OA20775A - Detecting gut barrier dysfunction and/or cirrhosis. - Google Patents

Abstract

The present invention relates to methods, kits and a test strip for detecting gut barrier dysfunction and/or cirrhosis in a subject. In addition, a method of treating a subject with gut barrier dysfunction and/or cirrhosis is provided.

Description

Titulaire(s) : MACFARLANE BURNET INSTITUTE FOR

MEDICAL RESEARCH AND PUBLIC HEALTH LIMITED,

Commercial Road, MELBOURNE, Victoria 3004 (AU)

VAN, Huy (AU); ANDERSON, David (AU) HOWELL, Jessica (AU)

Mandataire : S.C.P AKKUM, AKKUM & Associates, No. 1777, Rue 6.261, Yaoundé, Auditorium Jean Paul II, Quartier Mbankolo, B.P. 4966, YAOUNDE (CM)

O.A.P.I. - B.P. 887, YAOUNDE (Cameroun) - Tel. (237) 222 20 57 00-Site web: http:/www.oapi.int- Email: oapi@oapi.int

DETECTING GUT BARRIER DYSFUNCTION AND/OR CIRRHOSIS

FIELD

The field of the spécification is broadly detecting gut barrier dysfonction and/or cirrhosis in a subject. More specifically, methods, kits and test strips for tdentifying and monitoring gut barrier dysfunction and/or cirrhosis in a subject. In addition, a method of treating a subject with gut barrier dysfunction and/or cirrhosis is provided.

BACKGROUND

Bibliographie details of references in the subject spécification are also listed at the end of the spécification.

Reference to any prier art in this spécification is not, and should not be taken as, acknowledgement or any form of suggestion that this prior art forms part of the common general knowledge in any country.

Gut barrier dysfunction, also known as “increased intestinal permeability” or as “gut leakage”, 20 refers to a disturbed State of a patients’ intestinal barrier function, allowing pénétration of harmful materials including viable microorganisms or their by-products such as toxic lipopolysaccharide (LPS) and antigens that are normally excluded from the circulation. This in turn leads to chronic immune activation (either systemic as seen in HIV infection, or local as seen in inflammatory bowel disease), which is recognized as a primary driver of pathogenesis 25 in many conditions, and a suspected rôle in many others. Pathological conditions associated with gut barrier dysfunction can mostly be grouped into three types: 1) Intestinal barrier dysfunction observed in post-surgery patients subjected to major operations for diverse reasons; 2) Critically ill patients hospitalized in ICU, due to being severely injured, suffering burns, or with sepsis. Increased intestinal permeability is associated with the development of 30 systemic inflammatory response and Multiple Organ Dysfunction Syndrome (MODS) in these patients: and 3) Patients with chronic pathologie conditions where gut barrier dysfunction leads to chronic immune activation associâtes with disease progression and /or development of complications and comorbidities from other organs. This group of gut leakage patients includes patients with liver cirrhosis, HIV infection, chronic viral hepatitis B or C, non-alcoholic 35 steatohepatitis or non-alcoholic fatty liver disease, irritable bowel syndrome, obesity and diverse autoimmune conditions. Also notable is that there are a number of studies focusing on

gut barrier dysfonction in the context of neurological conditions, although corrently the outcome across these studies appearto be inconsistent.

Gut biopsy and skilled pathology examination can provide a fairly definitive indication of gut 5 barrier dysfunction, but this is invasive and impractical. There are currently no “gold standard” non-invasive tests for gut barrier dysfunction. Non-invasive biomarkers such as sérum LPS, bacterial 16S RNA and soluble CD14 are generaily accepted as indicating dysfunction on a population basis. They are subject to so much variation between patients that they hâve no prognostic or diagnostic value for individual patients. “Sugar challenge tests, which measure 10 urinary excrétion of e.g. lactulose and mannitol over 6-12 hours after an oral dose containing a mixture of these non-metabolised sugars, requires patients to collect this urine for subséquent mass spectroscopy, and is impractical for widespread use (with samples sent to central laboratories for analysis). At home sugar challenge tests are available on the market for home use, but the resuits are not well accepted clinically.

The lack of reliable biomarkers suitable for widespread use is a major barrier to: 1) better understanding the rôle of gut barrier dysfunction in many diseases (i.e. research use); 2) clinical development of pharmacological, dietary and other interventions to reduce gut barrier dysfunction (research use in a defined clinical setting); and 3) diagnosis of gut barrier 20 dysfunction in those conditions where, tn the clinic, it is generaily accepted to be a problem (such as cirrhosis, post-surgery, burns, sepsis, irritable bowel disease).

Not only is there a paucity of markers for detecting gut barrier dysfunction there is a paucity of markers for detecting cirrhosis. Early détection of cirrhosis (Chifd-Pugh A) can allow 25 intervention with thérapies or behavioural modifications to prevent and/or delay patients to progressîng to more severe levels of cirrhosis (Child-Pugh B and Chiid-Pugh C) where transplantation may be required. This is particularly important in subjects with non-alcoholic fatty liver disease (NAFLD). NAFLD affects around 25% of the global population but is usually not diagnosed until advanced disease (NASH and Grade B cirrhosis). NAFLD is increasing 30 along with other metabolic diseases associated with obesity, and population-based screening will be in high demand within the next few years as treatments become available.

Détection of more severe levels of cirrhosis can allow for more rapid intervention with thérapies and surgery.

Thus, there is a need for improved methods for identifying, screening and monitoring gut barner dysfunction, liver disease and/or cirrhosis in a subject, including methods and kits for identifying individuals with any of the different stages of cirrhosis (Child-Pugh A, Child-Pugh B and ChildPugh C).

A person skilled in the art will appreciate that many devices can be programed and automated to detect différences from the thresholds as described herein.

SUMMARY OF THE DISCLOSURE

The term and/or, e.g., X and/or Y shall be understood to mean either X and Y or X or Y and shall be taken to provide explicit support for both meanings or for either meaning. As used herein, the term “about”, unless stated to the contrary, refers to +/- 10%, more preferably +/5%, even more preferably +/-1%, of the designated value.

Throughout this spécification the word comprise, or variations such as comprises or comprising, will be understood to imply the inclusion of a stated element, integer or step, or group of éléments, integers or steps, but not the exclusion of any other element, integer or step, or group of éléments, integers or steps. As used herein, the singular form a, an and the include singular and plural references unless the context indicates otherwise. Each embodiment in this spécification is to be applied mutatis mutandis to every other embodiment unless expressly stated otherwise.

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA level and mlgA level in a biological sample from the subject and a ratio thereof and comparing the ratio to a threshold.

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA1 level or dlgA2 level and mlgA1 or mlgA2 level in a biological sample from the subject and a ratio thereof and comparing the ratio to a threshold.

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject comprising the method as described herein.

In one aspect, a différence in the levei or ratio of dimeric and monomeric IgA forms as described herein from a threshold indicates gut barrier dysfonction and/or cirrhosis in the subject or a change in the level or severtty of gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, the subject is retested by the subject method, and the threshold is 5 determined from the subject's earlier test results.

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the level of lgA2 in a biological sample from the subject, wherein an elevated level of lgA2 compared to a threshold indicates 10 gut barrier dysfunction and/or cirrhosis in the subject.

In an aspect, the présent invention provides a method of treating gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA level and mlgA level in a biological sample from the subject and a ratio thereof and comparing the ratio to a threshold, 15 wherein when the subject has a ratio that differs from the threshold, administering the subject a treatment for gut barrier dysfunction and/or cirrhosis.

In an aspect, the présent invention provides a method of treating gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the level of lgA2 in a biological 20 sample from the subject, wherein when the subject has an elevated level of lgA2 compared to a threshold administering the subject a treatment for gut barrier dysfunction and/or cirrhosis.

In an aspect, the présent invention provides a kit for detecting gut barrier dysfunction and/or cirrhosis in a subject comprising:

(i) an agent which binds dlgA and forms a détectable dlgA complex, (ii) an agent which binds mlgA and forms a détectable mlgA complex, wherein (i) binds specifically with dlgA and/or (ii) binds specifically with mlgA.

In an aspect, the présent invention provides a test strip for a latéral flow device comprising at 30 least one sample loading région, wherein:

a) the strip comprises a capture portion comprising an agent which binds dlgA, and

b) the strip comprises a capture portion comprising an agent which binds mlgA, wherein a) is doser to the sample loading région than b) such that the sample contacts a) before b).

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA to mlgA ratio or the mlgA to dlgA ratio in a biological sample from a subject, wherein an elevated dlgA to mlgA ratio compared to a threshold or wherein a decreased mlgA to dlgA ratio compared to a threshold indicates gut barrier dysfunction and/or cirrhosis in a subject.

In an aspect, the présent invention provides a method of treating gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA to mlgA ratio or the mlgA to dlgA ratio in a biological sample from a subject, wherein when the subject has an elevated dlgA to mlgA ratio compared to a threshold or the subject has a decreased mlgA to dlgA ratio compared to a threshold, administering the subject a treatment for gut barrier dysfunction and/or cirrhosis.

In an aspect, the présent invention provides a method of treating gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the level of lgA2 in a biological sample from the subject, wherein when the subject has an elevated level of lgA2 compared to a threshold administering the subject a treatment for gut barrier dysfunction and/or cirrhosis.

In an aspect, the présent invention provides a method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising;

(i) obtaining a biological sample comprising antibodîes, (ii) determining the dimeric and polymeric IgA (dlgA) level in the sample, (iii) determining the monomeric IgA (mlgA) level in the sample, (iv) optionally determining the lgA2 level in the sample, (v) determining the dlgA to mlgA ratio in the sample from (ii) and (iii), wherein an elevated dlgA to mlgA ratio compared to a control and/or an elevated lgA2 level compared to a control indicates gut barrier dysfunction and/or cirrhosis in a subject.

BRIEF DESCRIPTION OF THE FIGURES

A) Shows different IgA forms and their % in the blood. B) Shows an embodiment of the method of the présent invention: Protein L can be used to form a complex comprising monomeric IgA; Mouse anti-human lgA2 can be used to form a complex comprising lgA2; Recombinant Chimeric Secretory Component can be used to form a complex comprising dimeric IgA. The complexes can be visualized by the addition of anti-human IgA colloïdal gold and measurement of absorbance on an Axxin AX-2X reader (Runtime: 30 minutes or less). In some embodiments of the invention only dlgA and mlgA are assessed. In some embodiments of the invention dlgA, lgA2 and mlgA are assessed. In an embodiment of the invention the dlgA complex is formed before the mlgA complex. In an embodiment of the invention, the lgA2 complex is formed before the mlgA complex.

Figure 2 Shows a diagrammatic représentation, including the dimensions, of an example a latéral flow test used in Examples 2 and 3.

Figure 3 Shows a diagrammatic représentation, including the dimensions, of an example of a latéral flow test used in Examples 2 and 3.

Figure 4 lllustrated the steps of one embodiment of a POC test for dlgA, lgA2 and mlgA. Plasma (5μΙ) is added to well A of the cassette. Running buffer (1 drop) is added to well A and incubated for 10 mins. Four drops of running buffer is then added to well B. The test is run for 20-30 mins and read on an Axxin AX-2X reader.

