F IMIDAZOLYL CYCLIC ACETAL DERIVATIVES IN THE MANUFACTURE OF A MEDICAMENT THE TREATMENT OF DISEASES MEDIATED BY THE AL 5 RECEPTORS
This invention relates to the use of imidazolyl-cyclic acetals as inhibitors of the transforming growth factor, ("TGF")-β signaling pathway, in particular, the phosphorylation of smad2 or smad3 by the type I or activin-like kinase ("ALK")-5 receptor.
TGF-βl is the prototypic member of a family of cytokmes including the TGF-βs, activins, inhibins, bone morphogenetic proteins and Mullerian-inhibiting substance, that signal through a family of single transmembrane serine/threonine kinase receptors. These receptors can be divided in two classes, the type I or activin like kinase (ALK) receptors and type II receptors. The ALK receptors are distinguished from the type JJ receptors in that the ALK receptors (a) lack the serine/threonine rich intracellular tail, (b) possess serine/threonine kinase domains that are very homologous between type I receptors, and (c) share a common sequence motif called the GS domain, consisting of a region rich in glycine and serine residues. The GS domain is at the amino terminal end of the intracellular kinase domain and is critical for activation by the type II receptor. Several studies have shown that TGF-β signaling requires both the ALK and type π receptors. Specifically, the type II receptor phosphorylates the GS domain of the type I receptor for TGF-β, ALK5, in the presence of TGF-β. The ALK5, in turn, phosphorylates the cytoplasmic proteins smad2 and smad3 at two carboxy terminal serines. The phosphorylated smad proteins translocate into the nucleus and activate genes that contribute to the production of extracellular matrix. Therefore, preferred compounds of this invention are selective in that they inhibit the type I receptor and thus matrix production.
Activation of the TGF-βl axis and expansion of extracellular matrix are early and persistent contributors to the development and progression of chronic renal disease and vascular disease. Border W.A., et al, N. Engl. J. Med., 1994; 331(19), 1286-92. Further, TGF-βl plays a role in the formation of fibronectin and plasminogen activator inhibitor- 1, components of sclerotic deposits, through the action of smad3 phosphorylation by the TGF-βl receptor ALK5. Zhang Y., et al, Nature, 1998; 394(6696), 909-13; Usui T., et al, Invest. Ophthalmol. Vis. Sci., 1998; 39(11), 1981-9.
Progressive f brosis in the kidney and cardiovascular system is a major cause of suffering and death and an important contributor to the cost of health care. TGF-βl has been implicated in many renal fibrotic disorders. Border W.A., et al, N. Engl. J. Med., 1994; 331(19), 1286-92. TGF-βl is elevated in acute and chronic glomerulonephritis Yoshioka K., et al, Lab. Invest., 1993; 68(2), 154-63, diabetic nephropathy Yamamoto, T., et al, 1993, PNAS 90, 1814-1818., allograft rejection, HIV nephropathy and angiotensin-induced nephropathy Border W.A., et al, N. Engl. J. Med., 1994; 331(19), 1286-92. In these diseases the levels of TGF-βl expression coincide with the production of extracellular matrix. Three lines of evidence suggest a causal relationship between TGF-βl and the production of matrix. First, normal glomeruli, mesangial cells and non-renal cells can be induced to produce extracellular-matrix protein and inhibit protease activity by exogenous TGF-βl in vitro. Second, neutralizing anti-bodies against TGF- βl can prevent the accumulation of extracellular matrix in nephritic rats. Third, TGF-βl transgenic mice or in vivo transfection of the TGF-βl gene into normal rat kidneys resulted in the rapid development of glomerulosclerosis. Kopp J.B., et al, Lab. Invest., 1996; 74(6), 991-1003.
Thus, inhibition of TGF-βl activity is indicated as a therapeutic intervention in chronic renal disease.
TGF-βl and its receptors are increased in injured blood vessels and are indicated in neointima formation following balloon angioplasty Saltis J., et al, Clin. Exp. Pharmacol. Physiol., 1996; 23(3), 193-200. In addition TGF-βl is a potent stimulator of smooth muscle cell ("SMC") migration in vitro and migration of SMC in the arterial wall is a contributing factor in the pathogenesis of atherosclerosis and restenosis. Moreover, in multivariate analysis of the endothelial cell products against total cholesterol, TGF-β receptor ALK5 correlated with total cholesterol (P < 0.001) Blann A.D., et al, Atherosclerosis, 1996; 120(1-2), 221-6. Furthermore, SMC derived from human atherosclerotic lesions have an increased ALK5/TGF-β type JJ receptor ratio. Because TGF-βl is over-expressed in fibroproliferative vascular lesions, receptor- variant cells would be allowed to grow in a slow, but uncontrolled fashion, while overproducing extracellular matrix components McCaffrey T.A., et al, Jr., J. Clin. Invest, 1995; 96(6), 2667-75. TGF-βl was immunolocalized to non-foamy macrophages in atherosclerotic lesions where active matrix synthesis occurs, suggesting that non-foamy macrophages may participate in modulating matrix gene expression in atherosclerotic remodeling via a TGF-β-dependent mechanism. Therefore, inhibiting the action of TGF-βl on ALK5 is also indicated in atherosclerosis and restenosis.
