AU2002211240A1 - Method and device for identifying a biological sample - Google Patents

Method and device for identifying a biological sample

Info

Publication number
AU2002211240A1
AU2002211240A1 AU2002211240A AU1124002A AU2002211240A1 AU 2002211240 A1 AU2002211240 A1 AU 2002211240A1 AU 2002211240 A AU2002211240 A AU 2002211240A AU 1124002 A AU1124002 A AU 1124002A AU 2002211240 A1 AU2002211240 A1 AU 2002211240A1
Authority
AU
Australia
Prior art keywords
biological sample
data set
peak
identifying
composition
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2002211240A
Inventor
Ping Yip
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Sequenom Inc
Original Assignee
Sequenom Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Sequenom Inc filed Critical Sequenom Inc
Publication of AU2002211240A1 publication Critical patent/AU2002211240A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • H—ELECTRICITY
    • H01—ELECTRIC ELEMENTS
    • H01J—ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS
    • H01J49/00—Particle spectrometers or separator tubes
    • H01J49/0027—Methods for using particle spectrometers
    • H01J49/0036—Step by step routines describing the handling of the data generated during a measurement
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16Z—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS, NOT OTHERWISE PROVIDED FOR
    • G16Z99/00—Subject matter not provided for in other main groups of this subclass

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • General Engineering & Computer Science (AREA)
  • Mathematical Physics (AREA)
  • Software Systems (AREA)
  • Databases & Information Systems (AREA)
  • General Physics & Mathematics (AREA)
  • Data Mining & Analysis (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Automatic Analysis And Handling Materials Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The method and system for identifying a biological sample generates a data set indicative of the composition of the biological sample. In a particular example, the data set is DNA spectrometry data received from a mass spectrometer. The data set is denoised, and a baseline is deleted. Since possible compositions of the biological sample may be known, expected peak areas may be determined. Using the expected peak areas, a residual baseline is generated to further correct the data set. Probable peaks are then identifiable in the corrected data set, which are used to identify the composition of the biological sample. In a disclosed example, statistical methods are employed to determine the probability that a probable peak is an actual peak, not an actual peak, or that the data are too inconclusive to call.
AU2002211240A 2000-09-19 2001-09-18 Method and device for identifying a biological sample Abandoned AU2002211240A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/663,968 2000-09-19
US09/663,968 US7917301B1 (en) 2000-09-19 2000-09-19 Method and device for identifying a biological sample
PCT/US2001/029290 WO2002025567A2 (en) 2000-09-19 2001-09-18 Method and device for identifying a biological sample

Publications (1)

Publication Number Publication Date
AU2002211240A1 true AU2002211240A1 (en) 2002-04-02

Family

ID=24663947

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2002211240A Abandoned AU2002211240A1 (en) 2000-09-19 2001-09-18 Method and device for identifying a biological sample

Country Status (7)

Country Link
US (1) US7917301B1 (en)
EP (1) EP1350211B1 (en)
AT (1) ATE379815T1 (en)
AU (1) AU2002211240A1 (en)
CA (1) CA2422700A1 (en)
DE (1) DE60131680T2 (en)
WO (1) WO2002025567A2 (en)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020155587A1 (en) 2001-04-20 2002-10-24 Sequenom, Inc. System and method for testing a biological sample
WO2003035239A2 (en) 2001-10-26 2003-05-01 Sequenom Inc. Resin dispensing device
DK1660680T3 (en) 2003-07-31 2009-06-22 Sequenom Inc Process for High Level Multiplex Polymerase Chain Reactions and Homogeneous Mass Extension Reactions for Genotyping Polymorphisms
US9394565B2 (en) 2003-09-05 2016-07-19 Agena Bioscience, Inc. Allele-specific sequence variation analysis
CN101233240A (en) 2004-03-26 2008-07-30 斯昆诺有限公司 Base specific cleavage of methylation-specific amplification products in combination with mass analysis
WO2007050602A2 (en) * 2005-10-24 2007-05-03 Chemimage Corporation Automated acquisition of spectral data and image data
EP1940536B1 (en) * 2005-10-25 2012-05-02 Waters Technologies Corporation Baseline modeling in chromatography
CN103336956B (en) * 2013-07-10 2016-08-10 福州大学 A kind of winter wheat area evaluation method based on remote sensing time series data
DE102015010602A1 (en) * 2015-08-18 2017-02-23 Hochschule Aschaffenburg Method for analyzing a data set of a time-of-flight mass spectrometry measurement and a device
US11307569B2 (en) * 2019-02-21 2022-04-19 Oracle International Corporation Adaptive sequential probability ratio test to facilitate a robust remaining useful life estimation for critical assets

