WO2025196155A1 - Pcsk9 inhibitors and methods of use thereof - Google Patents
Pcsk9 inhibitors and methods of use thereofInfo
- Publication number
- WO2025196155A1 WO2025196155A1 PCT/EP2025/057561 EP2025057561W WO2025196155A1 WO 2025196155 A1 WO2025196155 A1 WO 2025196155A1 EP 2025057561 W EP2025057561 W EP 2025057561W WO 2025196155 A1 WO2025196155 A1 WO 2025196155A1
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- Prior art keywords
- alkyl
- optionally substituted
- compound
- pharmaceutically acceptable
- halo
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P9/00—Drugs for disorders of the cardiovascular system
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D487/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
- C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
- C07D487/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
- C07D498/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D513/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
- C07D513/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
- C07D513/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
Definitions
- Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C 1-6 alkoxy, optionally substituted by C 1-6 alkyl amido, C 1-6 alkyl phosphonyl, or one or more halo groups; (vi) C 1-6 alkylamino (vii) C 1-6 thioalkyl, (viii) C 1-6 alkyl phosphinyl; and (ix) C 1-6 alkyl phosphonyl; R A8 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6
- the compounds may have an improved secondary pharmacology profile or an improved off-target profile.
- Substituents The phrase “optionally substituted” as used herein, pertains to a parent group which may be unsubstituted or which may be substituted. Unless otherwise specified, the term “substituted” as used herein, pertains to a parent group which bears one or more substituents.
- substituted is used herein in the conventional sense and refers to a chemical moiety which is covalently attached to, or if appropriate, fused to, a parent group.
- substituents are well known, and methods for their formation and introduction into a variety of parent groups are also well known. Examples of substituents are described in more detail below.
- C1-6 hydrocarbon The term “C1-6 hydrocarbon” as used herein pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 6 carbon atoms, which may be aliphatic or alicyclic, which may be saturated or unsaturated (e.g. partially unsaturated, fully unsaturated) and may also be branched.
- hydrocarbon includes the terms alkyl, alkenyl, alkynyl, cycloalkyl, etc., discussed below.
- C1-6 alkyl The term “C1-6 alkyl” as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 6 carbon atoms, which are saturated and may also be branched.
- C1-4 alkyl as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 4 carbon atoms, which are saturated.
- saturated alkyl groups include, but are not limited to, methyl (C 1 ), ethyl (C 2 ), propyl (C 3 ), butyl (C 4 ), pentyl (C 5 ) and hexyl (C 6 ).
- saturated linear alkyl groups include, but are not limited to, methyl (C 1 ), ethyl (C 2 ), n-propyl (C 3 ), n-butyl (C 4 ), n-pentyl (amyl) (C 5 ) and n-hexyl (C 6 ).
- saturated branched alkyl groups include isopropyl (C 3 ), iso-butyl (C 4 ), sec-butyl (C 4 ), tert-butyl (C 4 ), iso-pentyl (C 5 ), and neopentyl (C 5 ).
- C 2-6 Alkenyl The term “C 2-6 alkenyl” as used herein, pertains to a hydrocarbon group having one or more carbon-carbon double bonds.
- C2-6 alkynyl The term “C2-6 alkynyl” as used herein, pertains to a hydrocarbon group having one or more carbon-carbon triple bonds.
- Examples of unsaturated alkynyl groups include, but are not limited to, ethynyl (-C ⁇ CH) and 2- propynyl (propargyl, -CH2C ⁇ CH).
- C1-6 alkoxy The term C1-6 alkoxy as used herein, pertains to an OR group, wherein R is an C1-6 hydrocarbon group.
- C1-6 alkoxy groups include, but are not limited to, OMe, OEt (ethoxy), -O(nPr) (n-propoxy), -O(iPr) (iso-propoxy), O(nBu) (n-butoxy), O(sBu) (sec-butoxy), O(iBu) (iso-butoxy), and O(tBu) (tert-butoxy).
- Amino groups may be primary (-NH 2 ), secondary (-NHR 1 ), or tertiary (-NR 1 R 2 ), and in cationic form, may be quaternary (- + NR 1 R 2 R 3 ).
- amino groups include, but are not limited to NH 2 , NHCH 3 , NHCH(CH 3 ) 2 , N(CH 3 ) 2 , N(CH 2 CH 3 ) 2 , and NHPh.
- Examples of cyclic amino groups include, but are not limited to, aziridino, azetidino, pyrrolidino, piperidino, piperazino, morpholino, and thiomorpholino.
- R 1 and R 2 may together form a cyclic or bicyclic structure and form a cyclic acylamido group.
- C 1-6 thioalkyl The term C 1-6 thioalkyl as used herein, pertains to an SR, wherein R is a C 1-6 hydrocarbon group. Examples of C 1-6 alkylthio groups include, but are not limited to, SCH 3 and SCH 2 CH 3 .
- C3-12 cycloalkyl refers to an alkyl group which is also a cyclyl group; that is, a monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a cyclic hydrocarbon (carbocyclic) compound, which moiety has from 3 to 7 carbon atoms, including from 3 to 7 ring atoms.
- the carbocyclic ring may be saturated or unsaturated and may be bridged or unbridged.
- the ring may be a fused ring or a single ring.
- cycloalkyl groups include, but are not limited to, those derived from: saturated monocyclic hydrocarbon compounds: cyclopropane (C3), cyclobutane (C4), cyclopentane (C5), cyclohexane (C6), cycloheptane (C7), methylcyclopropane (C4), dimethylcyclopropane (C5), methylcyclobutane (C5), dimethylcyclobutane (C6), methylcyclopentane (C6), dimethylcyclopentane (C7) and methylcyclohexane (C7); unsaturated monocyclic hydrocarbon compounds: cyclopropene (C3), cyclobutene (C4), cyclopentene (C5), cyclohexene (C6), methylcyclopropene (C4), dimethylcyclopropene (C5), methylcyclobutene (C5), dimethylcyclobutene (C6), methyl
- C 3-10 heterocyclyl refers to a monovalent moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 3 to 10 ring atoms, of which from 1 to 5 are ring heteroatoms. In certain embodiments, each ring has from 3 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms.