TGF-β is also indicated in wound repair. Neutralizing antibodies to TGF-βl have been used in a number of models to illustrate that inhibition of TGF-βl signaling is beneficial in restoring function after injury by limiting excessive scar formation during the healing process. For example, neutralizing antibodies to TGF-βl and TGF-β2 reduced scar formation and improved the cytoarchitecture of the neodermis by reducing the number of monocytes and macrophages as well as decreasing dermal fibronectin and collagen deposition in rats Shah M., J. Cell. Set, 1995, 108, 985-1002. Moreover, TGF-β antibodies also improve healing of coraeal wounds in rabbits Moller-Pedersen T., Curr. Eye Res., 1998, 17, 736-747, and accelerate wound healing of gastric ulcers in the rat, Ernst H., Gut, 1996, 39, 172-175. These data strongly suggest that limiting the activity of TGF-β would be beneficial in many tissues and suggest that any disease with chronic elevation of TGF-β would benefit by inhibiting smad2 and smad3 signaling pathways.
TGF-β is also implicated in peritoneal adhesions Saed G.M., et al, Wound Repair Regeneration, 1999 Nov-Dec, 7(6), 504-510. Therefore, inhibitors of ALK5 would be beneficial in preventing peritoneal and sub-dermal fibrotic adhesions following surgical procedures.
TGFβl -antibodies prevent transplanted renal tumor growth in nude mice through what is thought to be an anti-angiogenic mechanism Ananth S, et al, Journal Of The American Society Of Nephrology Abstracts, 9: 433 A( Abstract). While the tumor itself is not responsive to TGF-β, the surrounding tissue is responsive and supports tumor growth by neovascularization of the TGF-β secreting tumor. Thus, antagonism of the TGF-β pathway should prevent metastasis growth and reduce cancer burden. WO 98/56788 discloses imidazolyl-cyclic acetals as inhibitors of tumor necrosis factor
(TNF) and their use in e.g. the treatment of asthma and joint inflammation.
Surprisingly, it has now been discovered that the imidazolyl-cyclic acetals disclosed in WO 98/56788 function as potent and selective non-peptide inhibitors of ALK5 kinase and
therefore, have utility in the treatment and prevention of various disease states mediated by ALK5 kinase mechanisms, such as chronic renal disease, acute renal disease, wound healing, arthritis, osteoporosis, kidney disease, congestive heart failure, ulcers, ocular disorders, corneal wounds, diabetic nephropathy, impaired neurological function, Alzheimer's disease, atherosclerosis, peritoneal and sub-dermal adhesion, any disease wherein fibrosis is a major component, including, but not limited to lung fibrosis and liver fibrosis, and restenosis.
According to the invention there is provided a method of treatment of a disease mediated by the ALK5 receptor in mammals, comprising administering to a mammal in need of such treatment, a therapeutically effective amount of an imidazolyl-cyclic acetal as disclosed in WO 98/56788.
The invention also provides the use of an imidazolyl-cyclic acetal as disclosed in W098/56788 in therapy.
The invention further provides the use of an imidazolyl-cyclic acetal as disclosed in WO 98/56788, in the manufacture of a medicament for the treatment of a disease mediated by the ALK5 receptor in mammals.
The present invention includes the use of all those compounds generically disclosed by WO 98/56788 as well as those compounds that are specifically exemplified.
Particular group of compounds which may be mentioned for use in the method of the invention included those compounds wherein: i) the 5-position of the imidazolyl is substituted by 6-methylpyridin-2-yl; and/or ii) the 4-position of the imidazolyl is substituted by phenyl optionally substituted by halo, or phenyl fused with a 5- to 7-membered aromatic or non-aromatic ring wherein said ring contains up to three heteroatoms, independently selected from N, O and S, for example benzo[l,3]dioxolyl, 2,3-dihydrobenzo[l,4]dioxinyl, benzoxazolyl, benzothiazolyl, benzo[l,2,5]oxadiazolyl, benzo[l,2,5]thiadiazolyl or dihydrobenzofuranyl, or alternatively benzo[l,3]dioxolyl, 2,3-dihydrobenzo[l,4]dioxinyl, benzoxazolyl, benzothiazolyl, benzo[l,2,5]oxadiazolyl, benzo[l,2,5]thiadiazolyl, dihydrobenzofuranyl, quinoxalinyl, benzimidazolyl, Cι_6 alkylbenzimidazolyl or [l,2,4]triazolo[l,5-a]pyridyl; and/or iii) the imidazolyl ring nitrogens are unsubstituted or may be optionally substituted by Cj.6 alkyl.
