AU2001294867A1 - System and process for validating, aligning and reordering genetic sequence maps using ordered restriction map - Google Patents
System and process for validating, aligning and reordering genetic sequence maps using ordered restriction mapInfo
- Publication number
- AU2001294867A1 AU2001294867A1 AU2001294867A AU9486701A AU2001294867A1 AU 2001294867 A1 AU2001294867 A1 AU 2001294867A1 AU 2001294867 A AU2001294867 A AU 2001294867A AU 9486701 A AU9486701 A AU 9486701A AU 2001294867 A1 AU2001294867 A1 AU 2001294867A1
- Authority
- AU
- Australia
- Prior art keywords
- reordering
- validating
- aligning
- genetic sequence
- restriction map
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US23629600P | 2000-09-28 | 2000-09-28 | |
US60/236,296 | 2000-09-28 | ||
US29325401P | 2001-05-24 | 2001-05-24 | |
US60/293,254 | 2001-05-24 | ||
PCT/US2001/030426 WO2002026934A2 (en) | 2000-09-28 | 2001-09-28 | System and process for validating, aligning and reordering genetic sequence maps using ordered restriction map |
Publications (1)
Publication Number | Publication Date |
---|---|
AU2001294867A1 true AU2001294867A1 (en) | 2002-04-08 |
Family
ID=26929646
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
AU2001294867A Abandoned AU2001294867A1 (en) | 2000-09-28 | 2001-09-28 | System and process for validating, aligning and reordering genetic sequence maps using ordered restriction map |
Country Status (6)
Country | Link |
---|---|
US (1) | US7831392B2 (en) |
EP (3) | EP2320343A3 (en) |
JP (1) | JP5068414B2 (en) |
AU (1) | AU2001294867A1 (en) |
CA (1) | CA2424031C (en) |
WO (1) | WO2002026934A2 (en) |
Families Citing this family (29)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US7110525B1 (en) | 2001-06-25 | 2006-09-19 | Toby Heller | Agent training sensitive call routing system |
AU2003294391A1 (en) * | 2002-11-20 | 2004-06-15 | New York University | System, process and software for producing genome wide maps |
US9818136B1 (en) | 2003-02-05 | 2017-11-14 | Steven M. Hoffberg | System and method for determining contingent relevance |
US9390163B2 (en) * | 2005-04-22 | 2016-07-12 | New York University | Method, system and software arrangement for detecting or determining similarity regions between datasets |
EP2049262A2 (en) | 2006-07-19 | 2009-04-22 | Bionanomatrix, Inc. | Nanonozzle device arrays: their preparation and use for macromolecular analysis |
EP2604344A3 (en) | 2007-03-28 | 2014-07-16 | BioNano Genomics, Inc. | Methods of macromolecular analysis using nanochannel arrays |
EP2156179B1 (en) * | 2007-04-04 | 2021-08-18 | The Regents of The University of California | Methods for using a nanopore |
JP2010534474A (en) | 2007-07-26 | 2010-11-11 | パシフィック バイオサイエンシーズ オブ カリフォルニア, インコーポレイテッド | Molecular redundant sequencing |
EP2179285A4 (en) * | 2007-08-15 | 2010-08-18 | Opgen Inc | Method, system and software arrangement for comparative analysis and phylogeny with whole-genome optical maps |
US20090208950A1 (en) * | 2008-02-19 | 2009-08-20 | Opgen, Inc. | Methods of identifying an organism from a heterogeneous sample |
CA2723980A1 (en) * | 2008-05-14 | 2009-11-19 | Opgen, Inc. | Methods of determining properties of molecules |
CA3062190C (en) | 2008-06-30 | 2023-03-28 | Bionano Genomics, Inc. | Methods and devices for single-molecule whole genome analysis |
CA2744064C (en) | 2008-11-18 | 2021-09-14 | Bionanomatrix, Inc. | Polynucleotide mapping and sequencing |
WO2010075570A2 (en) * | 2008-12-24 | 2010-07-01 | New York University | Methods, computer-accessible medium, and systems for score-driven whole-genome shotgun sequence assemble |