- the ring may be saturated or unsaturated, and may be bridged or unbridged.
- the ring may be a fused ring or a single ring. For the avoidance of doubt, substituents on the heterocyclyl ring may be linked via either a carbon atom or a heteroatom.
- heteroatom means O, S, N, Si or B (Boron). More commonly in a pharmaceutical context, the term ‘heteroatom’ means O, S or N.
- prefixes e.g. C 3-10 C 3-7 , C 5-6 , etc.
- C 5-6 heterocyclyl as used herein, pertains to a heterocyclyl group having 5 or 6 ring atoms.
- Examples of monocyclic heterocyclyl groups include, but are not limited to, those derived from: N1: aziridine (C3), azetidine (C4), pyrrolidine (tetrahydropyrrole) (C5), pyrroline (e.g.2,5-dihydro- 1H-pyrrole) (C5), 2H-pyrrole or 3H-pyrrole, isoazole (C5), piperidine (C6), dihydropyridine (C6), tetrahydropyridine (C6), azepine (C7); O1: oxirane (C3), oxetane (C4), oxolane (tetrahydrofuran) (C5), oxole (dihydrofuran) (C5), oxane (tetrahydropyran) (C6), dihydropyran (C6), pyran (C6), oxepin (C7); S1: thiiran
- bicyclic heterocyclyl groups include, but are not limited to those derived from: Compound Structure Compound Structure 7-azabicyclo[4.2.0]octane 3-azabicyclo[3.1.0]hexane (N 1 ) C 8 (N 1 ) C 6 6-azabicyclo[3.2.0]heptane 2,3,3a,4,5,6,7,7a- (N1) C7 octahydrofuro[2,3- c]pyridine (N1O1) C9 C 6-10 carboaryl:
- the term “C 6-10 carboaryl”, as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 6 to 10 ring atoms and the ring atoms are all carbon atoms, as in “carboaryl groups”.
- the ring may be a fused ring or a single ring.
- carboaryl groups include, but are not limited to, those derived from benzene (i.e. phenyl) (C 6 ), naphthalene (C 10 ) and azulene (C 10 ).
- the prefixes e.g. C 5-7 , C 5-6 , C 5-10 , etc.
- C5-6 aryl as used herein, pertains to an aryl group having 5 or 6 ring atoms.
- carboaryl groups which comprise fused rings, at least one of which is an aromatic ring, include, but are not limited to, groups derived from indane (e.g.2,3-dihydro-1H-indene) (C9), indene (C9), isoindene (C9) and tetraline (1,2,3,4-tetrahydronaphthalene) (C10).
- C5-10 heteroaryl The term “C5-10 heteroaryl”, as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 5 to 10 ring atoms of which from 1 to 5 are ring heteroatoms.
- each ring has from 5 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms.
- substituents on the heteroaryl ring may be linked via either a carbon atom or a heteroatom.
- the ring may be a fused ring or a single ring.
- heteroatom means O, S, N, Si or B (Boron). More commonly in a pharmaceutical context, the term ‘heteroatom’ means O, S or N.
- Examples of monocyclic heteroaryl groups include, but are not limited to, those derived from: N 1 : pyrrole (azole) (C 5 ), pyridine (azine) (C 6 ); O 1 : furan (oxole) (C 5 ); S 1 : thiophene (thiole) (C 5 ); N 1 O 1 : oxazole (C 5 ), isoxazole (C 5 ), isoxazine (C 6 ); N 2 O 1 : oxadiazole (furazan) (C 5 ); N 3 O 1 : oxatriazole (C 5 ); N 1 S 1 : thiazole (C 5 ), isothiazole (C 5 ); N 2 : 1H-imidazole (1,3-diazole) (C 5 ), 1H-pyrazole (1,2-diazole) (C 5 ), pyridazine (1,2-diazine) (C 6
- heteroaryl which comprise fused rings
- heteroaryl or heterocyclic compounds include but are not limited to those derived from: Spiro C 6-12 carbocyclyl:
- Spiro C 6-12 carbocyclyl as used herein pertains to a moiety that has at least two molecular rings with only one common atom.
- the simplest spiro compounds are bicyclic (having just two rings), or have a bicyclic portion as part of the larger ring system, in either case with the two rings connected through the defining single common atom.
- Spiro C 6-12 carbocyclyl pertains to a cyclyl group; that is, a monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a cyclic hydrocarbon (carbocyclic) compound, which moiety has from 6 to 12 carbon atoms, including from 3 to 7 ring atoms wherein the rings share a common atom.
- Spiro C 6-12 heterocyclyl The term Spiro C 6-12 heterocyclyl as used herein pertains to a moiety that has at least two molecular rings with only one common atom.
- the simplest spiro compounds are bicyclic (having just two rings), or have a bicyclic portion as part of the larger ring system, in either case with the two rings connected through the defining single common atom.
- the spiro C 6-12 heterocyclyl moiety pertains to a monovalent moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 8 to 12 ring atoms of which from 1 to 3 are ring heteroatoms wherein the rings share a common atom.
- each ring has from 9 to 11 ring atoms, of which from 1 to 2 are ring heteroatoms.
- substituents on the heteroaryl ring may be linked via either a carbon atom or a heteroatom.
- the selected substituents may comprise the same substituents or different substituents from within the given group.
- Pharmaceutically acceptable salt The term “pharmaceutically acceptable” is used to specify that an object (for example a salt, dosage form or excipient) is suitable for use in patients. An example list of pharmaceutically acceptable salts can be found in the Handbook of Pharmaceutical Salts: Properties, Selection and Use, P. H. Stahl and C. G. Wermuth, editors, Weinheim/Zürich: Wiley-VCH/VHCA, 2002.
- a suitable pharmaceutically acceptable salt of a compound of Formula (I) is, for example, an acid addition salt.
- An acid addition salt of a compound of Formula (I) may be formed by bringing the compound into contact with a suitable inorganic or organic acid under conditions known to the skilled person.
- An acid addition salt may for example be formed using an inorganic acid selected from the group consisting of hydrochloric acid, hydrobromic acid, sulphuric acid and phosphoric acid.
