SG11201906717SA - Methods and systems for associating physical and genetic properties of biological particles - Google Patents
Methods and systems for associating physical and genetic properties of biological particlesInfo
- Publication number
- SG11201906717SA SG11201906717SA SG11201906717SA SG11201906717SA SG11201906717SA SG 11201906717S A SG11201906717S A SG 11201906717SA SG 11201906717S A SG11201906717S A SG 11201906717SA SG 11201906717S A SG11201906717S A SG 11201906717SA SG 11201906717S A SG11201906717S A SG 11201906717SA
- Authority
- SG
- Singapore
- Prior art keywords
- nucleic acid
- partitions
- international
- california
- biological
- Prior art date
Links
- 239000002245 particle Substances 0.000 title abstract 8
- 238000000034 method Methods 0.000 title abstract 3
- 230000000704 physical effect Effects 0.000 title abstract 3
- 230000002068 genetic effect Effects 0.000 title abstract 2
- 150000007523 nucleic acids Chemical class 0.000 abstract 7
- 238000005192 partition Methods 0.000 abstract 6
- 102000039446 nucleic acids Human genes 0.000 abstract 5
- 108020004707 nucleic acids Proteins 0.000 abstract 5
- 239000003795 chemical substances by application Substances 0.000 abstract 2
- 230000003287 optical effect Effects 0.000 abstract 2
- 239000011324 bead Substances 0.000 abstract 1
- 230000008520 organization Effects 0.000 abstract 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B35/00—ICT specially adapted for in silico combinatorial libraries of nucleic acids, proteins or peptides
- G16B35/20—Screening of libraries
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Molecular Biology (AREA)
- Wood Science & Technology (AREA)
- Medical Informatics (AREA)
- Zoology (AREA)
- Biochemistry (AREA)
- Library & Information Science (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Microbiology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Engineering & Computer Science (AREA)
- Immunology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Medicines Containing Material From Animals Or Micro-Organisms (AREA)
Abstract
820 FIG. 8 (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date 23 May 2019 (23.05.2019) WIPO I PCT 111111111111110111111111111111101111101001111111111111111111111111111011111011110111111 (10) International Publication Number WO 2019/099908 Al (51) International Patent Classification: C12Q 1/6806 (2018.01) G16B 20/00 (2019.01) G16B 35/00 (2019.01) (21) International Application Number: PCT/US2018/061629 (74) (22) International Filing Date: 16 November 2018 (16.11.2018) (25) Filing Language: English (26) Publication Language: English (30) Priority Data: 62/587,634 17 November 2017 (17.11.2017) US (71) Applicant: 10X GENOMICS, INC. [US/US]; 7068 Koll Center Parkway, Suite 401, Pleasanton, California 94566 (US). (72) Inventors: BHARADWAJ, Rajiv; 7068 Koll Center Park- way, Suite 401, Pleasanton, California 94566 (US). SAX- ONOV, Serge; 7068 Koll Center Parkway, Suite 401, Pleasanton, California 94566 (US). Agent: YANDELL-ZHAO, Margaret A.; WILSON SONSINI GOODRICH & ROSATI, 650 Page Mill Road, Palo Alto, California 94304-1050 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, (54) Title: METHODS AND SYSTEMS FOR ASSOCIATING PHYSICAL AND GENETIC PROPERTIES OF BIOLOGICAL = PARTICLES Got ON ON ON O ON O C (57) : Provided herein are methods and systems for processing a nucleic acid molecule from a biological particle (e.g., cell). A plurality of partitions (e.g., droplets) may be generated such that partitions of the plurality of partitions each include a biological particle (e.g., cell) comprising the nucleic acid molecule and a particle (e.g., bead). The partitions can be processed (e.g., imaged) to obtain one or more physical and/or optical properties of their respective biological particles. The nucleic acid molecules included in the partitions can be barcoded and sequenced (e.g., using nucleic acid barcode molecules coupled to the particles of the partitions) to generate nucleic acid sequences of the nucleic acid molecules. The nucleic acid sequences can be electronically associated with the one or more optical properties of the biological particles. [Continued on next page] WO 2019/099908 Al HINIONOIMEIHMEIMEN001 MENNEHIMOIMEMEMIE SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). Published: with international search report (Art. 21(3)) before the expiration of the time limit for amending the claims and to be republished in the event of receipt of amendments (Rule 48.2(h))
