Solid phase and combinatorial synthesis of substituted 1,2,3-triazoles and of arrays of substituted 1,2,3-triazoles
Background of the invention
The present invention relates to the field of solid phase chemistry. More specifically, the invention provides a method for solid phase and combinatorial synthesis of organic compounds, and most particularly, a therapeutically important class of compounds, namely diversely substituted 1 ,2,3-triazoles.
Obtaining a better understanding of the important factors in molecular recognition in conjunction with developing new therapeutic agents is a major focus of scientific research. Methods have recently been developed, which permit the fast generation of large arrays of pure compounds or of mixtures of compounds, which are then screened against a specific receptor or enzyme. However, there are still only few methods available for the fast synthesis of organic compounds other than peptides or oligonucleotides. The latter tend to have very short clearing times, so that their utility as bioavailable therapeutic agent will be limited. For this reason, organic compounds of potential therapeutic interest are today still synthesized and evaluated one at a time, thus dramatically limiting the number of derivatives which can be screened. It is therefore of utmost importance to develop new synthetic methodology, which permits the fast synthesis of bioavailable organic compounds of potential therapeutic interest, such as small heterocyclic compounds. This may be achieved by developing a solid phase synthesis for such compounds. Experience has shown, that solid phase synthesis, once implemented and optimized, is amenable to automatization and can yield products of high purity without the need of any tedious and time consuming purification step.
The realization of known synthetic reactions on a solid support may not always be possible and may require careful optimization of the reaction conditions. Although solid phase synthesis, once implemented and optimized, offers many advantages if compared to syntheses in liquid phase, the finding of the appropriate reaction conditions may be a difficult task. This may be due to the limited choice of solvents which may be used with some types of supports, as well as the difficulty of precise temperature adjustment in arrays of reactors for solid phase synthesis. Additionally, the classical tools for the quality control of intermediates (infrared spectroscopy, nuclear magnetic resonance spectroscopy, mass spectrometry) may only be of
limited use in solid phase synthesis. For these reasons, the implementation of known reactions to a solid support may often require a major effort and time investment.
The synthetic sequence disclosed in this invention is a variant of related triazole syntheses (ref. 11-19), adapted and optimized for its realization on a solid support.
Terminology
The following terms are intended to have the following, general meanings:
1. Substrate: refers to any insoluble or partially insoluble material, to which compounds may be covalently attached. Substrates may be selected from the group consisting of any kind of organic or inorganic polymeric or oligomeric 5 compound, e.g. polystyrene with different grades of crosslinking, polyethylene glycol (PEG), polyethylene glycol attached to polystyrene (e.g. TentaGel), polyacrylamides, polyamides, polysaccharides or silicates.
2. Linker: a molecule with at least two reactive sites, which permit its covalent o attachment to other molecules or to a substrate. Either the bond of the linker to the substrate or the bond of the linker to other molecules attached to it or the linker itself must be cleavable upon selective exposure to an activator such as a selected chemical activator or other specific conditions, e.g. by treatment with a strong acid or by exposure to electromagnetic radiation or by metal catalysis. 5
3. Array: A collection of N single compounds or N mixtures of compounds with a common structural element, synthesized simultaneously in a parallel fashion using the same synthetic reaction sequence. The precise structure of a single compound within an array of compounds or the components of a mixture within an array of o mixtures is determined by the sequence of reactants which gave rise to this specific compound or mixture and can be deduced from the recorded reaction-protocol. The spatial arrangement of the array is irrelevant.
4. Triazole: Five-membered heteroaromatic compound containing three nitrogen- 5 atoms in the five-membered ring.
5. Protecting group: A material which is chemically bound to a molecule or a substrate and which may be removed upon selective exposure to an activator such as a selected chemical activator or other specific conditions, e.g. by treatment with a strong acid or by exposure to electromagnetic radiation or by metal catalysis.
6. Combinatorial synthesis: an ordered strategy for parallel synthesis of arrays of single compounds or mixtures, by sequential addition of reagents.
7. Receptor: A material that has an affinity for a given ligand. Receptors may be naturally-occurring or synthetic molecules or aggregates of molecules. Also, they can be employed in their unaltered state or as aggregates with other species. Receptors may be attached, covalently or non-covalently, to a binding material or a substrate, either directly or via a linking substance. Examples of receptors which can be employed by this invention include, but are not restricted to, antibodies, 5 monoclonal antibodies and antisera reactive with specific antigenic determinants (such as viruses, cells or other materials), cell membrane receptors, drugs, oligonucleotides, polynucleotides, nucleic acids, peptides, cofactors, small organic molecules, lectins, sugars, oligosaccharides, cells, cellular membranes, organelles, microorganism receptors, enzymes, catalytic polypeptides, hormone receptors, 0 primary metabolite receptors such as carbohydrate receptors, nucleotide receptors or lipid receptors and secondary metabolite receptors such as opiate receptors, prostaglandine receptors, etc.
8. Abbreviations: The following frequently used abbreviations are intended to have 5 the following meanings:
AcOH: glacial acetic acid DCM: dichloromethane, methylenechloride DMF: N,N-dimethyl formamide o FMoc: fluorenylmethyloxycarbonyl R: organic radical TFA: trifluoroacetic acid THF: tetrahydrofurane Ts: p-toluenesulfonyl
Summary of the invention
An improved method for the synthesis of therapeutically useful compounds is provided by virtue of the present invention. The invention provides a rapid approach for combinatorial synthesis and screening of arrays of triazole derivatives as a therapeutically important class of compounds. It provides a solid phase synthesis of these derivatives, which eliminates purification and isolation steps and thus highly increases synthesis efficiency. This patent disclosure also describes an important extension of solid phase synthesis methods to nonoligomeric organic compounds.
A further understanding of the nature and advantages of the invention may be realized by reference to the remaining portions of the specification.
