WO2002068639A1 - CELL PROLIFERATION FACTOR Fwap10576 - Google Patents

CELL PROLIFERATION FACTOR Fwap10576 Download PDF

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Publication number
WO2002068639A1
WO2002068639A1 PCT/CN2002/000124 CN0200124W WO02068639A1 WO 2002068639 A1 WO2002068639 A1 WO 2002068639A1 CN 0200124 W CN0200124 W CN 0200124W WO 02068639 A1 WO02068639 A1 WO 02068639A1
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WIPO (PCT)
Prior art keywords
polypeptide
polynucleotide
dna
minutes
fwapl0576
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PCT/CN2002/000124
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French (fr)
Chinese (zh)
Inventor
Rutai Hui
Yuqing Liu
Baohua Liu
Lihe Lu
Jingzhou Chen
Libo Hou
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Fu Wai Hospital Chinese Academy Of Medical Sciences
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Publication of WO2002068639A1 publication Critical patent/WO2002068639A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4702Regulators; Modulating activity
    • C07K14/4705Regulators; Modulating activity stimulating, promoting or activating activity
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/10Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention relates to newly identified polynucleotides and polypeptides encoded thereby, methods for producing such polynucleotides and polypeptides, and uses of these polynucleotides and polypeptides.
  • the polypeptide of the present invention has been identified as a cell proliferation factor, and is hereinafter sometimes referred to as "F wa p'10576".
  • the polynucleotides and polypeptides of the invention are of human origin. Background of the invention
  • Cardio-cerebrovascular disease is one of the major diseases that threaten human health. According to statistics, about 2.6 million Chinese die each year from the disease, and on average every 12 seconds a compatriot is killed by the disease. In China, the ratio of cardiovascular deaths to total deaths increased from 12.1% in 1957 to 35.8% in 1990, an increase of 2.9 times. According to the prediction of the World Bank: By 2020, the proportion of deaths from cardiovascular and cerebrovascular diseases in the world will increase from 28.9% in 1990 to 36.3%, of which 70% of cardiovascular and cerebrovascular diseases occur China.
  • Heart failure, antiarrhythmia, and interventional treatment have played a positive role in saving the lives and improving the quality of life of patients with cardiovascular and cerebrovascular diseases.
  • these methods only treat the symptoms and do not fundamentally touch the cause, the treatment is not targeted.
  • the patient's life was prolonged, the purpose of prevention and cure was not really achieved. Therefore, research at the level of molecular biology to find out the causative factors and pathogenesis of cardio-cerebrovascular disease is expected to make breakthrough progress in the treatment of the disease and achieve the goal of fundamentally curbing cardio-cerebrovascular disease.
  • cDNA library is one of the important research tools in the field of biological engineering.
  • MRNA is usually extracted from cells and a DNA copy of the mRNA (ie, cDNA, Complementary DNA) is synthesized by reverse transcriptase.
  • Single-stranded cDNA molecules are transformed into double-stranded DNA molecules by the action of DNA polymerase, and then inserted into a vector, transformed into host bacteria and grown into clones.
  • Each such clone contains only specific mRNA information, and such a set of clones is called a cDNA library.
  • the cDNA does not contain introns, the corresponding expressed genes can be directly selected from the cDNA library. Therefore, compared with the gene library, the cDNA library has the advantages of simple operation and convenient use. Differences in genes expressed in different human cells determine differences in tissue and organ phenotypes. Isolate and identify specific tables from human aortic cDNA libraries Gene, especially disease-related genes, is one of the effective methods for studying hereditary cardiovascular and cerebrovascular diseases
  • a novel mature polypeptide Fwapl0576 and fragments, analogs, and derivatives of Fwapl0576 that are biologically active and useful in diagnostic or therapeutic applications are provided.
  • the polypeptide of the invention is of human origin.
  • an isolated nucleic acid molecule encoding a polypeptide of the present invention, including mRNA, DNA, cDNA, genomic DNA, and the nucleic acid molecule having biological activity and useful in diagnostics or therapeutics. Fragments, analogs and derivatives.
  • a method for producing a Fwapl0576 polypeptide by recombinant technology comprises culturing a recombinant prokaryotic and / or eukaryotic host cell containing a nucleic acid sequence encoding a polypeptide of the present invention.
  • a method for treating a Fwapl0576 polypeptide or a polynucleotide encoding a Fwapl0576 polypeptide for example, treating cardiovascular and cerebrovascular proliferative diseases and inhibiting tumor formation.
  • antibodies to these polypeptides are provided.
  • antagonists of said polypeptides which can be used to inhibit the effects of these polypeptides.
  • a method for diagnosing a disease or disease susceptibility related to mutations in a nucleic acid sequence of the present invention and abnormal expression of a polypeptide of the present invention is provided.
  • a method for using a polypeptide of the present invention or a polynucleotide encoding such a polypeptide for scientific research in vitro, DNA synthesis, and artificially constructing a DNA vector there is provided a method for using a polypeptide of the present invention or a polynucleotide encoding such a polypeptide for scientific research in vitro, DNA synthesis, and artificially constructing a DNA vector.
  • MRNA was extracted and transcribed into cDNA to construct an adult active vein cDNA library.
  • Fwapl0576 gene fragment was obtained from the library, and the full-length cDNA sequence of Fwapl0576 was obtained by EST splicing. Further study the expression and distribution of Fwapl0576 gene in different tissues, and study the activity and function of Fwapl0576 peptide. Detailed description of the invention
  • the present invention provides an isolated nucleic acid (polynucleotide) sequence which encodes a mature polypeptide having a putative amino acid sequence as shown in SEQ ID NO: 2.
  • the polynucleotide of the present invention is found from a cDNA library of an adult aorta. It is located on chromosome 16 in human cells. It contains an open reading frame that encodes a polypeptide with 156 amino acid residues. Homology analysis showed that the Fwapl0576 polypeptide has no sequence homology with currently known proteins.
  • the putative Fwap 10576 polypeptide consists of 156 amino acids. Its sequence characteristics are: (A) 1 to 34 Aa is a signal peptide; (B) 2 to 7 Aa (GSTWGS), 19 to 24 Aa (GLVLSL), 46 to 51 Aa (GTAISC), 96 To 101 Aa (GVSPCC), 118 to 123 Aa (GGLQAL) are N-myristoylation sites: (C) 33 to 39 Aa (RARDRDY) is a tyrosine kinase phosphorylation site; (D) 56 to 58 Aa (SSR) is a protein kinase C phosphorylation site; (E) 77 to 80 Aa (NQSN) is an N-glycosylation site.
  • the polynucleotide of the present invention may be in the form of RNA or DNA, wherein DNA includes C DNA, genomic DNA, and synthetic DNA.
  • DNA can be double-stranded or single-stranded. If it is single-stranded, it can be a coding or non-coding (antisense) strand.
  • the coding sequence encoding the mature polypeptide may be the same as the coding sequence (nucleotides 213 to 683) shown in SIQ ID NO: 1 (1083 nucleotides in total length); or, due to the redundancy or degeneracy of the genetic code
  • the coding sequence may be different from the coding sequence shown in SIQ ID NO: 1.
  • the polynucleotide encoding the mature polypeptide shown by SIQ ID NO: 2 may include: the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and additional coding sequences, such as the polynucleotide encoding the leader or secretion sequence of the polypeptide; Coding sequences (and optionally additional coding sequences) and non-coding sequences, such as non-coding sequences at the 5 'and / or 3' end of the intron or mature polypeptide coding sequence.
  • polynucleotide encoding a polypeptide includes polynucleotides containing only polypeptide coding sequences and polynucleotides containing additional coding and / or non-coding sequences.
  • the present invention also relates to a variant of the above-mentioned polynucleotide, which encodes a putative polypeptide fragment, analog, and derivative having the amino acid sequence shown in SIQ ID NO: 2.
  • the variant may be a naturally occurring allelic variant of the polynucleotide, or a non-naturally occurring variant.
  • an allelic variant is another form of a polynucleotide that can carry substitutions, deletions, or additions of one or more nucleotides without substantially altering the encoding of the polypeptide.
  • the present invention includes a polynucleotide capable of encoding the same amino acid sequence as the mature polypeptide shown by SIQ ID NO: 2, and also includes a polynucleoside capable of encoding fragments, derivatives, and analogs of the mature polypeptide shown by SIQ ID NO: 2.
  • Acid variant include deletions, substitutions, additions or insertions.
  • the present invention also includes a polynucleotide in which the coding sequence of a mature polypeptide can be in the same reading frame as a polynucleotide that facilitates expression and secretion of the polypeptide from a host cell (such as a polynucleotide that produces a leader sequence) Integration.
  • the leader sequence acts as a secretory sequence to control the transport of the polypeptide from the cell.
  • a polypeptide having a leader sequence is a preprotein, and a mature cell can be produced by cleavage of the leader sequence by a host cell.
  • the polynucleotide of the present invention may also encode a proprotein, which is a mature protein with a prosequence, a mature protein with an amino acid residue added at the 5 'end, and is an inactive form. After excision of the original sequence, an active mature protein can be produced.
  • the polynucleotide of the present invention can encode a mature protein, can also encode a protein with an original sequence, and can also encode a protein having both a prosequence and a leader sequence.
  • the polynucleotide of the present invention also includes a coding sequence fused to a marker sequence in the same reading frame, and the marker sequence can be used for purifying the polypeptide of the present invention.
  • the marker sequence can be a pQE-9 vector Hexahistidine provided for purification of fusion products.
  • the marker sequence may be hemagglutinin (HA), and the HA tag corresponds to an epitope derived from influenza hemagglutinin (Wilson, I., etc. Cell, 37: 767 (1984)).
  • gene refers to a DNA fragment related to the production of a polypeptide, which includes regions before and after the coding region, and intervening sequences (introns) between individual coding segments (exons).
  • the fragment of the full-length gene of the present invention can be used as a hybridization probe for a cDNA library to isolate the full-length gene and other genes with high homology or similar biological activity to the gene.
  • the probe preferably has at least 30 bases, and may contain 50 or more bases.
  • the probes can also be used to identify cDNA clones corresponding to full-length transcripts and one or more genomic clones containing complete genes. Among them, the complete gene includes regulatory sequences, promoter sequences, exons and introns.
  • oligonucleotide probes can be synthesized based on known DNA sequences, and the coding portion of the gene can be isolated.
  • a labeled oligonucleotide probe that is complementary to the gene sequence of the present invention can be used to screen a library member for hybridization from a human cDNA, genomic DNA, or mRNA library.
  • the invention also relates to a nucleic acid sequence that hybridizes to a polynucleotide of the invention. Provided that the two sequences have at least 85% homology, preferably at least 90%, and more preferably at least 95%.
  • the invention particularly relates to polynucleotides that hybridize to the polynucleotides of the invention under stringent conditions. As used herein, the term "stringent conditions" means that hybridization occurs only when there is at least 95%, preferably at least 97% homology between sequences.
  • a polynucleotide that hybridizes to the above sequence can encode a polypeptide having the same biological function or activity as the mature polypeptide of the present invention.
  • a polynucleotide having homology to the polynucleotide of the present invention and capable of hybridizing may have at least 20 bases, preferably at least 30 bases, more preferably at least 50 bases, which may or may not retain activity .
  • Such a polynucleotide can be used as a probe of SEQ ID NO: 1 for recovering the polynucleotide, as a diagnostic probe, or as a PCR primer.
  • the present invention relates to a polynucleotide having at least 85%, preferably at least 90%, and more preferably at least 95% homology with a polynucleotide encoding the polypeptide represented by SEQ ID NO: 2 (the fragment has at least 30 bases, preferably at least 50 bases), and polypeptides encoded by these polynucleotides.
  • the present invention relates to a putative polypeptide having an amino acid sequence shown in SIQ ID NO: 2 and fragments, analogs and derivatives thereof.
  • fragment when referring to a polypeptide encoded by SIQ ID NO: 1 or a polypeptide having an amino acid sequence as shown in SIQ ID NO: 2 mean that the said substance is substantially retained A polypeptide that has a biological function or activity.
  • the analog may include proteinogen, which can produce an active mature polypeptide after partial excision.
  • the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide or a synthetic polypeptide, preferably a recombinant polypeptide.
  • the polypeptide (SIQ ID NO: 2) and fragments, derivatives or analogs thereof may be: (i) a polypeptide in which one or more amino acid residues are conservative or non-conservative amino acid residues (preferably conservative) Amino acid residues), and the substituted amino acid residue may or may not be encoded by a genetic codon, or (ii) a polypeptide in which one or more amino acid residues contain a substituent, or (ii i) A polypeptide in which a mature polypeptide is related to another Fusion of a compound, such as a compound that increases the half-life of a polypeptide (such as polyethylene glycol), or (iv) a polypeptide in which a mature polypeptide is fused to an additional amino acid residue, such as to a leader or secretory sequence, and as Sequence fusions for purification of mature polypeptides.
  • a polypeptide in which one or more amino acid residues are conservative or non-conservative amino acid residues (preferably conservative) Am
  • polypeptides and polynucleotides of the invention are preferably provided in isolated form, and are preferably purified into homogeneous (homogeneous) materials.
  • isolated means that the substance is removed from the original environment (for example, the natural environment if the substance is naturally occurring).
  • a polynucleotide or polypeptide naturally occurring in a living animal is not isolated, but the same polynucleotide or polypeptide is isolated from some or all of the coexisting substances in the natural system.
  • Such a polynucleotide may be part of a vector, and such a polynucleotide or polypeptide may be part of a composition as long as the vector or composition is not part of its natural environment.
  • the polypeptide of the present invention includes a polypeptide (especially a mature polypeptide) represented by SEQ ID NO: 2 and a homology of at least 85%, more preferably 90%, and most preferably 95% with the polypeptide of SEQ ID NO: 2 % Of homologous polypeptide.
  • the invention also includes fragments of the above-mentioned polypeptides, which generally comprise at least 30, preferably at least 50 amino acids.
  • polypeptide fragments (or partial polypeptides) of the present invention can be used to produce full-length polypeptides. This fragment can be used as an intermediate to produce a full-length polypeptide.
  • polynucleotide fragments of the present invention can be used to synthesize full-length polynucleotides of the present invention.
  • the present invention relates to a vector containing a polynucleotide of the present invention, a host cell engineered with the vector gene of the present invention, and a method for producing a polypeptide of the present invention by recombinant technology.
  • Host cells are produced using the vectors of the present invention by genetic engineering (transduction, transformation or transfection).
  • the vector may be a cloning or expression vector.
  • Vectors can be in the form of plasmids, virus particles, and phages.
  • Engineering host cells can be cultured in conventional nutrient media modified to activate promoters, screen transformants, or amplify the Fwapl0576 gene of the invention. Culture conditions (such as temperature and pH) are determined by different host cells, and these will be apparent to those skilled in the art.
  • the polynucleotides of the invention can be used to produce polypeptides.
  • the polynucleotide may be contained in any vector suitable for expressing a polypeptide.
  • vectors include chromosomal-derived, non-chromosomal-derived and synthetic DNA sequences. Examples include SV40 derivatives, bacterial plasmids, phage DNA, baculovirus, yeast plasmids, vectors obtained by combining plasmid and phage DNA, and viral DNA (such as vaccinia, adenovirus, poultry pox virus, and pseudorabies virus).
  • viral DNA such as vaccinia, adenovirus, poultry pox virus, and pseudorabies virus.
  • other vectors can be used as long as they can replicate and survive in the host.
  • DNA sequences are inserted into appropriate restriction endonuclease sites using methods known in the art.
  • the DNA sequence in the expression vector can be linked to an appropriate expression control sequence (promoter) to guide mRNA synthesis.
  • promoters are: LTR or SV 40 promoter, lac or trp of E. coli, phage ⁇ P L Promoters, as well as other promoters known to control gene expression in prokaryotic or eukaryotic cells or their viruses.
  • the expression vector also contains a ribosome binding site and a transcription terminator that directs the initiation of translation.
  • the vector may also contain suitable sequences for amplified expression.
  • preferred expression vectors contain one or more selectable marker genes to provide phenotypic characteristics for selection of transformed host cells. For example dihydrofolate reductase or neomycin resistance for eukaryotic cell cultures, or for example tetracycline and ampicillin resistance for E. coli.
  • a vector containing the above-mentioned suitable DNA sequence and a suitable promoter or control sequence can be used to transform an appropriate host so that it can express a protein.
  • Suitable hosts are: bacterial cells such as E. coli, Streptomyces, Salmonella typhimurium; fungal cells such as yeast; insect cells such as DrosorpHila and Spodoptera Sf9; animal cells such as CH0, COS or Bowes melanoma; glands Viruses; plant cells, etc. With the teachings herein, selecting the appropriate host can be considered to be within the knowledge of those skilled in the art.
  • the invention also includes recombinant constructs containing one or more sequences as broadly described above.
  • the construct includes a vector, such as a plasmid or a viral vector, into which the nucleic acid sequence of the present invention has been inserted in the forward or reverse direction.
  • the construct further comprises a regulatory sequence, such as a promoter, operably linked to the sequence.
  • a promoter such as a promoter
  • bacterial vectors pQE70, pQE60, pQE-9 (Qiagen), pBS, pD10, pHagescript, psiX174, pbluescript SK, pbsks, pNH8A, pNH16a, pNH18A, pNH46A (Stratagene), ptrc99a, pKK223-3, pKK233-3, P DR540 ⁇ pRITS (pHarmaca); eukaryotic vectors: pWLNEO, pSV2CAT pOG44, pXT pSG (Stratagene), pSV, pBPV, pMSG, pSVL (Parmacia) friendshipIn addition, other plasmids or vectors can be used as long as they can be hosted in the host Copy and survive.
  • Promoter regions can be selected from genes using vectors bearing CAT (chloramphenicol transferase) or other selectable markers.
  • Two suitable vectors are PKK232-8 and PCM7.
  • Particularly mentioned bacterial promoters include lacl, lacZ, T3, T7, gpt, ⁇ P ⁇ , P and trp.
  • Eukaryotic promoters include CMV immediate early, SV thymidine kinase, early and late SV40, LTRs from retroviruses, and mouse metallothionein-1. Selection of appropriate vectors and promoters can be considered as within the knowledge of those skilled in the art.
  • the invention in another embodiment, relates to a host cell comprising a construct as described above.
  • Host cells can be higher eukaryotic cells (such as mammalian cells), lower eukaryotic cells (such as yeast cells), or prokaryotic cells (such as bacterial cells).
  • the introduction of constructs into host cells can be achieved by calcium phosphate transfection, DEAE-dextran-mediated transfection, or electroporation (Davis, L., Dibner, M., Battey, I., Molecular Biology Basic Methods, (1986)).
  • the construct in the host cell can produce the product encoded by the recombinant sequence via conventional means.
  • the polypeptide of the present invention can be synthesized using a conventional peptide synthesizer.
  • the mature protein can be expressed in mammalian cells, yeast cells, bacterial cells, or other cells.
  • the RNA derived from the DNA construct of the present invention can also be produced by a cell-free translation system. Health target protein. Sambrook et al., Molecular Cloning Laboratory Handbook (1989, Second Edition, Cold Spring Harbor Laboratory, New York) describe suitable cloning and expression vectors that can be used in prokaryotic and eukaryotic hosts.
  • Enhancers are cis-acting elements of DNA, typically about 10 to 300 bp. They act on promoters to enhance their transcription. Examples of enhancers are: SV40 enhancer 100 to 270 bp upstream of the origin of replication, polymorphoma enhancer, and adenovirus enhancer.
  • a recombinant expression vector includes an origin of replication and a selection marker gene (such as the ampicillin resistance gene of E. coli and the TRP1 gene of Saccharomyces cerevisiae), and a promoter obtained from a highly expressed gene capable of directing transcription of downstream structural genes .
  • a selection marker gene such as the ampicillin resistance gene of E. coli and the TRP1 gene of Saccharomyces cerevisiae
  • promoters can be obtained from operons encoding glycolytic enzymes (such as 3-phosphoglycerate kinase (PGK)), ⁇ -factors, acid phosphatases, or heat shock proteins.
  • Heterologous sequences are assembled with translation initiation and termination sequences in an appropriate manner. Preferably, it is assembled with a leader sequence capable of directing the secretion of the protein to the periplasm or extracellular medium.
  • the heterologous sequence can encode a fusion protein containing an N-terminal recognition peptide, which has ideal characteristics, such
  • an expression vector suitable for bacteria By inserting the structural gene encoding the protein of interest, appropriate translation initiation and termination signals, and a functional promoter together, an expression vector suitable for bacteria can be constructed.
  • the vector contains one or more selectable markers and an origin of replication to maintain the vector and, if necessary, amplify the vector in the host.
  • Suitable prokaryotic hosts for transformation include multiple species of E. coli, Bacillus subtilis, Salmonella typhimurium, Pseudomonas, Streptomyces and Staphylococcus.
  • expression vectors for bacteria may contain selectable markers and origins of replication derived from commercially available vectors containing genetic elements of the well-known cloning vector pBR322 (ATCC37017).
  • Such commercially available carriers include pKK223-3 (pHarmacia Fine Chemicals, Uppsala, Sweden) and GE 1 (Promega Biotec, Madison, WI, USA). These "backbone" portions of pB 322 are combined with appropriate promoters and structural sequences to be expressed.
  • a suitable host strain After transforming a suitable host strain, after it has grown to a suitable cell density, induce the selected promoter by a suitable method (such as temperature conversion or chemical induction), and continue to culture the cells for a period of time.
  • Cells are usually harvested by centrifugation, and the cells are disrupted by physical or chemical methods. The crude product obtained is retained for further purification.
  • the microbial cells can be disrupted by any conventional method, including freeze-thaw methods, sonication, mechanical disruption, or the use of cell lysing agents, which methods are well known to those skilled in the art.
  • mammalian cell culture systems can also be used to express recombinant proteins.
  • mammalian expression systems are the monkey kidney fibroblast COS-7 cell line described by Gluzman (Cell, 23: 175 (1981)) and other cell lines capable of expressing compatible vectors, for example, C127, 3T3, CH0, HeLa and BHK cell lines.
  • Mammalian expression vectors contain origins of replication, suitable promoters and enhancers, and any necessary ribosome binding sites, polyadenylation sites, splice donor and acceptor sites, transcription termination sequences, and 5 'flanking non- Transcribed sequence.
  • DNA sequences derived from the SV40 virus genome can be used to provide the required non-transcribed genetic elements.
  • the polypeptides of the present invention can be recovered and purified from recombinant cell cultures by a variety of methods including ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphate cellulose chromatography, hydrophobic interaction chromatography, Affinity chromatography, hydroxyapatite chromatography, lectin chromatography, and high performance liquid chromatography (HPLC).
  • polypeptides of the present invention may be naturally purified, or chemically synthesized, or prepared by recombinant techniques from prokaryotic or eukaryotic hosts (such as bacteria, yeast, higher plants, cultured insects, and mammalian cells). Depending on the host used in the recombinant method, the polypeptide of the invention may be glycosylated or non-glycosylated. The polypeptide of the invention may also contain a starting methionine residue.
  • polynucleotides and polypeptides of the present invention can be used as research reagents and materials for the treatment and diagnosis of human diseases.
  • Fwapl0576 has the effect of promoting cell proliferation and may be used in the treatment of cardiovascular and cerebrovascular diseases.
  • a method for identifying an activator or antagonist of a polypeptide of the invention is to culture mammalian cells or membrane preparations that express the Fwapl0576 receptor with Fwapl0576 polypeptide in the presence of a certain compound, and detect that the compound enhances or blocks the interaction of Fwapl0576 polypeptide with the receptor to generate a second messenger Ability.
  • Second messenger systems include, but are not limited to: protein tyrosine kinase system (PTK), cAMP guanylate cyclase, ion channels, or phosphoinositide hydrolysis.
  • Another method for identifying polypeptide antagonists is competition inhibition.
  • This method sets the number of Fwapl0576 polypeptide molecules bound to the receptor as a control in the absence of a compound, and determines potential antagonists by detecting changes in the number of Fwapl0576 polypeptide molecules bound to the receptor in the presence of the compound.
  • Potential antagonists include antibodies, or in some cases oligopeptides that bind to a polypeptide of the invention, which bind to the polypeptide and effectively eliminate its function. .
  • Another potential antagonist compound is an antisense construct made using antisense technology.
  • Antisense DNA or RNA is formed by triple helix to control gene expression.
  • the above methods are all based on the combination of polynucleotide and DNA or RNA.
  • an antisense RNA of about 10 to 40 base pairs in length can be designed based on the 5 'end of a nucleic acid sequence encoding a mature polypeptide of the present invention.
  • Another example is to design a DNA that is complementary to the gene region involved in transcription (triple helix-see Lee et al., Nucleic Acid Research, 6: 3073 (1979); Cooney et al., Science, 241: 456, (1988); and Dervan et al., Science 251: 1360 (1991)), thereby preventing transcription and the production of the polypeptide of the present invention.
  • Antisense RNA hybridizes with mRNA in vivo and blocks translation of the mRNA molecule into the polypeptide of the present invention (Antisense_0kano, J.
  • oligonucleotides as antisense inhibitors of gene expression Glycolic acid (CRC Press, Boca Raton, FL (1988)) o
  • the aforementioned oligonucleotides can be delivered to cells to express antisense and DNA in vivo to inhibit the production of the polypeptide of the invention.
  • Antagonists also include small molecules that, by binding to the polypeptide of the invention, prevent the polypeptide from interacting with its receptor, thereby blocking its normal biological activity.
  • Small molecules include, but are not limited to, small peptides or peptoid molecules.
  • the polypeptides of the present invention can be combined with a suitable carrier to form a pharmaceutical composition.
  • a suitable carrier comprises a therapeutically effective amount of a polypeptide and a pharmaceutically acceptable carrier or excipient.
  • Carriers include, but are not limited to, saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof.
  • the formulation should be appropriate to the mode of administration.
  • the present invention also provides a pharmaceutical package or kit containing one or more containers therein, the container containing one or more components of the pharmaceutical composition of the present invention. At the same time, it can provide information about the manufacture, use, and sale of drugs or biological products that has been reviewed by government drug regulatory agencies.
  • the pharmaceutical composition of the present invention can also be used in combination with other therapeutic compounds.
  • the pharmaceutical composition can be administered in a conventional manner, such as by oral, topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route.
  • the pharmaceutical composition is administered in a dose effective to treat and / or prevent a particular disease. It is usually administered in an amount of at least about 10 micrograms per kilogram of body weight. In most cases, it is administered in an amount not exceeding about 8 mg / kg body weight per day. In most cases, taking into account the route of administration and symptoms, the dosage is from about 10 ⁇ g / kg to 1 mg / kg body weight per day.
  • polypeptide of the present invention and its activators and antagonists can be used by expression in vivo, which is often referred to as "gene therapy”.
  • a patient's cells can be genetically engineered with a nucleic acid (DNA or RNA) encoding a polypeptide of the present invention in vitro, and the engineered cells can be provided to a patient in need of treatment.
  • a nucleic acid DNA or RNA
  • the engineered cells can be provided to a patient in need of treatment.
  • the methods described above are well known in the art.
  • cells can be genetically engineered with a retrovirus containing RNA encoding a polypeptide of the invention.
  • cells can be genetically engineered in vivo by methods known in the art to express a polypeptide in vivo.
  • a packaging cell is transduced with a retrovirus containing RNA encoding a polypeptide of the present invention so that it can produce an infectious virus particle containing the gene of interest.
  • This production cell is used in a patient to engineer the cell in vivo and express the polypeptide.
  • the polypeptides of the present invention are administered by the methods described above or otherwise in accordance with the teachings of the present invention.
  • Retroviruses from which retroviral plasmid vectors can be obtained include, but are not limited to: Moloney murine leukemia virus, spleen necrosis virus, retroviruses such as Rous sarcoma virus, Harvey sarcoma virus, avian leukemia Viruses, gibbon leukemia virus, human immunodeficiency virus, adenovirus, myeloproliferative sarcoma virus, and breast tumor virus.
  • the vector contains one or more promoters.
  • Suitable promoters that can be used include, but are not limited to: retrovirus LTR; SV 40 promoter; human cytomegalovirus (CMV) promoter (Miller et al., Biotechnology, Vol. 7, No. 9, 980- 990 (1989)); or other promoters (such as eukaryotic cell promoters, including but not limited to the histone, pol III, and ⁇ -actin promoters).
  • CMV cytomegalovirus
  • Other viral promoters that can be used include, but are not limited to, an adenovirus promoter, a thymidine kinase (TK) promoter, and a B19 parvovirus promoter. With the teachings herein, selecting a suitable promoter on the vector will be apparent to those skilled in the art.
  • the nucleic acid sequence encoding a polypeptide of the invention should be controlled by a suitable promoter.
  • suitable promoters that can be used include, but are not limited to: an adenovirus promoter (such as an adenovirus major late promoter); or a heterologous promoter (such as a cytomegalovirus (CMV) promoter); a respiratory syncytial virus (RSV) Promoter; Inducible promoter (such as MMT promoter, metallothionein promoter); heat shock promoter; albumin promoter; ⁇ promoter; human globin promoter; viral thymidine kinase promoter (such as pure Herpes thymidine kinase promoter); retrovirus LTRs (including modified retrovirus LTRs described above); ⁇ -actin promoter and human growth hormone promoter.
  • Promoter It may be a natural promoter of a gene encoding the polypeptide.
  • Packaging cells can be transduced with a retroviral plasmid vector to produce producing cells.
  • Packaging cells that can be transfected include, but are not limited to: PE50 PAC317, ⁇ _2, ⁇ - ⁇ , ⁇ 12, T19-14X, VT-19-19-17- ⁇ 2, CRE, v
  • the vector can be used to transduce packaging cells by any method known in the art. These methods include, but are not limited to, electroporation, the use of liposomes, and precipitation with CaP (.
