CN103366379A - Level set medical image segmentation method based on heredity kernel fuzzy clustering - Google Patents
Level set medical image segmentation method based on heredity kernel fuzzy clustering Download PDFInfo
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Abstract
The invention provides a level set medical image segmentation method based on heredity kernel fuzzy clustering and relates to the application of medical image segmentation. According to the level set medical image segmentation method disclosed by the invention, a heredity kernel fuzzy clustering algorithm is utilized to obtain an optimal clustering result of a medical image to be treated and then the clustering result is applied to an initial outline of an LBF (Local Binary Fitting) model to carry out the segmentation on the image, so that a blood vessel image has high segmentation efficiency and accuracy.
Description
Technical field
The invention belongs to image processing field, relate to the application of medical image segmentation.Be specifically related to genetic algorithm (GA), Fuzzy c-means clustering algorithm (KFCM) and Level Set Method are in the application in image segmentation field.
Background technology
Medical image segmentation is subject to the attention of international academic community as an important component part in the image segmentation field always, and a large amount of scholars obtain remarkable achievement in this field.But for same clinical image, because different application purposes, interested tissue will be different.So how selecting according to demand suitable partitioning algorithm is a so far insoluble difficult problem of medical image segmentation field.Such as, the MR image for same width of cloth brain can be divided into according to different demands: the extraction of the extraction of brain tissue, the classification of brain tissue, privileged site brain tissue structure etc., the dividing method between this three differs greatly.Therefore, also there is not so far a kind of unified dividing method effectively to cut apart dissimilar medical images.
Nearly decades, Level Set Method has obtained considerable house show in the image segmentation field, and the method was proposed by Osher and Sethian at first in 1988.The method is converted in the high one-dimensional space the implicit mode of level set function curve evolvement with the closed curve evolution problem and finds the solution, it can process the problem that image topology changes preferably, thereby so that the topological structure of segmentation result and initial curve is irrelevant, thereby be widely used in the image segmentation field.
At present, using more widely based on the image Segmentation Technology of level set, model has: peripheral type parted pattern, regional parted pattern, shape prior type parted pattern and mixed type parted pattern.The peripheral type parted pattern mainly utilizes the gradient information of image to stop curve evolvement, namely promotes the evolution curve by local edge information and approaches objective contour.Because the peripheral type model has only utilized the marginal information of image, area information for image is not then used, so it is not good for this model segmentation effect of the weak-edge image that does not have obvious graded, in order to address this problem, the domain type parted pattern is suggested, this model utilizes the area information of image to promote the evolution curve and approaches to objective contour, most typical domain type model is the C-V Level Set Models that han and Vese propose on the basis of Level Set Method, and this model utilization evolution inside or outside of curve section gray average promotes curve evolvement.Shape prior pattern type utilizes level set function to express the shape of sample, directly the develop principal ingredient of curve of level set function is analyzed, then by the training to target shape obtain target prior shape, then add the shape constraining item in movable contour model, the difficult point of this model is to express accurately objective trait.The mixed type parted pattern mainly is that three is before interosculated, and uses part and the global information of image.
Although having obtained immense success based on level set image segmentation area research personnel, still have problems.Although the C-V model has been used the area information of image, it can't obtain satisfied segmentation result to the inhomogeneous image of intensity profile.For this reason, Li and his team have proposed local two-value match (LBF) model, and this model defines local two-value match amount by introducing kernel function.The LBF model can effectively be cut apart the inhomogeneous image of intensity profile, and higher precision is arranged, but, because this model has adopted the gradient information of image border, so it is relatively responsive to choosing of initial profile, and choosing difference and may cause the far from each other of segmentation result along with initial profile.Its antimierophonic performance is not high simultaneously, for baroque medical image segmentation DeGrain.
