherein the eiCas9 fusion protein molecule is an eiCas9-transcription repressor domain fusion or eiCas9-chromatin modifying protein fusion.
72. The nucleic acid of any of claims 30-71, further comprising: (c) sequence that encodes a second gRNA molecule described herein having a targeting domain that is
complementary to a second target domain of the BCL11A gene.
73. The nucleic acid of claim 72, wherein said second gRNA molecule is a gRNA molecule of any of claims 1-29.
74. The nucleic acid of claim 72 or 73, wherein said targeting domain of said second gRNA molecule is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the BT target knockout position.
75. The nucleic acid of any of claims 72-74, wherein said targeting domain of said second gRNA is configured to target an early coding region or an enhancer region of the
BCL11A gene.
76. The nucleic acid of claim 72 or 73, wherein said targeting domain of said second gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a BT knockdown target position to reduce, decrease or repress expression of the BCL11A gene.
77. The nucleic acid of any of claims 72, 73, or 76, wherein said targeting domain of said second gRNA molecule is configured to target the promoter region of the BCL11A gene.
78. The nucleic acid of claim 72-77, wherein said targeting domain of said second gRNA molecule comprises or consists of a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
79. The nucleic acid of claim 72-78, wherein said targeting domain of said second gRNA molecule comprises or consists of a sequence that is the same as a targeting domain sequence from any of Tables 1A-1F, 2A-2C, 3A-3E, 4A-4E, 5A-5B, 6A-6D, 7A-7D, 8, 9A-9D, 10A-10D, 11, 12A-12D, 13A-13E, 14A-14B, 15A-15C, 16A-16E, 17A-17C, 18A-18E, 19A-19E, 20A-20C, or 31.
80. The nucleic acid of any of claims 72-79, wherein said second gRNA molecule is a
modular gRNA molecule.
81. The nucleic acid of any of claims 72-79, wherein said second gRNA molecule is a
chimeric gRNA molecule.
82. The nucleic acid of any of claims 72-81, wherein said targeting domain is 16 nucleotides or more in length.
83. The nucleic acid of any of claims 72-82, wherein said targeting domain is 17 nucleotides in length.
84. The nucleic acid of any of claims 72-82, wherein said targeting domain is 18 nucleotides in length.
85. The nucleic acid of any of claims 72-82, wherein said targeting domain is 19 nucleotides in length.
86. The nucleic acid of any of claims 72-82, wherein said targeting domain is 20 nucleotides in length.
87. The nucleic acid of any of claims 72-86, wherein said second gRNA molecule comprises from 5' to 3':
a targeting domain;
a first complementarity domain;
a linking domain; a second complementarity domain;
a proximal domain; and
a tail domain.
88. The nucleic acid of any of claims 72-87, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
89. The nucleic acid of any of claims 72-88, wherein said second molecule gRNA molecule comprises:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain of 17 or 18 nucleotides in length.
90. The nucleic acid of any of claims 72-89, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain of 17 nucleotides in length.
91. The nucleic acid of any of claims 72-90, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain of 17 nucleotides in length.
92. The nucleic acid of any of claims 72-91, further comprising a third gRNA molecule.
93. The nucleic acid of claim 92, further comprising a fourth gRNA molecule.
94. The nucleic acid of any of claims 30-71, wherein said nucleic acid does not comprise (c) a sequence that encodes a second gRNA molecule.
95. The nucleic acid of any of claims 56-94, wherein each of (a) and (b) is present on the same nucleic acid molecule.
96. The nucleic acid of claim 95, wherein said nucleic acid molecule is an AAV vector.
97. The nucleic acid of any of claims 56-94, wherein: (a) is present on a first nucleic acid molecule; and (b) is present on a second nucleic acid molecule.
98. The nucleic acid of claim 97, wherein said first and second nucleic acid molecules are AAV vectors.
99. The nucleic acid of any of claims 72-93 or 95-98, wherein each of (a) and (c) is present on the same nucleic acid molecule.
100. The nucleic acid of claim 99, wherein said nucleic acid molecule is an AAV
vector.
101. The nucleic acid of any of claims 72-93 or 95-98, wherein: (a) is present on a first nucleic acid molecule; and (c) is present on a second nucleic acid molecule.
102. The nucleic acid of claim 101, wherein said first and second nucleic acid
molecules are AAV vectors.
