CN116895337A - Synthetic biological element database system - Google Patents
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- 230000000875 corresponding effect Effects 0.000 claims 10
- 230000002596 correlated effect Effects 0.000 claims 1
- 238000000034 method Methods 0.000 abstract description 11
- 238000013461 design Methods 0.000 abstract description 9
- 238000011161 development Methods 0.000 abstract description 6
- 230000015572 biosynthetic process Effects 0.000 abstract description 2
- 230000004424 eye movement Effects 0.000 abstract description 2
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
- G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
- G06F3/011—Arrangements for interaction with the human body, e.g. for user immersion in virtual reality
- G06F3/013—Eye tracking input arrangements
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
Abstract
The application relates to the technical field of synthetic biological element databases, in particular to a synthetic biological element database system which comprises an element database, a processing end, a client and an eye movement tracking module. The client is used for sending a search request to the processing end, and the processing end is used for searching the matched biological elements in the element database according to the search request to form a search result and sending the search result to the client. The eye tracking module is arranged at the client and used for capturing the gazing area of the user when the user refers to the search result. The client is further configured to determine an ignored content according to the real-time display content and the gaze area, compare the ignored content with the search request, and insert the ignored content into the content that is not displayed yet if the matching degree of the ignored content and the search request is greater than or equal to the critical threshold. The method can effectively reduce the misreading rate of a user, avoid the omission of key information and promote the efficient development of the synthesis design of the biological system.
Description
Technical Field
The application relates to the technical field of synthetic biological element databases, in particular to a synthetic biological element database system.
Background
Synthetic biology is a discipline for solving the problems of energy, materials, health, environmental protection, etc. by artificially designing and constructing biological systems which do not exist in nature. The biological element (park) is the most basic unit for designing a synthetic biological system.
In the actual working process, the retrieval and management of the technical information of the biological element can consume a great deal of time, and the reading of the technical information can consume a great deal of effort of staff. Along with the increase of reading quantity, the fatigue degree is increased in a straight line, and the misreading rate is obviously increased, which is not beneficial to the efficient development of the synthesis design of the biological system.
In view of this, the present application has been made.
Disclosure of Invention
The application aims to provide a synthetic biological element database system which can effectively reduce the misreading rate of a user, avoid the omission of key information and promote the efficient development of the synthetic design of a biological system.
Embodiments of the present application are implemented as follows:
a synthetic biological element database system, comprising: the eye tracking system comprises an element database, a processing end, a client and an eye tracking module.
The element database is used for storing biological elements, and each biological element is matched with an introduction document which is used for recording technical information of the corresponding biological element.
The client is used for sending a search request to the processing end, and the processing end is used for searching the matched biological elements in the element database according to the search request to form a search result and sending the search result to the client. The client is also used for displaying the search result to the user.
The eye tracking module is arranged at the client and used for capturing the gazing area of the user when the user refers to the search result.
The client is further configured to determine an ignored content according to the real-time display content and the gaze area, compare the ignored content with the search request, and insert the ignored content into the content that is not displayed yet if the matching degree of the ignored content and the search request is greater than or equal to the critical threshold.
Further, in the search results, the biological elements are ranked from high to low according to the relevance, and the relevance value is marked.
When comparing the ignored content with the search request, the client directly compares the correlation value of the ignored content with a critical threshold value, and if the correlation value of the ignored content is greater than or equal to the critical threshold value, the ignored content is inserted into the content which is not displayed yet.
Further, when it is detected that the correlation value of the ignored content is smaller than the critical threshold, the biological element located after the ignored content in the search result is not inserted into the content which is not displayed.
Further, after the ignored content is inserted into the content which is not displayed yet and is displayed again, if the ignored content is ignored again, searching the content with the highest matching degree with the search request in the introduction document of the ignored content and performing screenshot, highlighting the screenshot and reinserting the ignored content into the content which is not displayed yet.
Further, in the search result, the title and brief introduction of the biological element are displayed, and the introduction document is displayed after clicking the title.
The processing end is also used for processing the search result, and comprises the following steps:
content matching the search request is determined in the introductory document for each bio-element.
And constructing a grid diagram according to the display typesetting of the introduction document, wherein each grid block corresponds to one character, and the distribution of the grid blocks is matched with the display typesetting.
In the grid map, a grid block corresponding to the content matching the search request is highlighted to form a related content distribution map.
In the search result, the relevant content distribution map is displayed beside the title of the corresponding biological element.
