Embodiment
1, the structure of phage antibody library and affine screening
1.1 material
Bacterial strain and plasmid
The biomaterial that uses among the present invention comprises: e. coli jm109 bacterium, XLI-Blu bacterium (Invitrogen); Phage antibody library Fab segment table reach carrier p3MH (Barbas CF 3rd, KangAS, Lerner RA, Benkovic SJ.Proc Natl Acad Sci U S is Sep15 A.1991; 88 (18): 7978-82)
Toolenzyme, reagent
Restriction enzyme is available from New England Biolabs company;
T4 dna ligase, pGEM-T Easy support agent box, reversed transcriptive enzyme are available from Promega company;
Pyrobest archaeal dna polymerase, dna molecular amount standard DL2000 are available from TaKaRa company;
TRIzol Reagent is available from Invitrogen company;
Adenosine diphosphate (ADP) (ADP) is the Biopool product;
Dna fragmentation reclaims test kit available from OMEGABIO-TEK company;
It is Time Inc. available from the sky that plasmid reclaims test kit;
The anti-M13 antibody of horseradish peroxidase-labeled is available from amersham pharmacia company;
Other chemical reagent commonly used are import or homemade analytical pure;
1.2 method
1.2.1 mouse spleen separates the preparation lymphocyte
The eyeball of mouse dehematize, bubble is to 75% ethanol.Take out mouse and place on the flat board ventricumbent position.Pick up left side fur portion with tweezers, cut off skin, peritonaeum, separating spleen is placed in the plate.Softly cut off spleen both sides mesentery and surrounding tissue, in plate, add 1-2ml physiological saline, the washing of jog plate.Gently push the spleen coating with flat flat tooth tweezers, spleen cell is extruded onto in the plate, form cell suspension.In advance prior to adding 3ml mouse lymphocyte parting liquid in the test tube, add the 6ml cell suspension again and add and fashionablely slowly add along tube wall, form different liquid level layers.The centrifugal 2000rpm of room temperature 30 minutes gently around drawing the liquid level cell, adds the washing of physiological saline 6-8ml mixing.Centrifugal 1500rpm abandoned supernatant in 5 minutes, and the gained precipitation is lymphocyte.
1.2.2 the extraction of splenic lymphocyte cell total rna
Get lymphocyte suspension counting, by 1 * 10
7The cell branch is packed in the EP pipe, and centrifugal 5 minutes of 1500rpm abandons physiological saline, stays cell precipitation.In every pipe, add 1ml TRIzol respectively, shake up to cell debris cleaved fully repeatedly with hand.After room temperature left standstill several minutes, every pipe added the 0.2ml chloroform, and vibration shakes up repeatedly in hand, and room temperature left standstill 10 minutes.The EP pipe is placed the high speed tabletop refrigerated centrifuge, 4 ℃, centrifugal 30 minutes of 12000rpm.The careful upper phase of drawing places another aseptic EP pipe, and Yu Guanzhong adds equal-volume Virahol, precipitation at room temperature 10 minutes.4 ℃, centrifugal 20 minutes of 12000rpm abandons supernatant, and precipitation is washed one time with 75% ethanol.Sedimentary RNA is sure not to drain at natural drying at room temperature.The resuspended dried RNA of the pure water that every effective 30ml does not have the RNA enzyme.It is synthetic or put-70 ℃ of prolonged preservation to place ice bath to be used for cDNA immediately.
1.2.3RNA denaturing formaldehyde electrophoresis
Running gel: 0.3g agarose, 21.6ml do not have the deionized water of RNA enzyme, after the microwave oven heating and melting, add 3ml 10 * mops again, 5.4ml formaldehyde.
Sample preparation: 5 μ l RNA samples, 5 μ l, 10 * mops, 25 μ l methane amides, behind the 9 μ l formaldehyde mixings, 56 ℃ of reactions added that the sample damping fluid carries out electrophoresis after 15 minutes.
Electrode buffer (10 *): 0.4M mops, 0.1M sodium-acetate, 0.01M EDTA.
After electrophoresis finishes, EB dyeing, ultraviolet visualization.
1.2.4PCR primer
Primer of the present invention is mainly used in the full-length gene of amplification IgG antibody heavy chain Fd part, light chain κ chain, and is specific as follows.
