EP1766043A4 - Computer systems and methods for constructing biological classifiers and uses thereof - Google Patents

Computer systems and methods for constructing biological classifiers and uses thereof

Info

Publication number
EP1766043A4
EP1766043A4 EP05766673A EP05766673A EP1766043A4 EP 1766043 A4 EP1766043 A4 EP 1766043A4 EP 05766673 A EP05766673 A EP 05766673A EP 05766673 A EP05766673 A EP 05766673A EP 1766043 A4 EP1766043 A4 EP 1766043A4
Authority
EP
European Patent Office
Prior art keywords
methods
computer systems
classifiers
constructing biological
constructing
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP05766673A
Other languages
German (de)
French (fr)
Other versions
EP1766043A2 (en
Inventor
Choong-Chin Liew
Adam Dempsey
Tom Yager
Samuel Chao
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
StageZero Life Sciences Ltd
Original Assignee
Genenews Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genenews Ltd filed Critical Genenews Ltd
Publication of EP1766043A2 publication Critical patent/EP1766043A2/en
Publication of EP1766043A4 publication Critical patent/EP1766043A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/21—Design or setup of recognition systems or techniques; Extraction of features in feature space; Blind source separation
    • G06F18/211—Selection of the most significant subset of features
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Evolutionary Computation (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Chemical & Material Sciences (AREA)
  • Public Health (AREA)
  • Bioethics (AREA)
  • Genetics & Genomics (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Software Systems (AREA)
  • Signal Processing (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP05766673A 2004-06-19 2005-06-20 Computer systems and methods for constructing biological classifiers and uses thereof Withdrawn EP1766043A4 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US58131204P 2004-06-19 2004-06-19
US58197704P 2004-06-21 2004-06-21
US64347505P 2005-01-12 2005-01-12
US66372205P 2005-03-22 2005-03-22
PCT/US2005/022071 WO2006002240A2 (en) 2004-06-19 2005-06-20 Computer systems and methods for constructing biological classifiers and uses thereof

Publications (2)

Publication Number Publication Date
EP1766043A2 EP1766043A2 (en) 2007-03-28
EP1766043A4 true EP1766043A4 (en) 2012-05-30

Family

ID=35782316

Family Applications (1)

Application Number Title Priority Date Filing Date
EP05766673A Withdrawn EP1766043A4 (en) 2004-06-19 2005-06-20 Computer systems and methods for constructing biological classifiers and uses thereof

Country Status (3)

Country Link
EP (1) EP1766043A4 (en)
CA (1) CA2571180A1 (en)
WO (1) WO2006002240A2 (en)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050221383A1 (en) 2003-08-08 2005-10-06 Choong-Chin Liew Osteoarthritis biomarkers and uses thereof
US20080085524A1 (en) * 2006-08-15 2008-04-10 Prometheus Laboratories Inc. Methods for diagnosing irritable bowel syndrome
US20100094560A1 (en) * 2006-08-15 2010-04-15 Prometheus Laboratories Inc. Methods for diagnosing irritable bowel syndrome
US8630808B2 (en) 2007-10-16 2014-01-14 Koninklijke Philips N.V. Estimation of diagnostic markers
WO2009111891A1 (en) * 2008-03-12 2009-09-17 Mcmaster University Diagnostic method for peanut allergy
CA2776228A1 (en) 2009-10-01 2011-04-07 Chipdx Llc System and method for classification of patients
US20200026822A1 (en) * 2018-07-22 2020-01-23 LifeNome Inc. System and method for polygenic phenotypic trait predisposition assessment using a combination of dynamic network analysis and machine learning
CN111223520B (en) * 2019-11-20 2023-09-12 云南省烟草农业科学研究院 Whole genome selection model for predicting nicotine content in tobacco and application thereof
CN112232387B (en) * 2020-09-29 2024-02-06 南京财经大学 Effective characteristic identification method for disease symptoms of grain crops based on LSELM-RFE
CN113096734B (en) * 2021-05-11 2021-12-14 中国科学院水生生物研究所 Method for screening molecular marker combination for diploid population paternity test

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030104499A1 (en) * 2001-03-12 2003-06-05 Monogen, Inc. Cell-based detection and differentiation of lung cancer

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7324926B2 (en) * 1999-04-09 2008-01-29 Whitehead Institute For Biomedical Research Methods for predicting chemosensitivity or chemoresistance
CA2505416A1 (en) * 2002-11-21 2004-06-10 Wyeth Methods for diagnosing rcc and other solid tumors

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030104499A1 (en) * 2001-03-12 2003-06-05 Monogen, Inc. Cell-based detection and differentiation of lung cancer

Also Published As

Publication number Publication date
WO2006002240A3 (en) 2006-06-15
CA2571180A1 (en) 2006-01-05
WO2006002240A2 (en) 2006-01-05
WO2006002240A8 (en) 2006-10-26
EP1766043A2 (en) 2007-03-28

Similar Documents

Publication Publication Date Title
EP1766043A4 (en) Computer systems and methods for constructing biological classifiers and uses thereof
EP1934831A4 (en) System and method for response clustering
GB2414833B (en) Methods and systems for data integration
GB2440697B (en) Computer security system and method
GB2442922B (en) Systems and methods for haptic sound
EP1996931A4 (en) Blood cell sorting methods and systems
IL184308A0 (en) Systems and methods for providing
EP1982540A4 (en) Content-based policy compliance systems and methods
EP1851630A4 (en) Systems and methods for restoring data
EP1964050A4 (en) Healthcare management systems and associated methods
GB0810333D0 (en) Information exploration systems and methods
IL192117A0 (en) Systems and methods for processing data flows
EP1977359A4 (en) Methods and systems for conducting research operations
EP1661047A4 (en) Systems and methods for automated computer support
HK1097631A1 (en) Information processing system and information processing device
GB0515362D0 (en) Document creation system and related methods
GB0515360D0 (en) Document creation system and related methods
GB0515354D0 (en) Document creation system and related methods
EP1812850A4 (en) Efficient multiprocessor system and methods thereof
GB0515355D0 (en) Document creation system and related methods
GB0419456D0 (en) Document creation system and related methods
GB2443360B (en) Distributed database systems and methods
EP1827646A4 (en) Contacting systems and methods and uses thereof
GB0514340D0 (en) Data collation system and method
EP1816565A4 (en) Computer system and information processing method

Legal Events

Date Code Title Description
PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

Free format text: ORIGINAL CODE: 0009012

17P Request for examination filed

Effective date: 20070115

AK Designated contracting states

Kind code of ref document: A2

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU MC NL PL PT RO SE SI SK TR

AX Request for extension of the european patent

Extension state: AL BA HR LV MK YU

REG Reference to a national code

Ref country code: HK

Ref legal event code: DE

Ref document number: 1103108

Country of ref document: HK

RAP1 Party data changed (applicant data changed or rights of an application transferred)

Owner name: GENENEWS CORPORATION

RAP1 Party data changed (applicant data changed or rights of an application transferred)

Owner name: GENENEWS CORPORATION

RIC1 Information provided on ipc code assigned before grant

Ipc: G06K 9/62 20060101ALI20120420BHEP

Ipc: G01N 33/48 20060101ALI20120420BHEP

Ipc: C12Q 1/00 20060101ALI20120420BHEP

Ipc: G06F 19/00 20110101AFI20120420BHEP

A4 Supplementary search report drawn up and despatched

Effective date: 20120425

17Q First examination report despatched

Effective date: 20120906

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN

18D Application deemed to be withdrawn

Effective date: 20150106