Description
The application of the present invention is the rapid preparation and screening, preferably in parallel and simultaneous fashion, of a large number of differently substituted 1 ,2,3-triazoles having the general formula I
I wherein A is a hydrogen atom or a group of formula
wherein R
4 is alkylene optionally substituted with hydrogen, alkyl, aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, dialkylamino, arylalkylamino, diarylamino or halogen;
R5 is hydrogen, alkyl optionally substituted with hydroxy, halogen, cyano, alkoxy, aryloxy, dialkylamino, arylalkylamino or diarylamino; or aralkyl;
R4 and R5 may be covalently linked to each other by a covalent bond or an additional alkylene group R4, preferentially giving rise to a fragment of the type shown below
wherein n and m are integers between 0 and 15, preferentially 0 and 3;
R6 is hydrogen, alkyl, alkyl substituted with hydroxy, alkoxy, aryloxy, alkylthio, arylthio, dialkylamino, arylalkylamino or diarylamino; aralkyl, aryl, aryl substituted with alkyl, aryl, heteroaryl, halogen, alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl;
R1 is hydrogen, alkyl optionally substituted with hydroxy, halogen, cyano, alkoxy, aryloxy, dialkylamino, arylalkylamino or diarylamino; or aralkyl;
R1 may be covalently linked to R4, R5 and/or R6, in which case -R1-R4- represents low alkylene, preferentially methylene, ethylene or propylene, unsubstituted or substituted with alkyl, hydroxy, alkoxycarbonyl, alkoxy or dialkylamino, -R1-R5- represents ethylene or propylene, unsubstituted or substituted with alkyl, hydroxy, alkoxy or dialkylamino, and/or -R1-Rθ- represents methylene, propylene or butylene unsubstituted or substituted with alkyl, hydroxy, alkoxycarbonyl, alkoxy or dialkylamino;
R2 is alkyl optionally substituted with aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, dialkylamino, arylalkylamino, diarylamino, halogen or aminocarbonyl; aryl optionally substituted with alkyl, aryl, heteroaryl, halogen, alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl; heteroaryl optionally substituted with alkyl, aryl, heteroaryl, halogen,
alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl; and
R3 is alkyl optionally substituted with aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, amino, dialkylamino, arylalkylamino, diarylamino or halogen; and pharmaceutically acceptable salts thereof;
or having the general formula II
II wherein S is a substrate,
L is a chemical bond or a linker,
A is a chemical bond or a group of formula
wherein R
4 is alkylene optionally substituted with hydrogen, alkyl, aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, dialkylamino, arylalkylamino, diarylamino or halogen;
R5 is hydrogen, alkyl optionally substituted with hydroxy, halogen, cyano, alkoxy, aryloxy, dialkylamino, arylalkylamino or diarylamino; or aralkyl;
R
4 and R
5 may be covalently linked to each other by a covalent bond or an additional alkylene group R
4, preferentially giving rise to a fragment of the type shown below
wherein n and m are integers between 0 and 15, preferentially 0 and 3;
R6 is hydrogen, alkyl, alkyl substituted with hydroxy, alkoxy, aryloxy, alkylthio, arylthio, dialkylamino, arylalkylamino or diarylamino; aralkyl, aryl, aryl substituted with alkyl, aryl, heteroaryl, halogen, alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl;
R1 is hydrogen, alkyl optionally substituted with hydroxy, halogen, cyano, alkoxy, aryloxy, dialkylamino, arylalkylamino or diarylamino; or aralkyl;
R1 may be covalently linked to R4, R5 and/or R6, in which case -R1-R4- represents low alkylene, preferentially methylene, ethylene or propylene, unsubstituted or substituted with alkyl, hydroxy, alkoxycarbonyl, alkoxy or dialkylamino, -R1-R5- represents ethylene or propylene, unsubstituted or substituted with alkyl, hydroxy, alkoxy or dialkylamino, and/or -R1-R6- represents methylene, propylene or butylene unsubstituted or substituted with alkyl, hydroxy, alkoxycarbonyl, alkoxy or dialkylamino;
R2 is alkyl optionally substituted with aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, dialkylamino, arylalkylamino, diarylamino, halogen or aminocarbonyl; aryl optionally substituted with alkyl, aryl, heteroaryl, halogen, alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl; heteroaryl optionally substituted with alkyl, aryl, heteroaryl, halogen, alkoxy, aryloxy, dialkylamino, alkylarylamino, diarylamino, halogen, cyano, alkoxycarbonyl or aminocarbonyl; and
R3 is alkyl optionally substituted with aryl, heteroaryl, alkoxy, aryloxy, cyano, hydroxy, dialkylamino, arylalkylamino, diarylamino or halogen; and
pharmaceutically acceptable salts thereof.
Presently in drug development, high throughput screening is playing a key role. High throughput screening generally incorporates automation and robotics, thus making it possible to screen thousands of compounds in one or more bioassays in a short period of time. This technique has created the need for an automated production of large numbers of different compounds for being screened. A robotic, fully automated system for the production and screening of highly diverse compounds as potential lead-candidates will dramatically speed up the discovery and optimization of new leads for all types of human diseases.
Traditionally, new compounds for lead-discovery or structural analogues for lead- optimization have been synthesized by multiple step linear syntheses. Linear syntheses involve the sequential reactions of several separate reactants in order to obtain the final product. Linear syntheses require the isolation, purification and characterization by spectroscopic and other analytical tools of the intermediate reaction products. Such a linear synthesis is therefore a very time consuming process, which requires a high skill in the synthetic organic chemical art. Since this traditional way of producing compounds is too inefficient for fully exploiting the screening-potential of presently available systems for high throughput screening, synthetic methodology is required, which permits the automated synthesis of large numbers of different compounds.
Parallel solid phase synthesis is today one of the fastest ways of producing arrays of single compounds or arrays of defined mixtures of compounds. However, there are still only few methods available for the parallel solid phase synthesis of organic compounds other than peptides or oligonucleotides. A principal disadvantage associated with peptidic or other bio-oligomeric leads is their low metabolic stability, due to in vivo proteolysis. For this reason, other type of compounds with a higher metabolic stability would be more attractive as leads. Of special interest in this context are small heterocyclic and heteroaromatic compounds, which have been proven to be very useful in many applications. Also as drugs for the treatment of different human metabolic disorders, small heterocyclic compounds have played and are playing a decisive role. For this reason, the solid phase synthesis of heterocyclic compounds is a highly demanded technology, which will be extremely valuable for the fast production of large numbers of potential leads for high volume throughput screening.