Heavy chain of antibody Fd gene primer is used to increase:
A (justice) 5 '-CCAGTTCG
GAGCTCGTTGTGACTCAGGAATCT-3 ' (sEQ ID NO:9)
B (justice) 5 '-CCAGTTCC
GAGCTCGTGTTGACGCAGCCGCCC-3 ' (SEQ ID NO:10)
C (justice) 5 '-CCAGTTCC
GAGCTCGTGCTCACCCAGTCTCCA-3 ' (SEQ ID NO:11)
D (justice) 5 '-CCAGTTCC
GAGCTCCAGATGACCCAGTATCCA-3 ' (SEQ ID NO:12)
E (justice) 5 '-CCAGATGT
GAGCTCGTGATGACCCAGACTCCA-3 ' (SEQ ID NO:13)
F (justice) 5 '-CCAGATGT
GAGCTCGTCATGACCCAGTCTCCA-3 ' (SEQ ID NO:14)
G (justice) 5 '-CCAGTTCC
GAGCTCGTGATGACACAGTCTCCA-3 ' (SEQ ID NO:15)
H (antisense) 5 '-CCG
ACTAGTTCATTTCAGCTCCAGCCAGGTG-3 ' (SEQ ID NO:16)
I (antisense) 5 '-CTCGAC
ACTAGTTTTGCGCTCAACTGTCTT-3 ' (SEQ IDNO:17)
J (antisense) 5 '-TGTGTG
ACTAGTGTCACCAAGTGGGGTTTT-3 ' (SEQ ID NO:18)
K (antisense) 5 '-GCATGA
ACTAGTTGGGGGACCATATTTGGA-3 ' (SEQ ID NO:19)
Light chain of antibody full-length gene primer is used to increase:
L (justice) 5 '-AGGT
CTCGAGCTCGAGTCTGG-3 ' (SEQ ID NO:20)
M (justice) 5 '-AGGT
CTCGAGCTCGAGTCAGG-3 ' (SEQ ID NO:21)
N (justice) 5 '-AGGT
CTCGAGTCCGAGTCTGG-3 ' (SEQ ID NO:22)
O (justice) 5 '-AGGT
CTCGAGTTCGAGTCAGG-3 ' (SEQ ID NO:23)
P (justice) 5 '-AGGT
CTCGAGGCTGAGTCTGG-3 ' (SEQ ID NO:24)
Q (justice) 5 '-AGGT
CTCGAGCGTAAGTCTGG-3 ' (SEQ ID NO:25)
R (justice) 5 '-AGGT
CTCGAGGGAAAGTCAGG (SEQ ID NO:26)
S (antisense) 5 '-GACTTGG
TCTAGACGAGACGGTGAC-3 ' (SEQ ID NO:27)
*The line part is respectively the restriction enzyme site of XhoI, SpeI, SacI, XbaI.
1.2.5 antibody is light, the foundation (RT-PCR) in heavy chain gene library
Get the total RNA of 10 μ g, add AMV 5 * damping fluid 10 μ l successively, Oligo (dT) (500ng/ μ l) 2 μ l, 10mmol/L dNTPs4 μ l, Rnasin (50U/ μ l) 1 μ l, deionized water mend to 50 μ l, ThermoScript II 100U, and 42 ℃ were extended 1 hour.70 ℃ of deactivation reversed transcriptive enzymes 15 minutes are put in the ice bath, and product is cDNA first chain.In 100 μ l PCR reaction systems, add reverse transcription product 2 μ l respectively then, Pyrobest enzyme 10 * buffer 10 μ l, each 1 μ l of upstream and downstream primer, 10mmol/L dNTPs 1 μ l adds Pyrobest enzyme 2-5U, and deionized water is mended to 100 μ l.95 ℃ of sex change 5 minutes, loop parameter is: 94 ℃ 1 minute, 50 ℃ 1 minute, 72 ℃ 1 minute, totally 35 circulations were extended 10 minutes after 72 ℃.
1.2.6DNA segmental purifying
With the dna fragmentation purification kit of OMEGABIO-TEK company, purifying carries out to specifications.With the gel electrophoresis of 0.8% plain agar sugar, isolate the dna fragmentation that desire reclaims, under long wave ultraviolet light, downcut the blob of viscose that contains target DNA fragment, put into centrifuge tube, add the long-pending change glue of three times of colloids, blob of viscose is dissolved in 55 ℃ of water-baths fully.Add DNA then and reclaim post, room temperature was placed 2 minutes, and 10, centrifugal 30 seconds of 000rpm, lavation buffer solution 1ml washes twice to precipitation respectively, and the centrifugal waste liquid of abandoning is added in the post with 50 μ l deionized waters, room temperature was placed after 2 minutes, and centrifugal, the dna fragmentation of purifying is in the aqueous solution.
1.2.7 the structure of carrier P3MH/Z12L and P3MH/Z12H
From the carrier pGEM-Teasy/Z12L and pEM-Teasy/Z12H of clonal antibody Z12 light chain total length and heavy chain Fd section, the method by PCR regains antibody gene.After the PCR product of carrier P3MH and purifying cut digestion according to enzyme accordingly respectively, connect, transform XLI-Blu host bacterium, the evaluation after enzyme is cut and checked order successfully makes up P3MH/Z12L and P3MH/Z12H carrier.
