WO2002024197A1 - Fatty acid synthase inhibitors - Google Patents

Fatty acid synthase inhibitors Download PDF

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Publication number
WO2002024197A1
WO2002024197A1 PCT/US2001/029490 US0129490W WO0224197A1 WO 2002024197 A1 WO2002024197 A1 WO 2002024197A1 US 0129490 W US0129490 W US 0129490W WO 0224197 A1 WO0224197 A1 WO 0224197A1
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Prior art keywords
azetidin
oxo
compound
compounds
methyl
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PCT/US2001/029490
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French (fr)
Inventor
Robert A. Daines
Israil Pendrak
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Smithkline Beecham Corporation
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Priority to EP01971255A priority Critical patent/EP1318806A4/en
Priority to JP2002528267A priority patent/JP2004513887A/en
Priority to AU2001291160A priority patent/AU2001291160A1/en
Publication of WO2002024197A1 publication Critical patent/WO2002024197A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/397Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having four-membered rings, e.g. azetidine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00

Definitions

  • This invention relates to the use of N-acyl beta lactam compounds as inhibitors of the fatty acid synthase FabH.
  • the pathway for the biosynthesis of saturated fatty acids is very similar in prokaryotes and eukaryotes.
  • Vertebrates and yeasts possess type I fatty acid synthases (FASs) in which all of the enzymatic activities are encoded on one or two polypeptide chains, respectively.
  • FOSs type I fatty acid synthases
  • ACP acyl carrier protein
  • each of the reactions are catalyzed by distinct monofunctional enzymes and the ACP is a discrete protein.
  • Mycobacteria are unique in that they possess both type I and II FASs; the former is involved in basic fatty acid biosynthesis whereas the latter is involved in synthesis of complex cell envelope lipids such as mycolic acids. There therefore appears to be considerable potential for selective inhibition of the bacterial systems by broad-spectrum antibacterial agents (Jackowski, S. 1992. In Emerging Targets in Antibacterial and Antifungal Chemotherapy. Ed. J. Sutcliffe & N. Georgopapadakou. Chapman & Hall, New York; Jackowski, S. et al. (1989). J. Biol. Chem. 264, 7624-7629.)
  • the first step in the biosynthetic cycle is the condensation of malonyl-ACP with acetyl-CoA by FabH.
  • malonyl-ACP is condensed with the growing-chain acyl-ACP (FabB and FabF, synthases I and II respectively).
  • the second step in the elongation cycle is ketoester reduction by NADPH-dependent ⁇ - ketoacyl-ACP reductase (FabG).
  • Fab H is therefore a major biosynthetic enzyme, which is also a key regulatory point in the overall synthetic pathway (Heath, R.J. and Rock, CO. 1996. J.Biol.Chem. 271, 1833-1836; Heath, R.J. and Rock, CO. 1996. J.Biol.Chem. 271, 10996- 11000).
  • the antibiotic thiolactomycin has broad-spectrum antibacterial activity both in vivo and in vitro and has been shown to specifically inhibit all three condensing enzymes. It is non-toxic and does not inhibit mammalian FASs (Hayashi, T. et al.,1984. J. Antibiotics 37, 1456-1461; Miyakawa, S. et al., 1982. J. Antibiotics 35, 411-419; Nawata, Y et al., 1989. Acta Cryst. C45, 978-979; Noto, T. et al., 1982. J. Antibiotics 35, 401-410; Oishi, H. et al., 1982. J. Antibiotics 35, 391-396.
  • cerulenin is a potent inhibitor of FabB & F and is bactericidal but is toxic to eukaryotes because it competes for the fatty-acyl binding site common to both FAS types (DAgnolo, G. et al.,1973. Biochim. Biophys. Acta. 326, 155-166). Extensive work with these inhibitors has proved that these enzymes are essential for viability. Little work has been carried out in Gram-positive bacteria.
  • This invention involves N-acyl beta-lactam compounds and pharmaceutical compositions containing these compounds and their use as FabH inhibitors that are useful as antibiotics for the treatment of Gram positive and Gram negative bacterial infections.
  • This invention further constitutes a method for treatment of a Gram negative or Gram positive bacterial infection in an animal, including humans, which comprises administering to an animal in need thereof, an effective amount of a compound of this invention.
  • Rl is selected rom the group consisting of Me, CO2R4, COR4, CONR5R6,
  • R2 represents H, or Cl - C4 alkyl
  • R3 represents H, or Cl - C4 alkyl
  • R4 represents Cl - C4 alkyl
  • R5 and R6 are, independently, H, lower alkyl or together form a 5 or 6 membered heterocycle selected from the group consisting of piperidine, mo ⁇ holine, piperazine,
  • n is an integer from 1 to 12.
  • alkyl means both straight and branched chains of 1 to 6 carbon atoms, unless the chain length is otherwise limited, including, but not limited to, methyl, ethyl, -propyl, wo-propyl, n-butyl, sec-butyl, w ⁇ -butyl, tert-butyl, n- pentyl and the like.
  • the alkyl may cany substituents such as hydroxy, carboxy, alkoxy, and the like.
  • the compounds of this invention may contain one or more asymmetric carbon atoms and may exist in racemic and optically active forms. All of these compounds and diastereomers are contemplated to be within the scope of the present invention.