Figure 5 A) Shows an example read out of the POC test of Figure 2. B) Shows results of running the test strip for 20 minutes (30 minutes total assay time). The test strip should show 3 visible lines, representing (in order from the sample well) dimeric IgA, lgA2, and monomeric IgA. If the third line (monomeric IgA) is missing, or if ail three lines are missing, it indicates either failure of the assay, or that the patient is IgA déficient and the test cannot be used in these rare individuals. The intensity of each of the test lines is proportional to the amount of the respective analyte, and is interpreted either visually, or more preferably using an automated reader such as the Axxin AX-2X reader (Axxin Ltd, Melbourne). Using the AX-2X, a numerical readout for each test line is obtained. The workflow for using the Axxin AX-2X is shown in Figure 5A and an example of the readout is provided in Figure 5B.

Figure 6 Shows représentative sample strips of a POC test for dtgA, lgA2 and mtgA. The POC test for dlgA, lgA2 and mlgA was performed on 16 healthy Controls, 77 patients with hepatitis B virus infection, and 121 samples from cirrhotic patients. Cut-offs were established for the level of lgA2 (mean plus two standard déviations of healthy Controls (>3500)) and dlgA/mlgA ratio (mean plus 1 SD of the ratio for healthy Controls (£0.65)).

Figure 7 Shows the assessment of dlgA, lgA2 and mlgA, in healthy individuals (n = 16) compared to individuals with hepatitis B (n = 77) or cirrhosis (n = 121). For the individual IgA species, mlgA was elevated in chronic hepatitis B but not in cirrhotic patients, while lgA2 was elevated in both hepatitis B and cirrhotic patients, with some patients showing highly elevated levels, but the dlgA level showed the largest différence, being highly elevated in cirrhosis and in a proportion of hepatitis B patients (only 16/77 HBV hâve cirrhosis).

Figure 8 Shows the ratio of lgA2/dlgA and dlgA/mlgA in healthy individuals, individuals with hepatitis B or individuals with cirrhosis. Ratios of lgA2/dlgA, or lgA2/mlgA were not significant, but the dlgA/mlgA ratio gave highly significant différences for cirrhosis versus healthy contrais, and for 10/16 hepatitis B patients with cirrhosis, with an overall sensitivity of 81.8% and specificity of 88.3%

Figure 9 Shows analysis of the dlgA/mlgA ratio with Child-Pugh cirrhosis classification. The cirrhotic patients (after excluding multiple time points for individual patients) were further examined according to the severity of cirrhosis according to the Child-Pugh classification, where C-P A is least severe and has good 1-year survival, C-P B is more severe and has moderate 1-year survival, and C-P C is most severe and has poor 1-year survivai. The ratio of dlgA/mlgA was most sensitive in C-P C, and progressively less sensitive in C-P B and C-P A. However by including elevated levels of lgA2, progressively more addîtional cirrhotic patients were identified among the patients in each C-P class, with an overall improvement in sensitivity from 83.7% to 90.8%.

Figure 10 Shows that most of the patients with mild cirrhosis (C-P A) who were négative on the test for dlgA/mlgA ratio were patients where the primary indication for cirrhosis was HBV infection. Ail other causes of cirrhosis (alcohol, cryptogenic, HCV, NASH, HIV, primary biliary cirrhosis, and primary sclerosing cholangitis) had high rates of détection, although numbers were small for some causes reflecting their lower incidence in the community. The IgA test (dlgA/mlgA ratio) had good sensitivity for cirrhosis where the primary cause was alcoholic, cryptogenic, HCV, NASH, primary biliary cirrhosis, and primary sclerosing cholangitis.

Figure 11 Shows that when testing the same cohort as shown in Figures 7 to 9 for alanine ami notransfe rase 1(ALT-1) using the BioPoint ALT1 rapid test only a small proportion (6.6%) of cirrhotic patients hâve evidence of liver disease when tested using ALT, the most commonly used biomarker for liver disease. Of cirrhosis samples (8/121) had an ALT-1 level greater than 40 U/L. The dlgA/mlgA test compléments biochemica! or immunochemical tests for liver function such as the BioPoint ALT1 test in detecting more severe liver disease.

Figure 12 Shows the separate analysis of A) dlgA1 B) dlgA2 and the C) ratio thereof in healthy (n = 17) vs cirrhotic subjects (n =121). D) Provides a diagrammatic représentation of the assay for détection of dlgA1 and dlgA2. In brief, dlgA1 and dlgA2 are bound to chimeric secretory component (CSC) bound to a solid support and treated with 5pL of mouse anti-human lgA1 or 5 mouse anti-human lgA2 which are detected by the addition of anti-mouse IgG gold. The graphs demonstrate that the level of both subclasses of dlgA (dlgA1 and dlgA2) can be measured and that both subclasses are elevated in cirrhosis. The dlgA2/dlgA1 ratios of healthy and cirrhosis samples were ail below 1.

Figure 13 Provides a diagrammatic représentation of two capture methods for detecting mlgA in biological samples in the method comprising détection of dlgA, lgA2 and mlgA shown in Figure 1 B. A) For détection using protein L, Protein L is bound to a solid support, mlgA in the plasma binds protein L and is visualised by the addition of anti-human IgA gold and measurement of absorbance on an Axxin AX-2X reader. B) For détection using anti-human IgA 15 (an antibody that detects total IgA), anti-human IgA is bound to a solid support, mlgA in the plasma is bound by the anti-human IgA and the complex is visualised by the addition of antihuman IgA gold and measurement of absorbance on an Axxin AX-2X reader.

Figure 14 Provides a comparison of Protein L versus anti-lgA to capture mlgA for the mlgA line 20 in the method comprising détection of dlgA, lgA2 and mlgA shown in Figure 1 B. A) Shows that in healthy Controls (n= 8), largely similar results are obtained for the majority of patients (6/8) using Protein L or anti-lgA to capture mlgA. B) Shows that in HIV patients (n = 8) much larger amounts of mlgA are detected using anti-lgA capture, presumably because of compétition for protein L binding by the increased overall immunoglobulin concentrations that are commonly 25 seen during HIV infection due to generalised immune activation.

Figure 15 Provides a comparison of Protein L versus anti-lgA to capture mlgA for the mlgA line in the method comprising détection of dlgA, lgA2 and mlgA shown in Figure IB in subjects with cirrhosis. The results show that for cirrhotic patients, 17/24 had similar values for mlgA using 30 either Protein L or anti-lgA, suggesting that anti-lgA can be used for detecting mlgA in the assay format descripted in Figure 1 B.

Figure 16 Shows that using anti-lgA rather than Protein L in the dlgA/mlgA ratio test results in higher assay specificity in the selected healthy Controls and HIV patients, with none of the 35 healthy or HIV patients having a ratio above the cut-off, The cut-off used for patients and

Controls in this experiment was 1. However there was reduced sensitivity in the selected

cirrhotic patients, with 15/24 positive (ratio >1.0) using anti-lgA to capture mlgA, whereas 19/24 were positive using Protein L to capture mlgA,

Figure 17 shows that using a threshold of a 0.5 for assessing for cirrhosis in a cohort of 5 hepatitis B patients increases the sensitivity. The left panel shows the assessment of hepatitis B subjects using a threshold of 0.65 (which was based on mean + SD of healthy Controls), a 62.5% sensitivity and a 88.5% specificity is achieved. Reducing the threshold to > 0.50 increases the sensitivity to 75.0%, while specificity is still 73,8% (samples between 0.5 and 0.65 highlighted in blue). For assessment of cirrhosis in the hepatitis B patient population, 10 sensitivity is probably more important than specificity as the prevalence of cirrhosis is 20.8% in this hepatitis B cohort, and much higher in hepatitis B cohorts in many populations such as in Africa and Asia. As such, the test can be tailored to suit for use in populations where the infection status for conditions such as hepatitis B or HIV is known.

DISCUSSION OF EMBODIMENTS

Unless defined otherwise, ali technical and scientiflc terms used herein hâve the same meanings as commonly understood by one of ordinary skill in the art to which thîs disclosure belongs. Any matériels and methods similar or équivalent to those described herein can be 20 used to practice or test the present disclosure. Practitioners are particularly directed to and Ausubel et al., Current Protocols in Molecular Biology, Supplément 47, John Wiley & Sons, New York, 1999; Colowick and Kaplan, eds., Methods In Enzymology, Academie Press, Inc.; Weir and Blackwell, eds., Handbook of Experimental Immunology, Vols. I-IV, Blackwell Scientiflc Publications, 1986; for définitions and terms of the art and other methods known to 25 the person skilled in the art.

The détection of spécifie antibody (immunoglobulin (Ig)) classes is recognized as an important step in diagnostic and research methods for human and animal diseases. For example, détection of antigen-specific IgM-class antibodies is widely used as a diagnostic test for 30 infection with viruses such as hepatitis A virus, hepatitis E virus, West Nite virus, dengue viruses, measles virus, rubella virus; and for infection with bacteria such as syphilis (Treponema pallidum), because IgM class antibodies are typically made in the body of an infected host during the acute phase of infection and are détectable for only a few months.

Conversely, IgG-class antibodies commonly persist for life and may indicate either current or past infection with a spécifie agent. For chronic infections such as the human

immunodeficiency virus (HIV) where patients do not spontaneously ciear the virus, détection of IgG-class antîbodies is diagnostic for infection, whereas for others such as hepatitis C virus (HCV) where a proportion of patients do ciear the virus either spontaneously or following treatment, the détection of antigen-specific IgG is not diagnostic of current or ongoing infection.

IgG-class antîbodies are also primarily responsible for antibody-mediated immunity within the plasma compartment of the body.

IgA-class antîbodies bave also been used to aid diagnosîs of infections including hepatitis Ë virus, hepatitis A virus, and dengue viruses, as well as in the study of vaccines and immunity to 10 infections. IgA is attractive for diagnostic purposes, because it is predominantly made during the acute phase of infection, and high levels of antigen-specific IgA can provide a marker of current infection, with or wîthout the concurrent détection of IgM. In addition, because IgA is the prédominant antibody class that is secreted at mucosal épithélial surfaces, its presence is consldered as a marker of mucosal immunity. The rôle of different IgA structural forms as 15 biomarkers for infection, such as specifically dlgA, is not well understood.

The term “IgA” or total IgA” as used herein refers collectively to both subclasses (lgA1 or lgA2) and subtypes “m “d” or “s” of IgA (overall there are six subtypes dlgA, mlgA, slgA, digA2, mlgA2 and slgA2 which fall within the two subclasses).

The term dlgA as used herein refers to dîmeric or higher polymeric forms of IgA which are bound together by a IgA J-chain. A représentative diagram of the structure is shown in Figure IA. The term “mlgA” as used herein refers to monomeric IgA.

The term “slgA” as used herein refers to secretory IgA (dîmeric or higher polymeric forms of IgA which hâve bound with the polymeric Ig receptor (plgR) and subsequently released from the cell after cleavage of plgR to secretory component). The interaction with plgR is dépendent on the presence of the J-chain. A représentative diagram of the interaction is shown in Figure 1 A.

The term “lgA2” as used herein refers to isotype 2 of IgA. In some embodîments, the term refers to monomeric lgA2 (mlgA2). In some embodîments, dîmeric and/or higher polymeric forms (dlgA2) may also be présent. In one embodiment, 80% or less of the dlgA2, or 70% or less of the dlgA2, or 60% or less of the dlgA2, or 50% or less of the dlgA2, or 40% or less of the dlgA2, or 30% or less of the dlgA2, or 20% or less of the dlgA2 in a sample is présent after 35 prior reaction with a binding agent that detect dlgA such as CSC.