Triazoles are important core structures for biologically active compounds. They have been used in terms of nucleoside-analogues as antiviral agents and as purine nucleoside phosphorylase inhibitors (Comprehensive Medicinal Chemistry, Sammes, P. G. Ed.; Vol. 2, pp. 322, 460; Pergamon Press, 1990). Additionally, triazolodiazepines have been shown to be cholecystokinine antagonists (Bock, M. G. et al., J. Med. Chem. 1988, 31, 176) and platelet activating factor antagonists (Kornecki, E.; Ehrlich, Y. H.; Lenox, R. H. Science (Washington D.C), 1984, 226, 1454). Triazoles have also been used as adenosine antagonists (Trivedi, B. K.; Bruns, R. F. J. Med. Chem. 1988, 31, 1011), as anticonvulsants (references 20-22), as muscarinic agonists (reference 19), as antibiotics, such as cefatrizine, and may eventually be used as peptide mimics (Borg, S.; Estennebouhtou, G.; Luthman, K.; Csoregh, I.; Hesselink, W.; Hacksell, U. J. Org. Chem. 1995, 60, 3112-3120). The use of substituted 1 ,2,3-triazoles as peptide mimics has not yet been thoroughly investigated but it could dramatically increase the number of possible therapeutic applications of this class of compounds.
Many more 1,2,3-triazoles than those described so far may be postulated, however, to be potential drug candidates. To achieve the preparation and screening of a large number of compounds with triazole-core-structure, the present invention provides a solid phase synthesis for 1 ,2,3-triazoles in which variable substituent groups are independently attached to a common central triazole ring. The generally recognized advantages of solid phase synthesis are the absence of purification steps of intermediates or the final product, as well as the possibility of automation. Due to these features, a solid phase synthesis of 1,2,3-triazoles dramatically increases the synthesis efficiency for these therapeutically important compounds.
An overall illustration of the solid phase synthesis of 1 ,2,3-triazoles is shown in reaction Scheme I.
Scheme 1
In the following description of this invention, R is intended to be an organic radical. Alkyl is intended to mean lower straight, cyclic, fused or branched alkyl having 0 to 15 carbon atoms, preferentially 1 to 6 carbon atoms. Aryl is intended to mean phenyl or phenyl substituted with alkyl or phenyl, or phenyl fused with cycloalkyl, or polycyclic aromatic systems such as naphthyl, anthracenyl, phenanthrenyl, fluorenyl, etc. Alkylene is intended to mean lower straight, cyclic, fused or branched alkylene having 0 to 15 carbon atoms, preferentially 1 to 6 carbon atoms. Heteroaryl is intended to mean any of the possible isomeric, unsubstituted or alkyl- substituted pyrrolyl, furyl, thienyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, thiazolyl, oxadiazolyl, thiadiazolyl, pyridyl, pyrazinyl, pyrimidinyl and pyridazinyl, as well as the corresponding benzo and dibenzo derivatives or other fused ring- systems thereof. Heteroaryl is also intended to mean the partially or fully hydrogenated derivatives of the heterocyclic systems enumerated above. Alkoxy is intended to mean -O-alkyl and aryloxy is intended to mean -O-aryl. Cyano is intended to mean -CN, hydroxy is intended to mean -OH, amino is intended to mean -NH2 and nitro is intended to mean -NO2. Dialkylamino is intended to mean -
N(alkyl)2. Alkylarylamino is intended to mean -N(alkyl)(aryl) and diarylamino is intended to mean -N(aryl)2. Halogen is intended to mean -F, -Cl, -Br and -I. Aralkyl is intended to mean -alkylene-aryl. Alkylthio is intended to mean -S-alkyl and arylthio is intended to mean -S-aryl. Alkoxycarbonyl is intended to mean -CO-O- alkyl and aminocarbonyl is intended to mean -CO-N(alkyl)2, -CO-N(alkyl)(aryl) or - CO-N(aryl)2. Acylamino is intended to mean -N(alkyl)-CO-alkyl or -N(alkyl)-CO-aryl. A leaving group is intended to be a group or atom capable of existing in solution as a negatively charged species, or a positively charged group or atom.
In this synthesis, an organic molecule of the general formula HN(R5)-R4-N(R1)H or HO2C-CH(R6)-N(R1)P, P being a protecting group, is attached to a substrate S via a linker L by well precedented methods, optionally followed by a deprotection step, in such a way, that a free primary or secondary amino group is generated on the substrate.
The substrate may be any insoluble or partially insoluble material, to which compounds may be covalently attached. Preferentially, the substrates may be selected from the group consisting of polystyrene, polyethylene glycol (PEG), polyethylene glycol attached to polystyrene (e.g. TentaGel), polyamides, polysaccharides and silicates. Depending on the type of substrate chosen, different types of solvents or protecting groups may be used.