  • solvates may be formed.
  • This invention includes within its scope stoichiometric solvates including hydrates as well as compounds containing variable amounts of water that may be produced by processes such as lyophilisation.
  • the antibiotic compounds of the invention are intended for use in pharmaceutical compositions it will readily be understood that they are each provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure and preferably at least 85%, especially at least 95% pure, particularly at least 98% pure (% are on a weight for weight basis).
  • Impure preparations of the compounds may be used for preparing the more pure forms used in the pharmaceutical compositions; these less pure preparations of the compounds should contain at least 1%, more suitably at least 5% and preferably from 10 to 49% of a compound of the formula (I) or salt thereof.
  • Preferred compounds of the present invention include: l-(3-phenyl-propanoyl)-azetidin-2-one; 1 -hexanoyl-azetidin-2-one; l-(2-phenyl-ethanoyl)-azetidin-2-one;
  • the present invention provides compounds of formula (I).
  • Compounds of the formula I were prepared via the method outlined in Scheme 1.
  • Rl is phenyl
  • the base utilized in the above example is not limited to the use of BEMP on polystyrene or to the use of polymer bound reagents in general.
  • a variety of soluble bases may also be employed to obtain the desired results.
  • suitable bases include NaH, sodium bis(trimethylsilyl)amide, 2-tert-butylimino-2-diethylamino- l,3-dimethyl-perhydro-l,3,2-diazaphosphorine (BEMP) or n-butyl lithium.
  • Azetidinone 3 (Bioorg ⁇ nic and Medicinal Chemistry Letters, 1996, 6(8), 983-986) is treated with 2 equivalents of a strong base such lithium diisopropylamide (LDA), followed by the addition of 2 equivalents of methyl iodide (Scheme 2).
  • LDA lithium diisopropylamide
  • Scheme 2 The silyl protecting group is then removed under non-nucleophilic conditions using methanol and aqueous HC1. This method affords the dimethyl azetidinone 4.
  • Other alkylating agents can be used in place of methyl iodide to afford alternative dialkylated derivatives.
  • BEMP 2-tert-butylimino-2-diethylamino- 1 ,3-dimethyl-perhydro- 1 ,3,2- diazaphosphorine.
  • Example 4 The title compound was prepared according to the procedure described for Example 1 substituting phenylacetyl chloride for hydrocinnamoyl chloride. The product was obtained, following purification by HPLC, as a white solid. LC/MS (ES+) m/e 190.0 [M+HJ+. Example 4
  • the title compound was prepared according to the procedure for 6b, above, with the modification of substituting 7a in place of 6a.
  • FabH was assayed in a coupled format using his-tagged S.aureus FabD, and acyl carrier protein (ACP) purchased from Sigma. Lyophilized ACP was reduced using ⁇ -mercaptoethanol in phosphate buffer. Malonyl-CoA, and FabD were added to the reduced ACP, thus generating malonyl-ACP. After the FabD reaction reached equilibrium, [ ⁇ C] acetyl-CoA and inhibitors were added, and the reaction started by the addition of FabH. TCA precipitation and filtration was used to separate [ ⁇ C] acetyl-CoA substrate from [l ⁇ C] acetoacetyl-ACP product.
  • ACP acyl carrier protein
  • the present invention also provides a pharmaceutical composition, which comprises a compound of formula (I) or a pharmaceutically acceptable salt or in vivo hydrolysable ester thereof, and a pharmaceutically acceptable carrier.
  • a pharmaceutical composition which comprises a compound of formula (I) or a pharmaceutically acceptable salt or in vivo hydrolysable ester thereof, and a pharmaceutically acceptable carrier.
  • the compositions of the invention include those in a form adapted for oral, topical or parenteral use and may be used for the treatment of bacterial infection in mammals including humans.
  • the antibiotic compounds according to the invention may be formulated for administration in any convenient way for use in human or veterinary medicine, by analogy with other antibiotics.
  • compositions may be formulated for administration by any route, such as oral, topical or parenteral, especially oral.
  • the compositions may be in the form of tablets, capsules, powders, granules, lozenges, creams or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
  • topical formulations of the present invention may be presented as, for instance, ointments, creams or lotions, eye ointments and eye or ear drops, impregnated dressings and aerosols, and may contain appropriate conventional additives such as preservatives, solvents to assist drug penetration and emollients in ointments and creams.
  • the formulations may also contain compatible conventional carriers, such as cream or ointment bases and ethanol or oleyl alcohol for lotions.
  • suitable conventional carriers such as cream or ointment bases and ethanol or oleyl alcohol for lotions.
  • Such carriers may be present as from about 1% up to about 98% of the formulation. More usually they will form up to about 80% of the formulation.
  • Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinylpyrollidone; fillers, for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricants, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants, for example potato starch; or acceptable wetting agents such as sodium lauryl sulphate.
  • the tablets may be coated according to methods well known in normal pharmaceutical practice.
  • Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use.
  • Such liquid preparations may contain conventional additives, such as suspending agents, for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and, if desired, conventional flavouring or colouring agents.
  • suspending agents for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or
  • Suppositories will contain conventional suppository bases, e.g. cocoa-butter or other glyceride.