US9605307B2 (en) | 2010-02-08 | 2017-03-28 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
WO2011137368A2 (en) | 2010-04-30 | 2011-11-03 | Life Technologies Corporation | Systems and methods for analyzing nucleic acid sequences |
US9268903B2 (en) | 2010-07-06 | 2016-02-23 | Life Technologies Corporation | Systems and methods for sequence data alignment quality assessment |
US20120183953A1 (en) * | 2011-01-14 | 2012-07-19 | Opgen, Inc. | Genome assembly |
US10289204B2 (en) | 2012-11-15 | 2019-05-14 | Quantum Interface, Llc | Apparatuses for controlling electrical devices and software programs and methods for making and using same |
US10503359B2 (en) | 2012-11-15 | 2019-12-10 | Quantum Interface, Llc | Selection attractive interfaces, systems and apparatuses including such interfaces, methods for making and using same |
US20140274750A1 (en) * | 2013-03-15 | 2014-09-18 | Opgen, Inc. | Sequence assembly using optical maps |
US10318523B2 (en) | 2014-02-06 | 2019-06-11 | The Johns Hopkins University | Apparatus and method for aligning token sequences with block permutations |
US9971492B2 (en) | 2014-06-04 | 2018-05-15 | Quantum Interface, Llc | Dynamic environment for object and attribute display and interaction |
US10788948B2 (en) | 2018-03-07 | 2020-09-29 | Quantum Interface, Llc | Systems, apparatuses, interfaces and implementing methods for displaying and manipulating temporal or sequential objects |
US11205075B2 (en) | 2018-01-10 | 2021-12-21 | Quantum Interface, Llc | Interfaces, systems and apparatuses for constructing 3D AR environment overlays, and methods for making and using same |
WO2016148650A1 (en) * | 2015-03-17 | 2016-09-22 | Agency For Science, Technology And Research | Bioinformatics data processing systems |
CN107229842A (en) * | 2017-06-02 | 2017-10-03 | 肖传乐 | A kind of three generations's sequencing sequence bearing calibration based on Local map |
CN107256335A (en) * | 2017-06-02 | 2017-10-17 | 肖传乐 | A kind of preferred three generations's sequencing sequence comparison method of being given a mark based on global seed |
CN111353046B (en) * | 2018-12-20 | 2023-05-26 | 杭州海康威视数字技术股份有限公司 | Map data storage method, device, electronic equipment and readable storage medium |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6174671B1 (en) | 1997-07-02 | 2001-01-16 | Wisconsin Alumni Res Found | Genomics via optical mapping ordered restriction maps |
-
2001
- 2001-09-28 EP EP10184566A patent/EP2320343A3/en not_active Withdrawn
- 2001-09-28 WO PCT/US2001/030426 patent/WO2002026934A2/en active Application Filing
- 2001-09-28 CA CA2424031A patent/CA2424031C/en not_active Expired - Lifetime
- 2001-09-28 US US10/432,766 patent/US7831392B2/en active Active
- 2001-09-28 JP JP2002530700A patent/JP5068414B2/en not_active Expired - Lifetime
- 2001-09-28 EP EP10184595A patent/EP2320229A3/en not_active Withdrawn
- 2001-09-28 EP EP01975549A patent/EP1328805A4/en not_active Ceased
- 2001-09-28 AU AU2001294867A patent/AU2001294867A1/en not_active Abandoned
Also Published As
Publication number | Publication date |
---|---|
JP5068414B2 (en) | 2012-11-07 |
JP2005512015A (en) | 2005-04-28 |
WO2002026934A9 (en) | 2003-03-27 |
EP2320343A3 (en) | 2011-06-22 |
WO2002026934A2 (en) | 2002-04-04 |
EP2320229A2 (en) | 2011-05-11 |
CA2424031A1 (en) | 2002-04-04 |
CA2424031C (en) | 2016-07-12 |
EP1328805A4 (en) | 2007-10-03 |
EP2320229A3 (en) | 2012-05-02 |
WO2002026934A3 (en) | 2002-06-13 |
EP1328805A2 (en) | 2003-07-23 |
EP2320343A2 (en) | 2011-05-11 |
US20060155483A1 (en) | 2006-07-13 |
US7831392B2 (en) | 2010-11-09 |
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