Summary of the invention
The object of the invention is to the weak point for above-mentioned LBF model, a kind of medical image cutting method based on hereditary Kernel fuzzy clustering is proposed, with solve the LBF model for initial profile the responsive and low problem of noise robustness, thereby the raising medical image cut apart quality.
Technical solution of the present invention is: the gray-scale value that will obtain first the dendrogram picture of medical image carries out cluster, again with each cluster centre
Be encoded into character string with 8 bits, form cluster colony, calculate respectively the objective function of cluster
With the ideal adaptation degree
, to the colony's service condition when former generation
, condition is satisfied then to finish algorithm, and obtain Optimal cluster centers, and calculate optimum membership function by following formula,
Utilize maximum membership grade principle
Determine the classification that medical image gradation data collection is affiliated, obtain the optimum cluster image
Pass through again
Determine the initial profile of Level Set Models;
At last, being applied to the LBF model cuts apart medical image.
The present invention utilizes hereditary Kernel fuzzy clustering algorithm to obtain the optimum cluster result of pending medical image, and the initial profile that then cluster result is applied to the LBF model is to Image Segmentation Using, can accomplish blood-vessel image is had higher efficient and the accuracy cut apart.
Concrete grammar may further comprise the steps:
1) obtain the dendrogram picture of medical image:
The dot product in so former sample space at feature space can be with the Mercer kernel representation:
1-1) establish initialization cluster centre number
, and according to cluster numbers the gray-scale value of medical image is carried out cluster, with each cluster centre
Be encoded into character string with 8 bits, form cluster colony;
1-2) establish the maximum evolutionary generation of genetic algorithm
, group size
, crossover probability
, the variation probability
, nuclear parameter
, the weight index
, generate at random
Individual initial population
, and order
1-3) will
The string of binary characters decoding of individual colony represents with real number form, utilizes following formula to calculate respectively the objective function of cluster
With the ideal adaptation degree
, wherein
Be
The cluster centre of class,
Be the picture of this center at corresponding nuclear space:
With
And have
1-4) to the colony's service condition when former generation
, finish algorithm when satisfying condition, and skip next step, directly carry out step 1-6), and obtain Optimal cluster centers, calculate optimum membership function by following formula; If do not satisfy
Then carry out next step 1-5):
1-5) when not reaching maximum evolutionary generation
The time, order
,Utilize roulette dish method, single-point bracketing method, mutation operator to current colony select, intersection, mutation operation, produce colony of new generation
, simultaneously reservation is worked as the large individuality of former generation fitness and is arrived
In, turn back to step 1-3) cluster again;
Utilize genetic operator to colony select, crossover and mutation operation, produce colony of new generation
,
Wherein select the operator design as follows:
A) select operation: the individuality that is genetic to a new generation according to the cumulative selection of selected probability; Individual selected probability is:
Wherein
Certain individuality in the expression colony,
Be the size of colony,
Be the ideal adaptation degree;
B) interlace operation: in the character string of coding, by crossover probability a point of crossing is set, then exchanges the position of two pairs of character strings of back;
C) mutation operation: the probability that variation is set is 5%, selects at random a son touring, and is inserted into a position at random;
Utilize maximum membership grade principle
Determine the classification that medical image gradation data collection is affiliated, obtain the optimum cluster image
3) initial profile that obtains according to step 2 is applied to the LBF model medical image is cut apart;
If given image I:
Be given original image territory, d is the image dimension; With curve C as the zero level set function
, the zone
With
Corresponding respectively
With
, the LBF model can be expressed as:
Wherein
Weight coefficient,
Be respectively the zone
With
Being similar to of gradation of image, and evolution rule is:
In addition, add the length regularization term
Guarantee the slickness of contour curve, in order to guarantee after a period of time not loss of gloss slip of horizontal odd function, increase the energy penalty term simultaneously:
Adopt gradient descent flow and the variational method to obtain following curve evolvement equation:
To EVOLUTION EQUATION
Discretize obtains following expression:
Try to achieve new level set function according to following formula
, by
positive and negatively obtain new cut zone, and whether the determined level set function restrain, if not then forward step 2 to and continue iteration with new level set function and cut zone, otherwise stops iteration, obtains final segmentation result.