  • fluid unit dosage forms are prepared utilizing the compound and a sterile vehicle, water being preferred.
  • the compound depending on the vehicle and concentration used, can be either suspended or dissolved in the vehicle.
  • the compound can be dissolved in water for injection and filter sterilized before filling into a suitable vial or ampoule and sealing.
  • the solution preferably contains a buffer (such as phosphate) to keep the pH in the range of about 3.5 to 7.
  • DMSO or alcoholic solvents may also be present (at concentrations such as 0.01 to 10 mL/liter) to aid solubility and penetration of the compound of Formula (I)
  • agents such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle.
  • the composition can be frozen after filling into the vial and the water removed under vacuum. The dry lyophilized powder is then sealed in the vial and an accompanying vial of water for injection may be supplied to reconstitute the liquid prior to use.
  • Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilization cannot be accomplished by filtration.
  • the compound can be sterilized by exposure to ethylene oxide before suspending in the sterile vehicle.
  • a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the compound.
  • compositions may contain from 0.1% by weight, preferably from 10-60% by weight, of the active material, depending on the method of administration. Where the compositions comprise dosage units, each unit will preferably contain from 50-500 mg of the active ingredient.
  • the dosage as employed for adult human treatment will preferably range from 1 to 140 mg/kg of body weight, depending on the route and frequency of administration.
  • Inhibitors of ⁇ -ketoacyl-ACP Synthase (FabH) can be administered by injection in solutions either intravenously, intramuscularly, intraperitoneally, or orally.
  • the solution preferably contains a buffer (such as phosphate) to keep the pH in the range of about 3.5 to 7.
  • DMSO or alcoholic solvents may also be present (at concentrations such as 0.01 to 10 mL/liter) to aid solubility and penetration of the ⁇ - ketoacyl-ACP Synthase (FabH) inhibitor.
  • FSH ⁇ - ketoacyl-ACP Synthase
  • the compound of formula (I) may be the sole therapeutic agent in the compositions of the invention or a combination with other antibiotics or compounds which enhance the antibacterial activity of a compound of formula (I)may be employed.
  • the antibiotic compounds of the present invention are active against a wide range of organisms including both Gram-negative organisms such as Escherichia coli and Klebsiella pneumoniae and Gram-positive organisms such as Staphylococcus aureus, Streptococcus pneumoniae, Enterococcus faecalis and Enterococcus faecium, including isolates resistant to existing antibiotics.

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Abstract

This invention relates to the use of compounds as inhibitors of the fatty acid synthase FabH.

Description

FATTY ACID S YNTHASE INHIBITORS
FIELD OF THE INVENTION
This invention relates to the use of N-acyl beta lactam compounds as inhibitors of the fatty acid synthase FabH.
BACKGROUND OF THE INVENTION
The pathway for the biosynthesis of saturated fatty acids is very similar in prokaryotes and eukaryotes. However, although the chemical reactions may not vary, the organization of the biosynthetic apparatus is very different. Vertebrates and yeasts possess type I fatty acid synthases (FASs) in which all of the enzymatic activities are encoded on one or two polypeptide chains, respectively. The acyl carrier protein (ACP) is an integral part of the complex. In contrast, in most bacterial and plant FASs (type II) each of the reactions are catalyzed by distinct monofunctional enzymes and the ACP is a discrete protein. Mycobacteria are unique in that they possess both type I and II FASs; the former is involved in basic fatty acid biosynthesis whereas the latter is involved in synthesis of complex cell envelope lipids such as mycolic acids. There therefore appears to be considerable potential for selective inhibition of the bacterial systems by broad-spectrum antibacterial agents (Jackowski, S. 1992. In Emerging Targets in Antibacterial and Antifungal Chemotherapy. Ed. J. Sutcliffe & N. Georgopapadakou. Chapman & Hall, New York; Jackowski, S. et al. (1989). J. Biol. Chem. 264, 7624-7629.)
The first step in the biosynthetic cycle is the condensation of malonyl-ACP with acetyl-CoA by FabH. In subsequent rounds malonyl-ACP is condensed with the growing-chain acyl-ACP (FabB and FabF, synthases I and II respectively). The second step in the elongation cycle is ketoester reduction by NADPH-dependent β- ketoacyl-ACP reductase (FabG). Subsequent dehydration by β-hydroxyacyl-ACP dehydrase (either FabA or FabZ) leads to trans-2-enoyl-ACP which is in turn converted to acyl-ACP by NADH-dependent enoyl-ACP reductase (Fabl). Further rounds of this cycle, adding two carbon atoms per cycle, eventually lead to palmitoyl-ACP whereupon the cycle is stopped largely due to feedback inhibition of FabH and I by palmitoyl-ACP (Heath, et al, (1996), J.Biol.Chem. 271, 1833-1836). Fab H is therefore a major biosynthetic enzyme, which is also a key regulatory point in the overall synthetic pathway (Heath, R.J. and Rock, CO. 1996. J.Biol.Chem. 271, 1833-1836; Heath, R.J. and Rock, CO. 1996. J.Biol.Chem. 271, 10996- 11000).