1.2.8 the enzyme of carrier DNA and purified pcr product is cut
Double digestion in the antibody library gene clone
Endonuclease reaction carries out routinely, and generally 37 ℃ of water-baths 3-4 hour at least, but also digested overnight is the longest not above 20 hours.Carrier DNA consumption and PCR product amount ratio are 10: 1.Need carry out electrophoresis behind the endonuclease reaction with the required fragment of purifying, method is as described in the 1.2.6.
1.2.9 electricity changes the preparation of competence bacterium XLI-Blu
Select the single bacterium colony of an XLI-Blu in LB-tsiklomitsin plate, 2 * YT nutrient solution of 10ml tetracyclin resistance is gone in inoculation, and 37 ℃ of shaking culture are spent the night.Get above-mentioned bacterium liquid and do dilution in 1: 50,500ml2 * YT nutrient solution is gone in inoculation, wherein contains 10ml 20% glucose and 5ml1mol/L magnesium chloride, and 37 ℃ of shaking culture are to OD
600=0.7-0.8.Above-mentioned microbial culture liquid was placed ice bath 15 minutes, and 4 ℃ of 4000rpm are centrifugal 20 minutes.Abandon supernatant, add 10% glycerine of 250ml precooling, 4 ℃ of 4000rpm are centrifugal 20 minutes.Abandon supernatant and repeat previous step.Abandoning supernatant, is 10% glycerine of 20ml precooling with total amount, the re-suspended cell precipitation, and ice bath left standstill 30 minutes, and 4 ℃ of 3500rpm are centrifugal 20 minutes.Abandon supernatant, add 1ml10% glycerine re-suspended cell, the packing tubule uses or-70 ℃ of prolonged preservation immediately.
1.2.10 phage antibody library (κ/Z12) and the structure of phage antibody library (H/Z12)
Get enzyme and cut the carrier DNA 2 μ g that digestion back purifying reclaims, pre-enzyme is cut light chain or each 500ng of heavy chain gene library, adds 2 μ l high density ligase enzymes, adds corresponding connection damping fluid, and 16 ℃ connect 12-16 hour.Getting the good electricity of prepared beforehand changes competence bacteria XLI-Blu 400 μ l and adds above-mentioned connection product and put in the ice bath.Other gets the space is one of 0.2cm electricity revolving cup, and above-mentioned every pipe mixture is added gently along tube wall, notes no bubble, puts in the sub-electroporation of electric revolving cup, and the voltage when the electricity commentaries on classics is set is 2.5KV, shocks by electricity 30 seconds-1 minute.Stand on after electricity changes and add 2ml SOC nutrient solution in each electric revolving cup, change over to immediately then in the bacteriological incubator, 37 ℃ of shaking culture 1 hour.Therefrom get 10 to 50 μ l nutrient solutions, be diluted to different concns after, be applied to respectively in the 2 * YT plate that contains Amp, to detect transformation efficiency and to calculate storage capacity, all the other bacterium liquid change a triangular flask over to, add the fresh 2 * YT nutrient solution that contains Amp of 10ml, 37 ℃ of shaking culture 1 hour.Add 100ml and contain Amp and the two anti-2 * YT nutrient solutions of tsiklomitsin, 37 ℃ of shaking culture 1 hour.Add 10
12Pfu helper phage VSCM13,37 ℃ of shaking culture 2 hours.Add 50 μ g/ml kantlex, 37 ℃ of shaking culture are spent the night.4 ℃ of above-mentioned inoculum 4000rpm is centrifugal 20 minutes.Supernatant is put another aseptic triangular flask, after adding 4%PEG8000 and the 3%NaCl dissolving, be positioned in the ice bath, precipitate 30 minutes.4 ℃ of 9000rpm are centrifugal 20 minutes then.With the resuspended phage precipitation of the aseptic PBS of 2ml (pH=7.4), instantaneous centrifugal.Supernatant is phage antibody library, and this antibody library is distributed into tubule, and is stand-by or deposit-20 ℃.