Most preferentially, in the case of diamines attached to a substrate, a polystyrene resin or TentaGel resin, covalently attached to a Wang linker (Wang, S. J. Am. Chem. Soc. 1973, 95, 1328-1333), may first be treated with phosgene or a phosgene equivalent such as 4-nitrophenyl chloroformate or carbonyldiimidazole, in a suitable solvent such as DCM, THF, toluene, DMF or mixtures thereof, optionally in the presence of a base, such as pyridine, and then with an excess of a diamine, such as ethylenediamine, N.N'-dimethylethylenediamine, N,N'-diethyl- ethylenediamine, N,N'-dipropylethylenediamine, N,N'-diisopropylethylenediamine,
N.N'-dibutylethylenediamine, N,N'-dihexylethylenediamine, N.N'-dibenzylethylene- diamine, N,N'-di(1-hydroxymethyl)propylethylenediamine, piperazine, 2-methyl- piperazine, 2,6-dimethylpiperazine, 2,5-dimethylpiperazine, 1 ,4-diazacycloheptane, 6-hydroxy-1 ,4-diazacycloheptane, 6-acetoxy-1 ,4-diazacycloheptane, 1 ,2-diamino- propane, 1 ,3-diaminopropane, 1 ,3-diamino-2-propanol, N,N'-dimethyl-1 ,3-propane- diamine, N,N'-diethyl-1 ,3-propanediamine, 2,2-dimethyl-1 ,3-propanediamine, N,N',2-trimethyl-1 ,3-propanediamine, 1 ,4-diaminobutane, N,N'-dipropyl-1 ,4-butane-
diamine, N,N'-diethylbutane-1 ,4-diamine, N,N'-dimethyl-2-butene-1 ,4-diamine, N,N -diethyl-2-butene-1 ,4-diamine, N,N'-diethyl-2-butyne-1 ,4-diamine, 1 ,5-diamino- pentane, 1,3-diaminopentane, 1 ,2-diaminocyclohexane, 1 ,3-diaminocyclohexane, 1 ,4-diaminocyclohexane, 1 ,3-bis(aminomethyl)cyclohexane, 1 ,4-bis(aminomethyl)- cyclohexane, 4,4'-bipiperidine, 1-[2-(3-pyridylmethylamino)ethyl]-piperazine, 1-(2- aminoethyl)piperazine, 4-aminomethylpiperidine, 3-(4-aminobutyl)piperidine, 5-ami- no-2,2,4-trimethyl-1-cyclopentanemethylamine, 4,4'-diaminodicyclohexylmethane, o-xylylenediamine, m-xylylenediamine, p-xylylenediamine or isophoronediamine, to give a substrate-bound diamine of the general formula [polystyrene]-[Wang linker]- O-CO-N(R5)-R4-N(R1)H. The preparation of such substrate-bound diamines has occasionally been described in literature (e.g. Hiroshige, M.; Hauske, J. R.; Zhou, P. J. Am. Chem. Soc. 1995, 117, 11590-11591 ; Zaragoza, F. Tetrahedron Lett. 1995, 36, 8677-8678; Dixit, D. M.; Leznoff, C. C. Israel J. Chem. 1978, 17, 248-252; Dixit, D. M.; Leznoff, C. C. J. Chem . Soc. , Chem. Commun. 1977, 798-799; Kaljuste, K.; Unden, A. Tetrahedron Lett. 1995, 36, 9211-9214).
In the case of protected amino acids attached to a substrate, a polystyrene resin or TentaGel, covalently attached to a Rink linker (H. Rink, Tetrahedron Lett. 1987, 28, 3787), may be acylated with a derivative of a side-chain and nitrogen-protected (e.g. FMoc) amino acid, such as FMoc-glycine, FMoc-phenylglycine, FMoc- sarcosine, FMoc-alanine, FMoc-valine, FMoc-norvaline, FMoc-leucine, FMoc- isoleucine, FMoc-norleucine, FMoc-penicillamine, FMoc-arginine, FMoc- asparagine, FMoc-aspartic acid, FMoc-citrulline, FMoc-glutamine, FMoc-glutamic acid, FMoc-proline, FMoc-hydroxyproline, FMoc-phenylalanine, FMoc-tyrosine, FMoc-tryptophan, FMoc-threonine, FMoc-histidine, FMoc-serine, FMoc-cysteine, FMoc-methionine, FMoc-lysine, FMoc-statine or FMoc-ornithine, by well established procedures, for example with the in situ generated symmetric anhydride of these amino acid derivatives. Most of the FMoc-amino acids and some of the resulting substrate-bound FMoc-amino acids are commercially available. After this acylation o step, the nitrogen protecting group may be removed by well established methods, such as treatment with piperidine in DMF in the case of an FMoc-protecting group, to give a substrate-bound amino acid of the general formula [polystyrene or Tentagel]-[Rink linker]-NH-CO-C(R6)H-N(R1)H. Also non-natural amino acid derivatives may be attached to a substrate-bound Rink linker and converted, by an 5 optional deprotection step, into support-bound amino acids of the type 1 (scheme 1).
The substrate bound primary or secondary amine 1 may then be acylated with an appropriate 3-oxoalkanoic acid derivative of the general formula R2-CO-CH2-CO-X, X being a leaving group, preferentially with the phenyl ester (X = OPh) or 4- 5 nitrophenyl ester, in an appropriate solvent such as DMF, DCM, THF, toluene or mixtures thereof. Alternatively, other, in situ generated or isolated derivatives of 3- oxoalkanoic acids may be used as acylating reagents, such as the symmetric anhydride or mixed anhydrides derived from alkyl chloroformates and the corresponding 3-oxoalkanoic acid, or the imidazolide or other types of activated o esters, obvious to those skilled in the art.
Other than commercially available 3-oxoalkanoic acids may be used in this synthetic sequence, since numerous 3-oxoalkanoic acids can easily be prepared, for instance from ketones (e.g. Bottaccio, G.; Chiusoli, G. P. Chem. Commun. 5 1966, 618; Pelletier, S. W.; Chappell, R. L; Parthasarathy, P. C; Lewin, N. J. Org. Chem. 1966, 31, 1747-1752; Corey, E. J.; Chen, R. K. H. J. Org. Chem. 1973, 38, 4086; Jp. Pat. 8 203 663 (1982), Mitsui Toatse Chemicals, Chem. Abstr. 1982, 96, 199 101).
0 Alternatively, a 3-oxoalkanoic acid derivative may be directly reacted with a Ring linker attached to a substrate, to give a derivative of the general formula [substrate]- [Rink linker]-NH-CO-CH2-CO-R2. This corresponds to the case, where A (scheme 1) is a chemical bond and A is hydrogen.