The antibiotic thiolactomycin has broad-spectrum antibacterial activity both in vivo and in vitro and has been shown to specifically inhibit all three condensing enzymes. It is non-toxic and does not inhibit mammalian FASs (Hayashi, T. et al.,1984. J. Antibiotics 37, 1456-1461; Miyakawa, S. et al., 1982. J. Antibiotics 35, 411-419; Nawata, Y et al., 1989. Acta Cryst. C45, 978-979; Noto, T. et al., 1982. J. Antibiotics 35, 401-410; Oishi, H. et al., 1982. J. Antibiotics 35, 391-396. Similarly, cerulenin is a potent inhibitor of FabB & F and is bactericidal but is toxic to eukaryotes because it competes for the fatty-acyl binding site common to both FAS types (DAgnolo, G. et al.,1973. Biochim. Biophys. Acta. 326, 155-166). Extensive work with these inhibitors has proved that these enzymes are essential for viability. Little work has been carried out in Gram-positive bacteria.
There is an unmet need for developing new classes of antibiotic compounds that are not subject to existing resistance mechanisms. No marketed antibiotics are targeted against fatty acid biosynthesis, therefore it is unlikely that novel antibiotics of this type would be rendered inactive by known antibiotic resistance mechanisms. Moreover, this is a potentially broad-spectrum target. Therefore, FabH inhibitors would serve to meet this unmet need.
SUMMARY OF THE INVENTION
This invention involves N-acyl beta-lactam compounds and pharmaceutical compositions containing these compounds and their use as FabH inhibitors that are useful as antibiotics for the treatment of Gram positive and Gram negative bacterial infections. This invention further constitutes a method for treatment of a Gram negative or Gram positive bacterial infection in an animal, including humans, which comprises administering to an animal in need thereof, an effective amount of a compound of this invention.
DETAILED DESCRIPTION OF THE INVENTION
The compounds of this invention are represented by Formula (I):
Figure imgf000004_0001
wherein:
Rl is selected rom the group consisting of Me, CO2R4, COR4, CONR5R6,
CH(OH)R4, aryl, substituted aryl, heteroaryl and substituted heteroaryl;
R2 represents H, or Cl - C4 alkyl;
R3 represents H, or Cl - C4 alkyl;
R4 represents Cl - C4 alkyl;
R5 and R6 are, independently, H, lower alkyl or together form a 5 or 6 membered heterocycle selected from the group consisting of piperidine, moφholine, piperazine,
N-methyl piperazine and hydroxy piperidine; and n is an integer from 1 to 12.
Also included in the invention are pharmaceutically acceptable salt complexes.
As used herein, "alkyl" means both straight and branched chains of 1 to 6 carbon atoms, unless the chain length is otherwise limited, including, but not limited to, methyl, ethyl, -propyl, wo-propyl, n-butyl, sec-butyl, wø-butyl, tert-butyl, n- pentyl and the like. The alkyl may cany substituents such as hydroxy, carboxy, alkoxy, and the like. The compounds of this invention may contain one or more asymmetric carbon atoms and may exist in racemic and optically active forms. All of these compounds and diastereomers are contemplated to be within the scope of the present invention.
Some of the compounds of this invention may be crystallised or recrystallised from solvents such as organic solvents. In such cases solvates may be formed. This invention includes within its scope stoichiometric solvates including hydrates as well as compounds containing variable amounts of water that may be produced by processes such as lyophilisation.
Since the antibiotic compounds of the invention are intended for use in pharmaceutical compositions it will readily be understood that they are each provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure and preferably at least 85%, especially at least 95% pure, particularly at least 98% pure (% are on a weight for weight basis). Impure preparations of the compounds may be used for preparing the more pure forms used in the pharmaceutical compositions; these less pure preparations of the compounds should contain at least 1%, more suitably at least 5% and preferably from 10 to 49% of a compound of the formula (I) or salt thereof.
Preferred compounds of the present invention include: l-(3-phenyl-propanoyl)-azetidin-2-one; 1 -hexanoyl-azetidin-2-one; l-(2-phenyl-ethanoyl)-azetidin-2-one;
10-oxo-10-(2-oxo-azetidin-l-yl)-decanoic acid methyl ester; and 8-oxo-8-(2-oxo-azetidin-l-yl)-octanoic acid methyl ester. 3 ,3-dimethyl- 1 -(2-phenylethanoyl)-azetidin-2-one 3-methyl- 1 -(2-phenylethanoyl)-azetidin-2-one 3-methyl- 1 -(6-phenylhexanoyl)-azetidin-2-one METHODS OF PREPARATION
The present invention provides compounds of formula (I). Compounds of the formula I were prepared via the method outlined in Scheme 1. For this particular example Rl is phenyl, R2 and R3 are both H and n = 2.
Scheme 1
Figure imgf000006_0001
a) 2-tert-butylirnino-2-diethylamino-l,3-dimethyl-perhydro-l,3,2-diazaphosphorine on ploystyrene (BEMP on polystyrene, Fluka), MeCN, 1 h, rt; b) hydrocinnamoyl chloride, 5 h, rt.