An IgA antibody (a total IgA antibody) can be used to detect ail forms of IgA. In the methods and kits described herein an IgA antibody may be used to detect the remaining fraction of IgA after other fractions of the pool of IgA hâve been removed, complexed or detected via other means (e.g. via another antibody that targets a particular fraction of the IgA pool such as an 5 antibody that targets lgA2). For example, an IgA antibody can be used to detect mlgA after dlgA and lgA2 hâve been complexed with antibodies or other molécules such as the chimeric secretory component (CSC) spécifie for dlgA and lgA2, respectively.

As used here “a normal level of alanine aminotransferase 1 (ALT-1 ) or alanine 10 aminotransferase” refers to a subject having a négative resuft when tested with the ALT1 POC test (see Chinese patent application no. CN201610878590.7 “Point of care assays”).

Reference to subject” inciudes humans and a wide range of mammals, higher primates or other animais including wild and domesticated animais, pets, pests and potential vehicles for 15 emerglng infectious diseases. In one embodiment, the subject is a mammat. In an embodiment, the mammal is a human In one embodiment, the subject is a higher primate.. In an embodiment, the higher primate is a human, monkey or ape. In relation to subjects, the subjects may be suspected or diagnosed with having a disease, condition, infection or exposure to a factor associated with one or more of liver disease, gut barrier dysfunction, and 20 cîrrhosis. In an embodiment, the subject may bave a diagnosis of a disease or condition that can resuit in gut barrier dysfunction and/or cirrhosis. In one embodiment, the cîrrhosis is in a subject diagnosed with or suspected of having (non-alcoholîc fatty liver disease) NAFLD. In one embodiment, the subject is diagnosed with or suspected of having (non-alcoholic steatohepatitis) NASH. In one embodiment, the subject is diagnosed with or suspected of 25 having viral hepatitis. In one embodiment, the subject is diagnosed with or suspected of having hepatitls B. In one embodiment, the subject is diagnosed with or suspected of having hepatitis C. In one embodiment, the subject is diagnosed with hepatitis D (in addition to being diagnosed with hepatitis B). In one embodiment, the subject is diagnosed with or suspected of having HIV.

The term “gut barrier dysfunction” also referred to as “leaky gut”, “increased intestinal permeability or “leaky gut syndrome refers to a digestive condition were the permeability of the intestinal barrier is increased and components from inside the digestive tract (e.g. bacteria, toxins (e.g. LPS), proteins, amino acids) which through leak the intestinal wall and into the circulatory system. Some of the components that leak into the blood stream can ultimately 35 accumulate in the liver and can contribute to cirrhosis. There are a number of causes/contributing factors to gut barrier dysfunction, including but not limited to, diet, microbial imbalances in the digestive tract, antibiotic exposure, bacterial infections, viral infections (e.g. HIV and hepatitis), cirrhosis, inflammatory bowel disease, Crohn’s disease, cardiovascular disease, pulmonary disease, auto immune disease. In one embodiment, the gut barrier dysfunction is associated with cirrhosis. In one embodiment, the gut barrier dysfonction is 5 associated with HIV infection. In one embodiment, the gut barrier dysfunction is associated with hepatitis.

The term “cirrhosis” also known as “liver cirrhosis or “hepatic cirrhosis” as used herein refers a chronic disease of the liver marked by degeneration of cells, inflammation, and fibrous 10 thickening of tissue. Cirrhosis is characterised by irréversible scarring of the liver. Subjects with cirrhosis may be treated to prevent/slow down further development of scar tissue in the liver or may be treated with a liver transplant. The cirrhosis may be caused by one or more of: alcohol, NAFLD, NASH, viral hepatitis, HIV, cryptogenic, primary biliary cirrhosis, and primary sclerosing cholangitis. In one embodiment, cirrhosis is caused by alcoholism. In one 15 embodiment, the cirrhosis is in a subject diagnosed with NAFLD. In one embodiment, the subject is diagnosed with NASH. In one embodiment, the subject is diagnosed with hepatitis. In one embodiment, the subject is diagnosed with hepatitis B. In one embodiment, the subject is diagnosed with hepatitis C. In one embodiment, the subject is diagnosed with hepatitis D (in addition to being diagnosed with hepatitis B). In one embodiment, the subject is diagnosed with 20 HIV. Clinically, a diagnosis of a subject as having cirrhosis is an indication for priority treatment (e.g. in hepatitis B subjects).

Suitable “biological sample for the methods and kits as described herein includes any sample containing or suspected of containing antibodies that one wishes to detect including, but not 25 limited to, biological fluids e.g. whole blood or a fraction thereof, plasma, sérum or gingivo creviscular fluid. In an embodiment, the sample is whole blood. In an embodiment, the sample is any sample containing IgA antibodies. In an embodiment, the sample is a whole blood fraction, for example whole blood depleted of IgM and/or IgG. In an one embodiment, the sample is purified or partially purified. In an embodiment the sample is plasma. In an 30 embodiment, the sample is sérum. In an embodiment, the gingivo creviscular fluid. In an embodiment, biological samples are collected from a subject at two more time points. In an embodiment, the sample is obtained in close proximity to the point-of care device. In an embodiment, the sample is obtained previously for a subject. In an embodiment, the sample is stored for a period of time at about 4°C, about 15’C or about 24°C before use. In an 35 embodiment, the sample is dried, freeze dried or snap frozen.

Assay types

In an aspect, the present invention provides a method for detecting gut barrier dysfonction and/or cirrhosis in a subject, the method comprisîng determining the dlgA leve! and mlgA level în a biological sampte from the subject and a ratio thereof and comparing the ratio to a 5 threshold. In one embodiment, the method comprises detecting gut barrier dysfunction in the subject. In one embodiment, the method comprises detecting cirrhosis in the subject.

The method is suitable for in vitro use and may be performed in an assay format known to a person skilled în the art, încluding as an immunoassay, chromatographie assay or a 10 homogenous assay.

As used herein, “immunoassay refers to assays using immunoglobulîns or parts thereof that are capable of detecting and quantifying a desired biomarker such as IgA and subtypes and subclasses thereof. The immunoassay may be one of a range of immune assay formats known 15 to the skilled addressee. A wide range of immunoassay techniques are available, such as those described in Wild D. “The Immunoassay Handbook” Nature Pubiishing Group, 4th Edition, 2013 and subséquent innovations.

Eiectrochemiluminescence (ELICA), enzyme-linked immunosorbet assay (ELISA), fluorescent 20 immunosorbent assay (FIA) and Luminex LabMAP immunoassays are examples of suitable assays to detect levels of the biomarkers. In one example, a binding agent e.g. an antibody or Protein L is attached to a support surface and a further binding reagent/antibody comprisîng a détectable group binds to the antibody or a substrate bound by the antibody. Examples of detectable-groups include, for example and without limitation: fluorochromes, enzymes, 25 epitopes for binding a second binding reagent (for example, when the second binding reagent/antibody is a mouse antibody, which is detected by a fluorescentiy-labelled anti-mouse antibody), for example an antigen or a member of a binding pair, such as biotin. The surlace may be a planar surface, such as in the case of a typical grid-type array (for example, but without limitation, 96-well plates and planar microarrays) or a non-planar surface, as with 30 coated bead array technologies, where each species of bead is labelled with, for example, a fluorochrome (such as the Luminex technology described in U. S. Patent Nos. 6,599,331, 6, 592,822 and 6,268,222), or quantum dot technology (for example, as described in U. S. Patent No. 6,306,610). Such assays may also be regarded as laboratory information management Systems (LIMS): 35

Latéral flow assays and more recently non-lateral flow and microfluidics provide a useful set up

for biological assays. Such assays can be qualitative, quantitative or semi quantitative. In microfluidic devices, small volumes of liquid are moved through microchannels generated in, for example, a chip or cartridge. A wide range of détection reagents are availabfe including métal nanoparticles, coloured or luminescent materials. Résonance enhanced adsorption 5 (REA) of bioconjugated métal nanoparticles offers rapid processing times and other advantages. These devices hâve been combined with barcode technologies to identity the patient and the analyte being tested. Computer software and hardware for assessing input data are encompassed by the present disclosure. Point-of-care devices and arrays and high throughput screening methods are also contemplated.

Qualitative assays providing an intermediate or definitive diagnosis require integrated thresholds, gates or Windows that permit scoring of samples as likely or not to hâve a condition. Instrument readers and software are often employed to collate data and process it through a diagnostic algorithm or decision tree

In the bead-type immunoassays, the Luminex LabMAP System can be utilized. The LabMAP System incorporâtes polystyrène microspheres that are dyed internally with two spectraily distinct fluorochromes. Using précisé ratios of these fluorochromes, an array is created consisting of different microsphere sets with spécifie spectral addresses. Each microsphere set 20 can possess a different reactant on its surface. Because microsphere sets can be distinguished by their spectral addresses, they can be combined, allowing up to 100 different analytes to be measured simultaneousiy in a single reaction vessel A third fluorochrome coupled to a reporter molécule quantifies the biomolecular interaction that has occurred at the microsphere surface. Microspheres are interrogated individually in a rapidly flowing fluid stream as they pass by two 25 separate lasers in the Luminex analyzer. High-speed digital signal processing classifies the microsphere based on its spectral address and quantifies the reaction on the surface in a few seconds per sample.

In one embodiment, the assay is a homogenous assay, meaning an assay format allowing the 30 make an assay-measurement by a simple mfx and read procedure without the necessity to process samples by separating or washing. Such assays do not include an immunosorbent solid phase step. In one embodiment, the homogenous assay is time-resolved Forster résonance energy transfer (FRET).

In one embodiment, the assay is a flow cytometry, bead array, latéral flow, cartridge, microfluidic or immunochromatographic based method or the like. !n one embodiment, the assay is a point-of-care assay, in one embodiment, the point-of-care assay reader îs an Axxin AX-2X-type reader, or équivalent or modified device. For example, the device may be modified to include LEDs and filters of the appropriate wavelength for the subject assays.

Agents for determining the level of dlgA, mlgA or lgA2

The agent for determining the level of IgA or a subclass or subtype thereof in the sample can be any binding agent known to a person skilled in the art that binds IgA or a subtype or subtype thereof and forms a détectable complex. The binding agent may conveniently be an antibody or an antigen-binding fragment thereof. Other suitable binding agents are known in the art and 10 include antigen binding constructs such as binding proteins, binding peptides, affimers, affibodies, aptamers, nanobodies and mimetics.

Methods of making antigen-specific binding agents, including antibodies and their dérivatives and analogs and mimetics thereof, are well-known in the art. Polyclonal antibodies can be 15 generated by immunization of an animal. Monoclonal antibodies can be prepared according to standard (hybridoma) methodology. Antibody dérivatives and analogs, including humanized antibodies can be prepared recombinantly by isolating a DNA fragment from DNA encoding a monoclonal antibody and subcloning the appropriate V régions into an appropriate expression vector according to standard methods. Phage display and aptamer technoiogy ts described in 20 the literature and permit in vitro clonal amplification of antigen-specific binding reagents with very affinity low cross-reactivity. Phage display reagents and Systems are available commercially, and include the Recombinant Phage Antibody System (RPAS), commercially available from Amersham Pharmacia Biotech, Inc. of Pîscataway, New Jersey and the pSKAN Phagemid Display System, commercially available from MoBiTec, LLC of Marco Island, Florida. 25 Aptamer technoiogy is described for exemple and without limitation tn US Patent Nos.