Those compounds of WO 98/56788 in which the 5-position of the imidazolyl is substituted by 6-methylpyridin-2-yl are novel per se and as such these compounds and their pharmaceutically acceptable salts, and pharmaceutical compositions comprising said compounds and a pharmaceutically acceptable carrier or diluent, form further aspects of the invention. The compounds for use in the invention preferably have a molecular weight of less than
800.
Particular compounds for use according to the invention include those mentioned in the examples and their pharmaceutically acceptable salts.
Suitable pharmaceutically acceptable salts of the compounds for use in the invention include, but are not limited to, salts with inorganic acids such as hydrochloride, sulfate, phosphate, diphosphate, hydrobromide, and nitrate, or salts with an organic acid such as malate, maleate, fumarate, tartrate, succinate, citrate, acetate, lactate, methanesulfonate, p- toluenesulfonate, palmitate, salicylate and stearate.
Some of the compounds may be crystallised or recrystallised from solvents such as aqueous and organic solvents. In such cases solvates may be formed. This invention includes within its scope the use of stoichiometric solvates including hydrates as well as compounds containing variable amounts of water that may be produced by processes such as lyophilisation. Certain of the compounds may exist in the form of optical isomers, e.g. diastereoisomers and mixtures of isomers in all ratios, e.g. racemic mixtures. The invention includes the use of all such forms, in particular the pure isomeric forms. The different isomeric forms may be separated or resolved one from the other by conventional methods, or any given isomer may be obtained by conventional synthetic methods or by stereospecific or asymmetric syntheses. Since the compounds are intended for use in pharmaceutical compositions it will readily be understood that they are each preferably provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure and preferably at least 85%, especially at least 98% pure (% are on a weight for weight basis). Impure preparations of the compounds may be used for preparing the more pure forms used in the pharmaceutical compositions; these less pure preparations of the compounds should contain at least 1%, more suitably at least 5% and preferably at least 10% of the compounds or pharmaceutically acceptable derivative thereof.
The term "Cι.6alkyl" as used herein whether on its own or as part of a larger group e.g. Cι_6alkoxy, means a straight or branched chain radical of 1 to 6 carbon atoms, unless the chain length is limited thereto, including, but not limited to methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl and tert-butyl.
Ci-ehaloalkyl groups may contain one or more halo atoms, a particular Cj-βhaloalkyl group that may be mentioned in CF3.
The terms "halo" or "halogen" are used interchangeably herein to mean radicals derived from the elements chlorine, fluorine, iodine and bromine. The term "cycloalkyl" as used herein means cyclic radicals, preferably of 3 to 7 carbons, including but not limited to cyclopropyl, cyclopentyl and cyclohexyl.
The term "ALK5 inhibitor" as used herein means a compound, other than inhibitory smads, e.g. smadδ and smad7, which selectively inhibits the ALK5 receptor preferentially over p38 or type II receptors. The term "ALK5 mediated disease state" as used herein means any disease state which is mediated (or modulated) by ALK5, for example a disease which is modulated by the inhibition of the phosphorylation of smad 2/3 in the TGF-βl signaling pathway.
The term "ulcers" as used herein includes but is not limited to, diabetic ulcers, chronic ulcers, gastric ulcers, and duodenal ulcers. The compounds for use in the invention may be prepared by art-recognized procedures from known or commercially available starting materials as described in WO 98/56788. In particular the novel compounds of the invention may be prepared as illustrated in Scheme 1. The acetylene is oxidised to the diketone with PdCl2 in DMSO. The diketone is then condensed with glyoxal-l,l-dimethylacetal and ammonium acetate to give the imidazolyl dimethylacetal. Condensation with 2,2-bis(hydroxymethyl)propanoic acid in the presence of pTsOH gives the dioxane carboxylic acid, which can then be coupled with the appropriate amine, using DIC and HOBT, to give the dioxane carboxylic amide. Alternatively the imidazolyl dimethylacetal can be
- A -
condensed with the appropriate amidopropane diol, in the presence of pTsOH, to give the amidodioxane.
Scheme 1
Further details for the preparation of compounds of the invention are found in the examples.
During the synthesis of the compounds of the invention labile functional groups in the intermediate compounds, e.g. hydroxy, carboxy and amino groups, may be protected. A comprehensive discussion of the ways in which various labile functional groups may be protected and methods for cleaving the resulting protected derivatives is given in for example Protective Groups in Organic Chemistry, T.W. Greene and P.G.M. Wuts, (Wiley-Interscience, New York, 2nd edition, 1991).
The compounds of the invention may be prepared singly or as compound libraries comprising at least 2, for example 5 to 1,000 compounds, and more preferably 10 to 100 compounds of the invention. Libraries of compounds may be prepared by a combinatorial 'split and mix' approach or by multiple parallel synthesis using either solution phase or solid phase chemistry, by procedures known to those skilled in the art.