  • retroviral plasmid vectors can be embedded in liposomes, or coupled to lipids, and then introduced into a host.
  • the production cell line produces an infectious retroviral vector particle comprising a nucleic acid sequence capable of encoding the polypeptide.
  • retroviral vectors can be used to transduce eukaryotic cells in vivo or in vitro.
  • the transduced eukaryotic cell will express a nucleic acid sequence encoding the polypeptide.
  • Eukaryotic cells that can be transduced include, but are not limited to, embryonic stem cells, embryonic cancer cells, and hematopoietic stem cells, liver cells, fibroblasts, myoblasts, keratinocytes, endothelial cells, and bronchial epithelial cells.
  • the present invention relates to the use of the Fwapl0576 gene in diagnosis or detection.
  • detecting mutations in the Fwapl0576 nucleic acid sequence By detecting mutations in the Fwapl0576 nucleic acid sequence, a related disease or susceptibility to the disease can be diagnosed.
  • RNA or cDNA can also be used for the same purpose.
  • PCR primers complementary to the polynucleotides of the present invention can be used to identify and analyze mutations. Detect deletions and insertions based on changes in the size of the amplified product, as compared to normal genotypes. Point mutations can be identified by hybridizing to amplified nucleic acid sequences with radioactively labeled RNA or antisense DNA. Digestion with RNaseA or by differences in melting temperature can discriminate between perfectly matched sequences and mismatched double strands.
  • DNA sequencing can directly reveal the sequence difference between the control gene and the gene carrying the mutation.
  • cloned DNA fragments can be used as probes to detect specific DNA segments.
  • the sensitivity of this method is greatly improved, for example, using sequencing primers and double-stranded PCR products, or single-stranded template molecules produced by a modified PCR method.
  • Conventional automated sequencing methods use radioactive or fluorescent labels to determine nucleic acid sequences.
  • DNA sequence differences can be achieved by detecting changes in the electrophoretic mobility of DNA fragments in gels with or without denaturants. Small sequence deletions and insertions can be displayed by high-resolution gel electrophoresis. DNA fragments of different sequences can be distinguished on denaturing formamide gradient gels. Depending on their specific melting point or partial melting temperature, different DNA fragments will stagnate at different positions on the gel (see Myers et al., Science, 230: 1242 (1985)) o
  • RNase and S1 protected nuclease protection assays or chemical cleavage methods can also detect sequence changes at specific locations (eg Cotton et al., PNAS, USA, 85: 4397-4401 (1985)).
  • hybridization hybridization, ribonuclease protection, chemical cleavage, direct DNA sequencing, or Southern blotting using restriction enzymes (such as restriction fragment length polymorphism (RFLP)) and genomic DNA can be used to detect DNA sequences. Difference.
  • restriction enzymes such as restriction fragment length polymorphism (RFLP)
  • mutations can also be detected by in situ analysis.
  • the present invention relates to a diagnostic analysis method by detecting changes in the content of Fwapl0576 peptide in different tissues. This is based on the fact that over-expression of the polypeptide in a tissue compared to normal control tissue can detect the presence of disease or disease susceptibility.
  • Analytical methods for detecting the content of the polypeptide of the present invention in a sample taken from a host are well known to those skilled in the art. Methods include radioimmunoassay, competitive binding assay, Western blot analysis, enzyme-linked immunosorbent assay (ELISA) assay and "sandwich” assay. , ELISA detection is preferred.
  • the ELISA assay involves first preparing a specific antibody, preferably a monoclonal antibody, of a polypeptide of the invention. A reporter antibody to the monoclonal antibody is then prepared. The reporter antibody is combined with a detectable reagent such as a radioactive, fluorescent or horseradish peroxidase. A sample is taken from the host and incubated in a solid support (such as a polystyrene dish) that binds to the protein in the sample. By incubating with non-specific proteins (such as bovine serum albumin), any free protein binding site in the dish will be covered.
  • a detectable reagent such as a radioactive, fluorescent or horseradish peroxidase.
  • the monoclonal antibody is incubated in the dish during the binding of the monoclonal antibody to any of the polypeptides of the invention bound to a polystyrene dish. Wash all unbound monoclonal antibodies with buffer. At this time, the receptor antibody linked to horseradish peroxidase is placed in a dish, and as a result, the receptor antibody is bound to any monoclonal antibody bound to the polypeptide of the present invention. Unbound monoclonal antibodies were then washed away. Then add the peroxidase substrate to the dish, and compared with the standard curve, the amount of color produced in a given time is the amount of protein present in a given volume of patient sample.
  • Polypeptide content can also be measured using competitive assays.
  • the method includes binding a specific antibody of the Fwapl0576 polypeptide to a solid phase support, and then labeling (such as radioactive labeling) the polypeptide of the present invention, passing a sample taken from the host through the solid phase support, and then detecting the amount of the label to determine sample competition. The amount of sexually bound antibody, thereby determining the content of the polypeptide of the present invention in the sample.
  • the polynucleotide sequence of the present invention is also extremely valuable for the identification of chromosomes. This sequence specifically targets and hybridizes to specific positions of the human chromosome. Currently, only a few chromosome identification reagents based on actual sequence data (repeating polymorphisms) can be used to mark stained body positions. Mapping chromosomes based on the DNA of the present invention is the first step in correlating these sequences with disease-related genes.
  • chromosomal localization of the sequence can be performed by preparing PCR primers (preferably 15-25 bp) from cDNA. Computer analysis of the 3 'untranslated region of the gene allows rapid selection of primers. Primers should not span the first exon of genomic DNA, or they will complicate amplification. Primers were then used in PCR to screen for somatic hybrids containing a single human chromosome. Only the hybrids containing the gene corresponding to the primer will produce amplified fragments.
  • PCR mapping of somatic hybrids is a quick way to locate specific DNA on specific chromosomes.
  • sublocalization can be accomplished in a similar manner using the same oligonucleotide primers and a set of fragments from a specific chromosome or large genome clone.
  • Other mapping methods that can be used for chromosome mapping include in situ hybridization, pre-screening with labeled, flow-sorted chromosomes, and pre-screening with hybridization to construct a chromosome-specific cDNA library.
  • Fluorescent in situ hybridization FISH
  • FISH Fluorescent in situ hybridization
  • the physical location of the gene on the chromosome can be linked to genetic map data. These data can be found in, for example, V. Mcusick, Human Mendelian Genetics (available on the Internet at the Welch Medical Library at Johns Hopkins University). Linkage analysis (co-heritance of physically adjacent genes) is then used to determine the relationship between genes and diseases that have been mapped to the same region of the chromosome.
  • Differences in the cDNA or genomic sequence between the affected individual and the normal individual then need to be determined. If mutations are observed in some or all of the affected individuals but not in normal individuals, the mutations may be the cause of the disease.
  • Said polypeptide, a fragment thereof, a derivative thereof or the like, or a cell expressing the above substance can be used as an immunogen to produce an antibody.
  • the antibody can be a polyclonal or monoclonal antibody.
  • the invention also includes chimeric, single-chain and humanized antibodies, as well as products of Fab fragments or Fab expression libraries. Various methods known in the art can be used to produce these antibodies and fragments.
  • Corresponding antibodies can be obtained by directly injecting or administering the polypeptide of the present invention to an animal body, preferably a non-human body.
  • the antibody thus obtained will bind to the polypeptide. In this way, even sequences that encode polypeptide fragments can produce antibodies capable of binding the entire natural polypeptide. This antibody is then used to isolate the polypeptide from the tissue in which the polypeptide is expressed.
  • any technique for producing antibodies by continuous cell line culture can be used. Examples include hybridoma technology (Kohler and Milstein, 1975, Nature, 256: 495-497), trisomy hybridoma technology, human B-cell hybridoma technology (Kozbor et al., 1983, Immunology Today, 4: 72) and £ 8 ⁇ -Hybridoma Technology (Cole, et al., 1985, Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96).
  • the technology for producing single-chain antibodies can be improved to produce single-chain antibodies against the polypeptide (immunogenic) of the present invention.
  • Transgenic mice can also be used to express humanized antibodies against the polypeptides (immunogenic) of the invention.
  • Figure 1 shows the distribution of Fwapl0576 in normal tissues.
  • Figure 2 shows the distribution of Fwapl0576 in different tumor cell lines.
  • Figure 3 shows the expression of Fwapl0576 in normal adult and fetal myocardial tissues, and in ventricular aneurysm tissue in patients with old myocardial infarction.
  • Figure 4 shows the expression of Fwapl0576 in brain tissue of normal animal models by in situ hybridization.
  • Figure 5 shows the optimization of the expression conditions of the recombinant protein TRXSX576. among them,
  • A shows the effect of different activation time on the expression of recombinant protein TRXSX576; B shows the effect of different induction time on the expression of recombinant protein TRXSX576.
  • Figure 6 shows the expression of Fwapl0576 in normal animal brain tissue by in situ hybridization.
  • Figure 7 shows the expression of Fwapl0576 in brain tissue of stroke animals by in situ hybridization.
  • Figure 8 shows the results of immunohistochemical analysis (light microscope x 100).
  • Figure 9 shows the cell proliferation induced by high expression of Fwapl0576.
  • RNA gents® Total RNA Isolation System kit was purchased from Promega Corporation (Cat NO. Z5110). The operation is as follows: Weigh adult aortic tissue stored in 0.3g of liquid nitrogen, add 10ml of denaturing solution (4M guanidine isothiocyanate, 25mM trisodium citrate) and 1ml 2M sodium acetate (pH4.0) and uniformly paddle. Add equal volume of water-saturated phenol and 0.2 times volume of chloroform, shake vigorously for 15 seconds, and leave on ice for 15 minutes. Centrifuge at 10,000 rpm, 4 ° C for 20 minutes.
  • denaturing solution 4M guanidine isothiocyanate, 25mM trisodium citrate
  • pH4.0 2M sodium acetate
  • RNA and other RNAs can be separated by affinity chromatography.
  • the oligo (dT) cellulose used in this experiment contains 12-18 nucleotides (T) of polymer chains.
  • T nucleotides
  • the mRNA with oligo (A) tail binds to oHgo (dT) and remains on the column, while the rRNA and tRNA without oligo (A) tail are washed off, and then suspended with low salt solution. MRNA on the column.
  • oligo (dT) cellulose suspension was added to 1.5ml RNase-free centrifuge tube 1 # ; take another 1.5ml centrifuge tube 2 # and add 1ml of total RNA diluted with loading buffer; tube 2 # and tube 2 # centrifugation for 1 min at room temperature, 12000 rpm; the supernatant removed by aspiration tube # 1, # 2 of the tube 1 # tube was added the supernatant, rocked 5-10 min; microfuge for 10 seconds at room temperature, 12000 rpm; lml with high salt buffer (10mM Tris-HCl pH7.5, ImM EDTA, 0.5M NaCl), washed 5 times, and centrifuged; Wash with 1ml low salt buffer (10mM Tris-HCl pH7.5, ImM EDTA, 0.1M NaCl), 5 times, centrifuged; 0.3ml The oligo (dT) pellet was suspended in a low
  • the obtained DNA / NA hybrid molecule uses the first strand as a template to synthesize a second strand.
  • the multiple cloning site on the ZAP phage vector allows insertion of nucleic acid fragments up to 10Kb. After entering the host, the plasmid portion can be cut from the vector to form the plasmid vector Bl UeS cript . Multiple cloning site of the vector points on both sides and have small T 3 7 phage promoters, can be used for probe synthesis and sequence analysis.
  • the cDNA fragment inserted into the vector can express an antigenic and biologically active fusion protein.
  • the experiment details are as follows-add 100ng cDNA, 0.5 ⁇ 110X ligase buffer, 0.5 ⁇ 110mmol / L y-ATP (pH7.5), lul ZAP phage vector (lug / ul), o.5ul T4 DNA ligase into the centrifuge tube (4u / ul), add deionized water to a total volume of 5 ⁇ 1. Connect at 12 ° C for 16 hours.
  • the ligation product requires packaging of the coat protein to produce a recombinant phage with transfection activity. Quickly remove the packaged protein from -70 ° C. After dissolving, add 1ul of the reaction reagent to the 25ul packaged protein, mix the hooks, and react at 22 ° C for 2 hours. Add 500ul SM buffer (0.1M NaCl, 0.08M MgS0 4 .7H 2 0, 0.05M Tris-HCl, 0.01% gelatin), 20ul chloroform. This mixture is the original cDNA library.
  • the titer of the cDNA library is expressed as the number of plaque plaques (pfli / ml).
  • pf / ml (number of plaques x dilution factor) X 1000 / dilution amount (ul).
  • a cDNA library with a capacity of more than 1 ⁇ 10 6 clones can ensure that it contains each single copy of the mRNA.
  • the library capacity of the adult aortic cDNA library of the present invention is 2.4 ⁇ 10 6 independent recombinant clones.
  • the constructed cDNA library can be used directly for screening, but it is not stable. Because non-wild-type phage are susceptible to inactivation, they need to be amplified to facilitate multiple screenings. Take 5 ⁇ 10 4 phages to transfect the XLl-Blue MRF host bacteria, plate, incubate at 37 ° C for 8-10 hours, and then add 8 ml SM buffer to a 150mm dish, and incubate at 4 ° C overnight. Centrifuge and collect the supernatant to obtain an amplified cDNA library. Add 0.3% chloroform and store at 4 ° C. Long-term storage requires adding 7% dimethyl sulfoxide (DMSO) and freezing at -70 ° C.
  • DMSO dimethyl sulfoxide
  • cDNA library is plated, and the plaque density is 200-500 clones / dish (150mm). Pick a single clear plaque and transfer it into a sterile centrifuge tube containing 75ul SM buffer and 5ul chloroform. ° C. Mix and centrifuge before use, take 5ul of the supernatant, and use the 3 'end primer (5' CCAAGCTCGAAATTAACCCTCAC 3 ') and 5' end primer (5 'CAGTCAATTGTAATACGACTCACT 3') of ZAP phage vector for PCR amplification. The total reaction volume is 50ul.
  • the amplification parameters were pre-denatured at 94 ° C for 3 minutes; then 94 ⁇ 45 seconds, 55 ° C for 30 seconds, and 72 ° C for 3 minutes, a total of 30 cycles; 72 ⁇ extended for 5-10 minutes.
  • AJBI377 automatic sequencer (ABI PRISM TM 377 DNA sequencer) and automatic sequencing kit (BigDye TM Terminator Ready Reaction Mix) were purchased from the company P £ ⁇ . Sequencing using dideoxy chain termination according to recommended conditions of use.
  • CY5-fluoroscein Using non-radioactive CY5-fluoroscein as a marker, universal sequencing primers T 3 (5 'ATT AAC CCT CAC TAA AGG GA 3') and T 7 (5 'TAA TAC GAC TCA CTA TAG GG3') for sequencing The amount of primer in each sample is 5 pmol/ul.
  • the sequencing template is a PCR product in an amount of about 30-100 ng.
  • the PCR amplification parameters are 94 ° C for 3-5 minutes; 94 ° C for 30 seconds, 50 ° C for 15 seconds, 72 ° C for 1 minute, 20 cycles; 94 ° C 30 Second, 72 ° C for 1 minute, 15 cycles; 72 ⁇ for 5 minutes.
  • the DNA product was electrophoresed on 8 mol / L urea, 6% polyacrylamide gel plate. Voltage 1500V, power 34W, electrophoresis 250-300 minutes (ALF Express TM DNA sequence, pHarmacia, Sweden).
  • the BEST (Basic Local Alignment Search Tool) software of the American Bioinformatics Center was used to compare the EST of each cDNA clone with the GenBank / EMBL DDBJ database for homology (http://www.ncbi.nlm.nih.gov). According to the BLAST judgment standard (common standard for most laboratories at home and abroad): A sequence with a homologous sequence less than 100-200 bases and a score less than 100 is the new EST.
  • the EST of Fwap 10576 of the present invention is a new EST. '' 2.4 EST Primer Sequencing
  • the ZAP phage vector can directly transfer the target fragment from the lambda phage vector to the plasmid in the host, and circularize it into a PBK-CMV (with CMV virus early promoter) phagemid.
  • PBK-CMV with CMV virus early promoter
  • the plasmid was extracted with "QIAPrep Spin Miniprep kit” from Germany QIAGEN. Centrifuge at 2400 rpm and 4 ° C for 10 minutes. Collect overnight cultured bacteria. Discard the supernatant, add 25ul buffer Pl (100ul / ml RNaseA, 50mM Tris / HCl, 10mM EDTA, pH8.0) to suspend the bacteria, and transfer to a sterile 1.5ml centrifuge tube. Try to add 250ul buffer P2 (200mM NaOH, 1% SDS), invert the supernatant several times, and mix thoroughly. Add 350ul of buffer solution P3 (3.0M KAc, pH 5.5) and immediately shake the tube 4-6 times.
  • Pl 100ul / ml RNaseA, 50mM Tris / HCl, 10mM EDTA, pH8.0
  • the reaction solution contains BD 4ul, BOB 2ul (400mM Tris-HCl, pH9.0, 10mM Mg Cl 2 ), primers 2 ul (5 pmol/ul), DNA template 30-100 ng, and supplemented with H 2 0 to a final volume of 20ul .
  • the full-length cDNA sequence was determined by the step-by-step method (sequential primer method), that is, the next round of sequencing primers was determined by the terminal bases of the products obtained from the previous round of sequencing.
  • PCR primers were designed with oligo 14.0 software.
  • the Fwapl0576 cDNA is 1083 base pairs in length. It is speculated that the start codon is 213 to 215 nucleotides (ATG) and the stop codon is 681 to 683 nucleotides.
  • the open reading frame is 213 to 683 nucleotides and encodes a polypeptide consisting of 156 amino acid residues. BLAST analysis showed that the gene was located on chromosome 16.
  • Fwapl0576 protein has no sequence homology with the currently inhibited protein. Its protein sequence is characterized by: (A) 1 to 34 Aa is a signal peptide. (B) 2 to 7 Aa (GSTWGS), 19 to 24 Aa (GLVLSL), 46 to 51 Aa (GTAISC), 96 to 101 Aa (GVSPCC), 118 to 123 Aa (GGLQAL) are N-myristoylation sites . (C) 33 to 39 Aa (RARDRDY) is a tyrosine kinase phosphorylation site. (D) 56 to 58 Aa (SSR) are protein kinase C phosphorylation sites. (E) 77 to 80 Aa (NQSN) are N-glycosylation sites. Example 3 Distribution of Fwapl0576 in Normal Tissue
  • MTN membrane multi-tissue membrane containing mRNA from 12 tissues was purchased from Clontech, USA, and used to detect the distribution of Fwapl0576 gene in normal tissues.
  • ⁇ -actin is a housekeeping gene that is expressed uniformly in a variety of tissues and was used as a control in this experiment.
  • 0.6g of agarose gel was weighed and added to 52.2ml of DEPC-treated water, heated to dissolve, and the gel was cooled to 65 V, 6.0ml 10 X MOPS, 1.8ml formaldehyde was added, and the gel was poured. Take 4.5ul (40-60ug) total RNA, add 2. Oul lO X MOPS, 3. 5ul formaldehyde, lOul formamide, mix well, denature at 65 ° C for 15 minutes, and cool on ice for 2 minutes. Join Mix 2.0ul loading buffer. Load at 50 volts for 5 minutes. After all the dye enters the gel, the voltage drop is 40 volts, and the electrophoresis buffer is mixed once every 10 minutes.
  • the gel was washed several times with DEPC-treated water, treated with 50 mM NaOH for 45 minutes, and treated with 20XSSC for 45 minutes.
  • the nylon membrane was first wetted with deionized water and then treated with 20XSSC for 45 minutes. Lay a layer of filter paper on the rubber tray, soak it with 20XSSC to remove air bubbles; place the glue on the rubber tray, and place a plastic sheet hollowed out on it. Carefully place the membrane on the gel to remove air bubbles, and spread two 20XSSC-soaked filter paper on the membrane to remove air bubbles.
  • Upstream primer 5 '-CC GAATTC ATGCACCGGCTCATCTTTGTC- 3'. Protected bases are shown in italics, EcoRI digestion sites are shown in bold. The underlined parts are complementary to positions 107-127 of the Fwapl0576 nucleic acid sequence.
  • PCR reaction system 5.0-fold buffer 5.0ul, 2.0ul DNA, 3.0ul upstream and downstream primers, Taq enzyme l.Oul, Fwapl0576 sequencing plasmid (template) 2.0ul, sterile water 34ul.
  • PCR parameters 94 ° C for 3 minutes; 94 ° C for 3 minutes, 94 ° C for 20 seconds, 6CTC for 30 seconds, 72 ° C for 80 seconds, 30 cycles. 72 ° C for 7 minutes.
  • the PCR product was purified with ammonium acetate / ethanol (1: 5), dissolved in 50ulTE, quantified with agarose, and diluted to 25ng / ⁇ 1.
  • Labeled probe Add the PCR product to a 0.5ml centrifuge tube (denatured by heating at 98 ° C for 4 minutes and cooled on ice for 2 minutes) 25ng, 5ul of 5X labeling buffer, dNTP (no dCTP) 2.0ul, BSA 2.0ul, Klenow Enzyme l.Oul, [a-32P] dCTP 5.0ul, make up to a total volume of 50ul with nuclease-free water. Reaction at room temperature for 1-3 hours.
  • Pre-hybridization Soak the membrane with 6 X SSC for 5 minutes, and stick it to the wall of the hybridization tube to remove air bubbles. Add 6 ml of hybridization solution purchased from Clontech, 68 ° C for 1 hour.
  • Hybridization Discard the hybridization solution, add 6ml of pre-warmed hybridization solution, and add the probe (the probe needs to be denatured by heating at 98 ° C for 4 minutes, and cooled on ice for 2 minutes), 68 for 3 hours.
  • Washing the membrane First wash the membrane with 200ml of Washing Solution I (2XSSC, 0.05% SDS) four times at room temperature for 10 minutes each. Then, wash with 200 ml of washing solution 11 (0.1 IX SSC; 0.1% SDS) at 50 ° C for 20 minutes and 56 ° C for 20 minutes.
  • Washing Solution I 2XSSC, 0.05% SDS
  • Tableting Absorb the liquid with filter paper, wrap it with cling film, and paste it on a piece of filter paper of the same size as the X-ray film. -70 ⁇ exposure time. Wash the tablets.
  • Hybrid membranes containing 8 tumor cell lines were purchased from Clontech, USA, and used to detect the distribution of Fwapl0576 gene in different tumor cell lines. ⁇ -actin served as a control for this experiment.
  • results As shown in Figure 2, among the 8 tumor cell lines examined, the following tissues expressed the Fwapl0576 gene: lung cancer A549 cell line, Burkitt's lymphoma, melanoma G-361 cell line, and lymphocytic leukemia MDL-4 cell line The expression level of chronic myelogenous leukemia K-562 cell line decreased in turn. The structural rectal adenocarcinoma SW480 cell line does not express the Fwapl0576 gene.
  • Example 5 Differences in the expression of Fwapl0576 gene in different cardiomyocytes
  • Fwapl0576 was scarcely expressed in normal adult hearts, Fwapl0576 was expressed in fetal hearts, and ventricular aneurysm tissue in adults showed 20-fold higher expression of Fwapl0576.
  • Example 6 Expression of Fwa P 10576 Gene in Hearts of Normal, Chronic Heart Failure and Subacute Heart Failure Animals
  • SD rats Fifty male Sprague-Dawley (SD) rats (250-300 g / head) were purchased from the animal room of the hospital. The standard blocks were provided by the Beijing Animal Center. Drinking water was tap water, and water and feed were ingested at will by the animals.
  • Ten male Wistar rats (250 g / head) were purchased from the 301 Hospital of the Chinese People's Liberation Army. The feeding conditions were the same as those of the chronic heart failure model.
  • In situ hybridization is based on the principle of base complementarity, and specifically probes into specific mRNA or The DNA hybridizes to reveal genes and expression products in the cell. The response is extremely sensitive, and genes that are expressed only transiently during tissue differentiation can be detected.
  • the hybridization kit DIG RNA Labeling kit (Cat. No.1175025) was purchased from Boehringer Mannheim, Germany.
  • the transcribed linear DNA was extracted with phenol / chloroform and then precipitated with alcohol. Place the RNase-free centrifuge tube on ice, and add 1 ⁇ of purified linear DNA, 2 ⁇ 1 NTP labeling mixture, 2 ⁇ 110 ⁇ transcription buffer, 1 ⁇ RNase inhibitor, 2 l (40u) SP6 or T7 TNA polymerase to the tube. 20 ⁇ 1. Mix well, centrifuge slightly, add 20 u of DNase I without RNA, 37 ° C for 15 minutes. 2 ⁇ 1 of 0.2 mol / L EDTA (pH 8.0) was added to terminate the polymerization reaction.
  • Fresh specimens (rat frozen sections) 0.4cmX0.4cm, rinsed twice with 1XPBS, and placed on the fixed head of the frozen microtome. Sections of 8-10 ⁇ were placed on a glass slide with 1 mg / ml polylysine and allowed to dry, and fixed with 4% paraformaldehyde for 15-20 minutes. Rinse 1 X PBS 2 times for 5 minutes each.
  • the hybridization solution contains 5ml deionized formamide, 2.5ml 20XSSC, 500 ⁇ lOOXDenhardt's solution (10g polysucrose, 10g polyvinylpyrrolidone, 10g bovine serum albumin, 500ml sterilized double distilled water), 500 ul 10% SDS, 100 ⁇ l 10mg / ml denatured salmon sperm DNA, 400 ⁇ DEPC water.
  • X SSC was rinsed three times at room temperature for 10 minutes each. 0. 1 X SSC Rinse twice at 50 ° C for 15 minutes each.
  • the slide was immersed in a washing solution (1M maleic acid, 0.15M NaCl; 0.3% (V / V) Tween-20).
  • 100ml blocking solution blocking agent in the kit is added at 10% (W / V) maleic acid buffer solution (0.1 lrnol / L maleic acid, 0. 15mol / L NaCl), when using 1:10 dilution) and incubate for 30 minutes.
  • Add 20ml of detection solution 0.1M Tris-HC1, 0.1M NaCl, pH 9.5
  • equilibrate for 2-5 minutes.
  • 10 ml of newly prepared coloring solution 200 ml of NBT / BCIP in 10 ml of detection solution
  • protect from light and do not shake.
  • a recombinant correct prokaryotic expression (ptrxfus) plasmid was used to extract and express the fusion protein from the supernatant, and the target gene band was determined by 10% denaturing polyacrylamide electrophoresis. Western blot was used to identify the target protein and the serum obtained from the animals was immunized.
  • Paraffin sections were 5 ⁇ m and attached to APES slides coated with polylysine, and baked at 75 ° C for 2 hours. After dewaxing xylene, it was sliced into water after gradient alcohol. 3% H 2 0 2 within 10 minutes. Wash three times with distilled water, put it into the EDTA antigen retrieval solution (pH 8. 0), and bake in a microwave oven (96 ° C-98 ° C) for 10 minutes. Cool at room temperature for 20-30 minutes and wash three times with distilled water. Add 1X PBS buffer for 5 minutes. 10% normal rabbit serum for 20 minutes. Add appropriately diluted primary antibody and incubate overnight at 4 ° C.
  • Brain tissue in stroke patients and non-stroke patients Brain tissue sections were soaked in formalin for 7 days, then dehydrated to make paraffin sections.
  • Vector pTrxFus (available from Invitrogen). Take 20ul pTrxFus vector, 10X buffer 4.0ul, l.Oul Xhol, l.Oul Smal, 14ul sterile water, and digest with 37 ° C for 16 hours. Purify the digested product.
  • Forward primer 5'CGG GAC CGG GAT TAC C 3 ', reverse primer 5, ATG TCT AGA TCA TAG AGC ACG AA 3'.
  • l.Oul pTrxFus digestion product 3. Oul PCR digestion product, l.Oul 10X buffer solution, l.Oul T4 ligase, 4ul sterile water, 16 ligation for 6 hours.
  • RM-Amp medium rich medium containing ampicillin, consisting of 6gN HP0 4 (anhydrous), 3gKH 2 PO 4 , 0.5gNaCl, lgNH 4 Cl, 20g Casamino Acids (acid casamino), 0.095gMgCl 2), 30 ° C shaking (220_250rpm) overnight.
  • the clones identified as positive by sequencing ( P TrxSX576) were stored in 15% glycerol and stored at _20C.
  • Inoculate 50ul of bacterial solution P TrxSX576) in 5ml RM-Amp medium, shake (220-250rpm) at 30 ° C overnight. Take 250ul of overnight bacteria and inoculate 5ml IM induction medium (6g anhydrous N HP0 4 , 3g KH 2 PO 4 .0.5gNaCl, lg NH 4 C1, 2g acid hydrolyzed casein, 0.095g MgCl 2 ), shake at 30 ° C (220- 250 rpm) for 3 hours, take it out, and measure 0D550 to about 0.5.
  • TRXSX576-expressing strains were activated at 220-250 rpm at 30 ° C for 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, and 6 hours, respectively, and then tryptophan was added to a final concentration of 100 ug / ml. After 4 hours of induction, the expression of recombinant protein was detected by polyacrylamide gel electrophoresis. The results are shown in FIG. 5A.
  • the optimal activation time was used to activate the TRXSX576 expressing strain, and then tryptophan was added to a final concentration of 100ug / ml, 37.
  • C 220-250rpm induced 0 hours, 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours.
  • Polyacrylamide gel electrophoresis was used to detect the expression of recombinant protein TRXSX576. The results are shown in Figure 5B.