5 The group R2 may be straight or branched alkyl groups, such as methyl, ethyl, propyl, isopropyl, butyl, including n-butyl, sec-butyl, iso-butyl, tert-butyl, pentyl, hexyl, heptyl, octyl, etc., and their variants, straight or branched alkylene chains such as methylene, 1 ,2-ethylene, 1 ,1-ethylene, propylene, etc. linked to hydrogen, cycloalkyl groups, substituted or unsubstituted aryl groups such as phenyl, 0 naphthyl, biphenylyl or monovalent radicals of substituted or unsubstituted heterocycles and heteroaromatics such as pyridyl, thienyl, pyrrolyl, furyl, piperidinyl, pyrrolidinyl, etc. Additionally, R2 may be substituted or unsubstituted aryl groups or substituted or unsubstituted heterocycles or heteroaromatics. All these groups may also be substituted with functional groups such as F, Cl, Br, I, CONR2, CO2R, CN, 5 NO2, SR, SOR, SO2R, SO2NR2, OR or NR2, R being hydrogen, low alkyl or aryl.
The resulting, substrate-bound 3-oxoamide 2 may then be treated with an excess of a primary amine of the general formula R3-NH2 in the presence of a water-removing agent, preferentially a trialkyl orthoformate, to yield an enamine 3.
Preferred primary amines of the general formula R3-NH2 are amines, where R3 is straight or branched alkyl groups, such as methyl, ethyl, propyl, isopropyl, butyl, including n-butyl, sec-butyl, iso-butyl, tert-butyl, pentyl, hexyl, heptyl, octyl, etc., and their variants, straight or branched alkylene chains such as methylene, 1 ,2- ethylene, 1 ,1-ethylene, propylene, etc. linked to hydrogen, cycloalkyl groups, substituted or unsubstituted aryl groups such as phenyl, naphthyl, biphenylyl or monovalent radicals of substituted or unsubstituted heterocycles and heteroaromatics such as pyridyl, thienyl, pyrrolyl, furyl, piperidinyl, pyrrolidinyl, etc. All these groups may also be substituted with functional groups such as -F, -Cl, -Br, -I, -N(R)CONR2, -N(R)CO2R, -CONR2, -CO2R, -CN, -NO2, -SR, -SOR, -SO2R, - SO2NR2, -OR or -NR2, R being hydrogen, low alkyl or aryl.
In some cases, the enamine-formation also occurs in the absence of a dehydrating agent, especially if DMF is chosen as solvent. The most appropriate solvent will depend on the type of substrate chosen. For the case of polystyrene, a mixture of DMF with the trialkyl orthoformate, preferentially triethyl orthoformate or trimethyl orthoformate may be an appropriate solvent/dehydratant system.
The resulting enamine 3 may then be treated with a sulfonyl azide and a base, preferentially p-toluenesulfonyl azide, methanesulfonyl azide or 4-acetamido benzenesulfonyl azide in the presence of a tertiary amine, preferentially diisopropylethylamine, thereby inducing cyclization to the triazole 4. The most appropriate solvent will depend on the type of substrate chosen. This reaction may be carried out in acetonitrile, DMF or protic solvents, but if the substrate is a polystyrene-based resin, then DMF may be an appropriate solvent.
Cleaving of the linker of the product 4 may release the triazole derivative 5 into solution. Cleavage conditions will depend upon the type of substrate and linker chosen. E. g., in the case of a polystyrene resin with a Wang linker or a Rink amide linker, treatment of the support-bound triazole 4 with TFA may lead to a cleavage of the linker. These strongly acidic reaction conditions do not lead to a destruction of the 1 ,2,3-triazoles of the general formula I.
Using this synthetic method, arrays of triazole derivatives may be constructed with the help of a device for parallel solid phase synthesis. This may be either the pin method developed by Geysen et al. (J. Immunol. Meth. 1987, 102, 259-274) or a device with several reactors for solid phase synthesis (containers with a permeable wall), which permits the automated addition of reagents and solvents, as well as the removal of the solvents from the reactors by simultaneous or individual application of a pressure difference between the inside and the outside of the permeable wall of the reactors.
Such an array may be prepared on a multiple organic synthesizer (e.g. "ACT 496" of "Advanced ChemTech") by reacting under the conditions specified below different amines attached to a substrate and located in individual containers with different 3-oxoalkanoic acid derivatives. The resulting intermediates 2 may then be reacted with different primary amines in the presence of a water-removing agent and then with a sulfonyl azide in the presence of a base to give, after optional cleavage from the substrate, an array of different triazole derivatives.
The present invention also permits the synthesis of arrays of mixtures of 1 ,2,3- triazole derivatives. This can be achieved either by the "split and mix" method (Sepetov, N.F., Krchnak, V., Stankova, M., Wade, S., Lam, K.S., and Lebl Proc. Natl. Acad. Sci. USA 1995, 92, 5426-5430) or by using mixtures of the corresponding reagents.
By virtue of the present invention basically two different types of arrays of triazoles I or II may be constructed: fully combinatorial arrays (FCA) and not-fully combinatorial arrays (NFCA).
By FCA we refer to arrays of substituted triazoles, in which all the possible combinations of a set of selected building blocks (R-groups) are realized. As an example, a FCA of N triazoles may be prepared by selecting n diamines, m 3- oxoalkanoic acids and p primary amines so that n x m x p = N, and synthesizing all the N possible combinations of diamine/3-oxoalkanoic acid/primary amine. The selection of building blocks may be done with regard to the expected properties of the members of the array.
By NFCA we refer to arrays of substituted triazoles, in which only a selection of the possible combinations of a set of selected building blocks is realized. As an
example, a NFCA of N triazoles may be prepared by first selecting π diamines, m 3- oxoalkanoic acids and p primary amines so that n x m x p > N. Then a selection of N triazoles from all the n x m x p theoretically possible triazoles is done by grouping all the n x m x p possible triazoles into N groups of triazoles with similar expected properties and selecting from each of these groups one triazole, which is then synthesized. The selection of building blocks and of triazoles may be done with regard to the expected properties of the members of the array.