1.2.11 the affine enrichment screening of phage antibody library
The antigen (rhTNF α) that will be used to screen specific antibody is made a certain amount of dilution back bag by 96 orifice plates with the 0.1mol/LpH9.6 soda-sodium bicarbonate solution, and 4 ℃ are spent the night.Adsorption antigen not in the next day flush away plate is with 3%BSA-PBS or with 37 ℃ of sealings of 10% calf serum 1 hour.Abandon confining liquid, in every hole, add 50-70 μ l phage antibody library, hatched 2 hours for 37 ℃.Abandon Kong Zhongwei in conjunction with phage, (0.5%Tween20) washing lotion is washed each hole for the 50mmol/Ltris-HCl of pH7.5,150mmol/L sodium-chlor, washes altogether 10~20 times, makes abundant flush away non-specific adsorption phage with TBS/Tween20.With distillation washing twice, the liquid in every hole is blotted only.Add 3~5 μ l 2mol/L tris alkali, the pH value that makes solution about 7, the phage solution that elutes with neutralization.The OD that adds the 2ml prepared fresh immediately
600XLI-Blu bacterium about=1, incubated at room 15-20 minute.Change in the 200ml triangular flask, add 10ml and contain Amp and the two anti-2 * YT nutrient solutions of tsiklomitsin, get 10 μ l phage solutions immediately, be diluted to the phage that different concns elutes with titration, 37 ℃ of shaking culture of rest part 1 hour.Add 100ml and contain Amp and the two anti-2 * YT nutrient solutions of tsiklomitsin, 37 ℃ of shaking culture 1 hour.Add 10
12Pfu helper phage VSCM13,37 ℃ of shaking culture 2 hours.Add 50 μ g/ml kantlex, 37 ℃ of shaking culture are spent the night.Phage after collect cultivating is as described in the 1.2.10.Repeat above enrichment screening step, no longer rise until input-output ratio, after many wheel enrichment screenings, with the XLI-Blu bacterium of the phage-infect prepared fresh that elutes, 37 ℃ of overnight incubation, preserving length has the plate of single bacterium colony stand-by in 4 ℃.
1.2.12 helper phage seed culture of viruses preparation
The single XLI-Blu colony inoculation of picking is gone into 10ml and is contained in 2 * YT nutrient solution of tsiklomitsin from plate.37 ℃ of shaking culture are spent the night.10ml is gone in above-mentioned incubated overnight bacterium 1: 500 dilution contain in 2 * YT nutrient solution of tsiklomitsin, 37 ℃ of shaking culture 1 hour.The single phage virus plaque of picking from the phage culture dish, inoculation are gone in the above-mentioned 10ml bacterium liquid, 37 ℃ of shaking culture 2 hours.Add the 2 * YT nutrient solution that contains 10 μ g/ml tsiklomitsins and 50 μ g/ml kantlex, total amount is to 500ml, and 37 ℃ of shaking culture are spent the night.4 ℃ of 3500-4000rpm are centrifugal 15 minutes.Get supernatant, 70 ℃ of cracking 20 minutes, recentrifuge.Get supernatant, in the aseptic subpackaged tubule, deposit 4 ℃ and can use half a year at least, need Using such method to prepare again after half a year.
1.2.13 the titration of phage seed culture of viruses
Prepare not contain any antibiotic LB culture dish 5-6.With common LB substratum system 0.7% agarose, be the top layer agarose, be chilled to 42 ℃ and 42 ℃ of preservations.Above-mentioned phage solution is done 10
-6, 10
-7, 10
-8, 10
-9, 10
-10Dilution.Get the XLI-Blu bacterium of dilution, OD
600About=1, the packing small test tube, 100 μ l/ small test tubes indicate 10
-6To 10
-10Extent of dilution.Before adding in the step successively the phage of dilution in the dilution test tube of each corresponding standard, 37 ℃ of slow oscillatory reactions 20 minutes.Add top layer agarose 3ml to each test tube, change the previously prepd plate immediately over to and put 37 ℃ of overnight incubation.Calculate the plaque number in the plate, multiply each other, be tally-pfu (particle formingunit) of phage with extension rate.
1.2.14ELISA compare the antibody relative affinity
Rh-TNF α is dissolved in coating buffer (carbonate buffer solution pH 9.6,4 μ g/ml dilution), and wrap by affine 96 orifice plates of ELISA in 100 μ l/ holes, places after 8 hours 37 ℃ of sealings of 10% calf serum 1 hour for 4 ℃.PBST washes plate three times, the phage antibody that adds different concns by 50 μ l/ holes, room temperature 90 minutes, PBST washes plate three times, adds horseradish peroxidase labeling antibody (HRP-antiM13,50 μ l/ holes), after the room temperature 40 minutes, PBST washes plate three times, with the colour developing of OPD Color Appearance System, surveys the OD492nm absorbance.Obtaining combining activity with rh-TNF α according to the final screening of ELISA result clones greater than the phage antibody of Z12.
1.3 result
1.3.1rh-TNF the titration of alpha immunization mice serum, total RNA extract
Measuring the result (Fig. 1 .3.1.1) that immune serum tires from ELISA can see, the immunity of succeeding of five mouse after, the abdominal cavity multiple spot multiple injection subcutaneous through r-TNF α, and immune serum is tired and is on average reached about 1: 200000.