5,270,163; 5,475,096; 5,840,867 and 6,544,776. The skilled person will be able to select binding agents for use in the methods as described herein.

In one embodiment, the binding agent is an antibody or an antigen-binding fragment or 30 dérivative thereof, an antigen-binding construct such as an affimer, affibody, aptamer, nanobody and mimetics or a ligand or binding part thereof. In one embodiment, the binding agent is immobilised on a support, such as, latéral flow test strip.

Suitable binding agents for determining the dlgA level include any binding agent that 35 specifically or non-specifically binds dlgA and forms a détectable dlgA complex. tn an embodiment, the binding agent is non-specific, binding other forms of IgA which may be removed from the sample by binding with another binding agent before use with the dlgA binding agent. In one embodiment, the binding agent is spécifie for dlgA. In an embodiment, the binding agent is a dlgA antibody. In one embodiment, the binding agent is an anti-dlgA1 antibody, an anti-dlgA2 antibody or a combination thereof. In one embodiment, the binding agent is an antibody which binds the J-chain of dlgA (e.g. anti-lgA J chain LifeSpan Biosciences Cat no. LS-B12942 or OriGene Technologies Cat no. AM20272PU-M). In an embodiment, the binding agent is a plgR. The term “plgR” as used herein refers to the polymeric Ig receptor induding recombinant and modified forms thereof. In some embodiments, the plgR is a plgR as described in the Applicants previous application WO/2014/071456. In some embodiments, the plgR is produced in glycan déficient cells such as glycan déficient CHO cells to enhance preferential binding to dlgA over IgM. In one embodiment, plgR is modified to bind dlgA but not substantially bind IgM by removal of human domain 1. In an embodiment, human domain 1 is replaced by rabbit domain 1. In some embodiments, the recombinant plgR is derived from a primate such as human plgR and comprises at least one immunoglobulin-like domain derived from a non-primate such as rabbit, mouse, rat. In some embodiments, the recombinant plgR comprises an amino acid sequence set out in SEQ ID NO:2, or SEQ ID NO: 4, or SEQ ID NO: 6, or SEQ ID NO: 12, or SEQ ID NO: 14, or SEQ ID NO: 16 set out in WO/2014/071456 or an dlgA-binding part thereof or and a dlgA binding variant thereof. In an embodiment, the plgR is the chimeric secretory component. The chimeric secretory component comprises rabbit domain 1 and human domains 2-5 as described in SEQ ID NO: 5 or SEQ ID NO: 6 of WO/2014/071456. In an embodiment, plgR is conjugated to a détectable tag.

Suitable binding agents for determining the mlgA level include any binding agent that binds mlgA and forms a détectable mlgA complex. In one embodiment, the binding agent is spécifie for mlgA, In one embodiment, the binding agent is an anti-mlgA antibody. In an embodiment, the binding agent is an anti-lgA antibody (e.g. Mouse Anti-human IgA Sigma Cat no: I0636. In an embodiment, the binding agent is Protein L. The term “Protein L refers to an immunoglobulin (Ig) binding protein original derived from the bacteria Peptostreptococcus magnus. Protein L can bind the kappa light chain of antibodies without interfering with the antibodies antigen binding site. It can bind ail classes of Ig (IgG, IgM, IgA, IgE and IgD). The term is intended to cover modified and recombinant versions of Protein L. Protein L can be obtained, for example, from ThermoFisher Scientific (Protein L Cat no. 21189).

Suitable binding agents for determining the mlgA1 level include any binding agent that binds mlgA and forms a détectable mlgA complex. In one embodiment, the binding agent is spécifie for mlgA1. In one embodiment, the bînding agent is an antî-mlgA1 antibody. For example, an antibody that binds to the same région of the IgA molécule that is occupied by J-chain in dlgA would be expected to be spécifie for mlgA over dlgA.

Surtable binding agents for determining the lgA2 level include any binding agent that binds lgA2 and forms a détectable IgA complex. In one embodiment, the binding agent is spécifie for lgA2. In one embodiment, the binding agent is spécifie for mlgA2. In one embodiment, the binding agent is an anti-human lgA2 monoclonal antibody (for example, Nordic MUbio, Cat MAHu/lgA2).

In an embodiment, an antibody as described herein may be conjugated to a détectable tag.

As used herein, the term “binds” or “binding refers to the interaction of a binding agent e.g. a protein or an antigen binding domain thereof with an antigen means that the interaction is 15 dépendent upon the presence of a particular structure (e.g., an antigenic déterminant or epitope) on the antigen. For example, an antibody recognizes and binds to a spécifie protein structure rather than to proteins generally. If an antibody binds to epitope A, the presence of a molécule containing epitope “A” (or free, unlabelled “A”), in a reaction containing labelled “A and the antibody, will reduce the amount of labelled “A bound to the antibody.

As used herein, the term “specifically binds or “spécifie for X shall be taken to mean a binding agent of the disclosure reacts or associâtes more frequently, more rapidly, with greater duration and/or with greater affinity with a particular antigen or antigens or cell expressing same than it does with alternative antigens or cells. For example, a protein that specifically binds to an 25 antigen binds that antigen with greater affinity (e.g., 20 fold or 40 fold or 60 fold or 80 fold to 100 fold or 150 fold or 200 fold greater affinity), avidity, more readily, and/or with greater duration than it binds to other antigens, e.g., to other subclasses of IgA or to antîgens commonly recognized by polyreactive natural antibodies (i.e., by naturally occurring antibodies known to bind a variety of antigens naturally found in humans). It is also understood by reading 30 this définition that, for example, a protein that specifically binds to a first antigen may or may not specifically bind to a second antigen.

In one embodiment, the method comprises forming the dlgA complex before the mlgA complex. In one embodiment, the lgA2 complex is formed before the mlgA complex.

In one embodiment, the method comprises contacting the sample with a dlgA binding agent and forming a détectable dlgA complex, foliowed by contacting the sample with a mlgA binding agent and forming a détectable mlgA complex. In one embodiment, the method comprises contacting the sample with a dlgA binding agent and forming a détectable dlgA complex, 5 foliowed by contacting the sample with an lgA2 binding agent and forming a détectable lgA2 complex, foliowed by contacting the sample with a mlgA binding agent and forming a détectable mlgA complex.

In one embodiment, the method comprises contacting the sample with a plgR or anti-lgA J 10 chain antibody and forming a détectable dlgA complex, foliowed by contacting the sample with

Protein L, an anti-lgA or an anti-mlgA antibody and forming a détectable mlgA complex. In one embodiment, the method comprises contacting the sample with a plgR or anti-lgA J chain antibody and forming a détectable dlgA complex, foliowed by contacting the sample with an anti-lgA2 antibody and forming a détectable lgA2 complex, foliowed by contacting the sample 15 with Protein L, an anti-lgA or an anti-mlgA antibody and forming a détectable mlgA complex.

In one embodiment, the method comprises contacting the sample with a dlgA binding agent and forming a détectable dlgA complex, foliowed by contacting the sample with a mlgA1 binding agent and forming a détectable mlgA1 complex. In one embodiment, the method 20 comprises contacting the sample with a dlgA binding agent and forming a détectable dlgA complex, foliowed by contacting the sample with an lgA2 binding agent and forming a détectable lgA2 complex, foliowed by contacting the sample with a mlgA1 binding agent and forming a détectable mlgA complex.

In one embedment, the détectable complexes referred to herein are directly détectable or indirectly détectable.

In one embodiment, the détectable complexes described herein are directly détectable. In one embodiment, the binding agent is conjugated to a détectable marker or microparticles 30 comprising a détectable marker, that provide a détectable signal. In one embodiment, the detectible marker is selected from one or more of: colloïdal gold, a magnetic agent, coloured latex, carboxycellulose, carbon nanoparticles and fluorescent labels. In one embodiment, the détectable marker is a visible détectable marker.

In one embodiment, the détectable complexes are indirectly détectable (can be detected by the addition of a further reagent that binds to one or more of î) the binding agent, ii) the IgA subclass or subtype bound by the binding agent, üi) the complex, and iv) a combination thereof).

In one embodiment, the reagent that detects the complex is a reagent that detects the IgA or a subclass or subtype thereof présent in the complex. In an embodiment, the reagent is an antibody that detects IgA or a subclass or subtype thereof that is prepared/derived from a species that is different to the subject from which the biological sample has been obtained. For example, if the subject is a human, the reagent detects human IgA or a subclass or subtype thereof (e.g. an anti-human IgA antibody that is prepared/derived from another species e.g. a mouse, goat, rabbit, donkey etc.). For example, if the subject is a monkey the reagent detects monkey IgA or a subclass or subtype thereof (e.g. an anti-monkey IgA antibody prepared/derived from another species e.g. a mouse, goat, rabbit, donkey, human etc.).

In one embodiment, the subject is a human and the reagent is selected from one or more of: anti-human IgA colloïdal gold, anti-human IgAI colloïdal gold and anti-human lgA2 colloïdal gold. In one embodiment, the subject is a human and the reagent is anti-human IgA colloïdal gold. In one embodiment, the subject is a human and the reagent is anti-human IgAI colloïdal gold. In one embodiment, the subject is a human and the reagent is anti-human lgA2 colloïdal gold.

In one embodiment, the subject is a monkey and the reagent is selected from one or more of: anti-monkey IgA colloïdal gold, anti-monkey IgAI colloïdal gold and anti-monkey lgA2 colloïdal gold. In one embodiment, the subject is a monkey and the reagent is anti-monkey IgA colloïdal gold. In one embodiment, the subject is a monkey and the reagent is anti-monkey IgAI colloïdal gold. In one embodiment, the subject is a monkey and the reagent is anti-monkey lgA2 colloïdal gold.

In one embodiment, the détectable complex comprises one or more of: colloïdal gold, a magnetic agent, coloured latex, carboxycellulose, carbon nanoparticles and a fluorescent label.

Thresholds

Based on the disclosure herein a person skilled in the art will appreciate that the level of one or more of the dlgA level, mlgA level, mlgA1 level, lgA2 level, ratio of the dlgA level to the mlgA level, ratio of the mtgA level to the dlgA level, ratio of the dlgA level to the mlgA1 level, and the ratio of the m!gA1 level to the dlgA level, can be compared relative to a threshold to détermine if a subject has gut barrier dysfunction and/or cirrhosis. In an embodiment, comparison to the

threshold can be used to détermine if a subject has gut barrier dysfunction. tn an embodiment, comparison to the threshold can be used to détermine if a subject has cirrhosis.

The term “threshold” refers to a value, range, or cut-off that must be met, exceeded or not 5 exceeded to détermine is a subject has gut barrier dysfunction and/or cirrhosis.

In one embodiment, the present application illustrâtes or describes the invention with disease thresholds, that is, the threshold met or above which a subject is assessed as having gut barrier dysfunction and/or cirrhosis or a ievel thereof. As the skilled person will appreciate, the 10 levels, and/or ratios described herein in healthy or affected subjects are useful for assessing the absence of gut barrier dysfunction and/or cirrhosis or a Ievel thereof in such subjects.

The threshold can be set relative to a control or standard processed at the same time as the standard. Altematively, the threshold may be predetermined based on a data set produced 15 using the spécifie reagents and platform for a given embodiment of the test.

In one embodiment, the threshold is a colour intensity that can be assessed visually. In one embodiment, the colour intensity can be represented as a numerical value or numerical range.

In an embodiment, the threshold is set relative to a control. The term control includes any sample or group of samples that can be used to establish a knowledge base of data from a subject or subjects with a known disease status.

