SE0102812D0 - New conversion method - Google Patents

New conversion method

Info

Publication number
SE0102812D0
SE0102812D0 SE0102812A SE0102812A SE0102812D0 SE 0102812 D0 SE0102812 D0 SE 0102812D0 SE 0102812 A SE0102812 A SE 0102812A SE 0102812 A SE0102812 A SE 0102812A SE 0102812 D0 SE0102812 D0 SE 0102812D0
Authority
SE
Sweden
Prior art keywords
sequence
overlappingly
protein sequence
fingerprint
starting
Prior art date
Application number
SE0102812A
Other languages
Swedish (sv)
Inventor
Jan Biro
Original Assignee
Jan Biro
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Jan Biro filed Critical Jan Biro
Priority to SE0102812A priority Critical patent/SE0102812D0/en
Publication of SE0102812D0 publication Critical patent/SE0102812D0/en
Priority to PCT/SE2002/001432 priority patent/WO2003019453A1/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Theoretical Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biomedical Technology (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Organic Chemistry (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Molecular Biology (AREA)
  • Plant Pathology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Peptides Or Proteins (AREA)

Abstract

The present invention relates to a new method for the converting of a protein sequence or an NA sequence into an overlappingly translated protein sequence (OTS) comprising the steps:a) back-translating said protein sequence into a NA sequence, if necessary, otherwise use already existing NA sequence and go directly to step b), b) translating said NA sequence wherein 3 different codon reading frames are used, one starting on nucleic acid 1, one starting on nucleic acid 2 and one starting on nucleic acid 3, c) combining the amino acids obtained into an overlappingly translated protein sequence. Also a method for comparing overlappingly translated protein sequences and computer programs for performing said above methods stored on a data carrier are disclosed. The present invention also relates to a method for the converting of an overlappingly translated protein sequence (OTS) into a 20 amino acid long fingerprint and a method for determining a fingerprint similarity coefficient comprising comparing a fingerprint obtainable from said method with a predetermined fingerprint stored on a data carrier.
SE0102812A 2001-08-23 2001-08-23 New conversion method SE0102812D0 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
SE0102812A SE0102812D0 (en) 2001-08-23 2001-08-23 New conversion method
PCT/SE2002/001432 WO2003019453A1 (en) 2001-08-23 2002-08-07 Novel sequence conversion methods for the production of overlappingly translated protein sequences (ots)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
SE0102812A SE0102812D0 (en) 2001-08-23 2001-08-23 New conversion method

Publications (1)

Publication Number Publication Date
SE0102812D0 true SE0102812D0 (en) 2001-08-23

Family

ID=20285109

Family Applications (1)

Application Number Title Priority Date Filing Date
SE0102812A SE0102812D0 (en) 2001-08-23 2001-08-23 New conversion method

Country Status (2)

Country Link
SE (1) SE0102812D0 (en)
WO (1) WO2003019453A1 (en)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109785900B (en) * 2018-12-12 2023-05-23 上海派森诺生物科技股份有限公司 Microbial community functional gene analysis method based on protein sequence similarity

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1072010B1 (en) * 1999-01-19 2010-04-21 Maxygen, Inc. Oligonucleotide mediated nucleic acid recombination
WO2001041038A2 (en) * 1999-11-30 2001-06-07 Bayer Corporation Method for finding homologs of known genes

Also Published As

Publication number Publication date
WO2003019453A1 (en) 2003-03-06

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