Thus according to a further aspect of the invention there is provided a compound library comprising at least 2 compounds of the invention or pharmaceutically acceptable salts thereof.
ALK5-mediated disease states which may be treated according to the invention include, but are not limited to, chronic renal disease, acute renal disease, wound healing, arthritis, osteoporosis, kidney disease, congestive heart failure, ulcers, ocular disorders, corneal wounds, diabetic nephropathy, impaired neurological function, Alzheimer's disease, atherosclerosis, peritoneal and sub-dermal abrasion, any disease wherein fibrosis is a major component, including, but not limited to lung fibrosis and liver fibrosis, and restenosis.
By the term "treating" is meant either prophylactic or therapeutic therapy. According to a further aspect of the present invention there is provided a method of inhibiting the TGF-β signaling pathway in mammals, for example, inhibiting the phosphorylation of smad2 or smad3 by the type I or activin-like kinase ALK5 receptor, which method comprises administering to a mammal in need of such treatment, an effective amount of an imidazolyl- cyclic acetal as disclosed in WO 98/56788.
According to a further aspect of the present invention there is provided a method of inhibiting matrix formation in mammals by inhibiting the TGF-β signalling pathway, for example, inhibiting the phosphorylation of smad2 or smad3 by the type I or activin-like kinase ALK5 receptor, which method comprises administering to a mammal in need of such treatment, an effective amount of an imidazolyl-cyclic acetal as disclosed in WO 98/56788.
The imidazolyl-cyclic acetals may be administered in conventional dosage forms prepared by combining with standard pharmaceutical carriers or diluents according to conventional procedures well known in the art. These procedures may involve mixing, granulating and compressing or dissolving the ingredients as appropriate to the desired preparation.
The pharmaceutical compositions of the invention may be formulated for administration by any route, and include those in a form adapted for oral, topical or parenteral administration to mammals including humans.
The compositions may be in the form of tablets, capsules, powders, granules, lozenges, creams or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
The topical formulations of the present invention may be presented as, for instance, ointments, creams or lotions, eye ointments and eye or ear drops, impregnated dressings and aerosols, and may contain appropriate conventional additives such as preservatives, solvents to assist drug penetration and emollients in ointments and creams.
The formulations may also contain compatible conventional carriers, such as cream or ointment bases and ethanol or oleyl alcohol for lotions. Such carriers may be present as from about 1% up to about 98% of the formulation. More usually they will form up to about 80% of the formulation.
Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinylpyrrolidone; fillers, for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricants, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants, for example potato starch; or acceptable wetting agents such as sodium lauryl sulphate. The tablets may be coated according to methods well known in normal pharmaceutical practice. Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be
presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may contain conventional additives, such as suspending agents, for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl ^-hydroxybenzoate or sorbic acid, and, if desired, conventional flavouring or colouring agents.
Suppositories will contain conventional suppository bases, e.g. cocoa-butter or other glyceride.
For parenteral administration, fluid unit dosage forms are prepared utilizing the compound and a sterile vehicle, water being preferred. The compound, depending on the vehicle and concentration used, can be either suspended or dissolved in the vehicle. In preparing solutions the compound can be dissolved in water for injection and filter sterilised before filling into a suitable vial or ampoule and sealing.
Advantageously, agents such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle. To enhance the stability, the composition can be frozen after filling into the vial and the water removed under vacuum. The dry lyophilized powder is then sealed in the vial and an accompanying vial of water for injection may be supplied to reconstitute the liquid prior to use. Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilization cannot be accomplished by filtration. The compound can be sterilised by exposure to ethylene oxide before suspending in the sterile vehicle. Advantageously, a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the compound. The compositions may contain from 0.1% by weight, preferably from 10-60% by weight, of the active material, depending on the method of administration. Where the compositions comprise dosage units, each unit will preferably contain from 50-500 mg of the active ingredient. The dosage as employed for adult human treatment will preferably range from 100 to 3000 mg per day, for instance 1500 mg per day depending on the route and frequency of administration. Such a dosage corresponds to 1.5 to 50 mg/kg per day. Suitably the dosage is from 5 to 20 mg/kg per day.
It will be recognized by one of skill in the art that the optimal quantity and spacing of individual dosages will be determined by the nature and extent of the condition being treated, the form, route and site of administration, and the particular mammal being treated, and that such optimums can be determined by conventional techniques. It will also be appreciated by one of skill in the art that the optimal course of treatment, i.e., the number of doses given per day for a defined number of days, can be ascertained by those skilled in the art using conventional course of treatment determination tests.
No toxicological effects are indicated when an imidazolyl-cyclic acetal as disclosed in WO 98/56788 is administered in the above-mentioned dosage range.