In one embodiment, the levels of one or more of: dlgA, mlgA, migA1, lgA2, ratio of the dlgA 25 Ievel to the mlgA Ievel, ratio of the mlgA Ievel to the dlgA Ievel, ratio of the dlgA Ievel to the mlgA1 Ievel, ratio of the mlgA1 Ievel to the dlgA Ievel can be compared to a threshold Ievel in one or more populations/groups of control subjects selected from: a normal subject cohort wherein the subjects hâve been predetermined not to hâve one or more of gut barrier dysfunction, liver disease, cirrhosis, NAFLD, HASH, hepatitis B and hepatitis C; and a 30 population recently infected or newly diagnosed with a disease or condition that causes gut barrier dysfunction, liver disease, cirrhosis, NAFLD, HASH, hepatitis B and hepatitis C. Typically a control is a group of healthy subjects.

Thresholds may be selected that provide an acceptable ability to predict gut barrier dysfunction 35 and/or cirrhosis in a subject. In illustrative examples, receiver operating characteristic (ROC) curves are calculated by plotting the value of one or more variables versus its relative frequency in two populations (called arbitrarily disease and normal). For any of the above listed markers, a distribution of level(s) for subjects in the two populations will likely overlap. Under such conditions, a test level does not absolutely distinguish disease and normal with 100% accuracy, and the area of overlap indicates where the test cannot distinguish between groups. Accordingly, in some embodiments, a threshold or range is selected, above which (or below which) the test is considered to be positive and below which the test is considered to be négative.

In one embodiment, the threshold is set as the mean value of the control group, the mean value plus one standard déviation of the control group, the mean value plus two standard déviations of the control group, the mean value plus three standard déviations of the control group, or a preseîected level in the control group. In one embodiment, the threshold is set as the mean plus one standard déviation of a control group. In one embodiment, the threshold is set as the mean plus two standard déviations of a control group. In one embodiment, the threshold is set as the mean plus three standard déviations of a control group.

Altematively, or in addition, thresholds may be established by obtaining a level of an IgA or a subclass or subtype thereof from the same patient, to which later results may be compared. In these embodiments, the individual in effect acts as their own control. In addition an individual may act as a control for e.g. a low level of cirrhosis (e.g. Child-Pugh A) which will allow their progress or the effectiveness of treatment regimens to be measured overtime. In markers that increase with disease severity, an increase over time in the same patient can indicate a worsening or development of disease or risk of disease or a faiiure of a treatment regimen, while a decrease or maintenance of a value over time can indicate remission, inhibition of progress of a disease State or success of a treatment regimen. Various further Controls will be routinely applied by the skilled artisan.

In some embodiments, different thresholds may be required for populations with different diseases/conditions and/or different stages of a disease/conditions. An internai standard reflective of the thresholds described herein may include as an internai control in the methods and kits as described herein.

In one embodiment, of the method described herein a différence from the threshold indicates gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, the différence is an élévation relative to a threshold. The term “elevated” or “elevates or “elevated” refers to having a higher or greater level of a protein or ratio of two proteins levels compared to a threshold. In an embodiment, the protein level or ratio of two proteins is elevated, by at least 2%, or by at

least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 35%, or at least 40%, or at least 45%, or at least 50%, or at least 60%, or at least 70%, or at least 80%, or at least 90%, or at least 100%, or at least 200%, or at least 300% compared the threshold. In one embodiment, the différence is a decrease relative to a threshold. The term 5 “decrease” or “decreases” or “decreased refers to abolishing, decreasing or having a lower level of a protein or ratio of two protein levels compared to a threshold. In an embodiment, the protein level or ratio of two proteins is decreased is by at least 2%, or at least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 35%, or at least 40%, or at least 45%, or at least 50%, or at least 60%, or at least 70%, or at least 80%, or 10 at least 90%, or at least 100% compared to the threshold.

In some embodiments, the assay comprises two or more thresholds.

In one embodiment, an elevated dlgA to mlgA ratio or etevated dlgA1 to mlgA1 ratio or dlgA2 15 to mlgA2 ratio compared to a threshold indicates gut barrier dysfonction and/or cirrhosis in the subject. In one embodiment, a decreased mlgA to dlgA ratio or mlgA1 to dlgA1 ratio or mlgA2 to dlgA2 ratio compared to a threshold indicates gut barrier dysfonction and/or cirrhosis in the subject.

In one embodiment, a dlgA to mlgA ratio greater than or equal to a threshold of about 0.5 to 0.8 20 indicates gut barrier dysfonction and/or cirrhosis in the subject. In one embodiment, a dlgA to mlgA ratio greater than or equal to a threshold of about 0.6 to 0.7 indicates gut barrier dysfonction and/or cirrhosis in the subject. In one embodiment, a dlgA to mlgA ratio greater than or equal to a threshold of about 0.65 indicates gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, a dlgA to mlgA ratio greater than or equal to a threshold of 25 about 1 indicates gut barrier dysfonction and/or cirrhosis in a subject with HIV. In one embodiment, a dlgA to mlgA ratio greater than or equal to a threshold of about 0.5 indicates gut barrier dysfunction and/or cirrhosis in a subject with hepatitis B.

In one embodiment, a mlgA to dlgA ratio of less than or equal to a threshold of about 1.2 to 2.5 30 indicates gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, a mlgA to dlgA ratio of less than or equal to a threshold of about 1.5 to 2.2 indicates gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, a mlgA to dlgA ratio of less than or equal to a threshold of about 1.54 indicates gut barrier dysfunction and/or cirrhosis in the subject. In one embodiment, a mlgA to dlgA ratio less than or equal to a threshold of about 35 1 indicates gut barrier dysfonction and/or cirrhosis in a subject with HIV, or wherein a mlgA to dlgA ratio equal to or less than a threshold of about 2 indicates gut barrier dysfunction and/or cirrhosis in a subject with hepatitis B.

In one embodiment, an elevated level of lgA2 compared to a threshold indicates gut barrier 5 dysfunction and/or cirrhosis in the subject. In one embodiment, an lgA2 level of greater than or equal to a threshold of 3500 DA indicates gut barrier dysfunction and/or cirrhosis in the subject.

In one embodiment, when the mlgA level is elevated relative to a threshold, then the dlgA level is compared to a dlgA threshold wherein a différence from the dlgA threshold indicates gut barrier dysfunction and/or cirrhosis in the subject, and wherein when the mlgA level is decreased relative to a threshold the ratio of the dlgA level and mlgA level is determined and compared to a ratio threshold, wherein a différence from the ratio threshold indicates gut barrier dysfunction and/or cirrhosis in the subject. In an embodiment, dlgA and mlgA are dlgA1 and mlgA1. In an embodiment, dlgA and mlgA are dlgA2 and mtgA2. in one embodiment, dlgA is measured by an anti-lgA antibody. In an embodiment, the mlgA threshold is 5000 DA.

As used herein “DA” is an absorbance unit provided by a device that measures absorbance such as an Axxin AX-2X reader. Based on the information provided herein, a person skilled in the art could readily détermine the équivalent threshold on équivalent and similar devices. In an alternate embodiment, the results of the assay could be converted to mg/mL.

Diagnostic sensitivity and specificity

As used herein “diagnostic sensitivity” refers to a diagnostic methods ability to correctly identify those with the disease (true positive rate). As used herein “diagnostic specificity refers to a 25 diagnostic methods ability to correctly identify those without the disease (true négative rate).

In one embodiment, the method as described herein has a diagnostic sensitivity of about 50 to about 98% for gut barrier dysfunction. In one embodiment, the method has a diagnostic sensitivity of about 60 to about 95% for gut barrier dysfunction. In one embodiment, the method 30 has a diagnostic sensitivity of about 70 to about 90% for gut barrier dysfunction. In one embodiment, the method has a diagnostic sensitivity of about 75 to about 90% for gut barrier dysfunction. In one embodiment, the method has a diagnostic sensitivity of about 75 to about 85% for gut barrier dysfunction. In one embodiment, the method as described herein has a diagnostic sensitivity of at least 85% for gut barrier dysfunction. In one embodiment, the 35 method as described herein has a diagnostic sensitivity of at least 80% for gut barrier dysfunction.

ln one embodiment, the method as described herein has a diagnostic sensitivity of about 50 to about 98% for cirrhosis. In one embodiment, the method has a diagnostic sensitivity of about 60 to about 95% for cirrhosis. In one embodiment, the method has a diagnostic sensitivity of 5 about 70 to about 90% for cirrhosis. In one embodiment, the method has a diagnostic sensitivity of about 75 to about 90% for cirrhosis. In one embodiment, the method has a diagnostic sensitivity of about 75 to about 85% for cirrhosis. In one embodiment, the method as described herein has a diagnostic sensitivity of at toast 85% for cirrhosis. In one embodiment, the method as described herein has a diagnostic sensitivity of at least 80% for cirrhosis.

In one embodiment, the method as described herein has a diagnostic specificity of about 50 to about 98% for gut barrier dysfunction. In one embodiment, the method has a diagnostic specificity of about 60 to about 95% for gut barrier dysfunction. In one embodiment, the method has a diagnostic specificity of about 70 to about 90% for gut barrier dysfunction. In one 15 embodiment, the method has a diagnostic specificity of about 75 to about 90% for gut barrier dysfunction. In one embodiment, the method has a diagnostic specificity of about 75 to about 85% for gut barrier dysfunction. In one embodiment, the method as described herein has a diagnostic specificity of at least 85% for gut barrier dysfunction. In one embodiment, the method as described herein has a diagnostic specificity of at least 80% for gut barrier 20 dysfunction.

In one embodiment, the method as described herein has a diagnostic specificity of about 50 to about 98% for cirrhosis. In one embodiment, the method has a diagnostic specificity of about 60 to about 95% for cirrhosis. in one embodiment, the method has a diagnostic specificity of 25 about 70 to about 90% for cirrhosis. In one embodiment, the method has a diagnostic specificity of about 75 to about 90% for cirrhosis. In one embodiment, the method has a diagnostic specificity of about 75 to about 85% for cirrhosis. In one embodiment, the method as described herein has a diagnostic specificity of at least 85% for cirrhosis. In one embodiment, the method as described herein has a diagnostic specificity of at least 80% for cirrhosis.

In one embodiment, when the level of lgA2 is not determined, the method has one or more of: i) a diagnostic sensitivity of at least 54% for cirrhosis with a Child-Pugh score of A; ii) a diagnostic sensitivity of at least 69% for cirrhosis with a Child-Pugh score of B; and iii) a diagnostic sensitivity of at least 87% for cirrhosis with a Child-Pugh score of C.

In one embodiment, when the level of lgA2 is determined, the method has one or more of: i) a diagnostic sensitivity of at least 72% for cirrhosis with a Child-Pugh score of A; ii) a diagnostic sensitivity of at least 76% for cirrhosis with a Child-Pugh score of B; and ni) a diagnostic sensitivity of at least 88% for cirrhosis with a Child-Pugh score of C.

In one embodiment, for cirrhosis with a Child-Pugh score of A the method has one or more of: i) a diagnostic sensitivity of at least 90% for alcohoüc cirrhosis; ii) a diagnostic sensitivity of at least 70% for cryptogenic cirrhosis; iii) a diagnostic sensitivity of at least 40% for hepatitis B cirrhosis; iv) a diagnostic sensitivity of at least 76% for hepatitis C cirrhosis; v) a diagnostic sensitivity of at least 90% for NASH cirrhosis; vl) a diagnostic sensitivity of at least 90% for PBC; and vii) a diagnostic sensitivity of at least 90% for PSC.