Further, the related content distribution map is a vector map.
Further, the client is also used for providing a selection tool for the user. The selection tool is used for selecting grid blocks in the related content distribution diagram, continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document.
After the user finishes selecting, the client extracts the content corresponding to the selected grid block from the introduction document and displays the content to the user.
Further, the client is further configured to set a threshold of the number of characters. In the search result, if the number of characters of the introduction document is greater than or equal to the threshold number of characters, performing thumbnail processing on the related content distribution diagram, including:
and clustering the highlighted grid blocks according to a preset clustering rule to obtain a concentrated area.
Filling all grid blocks belonging to the same concentrated area with the same color, and distinguishing different concentrated areas with different colors to form a plurality of area color blocks.
And deleting the grid blocks between the adjacent regional color blocks, so that all the regional color blocks are mutually closed, and the direction relationship between the regional color blocks after the closing is matched with the phase before the closing so as to obtain the related content thumbnail.
In the search result, the relevant content thumbnail is displayed beside the title of the corresponding bio-element.
Further, in the related content thumbnail, a dividing line is marked between adjacent region color blocks.
And when clicking the regional color block, displaying the related content thumbnail corresponding to the regional color block. And when clicking the dividing line, displaying the content of the introduction document corresponding to the area between the two area color blocks corresponding to the dividing line.
Furthermore, the selection tool is also used for selecting the grid blocks in the related content thumbnails corresponding to the regional color blocks, continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document.
After the user finishes selecting, the client extracts the content corresponding to the selected grid block from the introduction document and displays the content to the user.
The technical scheme of the embodiment of the application has the beneficial effects that:
the synthetic biological element database system provided by the embodiment of the application effectively avoids that a user leaks some contents because of carelessness in the process of reading the search result, and meanwhile, the normal reading sequence and reading habit of the user are not disturbed, so that the missed contents can be read in a targeted manner.
In general, the synthetic biological element database system provided by the embodiment of the application can effectively reduce the misreading rate of a user, avoid the omission of key information and promote the efficient development of the synthetic design of a biological system.
Drawings
In order to more clearly illustrate the technical solutions of the embodiments of the present application, the drawings that are needed in the embodiments will be briefly described below, it being understood that the following drawings only illustrate some embodiments of the present application and therefore should not be considered as limiting the scope, and other related drawings may be obtained according to these drawings without inventive effort for a person skilled in the art.
FIG. 1 is a schematic diagram of a synthetic biological element database system according to an embodiment of the present application;
FIG. 2 is an exemplary diagram illustrating the arrangement of characters in a document;
FIG. 3 is a grid diagram corresponding to the character arrangement of FIG. 2;
FIG. 4 is a graph of related content distribution corresponding to FIG. 2;
FIG. 5 is an example of the distribution of matching content in a long-presented document;
FIG. 6 is a schematic diagram of a centralized area obtained after clustering analysis of matching content;
FIG. 7 is a schematic illustration of a region patch based on the result of FIG. 6;
FIG. 8 is a related content thumbnail based on FIG. 6;
FIG. 9 is a schematic diagram of the correspondence between each region color patch and each portion of an introduction document.
Reference numerals illustrate:
a synthetic biological element database system 1000; a component database 100; a processing end 200; a client 300; eye movement tracking module 400.
Detailed Description
For the purpose of making the objects, technical solutions and advantages of the embodiments of the present application more apparent, the technical solutions of the embodiments of the present application will be clearly and completely described below with reference to the accompanying drawings in the embodiments of the present application, and it is apparent that the described embodiments are some embodiments of the present application, but not all embodiments of the present application. The components of the embodiments of the present application generally described and illustrated in the figures herein may be arranged and designed in a wide variety of different configurations.
Thus, the following detailed description of the embodiments of the application, as presented in the figures, is not intended to limit the scope of the application, as claimed, but is merely representative of selected embodiments of the application. All other embodiments, which can be made by those skilled in the art based on the embodiments of the application without making any inventive effort, are intended to be within the scope of the application.
It should be noted that: like reference numerals and letters denote like items in the following figures, and thus once an item is defined in one figure, no further definition or explanation thereof is necessary in the following figures.
As used in this specification and the claims, the terms "a," "an," "the," and the like are not specific to the singular, but may include the plural, unless the context clearly dictates otherwise. In general, the terms "comprises" and "comprising" merely indicate that the steps and elements are explicitly identified, and they do not constitute an exclusive list, as other steps or elements may be included in a method or apparatus.