103. The nucleic acid of any of claims 71-93, 95, 96, 99, or 100, wherein each of (a), (b), and (c) are present on the same nucleic acid molecule.
104. The nucleic acid of claim 103, wherein said nucleic acid molecule is an AAV vector.
105. The nucleic acid of any of claims 72-93 or 95-102, wherein:
one of (a), (b), and (c) is encoded on a first nucleic acid molecule; and
a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule.
106. The nucleic acid of claim 105, wherein said first and second nucleic acid
molecules are AAV vectors.
107. The nucleic acid of claim 72-93, 97, 98, 101, 102, 105, or 106, wherein: (a) is present on a first nucleic acid molecule; and (b) and (c) are present on a second nucleic acid molecule.
108. The nucleic acid of claim 107, wherein said first and second nucleic acid
molecules are AAV vectors.
109. The nucleic acid of claim 72-93, 97-100, 105, or 106, wherein: (b) is present on a first nucleic acid molecule; and (a) and (c) are present on a second nucleic acid molecule.
110. The nucleic acid of claim 109, wherein said first and second nucleic acid
molecules are AAV vectors.
111. The nucleic acid of claim 72-93, 95, 96, 101, 102, 105, or 106, wherein: (c) is present on a first nucleic acid molecule; and (b) and (a) are present on a second nucleic acid molecule.
112. The nucleic acid of claim 111, wherein said first and second nucleic acid
molecules are AAV vectors.
113. The nucleic acid of any of claims 97, 101, 105, 107, 109, or 111, wherein said first nucleic acid molecule is other than an AAV vector and said second nucleic acid molecule is an AAV vector.
114. The nucleic acid of any of claims 30-113, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes said gRNA molecule of (a).
115. The nucleic acid of claims 72-93 or 95-114, wherein said nucleic acid comprises a second promoter operably linked to the sequence that encodes the second gRNA molecule of (c).
116. The nucleic acid of claim 115, wherein the promoter and second promoter differ from one another.
117. The nucleic acid of claim 115, wherein the promoter and second promoter are the same.
118. The nucleic acid of any of claims 72-117, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes the Cas9 molecule of (b).
119. A composition comprising the (a) gRNA molecule of any of claims 1-29.
120. The composition of claim 119, further comprising (b) a Cas9 molecule of any of claims 56-71.
121. The composition of any of claims 119 or 120, further comprising (c) a second gRNA molecule of any of claims 72-91.
122. The composition of claim 121, further comprising a third gRNA molecule.
123. The composition of claim 122, further comprising a fourth gRNA molecule.
124. A method of altering a cell comprising contacting said cell with:
(a) a gRNA of any of claims 1-29;
(b) a Cas9 molecule of any of claims 56-71; and
optionally, (c) a second gRNA molecule of any of claims 72-91.
125. The method of claim 124, further comprising a third gRNA molecule.
126. The method of claim 125, further comprising a fourth gRNA molecule.
127. The method of claim 115, comprising contacting said cell with (a), (b), and (c).
128. The method of any of claims 124-127, wherein said cell is from a subject
suffering from BT or BTM.
129. The method of any of claims 124-128, wherein said cell is from a subject who could benefit from a mutation at a BT target position of the BCL11A gene.
130. The method of any of claims 124-129, wherein said cell is an erythroid cell.
131. The method of any of claims 124-129, wherein said cell is an erythroid cell
precursor cell.
132. The method of claim 131, wherein said erythorid cell precursor cell is a
hematopoietic stem cell.
133. The method of claim 131 or 132, wherein said erythorid cell precursor cell is a CD34+ hematopoietic stem cell.
134. The method of any of claims 124-133, wherein said contacting step is performed ex vivo.
135. The method of claim 134, wherein said contacted cell is returned to said subject's body.
136. The method of any of claims 124-133, wherein said contacting step is performed in vivo.
137. The method of any of claims 124-136, comprising acquiring knowledge of the sequence of the BT target position in said cell.
138. The method of claim 137, comprising acquiring knowledge of the sequence of the BT target position in said cell by sequencing a portion of the BCL11A gene.
139. The method of any of claims 124-138, comprising inducing a BT target position mutation.
140. The method of any of claims 124-139, wherein the contacting step comprises contacting said cell with a nucleic acid that encodes at least one of (a), (b), and (c).
141. The method of any of claims 124-140, wherein contacting comprises contacting the cell with a nucleic acid of any of claims 30-118.