For the preparation of such arrays of compounds, the exact positions of the substrate does, by itself, not give any structural information about the compound prepared on this particular batch of substrate. For this reason, the spatial arrangement of the substrate is irrelevant. Structural information will be accessible only from the records of the sequences of reagents added to each batch of substrate. In every step of the preparation of a FCA or a NFCA, the exact location of one substrate-container within the array of containers and the structure of the different reagents added to this container is recorded, so that the precise structure of the triazole resulting from one given container can always be deduced.
The resulting arrays of 1 ,2,3-triazoles may then be screened by comparing the individual triazoles in terms of their ability to bind to a particular receptor or to induce a particular biological process or to catalyze a biological or chemical reaction. This can be achieved basically in two different ways. One possibility may be the screening of the substrate-bound triazoles II, e.g. against a soluble receptor. This could for instance be a radioactively labelled peptide or enzyme, which would easily permit to determine the binding of a given triazole II to this peptide by washing away the excess of radioligand used and determining the remaining radioactivity of each substrate-bound triazole ll-peptide complex. Alternatively, as a further example, catalytic activity of the different substrate-bound triazoles II for a given biological process or a chemical reaction may be measured by comparing the speed at which this biological process or a chemical reaction takes place in the presence and in the absence of a given substrate-bound triazole II.
The second option for screening may consist in screening the triazoles I, after having cleaved the linker of the substrate-bound triazoles II and using appropriately charged and indexed Microtiter plates of similar multiwell arrangements, in solution against a substrate-bound receptor or enzyme. The screening of soluble small molecules is conventional and well known. Typically, radioassays are being used, in
which the competitive binding of the radiolabelled, natural ligand of a given receptor and the compound to be tested for binding to this receptor is investigated.
An example would be a screening against the cholecystokinine receptors, which are widely distributed throughout the central and peripheral nervous system and mediate numerous physiological responses. Crude membrane homogenates may be prepared according to the procedure described by Chang et al. (Proc. Natl. Acad. Sci. 1986, 4923-4926) and radiolabelled cholecystokinine can be purchased from New England Nuclear, Massachusetts, U.S.A. Other examples will be readily o apparent to those skilled in the arts of physiology, biology and biotechnology. These could for instance be the somatostatine receptors, the glucagon receptors, the insulin receptor, etc.
Alternatively, functional or other assays may be used, in which for example the 5 biological response of a cell or a genetically modified or unmodified organism is measured as a function of the amount of test-substance added to this organism. As a further example, the catalytic activity of the different triazoles I for a given biological process or a chemical reaction may be measured by comparing the speed at which this biological process or a chemical reaction takes place in the o presence and in the absence of a given triazole I.
The methods described above may be used to prepare and screen large numbers of compounds in a reasonable amount of time. Synthesis may be combined with screening in various different ways to screen compounds in unusually large arrays. 5
References
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2. Gordon, E. M.; Barrett, R. W.; Dower, W. J.; Fodor, S. P. A.; Gallop, M. A. J. Med. Chem. 1994, 37, 1385-1401.
3. Terrett, N. K.; Gardner, M.; Gordon, D. W.; Kobylecki, R. J.; Steele, J. 5 Tetrahedron. 1995, 51, 8135-8173.
4. Lebl, M.; Krchnak, V.; Sepetov, N. F.; Kocis, P.; Patek, M.; Flegelova, Z.; Ferguson, R.; Lam, K. S. Journal Of Protein Chemistry. 1994, 13, 484-486.
5. Sepetov, N. F.; Krchnak, V.; Stankova, M.; Wade, S.; Lam, K. S.; Lebl, M. Proc. Natl. Acad. Sci. USA 1995, 92, 5426-5430.
6. Liskamp, R. M. J. Angew. Chem. Int. Ed. Engl. 1994, 33, 633-636.
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9. Baldwin, J. J.; Burbaum, J. J.; Henderson, I.; Ohlmeyer, M. H. J. J. Am. Chem. Soc. 1995, 117, 5588-5589.
10. Jung et al., "Multiple Peptide Synthesis Methods and their Applications", Angew. Chem. Int. Ed. Engl. 1992, 31, 367-383.
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12. Augusti, R.; Kascheres, C. Tetrahedron. 1994, 50, 6723-6726.
13. Regitz, M. Angewandte Chemie 1965, 77, 735.
14. Eistert, B.; Regitz, M.; Heck, G.; Schwall, H. In Houben Weyl, Vol. X/4; Mϋller, E., Ed.; Thieme: Stuttgart, 1968; pp 510-512.
15. Chakrasali, R. T.; Ila, H.; Junjappa, H. Synthesis, 1988, 851.
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17. Dankova, E. F.; Bakulev, V. A.; Krutko, D. P. Khim. Geterotsikl. Soedin., 1991, 775.
18. J. A. Ellman, Solid phase and combinatorial synthesis of benzodiazepine compounds on a solid support, US Patent 5,288,514; Feb. 22, 1994.
19. Moltzen, E K.; Pedersen, H.; Bogeso, K. P.; Meier, E.; Frederiksen, K., Sanchez, C; Lembol, H. L. Journal Of Medicinal Chemistry. 1994, 37, 4085-4099.
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Examples
Preparation of resin-bound 3-oxobutyrylpiperazine 5
To a suspension of Wang resin (45.0 g, 42.3 mmol, Novabiochem, loading: 0.94 mmol/g) in dichloromethane (DCM, 600 mL) first pyridine (52 mL) and then a solution of 4-nitrophenyl chloroformate (43.0 g, 231 mmol) were added. After shaking for 3 h at room temperature the mixture was filtered, the resin was washed o with DCM (5 x 300 mL) and then added to a cold solution of piperazine (38.2 g, 444 mmol) in DMF (600 mL). The resulting mixture was stirred for 13 h, filtered and the resin was washed extensively with DMF, DCM and methanol. After drying, approx. 45 g of resin-bound piperazine was obtained.
