SG11201807720TA - Methods and systems for determining antibiotic susceptibility - Google Patents

Methods and systems for determining antibiotic susceptibility

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Publication number
SG11201807720TA
SG11201807720TA SG11201807720TA SG11201807720TA SG11201807720TA SG 11201807720T A SG11201807720T A SG 11201807720TA SG 11201807720T A SG11201807720T A SG 11201807720TA SG 11201807720T A SG11201807720T A SG 11201807720TA SG 11201807720T A SG11201807720T A SG 11201807720TA
Authority
SG
Singapore
Prior art keywords
international
march
pct
systems
methods
Prior art date
Application number
SG11201807720TA
Inventor
George Terrance Walker
Tony Rockweiler
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Opgen Inc
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Publication date
Application filed by Opgen Inc filed Critical Opgen Inc
Publication of SG11201807720TA publication Critical patent/SG11201807720TA/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/407Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with other heterocyclic ring systems, e.g. ketorolac, physostigmine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/496Non-condensed piperazines containing further heterocyclic rings, e.g. rifampin, thiothixene or sparfloxacin
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/535Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
    • A61K31/53751,4-Oxazines, e.g. morpholine
    • A61K31/53831,4-Oxazines, e.g. morpholine ortho- or peri-condensed with heterocyclic ring systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/54Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame
    • A61K31/542Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/545Compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins, cefaclor, or cephalexine
    • A61K31/546Compounds containing 5-thia-1-azabicyclo [4.2.0] octane ring systems, i.e. compounds containing a ring system of the formula:, e.g. cephalosporins, cefaclor, or cephalexine containing further heterocyclic rings, e.g. cephalothin
    • CCHEMISTRY; METALLURGY
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    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/106Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16B5/00ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16H70/00ICT specially adapted for the handling or processing of medical references
    • G16H70/60ICT specially adapted for the handling or processing of medical references relating to pathologies
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    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Organic Chemistry (AREA)
  • Molecular Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Animal Behavior & Ethology (AREA)
  • Epidemiology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Physiology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)

Abstract

INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property -, Organization 1111111101111011101010111110101111101110111110110011111111111111101111011111 International Bureau .. .... ..Yejd (10) International Publication Number (43) International Publication Date ..... ...1 WO 2017/156037 Al 14 September 2017 (14.09.2017) WIP0 I PCT (51) International Patent Classification: AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, C12Q 1/68 (2006.01) BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, Fk GB, GD, GE, GH, GM, GT, (21) International Application Number: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KH, KN, PCT/US2017/021209 KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, (22) International Filing Date: MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, 7 March 2017 (07.03.2017) NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, (25) Filing Language: English TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, (26) Publication Language: English ZA, ZM, ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 62/304,807 7 March 2016 (07.03.2016) US kind of regional protection available): ARIPO (BW, GH, 62/305,247 8 March 2016 (08.03.2016) US GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, (71) Applicant: OPGEN, INC. [US/US]; 708 Quince Orchard TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, Road, Gaithersburg, Maryland 20878 (US). DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, (72) LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, Inventors: WALKER, George Terrance; 6480 Wiscon- sin Avenue #1123, Chevy Chase, Maryland 20815 (US). SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). ROCKWEILER, Tony; 2001 N. Adams Street #829, Ar- lington, Virginia 22201 (US). Declarations under Rule 4.17: (74) Agents: ELRIFI, Ivor, R. et al.; Cooley LLP, 1299 — as to applicant's entitlement to apply for and be granted a Pennsylvania Avenue, NW, Suite 700, Washington, Dis- patent (Rule 4.1700) trict of Columbia 20004 (US). Published: Designated States (unless otherwise indicated, for every with international search report (Art. 21(3)) kind of national protection available): AE, AG, AL, AM, (81) — Title: METHODS AND SYSTEMS FOR DETERMINING ANTIBIOTIC SUSCEPTIBILITY (54) Figure 1 _ . — Il IN en © ir) , 11 IN 1-1 (57) : The present invention provides methods, systems, and kits for determining an appropriate therapeutic regimen for 0 treating an infection caused by antibiotic resistant bacteria. N O
SG11201807720TA 2016-03-07 2017-03-07 Methods and systems for determining antibiotic susceptibility SG11201807720TA (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201662304807P 2016-03-07 2016-03-07
US201662305247P 2016-03-08 2016-03-08
PCT/US2017/021209 WO2017156037A1 (en) 2016-03-07 2017-03-07 Methods and systems for determining antibiotic susceptibility