  • Fusion protein release Under the optimal activation time and induction time, express the fusion protein, release it by ultrasound, measure
  • Equilibrium resin take 2ml Resin (total ethanol plus 1 ⁇ 21) for natural precipitation, discard ethanol; resuspend with 4-8ml RB (20mM ⁇ , ⁇ mercaptoethanol), leave it to settle naturally, discard the buffer carefully; add 4 8ml RB (20mM resuspended, gently shake at room temperature for 30-60 minutes, carefully discard the supernatant; resuspend with 4-8ml RB (without ⁇ ME), leave it to settle naturally, discard the buffer carefully; repeat The above steps.
  • Polyacrylamide gel electrophoresis identification Take 20ul of polyacrylamide gel electrophoresis to identify each tube (the method is the same as above). 8.7 Dialysis and Concentration of Fusion Proteins
  • Antisense recombinant expression vectors of p C DNA-Fwapl0576 sense and pcDNA-Fwapl0576 were constructed using molecular cloning technology and with reference to the methods of the previous examples.
  • the cells are dropped into a blood cell counting plate and placed on an optical microscope (Nikon Japan) to count the cells.
  • the calculation formula of the cell number is:
  • the calculation formula of the cell number is:

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Abstract

The application disclosed a cell proliferation factor-Fwap10576 polypeptide and the polynucleotide encoding the polypeptide and a process for producing the polypeptide by recombinant method, the antibody and antagonist against the polypeptide and a composition comprising Fwap10576 polypeptide and its usage in the treatment of angiocardiopathy are also disclosed. The application further disclosed a diagnostic method by detecting the mutation in the nucleic acid sequence encoding Fwap10576 or the amount of Fwap10576 in the sample or the changes of autoantibody of Fwap10576 gene product. The cell proliferation factor of the present application is of human resource.

Description

细胞增殖因子 Fwapl0576  Cell proliferation factor Fwapl0576
发明领域 Field of invention
本发明涉及最新鉴定的多核苷酸和由其编码的多肽, 这种多核苷酸和多肽的生产 方法以及这些多核苷酸和多肽的用途。 本发明的多肽已被鉴定为细胞增殖因子, 下文 有时称为 "Fwap'10576"。 本发明的多核苷酸和多肽是人类来源的。 发明背景 The present invention relates to newly identified polynucleotides and polypeptides encoded thereby, methods for producing such polynucleotides and polypeptides, and uses of these polynucleotides and polypeptides. The polypeptide of the present invention has been identified as a cell proliferation factor, and is hereinafter sometimes referred to as "F wa p'10576". The polynucleotides and polypeptides of the invention are of human origin. Background of the invention
心脑血管病是威胁人类健康的重大疾病之一。 据统计, 每年约有 260万中国人死 于此病, 平均每 12秒就有一位同胞被该病夺去生命。 在中国, 心脑血管病死亡人数占 总死亡人数的比率从 1957年的 12. 1%上升至 1990年的 35. 8%, 升高了 2. 9倍。 据世界 银行预测: 到 2020年, 全世界心脑血管病死亡人数占总死亡人数的比率将从 1990年 的 28. 9%升至 36. 3%, 其中 70%的心脑血管病发生在发展中国家。 中国现有高血压患者 1亿多人, 并以每年 350万人的速度递增; 脑中风致残者 600万人, 并以每年 150万的 速度递增; 冠心病患者 100万人, 并以每年 50万的速度递增; 此外, 还有心肌病患者 300万人。 因此, 心脑血管病的防治对减轻人类经济负担, 确保人体健康具有十分重要 的意义。  Cardio-cerebrovascular disease is one of the major diseases that threaten human health. According to statistics, about 2.6 million Chinese die each year from the disease, and on average every 12 seconds a compatriot is killed by the disease. In China, the ratio of cardiovascular deaths to total deaths increased from 12.1% in 1957 to 35.8% in 1990, an increase of 2.9 times. According to the prediction of the World Bank: By 2020, the proportion of deaths from cardiovascular and cerebrovascular diseases in the world will increase from 28.9% in 1990 to 36.3%, of which 70% of cardiovascular and cerebrovascular diseases occur China. There are more than 100 million people with hypertension in China, and it is increasing at an annual rate of 3.5 million; 6 million people with stroke are disabled, and it is increasing at an annual rate of 1.5 million; 1 million people with coronary heart disease, and at an annual rate of 50 The rate of increase is 10 million; In addition, there are 3 million patients with cardiomyopathy. Therefore, the prevention and treatment of cardiovascular and cerebrovascular diseases is of great significance to reduce human economic burden and ensure human health.
心脑血管病的治疗经历了四个大的阶段: 1920年代, 循环动力学的研究揭示了心 脏是一个 "泵", 由此奠定了心力衰竭的治疗基础; 60-70 年代, 对心血管病危险因素 的认识及处理, 使西方国家心脏病的发病率下降了近 40%; 1970 年, 对心肌细胞电生 理学的研究, 提供了抗心律失常、 电生理检查及治疗的新方法; 80年代末到 90年代 初, 对血管生物学的认识, 产生了心脏介入治疗的新方法。  The treatment of cardio-cerebral vascular disease has gone through four major stages: In the 1920s, the study of circulatory dynamics revealed that the heart is a "pump", which laid the foundation for the treatment of heart failure; in the 1960s and 1970s, cardiovascular diseases The understanding and treatment of risk factors have reduced the incidence of heart disease in western countries by nearly 40%. In 1970, the study of the electrophysiology of myocardial cells provided new methods for antiarrhythmia, electrophysiology examination and treatment; in the late 1980s By the early 1990s, knowledge of vascular biology had led to new approaches to cardiac interventional therapy.
心衰、 抗心律失常、 及介入治疗对抢救心脑血管病人的生命, 提高其生活质量起 到了积极作用。 然而, 由于这些方法仅针对症状进行治疗, 没有从根本上触及病因, 所以治疗针对性不强。 虽然延长了病人的寿命, 但没有真正达到预防和治愈的目的。 因此, 在分子生物学的水平进行研究, 查明心脑血管病的致病因素及发病机理, 有望 在该病的治疗方面取得突破性进展, 达到 根本上遏制心脑血管病的目的。  Heart failure, antiarrhythmia, and interventional treatment have played a positive role in saving the lives and improving the quality of life of patients with cardiovascular and cerebrovascular diseases. However, because these methods only treat the symptoms and do not fundamentally touch the cause, the treatment is not targeted. Although the patient's life was prolonged, the purpose of prevention and cure was not really achieved. Therefore, research at the level of molecular biology to find out the causative factors and pathogenesis of cardio-cerebrovascular disease is expected to make breakthrough progress in the treatment of the disease and achieve the goal of fundamentally curbing cardio-cerebrovascular disease.
cDNA文库是生物工程领域的重要研究工具之一。 通常从细胞中提取 mRNA, 通过反转录酶合成 mRNA的 DNA拷贝(即 cDNA, Complementary DNA)。单链 cDNA 分子在 DNA聚合酶的作用转变成双链 DNA分子, 然后再插入载体, 转化到宿主菌 中长成克隆。这样的每个克隆只包含特定的 mRNA信息,这样的一套克隆就称为 cDNA 文库。  cDNA library is one of the important research tools in the field of biological engineering. MRNA is usually extracted from cells and a DNA copy of the mRNA (ie, cDNA, Complementary DNA) is synthesized by reverse transcriptase. Single-stranded cDNA molecules are transformed into double-stranded DNA molecules by the action of DNA polymerase, and then inserted into a vector, transformed into host bacteria and grown into clones. Each such clone contains only specific mRNA information, and such a set of clones is called a cDNA library.
由于 cDNA不含内含子, 从 cDNA文库中可以直接筛选到相应的表达基因, 故相 对基因库而言, cDNA文库具有操作简单、 使用方便的优点。 人体不同细胞表达基因 的差异决定了其组织和器官表型的差异, 从人主动脉 cDNA文库中分离和鉴定特异表 达基因, 特别是分离和鉴定疾病相关基因, 是研究遗传性心脑血管病的有效方法之一 发明概述 Since the cDNA does not contain introns, the corresponding expressed genes can be directly selected from the cDNA library. Therefore, compared with the gene library, the cDNA library has the advantages of simple operation and convenient use. Differences in genes expressed in different human cells determine differences in tissue and organ phenotypes. Isolate and identify specific tables from human aortic cDNA libraries Gene, especially disease-related genes, is one of the effective methods for studying hereditary cardiovascular and cerebrovascular diseases
按照本发明的一个方面, 提供了一种新的成熟多肽 Fwapl0576 以及具有生物学活 性并在诊断或治疗上有用途的 Fwapl0576 的片段、 类似物和衍生物。 本发明的多肽是 人类来源的。  According to one aspect of the present invention, a novel mature polypeptide Fwapl0576 and fragments, analogs, and derivatives of Fwapl0576 that are biologically active and useful in diagnostic or therapeutic applications are provided. The polypeptide of the invention is of human origin.
按照本发明的另一个方面, 提供了编码本发明多肽的分离的核酸分子, 包括 mRNA、 DNA、 cDNA、 基因组 DNA, 以及具有生物学活性并在诊断学或治疗学上有用途的该核酸 分子的片段、 类似物和衍生物。  According to another aspect of the present invention, there is provided an isolated nucleic acid molecule encoding a polypeptide of the present invention, including mRNA, DNA, cDNA, genomic DNA, and the nucleic acid molecule having biological activity and useful in diagnostics or therapeutics. Fragments, analogs and derivatives.
按照本发明的另一个方面, 提供了用重组技术生产 Fwapl0576 多肽的方法, 该方 法包括培养含有编码本发明多肽的核酸序列的重组原核和 /或真核宿主细胞。  According to another aspect of the present invention, there is provided a method for producing a Fwapl0576 polypeptide by recombinant technology, which method comprises culturing a recombinant prokaryotic and / or eukaryotic host cell containing a nucleic acid sequence encoding a polypeptide of the present invention.
按照本发明的另一个方面, 提供了将 Fwapl0576多肽或编码 Fwapl0576多肽的多 核苷酸用于治疗的方法。 例如, 治疗心脑血管增生性疾病, 抑制肿瘤形成。  According to another aspect of the present invention, there is provided a method for treating a Fwapl0576 polypeptide or a polynucleotide encoding a Fwapl0576 polypeptide. For example, treating cardiovascular and cerebrovascular proliferative diseases and inhibiting tumor formation.
按照本发明的另一个方面, 提供了这些多肽的抗体。  According to another aspect of the invention, antibodies to these polypeptides are provided.
按照本发明的另一个方面, 提供了所述多肽的拮抗剂, 其可用来抑制这些多肽的 作用。  According to another aspect of the invention, there are provided antagonists of said polypeptides, which can be used to inhibit the effects of these polypeptides.
按照本发明的另一个方面, 提供了与本发明核酸序列中的突变、 以及与本发明的 多肽异常表达有关的疾病或疾病易感性的诊断方法。  According to another aspect of the present invention, there is provided a method for diagnosing a disease or disease susceptibility related to mutations in a nucleic acid sequence of the present invention and abnormal expression of a polypeptide of the present invention.
按照本发明的另一个方面, 提供了将本发明的多肽或编码这种多肽的多核苷酸、 在体外用于科学研究、 DNA合成以及人工构建 DNA载体的方法。  According to another aspect of the present invention, there is provided a method for using a polypeptide of the present invention or a polynucleotide encoding such a polypeptide for scientific research in vitro, DNA synthesis, and artificially constructing a DNA vector.
根据本文的教导, 上述方面及相关方面对本领域的技术人员而言是显而易见的。 本发明是通过如下技术方案实现的。 提取 mRNA, 反转录成 cDNA, 构建成人主动 脉 cDNA文库。 从文库中获取 Fwapl0576的基因片段, 通过 EST拼接得到 Fwapl0576的 全长 cDNA序列。 进而研究 Fwapl0576基因在不同组织的表达与分布, 研究 Fwapl0576 多肽的活性与功能。 发明详述  The above aspects and related aspects will be apparent to those skilled in the art from the teachings herein. The present invention is achieved through the following technical solutions. MRNA was extracted and transcribed into cDNA to construct an adult active vein cDNA library. Fwapl0576 gene fragment was obtained from the library, and the full-length cDNA sequence of Fwapl0576 was obtained by EST splicing. Further study the expression and distribution of Fwapl0576 gene in different tissues, and study the activity and function of Fwapl0576 peptide. Detailed description of the invention
按照本发明的一个方面, 本发明提供了一种分离的核酸(多核苷酸)序列, 其编码 具有推定的、 如 SEQ ID NO: 2所示氨基酸序列的成熟多肽。 本发明的多核苷酸是从成 人主动脉的 cDNA文库中发现的。 其定位于人体细胞的第 16号染色体上。 其包含一个 开放阅读框架, 可以编码具有 156 个氨基酸残基的多肽。 同源性分析表明 Fwapl0576 多肽与目前的已知蛋白没有序列同源性。  According to one aspect of the present invention, the present invention provides an isolated nucleic acid (polynucleotide) sequence which encodes a mature polypeptide having a putative amino acid sequence as shown in SEQ ID NO: 2. The polynucleotide of the present invention is found from a cDNA library of an adult aorta. It is located on chromosome 16 in human cells. It contains an open reading frame that encodes a polypeptide with 156 amino acid residues. Homology analysis showed that the Fwapl0576 polypeptide has no sequence homology with currently known proteins.
推测的 Fwap 10576多肽由 156个氨基酸组成。 其序列特征为: (A) 1至 34 Aa为 信号肽; (B) 2至 7 Aa (GSTWGS ) , 19至 24 Aa (GLVLSL) , 46至 51 Aa (GTAISC), 96 至 101 Aa (GVSPCC) , 118至 123 Aa (GGLQAL) 为 N-豆蔻酰化位点: (C) 33至 39 Aa (RARDRDY) 为酪氨酸激酶磷酸化位点; (D) 56至 58 Aa (SSR) 为蛋白激酶 C磷酸化 位点; (E) 77至 80 Aa (NQSN) 为 N-糖基化位点。 分析表明 Fwapl0576多肽的分子 量为: 16700. 5道尔顿, 等电点为 8. 11 (http: //www, expasy. ch/tools/protpm>Tm. html ) , 细 胞外的蛋白约占蛋白总量的 33. 3% (http:〃 psort. nibb. ac. .ip/fo:nn2. html ) 。 The putative Fwap 10576 polypeptide consists of 156 amino acids. Its sequence characteristics are: (A) 1 to 34 Aa is a signal peptide; (B) 2 to 7 Aa (GSTWGS), 19 to 24 Aa (GLVLSL), 46 to 51 Aa (GTAISC), 96 To 101 Aa (GVSPCC), 118 to 123 Aa (GGLQAL) are N-myristoylation sites: (C) 33 to 39 Aa (RARDRDY) is a tyrosine kinase phosphorylation site; (D) 56 to 58 Aa (SSR) is a protein kinase C phosphorylation site; (E) 77 to 80 Aa (NQSN) is an N-glycosylation site. The analysis showed that the molecular weight of the Fwapl0576 polypeptide was 16700. 5 Daltons and the isoelectric point was 8. 11 (http: // www, expasy. Ch / tools / protpm> Tm. Html). 33.3% of the volume (http: 〃 psort. Nibb. Ac. .Ip / fo: nn2. Html).
本发明的多核苷酸可以是 RNA形式或 DNA形式, 其中 DNA包括 CDNA、 基因组 DNA 和合成 DNA。 DNA 可以是双链或单链的, 如果是单链的, 则可以是编码链或非编码(反 义)链。 编码成熟多肽的编码序列可以和 SIQ ID NO : 1 (全长 1083个核苷酸) 所示的 编码序列 (213至 683位核苷酸) 相同; 或者, 由于遗传密码的丰余性或简并性, 编码 序列也可以不同与 SIQ ID NO: 1所示的编码序列。 The polynucleotide of the present invention may be in the form of RNA or DNA, wherein DNA includes C DNA, genomic DNA, and synthetic DNA. DNA can be double-stranded or single-stranded. If it is single-stranded, it can be a coding or non-coding (antisense) strand. The coding sequence encoding the mature polypeptide may be the same as the coding sequence (nucleotides 213 to 683) shown in SIQ ID NO: 1 (1083 nucleotides in total length); or, due to the redundancy or degeneracy of the genetic code The coding sequence may be different from the coding sequence shown in SIQ ID NO: 1.
编码 SIQ ID NO: 2 所示成熟多肽的多核苷酸可以包括: 成熟多肽的编码序列; 成熟多肽的编码序列和附加的编码序列, 如编码多肽前导序列或分泌序列的多核苷酸; 成熟多肽的编码序列(以及任选的附加编码序列)和非编码序列, 如内含子或成熟多肽 编码序列 5'和 /或 3'端的非编码序列。  The polynucleotide encoding the mature polypeptide shown by SIQ ID NO: 2 may include: the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and additional coding sequences, such as the polynucleotide encoding the leader or secretion sequence of the polypeptide; Coding sequences (and optionally additional coding sequences) and non-coding sequences, such as non-coding sequences at the 5 'and / or 3' end of the intron or mature polypeptide coding sequence.
因此, 术语 "编码多肽的多核苷酸"包括仅含有多肽编码序列的多核苷酸以及含 有附加的编码和 /或非编码序列的多核苷酸。  Accordingly, the term "polynucleotide encoding a polypeptide" includes polynucleotides containing only polypeptide coding sequences and polynucleotides containing additional coding and / or non-coding sequences.
本发明还涉及上述多核苷酸的变异体, 其编码推定的、 具有 SIQ ID NO: 2 所示 氨基酸序列的多肽片段、 类似物及衍生物。 所述变异体可以是天然产生的该多核苷酸 的等位基因变异体, 或者是非天然产生的变异体。 正如本领域已知的, 等位基因变异 体是一段多核苷酸的另一种形式, 其可以带有一个或多个核苷酸的取代、 缺失或添加, 而实质上不改变所编码多肽的功能。  The present invention also relates to a variant of the above-mentioned polynucleotide, which encodes a putative polypeptide fragment, analog, and derivative having the amino acid sequence shown in SIQ ID NO: 2. The variant may be a naturally occurring allelic variant of the polynucleotide, or a non-naturally occurring variant. As known in the art, an allelic variant is another form of a polynucleotide that can carry substitutions, deletions, or additions of one or more nucleotides without substantially altering the encoding of the polypeptide. Features.
因此, 本发明包括能够编码与 SIQ ID NO: 2 所示成熟多肽具有相同氨基酸序列 的多核苷酸, 还包括能够编码 SIQ ID NO : 2所示成熟多肽之片段、 衍生物和类似物的 多核苷酸变异体。 这些变异体包括缺失变异体、 取代变异体、 添加或插入变异体。  Therefore, the present invention includes a polynucleotide capable of encoding the same amino acid sequence as the mature polypeptide shown by SIQ ID NO: 2, and also includes a polynucleoside capable of encoding fragments, derivatives, and analogs of the mature polypeptide shown by SIQ ID NO: 2. Acid variant. These variants include deletions, substitutions, additions or insertions.
本发明也包括这样的多核苷酸, 其中成熟多肽的编码序列可以在相同的阅读框架 中,与有助于多肽由宿主细胞表达及分泌的多核苷酸 (如产生前导序列的多核苷酸) 相 融合。 前导序列作为分泌序列而控制多肽从细胞中转运。 具有前导序列的多肽是前体 蛋白(preprotein) , 由宿主细胞切割其前导序列后可以产生成熟多肽。 本发明的多核 苷酸也可以编码蛋白原(proprotein), 蛋白原是具有原序列(prosequence)的成熟蛋 白, 是 5'端附加了氨基酸残基的成熟蛋白, 是一种无活性形式。 切除原序列后, 可以 产生有活性的成熟蛋白。  The present invention also includes a polynucleotide in which the coding sequence of a mature polypeptide can be in the same reading frame as a polynucleotide that facilitates expression and secretion of the polypeptide from a host cell (such as a polynucleotide that produces a leader sequence) Integration. The leader sequence acts as a secretory sequence to control the transport of the polypeptide from the cell. A polypeptide having a leader sequence is a preprotein, and a mature cell can be produced by cleavage of the leader sequence by a host cell. The polynucleotide of the present invention may also encode a proprotein, which is a mature protein with a prosequence, a mature protein with an amino acid residue added at the 5 'end, and is an inactive form. After excision of the original sequence, an active mature protein can be produced.
因此, 本发明的多核苷酸可以编码一种成熟蛋白, 也可以编码具有原序列的蛋白, 还可以编码既有原序列(prosequence)又有前导序列(presequence)的蛋白质。  Therefore, the polynucleotide of the present invention can encode a mature protein, can also encode a protein with an original sequence, and can also encode a protein having both a prosequence and a leader sequence.
本发明的多核苷酸还包括在同一读框中与标记序列融合的编码序列, 标记序列可 用于纯化本发明的多肽。 例如, 当宿主细胞为细菌时, 标记序列可以是由 pQE-9 载体 提供的、 用于纯化融合产物的六组氨酸。 或者, 当宿主为哺乳动物细胞 (如 C0S-7细胞) 时, 标记序列可以是血细胞凝集素 (HA), HA标记对应于从流感血凝集蛋白衍生的一个 表位(Wilson, I., 等, 细胞, 37 : 767 (1984) )。 The polynucleotide of the present invention also includes a coding sequence fused to a marker sequence in the same reading frame, and the marker sequence can be used for purifying the polypeptide of the present invention. For example, when the host cell is a bacterium, the marker sequence can be a pQE-9 vector Hexahistidine provided for purification of fusion products. Alternatively, when the host is a mammalian cell (such as a COS-7 cell), the marker sequence may be hemagglutinin (HA), and the HA tag corresponds to an epitope derived from influenza hemagglutinin (Wilson, I., etc. Cell, 37: 767 (1984)).
术语 "基因"是指与产生多肽有关的 DNA片段, 其包括编码区之前和之后的区域, 以及在各个编码区段 (外显子)之间的间插序列(内含子)。  The term "gene" refers to a DNA fragment related to the production of a polypeptide, which includes regions before and after the coding region, and intervening sequences (introns) between individual coding segments (exons).
本发明全长基因的片段可以用作 cDNA 文库的杂交探针, 用来分离全长基因和与 该基因有高度同源性或相似生物活性的其它基因。所说的探针优选具有至少 30个碱基, 并且可以含有 50个或更多个碱基。 所述探针也可以用来鉴别相应于全长转录物的 cDNA 克隆和含有完整基因的一个或多个基因组克隆。 其中, 完整基因包括调节序列、 启动 子序列、 外显子和内含子。 例如可以根据已知的 DNA序列合成寡核苷酸探针, 进而分 离出基因的编码部分。 与本发明基因序列互补的、 标记的寡核苷酸探针可以用来从人 类 cDNA、 基因组 DNA或 mRNA文库中筛选与其杂交的文库成员。  The fragment of the full-length gene of the present invention can be used as a hybridization probe for a cDNA library to isolate the full-length gene and other genes with high homology or similar biological activity to the gene. The probe preferably has at least 30 bases, and may contain 50 or more bases. The probes can also be used to identify cDNA clones corresponding to full-length transcripts and one or more genomic clones containing complete genes. Among them, the complete gene includes regulatory sequences, promoter sequences, exons and introns. For example, oligonucleotide probes can be synthesized based on known DNA sequences, and the coding portion of the gene can be isolated. A labeled oligonucleotide probe that is complementary to the gene sequence of the present invention can be used to screen a library member for hybridization from a human cDNA, genomic DNA, or mRNA library.
本发明还涉及与本发明的多核苷酸杂交的核酸序列。 条件是两个序列间具有至少 85%, 优选至少 90%, 更优选至少 95%的同源性。 本发明特别涉及在严格条件下与本发 明的多核苷酸杂交的多核苷酸。 本文所用术语 "严格条件"是指仅在序列间具有至少 95%, 优选具有至少 97%的同源性时杂交才会发生。 与上述序列杂交的多核苷酸可以编 码与本发明成熟多肽具有相同生物学功能或活性的多肽。  The invention also relates to a nucleic acid sequence that hybridizes to a polynucleotide of the invention. Provided that the two sequences have at least 85% homology, preferably at least 90%, and more preferably at least 95%. The invention particularly relates to polynucleotides that hybridize to the polynucleotides of the invention under stringent conditions. As used herein, the term "stringent conditions" means that hybridization occurs only when there is at least 95%, preferably at least 97% homology between sequences. A polynucleotide that hybridizes to the above sequence can encode a polypeptide having the same biological function or activity as the mature polypeptide of the present invention.
此外, 与本发明的多核苷酸具有同源性并能够杂交的多核苷酸可以具有至少 20 个碱基, 优选至少 30个碱基, 更优选至少 50个碱基, 其可以保留或不保留活性。 这 样的多核苷酸可以用作 SEQ ID N0: 1 的探针, 用于回收多核苷酸、 作为诊断探针或作 为 PCR引物。  In addition, a polynucleotide having homology to the polynucleotide of the present invention and capable of hybridizing may have at least 20 bases, preferably at least 30 bases, more preferably at least 50 bases, which may or may not retain activity . Such a polynucleotide can be used as a probe of SEQ ID NO: 1 for recovering the polynucleotide, as a diagnostic probe, or as a PCR primer.
因此, 本发明涉及与编码 SEQ ID NO: 2所示多肽的多核苷酸具有至少 85%, 优选 至少 90%, 更优选至少 95%同源性的多核苷酸及其片段 (所述片段具有至少 30个碱基, 优选至少 50个碱基), 以及由这些多核苷酸编码的多肽。  Therefore, the present invention relates to a polynucleotide having at least 85%, preferably at least 90%, and more preferably at least 95% homology with a polynucleotide encoding the polypeptide represented by SEQ ID NO: 2 (the fragment has at least 30 bases, preferably at least 50 bases), and polypeptides encoded by these polynucleotides.
根据本发明的另一个发明, 本发明涉及推定的、 具有 SIQ ID N0: 2所示氨基酸序 列的多肽及其片段、 类似物和衍生物。  According to another invention of the present invention, the present invention relates to a putative polypeptide having an amino acid sequence shown in SIQ ID NO: 2 and fragments, analogs and derivatives thereof.
术语"片段"、 "衍生物"和"类似物", 当涉及由 SIQ ID NO: 1编码的多肽或者具有 如 SIQ ID NO: 2所示氨基酸序列的多肽时, 是指基本上保留了所述多肽生物学功能或 活性的多肽。 所说的类似物可以包括蛋白原, 蛋白原经部分切除后可以产生有活性的 成熟多肽。  The terms "fragment", "derivative" and "analog" when referring to a polypeptide encoded by SIQ ID NO: 1 or a polypeptide having an amino acid sequence as shown in SIQ ID NO: 2 mean that the said substance is substantially retained A polypeptide that has a biological function or activity. The analog may include proteinogen, which can produce an active mature polypeptide after partial excision.
本发明的多肽可以是重组多肽, 天然多肽或合成多肽, 优选重组多肽。  The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide or a synthetic polypeptide, preferably a recombinant polypeptide.
所说的多肽 (SIQ ID NO : 2)及其片段、 衍生物或类似物可以是:(i)一种多肽, 其 中一个或多个氨基酸残基被保守或非保守的氨基酸残基(优选保守的氨基酸残基)取 代, 并且被取代的氨基酸残基可以是或不是由遗传密码子编码的, 或者 (ii) 一种多肽, 其中一个或多个氨基酸残基包含取代基, 或者(ii i) 一种多肽, 其中成熟多肽与另一 种化合物融合, 如与增加多肽半衰期的化合物 (例如聚乙烯乙二醇) 融合, 或者(i v) — 种多肽, 其中成熟多肽与附加氨基酸残基融合, 例如与前导或分泌序列融合, 又如与 用来纯化成熟多肽的序列融合。 通过本文的教导, 这样的片段、 衍生物及类似物可视 为在本领域技术人员的知识范围内。 The polypeptide (SIQ ID NO: 2) and fragments, derivatives or analogs thereof may be: (i) a polypeptide in which one or more amino acid residues are conservative or non-conservative amino acid residues (preferably conservative) Amino acid residues), and the substituted amino acid residue may or may not be encoded by a genetic codon, or (ii) a polypeptide in which one or more amino acid residues contain a substituent, or (ii i) A polypeptide in which a mature polypeptide is related to another Fusion of a compound, such as a compound that increases the half-life of a polypeptide (such as polyethylene glycol), or (iv) a polypeptide in which a mature polypeptide is fused to an additional amino acid residue, such as to a leader or secretory sequence, and as Sequence fusions for purification of mature polypeptides. With the teachings herein, such fragments, derivatives, and the like can be considered to be within the knowledge of those skilled in the art.
本发明的多肽和多核苷酸优选以分离形式提供的, 并且优选将其纯化成均一 (同 质) 物质。  The polypeptides and polynucleotides of the invention are preferably provided in isolated form, and are preferably purified into homogeneous (homogeneous) materials.
术语"分离的 "是指所述物质脱离了原始环境 (例如, 如果该物质是天然存在的, 则 指天然环境)。 例如, 一种在活体动物中天然存在的多核苷酸或多肽不是分离的, 但从 天然系统中部分或全部共存物质中分离出同样的多核苷酸或多肽则是分离的。 这样的 多核苷酸可以是载体的一部分, 这样的多核苷酸或多肽可以是组合物的一部分, 只要 这种载体或者组合物不是其天然环境的一部分。  The term "isolated" means that the substance is removed from the original environment (for example, the natural environment if the substance is naturally occurring). For example, a polynucleotide or polypeptide naturally occurring in a living animal is not isolated, but the same polynucleotide or polypeptide is isolated from some or all of the coexisting substances in the natural system. Such a polynucleotide may be part of a vector, and such a polynucleotide or polypeptide may be part of a composition as long as the vector or composition is not part of its natural environment.