All publications, including, but not limited to, patents and patent applications cited in this specification, are herein incorporated by reference as if each individual publication were
specifically and individually indicated to be incorporated by reference herein as though fully set forth.
The following examples are to be construed as merely illustrative and not a limitation on the scope of the invention in any way.
Abbreviations
TBuOMe - tert-butylmethoxide
Cul - copper(I) iodide
DMF - dimethylformamide DMSO - dimethylsulfoxide
EtOAc - ethyl acetate
EtOH - ethanol
H20 - water
HOAc - acetic acid K2C03 - potassium carbonate
MeOH - methanol
MgS0 - magnesium sulphate
NaOH - sodium hydroxide
NH3 - ammonia NH Oac - ammonium acetate iPr2NH - diisopropylamine
PdCl2 - palladium(II) chloride
Pd(PPh3)2Cl2 - dichlorobis(triphenylphosphine)palladium(0)
Pd(PPh3)4 - tetrakis(triphenylphosphine)palladium(0) THF - tetrahydrofuran
TMEDA - N-N-N-N5- tetramethylethylenediamine pTsOH - /?αrø-toluenesulfonic acid
Description 1: 4-Bromo-l,2-diaminobenzene (Dl) A stirred suspension of 4-bromo-2-nitroaniline (28.3 g, 130 mmole) in a mixture of EtOH (275 ml) and H20 (320 ml) was heated at 90°C until all material had dissolved, then treated with sodium dithionite (136 g, 780 mmole). The mixture instantly decolourised and was allowed to cool. The EtOH was removed in vacuo and the residue extracted with dichloromethane (3x). The organics were combined, dried (MgS0 ) and concentrated to dryness in vacuo giving the title compound as a beige solid (17.0 g, 70%); MS: m/z (MH) = 187, 189.
Description 2: 6-Bromoquinoxaline (D2)
A stirred suspension of Dl (33.3 g, 178 mmole) and glyoxal sodium bisulfite addition compound (71.1 g, 267 mmole) in H20 was heated at 65°C under argon for 4 h. On cooling the mixture was adjusted to pH14 with 2M NaOH solution and extracted with EtOAc (2x). The organics were combined, dried (MgS04) and concentrated to dryness in vacuo. Purification by flash silica chromatography, eluting with EtOAc / 60-80°C petrol gradient, gave the title compound as a pale orange solid (32.9 g, 88%); MS: m/z (MH) = 209, 211.
Description 3: 6-TrimethyIsilyI ethynylquino aline (D3)
A stirred solution of D2 (12.4 g, 59.3 mmole) in anhydrous THF (120 ml) was bubbled with argon for 20 min, then treated with Cul (1.13 g, 5.93 mmole) and Pd(PPh3)2Cl2 (0.83 g, 1.19 mmole) and stirring continued under argon. Trimethylsilylacetylene was added (31.8 ml, 225 mmole) followed by dropwise addition of 'Pr2NH (51.0 ml, 380 mmole) and stirring continued. After 18 h the mixture was partitioned between EtOAc and H20. The organic phase was separated, washed with H20 and brine, dried (MgS0 ) and concentrated to dryness in vacuo. Purification by flash silica chromatography, eluting with 20% EtOAc / 40-60°C petrol, gave the title compound as a dark orange solid (11.7 g, 87%); MS: m/z (MH) = 227.
Description 4: 6-Ethynylquinoxaline (D4)
A solution of D3 (11.7 g, 51.8 mmole) in MeOH (275 ml) was treated with K2C03 (21.4 g, 155 mmole) and stirred at room temperature under argon for 1 h. The mixture was then filtered and concentrated to dryness in vacuo. The residue was partitioned between EtOAc and H20, the organic layer separated, washed with brine, dried (MgS0 ) and concentrated to dryness in vacuo giving the title compound as a beige solid (7.19 g, 91%); MS: m/z (MH) = 155.
Description 5: 6-(6-Methylpyridin-2-yI ethynyl) quinoxaline (D5) A stirred solution of D4 (6.0 g, 39.0 mmole) in a mixture of THF (135 ml) and TMEDA (135 ml) was treated with 2-bromo-6-methylpyridine (8.86 ml, 77.9 mmole) and bubbled with argon for 10 min. Cul (0.74 g, 3.90 mmole) and Pd(PPh3)4 (2.25 g, 1.95 mmole) were added and the mixture heated at 55°C under argon for 7 h. On cooling, a saturated aqueous solution of NH C1 was added and the mixture extracted with EtOAc. The organic phase was separated, washed with H20 and brine, dried (MgS04) then concentrated to dryness in vacuo. The crude material was purified by flash silica chromatography, eluting with EtOAc / 60-80°C petrol gradient, giving the title compound as a yellow solid (7.65 g, 80%); MS: m/z (MH) = 246.