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SG11201807720TA true SG11201807720TA (en) 2018-10-30

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SG11201807720TA SG11201807720TA (en) 2016-03-07 2017-03-07 Methods and systems for determining antibiotic susceptibility

Country Status (8)

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US (1) US20170253917A1 (en)
EP (1) EP3426800A1 (en)
KR (1) KR20190010533A (en)
CN (1) CN109196122A (en)
CA (1) CA3016632A1 (en)
IL (1) IL261651A (en)
SG (1) SG11201807720TA (en)
WO (1) WO2017156037A1 (en)

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2015229077A1 (en) 2014-03-13 2016-09-29 Opgen, Inc. Methods of detecting multi-drug resistant organisms
WO2015184017A1 (en) 2014-05-27 2015-12-03 Opgen, Inc. Systems, apparatus, and methods for generating and analyzing resistome profiles
EP3861129A4 (en) * 2018-10-02 2022-07-20 BioFire Diagnostics, LLC Bacterial response
CN109576383B (en) * 2018-12-14 2022-11-11 广西大学 Method for constructing mouse disease model infected with bacterial septicemia and judging disease condition
CN110129460B (en) * 2019-03-21 2023-07-04 广西壮族自治区动物疫病预防控制中心 Double qPCR (quantitative polymerase chain reaction) kit for two drug-resistant genes of super bacteria and detection method
CN110184364A (en) * 2019-05-14 2019-08-30 天津科技大学 A kind of multi-PCR detection method and application for detecting the legionella pneumophilia of carrying Sulfonamides-resistant genes
CN110408712B (en) * 2019-07-29 2023-07-04 上海市农业科学院 Quick screening kit and primer for quinolone drug resistance genes in bacteria
CN110904249B (en) * 2019-10-28 2023-04-25 杭州千基生物科技有限公司 Kit and method for detecting nucleic acid of bacterial drug-resistant gene quantum dot chip
KR102279822B1 (en) * 2019-11-28 2021-07-19 가톨릭대학교 산학협력단 Composition for detecting antibiotic resistant pathogen of sepsis and uses thereof
US20210340599A1 (en) * 2020-05-04 2021-11-04 International Business Machines Corporation Predicting antibiotic resistance and complementary antibiotic combinations
CN114898800B (en) * 2022-07-14 2022-09-16 中国医学科学院北京协和医院 Method and system for predicting sensitivity of klebsiella pneumoniae to ceftriaxone
CN115862730B (en) * 2023-02-06 2023-06-02 中国医学科学院北京协和医院 System and method for predicting sensitivity of Klebsiella to cefoxitin
CN116732209B (en) * 2023-08-04 2023-10-13 广东省农业科学院农业质量标准与监测技术研究所 Kit and method for simultaneously detecting drug resistance genes ISCR2 and FLOR based on digital PCR technology

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20130183679A1 (en) * 2010-09-10 2013-07-18 Marie-Cecile Ploy Method for detecting the presence of bacterial strains resistant to antibiotics in a biological sample
WO2015114094A1 (en) * 2014-01-30 2015-08-06 Siemens Aktiengesellschaft Genetic resistance testing
AU2015229077A1 (en) 2014-03-13 2016-09-29 Opgen, Inc. Methods of detecting multi-drug resistant organisms
WO2015184017A1 (en) 2014-05-27 2015-12-03 Opgen, Inc. Systems, apparatus, and methods for generating and analyzing resistome profiles

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Publication number Publication date
CN109196122A (en) 2019-01-11
IL261651A (en) 2018-10-31
US20170253917A1 (en) 2017-09-07
KR20190010533A (en) 2019-01-30
CA3016632A1 (en) 2017-09-14
WO2017156037A1 (en) 2017-09-14
EP3426800A1 (en) 2019-01-16

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