5 To a suspension of this resin (0.60 g, approx. 0.6 mmol) in DMF (4 mL) a freshly prepared solution of 3-oxobutyric acid phenyl ester (5 equivalents, prepared by refluxing a solution of phenol and 2,2,6-trimethyl-1)3-dioxin-4-one in toluene for 1 h
and used without isolation; preparation described by Clemens, R. J.; Hyatt, J. A. J. Org. Chem. 1985, 50, 2431-2435) in toluene (6 mL) was added, followed by the addition of diisopropylethylamine (2 mL). The resulting mixture was shaken for 2 h, filtered, the resin was washed with DMF and the acylation was then repeated once as described above for 3 h. Washing with DMF yielded resin-bound 3- oxobutyrylpiperazine, which was used for the following reactions without drying.
General procedure for the solid phase synthesis of 1 ,2,3-thazole-4-carboxylic acid amides
To the resin-bound 3-oxobutyramide (prepared as described above from 0.60 g of resin-bound piperazine; approx. 0.6 mmol) a solution of the primary amine (3.0 mmol) in DMF (4 mL) was added, followed by the addition of triethyl orthoformate (4 mL). The resulting mixture was shaken for 24 h and then filtered. The resin was washed with DMF (2 x 10 mL) and then a solution of p-toluenesulfonyl azide (0.60 mL, 3.84 mmol) in DMF (6 mL) was added to the resin, followed by the addition of diisopropylethylamine (2 mL). After shaking for 24 h the mixture was filtered and carefully washed with DMF, methanol, DCM and 10% AcOH in DCM. It was then suspended in a solution of 60% TFA in DCM (8 mL) and shaken for 3 h. Filtration, washing with DCM and concentration of the combined filtrates gave the crude triazoles as oils.
[5-Methyl-4-(piperazine-1-carbonyl)-1H-1,2,3-triazol-1-yl]acetic acid benzyl ester trifluoroacetate
HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 13.3 min, 65% pure. 1H NMR (400 MHz, DMSO-d6) δ 2.34 (s, 3H), 3.20 (m, 4H), 3.82 (m, 2H), 4.18 (m, 2H), 5.21 (s, 2H), 5.57 (s, 2H), 7.39 (s, br, 5H), 8.99 (s, br, 2H). For analytical purposes, this compound was derivatized by conversion into the corresponding 2-tolylurea by reaction with 2-methylphenyl isocyanate. The triazole obtained from 0.60 g of starting Wang resin gave 201 mg (70%) of the 2-tolylurea. Colourless solid, m.p. 125-127°C (ethyl acetate). Anal. Calcd. for C25H28N6O4 (476.53): C, 63.01; H, 5.92; N, 17.64. Found: C, 62.93; H, 6.06; N, 17.10.
[1-(4-Methoxybenzyl)-5-methyl-1H-1,2, 3-triazol-1-yl]piperazin-1-ylmethanone trifluoroacetate
HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 10.3 min, 52% pure. 1H NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.20 (m, 4H), 3.72 (s, 3H), 3.80 (m, 2H), 4.17 (m, 2H), 5.55 (s, 2H), 6.92 (d, J = 8.0 Hz, 2H), 7.19 (d, J = 8.0 Hz, 2H), 8.93 (s, br, 2H). For analytical purposes, this compound was derivatized by conversion into the corresponding 4-chlorophenylurea by reaction with 4-chlorophenyl isocyanate. The triazole obtained from 1.20 g of starting Wang resin gave 190 mg (34%) of the 4-chlorophenylurea. Colourless solid, m.p. 202- 204°C (ethyl acetate). Anal. Calcd. for C23H25CIN6O3 (468.94): C, 58.91 ; H, 5.37; N, o 17.92. Found: C, 59.03; H, 5.45; N, 17.72.
{1 -[2-(4-Nitrophenyl)ethyl]-5-methyl- 1H-1,2, 3-triazol- 1 -yl}piperazin-1-ylmethanone trifluoroacetate
5 Yield of crude trifluoroacetate: 75%. HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 14.6 min, 82% pure. 1H NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.15 (m, 4H), 3.30 (t, J = 7.0 Hz, 2H), 3.82 (m, 2H), 4.15 (m, 2H), 4.64 (t, J = 7.0 Hz, 2H), 7.45 (d, J = 8.0 Hz, 2H), 8.13 (d, J = 8.0 Hz, 2H), 9.01 (s, br, 2H). For analytical purposes, this compound was derivatized by o conversion into the corresponding acetamide by reaction with acetic anhydride. The resulting product was identical to the compound obtained from 1 -acetylpiperazine by acetoacetylation (Clemens, R. J.; Hyatt, J. A. J. Org. Chem. 1985, 50, 2431- 2435), condensation with 4-nitrophenylethylamine and cyclization by treatment with p-toluenesulfonyl azide and triethylamine. Colourless solid, m.p. 142-144 °C (ethyl 5 acetate). Anal. Calcd. for C18H22N6O4 (386.41): C, 55.95; H, 5.74; N, 21.74. Found: C, 56.13; H, 5.93; N, 21.28.
Following this procedure, the following triazole derivatives have been prepared:
0
[5-methyl-1-(3-pyrrolidin-1-ylpropyl)- 1 H-1 ,2,3-triazol-4-yl]piperazin-1-yl- methanone trifluoroacetate
Η NMR (400 MHz, DMSO-αf
6) δ 1.86 (m, 2H), 2.00 (m, 2H), 2.21 (m, 2H), 2.30 (s, 3H), 2.99 (m, 2H), 3.18 (m, 6H), 3.57 (m, 2H), 3.81 (m, 4H), 4.15 (m, 2H), 8.92 (s, br, 3H).
[1-(4-hydroxybutyl)-5-methyl-
1 H-1 ,2,3-trιazol-4-yl]pιperazιn-1 -yl- methanone trifluoroacetate
CF3C02H
1H NMR (400 MHz, DMSO-d6) δ 1.71 (m, 2H), 1.89 (m, 2H), 2.45 (s, 3H), 3.19 (m, 4H), 3.81 (m, 2H), 4.17 (m, 2H), 4.30-4.43 (m, 4H), 8.98 (m, 2H).