Description of drawings
Fig. 1 is the blood vessel original image.
Fig. 2 is initial profile 1 figure of LBF model.
Fig. 3 is that the LBF model is for the segmentation result figure of initial profile 1.
Fig. 4 is initial profile 2 figure of LBF model.
Fig. 5 is that the LBF model is for the segmentation result figure of initial profile 2.
Fig. 6 is segmentation result figure of the present invention.
Fig. 7 is brain MR original image.
Fig. 8 is for adding the brain MR image of noise.
Fig. 9 is the segmentation result figure of LBF model.
Figure 10 is segmentation result figure of the present invention.
Embodiment
Effect of the present invention further specifies by following emulation experiment:
Experimental situation is Matlab7.1, CORE i3 CPU, internal memory 4GB.Experimental data is angiographic image and MR image.
The specific implementation process is as follows:
Step 1: the dendrogram picture that obtains medical image.
The dot product in so former sample space at feature space can be with the Mercer kernel representation:
1-1 sets initialization cluster centre number
, and according to cluster numbers the gray-scale value of medical image is carried out cluster, with each cluster centre
Be encoded into character string with 8 bits, form cluster colony.
1-2 sets the maximum evolutionary generation of genetic algorithm
, group size
, crossover probability
, the variation probability
, nuclear parameter
, the weight index
, generate at random
Individual initial population
, and order
1-3 will
The string of binary characters decoding of individual colony represents with real number form, utilizes
Calculate respectively the objective function of cluster
With the ideal adaptation degree
, wherein
Be
The cluster centre of class,
Be the picture of this center at corresponding nuclear space, and have
1-4 is to the colony's service condition when former generation
, condition is satisfied then to finish algorithm, obtains Optimal cluster centers, and passes through
Calculate optimum membership function, and go to (6), otherwise go to (5).
1-5 ought not reach maximum evolutionary generation
The time, order
, utilize roulette dish method, single-point bracketing method, mutation operator to current colony select, intersection, mutation operation, produce colony of new generation
, simultaneously reservation is worked as the large individuality of former generation fitness and is arrived
In, go to (3).
Utilize genetic operator to colony select, crossover and mutation operation, produce colony of new generation
,
Genetic operator is and how selects, crossover and mutation.Wherein select the operator design as follows:
(1) selects operation
Adopt the roulette wheel selection method to select the higher individuality of fitness and be genetic to the next generation, namely be genetic to the individuality of a new generation according to the cumulative selection of selected probability.Individual selected probability is:
Wherein
Certain individuality in the expression colony,
Be the size of colony,
Be the ideal adaptation degree.
(2) interlace operation
Interlace operation adopts the single-point bracketing method that two pairing individualities are operated, and namely by crossover probability a point of crossing is set in the character string of coding, then exchanges the position of two pairs of character strings of back.
(3) mutation operation
The probability that variation is set is 5%, selects at random a son touring, and is inserted into a position at random.
1-6 utilizes maximum membership grade principle
Determine the classification that medical image gradation data collection is affiliated, obtain the optimum cluster image
Step 3: according to the initial profile that step 2 obtains, be applied to the LBF model medical image is cut apart.
Suppose given image I:
Be given original image territory, d is the image dimension.With curve C as the zero level set function
, the zone
With
Corresponding respectively
With
, the LBF model can be expressed as:
Wherein
,
Weight coefficient,
,
Be respectively the zone
With
Being similar to of gradation of image, and evolution rule is:
Gaussian kernel function, the Heaviside function, namely
In addition, add the length regularization term
Guarantee the slickness of contour curve, in order to guarantee after a period of time not loss of gloss slip of horizontal odd function, increase the energy penalty term simultaneously:
Adopt gradient descent flow and the variational method to obtain following curve evolvement equation:
Try to achieve new level set function according to following formula
, by
positive and negatively obtain new cut zone, and whether the determined level set function restrain, if not then forward step 2 to and continue iteration with new level set function and cut zone, otherwise stops iteration, obtains final segmentation result.