Family Cites Families (69)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB1363073A (en) 1970-07-17 1974-08-14 Solartron Electronic Group Generation of trigonometrical and other functions by interpolation between point values
GB1536845A (en) 1975-02-26 1978-12-20 Bell & Howell Ltd Generation of mathematical functions
DE2548891C3 (en) 1975-10-31 1983-04-28 Finnigan MAT GmbH, 2800 Bremen Sample changer for mass spectrometers
US4490806A (en) 1982-06-04 1984-12-25 Research Corporation High repetition rate transient recorder with automatic integration
US4791577A (en) 1985-10-03 1988-12-13 Trw Inc. Frequency shift for removing spurious spectral components from spectrum analyzer output
US4826360A (en) 1986-03-10 1989-05-02 Shimizu Construction Co., Ltd. Transfer system in a clean room
FR2620049B2 (en) 1986-11-28 1989-11-24 Commissariat Energie Atomique PROCESS FOR PROCESSING, STORING AND / OR TRANSFERRING AN OBJECT INTO A HIGHLY CLEAN ATMOSPHERE, AND CONTAINER FOR CARRYING OUT SAID METHOD
US4837726A (en) 1987-06-19 1989-06-06 Applied Biosystems, Inc. Quantitation of chromatographic information
US4802102A (en) 1987-07-15 1989-01-31 Hewlett-Packard Company Baseline correction for chromatography
US5124932A (en) 1988-03-10 1992-06-23 Indiana University Foundation Method for analyzing asymmetric clusters in spectral analysis
GB8816982D0 (en) 1988-07-16 1988-08-17 Probus Biomedical Ltd Bio-fluid assay apparatus
EP0385805B1 (en) 1989-03-03 1996-06-05 Edward W. Stark Signal processing method and apparatus
EP0395481A3 (en) 1989-04-25 1991-03-20 Spectra-Physics, Inc. Method and apparatus for estimation of parameters describing chromatographic peaks
SE9002579D0 (en) 1990-08-07 1990-08-07 Pharmacia Ab METHOD AND APPARATUS FOR CARRYING OUT BIOCHEMICAL REACTIONS
US5121337A (en) 1990-10-15 1992-06-09 Exxon Research And Engineering Company Method for correcting spectral data for data due to the spectral measurement process itself and estimating unknown property and/or composition data of a sample using such method
US5490516A (en) 1990-12-14 1996-02-13 Hutson; William H. Method and system to enhance medical signals for real-time analysis and high-resolution display
US5572125A (en) * 1991-03-25 1996-11-05 Dunkel; Reinhard Correction and automated analysis of spectral and imaging data
US5175430A (en) 1991-05-17 1992-12-29 Meridian Instruments, Inc. Time-compressed chromatography in mass spectrometry
IT1260447B (en) 1992-01-27 1996-04-09 PROCEDURE AND EQUIPMENT FOR THE INTEGRAL AUTOMATION OF AN ANALYSIS LABORATORY
EP0636261A4 (en) 1992-04-16 1998-03-25 Dow Chemical Co Improved method for interpreting complex data and detecting abnormal instrument or process behavior.
US5247175A (en) 1992-05-27 1993-09-21 Finnigan Corporation Method and apparatus for the deconvolution of unresolved data
US5440119A (en) 1992-06-02 1995-08-08 Labowsky; Michael J. Method for eliminating noise and artifact peaks in the deconvolution of multiply charged mass spectra
EP0596205A3 (en) 1992-11-03 1996-02-21 Hewlett Packard Co Bench supervisor system.
US5605798A (en) 1993-01-07 1997-02-25 Sequenom, Inc. DNA diagnostic based on mass spectrometry
ATE267877T1 (en) 1993-01-07 2004-06-15 Sequenom Inc DNA SEQUENCING THROUGH MASS SPECTRONOMY
EP0689610B1 (en) 1993-03-19 2002-07-03 Sequenom, Inc. Dna sequencing by mass spectrometry via exonuclease degradation
US5428357A (en) 1993-05-28 1995-06-27 Sensar Corporation High speed data acquisition system and method
US5363885A (en) 1993-06-02 1994-11-15 R. J. Reynolds Tobacco Company Robotic sample preparation system and method
US5538897A (en) 1994-03-14 1996-07-23 University Of Washington Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases
US5853979A (en) * 1995-06-30 1998-12-29 Visible Genetics Inc. Method and system for DNA sequence determination and mutation detection with reference to a standard
US5498545A (en) 1994-07-21 1996-03-12 Vestal; Marvin L. Mass spectrometer system and method for matrix-assisted laser desorption measurements
US5436447A (en) * 1994-07-28 1995-07-25 Waters Investments Limited Method and apparatus for determining relative ion abundances in mass spectrometry utilizing wavelet transforms
US5453613A (en) 1994-10-21 1995-09-26 Hewlett Packard Company Mass spectra interpretation system including spectra extraction
US6146854A (en) 1995-08-31 2000-11-14 Sequenom, Inc. Filtration processes, kits and devices for isolating plasmids
US5869242A (en) 1995-09-18 1999-02-09 Myriad Genetics, Inc. Mass spectrometry to assess DNA sequence polymorphisms