本发明的多肽包括 SEQ ID NO : 2所示的多肽 (特别是成熟多肽)以及与 SEQ ID NO : 2 的多肽具有至少 85%的同源性, 更优选 90%的同源性, 最优选 95%的同源性的多肽。 本发明还包括上述多肽的片段, 多肽片段通常包含至少 30个, 优选至少 50个氨基酸。  The polypeptide of the present invention includes a polypeptide (especially a mature polypeptide) represented by SEQ ID NO: 2 and a homology of at least 85%, more preferably 90%, and most preferably 95% with the polypeptide of SEQ ID NO: 2 % Of homologous polypeptide. The invention also includes fragments of the above-mentioned polypeptides, which generally comprise at least 30, preferably at least 50 amino acids.
如本领域所熟知的, 两个多肽之间的 "同源性"是通过将一个多肽的氨基酸序列 及其保守氨基酸取代与另一个多肽比较而确定的。  As is well known in the art, "homology" between two polypeptides is determined by comparing the amino acid sequence of one polypeptide and its conservative amino acid substitutions to another polypeptide.
通过多肽合成, 本发明的多肽片段 (或部分多肽) 可用于生产全长多肽。 此片段 可用作产生全长多肽的中间体。 同样的, 本发明的多核苷酸片段可以用于合成本发明 的全长多核苷酸。  Through polypeptide synthesis, the polypeptide fragments (or partial polypeptides) of the present invention can be used to produce full-length polypeptides. This fragment can be used as an intermediate to produce a full-length polypeptide. Similarly, the polynucleotide fragments of the present invention can be used to synthesize full-length polynucleotides of the present invention.
根据本发明的另一个方面, 涉及含有本发明多核苷酸的载体, 用本发明的载体基 因工程化的宿主细胞, 以及通过重组技术产生本发明多肽的方法。  According to another aspect of the present invention, it relates to a vector containing a polynucleotide of the present invention, a host cell engineered with the vector gene of the present invention, and a method for producing a polypeptide of the present invention by recombinant technology.
宿主细胞是用本发明的载体经基因工程化 (转导、 转化或转染) 而产生的。 所说 的载体可以是克隆或表达载体。 载体可以是质粒、 病毒颗粒和噬菌体等形式。 工程宿 主细胞可以在经改良适于激活启动子、 筛选转化体或扩增本发明 Fwapl0576 基因的常 规营养培养基中培养。 培养条件 (如温度和 pH值) 是由不同的宿主细胞决定的, 这些 对本领域技术人员而言是显而易见的。  Host cells are produced using the vectors of the present invention by genetic engineering (transduction, transformation or transfection). The vector may be a cloning or expression vector. Vectors can be in the form of plasmids, virus particles, and phages. Engineering host cells can be cultured in conventional nutrient media modified to activate promoters, screen transformants, or amplify the Fwapl0576 gene of the invention. Culture conditions (such as temperature and pH) are determined by different host cells, and these will be apparent to those skilled in the art.
通过重组技术, 本发明的多核苷酸可以用于生产多肽。 多核苷酸可以包含在任何 一种适于表达多肽的载体中。 这样的载体包括染色体来源的、 非染色体来源的和合成 的 DNA序列。 例如 SV40衍生物, 细菌质粒, 噬菌体 DNA, 杆状病毒, 酵母质粒, 从质 粒和噬菌体 DNA结合得到的载体, 病毒 DNA (如牛痘、 腺病毒、 家禽痘病毒、 和假狂犬 病病毒)。 此外, 还可以使用其它载体, 只要其可以在宿主中复制并存活。  By recombinant techniques, the polynucleotides of the invention can be used to produce polypeptides. The polynucleotide may be contained in any vector suitable for expressing a polypeptide. Such vectors include chromosomal-derived, non-chromosomal-derived and synthetic DNA sequences. Examples include SV40 derivatives, bacterial plasmids, phage DNA, baculovirus, yeast plasmids, vectors obtained by combining plasmid and phage DNA, and viral DNA (such as vaccinia, adenovirus, poultry pox virus, and pseudorabies virus). In addition, other vectors can be used as long as they can replicate and survive in the host.
可以用多种方法将合适的 DNA序列插入到载体中。 一般来说, 是用本领域已知的 方法将 DNA序列插入到适当的限制性核酸内切酶位点中。  Various methods can be used to insert the appropriate DNA sequence into the vector. Generally, DNA sequences are inserted into appropriate restriction endonuclease sites using methods known in the art.
表达载体中的 DNA 序列可以与适当的表达控制序列(启动子)连接,以指导 mRNA的 合成。 启动子的例子有: LTR 或 SV 40 启动子, 大肠杆菌的 lac或 trp, 噬菌体 λ PL 启动子, 以及已知其它的、 控制原核或真核细胞或其病毒中基因表达的启动子。 表达 载体也以包含指导翻译起始的核糖体结合位点和转录终止子。 载体还可以包含用于扩 增表达的合适序列。 The DNA sequence in the expression vector can be linked to an appropriate expression control sequence (promoter) to guide mRNA synthesis. Examples of promoters are: LTR or SV 40 promoter, lac or trp of E. coli, phage λ P L Promoters, as well as other promoters known to control gene expression in prokaryotic or eukaryotic cells or their viruses. The expression vector also contains a ribosome binding site and a transcription terminator that directs the initiation of translation. The vector may also contain suitable sequences for amplified expression.
此外, 优选的表达载体包含一个或多个选择标记基因, 以便为转化后宿主细胞的 筛选提供表型特征。 例如用于真核细胞培养物的二氢叶酸还原酶或新霉素抗性, 或者 如用于大肠杆菌的四环素和氨苄青霉素抗性。  In addition, preferred expression vectors contain one or more selectable marker genes to provide phenotypic characteristics for selection of transformed host cells. For example dihydrofolate reductase or neomycin resistance for eukaryotic cell cultures, or for example tetracycline and ampicillin resistance for E. coli.
含有上述合适的 DNA序列以及合适的启动子或者调控序列的载体可以用于转化适 当的宿主, 以使其表达蛋白质。  A vector containing the above-mentioned suitable DNA sequence and a suitable promoter or control sequence can be used to transform an appropriate host so that it can express a protein.
作为合适宿主的代表性例子有: 细菌细胞, 如大肠杆菌、 链霉菌、 鼠伤寒沙门氏 菌; 真菌细胞, 如酵母; 昆虫细胞如 DrosorpHila 和 Spodoptera Sf9; 动物细胞 如 CH0、 COS 或 Bowes黑素瘤; 腺病毒; 植物细胞等。 通过本文的教导, 选择合适的宿 主可视作在本领域技术人员的知识范围内。  Representative examples of suitable hosts are: bacterial cells such as E. coli, Streptomyces, Salmonella typhimurium; fungal cells such as yeast; insect cells such as DrosorpHila and Spodoptera Sf9; animal cells such as CH0, COS or Bowes melanoma; glands Viruses; plant cells, etc. With the teachings herein, selecting the appropriate host can be considered to be within the knowledge of those skilled in the art.
更具体地说, 本发明还包括含有以上广泛描述的一种或多种序列的重组构建体。 构建体包括正向或反向插入了本发明核酸序列的载体, 如质粒或病毒载体。 在更为理 想的实施方案中, 构建体还包含了可操作地与所述序列连接的调节序列, 如启动子。 许多合适的载体和启动子是本领域技术人员熟知的,并可以通过商业途径获得。例如, 细 菌载体: pQE70、 pQE60、 pQE-9 (Qiagen)、 pBS、 pD10、 pHagescript、 psiX174、 pbluescript SK、 pbsks、 pNH8A、 pNH16a、 pNH18A、 pNH46A (Stratagene)、 ptrc99a、 pKK223- 3、 pKK233-3、 PDR540^ pRITS (pHarmaca);真核载体: pWLNEO, pSV2CAT pOG44, pXT pSG (Stratagene)、 pSV 、 pBPV、 pMSG、 pSVL (Parmacia)„ 此外, 还可以使用其它的质粒或载体,只要它 们能够在宿主中复制并存活。 More specifically, the invention also includes recombinant constructs containing one or more sequences as broadly described above. The construct includes a vector, such as a plasmid or a viral vector, into which the nucleic acid sequence of the present invention has been inserted in the forward or reverse direction. In a more desirable embodiment, the construct further comprises a regulatory sequence, such as a promoter, operably linked to the sequence. Many suitable vectors and promoters are well known to those skilled in the art and are commercially available. For example, bacterial vectors: pQE70, pQE60, pQE-9 (Qiagen), pBS, pD10, pHagescript, psiX174, pbluescript SK, pbsks, pNH8A, pNH16a, pNH18A, pNH46A (Stratagene), ptrc99a, pKK223-3, pKK233-3, P DR540 ^ pRITS (pHarmaca); eukaryotic vectors: pWLNEO, pSV2CAT pOG44, pXT pSG (Stratagene), pSV, pBPV, pMSG, pSVL (Parmacia) „In addition, other plasmids or vectors can be used as long as they can be hosted in the host Copy and survive.
可以用带有 CAT (氯霉素转移酶) 或其它选择标记的载体从基因中选择启动子区。 两个合适的载体是 PKK232- 8和 PCM7。特别提到的细菌启动子包括 lacl、 lacZ、 T3、 Τ7、 gpt、 λΡκ、 Ρ 和 trp。 真核启动子包括 CMV立即早期, SV胸苷激酶, 早期和晚期 SV40、 来自逆转录病毒的 LTRs和小鼠金属硫蛋白- 1。 选择适当的载体与启动子可视作在本领 域技术人员的知识范围内。 Promoter regions can be selected from genes using vectors bearing CAT (chloramphenicol transferase) or other selectable markers. Two suitable vectors are PKK232-8 and PCM7. Particularly mentioned bacterial promoters include lacl, lacZ, T3, T7, gpt, λP κ , P and trp. Eukaryotic promoters include CMV immediate early, SV thymidine kinase, early and late SV40, LTRs from retroviruses, and mouse metallothionein-1. Selection of appropriate vectors and promoters can be considered as within the knowledge of those skilled in the art.
在另一个实施方案中, 本发明涉及包含上述构建体的宿主细胞。 宿主细胞可以是 高等真核细胞 (如哺乳动物细胞), 或低等真核细胞(如酵母细胞), 或者是原核细胞 (如 细菌细胞)。 通过磷酸钙转染、 DEAE-葡聚糖介导的转染或电穿孔法可以实现构建体向 宿主细胞的导入(Davis , L. , Dibner , M., Battey , I. , 分子生物学中的基本方法, (1986) )。  In another embodiment, the invention relates to a host cell comprising a construct as described above. Host cells can be higher eukaryotic cells (such as mammalian cells), lower eukaryotic cells (such as yeast cells), or prokaryotic cells (such as bacterial cells). The introduction of constructs into host cells can be achieved by calcium phosphate transfection, DEAE-dextran-mediated transfection, or electroporation (Davis, L., Dibner, M., Battey, I., Molecular Biology Basic Methods, (1986)).
宿主细胞中的构建体可以经由常规方式产生由重组序列编码的产物。 而且, 本发 明的多肽可以用常规的多肽合成仪合成。  The construct in the host cell can produce the product encoded by the recombinant sequence via conventional means. Moreover, the polypeptide of the present invention can be synthesized using a conventional peptide synthesizer.
在合适启动子的控制下, 成熟蛋白可以在哺乳动物细胞、 酵母细胞、 细菌细胞或 其它细胞中表达。 用来源于本发明 DNA 构建体的 RNA, 通过无细胞翻译系统也可以产 生目的蛋白。 Sambrook 等人在 《分子克隆实验室手册》 中 (1989, 第二版, 纽约冷泉 港实验室) 描述了可用于原核和真核宿主的、 合适的克隆及表达载体。 Under the control of a suitable promoter, the mature protein can be expressed in mammalian cells, yeast cells, bacterial cells, or other cells. The RNA derived from the DNA construct of the present invention can also be produced by a cell-free translation system. Health target protein. Sambrook et al., Molecular Cloning Laboratory Handbook (1989, Second Edition, Cold Spring Harbor Laboratory, New York) describe suitable cloning and expression vectors that can be used in prokaryotic and eukaryotic hosts.
通过向载体中插入增强子序列, 可以提高高等真核生物细胞对编码本发明多肽的 DNA的转录。 增强子是 DNA的顺式作用元件, 一般约 10至 300 bp, 它作用于启动子以 增强其转录。 增强子的例子有: 复制起点上游 100 至 270 bp 的 SV40增强子、 多形瘤 增强子以及腺病毒增强子。  By inserting the enhancer sequence into the vector, the transcription of the DNA encoding the polypeptide of the present invention by higher eukaryotic cells can be improved. Enhancers are cis-acting elements of DNA, typically about 10 to 300 bp. They act on promoters to enhance their transcription. Examples of enhancers are: SV40 enhancer 100 to 270 bp upstream of the origin of replication, polymorphoma enhancer, and adenovirus enhancer.
一般地, 重组表达载体包括复制起点和筛选标记基因(如大肠杆菌的氨苄青霉素 抗性基因和啤酒糖酵母的 TRP1 基因), 以及从高度表达的基因中得到、 能够指导下游 结构基因转录的启动子。 这样的启动子可以从编码糖酵解酶(例如 3-磷酸甘油酸激酶 (PGK) )、 α-因子、 酸性磷酸酶或热休克蛋白等的操纵子中得到。 异源序列以恰当的方 式与翻译起始序列及终止序列装配。 优选地, 与能够指导蛋白向细胞周质或细胞外培 养基分泌的前导序列装配。 异源序列可以编码含有 Ν-末端识别肽的融合蛋白, 该识别 肽具有理想的特征, 如稳定表达的重组产物或者简化纯化步骤。  Generally, a recombinant expression vector includes an origin of replication and a selection marker gene (such as the ampicillin resistance gene of E. coli and the TRP1 gene of Saccharomyces cerevisiae), and a promoter obtained from a highly expressed gene capable of directing transcription of downstream structural genes . Such promoters can be obtained from operons encoding glycolytic enzymes (such as 3-phosphoglycerate kinase (PGK)), α-factors, acid phosphatases, or heat shock proteins. Heterologous sequences are assembled with translation initiation and termination sequences in an appropriate manner. Preferably, it is assembled with a leader sequence capable of directing the secretion of the protein to the periplasm or extracellular medium. The heterologous sequence can encode a fusion protein containing an N-terminal recognition peptide, which has ideal characteristics, such as a stable expressed recombinant product or simplified purification steps.
将编码目的蛋白的结构基因, 合适的翻译起始和终止信号, 以及有功能的启动子 一起插入, 可以构建适用于细菌的表达载体。 所说载体包含一个或多个选择标记和一 个复制起点, 以维持载体并在必要时在宿主中扩增载体。 适合转化的原核宿主包括大 肠杆菌、 枯草芽孢杆菌、 鼠伤寒沙门氏菌、 假单胞菌属、 链霉菌属和葡萄球菌属的多 个种。  By inserting the structural gene encoding the protein of interest, appropriate translation initiation and termination signals, and a functional promoter together, an expression vector suitable for bacteria can be constructed. The vector contains one or more selectable markers and an origin of replication to maintain the vector and, if necessary, amplify the vector in the host. Suitable prokaryotic hosts for transformation include multiple species of E. coli, Bacillus subtilis, Salmonella typhimurium, Pseudomonas, Streptomyces and Staphylococcus.
作为代表性但非限制性的例子, 用于细菌的表达载体可以含有源自市售载体的选 择标记和复制起点, 这些市售载体包含公知的克隆载体 pBR322 (ATCC37017)的遗传元 件。 这样的市售载体包括, pKK223-3 (pHarmacia Fine化学品公司, Uppsala, 瑞典)和 GE 1 (Promega Biotec , Madison, WI , 美国)。 这些 pB 322 "骨架 "部分与适当的启动 子和待表达的结构序列相结合。  As a representative but non-limiting example, expression vectors for bacteria may contain selectable markers and origins of replication derived from commercially available vectors containing genetic elements of the well-known cloning vector pBR322 (ATCC37017). Such commercially available carriers include pKK223-3 (pHarmacia Fine Chemicals, Uppsala, Sweden) and GE 1 (Promega Biotec, Madison, WI, USA). These "backbone" portions of pB 322 are combined with appropriate promoters and structural sequences to be expressed.
转化合适的宿主菌株, 待其生长至合适的细胞密度后, 用恰当的方法 (例如温度 变换或化学诱导)诱导选择的启动子, 并继续培养细胞一段时间。 常用离心法收获细胞, 用物理或化学方法破碎细胞, 保留得到的粗产物以进一步纯化。 可以用任一种常规的 方法破碎微生物细胞, 所述方法包括冻融法、 超声处理、 机械破碎或使用细胞裂解剂, 这些方法是本领域技术人员熟知的。  After transforming a suitable host strain, after it has grown to a suitable cell density, induce the selected promoter by a suitable method (such as temperature conversion or chemical induction), and continue to culture the cells for a period of time. Cells are usually harvested by centrifugation, and the cells are disrupted by physical or chemical methods. The crude product obtained is retained for further purification. The microbial cells can be disrupted by any conventional method, including freeze-thaw methods, sonication, mechanical disruption, or the use of cell lysing agents, which methods are well known to those skilled in the art.
各种哺乳动物细胞培养系统也可用于表达重组蛋白质。 哺乳动物表达系统的例子 有由 Gluzman (细胞, 23 : 175 (1981) )描述的猴肾成纤维细胞 C0S-7细胞系和能够表达相 容载体的其它细胞系, 例如, C127, 3T3, CH0, HeLa和 BHK 细胞系。 哺乳动物表达载 体包含复制起点、 适合的启动子和增强子, 以及任何必需的核糖体结合位点、 聚腺苷 酸化位点、 剪接供体和受体位点、 转录终止序列和 5'侧翼非转录序列。 从 SV40病毒基 因组中得到的 DNA序列, 如 SV40复制起点、 早期启动子、 增强子、 剪接及多聚腺苷酸 化位点可用来提供所需要的非转录遗传元件。 可以用多种方法从重组细胞培养物中回收和纯化本发明的多肽, 所述方法包括硫 酸铵或乙醇沉淀、 酸提取、 阴离子或阳离子交换层析、 磷酸纤维素层析、 疏水作用层 析、 亲和层析、 羟基磷灰石层析、 植物凝集素层析和高效液相色谱层析 (HPLC)。 Various mammalian cell culture systems can also be used to express recombinant proteins. Examples of mammalian expression systems are the monkey kidney fibroblast COS-7 cell line described by Gluzman (Cell, 23: 175 (1981)) and other cell lines capable of expressing compatible vectors, for example, C127, 3T3, CH0, HeLa and BHK cell lines. Mammalian expression vectors contain origins of replication, suitable promoters and enhancers, and any necessary ribosome binding sites, polyadenylation sites, splice donor and acceptor sites, transcription termination sequences, and 5 'flanking non- Transcribed sequence. DNA sequences derived from the SV40 virus genome, such as the SV40 origin of replication, early promoters, enhancers, splicing and polyadenylation sites, can be used to provide the required non-transcribed genetic elements. The polypeptides of the present invention can be recovered and purified from recombinant cell cultures by a variety of methods including ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphate cellulose chromatography, hydrophobic interaction chromatography, Affinity chromatography, hydroxyapatite chromatography, lectin chromatography, and high performance liquid chromatography (HPLC).
本发明的多肽可以是天然纯化的, 或是化学合成的, 或是用重组技术从原核或真 核宿主 (例如细菌、 酵母、 高等植物、 培养的昆虫和哺乳动物细胞)制备的。 根据重组 方法中使用的宿主, 本发明的多肽可以是糖基化的或非糖基化的。 本发明的多肽也可 以包含一个起始的甲硫氨酸残基。  The polypeptides of the present invention may be naturally purified, or chemically synthesized, or prepared by recombinant techniques from prokaryotic or eukaryotic hosts (such as bacteria, yeast, higher plants, cultured insects, and mammalian cells). Depending on the host used in the recombinant method, the polypeptide of the invention may be glycosylated or non-glycosylated. The polypeptide of the invention may also contain a starting methionine residue.
本发明的多核苷酸和多肽可以用作人类疾病的治疗和诊断的研究试剂和材料。 Fwapl0576具有促进细胞增殖的作用, 可能被用于心脑血管疾病的治疗。  The polynucleotides and polypeptides of the present invention can be used as research reagents and materials for the treatment and diagnosis of human diseases. Fwapl0576 has the effect of promoting cell proliferation and may be used in the treatment of cardiovascular and cerebrovascular diseases.
根据本发明的另一方面, 提供了鉴定本发明多肽激活剂或拮抗剂的方法。 方法之 一是在某种化合物存在的情况下, 将表达 Fwapl0576 受体的哺乳动物细胞或膜制剂与 Fwapl0576多肽一起培养, 检测该化合物增强或阻断 Fwapl0576多肽与受体相互作用后 产生第二信使的能力。 第二信使系统包括但不限于: 蛋白酪氨酸激酶系统 (PTK), cAMP 鸟苷酸环化酶、 离子通道或磷酸肌醇水解作用。 鉴定多肽拮抗剂的另一种方法是竞争 抑制法。 该法将某化合物不存在时, 与受体结合的 Fwapl0576 多肽分子数设为对照, 通过检测该化合物存在时, 与受体结合的 Fwapl0576 多肽分子数的变化来确定潜在的 拮抗剂。  According to another aspect of the invention, there is provided a method for identifying an activator or antagonist of a polypeptide of the invention. One method is to culture mammalian cells or membrane preparations that express the Fwapl0576 receptor with Fwapl0576 polypeptide in the presence of a certain compound, and detect that the compound enhances or blocks the interaction of Fwapl0576 polypeptide with the receptor to generate a second messenger Ability. Second messenger systems include, but are not limited to: protein tyrosine kinase system (PTK), cAMP guanylate cyclase, ion channels, or phosphoinositide hydrolysis. Another method for identifying polypeptide antagonists is competition inhibition. This method sets the number of Fwapl0576 polypeptide molecules bound to the receptor as a control in the absence of a compound, and determines potential antagonists by detecting changes in the number of Fwapl0576 polypeptide molecules bound to the receptor in the presence of the compound.
潜在的拮抗剂包括抗体, 或者在某些情况下包括与本发明多肽结合的寡肽, 它们 与所述多肽结合并有效地消除其功能。 .  Potential antagonists include antibodies, or in some cases oligopeptides that bind to a polypeptide of the invention, which bind to the polypeptide and effectively eliminate its function. .
另一个潜在的拮抗剂化合物是用反义技术制备的反义构建体。 通过三股螺旋形成 反义 DNA或 RNA从而控制基因的表达, 上述方法均基于多核苷酸与 DNA或 RNA的结合。 例如, 可以依据编码本发明成熟多肽的核酸序列 5'端, 设计长约 10至 40个碱基对的 反义 RNA。 又如设计一种与转录涉及的基因区互补的 DNA (三螺旋-参见 Lee 等, 核酸 研究, 6 : 3073 (1979); Cooney 等, 科学, 241 : 456, (1988); 和 Dervan 等, 科学, 251 : 1360 (1991) ) , 从而阻止转录以及本发明多肽的产生。 反义 RNA在体内和 mRNA杂 交, 并阻断 mRNA 分子翻译成为本发明的多肽(反义 _0kano, J. 神经化学杂志, 56 : 560 (1991); 作为基因表达反义抑制剂的脱氧寡核苷酸(CRC 出版社, Boca Raton , FL (1988) ) o 可以将上述寡核苷酸传送至细胞, 从而在体内表达反义醒和 DNA以抑制 本发明多肽的产生。  Another potential antagonist compound is an antisense construct made using antisense technology. Antisense DNA or RNA is formed by triple helix to control gene expression. The above methods are all based on the combination of polynucleotide and DNA or RNA. For example, an antisense RNA of about 10 to 40 base pairs in length can be designed based on the 5 'end of a nucleic acid sequence encoding a mature polypeptide of the present invention. Another example is to design a DNA that is complementary to the gene region involved in transcription (triple helix-see Lee et al., Nucleic Acid Research, 6: 3073 (1979); Cooney et al., Science, 241: 456, (1988); and Dervan et al., Science 251: 1360 (1991)), thereby preventing transcription and the production of the polypeptide of the present invention. Antisense RNA hybridizes with mRNA in vivo and blocks translation of the mRNA molecule into the polypeptide of the present invention (Antisense_0kano, J. Neurochemical Journal, 56: 560 (1991); Deoxyoligonucleotides as antisense inhibitors of gene expression Glycolic acid (CRC Press, Boca Raton, FL (1988)) o The aforementioned oligonucleotides can be delivered to cells to express antisense and DNA in vivo to inhibit the production of the polypeptide of the invention.
拮抗剂还包括一些小分子, 这些小分子通过与本发明的多肽结合而阻止多肽与其 受体的相互作用, 从而阻断其正常的生物活性。 小分子包括但不限于小肽或类肽分子。  Antagonists also include small molecules that, by binding to the polypeptide of the invention, prevent the polypeptide from interacting with its receptor, thereby blocking its normal biological activity. Small molecules include, but are not limited to, small peptides or peptoid molecules.
本发明的多肽、 其激活剂和拮抗剂可以与合适的载体结合形成药物组合物。 这样 的组合物包含治疗有效量的多肽和药学上可接受的载体或赋形剂。 载体包括但不限于 盐水、 缓冲液、 葡萄糖、 水、 甘油、 乙醇以及上述物质的组合。 其配方应与给药的方 式相宜。 本发明还提供了一种药物包装或试剂盒, 其内装有一个或多个容器, 容器内装有 本发明药物组合物的一种或多种组分。 与之同时提供的可以是经政府药物管理机构审 核的、 有关药品或生物制品制造、 使用及销售的信息。 本发明的药物组合物还可以与 其它的治疗化合物结合使用。 The polypeptides of the present invention, their activators and antagonists can be combined with a suitable carrier to form a pharmaceutical composition. Such a composition comprises a therapeutically effective amount of a polypeptide and a pharmaceutically acceptable carrier or excipient. Carriers include, but are not limited to, saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof. The formulation should be appropriate to the mode of administration. The present invention also provides a pharmaceutical package or kit containing one or more containers therein, the container containing one or more components of the pharmaceutical composition of the present invention. At the same time, it can provide information about the manufacture, use, and sale of drugs or biological products that has been reviewed by government drug regulatory agencies. The pharmaceutical composition of the present invention can also be used in combination with other therapeutic compounds.
药物组合物可以按常规方式给药, 如口服、 局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻内或真皮内途径。 以治疗和 /或预防特定疾病有效的剂量施用药物组合物。 通常以至 少大约 10微克 /千克体重的量给药。 在大多数情况下, 以不超过每天约 8毫克 /千克体 重的量给药。 在大多数情况之下, 考虑到用药途径和症状等因素, 给药剂量从每日大 约 10微克 /千克到 1毫克 /千克体重。  The pharmaceutical composition can be administered in a conventional manner, such as by oral, topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route. The pharmaceutical composition is administered in a dose effective to treat and / or prevent a particular disease. It is usually administered in an amount of at least about 10 micrograms per kilogram of body weight. In most cases, it is administered in an amount not exceeding about 8 mg / kg body weight per day. In most cases, taking into account the route of administration and symptoms, the dosage is from about 10 μg / kg to 1 mg / kg body weight per day.
根据本发明的另一方面, 可以通过在体内表达的方式使用本发明的多肽及其激活 剂和拮抗剂, 这种方式常被称作"基因治疗"。  According to another aspect of the present invention, the polypeptide of the present invention and its activators and antagonists can be used by expression in vivo, which is often referred to as "gene therapy".
因此, 可以在体外用编码本发明多肽的核酸 (DNA 或者 RNA)对患者细胞进行基因 工程化处理, 再将工程化的细胞提供给需要治疗的患者。 上述方法是本领域熟知的。 例如, 可以用含有编码本发明多肽的 RNA的逆转录病毒对细胞进行基因工程化处理。  Therefore, a patient's cells can be genetically engineered with a nucleic acid (DNA or RNA) encoding a polypeptide of the present invention in vitro, and the engineered cells can be provided to a patient in need of treatment. The methods described above are well known in the art. For example, cells can be genetically engineered with a retrovirus containing RNA encoding a polypeptide of the invention.
类似的, 可以通过本领域已知的方法在体内基因工程化细胞, 以便在体内表达多 肽。 例如, 用含有编码本发明多肽的 RNA 的逆转录病毒转导包装细胞, 以使其能够产 生含有目的基因的感染性病毒颗粒。 将这种生产细胞用于患者,从而在体内工程化细胞 并表达所说的多肽。 根据本发明的教导, 通过上述方法或其它方式施用本发明的多肽 对本领域技术人员而言是显而易见的。  Similarly, cells can be genetically engineered in vivo by methods known in the art to express a polypeptide in vivo. For example, a packaging cell is transduced with a retrovirus containing RNA encoding a polypeptide of the present invention so that it can produce an infectious virus particle containing the gene of interest. This production cell is used in a patient to engineer the cell in vivo and express the polypeptide. It will be apparent to those skilled in the art that the polypeptides of the present invention are administered by the methods described above or otherwise in accordance with the teachings of the present invention.