Experiment 1. comparisons for blood-vessel image this paper model and LBF model:
From blood vessel original image Fig. 1, carry out the LBF model intercepting of initial profile 1 as shown in Figure 2.The LBF model is for the segmentation result of initial profile 1 as seen from Figure 3, and Fig. 5 is the segmentation result to the initial profile 2 of the LBF model of Fig. 4.
It is a width of cloth that the present invention adopts above experimental data
The blood vessel gray level image, can obtain the cluster result of hereditary Kernel fuzzy clustering algorithm according to step 1.Cluster centre is in step 1
, greatest iteration number
, window size N is
, choose at random the initial population number
, crossover probability
, the variation probability
, nuclear parameter
, the weight index
After setting, initial parameter calculates respectively the objective function of cluster according to step 1-3
With the ideal adaptation degree
Judge according to step 1-4 for existing colony, wherein
, when satisfying
The time forward step 1-6 to, finally obtain optimum cluster, when not satisfying above-mentioned condition, go to step 1-5, and do not reach maximum evolutionary generation
The time, order
, utilize roulette dish method, single-point bracketing method, mutation operator to current colony select, intersection, mutation operation, produce colony of new generation
, simultaneously reservation is worked as the large individuality of former generation fitness and is arrived
In, go to (3).Finally can obtain the optimum cluster result of blood-vessel image according to above step
Then pass through
Determine the initial profile of Level Set Models, herein
It is enlightening carat function.Final step is the initial profile substitution level set function that utilizes hereditary kernel clustering to obtain, and carries out EVOLUTIONARY COMPUTATION according to step 3, time step in this step
, the Heaviside function
, finally obtain this paper segmentation result Fig. 6.
By experiment, and comparison diagram 6 and Fig. 5 can find out, the segmentation result of the Different L BF model of choosing along with initial profile is far from each other, and segmentation error rate is higher, and is relatively more responsive for choosing of initial profile.And therefore this paper model does not exist the initial profile sensitive issue owing to do not rely on initial profile, and can find out that from experimental result this paper model can accomplish blood-vessel image is had higher efficient and the accuracy cut apart.
Experiment 2. comparisons for MR image this paper model and LBF model.
Experimental data is to add Gaussian noise
The MR image.Fig. 8 is 0 for add average in Fig. 7, and variance is 0.02 MR image.Cluster centre is in step 1
, greatest iteration number
, window size N is
, choose at random the initial population number
, crossover probability
, the variation probability
, nuclear parameter
, the weight index
After setting, initial parameter calculates respectively the objective function of cluster according to step 1-3
With the ideal adaptation degree
Judge according to step 1-4 for existing colony, wherein
, when satisfying
The time forward step 1-6 to, finally obtain optimum cluster, when not satisfying above-mentioned condition, go to step 1-5, and do not reach maximum evolutionary generation
The time, order
, utilize roulette dish method, single-point bracketing method, mutation operator to current colony select, intersection, mutation operation, produce colony of new generation
, simultaneously reservation is worked as the large individuality of former generation fitness and is arrived
In, go to (3).Finally can obtain the optimum cluster result of blood-vessel image according to above step
Then pass through
Determine the initial profile of Level Set Models, herein
It is enlightening carat function.Final step is the initial profile substitution level set function that utilizes hereditary kernel clustering to obtain, and carries out EVOLUTIONARY COMPUTATION according to step 3, time step in this step
, the Heaviside function
, finally obtain this paper segmentation result Figure 10.
And Fig. 9 is the segmentation result figure of LBF model.