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201762587634P | 2017-11-17 | 2017-11-17 | |
PCT/US2018/061629 WO2019099908A1 (en) | 2017-11-17 | 2018-11-16 | Methods and systems for associating physical and genetic properties of biological particles |
Publications (1)
Publication Number | Publication Date |
---|---|
SG11201906717SA true SG11201906717SA (en) | 2019-08-27 |
Family
ID=65041876
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
SG11201906717SA SG11201906717SA (en) | 2017-11-17 | 2018-11-16 | Methods and systems for associating physical and genetic properties of biological particles |
Country Status (5)
Country | Link |
---|---|
EP (2) | EP3559272B1 (en) |
CN (2) | CN117604074A (en) |
DK (1) | DK3559272T3 (en) |
SG (1) | SG11201906717SA (en) |
WO (1) | WO2019099908A1 (en) |
Families Citing this family (10)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US10161007B2 (en) | 2012-08-13 | 2018-12-25 | The Regents Of The University Of California | Methods and systems for detecting biological components |
EP3160654A4 (en) | 2014-06-27 | 2017-11-15 | The Regents of The University of California | Pcr-activated sorting (pas) |
CA3001986C (en) | 2014-10-22 | 2023-02-21 | The Regents Of The University Of California | High definition microdroplet printer |
EP3253479B1 (en) | 2015-02-04 | 2022-09-21 | The Regents of The University of California | Sequencing of nucleic acids via barcoding in discrete entities |
WO2018031691A1 (en) | 2016-08-10 | 2018-02-15 | The Regents Of The University Of California | Combined multiple-displacement amplification and pcr in an emulsion microdroplet |
US20220033893A1 (en) | 2016-12-21 | 2022-02-03 | The Regents Of The University Of California | Single Cell Genomic Sequencing Using Hydrogel Based Droplets |
CN116785253A (en) * | 2017-09-29 | 2023-09-22 | 加利福尼亚大学董事会 | Method for preparing monodisperse emulsion |
US10501739B2 (en) | 2017-10-18 | 2019-12-10 | Mission Bio, Inc. | Method, systems and apparatus for single cell analysis |
SG11202111242PA (en) | 2019-03-11 | 2021-11-29 | 10X Genomics Inc | Systems and methods for processing optically tagged beads |
CN114729393A (en) * | 2019-11-15 | 2022-07-08 | 美天施生物科技有限两合公司 | Color and barcoded beads for single cell indexing |
Family Cites Families (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2008021123A1 (en) | 2006-08-07 | 2008-02-21 | President And Fellows Of Harvard College | Fluorocarbon emulsion stabilizing surfactants |
IN2015DN01126A (en) | 2012-08-14 | 2015-06-26 | 10X Genomics Inc | |
US20140378345A1 (en) | 2012-08-14 | 2014-12-25 | 10X Technologies, Inc. | Compositions and methods for sample processing |
KR20230074639A (en) * | 2013-08-28 | 2023-05-30 | 벡톤 디킨슨 앤드 컴퍼니 | Massively parallel single cell analysis |
CN114534806B (en) | 2014-04-10 | 2024-03-29 | 10X基因组学有限公司 | Fluidic devices, systems and methods for packaging and partitioning reagents and uses thereof |
KR20230070325A (en) | 2014-06-26 | 2023-05-22 | 10엑스 제노믹스, 인크. | Methods of analyzing nucleic acids from individual cells or cell populations |
ES2836802T3 (en) * | 2015-02-27 | 2021-06-28 | Becton Dickinson Co | Spatially addressable molecular barcodes |
WO2016149661A1 (en) * | 2015-03-18 | 2016-09-22 | The Broad Institute, Inc. | Massively parallel on-chip coalescence of microemulsions |
KR20180097536A (en) * | 2015-11-04 | 2018-08-31 | 아트레카, 인크. | A combination set of nucleic acid barcodes for the analysis of nucleic acids associated with single cells |
-
2018
- 2018-11-16 EP EP18836715.5A patent/EP3559272B1/en active Active
- 2018-11-16 CN CN202311574737.XA patent/CN117604074A/en active Pending
- 2018-11-16 WO PCT/US2018/061629 patent/WO2019099908A1/en unknown
- 2018-11-16 EP EP22186351.7A patent/EP4212629A1/en active Pending
- 2018-11-16 DK DK18836715.5T patent/DK3559272T3/en active
- 2018-11-16 SG SG11201906717SA patent/SG11201906717SA/en unknown
- 2018-11-16 CN CN201880017886.7A patent/CN110770352B/en active Active
Also Published As
Publication number | Publication date |
---|---|
WO2019099908A1 (en) | 2019-05-23 |
EP3559272B1 (en) | 2022-08-31 |
CN110770352A (en) | 2020-02-07 |
EP3559272A1 (en) | 2019-10-30 |
CN110770352B (en) | 2023-12-15 |
EP4212629A1 (en) | 2023-07-19 |
CN117604074A (en) | 2024-02-27 |
DK3559272T3 (en) | 2022-10-10 |
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