可以得到逆转录病毒质粒载体的逆转录病毒包括但不限于: 莫洛尼氏 (Moloney) 鼠白血病病毒、 脾坏死病毒、 反转录病毒如劳氏(Rous)肉瘤病毒、 Harvey 肉瘤病毒、 禽白血病病毒、 长臂猿白血病病毒、 人类免疫缺陷病毒、 腺病毒、 骨髓增生肉瘤病毒 和乳房肿瘤病毒。  Retroviruses from which retroviral plasmid vectors can be obtained include, but are not limited to: Moloney murine leukemia virus, spleen necrosis virus, retroviruses such as Rous sarcoma virus, Harvey sarcoma virus, avian leukemia Viruses, gibbon leukemia virus, human immunodeficiency virus, adenovirus, myeloproliferative sarcoma virus, and breast tumor virus.
所述载体包含一个或多个启动子。 可使用的合适启动子包括但不限于: 反转录病 毒 LTR ; SV 40启动子; 人巨细胞病毒(CMV)启动子(Mi ller等, 生物技术, Vol. 7, No. 9, 980- 990 (1989)描述); 或其它启动子(例如真核细胞启动子, 包括但不限于组蛋白、 pol III 和 β-肌动蛋白启动子)。 其它可采用的病毒启动子包括但不限于:腺病毒启动 子、 胸苷激酶 (ΤΚ)启动子和 B19 细小病毒启动子。 通过本文的教导, 选择载体上合适 的启动子对本领域技术人员而言是显而易见的。  The vector contains one or more promoters. Suitable promoters that can be used include, but are not limited to: retrovirus LTR; SV 40 promoter; human cytomegalovirus (CMV) promoter (Miller et al., Biotechnology, Vol. 7, No. 9, 980- 990 (1989)); or other promoters (such as eukaryotic cell promoters, including but not limited to the histone, pol III, and β-actin promoters). Other viral promoters that can be used include, but are not limited to, an adenovirus promoter, a thymidine kinase (TK) promoter, and a B19 parvovirus promoter. With the teachings herein, selecting a suitable promoter on the vector will be apparent to those skilled in the art.
编码本发明多肽的核酸序列应当有合适的启动子控制。 可以使用的合适的启动子 包括但不限于: 腺病毒启动子(如腺病毒主要晚期启动子); 或者异源启动子(如巨细胞 病毒 (CMV)启动子); 呼吸合胞体病毒(RSV)启动子; 可诱导的启动子(如 ΜΜΤ 启动子、 金属硫蛋白启动子); 热休克启动子; 清蛋白启动子; ΑροΑΙ 启动子; 人类珠蛋白启动 子; 病毒胸苷激酶启动子 (如单纯疱疹胸苷激酶启动子); 反转录病毒 LTRs (包括上文描 述的修饰的反转录病毒 LTRs) ; β-肌动蛋白启动子和人类生长激素启动子。 启动子也 可以是编码所述多肽的基因的天然启动子。 The nucleic acid sequence encoding a polypeptide of the invention should be controlled by a suitable promoter. Suitable promoters that can be used include, but are not limited to: an adenovirus promoter (such as an adenovirus major late promoter); or a heterologous promoter (such as a cytomegalovirus (CMV) promoter); a respiratory syncytial virus (RSV) Promoter; Inducible promoter (such as MMT promoter, metallothionein promoter); heat shock promoter; albumin promoter; ΑροΑΙ promoter; human globin promoter; viral thymidine kinase promoter (such as pure Herpes thymidine kinase promoter); retrovirus LTRs (including modified retrovirus LTRs described above); β-actin promoter and human growth hormone promoter. Promoter It may be a natural promoter of a gene encoding the polypeptide.
可以用反转录病毒质粒载体转导包装细胞以产生生产细胞。 可被转染的包装细胞 包括但不限于: PE50 ΡΑ317、 ψ_2、 ψ- ΑΜ、 ΡΑ12、 T19- 14Χ、 VT- 19- 17- Η2、 CRE, v|/CRIP、 GP+E- 86、 GP+envAml2和 DNA细胞系(Miller, 人类基因治疗, Vol. 1, pgs. 5-14 (1990) 描述的, 其全部内容本文一并参考)。 载体可以用任何本领域己知的方法转导包装细胞。 这些方法包括但不限于: 电穿孔、 使用脂质体和 CaP( 沉淀。 另外, 逆转录病毒质粒载 体可以包埋在脂质体中, 或者偶联到脂类上, 然后引入宿主中。  Packaging cells can be transduced with a retroviral plasmid vector to produce producing cells. Packaging cells that can be transfected include, but are not limited to: PE50 PAC317, ψ_2, ψ- ΑΜ, ΡΑ12, T19-14X, VT-19-19-17- Η2, CRE, v | / CRIP, GP + E- 86, GP + envAml2 and the DNA cell line (described by Miller, Human Gene Therapy, Vol. 1, pgs. 5-14 (1990), which is incorporated herein by reference in its entirety). The vector can be used to transduce packaging cells by any method known in the art. These methods include, but are not limited to, electroporation, the use of liposomes, and precipitation with CaP (. In addition, retroviral plasmid vectors can be embedded in liposomes, or coupled to lipids, and then introduced into a host.
生产细胞系产生感染性逆转录病毒载体颗粒, 该颗粒包含能够编码所述多肽的核 酸序列。 可以用这些逆转录病毒载体在体内或体外转导真核细胞。 被转导的真核细胞 将表达编码所述多肽的核酸序列。 可以被转导的真核细胞包括但不限于: 胚胎茎干细 胞、 胚胎癌细胞、 以及造血茎千细胞、 肝细胞、 成纤维细胞、 成肌细胞、 角质化细胞、 内皮细胞和支气管上皮细胞。  The production cell line produces an infectious retroviral vector particle comprising a nucleic acid sequence capable of encoding the polypeptide. These retroviral vectors can be used to transduce eukaryotic cells in vivo or in vitro. The transduced eukaryotic cell will express a nucleic acid sequence encoding the polypeptide. Eukaryotic cells that can be transduced include, but are not limited to, embryonic stem cells, embryonic cancer cells, and hematopoietic stem cells, liver cells, fibroblasts, myoblasts, keratinocytes, endothelial cells, and bronchial epithelial cells.
根据本发明的另一方面, 本发明涉及 Fwapl0576基因在诊断或检测中的用途, 通 过检测 Fwapl0576核酸序列中的突变可以诊断出相关疾病或对疾病的易感性。  According to another aspect of the present invention, the present invention relates to the use of the Fwapl0576 gene in diagnosis or detection. By detecting mutations in the Fwapl0576 nucleic acid sequence, a related disease or susceptibility to the disease can be diagnosed.
可以用多种技术在 DNA水平上检测出携带 Fwapl0576基因突变的个体。 可以从患 者的细胞, 如来自血液, 尿, 唾液, 活组织检查和尸体解剖材料的细胞。 基因组 DNA 可以直接用于检测, 或者在分析前可以用 PCR 扩增(Saiki 等, 自然, 324 : 163 - 166 (1986) )。 RNA或 cDNA也可用于相同目的。 例如, 与本发明多核苷酸互补的 PCR引 物可于鉴别和分析突变。 如通过与正常的基因型相比较, 根据扩增产物的大小改变来 检测缺失及插入。 可以经与可以用放射性标记的 RNA或反义 DNA与扩增后的核酸序列 杂交, 以鉴别点突变。 用 RNaseA消化或通过解链温度的差异, 可以辨别完全配对序列 和错配的双链。  Individuals carrying mutations in the Fwapl0576 gene can be detected at the DNA level using a variety of techniques. Can be obtained from patient's cells, such as cells from blood, urine, saliva, biopsies and autopsies. Genomic DNA can be used directly for detection, or it can be amplified by PCR before analysis (Saiki et al., Nature, 324: 163-166 (1986)). RNA or cDNA can also be used for the same purpose. For example, PCR primers complementary to the polynucleotides of the present invention can be used to identify and analyze mutations. Detect deletions and insertions based on changes in the size of the amplified product, as compared to normal genotypes. Point mutations can be identified by hybridizing to amplified nucleic acid sequences with radioactively labeled RNA or antisense DNA. Digestion with RNaseA or by differences in melting temperature can discriminate between perfectly matched sequences and mismatched double strands.
通过 DNA测序可以直接揭示对照基因和携带突变基因之间的序列差异。 此外, 克 隆的 DNA片段可以作为探针检测特异的 DNA区段。 当与 PCR结合使用时, 这种方法的 灵敏性大大提高, 例如, 将测序引物和双链 PCR产物、 或者由改良的 PCR法产生的单 链模板分子一起使用。 常规的自动测序法用放射性标记或荧光标记来确定核酸序列。  DNA sequencing can directly reveal the sequence difference between the control gene and the gene carrying the mutation. In addition, cloned DNA fragments can be used as probes to detect specific DNA segments. When used in combination with PCR, the sensitivity of this method is greatly improved, for example, using sequencing primers and double-stranded PCR products, or single-stranded template molecules produced by a modified PCR method. Conventional automated sequencing methods use radioactive or fluorescent labels to determine nucleic acid sequences.
基于 DNA 序列差异的遗传试验可以通过检测在含有或不含变性剂的凝胶中, DNA 片段电泳迁移率的变化来实现。 小的序列缺失和插入可以由高分辨率凝胶电泳显示。 不同序列的 DNA 片段可以在变性甲酰胺梯度凝胶上进行区分, 根据其特定的熔点或部 分解链温度, 不同的 DNA 片段将停滞在凝胶的不同位置(参见 Myers 等, 科学, 230 : 1242 (1985) ) o  Genetic tests based on DNA sequence differences can be achieved by detecting changes in the electrophoretic mobility of DNA fragments in gels with or without denaturants. Small sequence deletions and insertions can be displayed by high-resolution gel electrophoresis. DNA fragments of different sequences can be distinguished on denaturing formamide gradient gels. Depending on their specific melting point or partial melting temperature, different DNA fragments will stagnate at different positions on the gel (see Myers et al., Science, 230: 1242 (1985)) o
用 RNase 和 S1 保护的核酸酶保护分析法或化学裂解法也可以检测特殊位置上的 序列变化, (如 Cotton等, PNAS, 美国, 85 : 4397-4401 (1985) )。  RNase and S1 protected nuclease protection assays or chemical cleavage methods can also detect sequence changes at specific locations (eg Cotton et al., PNAS, USA, 85: 4397-4401 (1985)).
因此, 可以用杂交、 核糖核酸酶保护、 化学裂解、 直接 DNA测序、 或使用限制酶 (如限制性片段长度多态性(RFLP) )和基因组 DNA的 Southern印迹法来检测 DNA序列的 差异。 Therefore, hybridization, ribonuclease protection, chemical cleavage, direct DNA sequencing, or Southern blotting using restriction enzymes (such as restriction fragment length polymorphism (RFLP)) and genomic DNA can be used to detect DNA sequences. Difference.
除了更常规的凝胶电泳和 DNA测序之外, 突变也可以用原位分析法检测。  In addition to more conventional gel electrophoresis and DNA sequencing, mutations can also be detected by in situ analysis.
根据本发明的另一方面, 本发明涉及一种通过检测不同组织中 Fwapl0576 肽含 量的改变而进行的诊断分析方法。 这是基于与正常对照组织相比, 某组织中该多肽的 过量表达可以检测疾病或疾病易感性的存在。 检测取自宿主的样品中本发明多肽之含 量的分析方法是本领域技术人员熟知的, 方法包括放射免疫测定、 竞争结合测定、 Western 印迹分析、 酶联免疫吸附 (ELISA) 测定和 "夹心"测定, 优选 ELISA 检测。 ELISA 测定包括首先制备本发明多肽的特异性抗体, 优选单克隆抗体。 然后制备该单 克隆抗体的报导抗体。 将报导抗体与一种可检测试剂相结合, 所说试剂如放射性试剂、 荧光试剂或者辣根过氧化物酶。 从宿主取样, 并将其在与样品中蛋白质结合的固体支 持物 (如聚苯乙烯皿)中温育。 通过和非特异性蛋白质(如牛血清清蛋白)一起温育, 将 覆盖皿中任何自由的蛋白质结合位点。 接下来, 在单克隆抗体和结合到聚苯乙烯皿上 的本发明任何多肽结合期间, 将单克隆抗体在皿中温育。 用缓冲液将所有未结合的单 克隆抗体洗掉。 此时, 将和辣根过氧化物酶连接的受体抗体放入皿中, 结果导致受体 抗体和任何结合到本发明多肽上的单克隆抗体结合。 然后将未结合的单克隆抗体洗掉。 接着向皿中加入过氧化物酶底物, 和标准曲线比较, 在给定时间内产生的颜色的量即 是给定体积的患者样品中存在的蛋白质的量。  According to another aspect of the present invention, the present invention relates to a diagnostic analysis method by detecting changes in the content of Fwapl0576 peptide in different tissues. This is based on the fact that over-expression of the polypeptide in a tissue compared to normal control tissue can detect the presence of disease or disease susceptibility. Analytical methods for detecting the content of the polypeptide of the present invention in a sample taken from a host are well known to those skilled in the art. Methods include radioimmunoassay, competitive binding assay, Western blot analysis, enzyme-linked immunosorbent assay (ELISA) assay and "sandwich" assay. , ELISA detection is preferred. The ELISA assay involves first preparing a specific antibody, preferably a monoclonal antibody, of a polypeptide of the invention. A reporter antibody to the monoclonal antibody is then prepared. The reporter antibody is combined with a detectable reagent such as a radioactive, fluorescent or horseradish peroxidase. A sample is taken from the host and incubated in a solid support (such as a polystyrene dish) that binds to the protein in the sample. By incubating with non-specific proteins (such as bovine serum albumin), any free protein binding site in the dish will be covered. Next, the monoclonal antibody is incubated in the dish during the binding of the monoclonal antibody to any of the polypeptides of the invention bound to a polystyrene dish. Wash all unbound monoclonal antibodies with buffer. At this time, the receptor antibody linked to horseradish peroxidase is placed in a dish, and as a result, the receptor antibody is bound to any monoclonal antibody bound to the polypeptide of the present invention. Unbound monoclonal antibodies were then washed away. Then add the peroxidase substrate to the dish, and compared with the standard curve, the amount of color produced in a given time is the amount of protein present in a given volume of patient sample.
也可以用竞争测定法检测多肽含量。 方法包括将 Fwapl0576 多肽的特异性抗体结 合到固相支持物上, 然后标记 (如放射性标记) 本发明的多肽, 将取自宿主的样品通 过固相支持物, 然后通过检测标记量, 确定样品竞争性结合抗体的量, 从而确定样品 中本发明多肽的含量。  Polypeptide content can also be measured using competitive assays. The method includes binding a specific antibody of the Fwapl0576 polypeptide to a solid phase support, and then labeling (such as radioactive labeling) the polypeptide of the present invention, passing a sample taken from the host through the solid phase support, and then detecting the amount of the label to determine sample competition. The amount of sexually bound antibody, thereby determining the content of the polypeptide of the present invention in the sample.
本发明的多核苷酸序列对染色体的鉴别也极有价值。 该序列特异性地靶向于人染 色体的特定位置, 并与之杂交。 目前, 仅有少数几种基于实际序列数据 (重复多形性) 的染色体标识试剂可用于标记染色的体位置。 基于本发明 DNA 的染色体作图是将这些 序列和疾病相关基因关联的首要的步骤。  The polynucleotide sequence of the present invention is also extremely valuable for the identification of chromosomes. This sequence specifically targets and hybridizes to specific positions of the human chromosome. Currently, only a few chromosome identification reagents based on actual sequence data (repeating polymorphisms) can be used to mark stained body positions. Mapping chromosomes based on the DNA of the present invention is the first step in correlating these sequences with disease-related genes.
简言之, 通过由 cDNA制备 PCR引物 (优选 15-25bp) 可以进行序列的染色体定位。 通过计算机分析基因的 3'非翻译区, 可以快速选择引物。 引物不应跨越基因组 DNA 的 第一个外显子, 否则将使扩增复杂化。 然后, 将引物用于 PCR 以筛选含有单个的人染 色体的体细胞杂和体。 只有含有与该引物相应的基因的杂和体才会产生扩增片段。  In short, chromosomal localization of the sequence can be performed by preparing PCR primers (preferably 15-25 bp) from cDNA. Computer analysis of the 3 'untranslated region of the gene allows rapid selection of primers. Primers should not span the first exon of genomic DNA, or they will complicate amplification. Primers were then used in PCR to screen for somatic hybrids containing a single human chromosome. Only the hybrids containing the gene corresponding to the primer will produce amplified fragments.
体细胞杂合体的 PCR作图是将特定 DNA定位于特定染色体的快捷方法。 根据本发 明, 用相同的寡核苷酸引物和来自特定染色体或大基因组克隆的一组片段, 依照类似 方法可以完成亚定位。 可以用于染色体作图的其它作图方法包括原位杂交、 用标记的、 经流式分选的染色体进行预筛选以及用杂交进行预筛选,从而构建染色体特异性的 cDNA 文库。  PCR mapping of somatic hybrids is a quick way to locate specific DNA on specific chromosomes. According to the present invention, sublocalization can be accomplished in a similar manner using the same oligonucleotide primers and a set of fragments from a specific chromosome or large genome clone. Other mapping methods that can be used for chromosome mapping include in situ hybridization, pre-screening with labeled, flow-sorted chromosomes, and pre-screening with hybridization to construct a chromosome-specific cDNA library.
cDNA 克隆与中期染色体涂片的荧光原位杂交 (FISH)可以实现更精确的染色体位 置。 该技术可以采用 50或 60个碱基长短的 cDNA。 详见 Verma 等人的综述, 人类染色 体:基本技术手册, Pergamon 出版社, 纽约(1988)。 Fluorescent in situ hybridization (FISH) of cDNA clones and metaphase chromosome smears for more precise chromosomal positions Home. This technique can use cDNAs that are 50 or 60 bases long. See a review by Verma et al., Human Chromosomes: A Handbook of Basic Techniques, Pergamon Press, New York (1988).
一旦完成了基因在染色体上的精确定位, 则可以将该基因在染色体上的物理位置 与遗传图谱数据联系起来。 这些数据可以在例如 V. Mc usick, 人类孟德尔式遗传中找 到 (可通过互联网在 Johns Hopkins 大学的 Welch 医学文库中得到)。 然后通过连锁 分析 (物理相邻基因的共遗传), 确定基因与已定位到染色体相同区域的疾病之间的关 系。  Once the precise location of the gene on the chromosome is completed, the physical location of the gene on the chromosome can be linked to genetic map data. These data can be found in, for example, V. Mcusick, Human Mendelian Genetics (available on the Internet at the Welch Medical Library at Johns Hopkins University). Linkage analysis (co-heritance of physically adjacent genes) is then used to determine the relationship between genes and diseases that have been mapped to the same region of the chromosome.
随后需要确定患病个体和正常个体之间 cDNA或者基因组序列的差异。 如果在部 分或全部患病个体中观察到突变, 但在正常个体中观察不到, 则所述突变可能是疾病 的病因。  Differences in the cDNA or genomic sequence between the affected individual and the normal individual then need to be determined. If mutations are observed in some or all of the affected individuals but not in normal individuals, the mutations may be the cause of the disease.
所说的多肽、 其片段、 其衍生物或类似物, 或表达上述物质的细胞可用作免疫原 而产生抗体。 抗体可以是多克隆或单克隆抗体。 本发明也包括嵌合的、 单链和人源化 的抗体, 以及 Fab 片段或 Fab表达文库的产物。 本领域已知的多种方法均可用于产生 这些抗体和片段。  Said polypeptide, a fragment thereof, a derivative thereof or the like, or a cell expressing the above substance can be used as an immunogen to produce an antibody. The antibody can be a polyclonal or monoclonal antibody. The invention also includes chimeric, single-chain and humanized antibodies, as well as products of Fab fragments or Fab expression libraries. Various methods known in the art can be used to produce these antibodies and fragments.
通过向动物体(优选非人体)直接注射或者施用本发明的多肽可以获得相应的抗 体。 这样获得的抗体会与所述多肽结合。 这样, 即使是编码多肽片段的序列也可以产 生能够结合整个天然多肽的抗体。 进而用这种抗体从表达该多肽的组织中分离多肽。  Corresponding antibodies can be obtained by directly injecting or administering the polypeptide of the present invention to an animal body, preferably a non-human body. The antibody thus obtained will bind to the polypeptide. In this way, even sequences that encode polypeptide fragments can produce antibodies capable of binding the entire natural polypeptide. This antibody is then used to isolate the polypeptide from the tissue in which the polypeptide is expressed.
为了制备单克隆抗体, 可以采用任何一种通过连续的细胞系培养而生产抗体的技 术。 例如杂交瘤技术(Kohler和 Milstein, 1975, 自然, 256 : 495-497)、 三体杂交瘤 技术、 人 B-细胞杂交瘤技术(Kozbor等, 1983, 今日免疫学, 4: 72)和£8¥-杂交瘤技术 (Cole, 等, 1985, 单克隆抗体和癌癌症治疗, Alan R. Liss, Inc. , pp. 77-96)。  For the production of monoclonal antibodies, any technique for producing antibodies by continuous cell line culture can be used. Examples include hybridoma technology (Kohler and Milstein, 1975, Nature, 256: 495-497), trisomy hybridoma technology, human B-cell hybridoma technology (Kozbor et al., 1983, Immunology Today, 4: 72) and £ 8 ¥ -Hybridoma Technology (Cole, et al., 1985, Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96).
可以将所述生产单链抗体的技术 (美国专利 4, 946, 778)加以改进, 以生产抗本 发明多肽 (具免疫原性) 的单链抗体。 也可以用转基因小鼠表达抗本发明多肽 (具免 疫原性) 的人源化抗体。  The technology for producing single-chain antibodies (U.S. Patent No. 4,946,778) can be improved to produce single-chain antibodies against the polypeptide (immunogenic) of the present invention. Transgenic mice can also be used to express humanized antibodies against the polypeptides (immunogenic) of the invention.
为了更清楚地理解本发明的实质, 现参照下列附图和实施例对其进行解释。 附图 和实施例是为了说明而不以任何方式限制本发明。  For a clearer understanding of the essence of the present invention, it will now be explained with reference to the following drawings and embodiments. The drawings and examples are for illustration purposes and do not limit the invention in any way.
在以上所述的教导下, 本发明的许多改良和变化是可能的, 因此, 在附属权利要 求的范围内, 可以以不同于以上特定描述的方式实施本发明。 附图简述  Many improvements and variations of the present invention are possible under the teachings described above, and thus, within the scope of the appended claims, the present invention may be implemented in a manner different from the one specifically described above. Brief description of the drawings
图 1显示了 Fwapl0576在正常组织的分布。  Figure 1 shows the distribution of Fwapl0576 in normal tissues.
图 2显示了 Fwapl0576在不同肿瘤细胞系中的分布。  Figure 2 shows the distribution of Fwapl0576 in different tumor cell lines.
图 3显示了 Fwapl0576在正常成人和胎儿心肌组织, 以及在陈旧性心肌梗塞病人 室壁瘤组织表达的情况。  Figure 3 shows the expression of Fwapl0576 in normal adult and fetal myocardial tissues, and in ventricular aneurysm tissue in patients with old myocardial infarction.
图 4为原位杂交观察 Fwapl0576在正常动物模型脑组织的表达。 图 5 为重组蛋白 TRXSX576表达条件的优化。 其中, Figure 4 shows the expression of Fwapl0576 in brain tissue of normal animal models by in situ hybridization. Figure 5 shows the optimization of the expression conditions of the recombinant protein TRXSX576. among them,
A 显示不同活化时间对重组蛋白 TRXSX576表达量的影响; B 显示不同诱导时间对 重组蛋白 TRXSX576表达量的影响。  A shows the effect of different activation time on the expression of recombinant protein TRXSX576; B shows the effect of different induction time on the expression of recombinant protein TRXSX576.
图 6为原位杂交法检测 Fwapl0576在正常动物脑组织中表达的情况。  Figure 6 shows the expression of Fwapl0576 in normal animal brain tissue by in situ hybridization.
图 7为原位杂交法检测 Fwapl0576在脑卒中动物脑组织中表达的情况。  Figure 7 shows the expression of Fwapl0576 in brain tissue of stroke animals by in situ hybridization.
图 8 为免疫组化分析结果 (光镜 χ100)。 A. 非脑卒中病人的脑组织切片, I 抗为 Fwapl0576-SE3McAb; B. 脑卒中病人的脑组织切片, I抗为 Fwapl0576- SE3McAb; C.非 脑卒中病人的脑组织切片, I抗为 Fwapl0576- SE3McAb ; D. 脑卒中病人的脑组织切片, I 抗为 Fwap 10576- SE3McAb; E. 脑卒中病人的脑组织切片, I 抗为 Fwapl0576- 6H10 cAb; F. 脑卒中病人的脑组织切片, I抗为 Fwapl0576_ 6Bl lMcAb。 Figure 8 shows the results of immunohistochemical analysis (light microscope x 100). A. Brain tissue sections of non-stroke patients, I antibody is Fwapl0576-SE3McAb ; B. Brain tissue sections of stroke patients, I antibody is Fwapl0576-SE3McAb; C. Brain tissue sections of non-stroke patients, I antibody is F wa pl0576-SE3McAb; D. brain tissue section of stroke patients, I antibody is Fwap 10576-SE3McAb; E. brain tissue section of stroke patients, I antibody is Fwapl0576- 6H10 cAb ; F. brain tissue section of stroke patients The I antibody is Fwapl0576_ 6Bl lMcAb.
图 9为高表达 Fwapl0576诱发细胞增殖的情况。 实施例  Figure 9 shows the cell proliferation induced by high expression of Fwapl0576. Examples
实施例一、 成人主动脉 cDNA文库的构建 Example 1 Construction of Adult Aortic cDNA Library
1.1 RNA的提取 1.1 RNA extraction
RNA gents® Total RNA Isolation System kit购自美国 Promega公司 ( Cat Νο·Ζ5110)。 操作如下: 称取 0.3g液氮中保存的成人主动脉组织, 加入 10ml变性液 (4M异硫氰酸 胍、 25mM柠檬酸三钠) 和 lml 2M乙酸钠 (pH4.0) 匀桨。 加入等体积水饱和酚和 0.2 倍体积氯仿, 剧烈振荡 15秒, 冰上放置 15分钟。 10, OOOrpm, 4°C离心 20分钟。 取 上清, 加等体积异丙醇, -20Ό放置 2小时, 离心。 再用变性液 5ml悬浮沉淀, 重复上 述步骤。 用 lml冰预冷的 75%乙醇洗涤沉淀,室温下蒸发痕量乙醇 5-10分钟, 用焦碳酸 二乙脂 (diethyl pyrocarbonate, 以下简称 DEPC) 处理的去离子水溶解 RNA。  RNA gents® Total RNA Isolation System kit was purchased from Promega Corporation (Cat NO. Z5110). The operation is as follows: Weigh adult aortic tissue stored in 0.3g of liquid nitrogen, add 10ml of denaturing solution (4M guanidine isothiocyanate, 25mM trisodium citrate) and 1ml 2M sodium acetate (pH4.0) and uniformly paddle. Add equal volume of water-saturated phenol and 0.2 times volume of chloroform, shake vigorously for 15 seconds, and leave on ice for 15 minutes. Centrifuge at 10,000 rpm, 4 ° C for 20 minutes. Take the supernatant, add an equal volume of isopropanol, and leave it at -20Ό for 2 hours, then centrifuge. Suspend the pellet with 5ml of denaturing solution and repeat the above steps. Wash the precipitate with 1 ml of ice-cold 75% ethanol, evaporate the trace ethanol for 5-10 minutes at room temperature, and dissolve the RNA with diethyl pyrocarbonate (DEPC) treated with deionized water.
1.2 mRNA的分离 1.2 Isolation of mRNA
成熟的 m A的 3'端有一条由 20-250个腺苷酸组成的 Poly(A)。 根据该特征, 可 用亲和层析法分离 mRNA和其它的 RNA。 本实验使用的 oligo(dT)纤维素含有 12-18个 核苷酸 (T) 的多聚链。 在多盐条件下, 带有 oligo(A)尾巴的 mRNA与 oHgo(dT)结合并 留在柱子上, 而无 oligo(A)尾巴的 rRNA与 tRNA被洗掉, 然后用低盐液洗脱挂在柱子 上的 mRNA。  At the 3 'end of the mature m A, there is a Poly (A) consisting of 20-250 adenylates. Based on this feature, mRNA and other RNAs can be separated by affinity chromatography. The oligo (dT) cellulose used in this experiment contains 12-18 nucleotides (T) of polymer chains. Under multi-salt conditions, the mRNA with oligo (A) tail binds to oHgo (dT) and remains on the column, while the rRNA and tRNA without oligo (A) tail are washed off, and then suspended with low salt solution. MRNA on the column.