- An acid addition salt may also be formed using an organic acid selected from the group consisting of trifluoroacetic acid, citric acid, maleic acid, oxalic acid, acetic acid, formic acid, benzoic acid, fumaric acid, succinic acid, tartaric acid, lactic acid, pyruvic acid, methanesulfonic acid, benzenesulfonic acid and para-toluenesulfonic acid.
- Another suitable pharmaceutically acceptable salt of a compound of Formula (I) is, for example, a base addition salt.
- a base addition salt of a compound of Formula (I) may be formed by bringing the compound into contact with a suitable inorganic or organic base under conditions known to the skilled person.
- a base addition salt may for example be formed using an inorganic base selected from the group consisting of lithium hydroxide, sodium hydroxide, potassium hydroxide, magnesium hydroxide and calcium hydroxide.
- a base addition salt may also be formed using an organic base selected from the group consisting of L-arginine, choline, L- lysine, t-butylamine, ethylenediamine, ammonia, dimethylaminoethanol, N-methylglucamine, tromethamine and hydroxyethylmorpholine.
- a compound of Formula (I) or a pharmaceutically acceptable salt thereof where the pharmaceutically acceptable salt is a hydrochloric acid, hydrobromic acid, sulphuric acid, phosphoric acid, trifluoroacetic acid, citric acid, maleic acid, oxalic acid, acetic acid, formic acid, benzoic acid, fumaric acid, succinic acid, tartaric acid, lactic acid, pyruvic acid, methanesulfonic acid, benzenesulfonic acid or para- toluenesulfonic acid salt.
- the pharmaceutically acceptable salt is a hydrochloric acid, hydrobromic acid, sulphuric acid, phosphoric acid, trifluoroacetic acid, citric acid, maleic acid, oxalic acid, acetic acid, formic acid, benzoic acid, fumaric acid, succinic acid, tartaric acid, lactic acid, pyruvic acid, methanesulfonic acid, benzenesulf
- a compound of Formula (I) or a pharmaceutically acceptable salt thereof where the pharmaceutically acceptable salt is a lithium salt, sodium salt, potassium salt, magnesium salt, calcium salt, L-arginine salt, choline salt, L-lysine salt, t-butylamine salt, ethylenediamine salt, ammonia salt, dimethylaminoethanol salt, N-methylglucamine salt, tromethamine salt or hydroxyethylmorpholine salt.
- the pharmaceutically acceptable salt is a lithium salt, sodium salt, potassium salt, magnesium salt, calcium salt, L-arginine salt, choline salt, L-lysine salt, t-butylamine salt, ethylenediamine salt, ammonia salt, dimethylaminoethanol salt, N-methylglucamine salt, tromethamine salt or hydroxyethylmorpholine salt.
- Other forms Compounds and salts described in this specification may exist in solvated forms and unsolvated forms.
- a solvated form may be a hydrated form, such as a hemihydrate, a monohydrate, a dihydrate, a trihydrate or an alternative quantity thereof.
- the compounds of Formula (I) encompass all such solvated and unsolvated forms of compounds of Formula (I), particularly to the extent that such forms possess PCSK9 inhibitory activity, as for example measured using the tests described herein.
- Compounds and salts described in this specification include one or more chiral (i.e. asymmetric) centres. To the extent a structure or chemical name in this specification does not indicate the chirality, the structure or name is intended to encompass any single stereoisomer (i.e.
- any single chiral isomer corresponding to that structure or name, as well as any mixture of stereoisomers (e.g. a racemate).
- a single stereoisomer is obtained by isolating it from a mixture of isomers (e.g. a racemate) using, for example, chiral chromatographic separation.
- a single stereoisomer is obtained through direct synthesis from, for example, a chiral starting material.
- a particular enantiomer of a compound described herein may be more active than other enantiomers of the same compound.
- a compound of Formula (I), or a pharmaceutically acceptable salt thereof which is a single enantiomer being in an enantiomeric excess (%ee) of ⁇ 95, ⁇ 98% or ⁇ 99%.
- the single enantiomer is present in an enantiomeric excess (%ee) of ⁇ 99%.
- a pharmaceutical composition which comprises a compound of Formula (I), which is a single enantiomer being in an enantiomeric excess (%ee) of ⁇ 95, ⁇ 98% or ⁇ 99% or a pharmaceutically acceptable salt thereof, in association with one or more pharmaceutically acceptable excipients.
- the single enantiomer is present in an enantiomeric excess (%ee) of ⁇ 99%.
- Isotopes Atoms of the compounds and salts described in this specification may exist as their isotopes.
- the compound of Formula (I) encompasses all compounds of Formula (I) where an atom is replaced by one or more of its isotopes (for example a compound of Formula (I) where one or more carbon atom is an 11 C or 13 C carbon isotope, or where one or more hydrogen atoms is a 2 H or 3 H isotope).
- Tautomers Compounds and salts described in this specification may exist as a mixture of tautomers.
- “Tautomers” are structural isomers that exist in equilibrium resulting from the migration of a hydrogen atom.
- the compound of Formula (I) includes all tautomers of compounds of Formula (I) particularly to the extent that such tautomers possess PCSK9 inhibitory activity.
- Therapy, prophylaxis and related terms The term “therapy” is intended to have its normal meaning of dealing with a disease in order to entirely or partially relieve one, some or all of its symptoms, or to correct or compensate for the underlying pathology.
- the term “therapy” also includes “prophylaxis” unless there are specific indications to the contrary.
- the terms “therapeutic” and “therapeutically” should be interpreted in a corresponding manner.
- prophylaxis is intended to have its normal meaning and includes primary prophylaxis to prevent the development of the disease and secondary prophylaxis whereby the disease has already developed and the patient is temporarily or permanently protected against exacerbation or worsening of the disease or the development of new symptoms associated with the disease.
- treatment is used synonymously with “therapy”.
- treat can be regarded as “applying therapy” where “therapy” is as defined herein.
- subject to which administration is contemplated includes, but is not limited to, humans (i.e., a male or female of any age group, e.g., a paediatric subject (e.g., infant, child, adolescent) or adult subject (e.g., young adult, middle-aged adult or senior adult)) and/or other primates (e.g., cynomolgus monkeys, rhesus monkeys); mammals, including commercially relevant mammals such as cattle, pigs, horses, sheep, goats, cats, and/or dogs; and/or birds, including commercially relevant birds such as chickens, ducks, geese, quail, and/or turkeys.