In an embodiment, the method has a combined higher sensitivity and specificity than APRl (aspartate aminotransferase - platelet ratio index) for the détection of stage F4 fibrosis of the liver.

Methods of treatment

The présent invention also relates to a method of treating gut barrier dysfonction and/or cirrhosis in a subject determined to hâve such a condition using a method of the invention. In an embodiment, the method is for treating gut barrier dysfunction. In an embodiment, the method is for treating cirrhosis.

In one embodiment, the treatment is selected from: surgical intervention (e.g. to remove scar tissue or a liver transplant), administration of a therapeutic, administration of a prophylactic drug, dietary intervention, exercise intervention, or probiotic or microbiotic intervention such as fécal transplant”, based on results.

In one embodiment, the therapeutic or prophylactic is selected from one or more of: Disulfiram, Naltrexone, Acamprosate, Corticosteroids, Prednisone, Prednisone and Azathioprine, Penicillamine, Trientine, Deferoxamine, Ciprofloxacin, Norofloxacin, Ceftriaxone, Ofloxacin, Amoxicillin-clavulanate, Vitamin K, Phytonadione, Bumetanide, Furosemide, Hydrochlorothiazide, Chlorothiazide, Amiloride, Triamterene and Spironolactone.

In one embodiment, the method comprises re-testing at a later time point to détermine progression and/or response to treatment.

Kits

In various related aspects, the present invention also relates to devices and kits for performing the methods described herein. Suitable kits comprise at least some, preferably ail of, the reagents sufficient for performing at least one of the methods described herein.

In an aspect, the present invention provides a kit for detecting gut barrier dysfunction and/or cîrrhosis in a subject comprising: (i) an agent which binds dlgA and forms a détectable dlgA complex, (ii) an agent which binds mlgA and forms a détectable mlgA complex, wherein (i) binds specifically with dlgA and/or (ii) binds specifically with mlgA.

In an aspect, the present invention provides a kit for detecting gut barrier dysfunction and/or cirrhosis in a subject comprising: (i) an agent which binds dlgAI and forms a détectable dlgA complex, (ii) an agent which binds mlgA1 and forms a détectable mlgA1 complex, wherein (i) binds specifically with dlgA and/or (ii) binds specifically with mlgA.

In an aspect, the present invention provides a kit for detecting gut barrier dysfunction and/or cirrhosis in a subject comprising: (i) an agent which binds dlgA2 and forms a détectable dlgA complex, (ii) an agent which binds mlgA2 and forms a détectable mlgA2 complex, wherein (i) binds specifically with dlgA and/or (ii) binds specifically with mlgA.

In one embodiment, the kit further comprises a agent which binds and forms a détectable lgA2 complex. In one embodiment, one or more of the agents is bound to a solid support.

In one embodiment, the kit further comprises a reagent which detects one or more of the mlgA complex, dlgA complex, and lgA2 complex. In one embodiment, the reagent is anti-human IgA colloïdal gold.

In one embodiment, the kit comprises a strip, chip or cartridge for use in a latéral flow assay. In one embodiment, the kit comprises a strip, chip or cartridge for use on point-of care device.

In one embodiment, the kit comprises a test strip for a latéral flow device comprising at least one sample loading région, wherein:

a) the strip comprises a capture portion comprising an agent which binds dlgA, and

b) the strip comprises a capture portion comprising an agent which binds mlgA, wherein a) is doser to the sample loading région than b) such that the sample contacts a) before b). In one embodiment, the strip further comprises, between a) and b), is c) a capture portion comprising an agent which binds lgA2.

A sample can flow through the device, simultaneously or subsequently a détection reagent is flowed through the device which binds IgA through the device. Detecting the détection reagent bound to IgA can be performed in a subséquent step e.g. by measuring absorbance. In an embodiment, the détection reagent: is selected from one or more of: anti-human IgA colloïdal gold, anti-human lgA1 colloïdal gold and anti-human lgA2 colloïdal gold.

In one embodiment, the kit can be stored at about 4’C. In one embodiment, the kit can be stored at about 15°C. In one embodiment, the kit can be stored at about 23’C.

In one embodiment, the kit comprises an immunoassay test strip. In one embodiment, the 15 immunoassay test strip comprises a sample loading portions comprising binding agents and two or more capture portions. In one embodiment, the biological sample is contacted with the binding agents by applying the sample to a sample portion of an immunoassay test strip wherein the test strip sample portion is operabiy connected to spaced capture portions of the test strip and whereby the components of the sample flow from the test strip sample portion to 20 and through the test strip capture portions, and wherein one capture portion comprises a binding agent for detecting digA, and wherein a second capture portion comprises a binding agent for detecting mlgA, and wherein at least one of the binding agents specifically detects their target. in one embodiment, the binding agent for detecting dlgA binds specifically with digA. In one embodiment, the binding agent for detecting mlgA binds specifically with mlgA. In 25 one embodiment, the sample contacts the capture portion comprising a binding agent for detecting digA before contacting the capture portion comprising a binding agent for detecting mlgA. In a further embodiment, the capture portion comprises a third capture portion comprising a binding agent for detecting lgA2. In one embodiment, the sample contacts the capture portion comprising a binding agent for detecting digA before contacting the capture 30 portion comprising a binding agent for detecting lgA2 and contacts the capture portion comprising the binding agent for detecting lgA2 before contacting the capture portion comprising the binding agent for detecting mlgA. In one embodiment, the capture portion is a test line (for example, a test line as shown in Figure 2 or Figure 3).

in one embodiment, the kit is for use in performing ail of part of an assay herein disclosed. In one embodiment, the disdosure enabies and provides a point-of-care device capable of performing the methods disclosed and clatmed herein.

EXAMPLES

Example 1 - Materials

Recombinant Protein L

Supplier: ThermoFisher Scientific

Cat#: 21189

Concentration: 25ug/mL

Mouse Anti-human IgA

Supplier: Sigma

- Cat#: 10636

Concentration: 0.5 mg/ml

Mouse anti Human lgA2 (subclass spécifie)

Supplier: Nordic Mubio

Cat#: MAHu/lgA2

Concentration: 0.25mg/mL

CSC (Chimeric Secretory Component, chimeric polymeric Ig receptor)

Supplier: ln-house (Burnet Institute as described in WO/2014/071456), expressed in mammalian cells

Concentration: 1mg/mL

Goat anti Human IgA 40nm Gold Conjugale

Supplier; BBI Solutions

- Cat#: BA.GAHA40

Concentration: OD3

Running Buffer

Plasma: PBS + 0.5% Tween + 0.05% Azide Whole blood: 1% Triton X-100 in PBS

Drying conjugale Buffer (BDS, used for dilution of the gold conjugale for drying)

- 20% Sucrose, 5% Trehalose, 0.25% Tween 20, 0.35% PEG, 1% BSA, 2mM EDTA, 10mM Borate

Patient samples

Samples were obtained from patients in varions cohorts of liver diseases including hepatitis B, hepatitis C, or other causes of liver cirrhosis at The Alfred Hospital or St 5 Vincent's Hospital, Melbourne, as well as healthy volunteers at the Burnet Institute, and patients with HIV infection but no known diagnosis of liver disease at The Alfred Hospital. Ail samples were coflected under appropriate informed consent.

Example 2 - Détection of dlgA, mlgA and lgA2 for gut barrier dysfunction and cirrhosis

Latéral flow test strips were prepared by applying three test lines across a nitrocellulose membrane (NCM) (Vivid 90, Pall Corporation) using an IsoFlowTM dispenser (Imagene Technology), and lamination of the NCM together with a combined sample pad and gold conjugale pad (Glass Fiber 8951, AHLSTROM-Munksjo) and absorbent sink (CF6 absorbent 15 pad, GE Healthcare). The test strip was assembled by laminating the NCM, sample pad, lysis pad, and absorbent sink on an adhesive plastic backing card and cutting into 5mm test strips (BIODOT guillotine). These strips were assembied into a disposable plastic housing (Burnet Institute). Example layout and dimensions of the test trips are shown in Figure 2 and Figure 3.

The first test line contains 1 mg/ml of the recombinant protein, chimeric secretory component (CSC or plgR, comprising domain 1 that binds dlgA and substantially fails to bind IgM in the sample, such as from rabbit, and domain 2-5 from human; see WO/2014/071456; produced by the Burnet institute) and forms a ptgR-dlgA complex on the test strip when reacted with sample plasma, sérum blood or gingivo creviscular fluid.

The second test line contains 0.25 mg/ml of anti-human lgA2 monoclonal antibody (Nordic MUbio, Cat MAHu/lgA2) which forms an anti-lgA2-lgA2 complex on the test strip when reacted with sample plasma, sérum, blood or gingivo creviscular fluid.

The third test line is 0.025 mg/ml recombinant Protein L (ThermoFisher Scientific, Cat 21189) which forms a Protein-L:monomeric IgA complex when reacted with sample plasma, sérum, blood or gingivo creviscular fluid. Notably, Protein L also binds both IgG and IgM antibody isotypes, and so the amount of monomeric IgA bound represents the relative level of IgA compared to other isotypes as well as the absolute amount of monomeric IgA.

To run an assay, 5 microlitres of plasma is added to the sample pad of the test strip, followed by 1 drop (approximately 30 microlitres) of PBS containing 0.5% Tween20 detergent. The same method is expected to work with sérum. Alternatively, 5 microlitres of whole blood can be added, followed by 1 drop of PBS containing 1% Triton X-100 detergent. The sample and buffer are allowed to flow on the strip for 10 minutes.

Subsequently, 4 drops of the same buffer are added to the colloïdal gold pad, which contains OD3 of Goat anti Human IgA 40nm Gold Conjugale (BBI Solutions, UK; Cat BA.GAHA40) in B DS (20% suc rose, 5% trehaiose, 0.25% Tween 20, 1% bovine sérum albumin, 2 mM EDTA, 10 mM Borate pH 8.6). The rehydrated gold and buffer are allowed to flow on the test strip for 20 minutes allowing détection of complexes comprising a human IgA antibody in the first, second and third test lines.

After 20 minutes (30 minutes total assay time), the test strip should show 3 visible lines, representing (in order from the sample well) dimeric IgA, lgA2, and monomeric IgA. If the third line (monomeric IgA) is missing, or if aîl three lines are missing, it indicates either failure of the assay, or that the patient îs IgA déficient and the test cannot be used in these rare individuals (Figure 5A).

The intensity of each of the test lines is proportional to the amount of the respective analyte, and is interpreîed either visuaily, or more preferably using an automated reader such as the Axxin AX-2X reader (Axxin Ltd, Melbourne). Using the AX-2X, a numerical readout for each test line is obtained. The workflow for using the Axxin AX-2X is shown in Figure 4 and an example of the readout is provided in Figure 5A.

The interprétation of the test is achieved by two methods:

1) The relative amount of dlgA and mlgA ie the numerical ratio of the test line intensifies for dlgA/mlgA is calculated, and if this ratio is greater than 0.65 in the examples shown, it indicates a positive test resuit.

2) The absolute amount of lgA2 is observed, and if this value is greater than 3,500 arbitrary units (AX-2X), it indicates a positive test resuit.

The calculation of these cut-off/threshold values are shown in Figure 6.