Commercially available 2-azetidinone 1, Scheme 1 (Aldrich), was treated with the polymer bound base 2-tert-butylimino-2-diethylamino-l,3-dimethyl- perhydro-l,3,2-diazaphosphorine on ploystyrene (BEMP on polystyrene, Fluka) followed by the addition of the desired acid chloride. In this example hydrocinnamoyl chloride was selected to provide the N-acyl beta-lactam 2. This process is not limited to commercially available acid chlorides as any acid chloride can be prepared from the corresponding acid via standard methods. Such methods include, but are not limited to, treatment with oxalyl chloride or thionyl chloride. In addition, the base utilized in the above example is not limited to the use of BEMP on polystyrene or to the use of polymer bound reagents in general. A variety of soluble bases may also be employed to obtain the desired results. Such suitable bases include NaH, sodium bis(trimethylsilyl)amide, 2-tert-butylimino-2-diethylamino- l,3-dimethyl-perhydro-l,3,2-diazaphosphorine (BEMP) or n-butyl lithium.
Compounds of the formula I bearing dimethyl or methyl substitution at the C-3 position of the azetidinone ring were prepared via the methods outlined in Schemes 2 and 3, respectively. For these particular examples, Rl is phenyl and R2 and R3 are both Me, Scheme 2, or R2 is Me while R3 is H, Scheme 3, and n = 2. Scheme 2
Figure imgf000007_0001
a) i. LDA, THF, ii. Mel; b) MeOH, HC1; c) i. NaH, THF, ii. PhCH2COCl.
Azetidinone 3 (Bioorgαnic and Medicinal Chemistry Letters, 1996, 6(8), 983-986) is treated with 2 equivalents of a strong base such lithium diisopropylamide (LDA), followed by the addition of 2 equivalents of methyl iodide (Scheme 2). The silyl protecting group is then removed under non-nucleophilic conditions using methanol and aqueous HC1. This method affords the dimethyl azetidinone 4. Other alkylating agents can be used in place of methyl iodide to afford alternative dialkylated derivatives. Treatment of 4 with a base such as sodium hydride followed by acylation with the desired acid chloride, in this case phenyl acetyl chloride, provides the desired acyl compound 5. Any desired acid chloride can be used and the scope is not limited to the example shown.
Scheme 3
Figure imgf000007_0002
a) 2-chloro-l-methylpyridinium iodide, triethylamine, MeCN, reflux; b) i. NaH, THF, ii. PhCH2COCl.
Compounds containing a single methyl substituent a the C-3 position of the azetidinone ring may be prepared according to the example outlined in Scheme 3. In this example, 3-aminoisobutyric acid (6) is converted into the azetidinone 7 by treatment with 2-chloro-l-methylpyridinium iodide. In this example, racemic 3- aminoisobutyric acid is used, however, this acid could be utilized in optically active form using either enantiomer if desired. The methyl azetidinone (7) is then converted into the acyl beta-lactam as illustrated in Scheme 2, thus providing 8. Again, any desired acid chloride may be used.
SYNTHETIC EXAMPLES
The invention will now be described by reference to the following examples which are merely illustrative and are not to be construed as a limitation of the scope of the present invention. All temperatures are given in degrees centigrade, and all solvents are highest available purity unless otherwise indicated.
Example 1 Preparation of l-(3-phenyl-propanoyl)-azetidin-2-one
To a solution of 2-azetidinone (0.05g, 0.7 mmol) in acetonitrile (2 mL) in a screwcap vial was added BEMP* on polystyrene (0.38 g, 0.84 mmol of BEMP, Fluka). The reaction was shaken for 1 h at room temperature. To this mixture was added hydrocinnamoyl chloride (0.093 mL, 0.6 mmol) and the reaction was shaken for 5 h at room temperature. The polymer was removed by filtration and washed with methylene chloride. The combined filtrate was concentrated in vacuo to afford the desired product (0.028g, 23%) as a clear oil. LC/MS (ES+) m e 204.0 [M+H]+.
* BEMP: 2-tert-butylimino-2-diethylamino- 1 ,3-dimethyl-perhydro- 1 ,3,2- diazaphosphorine.
Example 2 Preparation of l-hexanoyl-azetidin-2-one
The title compound was prepared according to the procedure described for Example 1 substituting hexanoyl chloride for hydrocinnamoyl chloride. The product was obtained as a yellow oil. LC/MS (ES+) m e 170.0 [M+H]+.
Example 3 Preparation of l-(2-phenyl-ethanoyl)-azetidin-2-one
The title compound was prepared according to the procedure described for Example 1 substituting phenylacetyl chloride for hydrocinnamoyl chloride. The product was obtained, following purification by HPLC, as a white solid. LC/MS (ES+) m/e 190.0 [M+HJ+. Example 4
Preparation of 10-oxo-10-(2-oxo-azetidin-l-yl)-decanoic acid methyl ester
To a solution of 2-azetidinone (O.lg, 1.4 mmol) in acetonitrile (4 mL) in a screwcap vial was added BEMP on polystyrene (0.77 g, 1.69 mmol of BEMP). The reaction was shaken for 1 h at room temperature. To this suspension was added methyl 10-chloro-lO-oxodecanoate (0.28 mL, 1.26 mmol) and the reaction was shaken for 18 h at room temperature. The polymer was removed by filtration and washed with methylene chloride. The combined filtrate was concentrated in vacuo to afford the desired product (0.285g, 76%) as a clear oil. LC/MS (ES+) m/e 270.0 [M+H]+.