- Preferred subjects are humans.
- an “effective amount”, as used herein, refers to an amount that is sufficient to achieve a desired biological effect.
- a “therapeutically effective amount”, as used herein refers to an amount that is sufficient to achieve a desired therapeutic effect.
- a therapeutically effective amount can refer to an amount that is sufficient to improve at least one sign or symptom of the disease to be treated.
- Pharmaceutical compositions comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- excipient(s) selected for inclusion in a particular composition will depend on factors such as the mode of administration and the form of the composition provided. Suitable pharmaceutically acceptable excipients are well known to persons skilled in the art and are described, for example, in the Handbook of Pharmaceutical Excipients, Sixth edition, Pharmaceutical Press, edited by Rowe, Ray C; Sheskey, Paul J; Quinn, Marian. Pharmaceutically acceptable excipients may function as, for example, adjuvants, diluents, carriers, stabilisers, flavourings, colorants, fillers, binders, disintegrants, lubricants, glidants, thickening agents and coating agents.
- compositions described herein comprise compounds of Formula (I), or a pharmaceutically acceptable salt thereof, and are therefore expected to be useful in therapy.
- a pharmaceutical composition for use in therapy comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- a pharmaceutical composition for use in the treatment of a disease in which inhibition of PCSK9 is beneficial comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- a pharmaceutical composition for use in the treatment of a cardiovascular disease comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- a pharmaceutical composition for use in the treatment of a cardiovascular disease in which inhibition of PCSK9 is beneficial comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- a pharmaceutical composition for use in the treatment of a cardiovascular disease in which inhibition of PCSK9 is beneficial comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
- the compounds described herein may be used in a method of therapy.
- a method of treatment comprising administering to a subject in need of treatment a therapeutically effective amount of a compound of Formula (I).
- therapeutically effective amount is an amount sufficient to show benefit to a patient. Such benefit may be at least amelioration of at least one symptom.
- the actual amount administered, and rate and time- course of administration, will depend on the nature and severity of what is being treated. Prescription of treatment, e.g.
- the PCSK9 gene was identified using genetic mapping techniques on DNA from subjects with autosomal dominant hypercholesterolemia (Abifadel 2003).
- the encoded protein is a serine protease that is mostly expressed in the liver, gut, kidney, and nervous system and circulates in plasma. While not wishing to be bound by any particular theory, studies on mutations in the gene indicated that its putative role was in reducing LDLR at the cell surface independently of its catalytic activity (Abifadel 2010). Binding of PCSK9 to the LDLR results in their lysosomal degradation. This enhanced LDLR degradation results in increases in the amount of circulating low-density lipoprotein (LDL).
- LDL low-density lipoprotein
- PCSK9 is upregulated by statins, SREBP-1a and SREBP-2, LXR agonist, and insulin, but downregulated by dietary cholesterol, glucagon, ethinylestradiol, chenodeoxycholic acid and the bile acid-activated farnesoid X receptor (FXR) (Maxwell 2003; Persson 2009; Langhi 2008). Since an elevated level of PCSK9 decreases the abundance of LDLR on the cell surface, increasing doses of statins fail to achieve proportional LDL-C lowering results. Thus, disclosed herein are methods for treating a wide range of cardiovascular diseases and conditions that benefit from inhibiting PCSK9 thereby lowering LDL-C.
- a method of treating a cardiovascular disease comprising administering to a subject a compound of Formula (I), or a pharmaceutical composition comprising a compound of Formula (I).
- a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for use in the treatment of a cardiovascular disease comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for the manufacture of a medicament for the treatment of a cardiovascular disease.
- the disease is hypercholesterolemia, such as familial hypercholesterolemia or autosomal dominant hypercholesterolemia.
- the disease is hyperlipidemia.
- the disease is coronary artery disease.
- the disclosed methods of treatment can decrease high levels of circulating serum cholesterol, such as LDL-C and VLDL-Cholesterol.
- the disclosed methods are useful for decreasing circulating serum triglycerides, circulating serum lipoprotein A, circulating serum LDL-C and atherogenic lipoproteins.
- the diseases or conditions treated with the disclosed compounds and compositions include atherosclerosis and atherosclerotic plaque formation.
- Subjects having a gain-of-function mutation in the PCSK9 gene also benefit with treatment with the disclosed compounds and compositions counteracting the mutation through their inhibition of PCSK9.
- a method of treating a kidney disease comprising administering to a subject a compound of Formula (I), or a pharmaceutical composition comprising a compound of Formula (I).
- a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for the manufacture of a medicament for the treatment of a kidney disease are examples of the manufacture of a medicament for the treatment of a kidney disease.
- the kidney disease is a chronic kidney disease.
- Combination treatments Disclosed compounds and compositions may be conjointly administered with other therapeutic agents, such as other agents suitable for the treatment of high levels of LDL-C and triglycerides.
- conjointly administering one or more additional therapeutic agents with a compound described herein provides a synergistic effect.
- conjointly administering one or more additional therapeutic agents provides an additive effect.
- the amount of the compound or salt described in this specification and the amount of the other pharmaceutically active agent(s) are, when combined, therapeutically effective to treat a targeted disorder in the animal patient.
- the combined amounts are “therapeutically effective amounts” if they are, when combined, sufficient to reduce or completely alleviate symptoms or other detrimental effects of the disorder; cure the disorder; reverse, completely stop, or slow the progress of the disorder; or reduce the risk of the disorder getting worse.
- amounts may be determined by one skilled in the art by, for example, starting with the dosage range described in this specification for the compound or salt and an approved or otherwise published dosage range(s) of the other pharmaceutically active compound(s).
- a pharmaceutical composition of the specification may comprise one or more further active ingredients, as appropriate, examples of combinations of a compound of the specification (or a pharmaceutically acceptable salt thereof) and one or more additional active ingredients are described herein.
- the specification further relates to a combination therapy wherein a compound of the specification, or a pharmaceutically acceptable salt thereof, and a second active ingredient are administered concurrently, sequentially or in admixture, for the treatment of one or more of the conditions listed above.