Extract cell total rna test handbook (Invitrogen company provides) according to mouse spleen lymphocyte separating experiment method and TRIzol Reagent, extract the total RNA of successful immune mouse splenic lymphocyte (Fig. 1 .3.1.2).
1.3.2 the acquisition of phage antibody gene library
From mouse spleen lymphocyte, extract total RNA, through reverse transcription, add special primer, with 35 circulations of high-fidelity DNA polymerase amplification, the clear band of about 660bp be can obtain, heavy chain of antibody Fd fragment gene library and light chain full-length gene library (Fig. 1 .3.2.1) are respectively.
1.3.3 the evaluation of phage antibody expression vector P3MH, P3MH/Z12L and P3MH/Z12H construction of recombinant plasmid
Structure synoptic diagram (Fig. 1 .3.3.1) by phage antibody expression vector P3MH, show by restriction enzyme digestion and electrophoresis result (Fig. 1 .3.3.2), carrier p3MH by SacI, XbaI, XhoI and four kinds of enzyme single endonuclease digestions of SpeI after, compare with empty carrier and all to be linearizing, show that SacI, XbaI, XhoI and four restriction enzyme sites of SpeI on the carrier p3MH are all excellent, can be used for Fd and light chain Cloning of Entire Gene.
With SacI, XbaI double digestion pGEM-T Easy/Z12 κ, obtain the light chain full-length gene of antibody.Its p3MH carrier with process SacI, XbaI double digestion is connected.Through transforming, choose the clone, the upgrading grain, carry out enzyme and cut evaluation (Fig. 1 .3.3.3), the result shows, behind the double digestion of the clone in the sample 2,3,4 (Fig. 1 .3.3.3) through SacI and XbaI, all obtains the light chain gene of 660bp, and do not obtain the fragment of 1.2Kb, illustrate that light chain gene has been cloned on the p3MH carrier; It is checked order (Fig. 1 .3.3.4), the result is correct, shows successfully to make up the P3MH/Z12L recombinant plasmid.
Adopt and use the same method, will cut the heavy chain of antibody Fd gene that obtains from pGEM-T Easy/Z12Fd through XhoI, SpeI enzyme and be connected with above-mentioned, make up prokaryotic expression recombinant plasmid P3MH/Z12H through the p3MH carrier of XhoI, SpeI double digestion.Through transforming, choose the clone, the upgrading grain is identified (Fig. 1 .3.3.5), and order-checking (Fig. 1 .3.3.6) success, shows successfully to make up the P3MH/Z12H recombinant plasmid.
Replace the method that (chain shuffling) principle is tested according to chain, will make up phage antibody library (H/Z12 κ) by heavy chain of antibody gene library and the recombinant plasmid p3MH/Z12L that the PT-PCR amplification obtains; Simultaneously, light chain of antibody gene library and recombinant plasmid p3MH/Z12H are made up phage antibody library (κ/Z12H).Determine the storage capacity of antibody library by the titration of phage seed culture of viruses, titration determines that (κ/Z12H) and (H/Z12 κ) have all reached 1 * 10 to phage antibody library according to the phage seed culture of viruses
7
1.3.4 phage antibody library (enrichment screening that κ/Z12H) and phage antibody library (H/Z12 κ) are affine
The affine enrichment screening of phage antibody library generally with input-output ratio (O/I ratio) as affine enrichment index.Good enrichment screening is taken turns after the screening through each, and input-output ratio can increase with exponential.When its input-output ratio no longer increases, perhaps even when negative growth occurring, affine enrichment screening process can stop, otherwise affine enrichment screening process can be carried out always, till above-mentioned situation occurring (table 1.3.4.1).
Enrichment screening that table 1.3.4.1 phage antibody library is affine
1.3.5 compare the relative affinity of phage selection antibody by ELISA
Single clone phage with obtaining after the affine enrichment screening obtains phage antibody by infecting the host bacterium, with phage antibody Z12 relatively to the bonding force of r-TNF α.The positive colony (the part positive findings is seen Fig. 1 .3.5.1) that adopts ELISA each phage antibody of comparison and r-TNF α relative affinity to obtain, screen 108 phage antibody clones by this method altogether, wherein obtained the phage antibody (seeing Table 1.3.5.1) that 18 antibody relative affinities are higher than Z12.
Table 1.3.5.1 phage antibody qualification result
2, the potential high-affinity chimeric antibody of computer-aided screening
2.1 method
2.1.1 the sequencing of phage antibody positive colony
P140Fab antibody gene pcr amplification product is cloned into respectively on the pGEM-T Easy carrier, through enzyme cut identify errorless after (Fig. 2 .2.1.1), give order-checking company to check order.