Example 5 Preparation of 8-oxo-8-(2-oxo-azetidin-l-yl)-octanoic acid methyl ester
The title compound was prepared according to the procedure described for Example 4 substituting methyl 8-chloro-8-oxooctanoate for methyl 10-chloro-lO- oxodecanoate. The product was obtained as a clear oil. LC/MS (ES+) m/e 242.0 [M+H]+.
Example 6 Preparation of 3,3-dimethyl-l-(2-phenylethanoyl)-azetidin-2-one. a) 3,3-Dimethyl-azetidin-2-one
To a solution of diisopropylamine (0.96 mL, 6.8 mmol) in THF (10 mL) at - 78»C under argon atmosphere was added nBuLi (1.6 M in hexanes, 4.0 mL, 6.3 mmol). The reaction mixture was warmed to 0*C and stirred at that temperature for 20 min. Prior to cooling the mixture to -78«C, a solution of l-(tert-butyl-dimethyl- silanyl)-azetidin-2-one (530 mg, 2.8 mmol) in THF (10 mL) was added via syringe [prepared according to Bioorganic and Medicinal Chemistry Letters, 1996, 6(8), 983-986]. After the mixture was stirred at -78βC for 0.5 h, a solution of methyl iodide (0.97 g, 6.86 mmol) in THF (5 mL) was added. The resulting mixture was warmed to -20#C and stirred for 2 h. The reaction was quenched with HC1 (IN) solution and the product was extracted with EtOAc. The organic extract was washed with H2O, brine, and dried over Na^O^ The solvent was removed in vacuo to afford the crude product. H-^NMR was taken to support the structure. The crude product was used without further purification.
The crude azetidinone was dissolved in MeOH (20 mL) and treated with HC1 (1 N, 3 mL). The resulting mixture was stirred at room temperature for 6 h. The reaction was quenched by NaHCO3 (sat. aq.) addition. The solution was evaporated to dryness and redissolved in CH2C12. The slurry was washed with H2O, brine, dried over Na2SO4 and evaporated to dryness to afford the desired product (94 mg, 31% over 2 steps). This product was used without further purification; Η NMR (CDC13) 3.12 (s, 2H), 1.44 (s, 3H), 1.31 (s, 3H).
b) 3,3-dimethyl-l-(2-phenylethanoyl)-azetidin-2-one
To a solution of 3,3-dimethyl-azetidin-2-one (6a; 94 mg, 0.9 mmol) in THF (2 mL) at 0»C under argon was added NaH (40 mg, 1 mmol). After the resulting mixture was stirred at 0»C for 5 min, phenyl acetyl chloride (0.132 mL, 1 mmol) was added. The reaction mixture was warmed to room temperature and stirred for 2 h (monitored by TLC). The reaction mixture was diluted with H2O, and extracted with EtOAc. The organic extracts were washed with H2O, brine, dried over Na2SO4 and evaporated to dryness in vacuo. Purification by flash column chromatography (silica gel, 20% EtOAc in hexanes) afforded the desired product (50 mg, 25%) as an oil; Η NMR (CDC13) 7.30 (m, 5H), 4.06 (s, 2H), 3.39 (s, 2H), 1.38 (s, 6H); IR 1781, 1700, 1366,1313,1290 cm-1.
Example 7 Preparation of 3-methyl-l-(2-phenylethanoyl)-azetidin-2-one. a) 3-Methyl-azetidin-2-one
To a solution of 2-chloro-l-methylpyridinium iodide (4.11 g, 0.016 mmol) in MeCN (730 mL) was added triethylamine (4 mL, 0.029 mol). The solution was heated to reflux under argon and (DL)-3-aminoisobutyric acid was added in several portions over 3 h. After the addition was complete, the reaction mixture was refluxed for additional 2 h. The solvent was removed in vacuo and the resulting residue was redissolved in CH2C12 and purified by flash column chromatography (silica gel, 10-30% EtOAc in hexanes) to afford the desired product (430 mg, 43%) as a liquid; Η NMR (CDC13) 6.23 (bs, 1H), 3.44 (t, J=5.03 Hz, 1H), 3.24 (m, 1H), 2.92 (m, 1H), 1.30 (d, J=7.75 Hz, 3H).
b) 3-Methyl-l -(2-phenylethanoyl)-azetidin-2-one
The title compound was prepared according to the procedure for 6b, above, with the modification of substituting 7a in place of 6a. The product was obtained (16 mg, 25%) as an oil; Η NMR (CDC13) 7.30 (m, 5H), 4.04 (s, 2H), 3.73 (m, 1H), 3.30 (m, 1H), 3.22 (m, 1H), 1.37 (d, J=7.38 Hz, 3H); IR 1782, 1700, 1366, 1317, 1300 cm-1.
Example 8 Preparation of 3-methyl-l-(2-phenylhexanoyl)-azetidin-2-one.