- a combination may be used in combination with one or more further active ingredients.
- a combination for example, for use as a medicament for the treatment of one of the diseases or conditions listed herein, such as a cardiovascular disease
- a combination comprising a compound of the specification, or a pharmaceutically acceptable salt thereof, and at least one active ingredient selected from: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) an ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs.
- a pharmaceutical composition for example, for use as a medicament for the treatment of one of the diseases or conditions listed herein, such as a cardiovascular disease
- a pharmaceutical composition comprising a compound of the specification, or a pharmaceutically acceptable salt thereof, and at least one active ingredient selected from: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) an ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs.
- the statin is Rosuvastatin (Crestor).
- a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from a SGLT2 inhibitor wherein the SGLT2 inhibitor is selected from Canagliflozin, Dapagliflozin, Empagliflozin, Ertugliflozin, Ipragliflozin, Luseogliflozin, Remogliflozin etabonate, Sergliflozin etabonate, Sotagliflozin or Tofogliflozin.
- the SGLT2 inhibitor is selected from Dapagliflozin (Farxiga or Forxiga).
- the additional active ingredient is Ezetimibe, Rosuvastatin, Dapagliflozin or Ticagrelor.
- the additional two active ingredients are Ezetimibe and Rosuvastatin or Dapagliflozin and Rosuvastatin.
- the antihypertensive drug is selected from Valsartan (Diovan), Metoprolol (Lopressor), HCTZ (Hydrochlorothiazide), Olmesartan (Benicar), Lisinopril (Prinivil, Zestril), Amlodipine besylate (Norvasc), Candesartan, or a calcium channel blocker or a combination thereof.
- US5273995 discloses certain 6-[2-(substituted-pyrrol-1-yl)alkyl]pyran-2-ones such as atorvastatin and any pharmaceutically acceptable form thereof (i.e. LIPITOR®).
- Atorvastatin calcium i.e., atorvastatin hemicalcium
- US RE37,314 E discloses rosuvastatin and rosuvastatin calcium.
- EP0304063 and US5011930 disclose pitivastatin.
- US3983140 discloses mevastatin.
- US4448784 and US4450171 disclose velostatin.
- US4804770 discloses compactin.
- EP0738510A2 discloses dalvastatin.
- EP0363934A1 discloses fluindostatin.
- US4450171 discloses dihydrocompactin.
- the statin is selected from atorvastatin, rosuvastatin, lovastatin, pravastatin, simvastatin and fluvastatin; and pharmaceutically acceptable salts thereof.
- the statin is rosuvastatin or a pharmaceutically acceptable salt thereof.
- the statin is rosuvastatin or rosuvastatin calcium.
- the statin dosing regimen is a moderate-intensity dosing according to the ACC (American College of Cardiology)/AHA (American Heart Association) (Grundy 2018).
- This moderate-intensity dosing may be: Dosing regimen A torvastatin 10 to 20 mg once daily Fluvastatin 40 mg twice daily; or 80 mg once daily Lovastatin 40 to 80 mg once daily Pitavastatin 1 to 4 mg once daily Pravastatin 40 to 80 mg once daily Rosuvastatin 5 to 10 mg once daily Simvastatin 20 to 40 mg once daily
- the rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form.
- the atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form.
- the pravastatin may be dosed as pravastatin calcium, where the dose given is calculated as pravastatin in its free form.
- the pitavastatin may be dosed as pitavastatin calcium, where the dose given is calculated as pitavastatin in its free form.
- the statin dosing regimen is a high-intensity dosing according to the ACC (American College of Cardiology)/AHA (American Heart Association) (Grundy 2018).
- This high-intensity dosing may be: Dosing regimen A torvastatin 40 to 80 mg once daily Rosuvastatin 20 to 40 mg once daily
- the rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form.
- the atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form.
- the statin dosing regimen is one appropriate to patients from, for example, Japan: Dosing regimen A torvastatin 10 to 40 mg once daily Fluvastatin 60 mg once daily Pitavastatin 1 to 4 mg once daily Rosuvastatin 2.5 to 20 mg once daily Simvastatin 10 to 20 mg once daily
- the rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form.
- the atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form.
- the pitavastatin may be dosed as pitavastatin calcium, where the dose given is calculated as pitavastatin in its free form.
- Ezetimibe refers to a compound with the chemical name (3R,4S)-1-(4-fluorophenyl)-3-[(3S)-3- (4-fluorophenyl)-3-hydroxypropyl]-4-(4-hydroxyphenyl)azetidin-2-one and the structure shown below: Ezetimibe inhibits the absorption of cholesterol from the small intestine and decreases the amount of cholesterol normally available to liver cells. The lower levels of cholesterol in the liver cells leads them to absorb more cholesterol from circulation and thus lowering the levels of circulating cholesterol.
- ezetimibe reduces plasma LDL-C levels by up to 20% when used alone, and that it lowered plasma levels of lipoprotein(a) by about 7%.
- ezetimibe is administered in a dose of 5 to 15 mg per day. The daily dose may be up to 10 mg, 11 mg, 12 mg, 13 mg, 14 mg or 15 mg.
- the daily dose may be at least 5 mg, 6 mg, 7 mg, 8 mg, 9 mg, or 10 mg.
- ezetimibe is administered in a dose of 10 mg per day.
- ezetimibe is administered as a free base, i.e. not in salt form.
- ezetimibe is administered as a pharmaceutically acceptable salt thereof, where the dosage is that of ezetimibe not in a salt form.
- any reference in this disclosure to an amount of ezetimibe, or pharmaceutically acceptable salt thereof is based on the ezetimibe free base equivalent weight.
- “wt%” refers to weight % based on ezetimibe free base equivalent weight.
- Bempedoic acid refers to a compound also known as 8-hydroxy-2,2,14,14- tetramethylpentadecanedioic acid and the structure shown below: . Bempedoic acid targets the cholesterol biosynthesis pathway in the liver. Bempedoic acid inhibits ATP-citrate lyase (ACL), two steps upstream of HMG CoA reductase.