Quick prep ® micro mRNA purification kit购自瑞典 pHarmacia公司。在 1.5ml无 RNA 酶的离心管 1#内加入 lml oligo(dT)纤维素悬液; 另取 1.5ml离心管 2#, 加入用上样缓冲 液稀释的总 RNA lml; 管 2#和管 2#室温离心 1分钟, 12000rpm; 吸去管 1#上清, 将管 2#的上清加入管 1#,轻摇 5-10分钟;室温离心 10秒, 12000rpm;用 lml高盐缓冲液( lOmM Tris-HCl pH7.5 , ImM EDTA, 0.5MNaCl)洗涤 5次, 离心; 用 lml低盐缓冲液( lOmM Tris-HCl pH7.5 , ImM EDTA, 0.1M NaCl) 洗涤 5次, 离心; 用 0.3ml低盐缓冲液悬浮 oligo(dT)沉淀并转移到微量离心柱, 12, 000rpm, 离心 5秒; 用 0.5ml低盐缓冲液洗涤 3次,离心;用 2X0.2ml洗脱液收集 mRNA;用分光光度计测定光密度,计算 OD260/280 的比值; 得到 300yl mRNA, 加入 7.5 μΐ糖原, 30μ 12.5Μ乙酸钾 (ρΗ5.0), 750μ1无 水乙醇在 -70。C保存备用; 使用前离心 5分钟, 75%乙醇洗涤, DEPC水溶解 mR A。 Quick prep ® micro mRNA purification kit was purchased from pHarmacia, Sweden. Add 1ml oligo (dT) cellulose suspension to 1.5ml RNase-free centrifuge tube 1 # ; take another 1.5ml centrifuge tube 2 # and add 1ml of total RNA diluted with loading buffer; tube 2 # and tube 2 # centrifugation for 1 min at room temperature, 12000 rpm; the supernatant removed by aspiration tube # 1, # 2 of the tube 1 # tube was added the supernatant, rocked 5-10 min; microfuge for 10 seconds at room temperature, 12000 rpm; lml with high salt buffer (10mM Tris-HCl pH7.5, ImM EDTA, 0.5M NaCl), washed 5 times, and centrifuged; Wash with 1ml low salt buffer (10mM Tris-HCl pH7.5, ImM EDTA, 0.1M NaCl), 5 times, centrifuged; 0.3ml The oligo (dT) pellet was suspended in a low-salt buffer and transferred to a micro-spin column, centrifuged at 12,000 rpm for 5 seconds; washed with 0.5 ml of low-salt buffer Centrifuge 3 times; collect mRNA with 2X0.2ml eluent; measure optical density with spectrophotometer and calculate OD260 / 280 ratio; get 300yl mRNA, add 7.5 μΐ glycogen, 30 μ 12.5M potassium acetate (ρΗ5.0) , 750μ1 absolute ethanol at -70. C was stored for future use; centrifuged for 5 minutes before use, washed with 75% ethanol, and dissolved in mR A by DEPC water.
1.3cDNA的合成 1.3 cDNA Synthesis
合成步骤参照 ZAP ExpressTmcDNA Synthesis Kit*and ZAP ExpressTmcDNAFor synthesis steps, refer to ZAP Express Tm cDNA Synthesis Kit * and ZAP Express Tm cDNA
Gigapack® II Gold Cloning Kit* (美国 Stregene公司, Catalog No.200403禾卩 200404)的 说明书。 Gigapack® II Gold Cloning Kit * (Stregene, Inc., Catalog No. 200403 and 200404).
在 0.5ml离心管中依次加入 5 μ 110X第一链缓冲液 ,3 μ 1甲基化的 dNTP混合物, 2μ1 1101连接子0^0((1丁)18引物 (1.4 §^1), 32.5 μ 1用 DEPC处理的去离子水, lwl RNA酶抑制剂 (40υ/μ1), 5ug mRNA, 置室温 10分钟。 再加入 1.5 μΐ莫洛尼氏 鼠白血病病毒 (MMLV) 反转录酶 (50ιι/μ1), 总反应体积 50μ1。 从中取出 5 μ 1转入 另一离心管, 加入 0.5μ1 α— 32Ρ三磷酸脱氧腺苷 (dATP) (800ci/mmol) 以鉴定第一链 合成质量。 上述反应均在 37°C进行。 In a 0.5ml centrifuge tube, add 5 μ 110X first-strand buffer, 3 μ 1 methylated dNTP mixture, 2 μ1 1101 linker 0 ^ 0 ( ( 1butyl) 18 primers (1.4 § ^ 1), 32.5 μ 1 DEPC-treated deionized water, lwl RNase inhibitor (40υ / μ1), 5ug mRNA, and set to room temperature for 10 minutes. Then add 1.5 μΐ Moloney murine leukemia virus (MMLV) reverse transcriptase (50ιι / μ1) ), The total reaction volume is 50μ1. Take 5μ1 from it and transfer it to another centrifuge tube, add 0.5μ1 α- 32- P-deoxyadenosine (dATP) (800ci / mmol) to identify the quality of the first chain synthesis. Performed at 37 ° C.
得到的 DNA/ NA杂交分子在 DNA聚合酶 I的作用下, 以第一链为模板合成第二 链。 在冰浴中依次加入 45μ1第一链 cDNA, 20μ110X第二链缓冲液, 6yldNTP混合 物, 114 μ 1去离子水, 2 μ 1[ a -32p]dATP(800ci/mmol), 2 μ 1R A酶 Η(1.5ιι/μ 1), 1 μ 1 DNA 聚合酶 I (9.0 u/μΐ), 总体积 200μ1。 混勾, 16°C孵育 2.5小时。 反应结束后, 用酚: 氯仿 (1: 1) 抽提, 乙醇沉淀。 Under the action of DNA polymerase I, the obtained DNA / NA hybrid molecule uses the first strand as a template to synthesize a second strand. Add 45 μ1 first strand cDNA, 20 μ110X second strand buffer, 6yldNTP mixture, 114 μ 1 deionized water, 2 μ 1 [a- 32 p] dATP (800ci / mmol), 2 μ 1R A enzyme in an ice bath in order. Η (1.5 μm / μ 1), 1 μ 1 DNA polymerase I (9.0 u / μΐ), total volume 200 μ1. Mix and incubate at 16 ° C for 2.5 hours. After the reaction was completed, extraction was performed with phenol: chloroform (1: 1), and ethanol was precipitated.
1.4 cDNA与载体的连接  1.4 Ligation of cDNA and Vector
从试剂盒中取出 9 U lEcoRI连接子(序列分别为 5'— AATTCGGCACGAG— 3'和 3' Remove the 9 U lEcoRI linker from the kit (sequences are 5 '-AATTCGGCACGAG-3' and 3 '
-GCCGTGCTC-5') 溶解沉淀。 取 Ιμΐ电泳, 鉴定第一和第二链合成质量。 在剩余 的 8 1第二链 cDNA中依次加入 1 μ 110 X连接酶缓冲液, 1 μ 110mmol/L Υ -三磷酸腺 苷(Y-ATP), l lT4DNA连接酶 (4ιι/μ1), 8°C水浴 16小时后, 70°C孵育 30分钟。 用 限制酶 Xhol消化 1.5小时。 琼脂糖凝胶 (SepHarose)Cl-2B过柱分离, 除去小于 400碱 基的核苷酸, 以提高全长 cDNA在 cDNA文库中的比例。 -GCCGTGCTC-5 ') dissolves the precipitate. Take 1 μΐ electrophoresis to identify the quality of the first and second strand synthesis. Add 1 μ 110 X ligase buffer, 1 μ 110 mmol / L Υ-adenosine triphosphate (Y-ATP), 11 T4 DNA ligase (4 ι / μ1), and 8 ° C water bath to the remaining 8 1 second-strand cDNA. After hours, incubate at 70 ° C for 30 minutes. Digest with restriction enzyme Xhol for 1.5 hours. Sepharose Cl-2B was separated by column to remove nucleotides less than 400 bases to increase the proportion of full-length cDNA in the cDNA library.
1.5 cDNA克隆入 ZAP噬菌体载体  1.5 cDNA cloned into ZAP phage vector
ZAP噬菌体载体 (美国 Stratagene公司) 上的多克隆位点允许插入长达 10Kb的核 酸片段, 进入宿主后质粒部分可从载体上切开, 形成质粒载体 BlUeScript。 该载体多克 隆位点两侧有 丁7和 T3噬菌体的启动子, 可以用于序列分析和探针合成。 插入载体的 cDNA片段可以表达具抗原性和生物活性的融合蛋白。 实验详述如下- 在离心管内加入 100ngcDNA, 0.5 μ 110X连接酶缓冲液, 0.5 μ 110mmol/L y -ΑΤΡ (pH7.5), lul ZAP噬菌体载体 (lug/ul), o.5ul T4 DNA连接酶(4u/ul), 加去离子水至总 体积 5μ1。 12°C连接 16小时。 The multiple cloning site on the ZAP phage vector (Stratagene, USA) allows insertion of nucleic acid fragments up to 10Kb. After entering the host, the plasmid portion can be cut from the vector to form the plasmid vector Bl UeS cript . Multiple cloning site of the vector points on both sides and have small T 3 7 phage promoters, can be used for probe synthesis and sequence analysis. The cDNA fragment inserted into the vector can express an antigenic and biologically active fusion protein. The experiment details are as follows-add 100ng cDNA, 0.5 μ 110X ligase buffer, 0.5 μ 110mmol / L y-ATP (pH7.5), lul ZAP phage vector (lug / ul), o.5ul T4 DNA ligase into the centrifuge tube (4u / ul), add deionized water to a total volume of 5μ1. Connect at 12 ° C for 16 hours.
连接产物需包装外壳蛋白以产生有转染活性的重组噬菌体。 快速从 -70°C取出包装 蛋白,溶解后,在 25ul包装蛋白内加 lul连接反应物,混勾, 22°C反应 2小时,加入 500ul SM缓冲液 (0.1M NaCl, 0.08M MgS04.7H20, 0.05M Tris-HCl, 0.01%明胶), 20ul氯 仿。 此混合物即为原始的 cDNA文库。 The ligation product requires packaging of the coat protein to produce a recombinant phage with transfection activity. Quickly remove the packaged protein from -70 ° C. After dissolving, add 1ul of the reaction reagent to the 25ul packaged protein, mix the hooks, and react at 22 ° C for 2 hours. Add 500ul SM buffer (0.1M NaCl, 0.08M MgS0 4 .7H 2 0, 0.05M Tris-HCl, 0.01% gelatin), 20ul chloroform. This mixture is the original cDNA library.
1.6计算阳性克隆的效价 1.6 Calculating the titer of positive clones
取 5ul原始的 cDNA文库, 用 45ul SM缓冲液稀释。 将 10ul稀释后的溶液, 加入 200ul感受态 XLl-Blue MRF宿主菌中 (OD600=0.5 )。 37°C水浴 20-30分钟, 加入 3ml 上层琼脂糖, 混匀, 铺于 NZY (0.09M NaCl, 0.08M MgS04.7H20, 0.5%酵母提取液, 1% NZ胺 A) 平板上, 倒置, 37Ό培养过夜, 计算平板上的克隆数。 Take 5ul of the original cDNA library and dilute it with 45ul SM buffer. 10 ul of the diluted solution was added to 200 ul of competent XLl-Blue MRF host bacteria (OD600 = 0.5). 37 ° C water bath for 20-30 minutes, add 3ml upper agarose, mix well, spread on NZY (0.09M NaCl, 0.08M MgS0 4 .7H 2 0, 0.5% yeast extract, 1% NZamine A) plate, Invert and incubate at 37 ° C overnight and count the number of clones on the plate.
cDNA文库的效价用噬菌斑成斑数( pfli/ml )表示。 pf /ml= (噬菌斑数 X稀释倍数) X 1000/稀释液用量 (ul)。 容量大于 1 X 106个克隆的 cDNA文库, 能够保证其中含有每一 个单拷贝的 mRNA.本发明成人主动脉 cDNA文库的库容量为 2.4X 106个独立重组克 隆。 The titer of the cDNA library is expressed as the number of plaque plaques (pfli / ml). pf / ml = (number of plaques x dilution factor) X 1000 / dilution amount (ul). A cDNA library with a capacity of more than 1 × 10 6 clones can ensure that it contains each single copy of the mRNA. The library capacity of the adult aortic cDNA library of the present invention is 2.4 × 10 6 independent recombinant clones.
L7 cDNA文库的扩增和保存  Amplification and preservation of L7 cDNA library
构建的 cDNA文库可直接用于筛选, 但不稳定。 因为非野生型的噬菌体易失活, 故需要扩增以方便多次筛选。 取 5 X 104个噬菌体转染 XLl-Blue MRF宿主菌, 铺板, 37 °C孵育 8-10小时, 然后在 150mm平皿中加入 8ml SM缓冲液, 4°C培养过夜。 离心, 收集上清, 即得到扩增后的 cDNA文库。 加入 0.3%氯仿, 4°C 保存。 长期保存需加入 7%的二甲基亚砜 (DMSO), -70°C冻存。 实施例二、 新全长 cDNA的克隆 The constructed cDNA library can be used directly for screening, but it is not stable. Because non-wild-type phage are susceptible to inactivation, they need to be amplified to facilitate multiple screenings. Take 5 × 10 4 phages to transfect the XLl-Blue MRF host bacteria, plate, incubate at 37 ° C for 8-10 hours, and then add 8 ml SM buffer to a 150mm dish, and incubate at 4 ° C overnight. Centrifuge and collect the supernatant to obtain an amplified cDNA library. Add 0.3% chloroform and store at 4 ° C. Long-term storage requires adding 7% dimethyl sulfoxide (DMSO) and freezing at -70 ° C. Example 2 Cloning of a New Full-length cDNA
2.1 随机克隆的多聚酶链反应 (PCR) 扩增 2.1 Random cloned polymerase chain reaction (PCR) amplification
cDNA文库铺盘, 噬菌斑密度为 200-500个克隆 /培养皿 (150mm), 挑取清亮的单 个噬菌斑转入含有 75ul SM缓冲液和 5ul氯仿的无菌离心管中, 置于 4°C。 用前混匀离 心, 取上清液 5ul, 用 ZAP噬菌体载体 3'端引物(5' CCAAGCTCGAAATTAACCCTCAC 3') 禾 B 5'端引物 (5' CAGTCAATTGTAATACGACTCACT 3') 进行 PCR扩增, 反应总体 积 50ul。 扩增参数为 94°C预变性 3分钟; 再 94Ό45秒, 55°C30秒, 72°C3分钟, 共 30 个循环; 72Ό延伸 5-10分钟。 根据 1%琼脂糖凝胶中电泳带的亮度估算 PCR产物的产  cDNA library is plated, and the plaque density is 200-500 clones / dish (150mm). Pick a single clear plaque and transfer it into a sterile centrifuge tube containing 75ul SM buffer and 5ul chloroform. ° C. Mix and centrifuge before use, take 5ul of the supernatant, and use the 3 'end primer (5' CCAAGCTCGAAATTAACCCTCAC 3 ') and 5' end primer (5 'CAGTCAATTGTAATACGACTCACT 3') of ZAP phage vector for PCR amplification. The total reaction volume is 50ul. The amplification parameters were pre-denatured at 94 ° C for 3 minutes; then 94Ό45 seconds, 55 ° C for 30 seconds, and 72 ° C for 3 minutes, a total of 30 cycles; 72Ό extended for 5-10 minutes. Estimate the production of PCR products based on the brightness of the electrophoretic bands on a 1% agarose gel
2.2表达序列标签 (EST) 的序列测定 2.2 Sequence determination of expressed sequence tags (EST)
AJBI377 自动测序仪 ( ABI PRISM™377DNA sequencer ) 和自动测序试剂盒 (BigDye™ Terminator Ready Reaction Mix) 购自美国 P£公司。 依照推荐的使用条件, 用双脱氧链终止法测序。  AJBI377 automatic sequencer (ABI PRISM ™ 377 DNA sequencer) and automatic sequencing kit (BigDye ™ Terminator Ready Reaction Mix) were purchased from the company P £ 美国. Sequencing using dideoxy chain termination according to recommended conditions of use.
用非放射性 CY5荧光素(CY5-fluoroscein)作标记物,通用测序引物 T3( 5' ATT AAC CCT CAC TAA AGG GA 3') 和 Τ7 (5' TAA TAC GAC TCA CTA TAG GG3') 进行测序, 每份样品中引物用量为 5pmol/ul。 测序模板为 PCR产物, 用量约 30-100 ng。 PCR扩增 参数为 94°C 3-5分钟; 再 94°C 30秒, 50°C 15秒, 72°C 1分钟, 20个循环; 94°C 30 秒, 72°C 1分钟, 15个循环; 再 72Ό 延伸 5分钟。 DNA产物在 8mol/L尿素、 6%聚 丙烯酰胺凝胶板上电泳。电压 1500V ,功率 34W,电泳 250-300分钟(ALF Express™ DNA sequence, 瑞典 pHarmacia公司)。 Using non-radioactive CY5-fluoroscein as a marker, universal sequencing primers T 3 (5 'ATT AAC CCT CAC TAA AGG GA 3') and T 7 (5 'TAA TAC GAC TCA CTA TAG GG3') for sequencing The amount of primer in each sample is 5 pmol/ul. The sequencing template is a PCR product in an amount of about 30-100 ng. The PCR amplification parameters are 94 ° C for 3-5 minutes; 94 ° C for 30 seconds, 50 ° C for 15 seconds, 72 ° C for 1 minute, 20 cycles; 94 ° C 30 Second, 72 ° C for 1 minute, 15 cycles; 72 再 for 5 minutes. The DNA product was electrophoresed on 8 mol / L urea, 6% polyacrylamide gel plate. Voltage 1500V, power 34W, electrophoresis 250-300 minutes (ALF Express ™ DNA sequence, pHarmacia, Sweden).
2.3 EST的生物信息学分析 2.3 Bioinformatics analysis of EST
用美国生物信息中心的 BLAST (Basic Local Alignment Search Tool ) 软件, 将每 个 cDNA 克隆的 EST 与 GenBank/EMBL DDBJ 数据库进行同源性 比较 ( http://www.ncbi.nlm.nih.gov ) .根据 BLAST的判断标准 (国内外大多数实验室的通 用标准): 同源序列小于 100— 200个碱基, Score值小于 100的序列为新的 EST。 本发 明 Fwap 10576的 EST为新 EST。 ' 2.4 EST引物步移法测序  The BEST (Basic Local Alignment Search Tool) software of the American Bioinformatics Center was used to compare the EST of each cDNA clone with the GenBank / EMBL DDBJ database for homology (http://www.ncbi.nlm.nih.gov). According to the BLAST judgment standard (common standard for most laboratories at home and abroad): A sequence with a homologous sequence less than 100-200 bases and a score less than 100 is the new EST. The EST of Fwap 10576 of the present invention is a new EST. '' 2.4 EST Primer Sequencing
2.4.1 ZAP噬菌体的体内环化  2.4.1 ZAP phage in vivo cyclization
ZAP噬菌体载体能将目的片段在宿主内直接从 λ噬菌体载体转移到质粒, 环化为 PBK-CMV (带有 CMV病毒早期启动子) 噬菌粒。 环化步骤参照说明书 (ZAP Express cDNA Synthesis kit and ZAP Express cDNA Gigapacktm Gold Doning kit)。 The ZAP phage vector can directly transfer the target fragment from the lambda phage vector to the plasmid in the host, and circularize it into a PBK-CMV (with CMV virus early promoter) phagemid. For cyclization steps, refer to the instructions (ZAP Express cDNA Synthesis kit and ZAP Express cDNA Gigapack tm Gold Doning kit).
用 3 ul保存在 4 °C携带新 EST的噬菌体和 lul辅助噬菌体 (一类自身复制能力极 低的噬菌体突变体, 可以为寄主细胞中质粒 DNA的 复制与包装提供蛋白酶和外壳蛋 白质) 共转染 300ul大肠杆菌 XLl -Blue MRF株 (OD600=1.0)。 获得单链 DNA后, 再 转染大肠杆菌 XLOLR株 (试剂盒提供), 在试管内加 5 mlLB培养液, 2 5ul卡那霉素, 37°C培养 12— 16小时。  Cotransfection with 3 ul of phage carrying the new EST and 1 ul of helper phage (a type of phage mutant with very low self-replication ability, which can provide proteases and coat proteins for the replication and packaging of plasmid DNA in host cells) 300ul E. coli XLl-Blue MRF strain (OD600 = 1.0). After obtaining single-stranded DNA, transfect E. coli XLOLR strain (provided in the kit), add 5 ml LB culture solution, 25 ul kanamycin, and incubate at 37 ° C for 12-16 hours.
2.4.2质粒的提取和鉴定 2.4.2 Extraction and identification of plasmids
用德国 QIAGEN公司的 " QIAPrep Spin Miniprep kit"提取质粒。 2400rpm, 4°C离 心 10分钟,收集过夜培养的细菌。弃上清,加入 25ul缓冲液 Pl ( 100ul/ml RNaseA,50mM Tris/HCl, 10mM EDTA, pH8.0 ) 悬浮细菌, 移至灭菌的 1.5ml离心管内。 力卩 250ul缓 冲液 P2 ( 200mM NaOH, 1% SDS ) ,颠倒上清几次,充分混匀。加 350ul缓冲液 P3 ( 3.0M KAc,pH5.5 ), 立刻摇管 4-6次。 12000rpm, 离心 10分钟 (SORVALL® Mc l2V台式离 心机)。 收集上清, 将其移至底部套有收集管的微型纯化柱 (QIA prep Spin Miniprep ) 内, 12000rpm,离心 30-60秒。加 0.75ul缓冲液 TE ( 10mM Tris/HCL, lmM EDTA,pH8.0), 离心 30-60秒。 去掉收集管, 在 QLAprep微型纯化柱底部套一个灭菌的离心管, 加 50ul 缓冲液 EB ( lOmM Tris-HCL pH8.5 ) 或去离子水, 在柱床内保留 1分钟后离心 1分钟, 收集纯化的 DNA。  The plasmid was extracted with "QIAPrep Spin Miniprep kit" from Germany QIAGEN. Centrifuge at 2400 rpm and 4 ° C for 10 minutes. Collect overnight cultured bacteria. Discard the supernatant, add 25ul buffer Pl (100ul / ml RNaseA, 50mM Tris / HCl, 10mM EDTA, pH8.0) to suspend the bacteria, and transfer to a sterile 1.5ml centrifuge tube. Try to add 250ul buffer P2 (200mM NaOH, 1% SDS), invert the supernatant several times, and mix thoroughly. Add 350ul of buffer solution P3 (3.0M KAc, pH 5.5) and immediately shake the tube 4-6 times. Centrifuge at 12,000 rpm for 10 minutes (SORVALL® Mc l2V benchtop centrifuge). The supernatant was collected and transferred to a mini purification column (QIA prep Spin Miniprep) with a collection tube at the bottom, and centrifuged at 12000 rpm for 30-60 seconds. Add 0.75ul buffer TE (10mM Tris / HCL, 1mM EDTA, pH8.0) and centrifuge for 30-60 seconds. Remove the collection tube, put a sterilized centrifuge tube on the bottom of the QLAprep micro purification column, add 50ul buffer EB (10mM Tris-HCL pH8.5) or deionized water, leave it in the column bed for 1 minute, and centrifuge for 1 minute to collect Purified DNA.
在离心管内加入 3ul酶切缓冲液 ( 10 X ) , lul Notl内切酶 ( 15u/ ul), lul ECoRI 内切酶 ( 15u/ul ) , lulBSA, 2ulDNA, 22ul去离子水, 总体积 30ul。 37°C温育 4-6小时。 酶切后鉴定质粒大小。  Add 3ul of digestion buffer (10X), lul of Notl endonuclease (15u / ul), lul of ECoRI endonuclease (15u / ul), lulBSA, 2ul DNA, 22ul deionized water, and a total volume of 30ul to the centrifuge tube. Incubate at 37 ° C for 4-6 hours. The size of the plasmid was identified after digestion.
2.4.3新的全长 cDNA的测定 2.4.3 Determination of new full-length cDNA
用美国 PE公司的 ABD77 自动测序仪和测序试剂盒 BigDye™ Terminator Ready Reaction Mix测定 PBK-CMV阳性克隆的序列。 Using ABD77 Auto Sequencer and Sequencing Kit BigDye ™ Terminator Ready from PE Company Reaction Mix determined the sequence of PBK-CMV positive clones.
反应液中有 BD 4ul, BOB 2ul (400mM Tris-HCl, pH9.0, lOmM Mg Cl2), 引物 2 ul(5pmol/ ul), DNA模板 30-100 ng, 用 H20补足至终体积 20ul。 用步移法 (逐级引物 法) 测定 cDNA全长序列, 即下一轮的测序引物由上轮测序所得产物的末端碱基确定。 用 oligo 14. 0软件设计 PCR引物。 The reaction solution contains BD 4ul, BOB 2ul (400mM Tris-HCl, pH9.0, 10mM Mg Cl 2 ), primers 2 ul (5 pmol/ul), DNA template 30-100 ng, and supplemented with H 2 0 to a final volume of 20ul . The full-length cDNA sequence was determined by the step-by-step method (sequential primer method), that is, the next round of sequencing primers was determined by the terminal bases of the products obtained from the previous round of sequencing. PCR primers were designed with oligo 14.0 software.
结果:  Results:
如 SEQ ID NO: 1所示, Fwapl0576 cDNA全长 1083个碱基对。 推测其起始密码子 为 213至 215核苷酸 (ATG), 终止密码子为 681至 683位核苷酸。 开放读码框架为 213 至 683位核苷酸, 编码一个由 156个氨基酸残基组成的多肽。 BLAST分析表明该基因定 位与 16号染色体。  As shown in SEQ ID NO: 1, the Fwapl0576 cDNA is 1083 base pairs in length. It is speculated that the start codon is 213 to 215 nucleotides (ATG) and the stop codon is 681 to 683 nucleotides. The open reading frame is 213 to 683 nucleotides and encodes a polypeptide consisting of 156 amino acid residues. BLAST analysis showed that the gene was located on chromosome 16.
蛋白同源性分析表明: Fwapl0576 蛋白与目前抑制的蛋白无序列同源性。 其蛋白 序列特征为; (A) 1至 34 Aa为信号肽。 (B) 2至 7 Aa (GSTWGS ) , 19至 24 Aa (GLVLSL), 46至 51 Aa (GTAISC), 96至 101 Aa (GVSPCC) , 118至 123 Aa (GGLQAL) 为 N-豆蔻 酰化位点。 (C) 33至 39 Aa (RARDRDY)为络氨酸激酶磷酸化位点。 (D) 56至 58 Aa ( SSR) 为蛋白激酶 C磷酸化位点。 (E) 77至 80 Aa (NQSN) 为 N-糖基化位点。 实施例三、 Fwapl0576在正常组织的分布  Protein homology analysis showed that: Fwapl0576 protein has no sequence homology with the currently inhibited protein. Its protein sequence is characterized by: (A) 1 to 34 Aa is a signal peptide. (B) 2 to 7 Aa (GSTWGS), 19 to 24 Aa (GLVLSL), 46 to 51 Aa (GTAISC), 96 to 101 Aa (GVSPCC), 118 to 123 Aa (GGLQAL) are N-myristoylation sites . (C) 33 to 39 Aa (RARDRDY) is a tyrosine kinase phosphorylation site. (D) 56 to 58 Aa (SSR) are protein kinase C phosphorylation sites. (E) 77 to 80 Aa (NQSN) are N-glycosylation sites. Example 3 Distribution of Fwapl0576 in Normal Tissue
3. 1 实验材料 3.1 Experimental materials
含 12种组织的 mRNA的多组织膜 (MTN膜) 购自美国 Clontech公司, 用其检测 Fwapl0576基因在正常组织中的分布。 β-actin是一种管家基因, 在多种组织中表达均 一, 本实验中用作对照。  A multi-tissue membrane (MTN membrane) containing mRNA from 12 tissues was purchased from Clontech, USA, and used to detect the distribution of Fwapl0576 gene in normal tissues. β-actin is a housekeeping gene that is expressed uniformly in a variety of tissues and was used as a control in this experiment.
3. 2 Northern杂交 3. 2 Northern hybridization
方法参照 《现代分子生物学实验技术》 (卢圣栋主编, 中国协和医科大学出版社, 第二版, 1999) 147-149, 202-205, 207-213页。 详述如下:  Methods Refer to "Modern Molecular Biology Experimental Technology" (Editor Lu Shengdong, China Union Medical College Press, Second Edition, 1999) 147-149, 202-205, 207-213. Details are as follows:
3. 2. 1 总 RNA提取 3.2.1 Total RNA extraction
称取 0. 5g (成人心脏, 胎儿心脏, 室壁瘤组织)组织于 50ml离心管中, 加入 10ml GTC, 匀浆。 加等体积水饱和酚及 0. 2体积氯仿, 剧烈振荡 15秒, 冰上放置 20分钟。 4°C, 12, OOOrpm离心 25分钟。 取上清置于另一离心管, 加等体积异丙醇, - 2(TC沉淀 1 小时。 4°C 12, OOOrpm离心 25分钟, 弃上清。 用 5mlGTC重新溶解沉淀后, 重复其它 操作。 用 lml预冷的 75%乙醇洗涤, 晾干, 用 DEPC处理过的水溶解。 测 0D (光密度) 260 及 0D280。  Weigh 0.5g (adult heart, fetal heart, ventricular tumor tissue) of tissue into a 50ml centrifuge tube, add 10ml GTC, and homogenize. Add equal volume of water-saturated phenol and 0.2 volume of chloroform, shake vigorously for 15 seconds, and leave on ice for 20 minutes. Centrifuge at 12, ° C for 25 minutes at 4 ° C. Take the supernatant and place it in another centrifuge tube, add an equal volume of isopropanol, and precipitate at -2 (TC for 1 hour. Centrifuge at 4 ° C 12, OOOrpm for 25 minutes, discard the supernatant. After re-dissolving the pellet with 5 ml GTC, repeat the other operations. Wash with 1 ml of pre-chilled 75% ethanol, dry, and dissolve with DEPC-treated water. Measure 0D (optical density) 260 and 0D280.