2.1.2 the simulation of chimeric antibody variable region three-dimensional conformation
(Protein Data Bank PDB), analyzes by sequence alignment (selecting Fasta3, Blastp program), Kabat, determines its maternal model to utilize the protein structure database.By homology mould (Homology) method of building the antibody variable region of measuring is carried out the simulation of space conformation.Under CVFF, the Amber field of force, select molecular mechanics, kinetics dynamic simulation that its conformation is carried out energy-optimisedly (passing through steepest descent (convergence criterion 0.05KJ/mol successively, convergence step 5000 step), conjugate gradient (convergence criterion 0.01KJ/mol, convergence step 10000 step)).
2.1.3 the simulation of chimeric antibody variable region and TNF α interaction mixture space conformation
By TNF alpha-crystal structural models (PDB number: 1tnf), utilize the molecular docking program that chimeric antibody and the interactional composite structure of TNF α are inquired into.Follow " complementary structure, static coupling " principle, under CVFF, the Amber field of force, the optimum matching degree of chimeric antibody and TNF α interaction pattern is carried out theoretical prediction through molecular mechanics, kinetics dynamic simulation.
2.1.4 determining of senior middle school and active chimeric antibody
Association reaction free energy theory, intermolecular hydrogen bonding form theory, by maternal antibody Z12 and the mutual recognition mode of TNF α, determine to have senior middle school and antibody active, high-affinity.
2.2 result
2.2.1 utilize clone, the order-checking of the positive antibody of phage antibody library screening
P140Fab antibody gene pcr amplification product is cloned into respectively on the pGEM-T Easy carrier, through enzyme cut identify errorless after (Fig. 2 .2.1.1), give order-checking company.Obtain 4 of brand-new light chain of antibody full-length gene order information altogether, 14 of heavy chain Fd fragment gene sequence informations.The part sequencing result is as follows: because the antibody gene sequence information is more, sequencing result is example (Fig. 2 .2.1.2 and 2.2.1.3) with antibody H22 heavy chain Fd fragment gene and antibody Ke light chain full-length gene order only.
2.2.2 antibody variable region sequential analysis
Utilize
Www.expasy.chThe antibody variable region base sequence that order-checking obtains is translated, obtained its aminoacid sequence (Fig. 2 .2.2.1).Carry out FR, CDR classification analysis (Fig. 2 .2.2.2) by Kabat database antagonist variable region sequences.
2.2.3 the acquisition of antibody variable region space conformation
On graphics workstation Octane2 (R12000), utilize the InsightII2000 routine package to make up screening antibody variable region space conformation.Fig. 2 .2.3.1, Fig. 2 .2.3.2, Fig. 2 .2.3.3 have provided antibody variable region A2H, A4H, CH22 space conformation synoptic diagram respectively.
2.2.4 determining of the structure of Ag-Ab effect mixture, high-affinity antibody
Fig. 2 .2.4.1, Fig. 2 .2.4.2, Fig. 2 .2.4.3 have provided the interactional mixture model of antibody variable region A2H, A4H, H22 and TNF α respectively.Table 2.2.4.1 has listed antibody variable region and TNF α interaction pattern and identified region.Determine that by interactional free energy, intermolecular hydrogen bonding formation number and identified region CH22 has the desirable antibody that is higher than maternal antibody Z12 affinity.
Table 2.2.4.1 antibody-antigenic action pattern analysis
Interaction of hydrogen bond can (KJ) main identified region between antibody molecule
Z12 31 -413.88 135-150
H22 36 -425.37 136-149
A2H 19 -289.54 86-97
A4H 24 -345.21 137-145
Utilize the A Lunniusi formula to calculate, can tentatively draw the more maternal antibody Z12 of the affinity of CH22 antibody affinity height~120 times.
By computer-aided analysis, determine the hTNF-α functional epitope 141-146 position of chimeric antibody CH22 identification; Determine that simultaneously chimeric antibody CH22 keeps 56 important residue (antibody heavy chain variable region V of its biological effect
H: 26-31,48-52,90-95,66-68; Antibody chain variable region V
L: 26-33,52-65,72-76,98-106).