- ACL ATP-citrate lyase
- Bempedoic acid is converted to active coenzyme A form by enzymes found only in the liver and not in muscles (Agarwala and Goldberg 2020) Bempedoic acid has been approved for use in combination with a statin or statin with other lipid- lowering therapies in patients unable to reach LDL-C goals with the maximum tolerated dose of a statin or, alone or in combination with other lipid-lowering therapies in patients who are statin intolerant, or for whom a statin is contraindicated.
- bempedoic acid is administered in a dose of 150 to 200 mg per day.
- the daily dose may be up to 180 mg, 185 mg, 190 mg, 195 mg, or 200 mg.
- the daily dose may be at least 150 mg, 155 mg, 160 mg, 165 mg, 170 mg, 175 mg or 180 mg.
- bempedoic acid is administered in a dose of 180 mg per day.
- bempedoic acid is administered as a free acid, i.e. not in salt form.
- bempedoic acid is administered as a pharmaceutically acceptable salt thereof, where the dosage is that of bempedoic acid not in a salt form.
- any reference in this disclosure to an amount of bempedoic acid, or pharmaceutically acceptable salt thereof is based on the bempedoic acid free acid equivalent weight.
- “wt%” refers to weight % based on bempedoic acid free acid equivalent weight.
- A is (A1a).
- X 1 is N.
- X 1 is C-R A3 .
- A is of formula (A1); .
- R A1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH.
- R A1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; and (v) C 1-6 alkoxy, optionally substituted by OH, halo or C 1-6 alkyl amido.
- R A1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by one or more OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C 1-6 alkoxy, optionally substituted by OH, one or more halo groups or C 1-6 alkyl amido; and (vi) OH.
- R A1 is an optionally substituted C 1-6 hydrocarbon it is an optionally substituted C 1-6 alkyl. In some embodiments it is optionally substituted methyl or optionally substituted ethyl.
- R A1 is optionally substituted methyl. In further embodiments, it is unsubstituted methyl.
- R A1 is optionally substituted C 1-6 alkyl
- the optional substituents are selected from OH, CN, and one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br.
- R A1 is optionally substituted C 1-6 alkoxy, in some embodiments it is optionally substituted OMe or ethoxy. In some embodiments R A1 is unsubstituted OMe.
- R A1 is optionally substituted C 1-6 alkoxy
- the optional substituents are selected from C 1-6 alkyl amido and one or more halo groups.
- the optional substituents are selected from one, two or three F atoms.
- R A1 is halo, in some embodiments it is F, Br or Cl. In other embodiments it is Br or Cl.
- R A1 is H.
- R A1 is OH.
- R A1 is CN.
- R A1 is methyl.
- R A1 is -OCF2H.
- R A1 is selected from H, Br, Cl, CN, OMe, ethoxy, methyl and ethyl.
- R A1 is selected from H, -OCF2H, Br and Cl.
- R A1 is selected from H, Br and Cl.
- R A1 is H or -OCF2H. In some embodiments R A1 is selected from the group consisting of H, OH, Br, Cl, CN, -OCF2H, OMe, ethoxy, methyl and ethyl. In some embodiments R A1 is selected from the group consisting of H, Br, Cl, CN, -OCF2H, OMe, ethoxy, methyl and ethyl. In some embodiments R A1 is selected from the group consisting of H, OH, -OCF2H, Br and Cl. In some embodiments R A1 is selected from the group consisting of H, -OCF2H, Br and Cl. In some embodiments R A1 is H.
- R A1 is OH or H.
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C 1-6 alkoxy, optionally substituted by OH, alkyl amido, or one or more halo groups; (vi) C 1-6 acylamido (where acyl substituent is H or Me); (vii) C 1-6 thioalkyl, (viii) C 1-6 alkyl ester; (ix) C 1-6 alkyl acyl, (x) C 4-5 heterocyclyl; (xi) C 5 heteroaryl; (xii) C 1-6 alkyl amido optionally substituted by C 1-3 alkyl amido, CN, OH, C 2-3 alkynyl
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (where acyl substituent is H or Me); (vii) C1-6 thioalkyl, (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl, (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl which alkyl is optionally substituted with one or more halo
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 acyl, C1-6 alkoxy or one or more halo groups; (v) OH; (vi) C 1-6 alkoxy, optionally substituted by OH, C 1-6 alkyl amido, or one or more halo groups; (vii) C 1-6 alkyl ester; (viii) C 1-6 alkyl acyl; (ix) C 1-6 alkyl amido optionally substituted by C 1-3 alkyl amido, CN, C 2-3 alkynyl, C 4-6 heterocyclyl, or C 1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; and (x) C 1-6 alkylamino In further embodiments R A2 is selected from the group consisting of: (i) H; (ii)
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 thioalkyl; (viii) C1-6 alkyl ester; and (ix) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups.
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-6 alkyl ester; (iv) C 1-6 hydrocarbon; (v) C 1-6 alkyl amido optionally substituted by C 1-3 alkyl amido, C 2-3 alkynyl, C 4-6 heterocyclyl, or C 1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; (vi) C 1-6 thioalkyl; (vii)C 1-6 alkyl acyl; (viii) C 5 heteroaryl; and (ix) C 1-6 alkylamino.
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) C 1-3 alkyl, optionally substituted by OH, or one or more halo groups; (v) C 1-3 alkoxy, optionally substituted by OH, or one or more halo groups; and (vi) cyclopropyl.
- R A2 is halo, in some embodiments it is Br or Cl. In further embodiments it is Cl.
- R A2 is selected from CF 3 , CN, Cl, OMe, methyl, cyclopropyl, -OCHF 2 , - OCF 3 and optionally substituted C 1-6 alkylamido.
- R A2 is selected from CN, Cl, OMe, methyl, cyclopropyl, -OCHF2, -OCF3 and optionally substituted C1-6 alkylamido.
- R A2 is an optionally substituted C 1-6 hydrocarbon it is an optionally substituted C 1-6 alkyl. In some embodiments it is optionally substituted methyl, optionally substituted ethyl or optionally substituted cyclopropyl. In further embodiments, it is optionally substituted methyl. In further embodiments, it is unsubstituted methyl. In other embodiments it is unsubstituted cyclopropyl.
- R A2 is optionally substituted C 1-6 alkyl
- the optional substituents are selected from OH, CN, or one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br.