Description 6: l-(6-Methylpyridin-2-yl)-2-quinoxalin-6-yl ethane-l,2-dione (D6) A stirred solution of D5 (7.65 g, 31.2 mmole) in DMSO (90 ml) was treated with PdCl2 (0.55 g, 3.1 mmole) and heated at 140°C for 4 h, then cooled to room temperature and partitioned between H20 and EtOAc. The organic phase was separated and the aqueous extraced with further EtOAc (2x). The combined organics were washed with H20 and brine, then dried (MgS04) and concentrated to dryness in vacuo. The crude material was purified by flash silica chromatography, eluting with 50% EtOAc / 40-60°C petrol, to afford the title compound as a yellow solid (4.32 g, 50%); MS: m/z (MH) = 278.
Description 7: 6-[2-(l,l-Dimethoxymethyl)-5-(6-methylpyridin-2-yl)-3H-imidazol-4- yl] quinoxaline (D7) A stirred suspension of D6 (4.86 g, 17.5 mmole) in 'BuOMe (24 ml) was treated with a solution of glyoxal- 1,1 -dimethylacetal (9.0 ml, 35.1 mmole, 45%) solution in 'BuOMe), followed by a solution of NH OAc (6.75 g, 87.7 mmole) in MeOH (13 ml). The resulting solution was stirred at room temperature under argon for 17 h, then partitioned between H20 and EtOAc. The
organic phase was separated and the aqueous extracted with further EtOAc (2x). The combined organics were dried (MgS0 ) then concentrated to dryness in vacuo to give the title compound as an orange gum (6.30 g, 99%); MS: m/z (MH) = 362.
Description 8: 5-Methyl-2-[5-(6-methyIpyridin-2-yI)-4-quinoxalin-6-yI-lH-imidazol-2-yl]- [l,3]-dioxane-5-carboxyIic acid (D8)
A stirred solution of D7 (0.50 g, 1.39 mmole) in anhydrous THF (20 ml) was treated with 2,2- bis(hydroxymethyl) propionic acid (2.0 g, 14.9 mmole) and pTsOH (250 mg, 1.45 mmole) and heated at reflux under argon for 5 days. The mixture was then cooled and loaded onto SCX resin. The resin was washed with dichloromethane (20 ml), 50% MeOH / dichloromethane (20 ml) and MeOH (20 ml), then the product was eluted with a solution of 1% NH3 / MeOH. Concentration to dryness in vacuo afforded the title compound as an orange solid (0.51 g, 85%); MS: m/z (MH) = 432.
Description 9: 2-Benzamido-2-methyl-l,3-propanediol (D9)
A stirred solution of benzoic acid (1.0 g, 8.20 mmole) in anhydrous DMF (25 ml) was treated with EDC (2.35 g, 12.3 mmole) and HOAT (1.67 g, 12.3 mmole) and stirred under argon at room temperature for 20 min. 2-Amino-2-methyl-l,3-propanediol (1.72 g, 16.4 mmole) was added and stirring continued for 42 h. The mixture was then loaded onto SCX resin and the crude product eluted with 50% MeOH / dichloromethane. Purification by flash silica chromatography, eluting with MeOH / dichloromethane gradient, gave the title compound as a white solid (1.29 g, 75%); MS: m/z (MH) = 208.
Example 1: Trans 5-methyl-2-[5-(6-methylpyridin-2-yl)-4-quinoxalin-6-yl-lH-imidazol-2- yl]-[l,3]-dioxane-5-carboxylic acid (4-met yIpiperazin-l-yl) amide (El)
A solution of D8 (100 mg, 0.23 mmole) in anhydrous DMF (5 ml) was treated with DIC (44 mg, 0.35 mmole) and HOBT.H20 (53 mg, 0.35 mmole) and stirred at room temperature under argon. After 30 min a solution of N-methylpiperazine (46 mg, 0.46 mmole) in anhydrous DMF (1 ml) was added and stirring continued for 48 h. Methylisocyanate scavenger resin and dichloromethane (10 ml) were added and stirring continued. After 24 h, the mixture was filtered and concentrated to dryness in vacuo. The crude product was passed through SAX resin eluting with dichloromethane. Concentration to dryness in vacuo gave the title compound as a yellow solid (14 mg, 12%); MS: m/z (MH) = 514. 'HNMR (400 MHz, CDC13): δppm): 8.81 (m, 2H), 8.40 (s, 1H), 8.13-8.08 (m, 2H), 7.41-7.27 (m, 2H), 7.00 (d, 1H), 5.78 (s, 1H), 4.80 (d, 2H), 3.73-
3.62 (m, 6H), 2.59 (s, 3H), 2.44 (br. s, 4H), 2.31 (s, 3H), 1.15 (s, 3H). imidazole NH not discernible.