The overall test resulî is considered positive if either or both of these methods generate a positive test resuit. The test resuit is considered négative if both of these methods generate a négative test resuit. It is possible that other arithmetic formulas couid be applied to the test values to provide additional information, such as the absolute amount of dlgA.

The results of this test in the assessment in healthy subjects, patients with Hepatitis B and patients with cirrhosis is shown in Figures 6, 7, 8 and 17. The test is suitable for identifying patients with low and high severity of cirrhosis levels (Child-Pugh A, Child-Pugh B and ChildPugh C see Figure 9) and patients with cirrhosis caused by different underlying disease States 10 (see Figure 10 and 17). The importance of a test for cirrhosis is further exemplified when testing the cirrhosis patients for Figures 6, 7 and 8 for alanine aminotransferase 1 (BioPoinf ALT1 rapid test). As shown in Figure 11 and as well known in the art, only a small proportion (6.6%) of cirrhotic patients hâve evidence of liver disease when tested using ALT, the most commonly used biomarker for liver disease.

Example 3 - dlgA test for gut barrier dysfunction and cirrhosis

Latéral flow test strips were prepared by applying three test lines across a nitrocellulose membrane (NCM) (Vivid 90, Pall Corporation) using an IsoFlowTM dispenser (Imagene 20 Technology), and lamination of the NCM together with a combined sample pad and gold conjugale pad (Glass Fiber 8951, AHLSTROM-Munksjo) and absorbent sink (CF6 absorbent pad, GE Healthcare). The test strip was assembled by laminating the NCM, sample pad, lysis pad, and absorbent sink on an adhesive plastic backing card and cutting into 5mm test strips (BIODOT guillotine). These strips were assembled into a disposable plastic housing (Burnet 25 Institute). Example layout and dimensions of the test trips are shown in Figure 2 and Figure 3.

The first test line contains 1 mg/ml of the recombinant protein, chimeric secretory component (CSC or plgR, comprising domain 1 that binds dlgA and subsfanfially fails to bind IgM în the sample, such as from rabbit, and domain 2-5 from human; see WO/2014/071456; produced by 30 the Burnet Institute) and forms a plgR-dlgA complex on the test strip when reacted with sample plasma, sérum, blood or gingivo creviscular fluid.

The second test line contains 0.25 mg/ml of anti-human lgA2 monoclonal antibody (Nordic

MUbio, Cat MAHu/lgA2) which forms an anti-îgA2-lgA2 complex on the test strip when reacted 35 with sample plasma, sérum, blood or gingivo creviscular fluid.

The third test line is 0.025 mg/ml recombinant Protein L (ThermoFisher Scientific, Cat no. 21189) which forms a Protein-L:monomeric IgA complex when reacted with sample plasma, sérum, blood or gingivo creviscular fluid. Notably, Protein L also binds both IgG and IgM antibody isotypes, and so the amount of monomeric IgA bound represents the relative level of 5 IgA compared to other isotypes as well as the absolute amount of monomeric IgA.

Plasma (5 microlitres) is added to the sample pad of the test strip, foilowed by 1 drop (approximately 30 microlitres) of PBS containing 0.5% Tween20 detergent. Sérum could be used as an alternative to plasma. Aiternatively, 5 microlitres of whole blood can be added, 10 foilowed by 1 drop of PBS containing 1% Triton X-100 detergent. The sample and buffer are allowed to flow on the strip for 10 minutes.

Subsequently, 4 drops of the same buffer are added to the colloïdal gold pad, which contains OD3 of Goat anti Human IgA 40nm Gold Conjugale (BBI Solutions, UK; Cat no. A.GAHA40) in 15 BDS (20% sucrose, 5% trehalose, 0.25% Tween 20, 1% bovine sérum albumin, 2 mM EDTA, mM Borate pH 8.6). The rehydrated gold and buffer are allowed to flow on the test strip for 20 minutes.

After 20 minutes (30 minutes total assay time), the test strip should show 3 visible lines, 20 representing (in order from the sample well) dimeric IgA, lgA2, and monomeric IgA. If the third line (monomeric IgA) is missing, or if ail three lines are missing, it indicates either failure of the assay, or that the patient is IgA déficient and the test cannot be used in these rare individuels (Figure 5B).

The intensity of each of the test lines is proportional to the amount of the respective analyte, and is interpreted either visually, or more preferably using an automated reader such as the Axxin AX-2X reader (Axxin Ltd, Melbourne). Using the AX-2X, a numerical readout for each test line is obtained. The workflow for using the Axxin AX-2X is shown in Figure 4 and an example of the readout is provided in Figure 5B.

The Interprétation of the test is achieved by two methods:

1) The relative amount of dlgA and mlgA ie the numerical ratio of the test line intensifies for dlgA/migA is calculated, and if this ratio is greater than 0.65 in the exampîes shown, it indicates a positive test resuit.

2) The absolute amount of lgA2 is observed, and if this value is greater than 3,500 arbitrary units (AX-2X), it indicates a positive test resuit,

The calculation of these cut-off/threshold values are shown in Figure 6.

The overall test resuit is considered positive if either or both of these methods generate a positive test resuit. The test resuit is considered négative if both of these methods generate a négative test resuit. It is possible that other arithmetic formulas could be applied to the test values to provide additional information, such as the absolute amount of dlgA.

In the above examples, the dimeric IgA was captured with CSC and detected with colloïdal gold anti-lgA which detects both lgA1 and lgA2 isotypes of IgA. To détermine whether it is possible to detect dlgA1 and dlgA2 separately, similar test strips were constructed with CSC capture as before, but with the use of primary antibodies to lgA1 and lgA2 (Nordic MUbio Cat#: 15 MAHu/lgA1 at 5 pg/ml, and Cat# MAHu/lgA2 at 25 pg/ml, respectively) and colloïdal goldconjugated goat anti-mouse antibodies (BBI, OD3) (this is represented diagrammatically in Figure 13). The reactivîty of the dlgA test lines was measured using the Axxîn AX-2X reader.

The results (Figure 12) show that levels of both dlgA1 and dlgA2 are significantly elevated in 20 cirrhosis patients relative to healthy Controls, suggesting that dlgA1 and/or dtgA2 could be used as alternatives to total dlgA in détermination of gut leakage/cirrhosis using the methods outlined. The very low dlgA2 reactivîty observed in most healthy control subjects versus strong reactivîty in the majority of cirrhotic patients may offer some advantages in development of test types, for example where the détection of any visible test line for dlgA2 (rather than comparison 25 of dlgA and mlgA) may provide an indication of gut leakage/cirrhosis.

In the above examples, monomeric IgA was captured by Protein L, which also captures IgG and IgM which means that there is compétition between the mlgA présent in the sample, and the IgG and IgM also présent in the sample. As such, the level of mlgA detected using Protein 30 L reflects both the absolute concentration of mlgA, and the relative concentration of mlgA and IgG and IgM in the sample. This might be especially relevant in the case of HIV infection and other conditions associated with hypergammaglobulinémie (in the case of HIV infection, resulting from generalised immune activation which in turn is linked to gut leakage). As an alternative, it may be préférable to detect mlgA rndependently of the level of IgG and IgM in 35 such samples.

To examine this, we constructed test strips as before, but with the use of Mouse Anti-human IgA (Sigma, Cat#: 10636; 0.5 mg/ml) compared to Protein L (0.05 mg/mi).

The results (Figure 14) show that for healthy control samples, the use of the alternative anti-lgA capture resulted in similar mlgA signais for the majority of samples (6/8) but with 2/8 samples showing much higher apparent levels of mlgA when captured by anti-lgA rather than protein L, reflecting the lack of compétition for anti-lgA capture in these samples. in contrast, 7/8 HIVinfected patient samples showed much higher apparent levels of mlgA when captured by antilgA rather than protein L, reflecting the lack of compétition for anti-lgA capture in these samples where the higher Ievel of IgG and IgM (due to HIV infection) increased the Ievel of compétition for Protein L.

When used for the cirrhosis patient samples (Figure 15), 17/24 patients had similar apparent levels of migA using either anti-lgA or Protein L as capture reagents for mlgA, while 7/24 samples had much higher levels of mlgA using anti-lgA capture. This demonstrates that antilgA can be used be used as an alternative to Protein L for the capture of mlgA, and by inference other IgA capture reagents may also be used.

When the dlgA/mlgA ratios were compared using the anti-lgA versus Protein L capture reagents (Figure 16; note that in this case for the purpose of comparison we hâve assigned an arbitrary cut-off of 1.0 for the ratio of dlgA/mlgA), it is seen that the assay specificity is improved by the use of anti-lgA capture, with 1/8 healthy Controls and 3/8 HIV patients being négative in the anti-lgA assay but positive in the Protein L assay, while sensitivity is somewhat reduced by the use of anti-lgA capture, with 4/24 cirrhosis patients being négative in the antilgA assay but positive in the Protein L assay. As such, further modification of the assay may be made to balance the specificity and sensitivity requirements, for example by the use of both anti-lgA and Protein L in the same or separate test lines, or the use of alternative reagents for capture of mlgA.

Example 4 - Discussion

The methods presented in Example 2 and Example 3 provide a non-invasive test (requiring only 5 pl of blood), that is highly reproducible, and provides an objective, numerical measure (using the AX-2X instrument or similar) with a positive resuit for cirrhosis being the détection of one or both of the dlgA/mlgA ratio and the lgA2 Ievel being above a cut-off. The cut-off can be determined using healthy Controls, mean plus 1 or 2 standard déviations. In practice, a control sample, one or more standards, or a dose response curve could be provided for comparison.

The methods described herein are suitable for the détection of cirrhosis, both in patients with 5 diagnosed iiver disease who are being monitored for progression (HBV, HCV, non-alcoholic fatty Iiver disease or NAFLD) and in population-wide screening for NAFLD and its more severe form, NASH. In resource-rich settings, this would allow triage of patients for more detailed investigation of cirrhosis (ultrasound, fibroscan and other radiological investigations) prior to therapeutic interventions, but in resource-poor settings, where cirrhosis is difficult to diagnose, 10 it would allow access to antiviral therapy for HBV (where cirrhosis is an indication for priority treatment), and would allow appropriais management of antiviral therapy for HCV (where cirrhotic patients are seen by specialists, whereas non-cirrhotics are seen in general practice).

NAFLD affects around 25% of the global population but is usually not diagnosed until advanced 15 disease (NASH and Grade B cirrhosis). NAFLD is increasing along with other metabolic diseases associated with obesity, and population-based screening will be in high demand within the next few years as treatments become available. The methods described herein could be combined with other tests such as Iiver disease tests to provide a more complété picture of a subjects Iiver health. For example the methods/test could be used in combination with an ALT 20 ALT1 test (e.g. ALT1 test, Nanjing BioPoint) and could enhance the results of this test by picking up even earlier stages of Iiver disease.

It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the spécifie embodiments without departing from the 25 spirit or scope of the invention as broadly described. The present embodiments are, therefore, to be considered in ail respects as illustrative and not restrictive.

This application daims priority from Australien Provisional Application No. 2020900194 entitled “Detecting gut barrier dysfunction and/or cirrhosis” filed on 24 January 2020, the entire contents 30 of which are hereby incorporated by reference.

Ali publications discussed and/or referenced herein are incorporated herein in their entirety.

Any discussion of documents, acts, materials, devices, articles or the like which has been 35 included in the present spécification is soleîy for the purpose of providing a context for the present invention, It is not to be taken as an admission that any or ail of these matters form

part of the prior art base or were common general knowledge in the field relevant to the présent invention as it existed before the priority date of each claim of this application.