- R A2 is optionally substituted C 1-6 alkoxy, in some embodiments it is optionally substituted OMe or ethoxy.
- R A2 is optionally substituted C 1-6 alkoxy, in some embodiments the optional substituents are selected from alkyl amido and one or more halo groups. In another embodiment the optional substituents are selected from one or more F. In another embodiment where R A2 is optionally substituted C1-6 alkoxy it is difluoromethoxy (-OCHF2).
- R A2 is C1-6 alkyl amido, in some embodiments the optional substituents are selected from one or more methyl groups, an oxetane ring, a C2 alkylamido and ethyl which ethyl is optionally substituted by OH or one or more halo groups.
- R A2 is C1-6 alkyl amido, in some embodiments the optional substituent is OH.
- R A2 is C1-6 alkylamino in some embodiments it is NHCH3, NHCH(CH3)2, N(CH2CH3)2, or N(CH3)2.
- These groups are as shown in the table below:
- R A2 is selected from the following groups: In some embodiments R A2 is selected from the following groups: In some embodiments R A2 is selected from the following groups: In some embodiments R A2 is selected from the following groups: In some embodiments R A2 is selected from the following groups: In some embodiments RA2 is selected from halo, C1-6 hydrocarbon and C1-6 alkoxy optionally substituted by one or more halo. In some embodiments RA2 is selected from chloro, bromo, C1-6alkyl and C1-6 alkoxy optionally substituted by one, two or three halo. In some embodiments R A2 is selected from H, chloro, methyl, OCF 2 H, CF 3 and cyclopropyl.
- R A2 is selected from chloro, methyl, OCF 2 H, and CF 3 . In some embodiments, R A2 is selected from methyl, CF 3 and OCF 2 H. In some embodiments, R A2 is selected from OCF2H and methyl. In some embodiments R A2 is selected from chloro, methyl and OCF2H. In some embodiments R A2 is selected from chloro and OCF2H.
- R A3 is halo, in some embodiments it is Br or Cl. In some embodiments it is Cl. In further embodiments R A3 is Br. Where R A3 is an optionally substituted C 1-6 hydrocarbon it is an optionally substituted C 1-6 alkyl. In some embodiments it is optionally substituted methyl or optionally substituted ethyl. In further embodiments, it is optionally substituted methyl. In further embodiments, it is unsubstituted methyl. When R A3 is optionally substituted C 1-6 alkyl, in some embodiments the optionally substituents are selected from OH, CN, and one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br.
- R A3 is OH.
- R A3 is optionally substituted C1-6 alkoxy, in some embodiments it is optionally substituted OMe or ethoxy. In further embodiments it is OMe.
- R A3 is optionally substituted C1-6 alkoxy, in some embodiments the optional substituents are selected from alkyl amido or one or more halo groups. In another embodiment the optional substituents are selected from one or more F.
- R A3 is selected from H, CF3, CN, C1-2 alkyl, NH2 and halo. In other embodiments R A3 is selected from H, methyl, CN and Cl.
- R A3 is selected from H, OMe, CF3, CN, C1-2 alkyl, NH2 and halo. In some embodiments, R A3 is selected from the group consisting of H, methyl and OH. In some embodiments R A3 is CN. In some embodiments R A3 is H. In some embodiments R A3 is methyl. In some embodiments R A3 is OMe. In some embodiments R A3 is selected from methyl, H and CN. In some embodiments R A3 is selected from H, methyl and OH.
- R A2 and R A3 When R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C 6 carboaromatic ring or C 5-7 heteroaromatic ring they form an optionally substituted benzene ring or an optionally substituted pyridine ring.
- the optional substituents are selected from NH 2 , C 1-6 alkyl, C 1-6 alkoxy and halo. In other embodiments the optional substituents are selected from methyl, ethyl, OMe, NH 2 , F, Cl and Br.
- the optional substituents are selected from methyl, NH 2 , Cl, F and OMe. In other embodiments the optional substituent is methyl. In one embodiment when R A2 and R A3 together with the carbon atoms to which they are bound form an optionally substituted C 5-7 heteroaromatic ring, they form an optionally substituted pyridine. In some embodiments the optional substituent is NH2. In another embodiment R A2 and R A3 together with the carbon atoms to which they are bound form an unsubstituted pyridine. In another embodiment R A2 and R A3 together form an optionally substituted pyrazole, an optionally substituted pyrrole or an optionally substituted thiazole. In some embodiments the optional substituent is methyl.
- R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heteroaromatic ring the optional substituents are selected from C1-6 alkyl, C1-6 alkoxy, NH2 and halo. In other embodiments the optional substituents are selected from methyl, ethyl, OMe, ethoxy, NH2 and halo. In other embodiments the optional substituents are selected from NH2 and methyl.
- R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heterocycle ring they form a 5 membered ring which comprises one or two atoms selected from N, O and S.
- the 5 membered ring contains one N and one S. In other embodiments the 5 membered ring contains one N. In other embodiments the 5 membered ring contains one N and one O. In other embodiments the 5 membered ring contains two Ns.
- R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted pyrrole or pyrazole. When R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C 5-7 heterocycle ring, the optional substituents are selected from NH 2 , C 1-6 alkyl, C 1-6 alkoxy and halo.
- the optional substituents are selected from methyl, ethyl, OMe, ethoxy, NH 2 , F, Cl and Br. In other embodiments the optional substituent is methyl.
- R A2 and R A3 together with the carbon atoms to which they are bound form: (i) optionally substituted C 6 heteroaromatic ring; wherein the optional substituent is NH 2 ; (ii) optionally substituted C 6 carboaromatic ring; wherein the optional substituent is F, OMe, Cl; (iii) optionally substituted C 5 heteroaromatic or C 5 heterocycle ring wherein the optional substituent is methyl.
- R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C 6 carboaromatic ring or C 5-7 heteroaromatic ring wherein the optional substituents are selected from C 1-6 alkyl, and halo.
- R A2 and R A3 together form an unsubstituted 2-pyrazole, a 2-pyrrole substituted by methyl, pyridine optionally substituted by NH 2 , or a phenyl optionally substituted by Cl, F or OMe.