Example 2: Trans 5-methyI-2-[5-(6-methylpyridin-2-yl)-4-quinoxalin-6-yI-lH-imidazol-2- yl]-[l,3]-dioxane-5-carboxylic acid morpholine amide (E2)
The title compound was prepared from D8 (100 mg, 0.23 mmole) and morpholine (40 mg, 0.46 mmole) using a similar procedure to E 1 , as a yellow solid (46 mg, 40%); MS : m/z (MH) = 501. 'H NMR (400 MHz, CDC13): δppm): 8.83 (m, 2H), 8.39 (s, IH), 8.15-8.07 (m, 2H), 7.41 (dd, IH), 7.32 (br. d, IH), 7.01 (d, IH), 5.79 (s, IH), 4.79 (d, 2H), 4.23 (s, IH), 3.74-3.67 (m, 10H), 2.57 (s, 3H), 1.16 (s, 3H).
Example 3: Trans 5-methyl-2-[5-(6-methylpyridin-2-yl)-4-quinoxalin-6-yI-l-fϊ-imidazoI-2- yl]-[l,3]-dioxane-5-carboxy!ic acid (pyridin-2-ylmethyI) amide (E3)
The title compound was prepared from D8 (130 mg, 0.30 mmole) and 2-aminomethylpyridine (64 mg, 0.60 mmole) using a similar procedure to El. The crude material was purified using the Parallex Flex, rather than using SAX resin, giving the trifluoroacetate salt of the title compound as a yellow / brown solid (5 mg, 3%); MS: m/z (MH) = 522. Η NMR (400 MHz, CDC13, trifluoroacetate salt): δppm): 8.92 (s, IH), 8.88 (s, IH), 8.76 (m, IH), 8.65 (d, IH), 8.32 (dd, IH), 8.27 (s, IH), 8.18 (d, IH), 8.00-7.90 (m, 3H), 7.74 (dd, IH), 7.48 (d, IH), 7.41 (d, IH), 5.91 (s, IH), 4.89 (d, 2H), 4.38 (d, 2H), 3.85 (d, 2H), 2.79 (s, 3H), 1.00 (s, 3H). imidazole NH not discernible.
Example 4: Trans 5-methyl-2-[5-(6-methylpyridin-2-yl)-4-quinoxalin-6-yl-lH-imidazol-2- yl]-[l,3]-dioxane-5-carboxylic acid benzyl amide (E4)
The trifluoroacetate salt of the title compound was prepared from D8 (250 mg, 0.58 mmole) and benzylamine (124 mg, 1.16 mmole) using a similar procedure to E3, as a yellow / brown solid (28 mg, 8%); MS: m/z (MH) = 521. 2H NMR (400 MHz, CDC13, trifluoroacetate salt): Dppm): 8.97 (s, IH), 8.91 (s, IH), 8.27-8.24 (m, 2H), 8.01 (d, IH), 7.92 (dd, IH), 7.50 (d, IH), 7.43 (d, IH), 7.26-7.24 (m, 2H), 7.06 (dd, 2H), 6.89 (dd, IH), 5.91 (s, IH), 4.58 (d, 2H), 4.50 (d, 2H), 3.86 (d, 2H), 2.81 (s, 3H), 1.09 (s, 3H). amide and imidazole NHs not discernible.
Example 5: Trans 5-methyI-2-[5-(6-methyIpyridin-2-yl)-4-quinoxalin~6-yl-lH-imidazol-2- yl]-[l,3]-dioxane-5-benzamide (E5)
The title compound was prepared from D7 (100 mg, 0.28 mmole) and D9 (116 mg, 0.55 mmole) using a similar procedure to D8. The crude material was purified using the Parallex Flex, giving the trifluoroacetate salt of the title compound as a yellow / brown solid (12 mg, 9%); MS: m/z (MH) = 507. Η NMR (400 MHz, CDC13, trifluoroacetate salt): δppm): 8.92 (d, IH), 8.87 (d, IH), 8.24 (d, IH), 8.19 (d, IH), 7.98 (dd, IH), 7.89-7.85 (m, 3H), 7.47-7.34 (m, 5H), 5.86 (s, IH), 4.61 (d, 2H), 3.79 (d, 2H), 2.83 (s, 3H), 1.44 (s, 3H). amide and imidazole NHs not discernible.
Biological Data
The biological activity of the compounds may be assessed using the following assays: Method for evaluating ALK5 kinase phosphorylation of smad3
Basic Flash-Plates (NEN Life Sciences) were coated by pipetting 100 micro liter of 0.1 molar sodium bicarbonate (pH 7.6), containing 150 nanograms of the fusion protein glutathion-S- transferase-smad3/100 micro liter of coating buffer. Plates were covered and incubated at room
temperature for 10-24 hours. Then the plates were washed 2 times with 200 micro liter of coating buffer (0.1 molar sodium bicarbonate) and allowed to air dry for 2-4 hours.