To a solution of 6-phenylhexanoic acid (0.25 g, 1.29 mmol) in CH2CI2 (3 mL) was added oxalyl chloride (0.96 mL, 1.94 mmol) and a drop of DMF. The resulting mixture was stirred at room temperature for 1 h. A separate flask was charged with a solution of 3-methyl-azetidin-2-one (7a; 100 mg, 1.18 mmol) in THF (3 mL) and cooled to 0°C Sodium hydride (52 mg, 1.29 mmol) was added, and the resulting mixture was stirred for 10 min while being allowed to warm to room temperature. To this mixture was added the previously prepared acid chloride solution and the resulting mixture was stirred at room temperature for 2 h. The reaction mixture was partitioned between EtOAc and H2O and the organic extracts were washed with H2O, brine, dried over Na2SO4 and evaporated to dryness. Purification by flash column chromatography (silica gel, EtOAc/hexanes) to afforded the desired product (35 mg, 27%) as a solid; Η NMR (CDC13) 7.26 (m, 2H), 7.16 (m, 3H), 3.72 (m, 1H), 3.27 (m, 1H), 3.19 (m, 1H), 2.69 (t, J=7.44 Hz, 2H), 2.61 (t, J=7.62 Hz, 2H), 1.63 (m, 4H), 1.40 (m, 5H); IR 1782, 1700, 1387, 1308 cm-1.
Biological Assay:
FabH was assayed in a coupled format using his-tagged S.aureus FabD, and acyl carrier protein (ACP) purchased from Sigma. Lyophilized ACP was reduced using β-mercaptoethanol in phosphate buffer. Malonyl-CoA, and FabD were added to the reduced ACP, thus generating malonyl-ACP. After the FabD reaction reached equilibrium, [^C] acetyl-CoA and inhibitors were added, and the reaction started by the addition of FabH. TCA precipitation and filtration was used to separate [^C] acetyl-CoA substrate from [l^C] acetoacetyl-ACP product.
Secondary and tertiary screens of suitable reproducibility, sensitivity, throughput and analytical power to progress primary screen hits are characterized, validated and in current use. Compounds are evaluated against purified mammalian fatty acid biosynthetic enzymes, E.coli FabH, FabB and a human lung cell cytotoxicity assay.
In addition, whole-cell antibacterial activity is determined against a range of clinically relevant wild type and efflux impaired bacteria using standard and novel fluorescence based technologies. The FabH assay has been thoroughly characterized kinetically and a reaction mechanism proposed. Detailed studies have generated novel data about mechanism of inhibition by tool compounds, including thiolactomycin. Screens in use are of direct relevance to the therapeutic goal - eradication of bacteria from sites of infection ('cure5). Several state-of-the-art animal models of bacterial infection are available, meaningful and in current use in this and numerous other studies at SB. Extensive prior experience with known antibacterials confirm that bacterial kill in vitro and in animal models is an excellent indicator of bacterial kill in vivo and cure of infection.
The present invention also provides a pharmaceutical composition, which comprises a compound of formula (I) or a pharmaceutically acceptable salt or in vivo hydrolysable ester thereof, and a pharmaceutically acceptable carrier. The compositions of the invention include those in a form adapted for oral, topical or parenteral use and may be used for the treatment of bacterial infection in mammals including humans.
The antibiotic compounds according to the invention may be formulated for administration in any convenient way for use in human or veterinary medicine, by analogy with other antibiotics.
The composition may be formulated for administration by any route, such as oral, topical or parenteral, especially oral. The compositions may be in the form of tablets, capsules, powders, granules, lozenges, creams or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
The topical formulations of the present invention may be presented as, for instance, ointments, creams or lotions, eye ointments and eye or ear drops, impregnated dressings and aerosols, and may contain appropriate conventional additives such as preservatives, solvents to assist drug penetration and emollients in ointments and creams.
The formulations may also contain compatible conventional carriers, such as cream or ointment bases and ethanol or oleyl alcohol for lotions. Such carriers may be present as from about 1% up to about 98% of the formulation. More usually they will form up to about 80% of the formulation.
Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinylpyrollidone; fillers, for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricants, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants, for example potato starch; or acceptable wetting agents such as sodium lauryl sulphate. The tablets may be coated according to methods well known in normal pharmaceutical practice. Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may contain conventional additives, such as suspending agents, for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and, if desired, conventional flavouring or colouring agents.
Suppositories will contain conventional suppository bases, e.g. cocoa-butter or other glyceride. For parenteral administration, fluid unit dosage forms are prepared utilizing the compound and a sterile vehicle, water being preferred. The compound, depending on the vehicle and concentration used, can be either suspended or dissolved in the vehicle. In preparing solutions the compound can be dissolved in water for injection and filter sterilized before filling into a suitable vial or ampoule and sealing. The solution preferably contains a buffer (such as phosphate) to keep the pH in the range of about 3.5 to 7. DMSO or alcoholic solvents may also be present (at concentrations such as 0.01 to 10 mL/liter) to aid solubility and penetration of the compound of Formula (I) Advantageously, agents such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle. To enhance the stability, the composition can be frozen after filling into the vial and the water removed under vacuum. The dry lyophilized powder is then sealed in the vial and an accompanying vial of water for injection may be supplied to reconstitute the liquid prior to use. Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilization cannot be accomplished by filtration. The compound can be sterilized by exposure to ethylene oxide before suspending in the sterile vehicle. Advantageously, a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the compound.