US5686656A (en) 1996-02-27 1997-11-11 Aviv Amirav Method and device for the introduction of a sample into a gas chromatograph
WO1997037041A2 (en) 1996-03-18 1997-10-09 Sequenom, Inc. Dna sequencing by mass spectrometry
US5928906A (en) 1996-05-09 1999-07-27 Sequenom, Inc. Process for direct sequencing during template amplification
US6022688A (en) 1996-05-13 2000-02-08 Sequenom, Inc. Method for dissociating biotin complexes
FR2749662B1 (en) 1996-06-11 1998-08-28 Elf Aquitaine ROBOTIZED LABORATORY OF SAMPLES ANALYSIS
US6060022A (en) 1996-07-05 2000-05-09 Beckman Coulter, Inc. Automated sample processing system including automatic centrifuge device
US5885841A (en) 1996-09-11 1999-03-23 Eli Lilly And Company System and methods for qualitatively and quantitatively comparing complex admixtures using single ion chromatograms derived from spectroscopic analysis of such admixtures
US5777324A (en) 1996-09-19 1998-07-07 Sequenom, Inc. Method and apparatus for maldi analysis
US5900481A (en) 1996-11-06 1999-05-04 Sequenom, Inc. Bead linkers for immobilizing nucleic acids to solid supports
CA2270132A1 (en) 1996-11-06 1998-05-14 Sequenom, Inc. Dna diagnostics based on mass spectrometry
US6133436A (en) 1996-11-06 2000-10-17 Sequenom, Inc. Beads bound to a solid support and to nucleic acids
US6140053A (en) 1996-11-06 2000-10-31 Sequenom, Inc. DNA sequencing by mass spectrometry via exonuclease degradation
DE19782097T1 (en) 1996-11-06 1999-10-14 Sequenom Inc Compositions and methods for immobilizing nucleic acids on solid supports
EP1460083B1 (en) 1996-11-06 2006-01-18 Sequenom, Inc. Analysing method and apparatus
US6024925A (en) 1997-01-23 2000-02-15 Sequenom, Inc. Systems and methods for preparing low volume analyte array elements
CA2284463A1 (en) 1997-02-04 1998-08-06 Hubert Koster A reversible stoichiometric process for conjugating biomolecules
US5985214A (en) 1997-05-16 1999-11-16 Aurora Biosciences Corporation Systems and methods for rapidly identifying useful chemicals in liquid samples
US5975492A (en) 1997-07-14 1999-11-02 Brenes; Arthur Bellows driver slot valve
US6207370B1 (en) 1997-09-02 2001-03-27 Sequenom, Inc. Diagnostics based on mass spectrometric detection of translated target polypeptides
US6112161A (en) 1997-09-17 2000-08-29 Hewlett-Packard Method, apparatus, and article of manufacture for enhanced intergration of signals
US5928952A (en) 1997-11-05 1999-07-27 Zymark Corporation Scheduled system and method for processing chemical products
US6268131B1 (en) 1997-12-15 2001-07-31 Sequenom, Inc. Mass spectrometric methods for sequencing nucleic acids
DE19803309C1 (en) 1998-01-29 1999-10-07 Bruker Daltonik Gmbh Position coordinate determination method for ion peak of mass spectrum
US5995989A (en) 1998-04-24 1999-11-30 Eg&G Instruments, Inc. Method and apparatus for compression and filtering of data associated with spectrometry
US6723564B2 (en) 1998-05-07 2004-04-20 Sequenom, Inc. IR MALDI mass spectrometry of nucleic acids using liquid matrices
US6094050A (en) 1998-07-14 2000-07-25 Hadasit Medical Research Services & Development Company Ltd. MRI imaging with noise filtering in wavelet space
US6132685A (en) 1998-08-10 2000-10-17 Caliper Technologies Corporation High throughput microfluidic systems and methods
US6440705B1 (en) * 1998-10-01 2002-08-27 Vincent P. Stanton, Jr. Method for analyzing polynucleotides
US6147344A (en) 1998-10-15 2000-11-14 Neogenesis, Inc Method for identifying compounds in a chemical mixture
US6270835B1 (en) 1999-10-07 2001-08-07 Microcoating Technologies, Inc. Formation of this film capacitors
US6225061B1 (en) 1999-03-10 2001-05-01 Sequenom, Inc. Systems and methods for performing reactions in an unsealed environment
US20020009394A1 (en) 1999-04-02 2002-01-24 Hubert Koster Automated process line
US6586728B1 (en) * 1999-05-13 2003-07-01 Ciphergen Biosystems, Inc. Variable width digital filter for time-of-flight mass spectrometry
JP2003519829A (en) 1999-10-13 2003-06-24 シークエノム・インコーポレーテツド Methods for creating a database and a database for identifying polymorphic genetic markers

Also Published As

Publication number Publication date
US7917301B1 (en) 2011-03-29
DE60131680D1 (en) 2008-01-10
ATE379815T1 (en) 2007-12-15
DE60131680T2 (en) 2008-04-30
CA2422700A1 (en) 2002-03-28
WO2002025567A3 (en) 2003-07-17
EP1350211A2 (en) 2003-10-08
WO2002025567A2 (en) 2002-03-28
EP1350211B1 (en) 2007-11-28

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