3. 2. 2 甲醛变性凝胶电泳  3. 2. 2 formaldehyde denaturing gel electrophoresis
称取 0. 6g琼脂糖凝胶加入 52. 2ml DEPC处理过的水中, 加热溶解, 待胶冷到 65 V ,加入 6. 0ml 10 X MOPS, 1. 8ml甲醛,灌胶。取 4. 5ul (40- 60ug)总 RNA,加入 2. Oul lO X M0PS, 3. 5ul 甲醛, lOul甲酰胺, 混匀, 65°C变性 15分钟, 冰上冷却 2分钟。 加入 2.0ul 上样缓冲液, 混匀。 50伏预电泳 5分钟, 上样。 待染料全部进入胶后, 电压降 为 40伏, 每 10分钟混合电泳缓冲液 1次。 0.6g of agarose gel was weighed and added to 52.2ml of DEPC-treated water, heated to dissolve, and the gel was cooled to 65 V, 6.0ml 10 X MOPS, 1.8ml formaldehyde was added, and the gel was poured. Take 4.5ul (40-60ug) total RNA, add 2. Oul lO X MOPS, 3. 5ul formaldehyde, lOul formamide, mix well, denature at 65 ° C for 15 minutes, and cool on ice for 2 minutes. Join Mix 2.0ul loading buffer. Load at 50 volts for 5 minutes. After all the dye enters the gel, the voltage drop is 40 volts, and the electrophoresis buffer is mixed once every 10 minutes.
3.2.3转膜 3.2.3 Transfer film
待溴酚兰泳动到凝胶底部,停止电泳,照相。用 DEPC处理过的水洗胶数次,用 50mM NaOH处理 45分钟, 用 20XSSC处理 45分钟。 尼龙膜先用去离子水浸湿, 再用 20XSSC 处理 45分钟。 在胶托上铺一层滤纸, 用 20XSSC浸湿, 除去气泡; 将胶倒置于胶托上, 其上面放一中间挖空的塑料薄片。小心将膜置于胶上,除去气泡,在膜上铺两张 20XSSC 浸湿的滤纸, 除去气泡。 在滤纸上铺上 10cm高的吸水纸, 压一 500克的重物。 转膜 16 小时, 中间换吸水纸 2- 3次。 小心取下膜, 照相, 用 6XSSC泡膜 5分钟。 紫外交联, 8(TC烤膜 1小时, 4°C保存备用。  After the bromophenol blue swims to the bottom of the gel, stop electrophoresis and take a picture. The gel was washed several times with DEPC-treated water, treated with 50 mM NaOH for 45 minutes, and treated with 20XSSC for 45 minutes. The nylon membrane was first wetted with deionized water and then treated with 20XSSC for 45 minutes. Lay a layer of filter paper on the rubber tray, soak it with 20XSSC to remove air bubbles; place the glue on the rubber tray, and place a plastic sheet hollowed out on it. Carefully place the membrane on the gel to remove air bubbles, and spread two 20XSSC-soaked filter paper on the membrane to remove air bubbles. Place a 10 cm high absorbent paper on the filter paper and press a 500 g weight. Turn the film for 16 hours, and change the absorbent paper 2-3 times. Carefully remove the membrane, take a picture, and bubble the membrane with 6XSSC for 5 minutes. UV cross-linked, 8 (TC baking film for 1 hour, 4 ° C stored for future use.
3.2.4 制备杂交模板 3.2.4 Preparation of hybridization templates
上游引物: 5' -CC GAATTC ATGCACCGGCTCATCTTTGTC- 3', 斜体所示为保护碱基, 黑体所示为 EcoRI酶切位点, 划线部分与 Fwapl0576核酸序列 107-127位互补; 下游 引物: 5' -GC CTCGAG TCTTATCGAGGTGGTCTTGAGCTG _3,, 斜体所示为保护碱基, 黑体 所示为 Xhol酶切位点, 划线部分与 Fwapl0576核酸序列 1198-1221位互补。  Upstream primer: 5 '-CC GAATTC ATGCACCGGCTCATCTTTGTC- 3'. Protected bases are shown in italics, EcoRI digestion sites are shown in bold. The underlined parts are complementary to positions 107-127 of the Fwapl0576 nucleic acid sequence. Downstream primers: 5 '- GC CTCGAG TCTTATCGAGGTGGTCTTGAGCTG_3 ,, in italics are protective bases, in bold are Xhol restriction sites, and the underlined part is complementary to positions 1198-1221 of the Fwapl0576 nucleic acid sequence.
PCR反应体系: 10倍缓冲液 5.0ul,脱氧核糖核酸 2.0ul,上游、下游引物各 3.0ul, Taq酶 l.Oul, Fwapl0576测序质粒 (模板) 2.0ul, 无菌水 34ul。 PCR参数: 94°C预 变性 3分钟; 94°C3分钟, 94°C20秒, 6CTC30秒, 72°C80秒, 30个循环。 72°C7分钟。 用醋酸铵 /乙醇(1: 5)纯化 PCR产物, 溶于 50ulTE, 用琼脂糖定量, 将其稀释至 25ng/ μ 1。  PCR reaction system: 5.0-fold buffer 5.0ul, 2.0ul DNA, 3.0ul upstream and downstream primers, Taq enzyme l.Oul, Fwapl0576 sequencing plasmid (template) 2.0ul, sterile water 34ul. PCR parameters: 94 ° C for 3 minutes; 94 ° C for 3 minutes, 94 ° C for 20 seconds, 6CTC for 30 seconds, 72 ° C for 80 seconds, 30 cycles. 72 ° C for 7 minutes. The PCR product was purified with ammonium acetate / ethanol (1: 5), dissolved in 50ulTE, quantified with agarose, and diluted to 25ng / μ1.
3.2.5杂交  3.2.5 Crossing
标记探针: 在 0.5ml离心管中加入 PCR产物 (在 98°C加热 4分钟变性, 冰上冷 却 2分钟) 25ng, 5X标记缓冲液 10ul, dNTP (无 dCTP) 2.0ul, BSA 2.0ul, Klenow酶 l.Oul, [a-32P]dCTP 5.0ul, 用无核酸酶的水补至总体积 50ul。 室温反应 1-3小时。  Labeled probe: Add the PCR product to a 0.5ml centrifuge tube (denatured by heating at 98 ° C for 4 minutes and cooled on ice for 2 minutes) 25ng, 5ul of 5X labeling buffer, dNTP (no dCTP) 2.0ul, BSA 2.0ul, Klenow Enzyme l.Oul, [a-32P] dCTP 5.0ul, make up to a total volume of 50ul with nuclease-free water. Reaction at room temperature for 1-3 hours.
预杂交:将膜用 6 X SSC浸 5分钟,贴于杂交管壁,除去气泡。加入 6ml购于 Clontech 的杂交液, 68°C 1小时。  Pre-hybridization: Soak the membrane with 6 X SSC for 5 minutes, and stick it to the wall of the hybridization tube to remove air bubbles. Add 6 ml of hybridization solution purchased from Clontech, 68 ° C for 1 hour.
杂交: 倒掉杂交液, 加入预热的杂交液 6ml, 加入探针 (探针需在 98°C加热 4分 钟变性, 冰上冷却 2分钟), 68 3小时。  Hybridization: Discard the hybridization solution, add 6ml of pre-warmed hybridization solution, and add the probe (the probe needs to be denatured by heating at 98 ° C for 4 minutes, and cooled on ice for 2 minutes), 68 for 3 hours.
洗膜: 先用 200ml洗液 I (2XSSC, 0.05% SDS) 在室温洗膜四次, 每次 10分钟。 再用 200ml洗液 11(0. IX SSC;, 0.1%SDS)在 50°C洗 20分钟, 56°C洗 20分钟。  Washing the membrane: First wash the membrane with 200ml of Washing Solution I (2XSSC, 0.05% SDS) four times at room temperature for 10 minutes each. Then, wash with 200 ml of washing solution 11 (0.1 IX SSC; 0.1% SDS) at 50 ° C for 20 minutes and 56 ° C for 20 minutes.
压片: 用滤纸吸去液体, 用保鲜膜包好, 贴于一张与 X光片相同大小的滤纸上, 压片。 - 70Ό曝光适当时间。 洗片。  Tableting: Absorb the liquid with filter paper, wrap it with cling film, and paste it on a piece of filter paper of the same size as the X-ray film. -70Ό exposure time. Wash the tablets.
结果: 如图 1所示: β-actin在多种组织中的表达水平均一 (图 1A); Fwapl0576 选择性地在肝脏、 肾脏和心脏中表达, 表达水平依次降低 (图 1B)。 实施例四、 Fwapl0576基因在肿瘤细胞株中的表达 Results: As shown in Figure 1: β-actin expression level in various tissues was one (Figure 1A); Fwapl0576 was selectively expressed in liver, kidney, and heart, and the expression level decreased in turn (Figure 1B). Example 4 Expression of Fwapl0576 Gene in Tumor Cell Lines
4. 1 实验材料  4. 1 Experimental materials
含 8种肿瘤细胞系的杂交膜购自美国 Clontech公司, 用其检测 Fwapl0576基因 在不同肿瘤细胞株中的分布。 β-actin作为本实验的对照。  Hybrid membranes containing 8 tumor cell lines were purchased from Clontech, USA, and used to detect the distribution of Fwapl0576 gene in different tumor cell lines. β-actin served as a control for this experiment.
4. 2 Northern 杂交 4. 2 Northern Hybridization
参见实施例 3. 2。  See Example 3.2.
结果: 如图 2所示, 在所检查的 8种肿瘤细胞株中, 下列组织表达 Fwapl0576基 因: 肺癌 A549细胞株, Burkitt's淋巴瘤, 黑色素瘤 G— 361细胞株, 淋巴细胞白血病 MDL— 4细胞株, 慢性粒细胞白血病 K一 562细胞株, 其表达水平依次降低。 而结构直肠 腺癌 SW480细胞株不表达 Fwapl0576基因。 实例五、 Fwapl0576基因在不同心肌细胞中表达的差异  Results: As shown in Figure 2, among the 8 tumor cell lines examined, the following tissues expressed the Fwapl0576 gene: lung cancer A549 cell line, Burkitt's lymphoma, melanoma G-361 cell line, and lymphocytic leukemia MDL-4 cell line The expression level of chronic myelogenous leukemia K-562 cell line decreased in turn. The structural rectal adenocarcinoma SW480 cell line does not express the Fwapl0576 gene. Example 5: Differences in the expression of Fwapl0576 gene in different cardiomyocytes
5. 1 实验材料  5. 1 Experimental materials
来自成人、 胎儿和陈旧行心肌梗塞室壁瘤患者的心肌细胞。  Cardiomyocytes from Adults, Fetuses, and Old Patients with Myocardial Infarction and Ventricular Tumors
5. 2 Northern 杂交 5. 2 Northern Hybridization
参见实施例 3. 2。  See Example 3.2.
结果: 正常成人心脏几乎不表达 Fwapl0576, 胎儿心脏表达 Fwapl0576, 成人心 脏室壁瘤组织较胎儿心脏 20倍高表达 Fwapl0576。 结果提示, Fwapl0576与心脏发育 有关。 当出生后, 由于心肌细胞成为 GD期静息细胞, 胎儿期很多与心脏有关的基因不 表达, 当心脏因缺血而心肌凋亡坏死时, 心脏修复, 胚胎期表达的基因再度表达。 实施例六、 FwaP10576基因在正常、 慢性心衰和亚急性心衰动物心脏中的表达 Results: Fwapl0576 was scarcely expressed in normal adult hearts, Fwapl0576 was expressed in fetal hearts, and ventricular aneurysm tissue in adults showed 20-fold higher expression of Fwapl0576. The results suggest that Fwapl0576 is related to cardiac development. After birth, because cardiac muscle cells become resting cells in the GD phase, many genes related to the heart are not expressed during the fetal phase. When the heart is apoptotic and necrotic due to ischemia, the heart is repaired and the genes expressed during the embryonic phase are expressed again. Example 6 Expression of Fwa P 10576 Gene in Hearts of Normal, Chronic Heart Failure and Subacute Heart Failure Animals
6. 1 慢性心衰模型的建立  6. 1 Establishment of chronic heart failure model
50只雄性 Sprague- Dawley (SD)大鼠 (250— 300克 /只) 购自本院动物房。 标准块 料由北京动物中心提供, 饮水为自来水, 水与饲料由动物随意摄取。  Fifty male Sprague-Dawley (SD) rats (250-300 g / head) were purchased from the animal room of the hospital. The standard blocks were provided by the Beijing Animal Center. Drinking water was tap water, and water and feed were ingested at will by the animals.
称重, 根据体重以氯胺酮和安定腹腔内注射全麻大鼠。 行气管内插管并接小型动 物呼吸机。 在心电监护仪的监护下左侧开胸, 以 6- 10手术缝线结扎左冠状动脉前降支, 关胸。 以心电监护仪上有明显 ST段升高为结扎成功的标志。 待其苏醒后撤除呼吸机。 术后饲养条件同术前, 50天后模型即建成。  Weigh the rats by intraperitoneal injection of general anesthesia with ketamine and diazepam according to body weight. Intubate the trachea and connect a small animal ventilator. Under the monitoring of the ECG monitor, open the left chest, ligate the left descending coronary artery with 6-10 surgical sutures, and close the chest. A marked ST segment elevation on the ECG monitor is a sign of successful ligation. Remove the ventilator after he wakes up. Postoperative feeding conditions were the same as before, and the model was built after 50 days.
6. 2亚急性心衰模型的建立 6.2 Establishment of a Subacute Heart Failure Model
10只雄性 Wistar大鼠 (250克 /只) 购自解放军 301医院, 饲养条件同慢性心衰模 型。  Ten male Wistar rats (250 g / head) were purchased from the 301 Hospital of the Chinese People's Liberation Army. The feeding conditions were the same as those of the chronic heart failure model.
腹腔注射去甲肾上腺素 30mg/日 /只, 连续注射 4天, 第 5天模型即可以使用。  Intraperitoneal injection of norepinephrine 30mg / day / head, continuous injection for 4 days, the model can be used on the 5th day.
6. 3 RNA-RNA 原位杂交 6. 3 RNA-RNA in situ hybridization
原位杂交技术基于碱基互补的原理, 通过探针特异性地与细胞内特定的 mRNA或 DNA杂交, 而显现出细胞内的基因及表达产物。 该反应灵敏度极高, 而且可检测出组 织分化过程中仅瞬间表达的基因。 杂交试剂盒 DIG RNA Labeling kit (Cat. No.1175025) 购自德国 Boehringer Mannheim 公司。 In situ hybridization is based on the principle of base complementarity, and specifically probes into specific mRNA or The DNA hybridizes to reveal genes and expression products in the cell. The response is extremely sensitive, and genes that are expressed only transiently during tissue differentiation can be detected. The hybridization kit DIG RNA Labeling kit (Cat. No.1175025) was purchased from Boehringer Mannheim, Germany.
6.3.1探针制备 6.3.1 Probe Preparation
特异引物 PCR, 将 200-300 bp Fwapl0576的核酸片段 (第 248至 508位核苷酸) 克隆入 T Vector; 重组质粒扩增, 纯化; 用 T7和 SP6引物进行 PCR扩增; 特异引物 和载体 T7和 SP6引物 PCR定基因插入方向, 测序 (mRNA和 Anti_mRNA)。 加 T7RNA聚 合酶合成反义探针, SP6 RNA聚合酶正义探针( 检查杂交系统的可靠性) 。  Specific primer PCR, 200-300 bp Fwapl0576 nucleic acid fragment (nucleotides 248 to 508) was cloned into T Vector; recombinant plasmid amplification and purification; PCR amplification using T7 and SP6 primers; specific primers and vector T7 The gene insertion direction was determined by PCR with SP6 primers and sequenced (mRNA and Anti_mRNA). Add T7RNA polymerase antisense probe and SP6 RNA polymerase sense probe (check the reliability of the hybridization system).
6.3.2探针标记 6.3.2 Probe labeling
先用酚 /氯仿抽提被转录的线形 DNA, 再用酒精沉淀。将无 RNA酶的离心管置冰上, 向管内加入 Ιμΐ纯化的线性 DNA, 2μ1 ΝΤΡ标记混合液, 2μ110Χ转录缓冲液, Ιμΐ RNA 酶抑制剂, 2 l(40u)SP6或 Τ7 TNA聚合酶, 共 20μ 1。 混匀, 稍加离心, 加入 20 u不 含 RNA的 DNA酶 I, 37°C15分钟。 加入 2μ1 0.2mol/L EDTA(pH8.0)以终止聚合反应。  The transcribed linear DNA was extracted with phenol / chloroform and then precipitated with alcohol. Place the RNase-free centrifuge tube on ice, and add 1 μΐ of purified linear DNA, 2 μ1 NTP labeling mixture, 2 μ110 × transcription buffer, 1 μΐ RNase inhibitor, 2 l (40u) SP6 or T7 TNA polymerase to the tube. 20μ 1. Mix well, centrifuge slightly, add 20 u of DNase I without RNA, 37 ° C for 15 minutes. 2 μ1 of 0.2 mol / L EDTA (pH 8.0) was added to terminate the polymerization reaction.
在上述物质中加入 2。 5 l 4mol/L Licl、 和 75 μ 酒精(_20°C)的充分混勾, -70 °C放置至少 30分钟 (或- 20°C放置至少 2小时)。 12000rpm离心, 70%冷乙醇洗涤, 干 燥后。 加 ΙΟΟμΙ DEPC水和 20u RNase, 37°C静置 30分钟后分装, _20°C保存。  Add 2 to the above. Mix thoroughly with 5 l 4mol / L Licl, and 75 μ alcohol (_20 ° C), and leave at -70 ° C for at least 30 minutes (or -20 ° C for at least 2 hours). Centrifuge at 12,000 rpm, wash with 70% cold ethanol, and dry. Add ΙΟΟμΙ DEPC water and 20u RNase, leave at 37 ° C for 30 minutes, aliquot, and store at -20 ° C.
6.3.3 玻片处理及标本制备 6.3.3 Slide processing and specimen preparation
彻底清洗玻片, 高压消毒 30分钟, 将玻片在含有多聚赖氨酸 (0.01%) 的溶液中 浸蘸几下, 干燥, 4°C备用。  Wash the slides thoroughly and autoclave for 30 minutes. Dip the slides in a solution containing polylysine (0.01%) for a few times, dry, and store at 4 ° C until use.
新鲜标本 (鼠冰冻切片) 0.4cmX0.4cm, 用 1XPBS冲洗两次, 置于冰冻切片机固 定头上。8-10 μηι切片,置有 lmg/ml多聚赖氨酸的载玻片上晾干,4%多聚甲醛固定 15-20 分钟。 1 X PBS冲冼 2次,每次 5分钟.  Fresh specimens (rat frozen sections) 0.4cmX0.4cm, rinsed twice with 1XPBS, and placed on the fixed head of the frozen microtome. Sections of 8-10 μηι were placed on a glass slide with 1 mg / ml polylysine and allowed to dry, and fixed with 4% paraformaldehyde for 15-20 minutes. Rinse 1 X PBS 2 times for 5 minutes each.
6.3.4 杂交前处理 6.3.4 Pre-hybridization
用 0.2N HC1浸泡 25分钟。 0.3%的 Triton X- 100浸泡 5分钟。 用 1 XPBS洗两次, 每次 5分钟。用 4%的多聚甲醛后固定 6分钟。用 1 XPBS洗两次,每次 5分钟。在 1000ml 0. lmol/L三乙醇胺 (pH8.0)溶液中加入 5ml乙酸酐, 待其完全溶解将切片置于 10分钟。 以上反应均在室温下进行。  Immerse in 0.2N HC1 for 25 minutes. 0.3% Triton X-100 for 5 minutes. Wash twice with 1 XPBS for 5 minutes each. After 4% paraformaldehyde fixation for 6 minutes. Wash twice with 1 XPBS for 5 minutes each. 5 ml of acetic anhydride was added to 1000 ml of a 0.1 mol / L triethanolamine (pH 8.0) solution, and the sections were left to stand for 10 minutes after they were completely dissolved. The above reactions are all performed at room temperature.
6.3.5杂交反应 6.3.5 Hybridization reactions
杂交液含有 5ml去离子甲酰胺, 2.5ml 20XSSC, 500 μΐ lOOXDenhardt's液 ( 10g 聚蔗糖, 10g聚乙烯吡咯垸酮, 10g牛血清白蛋白, 500ml消毒双蒸水), 500 ul 10%SDS, ΙΟΟμΙ 10mg/ml变性的鲑鱼精子 DNA, 400 ΐ DEPC水。  The hybridization solution contains 5ml deionized formamide, 2.5ml 20XSSC, 500 μΐ lOOXDenhardt's solution (10g polysucrose, 10g polyvinylpyrrolidone, 10g bovine serum albumin, 500ml sterilized double distilled water), 500 ul 10% SDS, 100 μl 10mg / ml denatured salmon sperm DNA, 400 ΐ DEPC water.
将切片从乙酰化溶液中捞出, 用滤纸吸干标本四周液体, 用在标本周围画一小圈。 加预杂交液 30ul在小圈内, 湿盒内 42°C温育 2小时。 甩去预杂交液, 用 25ul杂交液 覆盖 Parafilm膜, 湿盒内 42°C温育 16小时, 封闭湿盒。  Remove the section from the acetylation solution, blot the liquid around the specimen with filter paper, and draw a small circle around the specimen. Add 30ul of pre-hybridization solution in a small circle, and incubate at 42 ° C in a wet box for 2 hours. Shake off the prehybridization solution, cover the Parafilm membrane with 25ul of hybridization solution, and incubate in a wet box at 42 ° C for 16 hours. Close the wet box.
6.3.6杂交后处理 将玻片从温盒取出, 去掉 Parafilm膜。 2 X SSC室温冲洗三次, 每次 10分钟。 16.3.6 Post-hybridization Remove the slide from the thermostat and remove the Parafilm film. Rinse 2 X SSC three times at room temperature for 10 minutes each. 1
X SSC室温冲洗三次, 每次 10分钟。 0. 1 X SSC 50°C冲洗两次, 每次 15分钟。 X SSC was rinsed three times at room temperature for 10 minutes each. 0. 1 X SSC Rinse twice at 50 ° C for 15 minutes each.
若本底过高, 将玻片置于含 20 w g/ml RNA酶的溶液(0. 5 mol/L Nacl , 10mmol/L Tris- Cl, pH8. 0)中, 37°C消化 30分钟。 再用不含 RNA酶的上述溶液于 37°C冲洗 30分 钟, 洗膜。  If the background is too high, place the slides in a 20 w g / ml RNase solution (0.5 mol / L Nacl, 10 mmol / L Tris-Cl, pH 8.0) and digest at 37 ° C for 30 minutes. Then wash the solution with RNase-free solution at 37 ° C for 30 minutes, and wash the membrane.
6. 3. 7 显色反应  6. 3. 7 color reaction
玻片浸泡于清洗液(1M顺丁烯二酸, 0. 15M NaCl ; 0. 3% (V/V) Tween- 20)。在 100ml 封闭液 (试剂盒中的阻断剂按 10% (W/V) 加入顺丁烯二酸缓冲液 (0. lrnol/L 顺丁烯 二酸, 0. 15mol/L NaCl ), 使用时 1 : 10稀释) 中温育 30分钟。 加 20ml抗体溶液, 温 育 30分钟。 用 100ml清洗液洗两次, 每次 15分钟。 加 20ml 检测液 (0. 1M Tris- HC1 , 0. 1M NaCl , pH 9. 5 ) 平衡 2-5 分钟。 在 10ml 新配制的显色液 ( 10 ml 检测液中加 200ulNBT/BCIP) 中温育, 避光, 勿摇动。 用消毒双蒸水或 TE冲洗。  The slide was immersed in a washing solution (1M maleic acid, 0.15M NaCl; 0.3% (V / V) Tween-20). In 100ml blocking solution (blocking agent in the kit is added at 10% (W / V) maleic acid buffer solution (0.1 lrnol / L maleic acid, 0. 15mol / L NaCl), when using 1:10 dilution) and incubate for 30 minutes. Add 20 ml of antibody solution and incubate for 30 minutes. Wash twice with 100ml of washing solution for 15 minutes each. Add 20ml of detection solution (0.1M Tris-HC1, 0.1M NaCl, pH 9.5) and equilibrate for 2-5 minutes. Incubate in 10 ml of newly prepared coloring solution (200 ml of NBT / BCIP in 10 ml of detection solution), protect from light, and do not shake. Rinse with sterile double distilled water or TE.
结果: 在鼠大脑的神经胶质细胞的胞浆中呈阳性表达, 特别在脑卒中模型中呈阳 性表达, 这说明该基因不仅在进化中具有保守性, 而且对机体的重要脏器 (肝脏、 肾 脏和脑) 有重要的功能作用。 提示该基因可能与心脑血管细胞的炎性反应及肿瘤的分 化、 增殖有关。 实例七、 免疫组织化学分析  Results: It was positively expressed in the cytoplasm of rat glial cells, especially in the stroke model, which indicates that the gene is not only conservative in evolution, but also important to the body's important organs (liver, liver, Kidney and brain) have important functional roles. It is suggested that this gene may be related to the inflammatory response of cardiovascular and cerebrovascular cells and the differentiation and proliferation of tumors. Example 7: Immunohistochemical analysis
7. 1 人心肌梗塞并发症室壁瘤组织  7.1 Murine tumor tissue of myocardial infarction complications
7. 1. 1实验材料 7. 1. 1 Experimental materials
人心肌梗塞并发症室壁瘤组织。  Murine Tissue from Human Myocardial Infarction Complications
7. 1. 2免疫组织化学分析 7.1.2 Immunohistochemical analysis
用重组正确的原核表达(ptrxfus)质粒,从上清液中提取表达融合蛋白, 经 10%变 性聚丙烯酰胺电泳, 确定目的基因条带, Western 印迹鉴定目的蛋白后, 免疫动物所 获得的血清。  A recombinant correct prokaryotic expression (ptrxfus) plasmid was used to extract and express the fusion protein from the supernatant, and the target gene band was determined by 10% denaturing polyacrylamide electrophoresis. Western blot was used to identify the target protein and the serum obtained from the animals was immunized.
石蜡切片 5微米, 贴附于包被有多聚赖氨酸的 APES玻片上, 75Ό烤片 2小时。 二甲苯脱蜡后经梯度酒精后切片入水。 3% H202内 10 分钟。 蒸馏水洗三遍, 放入 EDTA 抗原修复液内 (pH8. 0), 置微波炉中烘烤 (96°C— 98°C ) 10分钟。 室温冷却 20— 30分 钟, 蒸馏水洗三遍。 入 1 X PBS缓冲液 5分钟。 10%正常兔血清 20分钟。 加适当稀释的 一抗, 4°C内孵育过夜。 lxPBS洗三次后, 加生物素标记的羊抗兔二抗, 室温 10分钟。 lxPBS洗三次, 加酶联链霉亲和素三抗, 室温 10分钟。 lxPBS洗三次, DAB显色。 蒸 馏水三次, 苏木素浅染胞核、 脱水、 封片。 Paraffin sections were 5 μm and attached to APES slides coated with polylysine, and baked at 75 ° C for 2 hours. After dewaxing xylene, it was sliced into water after gradient alcohol. 3% H 2 0 2 within 10 minutes. Wash three times with distilled water, put it into the EDTA antigen retrieval solution (pH 8. 0), and bake in a microwave oven (96 ° C-98 ° C) for 10 minutes. Cool at room temperature for 20-30 minutes and wash three times with distilled water. Add 1X PBS buffer for 5 minutes. 10% normal rabbit serum for 20 minutes. Add appropriately diluted primary antibody and incubate overnight at 4 ° C. After washing three times with lxPBS, add biotin-labeled goat anti-rabbit secondary antibody for 10 minutes at room temperature. Wash three times in lxPBS, add enzyme-linked streptavidin tertiary antibody, and let it stand at room temperature for 10 minutes. Wash three times with lxPBS and develop color with DAB. Distilled water three times, hematoxylin lightly stained nucleus, dehydrated, and mounted.
结果: 室壁瘤心肌高表达 FwaP10576基因。 Results: Fwa P 10576 gene was highly expressed in ventricular aneurysm.
7. 2脑卒中病人和非脑卒中病人的脑组织 7.2 Brain tissue of stroke patients and non-stroke patients
7. 2. 1组织来源: 脑卒中病人和非脑卒中病人的脑组织。 脑组织切片福尔马林浸泡 7天后, 脱水, 制成石蜡切片。 7. 2.1 Source of organization: Brain tissue in stroke patients and non-stroke patients. Brain tissue sections were soaked in formalin for 7 days, then dehydrated to make paraffin sections.
7.2.2免疫组织化学分析  7.2.2 Immunohistochemical analysis
参照 7.1.2免疫组织化学分析方法。 如图 8所示。 用 3株 Fwapl0576基因单克隆抗体 (McAb)为 I抗的免疫组化, A、 B、 C、 D 的 I抗为 Fwapl0576- SE3McAb, E的 I抗为 Fwapl0576- 6H10McAb, F 的 I抗为 Fwapl0576-6BllMcAb。 从图 B, D, E, F 中均可见到该基因在脑卒中病人的神经细胞核内 有明显的表达。 实施例八、 Fwapl0576基因的体外重组及蛋白表达  Refer to 7.1.2 immunohistochemical analysis method. As shown in Figure 8. Immunohistochemistry using 3 strains of Fwapl0576 gene monoclonal antibody (McAb) as the I antibody, the I antibodies for A, B, C, and D were Fwapl0576-SE3McAb, the I antibodies for E were Fwapl0576- 6H10McAb, and the F antibody was Fwapl0576- 6BllMcAb. From Figures B, D, E, and F, it can be seen that the gene is clearly expressed in the nucleus of nerve cells in patients with stroke. Example 8: Recombination and protein expression of Fwapl0576 gene in vitro
8.1构建重组载体  8.1 Constructing a Recombinant Vector
载体 pTrxFus (购自 Invitrogen公司)。 取 20ul pTrxFus载体, 10X缓冲液 4.0ul, l.Oul Xhol, l.Oul Smal, 14ul无菌水, 37°C酶切 16小时。 纯化酶切产物。  Vector pTrxFus (available from Invitrogen). Take 20ul pTrxFus vector, 10X buffer 4.0ul, l.Oul Xhol, l.Oul Smal, 14ul sterile water, and digest with 37 ° C for 16 hours. Purify the digested product.