The flowcharts used in this specification are used to describe the operations performed by the system according to embodiments of the specification. It will be appreciated that the operations of the steps are not necessarily performed in a sequential order. Rather, the steps may be processed in reverse order or simultaneously. Also, other operations may be added to or removed from these processes.
Referring to fig. 1, the present embodiment provides a system 1000 for a synthetic bio-element database 100 for assisting researchers to quickly search for desired bio-element information.
The synthetic biological element database 100 system 1000 includes: component database 100, processing side 200, client 300, and eye tracking module 400.
The component database 100 is used to store information of biological components, each biological component is matched with an introduction document, and the introduction document is used to record technical information of the corresponding biological component, and the technical information includes, but is not limited to: physicochemical properties, applications, related studies, and the like.
The client 300 is configured to send a search request to the processing end 200, and the processing end 200 is configured to search the component database 100 for a matching biological component according to the search request to form a search result and send the search result to the client 300. The client 300 is further configured to present the search result to a user.
The eye tracking module 400 is disposed at the client 300, and the eye tracking module 400 is used for capturing a gaze area on a screen when a user refers to a search result.
The client 300 is further configured to determine the ignored content according to the real-time display content and the gaze area of the search result. The display content on the screen and the gazing area of the user are confirmed in real time, the content entering the gazing area is considered to be focused by the user, and the content entering the real-time gazing area from beginning to end is considered to be not focused by the user, namely the ignored content.
And comparing the ignored content with the search request, and if the matching degree of the ignored content and the search request is greater than or equal to a critical threshold value, inserting the ignored content into the content which is not displayed yet. With sequential display within the retrieved content, the ignored content, which was previously inserted into the content that has not been displayed, can be displayed again on the screen for additional review by the user.
Therefore, the situation that the user leaks some contents because of personal negligence in the process of reading the search result is effectively avoided, the normal reading sequence and reading habit of the user are not disturbed, and the missed contents can be read in a targeted manner.
The critical threshold value can be flexibly set according to actual requirements.
In general, the system 1000 of the synthetic bio-element database 100 can effectively reduce the misreading rate of users, avoid the omission of key information, and promote the efficient development of the synthetic design of the biological system.
In this embodiment, in the search result, the biological elements are ranked from high to low in correlation, and the correlation value is noted.
When comparing the ignored content with the search request, the client 300 directly compares the correlation value of the ignored content with a critical threshold, and if the correlation value of the ignored content is greater than or equal to the critical threshold, inserts the ignored content into the content which is not displayed yet.
Accordingly, when it is detected that the correlation value of the ignored content is smaller than the critical threshold, the biological element located after the ignored content in the search result is not inserted into the content which is not displayed. In this way, once the relevance value of a certain ignored content is detected to be smaller than the critical threshold value, the biological elements positioned behind the ignored content in the search result are unified and are not displayed again, and the background load of the system is effectively reduced.
Optionally, after the ignored content is inserted into the content which is not displayed yet and is displayed again, if the ignored content is ignored again, searching the content with the highest matching degree with the search request in the introduction document of the ignored content and performing screenshot, highlighting the screenshot and reinserting the ignored content into the content which is not displayed yet. By the design, information omission caused by the fact that a user does not capture key information in the first time can be further avoided. As a complement to the data acquisition, the reading burden of the user can be reduced.
Further, in the search result, the title and brief introduction of the biological element are displayed, and the introduction document is displayed after clicking the title.
The processing end 200 is further configured to process the search result, including:
content matching the search request is determined in the introductory document for each bio-element. As shown in FIG. 2, each square in FIG. 2 represents a character in the introductory document, and the contents outlined by the dotted line are the determined contents that match the retrieval request.
And constructing a grid diagram according to the display typesetting of the introduction document, wherein each grid block corresponds to one character, and the distribution of the grid blocks is matched with the display typesetting. As shown in fig. 3, fig. 3 is a grid diagram adapted to the document in fig. 2, each grid corresponding to one character in fig. 2, the grid being arranged in the same manner as the characters in the introduction document.
In the grid map, the grid blocks corresponding to the content matching the retrieval request are highlighted, as solid dots in fig. 4, to form a relevant content distribution map.
In the search result, the relevant content distribution map is displayed beside the title of the corresponding biological element.