By experiment, comparison diagram 9,10 can find out: the LBF model is responsive for noise ratio, and this paper invention algorithm LBF model of comparing has better segmentation precision and efficient, has higher robustness.Wherein the LBF model average computation time is 2.25s, and this paper invention required time is 0.58s, has improved to a great extent counting yield.
Claims (2)
1. based on the level set medical image partition method of hereditary Kernel fuzzy clustering, its feature spy is: the gray-scale value that will obtain first the dendrogram picture of medical image carries out cluster, again with each cluster centre
Be encoded into character string with 8 bits, form cluster colony, calculate respectively the objective function of cluster
With the ideal adaptation degree
, to the colony's service condition when former generation
, condition is satisfied then to finish algorithm, and obtain Optimal cluster centers, and calculate optimum membership function by following formula,
Utilize maximum membership grade principle
Determine the classification that medical image gradation data collection is affiliated, obtain the optimum cluster image
At last, being applied to the LBF model cuts apart medical image.
2. described level set medical image partition method based on hereditary Kernel fuzzy clustering according to claim 1, its feature spy is may further comprise the steps:
1) obtain the dendrogram picture of medical image:
The dot product in so former sample space at feature space can be with the Mercer kernel representation:
1-1) establish initialization cluster centre number
, and according to cluster numbers the gray-scale value of medical image is carried out cluster, with each cluster centre
Be encoded into character string with 8 bits, form cluster colony;
1-2) establish the maximum evolutionary generation of genetic algorithm
, group size
, crossover probability
, the variation probability
, nuclear parameter
1-3) will
The string of binary characters decoding of individual colony represents with real number form, utilizes following formula to calculate respectively the objective function of cluster
With the ideal adaptation degree
, wherein
Be
The cluster centre of class,
For this center at corresponding nuclear space
1-4) to the colony's service condition when former generation
, finish algorithm when satisfying condition, and skip next step, directly carry out step 1-6), and obtain Optimal cluster centers, calculate optimum membership function by following formula; If do not satisfy
Then carry out next step 1-5);
1-5) when not reaching maximum evolutionary generation
The time, order
, utilize roulette dish method, single-point bracketing method, mutation operator to current colony select, intersection, mutation operation, produce colony of new generation
, simultaneously reservation is worked as the large individuality of former generation fitness and is arrived
In, turn back to step 1-3) cluster again;
Utilize genetic operator to colony select, crossover and mutation operation, produce colony of new generation
,
Wherein select the operator design as follows:
A) select operation: the individuality that is genetic to a new generation according to the cumulative selection of selected probability; Individual selected probability is:
Wherein
Certain individuality in the expression colony is the size of colony, is the ideal adaptation degree;
B) interlace operation: in the character string of coding, by crossover probability a point of crossing is set, then exchanges the position of two pairs of character strings of back;
C) mutation operation: the probability that variation is set is 5%, selects at random a son touring, and is inserted into a position at random;
1-6) utilize maximum membership grade principle to determine the classification that medical image gradation data collection is affiliated, obtain the optimum cluster image;
3) initial profile that obtains according to step 2 is applied to the LBF model medical image is cut apart;
If given image I:
,
Be given original image territory, d is the image dimension; With curve C as the zero level set function
, the zone
With
Corresponding respectively
With
, the LBF model can be expressed as:
Wherein
,
Weight coefficient,
With
Be respectively the zone
With
Being similar to of gradation of image, and evolution rule is:
In addition, add the length regularization term
Guarantee the slickness of contour curve, in order to guarantee after a period of time not loss of gloss slip of horizontal odd function, increase the energy penalty term simultaneously:
Adopt gradient descent flow and the variational method to obtain following curve evolvement equation:
Try to achieve new level set function according to following formula
, by
positive and negatively obtain new cut zone, and whether the determined level set function restrain, if not then forward step 2 to and continue iteration with new level set function and cut zone, otherwise stops iteration, obtains final segmentation result.
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