For the phosphorylation reaction each well received 100 microliter containing 50 millimolar HEPES buffer (pH 7.4); 5 millimolar MgCl ; 1 millimolar CaCl2; 1 millimolar dithiothreitol; 100 micromolar guanosine triphosphate; 0.5 micro Ci/well gamma-^P-adenosine triphosphate (NEN Life Sciences) and 400 nanograms of a fusion protein of glutathion -S- transferase at the N-terminal end of the kinase domain of ALK5 (GST-ALK5). Background counts were measured by not adding any GST-ALK5. Inhibitors of ALK5 were evaluated by determining the activity of the enzyme in the presence of various compounds. Plates were incubated for 3 hours at 30°C. After incubation the assay buffer was removed by aspiration and the wells were washed 3 times with 200 microliter cold 10 millimolar sodium pyrophosphate in phosphate buffered saline. The last wash was aspirated and blotted plate dry. Plate was then counted on a Packard TopCount.
Fluorescence Anisotropy Kinase Binding Assay
The kinase enzyme, fluorescent ligand and a variable concentration of test compound are incubated together to reach thermodynamic equilibrium under conditions such that in the absence of test compound the fluorescent ligand is significantly (>50%) enzyme bound and in the presence of a sufficient concentration (>10x Kj) of a potent inhibitor the anisotropy of the unbound fluorescent ligand is measurably different from the bound value.
The concentration of kinase enzyme should preferably be > 1 x Kf. The concentration of fluorescent ligand required will depend on the instrumentation used, and the fluorescent and physicochemical properties. The concentration used must be lower than the concentration of kinase enzyme, and preferably less than half the kinase enzyme concentration. A typical protocol is:
All components dissolved in Buffer of final composition 50 mM HEPES, pH 7.5, 1 mM CHAPS, 1 mM DTT, 10 mM MgCl2 2.5% DMSO.
ALK5 Enzyme concentration: 4 nM
Fluorescent ligand concentration: 1 nM Test compound concentration: 0.1 nM - 100 uM
Components incubated in 10 ul final volume in LJL HE 384 type B black microtitre plate until equilibrium reached (5-30 mins)
Fluorescence anisotropy read in LJL Acquest. Definitions: Kj = dissociation constant for inhibitor binding Kf = dissociation constant for fluorescent ligand binding
The fluorescent ligand is the following compound:
which is derived from 5-[2-(4-aminomethylphenyl)-5-pyridin-4-yl-lH-imidazol-4-yl]-2- chlorophenol and rhodamine green.
Inhibition of Matrix Markers: Northern Blot Protocol Data confirming activity in the enzyme assay was obtained as follows:
A498 renal epithelial carcinoma cell lines were obtained from ATCC and grown in EMEM medium supplemented with 10% fetal calf serum, penicillin (5 units/ml) and streptomycin (5ng/ml). A498 cells were grown to near confluence in 100mm dishes, serum- starved for 24 hours, pre-treated with compounds for 4 hours followed by a lOng/ml addition of TGF-betal (R&D Systems, Inc., Minneapolis MN). Cells were exposed to TGF-betal for 24 hours. Cellular RNA was extracted by acid phenol/chloroform extraction (Chomczynski and Sacchi, 1987). Ten micrograms of total RNA were resolved by agarose gel electrophoresis and transferred to nylon membrane (GeneScreen, NEN Life Sciences, Boston MA). Membranes were probed with 32P-labeled cDNA probes (Stratagene, La Jolla, CA) for fibronectin mRNA. Membranes were exposed to phosphorimaging plates and bands were visualized and quantified with ImageQuant software (Molecular Dynamics, Sunnyvale, CA).
Inhibition of Matrix Markers: Western Blot Protocol
Cells were grown to near confluence in flasks, starved overnight and treated with TGF- beta and compounds. Cells were washed at 24 or 48 hours after treatment with ice cold phosphate buffered saline, then 500 microliter of 2X loading buffer was added to plate and cells were scraped and collected in microcentrifuge tube. (2X loading buffer: 100 mM Tris-Cl, pH6.8, 4% sodium dodecyl sulfate, 0.2% bromophenol blue, 20% glycerol, 5% beta-mercapto-ethanol). Cells were lysed in tube and vortexed. Sample was boiled for 10 minutes. 20 microliters of sample was loaded on 7.5% polyacrylamide gel (BioRad) and electrophoresed.
Size fractionated proteins in gel were transferred to nitrocellulose membrane by semidry blotting. Membrane was blocked overnight with 5% powdered milk in phosphate buffer saline (PBS) and 0.05% Tween-20 at 4 degrees C. After 3 washes with PBS/Tween membranes were incubated with primary antibody for 4 hours at room temperature. After three washes with PBS/Tween membrane was incubated with secondary antibody for 1 hour at room temperature. Finally, a signal was visualized with ECL detection kit from Amersham.
The compounds generally show ALK5 receptor modulator activity having IC5Q values in the range of 0.0001 to 10 μM.