Claims (15)

1. A method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA level and mlgA level in a biological sample from the subject and a ratio thereof and comparing the ratio to a threshold.

2. A method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising determining the dlgA1 or dlgA2 level and mlgAI or mlgA2 level in a biological sample from the subject and a ratio thereof and comparing the ratio to a threshold.

3, The method of claim 1 or claim 2, wherein a différence from the threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.

4. The method of any one of daims 1 to 3, wherein an elevated dlgA to mlgA ratio or elevated dlgA1 to mlgAI ratio or elevated dlgA2 to m!gA2 ratio compared to a threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.

5. The method of any one of daims 1 to 4, wherein a decreased mlgA to dlgA ratio or decreased mlgAI to dlgAI ratio or decreased mlgA2 to dlgA2 ratio compared to a threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.

6. The method of any one of daims 1, 3 or 4, wherein a dlgA to mlgA ratio greater than or equal to a threshold of 0.65 indicates gut barrier dysfonction and/or cirrhosis in the subject.

7. The method of any one of daims 1, 3 or 4, wherein a dlgA to mlgA ratio greater than or equal to a threshold of 1 indicates gut barrier dysfunction and/or cirrhosis in a subject with HIV, or wherein a dlgA to mlgA ratio greater than or equal to a threshold of 0.5 indicates gut barrier dysfonction and/or cirrhosis in a subject with hepatitis B.

8. The method of any one of daims 1, 3 or 5, wherein a mlgA to dlgA ratio of less than or equal to a threshold of 1.54 indicates gut barrier dysfonction and/or cirrhosis in the subject

9. The method of any one of daims 1, 3 or 5, wherein a mlgA to dlgA ratio less than or equal to a threshold of 1 indicates gut barrier dysfonction and/or cirrhosis in a subject with HIV, or wherein a dlgA to mlgA ratio equal to or less than a threshold of 2 indicates gut barrier dysfunction and/or cirrhosis in a subjed with hepatitis B.

10. The method of any one of daims 1 or 3 to 9, wherein the dlgA level in the sample is determined by contacting the sample with a pigR, an anti-dlgA antibody or an anti-lgA J chain antibody and forming a détectable dlgA complex.

11. The method of claim 10, wherein the plgR is chimeric secretory component.

12. The method of any one of claims 1 or 3 to 11, wherein the mlgA level in the sample is determined by contacting the sample with an anti-mlgA antibody and forming a détectable mlgA complex.

13. The method of any one of claims 2 to 5, wherein the mlgA1 level in the sample is determined by contacting the sample with an anti-mlgAI antibody and forming a détectable mlgA complex.

14. The method of any one of claims 1 or 3 to 11, wherein the mlgA level is determined in a sample depleted of dlgA, and lgA2 and is determined by contacting the sample with Protein L or an anti-lgA and forming a détectable mlgA complex.

15 The method of any one of claims 2 to 5 or 13, wherein the mlgA1 level is determined in a sample depleted of dlgA, and lgA2 and is determined by contacting the sample with Protein L or an anti-lgA and forming a détectable mlgA complex.

16 The method of any one of claims 1 to 15, further comprising determining the level of lgA2 in the sample, wherein one or both of (i) and (ii) indicates gut barrier dysfunction and/or cirrhosis in the subject:

(i) an elevated dlgA to mlgA ratio compared to a threshold; a decreased mlgA to dlgA ratio compared to a threshold; an elevated dlgAl to mlgAl ratio compared to a threshold; a decreased mlgA1 to dlgAl ratio compared to a threshold; an elevated dlgA2 to m!gA2 ratio compared to a threshold; a decreased mlgA2 to dlgA2 ratio compared to a threshold, and (il) an elevated lgA2 level compared to a threshold.

17. The method of claim 16, wherein the lgA2 level in the sample is determined by contacting the sample with an anti-lgA2 antibody and forming a détectable lgA2 complex.

18. The method of any one of claims 1, or 2 to 17, wherein the method comprises contacting the sample with a plgR, an anti-digA antibody, or anti-lgA J chain antibody and forming a détectable dlgA complex, followed by contacting the sample with Protein L, an anti-lgA antibody or an anti-mlgA antibody and forming a détectable mlgA complex.

19. The method of any one of claims 1, or 2 to 18, wherein the method comprises contacting the sample with a plgR, an anti-dlgA antibody, or anti-lgA J chain antibody and forming a détectable dlgA complex, followed by contacting the sample with an anti-igA2 antibody and forming a détectable lgA2 complex, followed by contacting the sample with Protein L, an anti-lgA antibody or an anti-mlgA antibody and forming a détectable mlgA complex.

20. The method of any one of claims 10 to 19, wherein one or more of the mlgA complex, dlgA complex, and lgA2 complex is detected by a reagent that binds IgA.

21. The method of claim 20, wherein the reagent that binds IgA is selected from one or more of: anti-human IgA colloïdal gold, anti-human IgA1 colloïdal gold and anti-human lgA2 colloïdal gold.

22. The method of any one of claims 10 to 21, wherein the détectable complex comprises one or more of: colloïdal gold, a magnetic agent, coloured latex, carboxycellulose, carbon nanoparticles and a fluorescent label.

23. The method of any one of claims 1 to 22, wherein the blological sample is selected from whole blood, plasma, sérum or gingivo creviscular fluid.

24. The method of any one of claims 1 to 23, wherein the cirrhosis is the resuit of: alcohol, NAFLD (non-alcoholic fatty liver disease), NASH (non-alcoholic steatohepatitis), viral hepatitis, HIV, cryptogenic, primary biliary cirrhosis, and/or primary sclerosing cholangitis.

25. The method of any one of claims 1 to 24, wherein the cirrhosis has a Child-Pugh score of A, a Child-Pugh score of B or a Child-Pugh score of C.

26. The method of any one of claims 1 to 25, wherein the method has a diagnostic sensitivity of at least 80% for cirrhosis.

27. The method of any one of claims 1 to 26, wherein the method has a diagnostic specificity of at least 85% for cirrhosis

28. The method of any one of claims 1 to 27, wherein when the level of igA2 is not determined, the method has one or more of:

i) a diagnostic sensitivity of at least 54% for cirrhosis with a Child-Pugh score of A;

ii) a diagnostic sensitivity of at least 69% for cirrhosis with a Child-Pugh score of B; and iii) a diagnostic sensitivity of at least 87% for cirrhosis with a Child-Pugh score of C.

29. The method of any one of claims 1 to 28, wherein when the level of lgA2 is determined, the method has one or more of:

i) a diagnostic sensitivity of ai least 72% for cirrhosis with a Child-Pugh score of A;

ii) a diagnostic sensitivity of at least 76% for cirrhosis with a Child-Pugh score of B; and iii) a diagnostic sensitivity of at least 88% for cirrhosis with a Child-Pugh score of C.

30. The method of any one of daims 1 to 29, wherein for cirrhosis with a Child-Pugh score of A the method has one or more of:

i) a diagnostic sensitivity of at least 90% for alcoholic cirrhosis;

ii) a diagnostic sensitivity of at least 70% for cryptogenic cirrhosis;

iii) a diagnostic sensitivity of at least 40% for hepatitis B cirrhosis;

iv) a diagnostic sensitivity of at least 76% for hepatitis C cirrhosis;

v) a diagnostic sensitivity of at least 90% for NASH cirrhosis;

vi) a diagnostic sensitivity of at least 90% for PBC; and vii) a diagnostic sensitivity of at least 90% for PSC.

31. The method of any one of daims 1 to 30, wherein the method is suitable for use in a point-ofcare (POC) device.

32. The method of any one of daims 1 to 31, wherein the method comprises: a chromatographie assay, enzyme-linked immunosorbent assay, fluorescent immunosorbent assay, radiological immunosorbent assay or a homogeneous assay.

33. The method of any one of daims 1 to 32, wherein the method comprises a latéral flow format.

34. The method of any one of daims 1 to 33, performed on a latéral flow device comprising a test strip comprising at least one sample loading région, wherein:

a) the strip comprises a capture portion comprising an agent which binds dlgA, and

b) the strip comprises a capture portion comprising an agent which binds mlgA, wherein a) is doser to the sample loading région than b) such that the sample contacts a) before b).

35. The method of daim 34, which further comprises, between a) and b), is c) a third section of the substrate comprising an agent which binds lgA2

36. The method of claim 34 or daim 35 which comprises flowing the sample through the device and simultaneously or subsequently flowing a détection reagent which binds IgA through the device, and detecting the détection reagent bound to IgA.

37. The method of daim 36, wherein the détection reagent is selected from one or more of: antihuman IgA colloïdal gold, anti-human lgA1 colloïdal gold and anti-human lgA2 colloïdal gold.

38.

The method of any one of daims 1 to 37, wherein the subject is a mammal.

39. The method of claim 38, wherein the mammal is a human.

40. The method of any one of daims 1 to 39, wherein the subject has a normal level of alanine aminotransferase 1 (ALT-1 ) and/or alanine aminotransferase.

41. The method of any one of daims 1 to 40, wherein the method is used to monitor the progression of cirrhosis in the subject.

42. A method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising detemnining the level of lgA2 in a biological sample from the subject, wherein an elevated level of lgA2 compared to a threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.

43. A method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method comprising detemnining the level of dlgA2 in a biological sample from the subject, wherein a level of dlgA2 that differs from a threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.

44. A kit for detecting gut barrier dysfunction and/or cirrhosis in a subject comprising;

(i ) an agent which binds dlgA and forms a détectable dlgA complex, (i i) an agent which binds mlgA and forms a détectable mlgA complex, wherein (i) binds specifically with dlgA and/or (il) binds specifically with mlgA, wherein the kit further comprises one or both of:

a) an agent which binds and forms a détectable lgA2 complex; and

b) a reagent which detects one or more of the mlgA complex, dlgA complex, and lgA2 complex.

45. The kit of claim 44, wherein the reagent is anti-human IgA colloïdal gold.

46. The kit of any one of clams 44 or claim 45, wherein one or more of the agents is bound to a solid support.

47. The kit of any one of daims 44 to 46, wherein the kit comprises a strip, chip or cartridge for use in a latéral flow assay.

48. The kit of any one of daims 44 to 47, wherein the kit comprises a strip, chip or cartridge for use on point-of care device.

49. A test strip for a latéral flow device comprisîng at least one sample loading région, wherein

a) the strip comprises a capture portion comprisîng an agent which binds dlgA, and

b) the strip comprises a capture portion comprisîng an agent which binds mlgA, wherein a) is oloser to the sample loading région than b) such that the sample contacts a) before b).

50. The test strip of claim 49, wherein the strip further comprisîng, between a) and b), is c) a capture portion comprisîng an agent which binds lgA2.

51. A method for detecting gut barrier dysfunction and/or cirrhosis in a subject, the method 10 comprisîng determining the dlgA level and mlgA level in a biological sample from the subject wherein when the mlgA level is elevated relative to a threshold, then the dlgA level is compared to a dlgA threshold wherein a différence from the dlgA threshold indicates gut barrier dysfunction and/or cirrhosis in the subject, and wherein when the mlgA level is decreased relative to a threshold, the ratio of the dlgA level

15 and mlgA level is determined and compared to a ratio threshold, wherein a différence from the ratio threshold indicates gut barrier dysfunction and/or cirrhosis in the subject.