3, the biological function of high-affinity antibody CH22 is measured
3.1 material
Bacterial strain and plasmid
E. coli jm109 bacterium, XLI-Blu bacterium, BL21 bacterium (Invitrogen), single-chain antibody expression vector PET32-c (Novagen), Chinese hamster ovary celI (ATCC, the U.S.), PWS3 carrier (silver, Yu Lizhang, Lv Yingqian, Ai Junkui etc., Chinese Medical Journal, 2003,83 (4): 333-338)
Toolenzyme, reagent
Restriction enzyme: NcoI, BssHII, BstEII, XhoI, XbaI, BamHI, HindIII and EcoRV are available from New England Biolabs company; T4 dna ligase, WizardDNA purification kit, pGEM-T Easy support agent box are Promega company product; Dna fragmentation reclaims test kit, Taq archaeal dna polymerase, dna molecular amount standard DL2000 available from TaKaRa company; Coke diethyl phthalate (DEPC) is the Sigma product; HisTrap (nickel ion chelate column) is available from Novagen company; Lipfectamine2000 is a GIBCO company product; The goat anti-human igg Fc (U.S. Sigma) of DMEM substratum, foetal calf serum, sheep anti mouse Fab polyclonal antibody, horseradish peroxidase-labeled, other chemical reagent commonly used are import or homemade analytical pure.Restriction enzyme is available from New England Biolabs company; T4 dna ligase, pGEM-T Easy support agent box, reversed transcriptive enzyme are available from Promega company; PyrobestDNA polysaccharase, dna molecular amount standard DL2000 are available from TaKaRa company; TRIzolReagent is available from Invitrogen company; Adenosine diphosphate (ADP) (ADP) is the Biopool product; Dna fragmentation reclaims test kit available from OMEGABIO-TEK company; It is Time Inc. available from the sky that plasmid reclaims test kit; The anti-M13 antibody of horseradish peroxidase-labeled is available from amershampharmacia company; Other chemical reagent commonly used are import or homemade analytical pure.
3.2 method
3.2.1 the structure of carrier for expression of eukaryon PWS3H22 and expression
Because the antibody gene that obtains by antibody library does not have leader peptide sequences,, design optimized antibody leader peptide sequences so at first analyze according to BLAST.Behind the cis-acting elements of binding analysis expression vector PWS3, the redesign primer comes out by pcr amplification being cloned in pGEM-TEasy carrier H22 heavy chain and chain variable region gene respectively, is cloned in the PWS3 expression vector, make up the PWS3H22 carrier for expression of eukaryon, carry out the eucaryon transfection.The transfection basic parameter comprises: (1) Chinese hamster ovary celI density is 1 * 10
5Individual/ml, be inoculated in the Tissue Culture Dish of diameter 100mm the day before yesterday in transfection, cell cultures is spent the night, and (2) reach 80% when adherent when cell, complete culture solution is removed, change serum free medium and hatched 2-8 hour, (3) will cut through enzyme and identify errorless expression vector 4 μ g, and 10 μ l liposomes are dissolved in respectively in the DMEM substratum of 250 μ l antibiotic-frees, serum-free, fully behind the mixing, room temperature was placed 5 minutes, and again with two kinds of abundant mixings of solution, room temperature was placed 30 minutes.Treat transfection culturing cell twice with antibiotic-free, serum-free DMEM washing simultaneously, in DNA-liposome mixture, add the DMEM substratum of 2.5ml antibiotic-free, serum-free, mix the back and add in the culturing cell.Culturing bottle is put into 37 ℃ of incubators hatch to inhale after 6 hours and remove nutrient solution, (4) discard transfection liquid, and (5) add the DMEM substratum that 5ml contains microbiotic and 10% calf serum, continue to cultivate about 24 hours.After treating that cell covers with, change the DMEM substratum of serum-free into.Received supernatant in (6) 60 hours, and changed cell over to stably express, the pressurization screening.
3.2.2 chimeric antibody CH22 purifying
Contain chimeric antibody CH22 nutrient solution with after the 0.1mol/LpH8.0PB dialysed overnight, be splined on Protein A Sephorase CL-4B chromatography column, behind same buffer wash-out foreign protein,, collect elution peak and concentrate with pH6.0 citrate buffer solution wash-out CH22.
3.2.3CH22 combine experiment with the TNF-alpha specific
Respectively hTNF-α is separated by affine 96 orifice plates of ELISA and SDS-PAGE with the finite concentration bag, ELISA and Western blot analysis of experiments identify that ScFv-H22 combines with the TNF-alpha specific.(" molecular cloning ") seen in ELISA, Western blot test elementary operation.
3.2.4CH22 the antigen recognition epi-position is determined experiment
The ultrasonic supernatant that will contain hTNF-α, hTNF-α D141-146 is diluted to 10 μ g/ml with coating buffer and wraps quilt.100 μ l/ holes bag is placed after 8 hours for 4 ℃ by affine 96 orifice plates of ELISA, and the 2%BSA sealing is spent the night.PBST washes plate three times, adds CH22 and carries out the ELISA detection by 100 μ l/ holes.Room temperature 90 minutes, PBST washes plate three times, adds horseradish peroxidase labeling antibody (HRP-GAH is available from PIERCE company) 50 μ l/ holes, and room temperature is after 40 minutes, and PBST washes plate three times, with the colour developing of OPD Color Appearance System, surveys A
492nmAbsorbance.