In this way, the user can quickly understand the relative content and distribution in the introduction document of the biological element through the relative content distribution diagram beside the title, so as to improve the searching and information collecting efficiency. Taking fig. 4 as an example, the distribution of the solid points in the graph corresponds to the distribution of the matching content in the introduction document, and the guidance can be provided when the user reads the introduction document to quickly determine the key content.
Specifically, the relevant content distribution map is a vector map. In this way, the definition of the related content distribution diagram can be ensured for the introduction documents with different spaces.
On this basis, the client 300 is also used to provide a user with a selection tool in order to further improve reading efficiency.
The selection tool is used for selecting grid blocks in the related content distribution diagram, continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document. For example: the document is typeset from left to right and from top to bottom, so that grid blocks are continuously selected from left to right and from top to bottom, two grid blocks which are not adjacent left and right cannot be continuously selected (the last grid block of the upper row and the first grid block of the lower row can be continuously selected), and interlaced continuous selection cannot be performed.
After the user finishes selecting, the client 300 extracts the content corresponding to the selected grid block in the introduction document and displays the extracted content to the user. Alternatively, for this portion of content, it may be displayed through a floating window.
In this way, the user can conveniently and quickly browse and check the search result to determine whether the search result is the required data, so that the search efficiency is greatly improved, the guiding effect in the search process is enhanced, and the user is helped to quickly locate the key content.
Further, the client 300 is further configured to set a threshold of the number of characters. The symbol threshold value can be flexibly set according to actual conditions.
In the search result, if the number of characters of the introduction document is greater than or equal to the threshold value of the number of characters, the introduction document is excessively long, if the related content distribution diagram is still adopted for display, if the definition of the graph is to be maintained and the user is convenient to select the grid block, the size of the graph is larger, and the positive production display is affected. If the display is performed according to the uniform size, the grid blocks in the image are too small to be accurately selected and identified.
For this case, the relevant content distribution map is subjected to a thumbnail process, which includes:
clustering the highlighted grid blocks according to a preset clustering rule to obtain a concentrated area; as shown in fig. 5, the solid dots are highlighted grid blocks, and after clustering, five concentrated areas are obtained, as shown in fig. 6.
Filling all grid blocks belonging to the same concentrated area with the same color, and distinguishing different concentrated areas with different colors to form a plurality of area color blocks; as shown in fig. 7, the five concentrated areas correspond to a region patch a, a region patch B, a region patch C, a region patch D, and a region patch E, respectively.
And deleting the grid blocks between the adjacent regional color blocks, so that all the regional color blocks are mutually closed, and the direction relationship between the regional color blocks after the closing is matched with the direction relationship before the closing to obtain the related content thumbnail, as shown in fig. 8.
It should be noted that the direction relationship only keeps the relative direction matching, without emphasizing the mutual distance; and the relative direction may retain only one of the left-right relationship and the up-down relationship. As shown in fig. 8, only the left-right positional relationship is maintained between the region patch C and the region patch D.
In the search result, the relevant content thumbnail is displayed beside the title of the corresponding bio-element.
Through the design, the content distribution situation matched with the retrieval requirement in the content of the introduction document with long space can be smoothly displayed, the display of the result cannot be influenced due to overlong introduction document space, and meanwhile, the distribution relation of related content is reserved.
Specifically, in the related content thumbnail, a boundary line is marked between adjacent region color blocks.
When the region color block is clicked, the related content thumbnail corresponding to the region color block is displayed, as shown in fig. 9. That is, clicking on a region color block displays the related content thumbnail of the corresponding content in the whole introduction document, which can be regarded as making different parts of the introduction document with long length into a single related content thumbnail.
And when clicking the dividing line, displaying the introduction document content corresponding to the area between the two area color blocks corresponding to the dividing line.
Correspondingly, the selection tool is also used for selecting the grid blocks in the related content thumbnails corresponding to the regional color blocks, continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document.
After the user finishes selecting, the client 300 extracts the content corresponding to the selected grid block in the introduction document and displays the extracted content to the user.
Through the design, the key information in the long introduction document is rapidly positioned and rapidly read. The method is particularly suitable for searching and positioning introduction documents with long space and relatively scattered matching contents.
Through the adoption of the measures, the retrieval efficiency of the biological element is effectively improved, and the reading burden in the technical information collection process is reduced.
In summary, the system 1000 of the synthetic bio-element database 100 provided by the embodiment of the application can effectively reduce the misreading rate of the user, avoid the omission of key information, and promote the efficient development of the synthetic design of the biological system.