The compositions may contain from 0.1% by weight, preferably from 10-60% by weight, of the active material, depending on the method of administration. Where the compositions comprise dosage units, each unit will preferably contain from 50-500 mg of the active ingredient. The dosage as employed for adult human treatment will preferably range from 1 to 140 mg/kg of body weight, depending on the route and frequency of administration.. Inhibitors of β-ketoacyl-ACP Synthase (FabH) can be administered by injection in solutions either intravenously, intramuscularly, intraperitoneally, or orally. The solution preferably contains a buffer (such as phosphate) to keep the pH in the range of about 3.5 to 7. DMSO or alcoholic solvents may also be present (at concentrations such as 0.01 to 10 mL/liter) to aid solubility and penetration of the β- ketoacyl-ACP Synthase (FabH) inhibitor. No unacceptable toxicological effects are expected when a compound of formula (la) or a pharmaceutically acceptable salt or in vivo hydrolysable ester thereof is administered in the above-mentioned dosage range.
The compound of formula (I) may be the sole therapeutic agent in the compositions of the invention or a combination with other antibiotics or compounds which enhance the antibacterial activity of a compound of formula (I)may be employed.
The antibiotic compounds of the present invention are active against a wide range of organisms including both Gram-negative organisms such as Escherichia coli and Klebsiella pneumoniae and Gram-positive organisms such as Staphylococcus aureus, Streptococcus pneumoniae, Enterococcus faecalis and Enterococcus faecium, including isolates resistant to existing antibiotics.
All publications, including but not limited to patents and patent applications, cited in this specification are herein incorporated by reference as if each individual publication were specifically and individually indicated to be incorporated by reference herein as though fully set forth.
The above description fully discloses the invention including preferred embodiments thereof. Modifications and improvements of the embodiments specifically disclosed herein are within the scope of the following claims. Without further elaboration, it is believed that one skilled in the area can, using the preceding description, utilize the present invention to its fullest extent. Therefore the Examples herein are to be construed as merely illustrative and not a limitation of the scope of the present invention in any way. The embodiments of the invention in which an exclusive property or privilege is claimed are defined as follows.

Claims

What is claimed is:
1. A method of treating bacterial infections by administering to a patient in need thereof an effective amount of a compound of Formula (I):
Figure imgf000016_0001
wherein:
Rl is selected from the group consisting of Me, CO2R4, COR4, CONR5R6, CH(OH)R4, aryl, substituted aryl, heteroaryl and substituted heteroaryl; R2 represents H, or Cl - C4 alkyl; R3 represents H, or Cl - C4 alkyl; R4 represents Cl - C4 alkyl;
R5 and R6 are, independently, H, lower alkyl or together form a 5 or 6 membered heterocycle selected from the group consisting of piperidine, morpholine, piperazine, N-methyl piperazine and hydroxy piperidine; and n is an integer from 1 to 12; or a salt thereof or a pharmaceutically acceptable complex thereof.
2. A method according to claim 1 wherein the compound is selected from the group consisting of: l-(3-phenyl-propanoyl)-azetidin-2-one; 1 -hexanoyl-azetidin-2-one; l-(2-phenyl-ethanoyl)-azetidin-2-one;
10-oxo-10-(2-oxo-azetidin-l-yl)-decanoic acid methyl ester; and 8-oxo-8-(2-oxo-azetidin-l-yl)-octanoic acid methyl ester.
3. 10-oxo-10-(2-oxo-azetidin-l-yl)-decanoic acid methyl ester.
PCT/US2001/029490 2000-09-22 2001-09-20 Fatty acid synthase inhibitors WO2002024197A1 (en)

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US10399951B2 (en) 2013-03-13 2019-09-03 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10793554B2 (en) 2018-10-29 2020-10-06 Forma Therapeutics, Inc. Solid forms of 4-(2-fluoro-4-(1-methyl-1H-benzo[d]imidazol-5-yl)benzoyl)piperazin-1-yl)(1-hydroxycyclopropyl)methanone
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US10399951B2 (en) 2013-03-13 2019-09-03 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10450286B2 (en) 2013-03-13 2019-10-22 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10457655B2 (en) 2013-03-13 2019-10-29 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10472342B2 (en) 2013-03-13 2019-11-12 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10800750B2 (en) 2013-03-13 2020-10-13 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10995078B2 (en) 2013-03-13 2021-05-04 Forma Therapeutics, Inc. Compounds and compositions for inhibition of FASN
US10875848B2 (en) 2018-10-10 2020-12-29 Forma Therapeutics, Inc. Inhibiting fatty acid synthase (FASN)
US11299484B2 (en) 2018-10-10 2022-04-12 Forma Therapeutics, Inc. Inhibiting fatty acid synthase (FASN)
US10793554B2 (en) 2018-10-29 2020-10-06 Forma Therapeutics, Inc. Solid forms of 4-(2-fluoro-4-(1-methyl-1H-benzo[d]imidazol-5-yl)benzoyl)piperazin-1-yl)(1-hydroxycyclopropyl)methanone
US11267805B2 (en) 2018-10-29 2022-03-08 Forma Therapeutics, Inc. Solid forms of (4-(2-fluoro-4-(1-methyl-1H-benzo[d]imidazol-5-yl)benzoyl) piperazine-1-yl)(1-hydroxycyclopropyl)methanone

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