PCR引物由上海生工生物公司合成, 聚丙烯酰氨凝胶电泳纯化、 0D2M=5)。 正向 引物: 5'CGG GAC CGG GAT TAC C 3' , 反向引物 5, ATG TCT AGA TCA TAG AGC ACG AA 3'。 PCR primers were synthesized by Shanghai Shenggong Biological Company, and purified by polyacrylamide gel electrophoresis, 0D 2M = 5). Forward primer: 5'CGG GAC CGG GAT TAC C 3 ', reverse primer 5, ATG TCT AGA TCA TAG AGC ACG AA 3'.
取 10 ul PCR纯化产物, 10X缓冲液 2.0ul, l.Oul Xhol, 7ul无菌水, 37°C酶 切 16小时。 纯化酶切产物。  Take 10 ul of the purified PCR product, 2.0ul of 10X buffer, l.Oul Xhol, 7ul of sterile water, and digest with 37 ° C for 16 hours. Purify the digested product.
8.1.2 连接  8.1.2 Connection
l.Oul pTrxFus 酶切产物, 3. Oul PCR 酶切产物, l.Oul 10X 缓冲液, l.Oul T4 连接酶, 4ul无菌水, 16Ό连接 6小时。  l.Oul pTrxFus digestion product, 3. Oul PCR digestion product, l.Oul 10X buffer solution, l.Oul T4 ligase, 4ul sterile water, 16 ligation for 6 hours.
8.1.3 转化  8.1.3 Conversion
取上述连接产物 5ul, 加入 lOOul GI724感受态细胞。 混匀, 置于冰上 30分钟。 42°C60秒, 冰上 2分钟。 加入 800ul S0C培养基 37°C摇菌 (小于 225RPM) 45分钟。 取 lOOul涂于含 Amp (氨卞青霉素)抗性的 LB平板上。 30°C培养 16小时。 挑单克隆置于 5ml含 50ug Amp的 LB培养基中 37°C摇 16小时。  Take 5ul of the above ligation product and add 100ul of GI724 competent cells. Mix well and place on ice for 30 minutes. 60 seconds at 42 ° C, 2 minutes on ice. Add 800ul S0C medium and shake at 37 ° C (less than 225RPM) for 45 minutes. 100 μl was applied to LB plates containing Amp (ampicillin) resistance. Incubate at 30 ° C for 16 hours. Pick single clones and place them in 5ml LB medium containing 50ug Amp and shake at 37 ° C for 16 hours.
8.1.4 质粒提取  8.1.4 Plasmid extraction
挑取单克隆菌落接种 5ml RM-Amp培养基 (含有氨苄青霉素的丰富培养基,组分为 6gN HP04(无水),3gKH2PO4,,0.5gNaCl,lgNH4Cl,20g Casamino Acids (酸水解酪素) , 0.095gMgCl2) ,30°C 摇(220_250rpm)过夜。 Pick out monoclonal colonies and inoculate 5ml RM-Amp medium (rich medium containing ampicillin, consisting of 6gN HP0 4 (anhydrous), 3gKH 2 PO 4 , 0.5gNaCl, lgNH 4 Cl, 20g Casamino Acids (acid casamino), 0.095gMgCl 2), 30 ° C shaking (220_250rpm) overnight.
取菌液, 2, 000RPM离心 10分钟, 弃上清。沉淀中加预冷的溶液 I (25mM Tris-HCl, pH8.0, 2. OmM EDTA, 50mM glucose) 140ul, 悬浮细菌。 用 280ul新配制的溶液 II (0.2M NaOH, 1% SDS)裂解细菌。 再加入 450ul预冷的溶液 ΠΙ(4· OM Potassium acatate) , 混匀。 离心 4, 000 RPM 10分钟, 12,000 RPM 10分钟。 取上清, 加入 0.6倍体积的 异丙醇, 同上离心。 用勤 ul TE (lOmM Tris-HCl, 0. Im EDTA, pH8.0) 和 20ug/ml的 RNA酶溶解沉淀, 37°C30分钟。 加 600ul醋酸铵 /乙醇 (1: 5), - 70°C放置 30分钟。 离心后用 75%乙醇洗涤。 用 TE lOOul溶解提取的质粒, 测 OD260/280定量。 Take the bacterial solution, centrifuge at 2,000 RPM for 10 minutes, and discard the supernatant. Pre-cooled solution I (25mM Tris-HCl, pH8.0, 2. OmM EDTA, 50mM glucose) 140ul was added to the pellet, and the bacteria were suspended. Bacteria were lysed with 280ul of freshly prepared solution II (0.2M NaOH, 1% SDS). Add 450ul of pre-chilled solution (II · OM Potassium acatate) and mix. Centrifuge at 4,000 RPM for 10 minutes and 12,000 RPM for 10 minutes. Take the supernatant and add 0.6 times the volume of Isopropanol, centrifuged as above. Dissolve the pellet with ul TE (10 mM Tris-HCl, 0.1 Im EDTA, pH 8.0) and 20 ug / ml RNase, 37 ° C for 30 minutes. Add 600ul of ammonium acetate / ethanol (1: 5) and leave at -70 ° C for 30 minutes. After centrifugation, it was washed with 75% ethanol. TE 100ul was used to dissolve the extracted plasmid, and the OD260 / 280 was measured.
8.1.5 挑选阳性克隆 8.1.5 Selecting positive clones
用 PCR的方法鉴定阳性克隆。  Positive clones were identified by PCR.
8.1.6序列测定  8.1.6 Sequence determination
对限制性内切酶切割及 PCR 鉴定为阳性的克隆进行测序。 引物由上海生工生物公 司合成,聚丙烯酰氨凝胶电泳纯化、
Figure imgf000024_0001
pTRXFUS正向测序引物: 5' -TTC CTC GAC GCT AAC CTG-3', pTRXFUS反向测序引物: 5' - TGT AAA ACG ACG GCC AGT GC- 3'。 引物的终 浓度为 5uM。
Sequencing clones that were positive for restriction enzyme cleavage and PCR. The primers were synthesized by Shanghai Shenggong Biological Company, purified by polyacrylamide gel electrophoresis,
Figure imgf000024_0001
pTRXFUS forward sequencing primer: 5 '-TTC CTC GAC GCT AAC CTG-3', pTRXFUS reverse sequencing primer: 5 '-TGT AAA ACG ACG GCC AGT GC-3'. The final primer concentration was 5 uM.
将测序鉴定为阳性的克隆 (PTrxSX576) 保存在 15%甘油中, _20C存放。 The clones identified as positive by sequencing ( P TrxSX576) were stored in 15% glycerol and stored at _20C.
8.2 重组蛋白的诱导表达 8.2 Induced expression of recombinant proteins
接种 50ul菌液 (PTrxSX576) 于 5ml RM-Amp培养基中, 30°C 摇 (220-250rpm) 过夜。取 250ul过夜菌接种 5ml IM诱导培养基(6g无水 N HP04, 3gKH2PO4.0.5gNaCl, lg NH4C1, 2g酸水解酪素, 0.095g MgCl2) , 30°C摇 (220-250rpm) 3小时, 取出, 测 量 0D550约为 0.5。 加 900ml去离子水溶解, 加水使终体积为 1升, 高压 20分钟 (15 psi, 121°C), 冷却到室温, 力口 lml lOOmg/ml ampicillin, 25ml20%无菌葡萄糖, 20°C- 25。C调 节 pH=7.0±0.2, +4°C保存。 加色氨酸 (Trp) 至终浓度为 lOOug/ml, 37。C摇 (220- 250rpm) 4小时, 加 lOmg/ml色氨酸 (Trp), 加热 500ml玻璃蒸馏水至 80°C, 加入 5g L- 色氨酸, 搅拌至完全溶解, 用 0.45Um滤膜过滤溶液除菌, 于 4°C避光最多保存 6个月; 取出菌液, 测量 0D550; 4300 g离心收获菌体,立即超声释放蛋白或 -20°C保存。 Inoculate 50ul of bacterial solution ( P TrxSX576) in 5ml RM-Amp medium, shake (220-250rpm) at 30 ° C overnight. Take 250ul of overnight bacteria and inoculate 5ml IM induction medium (6g anhydrous N HP0 4 , 3g KH 2 PO 4 .0.5gNaCl, lg NH 4 C1, 2g acid hydrolyzed casein, 0.095g MgCl 2 ), shake at 30 ° C (220- 250 rpm) for 3 hours, take it out, and measure 0D550 to about 0.5. Add 900ml deionized water to dissolve, add water to make the final volume 1 liter, high pressure for 20 minutes (15 psi, 121 ° C), cool to room temperature, lml 100mg / ml ampicillin, 25ml 20% sterile glucose, 20 ° C-25 . C adjust pH = 7.0 ± 0.2, store at + 4 ° C. Add tryptophan (Trp) to a final concentration of 100 ug / ml, 37. C shake (220-250rpm) for 4 hours, add 10mg / ml tryptophan (Trp), heat 500ml glass distilled water to 80 ° C, add 5g L-tryptophan, stir until completely dissolved, filter solution with 0.45 Um filter membrane Sterilize and store at 4 ° C in the dark for a maximum of 6 months. Remove the bacterial solution and measure 0D550. Centrifuge at 4300 g to harvest the bacterial cells and immediately release the protein by ultrasound or store at -20 ° C.
8.3 超声释放融合蛋白 8.3 Ultrasound release of fusion protein
诱导表达融合蛋白, +4°C, 4300 g离心 10分钟, 弃去上清, 保留沉淀。 用溶液 II (20mMTris-HCl, pH 8, 2.5mM EDTA) 重悬菌体, 使其 OD550为 100, 放置于冰上。 菌液放在冰上, 3X10秒脉冲, 立即放到液氮中速冻, 然后迅速放到 37°C水浴中速溶; 重复两次; 4°C, 4300 g离心 10分钟, 上清转移到新管中, 冰上保存。  Induced expression of the fusion protein, centrifuged at 4300 g at + 4 ° C for 10 minutes, discarded the supernatant, and retained the pellet. The cells were resuspended in solution II (20 mM Tris-HCl, pH 8, 2.5 mM EDTA) to an OD550 of 100, and placed on ice. The bacterial solution was placed on ice, pulsed for 3X10 seconds, immediately frozen in liquid nitrogen, and then quickly dissolved in a 37 ° C water bath. Repeat twice; centrifuge at 4 ° C, 4300 g for 10 minutes, and transfer the supernatant to a new tube. Medium, save on ice.
8.4 聚丙烯酰氨凝胶电泳及蛋白质免疫印迹 8.4 Polyacrylamide Gel Electrophoresis and Western Blotting
8.4.1 聚丙烯酰氨凝胶电泳 8.4.1 Polyacrylamide gel electrophoresis
取 20ul 超声释放的融合蛋白溶液加适量的蛋白载样缓冲液,沸水浴中煮沸 5 分 钟, 5000rpm离心 5分钟,取 20ul上清上样. 60V恒压进浓缩胶(5%), 120V恒压进 15% 分离胶; 卸胶,考马斯亮兰染色 1-2小时,脱色分析结果。  Take 20ul of ultrasonically released fusion protein solution and add an appropriate amount of protein loading buffer, boil in a boiling water bath for 5 minutes, centrifuge at 5000rpm for 5 minutes, and take 20ul of the supernatant to load. 60V constant pressure into concentrated gel (5%), 120V constant pressure Into 15% separation gel; unload the gel, Coomassie bright blue staining 1-2 hours, decolorization analysis results.
8.4.2 蛋白质免疫印迹 8.4.2 Western Blot
半干系统 (Bio-Rad产品) 转膜 1小时, 转移缓冲液: (参见 《精编分子生物学实 验指南》)。取下硝酸纤维素膜, 10ml封闭液(20mM Tris-Cl, 500mM NaCl,pH=7.5, 3% BSA), 室温, 摇动 1 个小时。 20mlTBST ( 20mM Tris-Cl , 500mM NaCl , pH=7.5 , 0.05% Tween-20(w/v) ) 洗膜 5分钟, 室温轻轻摇动.重复一次。 将膜转移到 1:20, 000稀释的 一抗缓冲液中, 室温, 浸润 1-2个小时。 20mlTBST室温洗膜 5分钟.重复 1次; 在 10ml 1:5000稀释的二抗缓冲液中室温浸润 1小时; 20ml TBST室温洗膜 2次,每次 5分钟; 20ml TBS室温洗膜 2 次,每次 5分钟; 准备新鲜的底物溶液: 66ul NBT (nitro- blue tetrazolium,氮蓝四唑, Promega) +10ml 碱性磷酸酶缓冲液 (lOOmM Tris-Cl, lOOmM NaCl , 5mM MgCl2, pH=9.5 ) 混匀,再加 33ul BCIP .( 5-bromo- 4- chloro-3- indolyl- pHospHate, 5-溴- 4-氯- 3-吲哚-磷酸, Promega) ,混匀(1 小时内使用)备用; 20ml 碱性 磷酸酶缓冲液室温洗膜 2 次, 每次 5分钟; 10ml 底物溶液,室温轻轻摇动显色.10-30 分钟; 终止显色: 20ml高压水 5分钟。 Semi-dry system (Bio-Rad product) Transfer membrane for 1 hour, transfer buffer: (see "Experimental Guide for Fine-Grade Molecular Biology"). Remove the nitrocellulose membrane, 10 ml of blocking solution (20 mM Tris-Cl, 500 mM NaCl, pH = 7.5, 3% BSA), and shake at room temperature for 1 hour. 20mlTBST (20mM Tris-Cl, 500mM NaCl, pH = 7.5, 0.05% Tween-20 (w / v)) Wash the membrane for 5 minutes, and shake gently at room temperature. Repeat once. Transfer the membrane to 1: 20,000 diluted primary antibody buffer and incubate at room temperature for 1-2 hours. Wash the membrane with 20ml TBST for 5 minutes at room temperature. Repeat 1 time; infiltrate for 1 hour at room temperature in 10ml 1: 5000 diluted secondary antibody buffer; wash the membrane with 20ml TBST twice at room temperature for 5 minutes each; times for 5 min; prepare fresh substrate solution: 66ul NBT (nitro- blue tetrazolium, tetrazolium, Promega) + 10ml of alkaline phosphatase buffer (lOOmM Tris-Cl, lOOmM NaCl , 5mM MgCl 2, pH = 9.5 ) Mix and add 33ul BCIP. (5-bromo- 4- chloro-3- indolyl- pHospHate, 5-bromo- 4-chloro- 3-indole-phosphate, Promega) and mix (use within 1 hour) Reserve; 20ml alkaline phosphatase buffer was washed twice at room temperature for 5 minutes each time; 10ml substrate solution was gently shaken at room temperature for 10-30 minutes; color development was stopped: 20ml high pressure water for 5 minutes.
8.5 重组蛋白 TRXSX576表达条件的优化 8.5 Optimization of Expression Conditions for Recombinant Protein TRXSX576
8.5.1不同活化时间重组蛋白 TRXSX576表达量的变化  8.5.1 Changes in the expression of recombinant protein TRXSX576 at different activation times
TRXSX576表达菌株 30°C 220-250rpm分别活化 1小时, 2小时, 3小时, 4小时, 5小 时, 6小时,然后加色氨酸至终浓度为 100ug/ml, 37 X摇( 220- 250rpra)诱导 4小时, 聚 丙烯酰氨凝胶电泳检测重组蛋白表达量的变化, 结果图 5A所示。  TRXSX576-expressing strains were activated at 220-250 rpm at 30 ° C for 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, and 6 hours, respectively, and then tryptophan was added to a final concentration of 100 ug / ml. After 4 hours of induction, the expression of recombinant protein was detected by polyacrylamide gel electrophoresis. The results are shown in FIG. 5A.
8.5.2 不同诱导时间重组蛋白 TRXSX576表达量的变化 8.5.2 Changes in the expression of recombinant protein TRXSX576 at different induction times
据上选取最佳活化时间活化 TRXSX576 表达菌株,然后加色氨酸至终浓度为 100ug/ml, 37。C 220- 250rpm诱导 0小时, 1小时, 2小时, 3小时, 4小时, 5小时, 6小时, 聚丙烯酰氨凝胶电泳检测重组蛋白 TRXSX576表达量的变化。 结果如图 5B所示。  Based on the above, the optimal activation time was used to activate the TRXSX576 expressing strain, and then tryptophan was added to a final concentration of 100ug / ml, 37. C 220-250rpm induced 0 hours, 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours. Polyacrylamide gel electrophoresis was used to detect the expression of recombinant protein TRXSX576. The results are shown in Figure 5B.
8.6亲和层析纯化融合蛋白 TRXSX576 8.6 Purification of Fusion Protein TRXSX576 by Affinity Chromatography
释放融合蛋白: 在最佳活化时间和诱导时间下,表达融合蛋白,超声释放,测 Fusion protein release: Under the optimal activation time and induction time, express the fusion protein, release it by ultrasound, measure
0D280, 粗算蛋白浓度。 0D280, rough calculation of protein concentration.
平衡树脂: 取 2ml Resin (加乙醇共 ½1) 自然沉淀, 弃去乙醇; 用 4— 8ml RB (20mM βΜΕ, β巯基乙醇)重悬, 静置使其自然沉积, 小心弃去缓冲液; 加 4一 8ml RB (20mM 重悬, 室温轻轻摇动 30- 60分钟, 小心弃去上清; 用 4一 8ml RB (没有 β ME)重悬, 静置使其自然沉积, 小心弃去缓冲液; 重复上述步骤。  Equilibrium resin: take 2ml Resin (total ethanol plus ½1) for natural precipitation, discard ethanol; resuspend with 4-8ml RB (20mM βΜΕ, βmercaptoethanol), leave it to settle naturally, discard the buffer carefully; add 4 8ml RB (20mM resuspended, gently shake at room temperature for 30-60 minutes, carefully discard the supernatant; resuspend with 4-8ml RB (without β ME), leave it to settle naturally, discard the buffer carefully; repeat The above steps.
填柱: 向柱中加 2ml RB; 以 RB重悬 Resin, 小心加到柱中; 待 Resin自然沉积, 打 开控制阀使缓冲液以约 1滴 /7秒的速度流下。  Pack the column: Add 2ml of RB to the column; resuspend Resin with RB, carefully add to the column; wait for Resin to deposit naturally, open the control valve and let the buffer flow down at a rate of about 1 drop / 7 seconds.
纯化: 加样: 约 2ml 融合蛋白溶液, 以 2ml/12X75试管收集, 每管取 5ul稀释 到 500ul测 0D280, 洗柱: 8ml RB(lmMPME), 简称 ΙηιΜβΜΕ, 洗脱: 分别以 6ml 5πιΜβ ME, ΙΟπιΜβΜΕ, 50mM β ME, ΙΟΟπιΜβΜΕ, 200mM β ME, 500mM β ME, ΙΟΟΟηιΜβΜΕ洗脱。 大 多数情况下目的蛋白在 10— 200 mMPME之间洗脱下来。  Purification: Loading: Approximately 2ml of fusion protein solution, collected in 2ml / 12X75 test tubes, dilute 5ul to 500ul to measure 0D280, wash the column: 8ml RB (lmMPME), abbreviated ΙηΜβΜΕ, elution: 6ml 5πιΜβ ME, ΙΟπιΜβΜΕ , 50 mM β ME, 100 μM βΜΕ, 200 mM β ME, 500 mM β ME, 100 μM βΜΕ. In most cases, the target protein is eluted between 10-200 mMPME.
聚丙烯酰氨凝胶电泳鉴定: 每管取 20ul 聚丙烯酰氨凝胶电泳鉴定 (方法同上)。 8.7融合蛋白的透析与浓缩  Polyacrylamide gel electrophoresis identification: Take 20ul of polyacrylamide gel electrophoresis to identify each tube (the method is the same as above). 8.7 Dialysis and Concentration of Fusion Proteins
lXEK(enterokinase,肠激酶)缓冲液, +4°C, 磁力搅拌透析, 4 小时换一次透析 液,至少换 4次透析液; 用 PEG浓缩至 lml, 4°C保存。 实施例九、 高表达 Fwapl0576诱发细胞增殖 lXEK (enterokinase, enterokinase) buffer, + 4 ° C, dialysis with magnetic stirring, change the dialysate once every 4 hours, change the dialysate at least 4 times; concentrate with PEG to 1ml, and store at 4 ° C. Example IX: High expression of Fwapl0576 induces cell proliferation
9. 1表达载体的构建 9.1 Construction of expression vectors
利用分子克隆技术并参照前述实施例的方法分别构建了 pCDNA-Fwapl0576的正义、 pcDNA-Fwapl0576的反义核酸重组表达载体。 PcDNA3. IB载体购自 CL0NTECH公司。 9. 2获得稳定表达的克隆株 Antisense recombinant expression vectors of p C DNA-Fwapl0576 sense and pcDNA-Fwapl0576 were constructed using molecular cloning technology and with reference to the methods of the previous examples. PcDNA3. IB vector was purchased from CLONTECH. 9.2 Obtaining stable expression clones
选用 CL0NTECH 公司的 Lipfectintm试剂盒。 取 lul DNA质粒和 lug脂质体, 转染 人肺癌 A549细胞 (购自医学科学院基础所细胞中心),转染后 24小时加 G418(20(^g/ml ) 选择培养, 2周后筛选到稳定表达的细胞株。  Select Lipfectintm kit from CL0NTECH. Take lul DNA plasmid and lug liposomes to transfect human lung cancer A549 cells (purchased from the Cell Center of the Institute of Basic Medical Sciences). G418 (20 (^ g / ml)) was selected and cultured 24 hours after transfection. Stably expressed cell line.
9. 3用细胞计数和 MTT染色法观察细胞的生物学效应 9.3 Observing the biological effects of cells by cell counting and MTT staining
9. 3. 1胰蛋白酶消化方法: 9. 3. 1 Trypsin digestion method:
倒掉细胞培养液, 用 1XPBS 洗细胞 2次 (0. 5ml /cm2培养.皿), 加入含 0. 125%胰蛋 白酶的 1XPBS消化细胞 5分钟, 反复用吸管吹打, 混匀。 然后用血球计数板计数。 9. 3. 2细胞计数: Discard the cell culture solution, wash the cells twice with 1XPBS (0.5 ml / cm 2 culture dish), add 1XPBS containing 0.125% trypsin to digest the cells for 5 minutes, and repeatedly pipette with a pipette to mix. It was then counted with a hemocytometer. 9. 3.2 Cell count:
将细胞滴入血球计数板内,放置在光学显微镜 (Nikon日本)上数细胞,细胞数的计算 公式为:细胞数的计算公式为:  The cells are dropped into a blood cell counting plate and placed on an optical microscope (Nikon Japan) to count the cells. The calculation formula of the cell number is: The calculation formula of the cell number is:
细胞数 /毫升 = 4大格细胞数 /4 X 10, 000 X稀释倍数  Cells / ml = 4 large cells / 4 X 10,000 X dilution
结果: Results:
从图 9可见, pcDNA3. l-pl0576正义载体刺激细胞的增生, 而其反义载体则明显抑 制细胞的增生。 MTT活细胞染色的结果与细胞计数相同。  It can be seen from FIG. 9 that the pcDNA3.1-pl0576 sense vector stimulates cell proliferation, while its antisense vector significantly inhibits cell proliferation. The results of MTT live cell staining were the same as the cell count.
本发明并不限于上述具体的实施例, 实施例仅用于说明本发明的某些方面。 功能 上等同的方法和物质已包括在本发明的范围内。 事实上, 根据本文的描述和附图, 基 于本发明的各种改变对本领域的技术人员而言是显而易见的。 这样的改变己包括在本 发明权利要求的范围内。  The present invention is not limited to the specific embodiments described above, and the embodiments are only used to illustrate certain aspects of the present invention. Functionally equivalent methods and materials are included within the scope of this invention. In fact, various changes based on the invention will be apparent to those skilled in the art from the description herein and the accompanying drawings. Such changes are included in the scope of the claims of the present invention.

Claims

权利要求书 Claim
1. 一种分离的多核苷酸, 它包括选自下列组中的一个成员: 1. An isolated polynucleotide comprising a member selected from the group consisting of:
(a) 一种多核苷酸, 其编码如 SEQ ID N0: 2所示的多肽;  (a) a polynucleotide encoding a polypeptide as shown in SEQ ID NO: 2;
(b) 一种多核苷酸, 其是 (a)天然存在的多核苷酸变异体;  (b) a polynucleotide, which is (a) a naturally occurring polynucleotide variant;
(c) 一种多核苷酸, 其能够与(a)杂交, 并且与 (a)具有至少 85%的同源性。  (c) A polynucleotide capable of hybridizing to (a) and having at least 85% homology with (a).
2. 权利要求 1的多核苷酸, 其中所说的多核苷酸是 DNA。  2. The polynucleotide of claim 1, wherein said polynucleotide is DNA.
3. 权利要求 1的多核苷酸, 其中所说的多核苷酸是 RNA。  3. The polynucleotide of claim 1, wherein said polynucleotide is RNA.
4. 权利要求 1的多核苷酸, 其中所说的多核苷酸是基因组 DNA。  4. The polynucleotide of claim 1, wherein said polynucleotide is genomic DNA.
5. 权利要求 1的多核苷酸, 所说的多核苷酸具有如 SEQ ID NO : 1所示的序列。 5. The polynucleotide of claim 1, said polynucleotide having a sequence as shown in SEQ ID NO: 1.
6. 权利要求 1的多核苷酸, 所说的多核苷酸包含如 SEQ ID NO: 1所示的从 213至 683位核苷酸。 6. The polynucleotide of claim 1, said polynucleotide comprising nucleotides 213 to 683 as shown in SEQ ID NO: 1.
7. 权利要求 2的多核苷酸, 其编码如 SEQ ID NO: 2所示的多肽。  7. The polynucleotide of claim 2, which encodes a polypeptide as set forth in SEQ ID NO: 2.
8. 一种载体, 所说的载体包含权利要求 2的 DNA。  A vector comprising the DNA of claim 2.
9. 一种宿主细胞, 所说的宿主细胞由权利要求 8的载体转化或者转染过。  9. A host cell, said host cell being transformed or transfected with a vector according to claim 8.
10. 一种产生多肽的方法, 所说的方法包括在权利要求 9的宿主细胞中表达由所述 DNA编码的多肽。  10. A method for producing a polypeptide, said method comprising expressing a polypeptide encoded by said DNA in a host cell according to claim 9.
11. 一种多肽, 它包含选自下列组中的一个成员:  11. A polypeptide comprising a member selected from the group consisting of:
(a)—种多肽, 其具有推定的如 SEQ ID N0: 2所示的氨基酸序列;  (a) a polypeptide having a deduced amino acid sequence as shown in SEQ ID NO: 2;
(b)—种多肽, 其是 (a)的活性片段、 类似物或衍生物;  (b) a polypeptide which is an active fragment, analog or derivative of (a);
(c)—种多肽, 其与 SEQ ID N0 : 2所示的氨基酸序列具有至少 85%的同源性。  (c) a polypeptide having at least 85% homology with the amino acid sequence shown in SEQ ID NO: 2.
12. 一种权利要求 11之多肽的抗体。  12. An antibody to the polypeptide of claim 11.
13. 一种化合物, 所说的化合物抑制权利要求 11之多肽的激活。  13. A compound which inhibits the activation of the polypeptide of claim 11.
14.一种药物组合物, 所说的药物组合物包含有效量的权利要求 11的多肽或其活性 片段, 以及一种或多种药学上可接受的载体或赋形剂。  A pharmaceutical composition, said pharmaceutical composition comprising an effective amount of the polypeptide of claim 11 or an active fragment thereof, and one or more pharmaceutically acceptable carriers or excipients.
15. 权利要求 11的多肽在制备治疗心脑血管疾病的药物组合物中的用途。  15. Use of the polypeptide of claim 11 in the preparation of a pharmaceutical composition for the treatment of cardiovascular and cerebrovascular diseases.
16. 一种治疗需要 Fwapl0576之患者的方法, 所说的方法包括: 对患者施用治疗有 效量的权利要求 11的多肽。  16. A method of treating a patient in need of Fwapl0576, said method comprising: administering to the patient a therapeutically effective amount of the polypeptide of claim 11.
17. 权利要求 16 的方法, 所说的方法包括: 向患者提供编码所述多肽的 DNA, 并 在患者体内表达所述的多肽。  17. The method of claim 16, said method comprising: providing a patient with DNA encoding said polypeptide, and expressing said polypeptide in the patient.
18. 一种诊断疾病或者对疾病的易感性的方法, 所说的方法包括: 测定权利要求 1 的多核苷酸中的突变。  18. A method for diagnosing or susceptibility to a disease, said method comprising: determining a mutation in a polynucleotide of claim 1.
19. 一种诊断方法, 所说的方法包括: 分析来源于宿主细胞的样品及自身抗体中是 否存在权利要求 11的多肽。  19. A diagnostic method, said method comprising: analyzing whether a polypeptide according to claim 11 is present in a sample derived from a host cell and an autoantibody.
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CN1326973A (en) * 2000-06-07 2001-12-19 上海博德基因开发有限公司 New polypeptide-human layer adherent protein gamma 3 link (LAMC3) 69.85 and polynucleotide for encoding such polypeptide

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CN110050070A (en) * 2016-12-22 2019-07-23 文塔纳医疗系统公司 Full-automatic method for extracting nucleic acid for tissue sample
CN110050070B (en) * 2016-12-22 2023-12-22 文塔纳医疗系统公司 Full-automatic nucleic acid extraction method for tissue samples

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