142. The method of any of claims 124-141, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b) and a nucleic acid which encodes and (a) and optionally (c).
143. The method of any of claims 124-141, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b), said gRNA molecule of (a) and optionally said second gRNA molecule of (c).
144. The method of any of claims 124-141, wherein the contacting step comprises delivering to said cell said gRNA molecule of (a), optionally said second gRNA molecule of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
145. A method of treating a subject, comprising contacting a subject, or a cell from said subject, with:
(a) a gRNA of any of claims 1-29;
(b) a Cas9 molecule of any of claims 56-71; and
optionally, (c) a second gRNA of any of claims 72-91.
146. The method of claim 145, further comprising contacting the subject or a cell from said subject with a third gRNA molecule.
147. The method of claim 146, further comprising contacting the subject or a cell from said subject with a fourth gRNA molecule.
148. The method of any of claims 145-147, further comprising contacting said subject or a cell from said subject with (a), (b), and (c).
149. The method of any of claims 145-148, wherein said subject is suffering from BT, e.g., BTM.
150. The method of any of claims 145-149, wherein said subject would benefit from a mutation at the BT target position of the BCL11A gene.
151. The method of any of claims 145-150, comprising acquiring knowledge of the sequence of the BT target position in said subject.
152. The method of claim 151, comprising acquiring knowledge of the sequence of the BT target position in said subject by sequencing a portion of the BCL11A gene.
153. The method of claim 145-152, comprising inducing a BT target position mutation in the BCL11A gene.
154. The method of any of claims 145-153, wherein a cell of said subject is contacted ex vivo with (a), (b), and optionally (c).
155. The method of claim 154, wherein said cell is returned to the subject's body.
156. The method of any of claims 145-153, comprising introducing a cell into said subject's body, wherein said cell subject is contacted ex vivo with (a), (b), and optionally (c).
157. The method of any of claims 145-153, wherein said contacting step is performed in vivo.
158. The method of any of claims 145-153 or 157, wherein said contacting step
comprises intravenous injection.
159. The method of any of claims 145-158, comprising contacting said subject or a cell from said subject with a nucleic acid that encodes at least one of (a), (b), and (c).
160. The method of any of claims 145-159, comprising contacting said subject or a cell from said subject with a nucleic acid of any of claims 30-118.
161. The method of any of claims 145-160, wherein the contacting step comprises delivering to said subject said Cas9 molecule of (b) and a nucleic acid which encodes and
(a) and optionally (c).
162. The method of any of claims 145-160, wherein the contacting step comprises delivering to said subject said Cas9 molecule of (b), and said gRNA of (a) and optionally said second gRNA of (c).
163. The method of any of claims 145-160, wherein the contacting step comprises delivering to said subject said gRNA of (a), optionally said second gRNA of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
164. A reaction mixture comprising a gRNA, a nucleic acid, or a composition
described herein, and a cell from a subject having BT, or a subject which would benefit from a mutation at a BT target position of the BCL11A gene.
165. A kit comprising, (a) gRNA molecule of any of claims 1-29, or nucleic acid that encodes said gRNA, and one or more of the following:
(b) a Cas9 molecule of any of claims 56-71;
(c) a second gRNA molecule of any of claims 72-91; and
(d) nucleic acid that encodes one or more of (b) and (c).
166. The kit of claim 165, comprising nucleic acid that encodes one or more of (a), (b) and (c).
167. The kit of claim 165 or 166, further comprising a third gRNA molecule targeting a BCL11A target position.
168. The kit of claim 167, further comprising a fourth gRNA molecule targeting a
BCL11A target position.
169. A gRNA molecule of any of claims 1-29 for use in treating BT or BTM in a subject.
170. The gRNA molecue of claim 169, wherein the gRNA molecule in used in
combination with (b) a Cas9 molecule of any of claims 56-71.
171. The gRNA molecule of claim 169 or 170, wherein the gRNA molecule is used in combination with (c) a second gRNA molecule of any of claims 72-91.
172. Use of a gRNA molecule of any of claims 1-29 in the manufacture of a
medicament for treating BT or BTM in a subject.
173. The use of claim 172, wherein the medicament further comprises (b) a Cas9 molecule of any of claims 56-71.
174. The use of claim 172 or 173, wherein the medicament further comprises (c) a second gRNA molecule of any of claims 72-91.
175. A composition of any of claims 119-123 for use in treating BT or BTM in a subject.
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