3.2.5L929 in the cell toxicant and the experiment
L929 is a l cell system, and it is extremely sensitive for TNF-α, exists the TNF-α of ng level promptly can cause the mass mortality of L929 cell in the growing environment.Eugonic L929 cell is at first got in this test, determines its activity unit (IU) according to TNF-α Determination of biological activity method, mix with the anti-TNF-Alpha antibodies of different concns with 10IUTNF-α then and with L929 cell (3 * 10
4, the hole) together add 96 well culture plates, add dactinomycin (0.1 μ g/ hole) simultaneously, 37 ℃, 5%CO
2Cultivated 20 hours under the condition, after violet staining, add 33% acetate, enzyme connection instrument is measured A automatically
570nm
3.2.6 chimeric antibody CH22 avidity is measured
Measure the method design experiment that affinity of antibody method-Scatchard analyzes according to classics,,, obtain antibody CH22 and hTNF-α bonded typical curve according to finite concentration dilution antibody (CH22) at first with antigen (hTNF-α) concentration fixed.On this basis, in antibody and antigen bonded saturation concentration scope, get the normal concentration point that some concentration are measured as affinity of antibody, measure binding antibody and reach the not concentration of binding antibody, according to formula B/F=Ka (S-B); B wherein: represent binding antibody concentration, F: represent free antibodies concentration, S: represent the antibody total concn
3.2.7 chimeric antibody CH22, Remicade
Recognition site, affinity, in and specific activity
In order further to determine the biological effect of chimeric antibody CH22, select the clinical treatment antibody Remicade that has ratified by FDA
Experimentize in contrast.Utilize hTNF deletion mutant (hTNF
23-89[expression disappearance 23-89 position residue], hTNF
53-92, hTNF
141-146) recognition site of the two is analyzed, utilize ELISA and cellulotoxic experiment that the two affinity, neutralization activity are compared.
3.3 result
3.3.1 the structure of recombinant expression plasmid PWS3H22 and evaluation
Get the correct clone of sequencing analysis, respectively with XbaI, BamHI digestion pGEM-TEasy/H22V κ S, with XhoI, HindIII digestion pGEM-T Easy/H22VHS, go into after glue reclaims purifying, H22V κ S and H22VHS fragment are cloned in respectively through enzyme cut on the PWS3 expression vector of (BamHI/XbaI, XhoI/HindIII) (Fig. 3 .3.1.1 and Fig. 3 .3.1.2).
3.3.2CH22 detect with hTNF-alpha specific bonded
Can combine with the hTNF-alpha specific by the CH22 that obtains behind ELISA and Western blot evidence process eukaryotic expression and the purifying respectively, prove that the antibody that obtains by above method screening has kept the identification specificity of maternal antibody Z12.(Fig. 3 .3.2.1)
3.3.3CH22 antibody molecule is identified
Contain chimeric antibody CH22 eukaryotic cell expression supernatant, behind Protein ASephorase CL-4B chromatography column purifying, the SDS-PAGE electrophoretic analysis, obtaining molecular weight is 155kDa protein band (Fig. 3 .3.3.1), with human IgG and Remicade
The chimeric antibody molecular weight is identical.
3.3.4CH22 antigen recognition epi-position confirmed test
The theoretical prediction result shows, the antigen recognition epi-position of antibody CH22 and maternal antigen Z12 are consistent, we carry out prokaryotic expression respectively with hTNF α D29-88 deletion mutant, hTNF α D53-91 deletion mutant, hTNF α D141-146 deletion mutant, hTNF, and will express supernatant and be coated in affine 96 orifice plates, detect several different anti-hTNF Alpha antibodies and its two Recognition Different by ELISA, thereby determine the antigen recognition site of antibody, and and Remicade
Antibody and Enbrel
Recognition site compares; The result shows that Z12 and CH22 antigen recognition site are consistent, and and Remicade
(through the anti-hTNF α chimeric antibody of FDA approval listing) and Enbrel
Different.(Fig. 3 .3.4.1)
3.3.5L929 in the cell toxicant and the experiment
Z12 have good in and the cytotoxic ability of hTNF-α, L929 cell toxicant neutralization test is the result show, (table 3.3.5.1) antibody CH22 kept Z12 in and function, and increase on this basis, point out it to have good potential applicability in clinical practice.
Compare with cell toxicant in the anti-TNF-Alpha antibodies of table 3.3.5.1
*Titre is defined as the inverse of the highest diluted sample degree of the cellulotoxic effect that suppresses 10U/ml TNF-α.
3.3.6 chimeric antibody CH22 avidity is measured
According to the result that the classics mensuration affinity of antibody method that method-Scatchard analyzes is measured, the data fitting that records is in alignment, try to achieve this collinear negative slope and be antibody CH22 affinity costant (K
a) the results are shown in Figure 3.3.5.1.
<110〉Beijing Tian-Guang Biotechnology Co., Ltd. Is