{1-[2-(4-nιtrophenyl)ethyl]-5-methyl- 1H-1,2,3-trιazol-4-yl}pιperazιn-1-yl- methanone trifluoroacetate
CF3C02H HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 14.6 min, 82% pure. Η NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.15 (m, 4H), 3.30 (t, J = 7.0 Hz, 2H), 3.82 (m, 2H), 4.15 (m, 2H), 4.64 (t, J = 7.0 Hz, 2H), 7.45 (d, J = 8.0 Hz, 2H), 8.13 (d, J = 8.0 Hz, 2H), 9.01 (s, br, 2H).
[5-methyl-4-(pιperazin-1-carbonyl)- 1 H-1 ,2,3-trιazoM -yl]acetιc acid benzyl ester trifluoroacetate
HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 13.3 min, 65% pure.
1H NMR (400 MHz, DMSO-d
6) δ 2.34 (s, 3H), 3.20 (m, 4H), 3.82 (m, 2H), 4.18 (m, 2H), 5.21 (s, 2H), 5.57 (s, 2H), 7.39 (s, br, 5H), 8.99 (s, br, 2H).
[ 1 -(4-methoxy benzy l)-5-methy I- 1 H-1 ,2,3-trιazol-4-yl]pιperazιπ-1-yl- methanone trifluoroacetate
CF3C02H HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 10.3 min, 52% pure. Η NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.20 (m, 4H), 3.72 (s, 3H), 3.80 (m, 2H), 4.17 (m, 2H), 5.55 (s, 2H), 6.92 (d, J = 8.0 Hz, 2H), 7.19 (d, J = 8.0 Hz, 2H), 8.93 (s, br, 2H).
{1-[2-(2-hydroxymethyl)phenylthio]benzyl- 5-methyl-1 H- 1 ,2 , 3-trιazol-4-y l}pιperazιn- 1-ylmethanone trifluoroacetate
CF3C02H
HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 15.0 min, 72% pure. Η NMR (400 MHz, DMSO-d6) δ 2.33 (s, 3H), 3.15 (m, 4H), 3.79 (m, 2H), 4.14 (m, 2H), 4.54 (s, 2H), 5.63 (s, 2H), 6.90-7.20 (m, 8H), 8.99 (m, 2H).
[5-methyl-1-(3-ιmιdazol-1-ylpropyl)- 1H-1,2,3-trιazol-4-yl]piperaziπ-1-yl- methanone trifluoroacetate
2 CF3C02H
Η NMR (400 MHz, DMSO-d6) δ 2.35-2.49 (m, 5H), 3.18 (m, 4H), 3.82 (m, 2H), 4.15
(m, 2H), 4.29 (t, J = 7.5 Hz, 2H), 4.40 (t, J = 7.5 Hz, 2H), 7.71 (s, 1 H), 7.80 (s, 1H), 9.05 (m, 4H).
[5-methy 1-1 -(propin-3-yl)- 1H-1 ,2,3-triazol-4-yl]piperazin-1-yl- methanone trifluoroacetate
CF3C02H
Η NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.18 (m, 4H), 3.61 (t, J = 3.2 Hz, 1 H), 3.79 (m, 2H), 4.13 (m, 2H), 5.38 (d, J = 3.2 Hz, 2H), 9.02 (m, 2H).
(5-methyl-1-benzyl- 1H-1 ,2,3-tπazol-4-yl)pιperazin-1-yl- methanoπe trifluoroacetate
CF3C02H
Η NMR (400 MHz, DMSO-d6) δ 2.37 (s, 3H), 3.13 (m, 4H), 3.81 (m, 2H), 4.18 (m, 2H), 5.67 (s, 2H), 7.20-7.50 (m, 5H), 9.05 (s, 2H).
( 1 -cyclohexy l-5-methyl-
1 H-1 ,2,3-triazol-4-yi)piperazin-1-yl- methanone trifluoroacetate
Η NMR (400 MHz, DMSO-d6) δ 1.40-2.01 (m, 10H), 2.46 (s, 3H), 3.22 (m, 4H), 3.81 (m, 2H), 4.14 (m, 2H), 4.34 (m, 1 H), 9.02 (m, 2H).
(1-benzyl-5-methyl-
1H-1 ,2,3-triazol-4-yl)-1 ,4-dιazepan-1-yl- methaπone trifluoroacetate
CF3C02H
Η NMR (400 MHz, DMSO-d6) δ 1.95-2.12 (m, 2H), 2.37 (m, 3H), 3.18-3.32 (m, 4H), 3.42 (m, 1 H), 3.66 (m, 1H), 3.81 (m, 1 H), 4.04 (m, 1 H), 5.64 (s, 2H), 7.20-7.40 (m, 5H), 8.85 (m, 2H).
1-[2-(4-nitrophenyl)ethyl]-5-methyl- 1 H-1 ,2,3-triazole-4-carboxylic acid benzyl-(2-benzylamino)ethylamide
trifluoroacetate
CF3C02H
HPLC (Lichrosorb RP 18, acetonitrile/water gradient, monitoring at 254 nm): elution at 16.9 min, 41% pure. 1H NMR (complexity due to the presence of two amide-bond rotamers, 400 MHz, DMSO-d6) δ 2.30 (s, 1.5H), 2.42 (s, br, 1.5H), 3.18 (m, 2H), 3.28-3.40 (m, 2H), 4.20 (m, 4H), 4.68 (m, 1H), 5.10 (m, 1 H), 7.20-7.52 (m, 12H), 8.13 (d, J = 8.0 Hz, 2H), 8.96 (s, br, 2H).
Conclusion
The above description is illustrative and not restrictive. Various modifications and variations of the invention will become apparent to those of skill in the art upon review of this disclosure. Merely by way of example a wide variety of process times, reaction temperature as well as different ordering of certain processing steps may be utilized. The scope of the invention should, therefore, be determined, not with reference to the above description, but instead should be determined with reference to the appended claims along with their full scope of equivalents.