The above description is only of the preferred embodiments of the present application and is not intended to limit the present application, but various modifications and variations can be made to the present application by those skilled in the art. Any modification, equivalent replacement, improvement, etc. made within the spirit and principle of the present application should be included in the protection scope of the present application.
Claims (10)
1. A synthetic biological element database system, comprising: the system comprises an element database, a processing end, a client and an eye tracking module;
the element database is used for storing biological elements, each biological element is matched with an introduction document, and the introduction documents are used for recording technical information of the corresponding biological element;
the client is used for sending a search request to the processing end, and the processing end is used for searching the matched biological element in the element database according to the search request to form a search result and sending the search result to the client; the client is also used for displaying the search result to a user;
the eye tracking module is arranged at the client and used for capturing a gazing area when a user refers to the search result;
the client is further configured to determine an ignored content according to the real-time display content and the gaze area, compare the ignored content with the search request, and insert the ignored content into a content that is not displayed yet if the matching degree of the ignored content and the search request is greater than or equal to a critical threshold.
2. The synthetic biological element database system of claim 1 wherein the biological elements are ranked from high to low in relevance among the search results and are labeled with relevance values;
and when comparing the ignored content with the search request, the client directly compares the correlation value of the ignored content with the critical threshold value, and if the correlation value of the ignored content is greater than or equal to the critical threshold value, the ignored content is inserted into the content which is not displayed yet.
3. The synthetic bio-element database system according to claim 2, wherein when it is detected that the correlation value of the ignored content is less than the critical threshold value, for a bio-element located after the ignored content in the search result, it is not inserted into the content which is not yet displayed.
4. The synthetic bio-element database system according to claim 2, wherein after the ignored content is inserted into the content which is not yet displayed and is displayed again, if the ignored content is ignored again, searching the content with the highest matching degree with the search request in the introduction document of the ignored content and performing screenshot, highlighting the screenshot and reinserting the ignored content into the content which is not yet displayed.
5. The synthetic bio-element database system according to claim 1, wherein in the search result, titles and profiles of bio-elements are displayed, and the introduction document is displayed after clicking on the title;
the processing end is also used for processing the search result, and comprises the following steps:
determining content matching the search request in the introduction document of each biological element;
constructing a grid diagram according to the display typesetting of the introduction document, wherein each grid block corresponds to a character, and the distribution of the grid blocks is matched with the display typesetting;
highlighting a grid block corresponding to the content matched with the search request in the grid graph to form a related content distribution diagram;
and displaying the related content distribution map beside the title of the corresponding biological element in the search result.
6. The synthetic biological element database system of claim 5 wherein the correlated content distribution map is a vector map.
7. The synthetic biological element database system of claim 5 wherein the client is further configured to provide a selection tool to a user; the selection tool is used for selecting grid blocks in the related content distribution diagram, continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document;
after the user finishes selecting, the client extracts the content corresponding to the selected grid block in the introduction document and displays the content to the user.
8. The synthetic biological element database system of claim 7 wherein the client is further configured to set a character number threshold; in the search result, if the number of characters of the introduction document is greater than or equal to the threshold value of the number of characters, performing thumbnail processing on the related content distribution map, including:
clustering the highlighted grid blocks according to a preset clustering rule to obtain a concentrated area;
filling all grid blocks belonging to the same concentrated area with the same color, and distinguishing different concentrated areas with different colors to form a plurality of area color blocks;
deleting grid blocks between adjacent regional color blocks, so that all regional color blocks are mutually closed, and the direction relationship between the regional color blocks after the closing is matched with the state before the closing to obtain a related content thumbnail;
and displaying the related content thumbnail beside the title of the corresponding biological element in the search result.
9. The synthetic bioelement database system according to claim 8, characterized in that in the related content thumbnail, a dividing line is marked between adjacent region color blocks;
when clicking the regional color block, displaying the related content thumbnail corresponding to the regional color block; and when clicking the dividing line, displaying the content of the introduction document corresponding to the area between the two area color blocks corresponding to the dividing line.
10. The synthetic bioelement database system according to claim 9, wherein the selection tool is further used for selecting grid blocks in the related content thumbnail corresponding to the regional color blocks, and continuous selection is supported among the grid blocks, and the direction of continuous selection is the same as the typesetting sequence of characters in the introduction document;
after the user finishes selecting, the client extracts the content corresponding to the selected grid block in the introduction document and displays the content to the user.
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