- R A2 and R A3 together form a ring selected from: , In some embodiments, A is selected from one of the following formulae: In some embodiments, A is selected from one of the following formulae: , . In some embodiments, A1a is selected from one of the following formulae: In some embodiments A is selected from one of the following formulae: In some embodiments A is selected from one of the following formulae: In some embodiments A is selected from one of the following formulae: . In some embodiments A is selected from one of the following formulae: . In some embodiments A is selected from one of the following formulae: . In some embodiments A is selected from one of the following formulae: . (A2a) In some embodiments, A is (A2a). wherein the wavy line indicates the point of attachment to B.
- Z 1 is selected from O or S. In some embodiments, Z 1 is O. In some embodiments, Z 1 is S.
- R A5 R A5 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups; and (v) C 1 alkoxy, optionally substituted by one or more halo groups; In some embodiments, R A5 is selected from H, halo, CN, or methyl optionally substituted by one or more OH groups or one or more halo groups. In some embodiments, R A5 is H.
- R A6 R A6 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl; (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; In some embodiments R A6 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-6 alkyl, optionally substituted by one or more OH or one or more halo groups; (iv) C1-6 alkoxy, optionally substituted by one or
- R A6 is selected from the group consisting of: (i) H; (ii) halo; (iii) C 1-3 alkyl, optionally substituted by one or more OH or one or more halo groups; and (iv) C 1-3 alkoxy, optionally substituted by one or more halo groups. In some embodiments, R A6 is H.
- A is selected from one of the following formulae: , wherein the wavy line indicates the point of attachment to B and wherein R A5 , R A6 and R A7 are as defined in any other embodiment herein. In some embodiments, A is selected from one of the following formulae: , wherein the wavy line indicates the point of attachment to B. In some embodiments, A is of the formula A2a7: In some embodiments, A is selected from one of formula A2a1, A2a3, and A2a5. In some embodiments, A2a is formula A2a5. (A2b) In some embodiments, A is A2b: Z 6 In some embodiments Z 6 is N. In some embodiments Z 6 is CH.
- Z 7 In some embodiments Z 7 is N. In some embodiments Z 7 is C-R A8 . Z 6 and Z 7 In some embodiments, Z 6 is C-H, and Z 7 is C-R A8 . In some of these embodiments, R A8 is H. In some embodiments, Z 6 is N and Z 7 is C-H.
- Z 8 and Z 9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl.
- Z 8 and Z 9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl, and (viii) C1-6 alkyl phosphinyl.
- Z 8 and Z 9 are independently selected from: (i) H; (ii) halo; (iii) C 1-6 alkyl, optionally substituted by one or more OH or one or more halo groups; (iv) C 1-6 alkoxy, optionally substituted by one or more halo groups; (v) C 3-5 cycloalkyl; (vi) C 1-6 thioalkyl; and (vii) C 1-6 alkyl phosphinyl.
- Z 8 and Z 9 are H.
- Z 6 and Z 7 are C-H
- Z 8 and Z 9 are H. In some embodiments when one or both of Z 8 and Z 9 are halo it is F, Cl or Br.
- Z 8 and Z 9 when one or both of Z 8 and Z 9 are optionally substituted C 1-6 alkyl it is a methyl, ethyl, propyl, CH 2 OH, CH 2 F, CHF 2 , CF 3 . In further embodiments it is methyl, ethyl, CH 2 OH or CF 3. In some embodiments when one or both of Z 8 and Z 9 are an optionally substituted C 1-6 alkoxy it is OMe, O-ethyl, O-propyl, OCF2H, OCF3, OCFH2. In further embodiments it is OMe, OCF3, OCF2H.
- R A8 is selected from: (i) H; (ii) halo (iii) CN; (iv) C 1-6 alkyl optionally substituted by OH, or one or more halo groups; (v) C 2-6 alkenyl optionally substituted by OH, or one or more halo groups; (vi) C 2-6 alkynyl optionally substituted by OH, or one or more halo groups; and (vii) C 1-6 alkoxy, optionally substituted by one or more halo groups.
- R A8 is H.
- R A8 is CN.
- R A8 when R A8 is halo it is selected from Cl, Br and F.
- R A8 when R A8 is an optionally substituted C 1-6 alkyl it is methyl, ethyl, propyl, CF3, CF2H, CH2-CF2H or CH2-cyclopropyl. In further embodiments it is CF3, CH2-CF2H, CF2H or CH 2 -cyclopropyl.
- R A8 when R A8 is C2-6 alkynyl it is propargyl, acetylene or 1-butyne. In some embodiments it is propargyl.
- R A8 when R A8 is optionally substituted C1-6 alkoxy it is OCF3, OCF2H or OMe.
- R A8 is selected from H, Cl, Br and OMe.
- A is selected from one of the following formulae: , , wherein the wavy line indicates the point of attachment to B and wherein Z 7 , Z 8 , and Z 9 are as defined in any other embodiment herein.
- A is selected from one of the following formulae: , wherein the wavy line indicates the point of attachment to B, and Z 6 is as defined in any other embodiment herein.
- A is formula A2b7.
- A is selected from one of the following formulae: (A3a) and (A3b)
- A is (A3a) or (A3b):
- A is (A3a).
- A is (A3b).
- R A9 In some embodiments, R A9 is selected from methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1- methylcyclopropyl and 2-methylcyclopropyl.
- R A9 is selected from methyl, cyclopropyl, 1-methylcyclopropyl and 2- methylcyclopropyl. In some embodiments, R A9 is selected from methyl and 1-methylcyclopropyl. In some embodiments, R A9 is methyl.
- A is: R A4 R A4 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl; (viii) C 1-6 alkyl ester; (ix) C 1-6 alkyl acyl; (x) C 4-5 heterocyclyl; (xi) C 5 heteroaryl; (xii) C 1-6 alkyl amido, optionally substituted by C 1-3 alkyl amido, CN, OH, C 2-3 alkynyl, C 4-6 heterocycl
- R A4 is CN. In some embodiments R A4 is H. In some embodiments R A4 is -OCHF2. In some embodiments R A4 is cyclopropyl. In some embodiments R A4 is Cl. In some embodiments R A4 is methyl. In some embodiments, R A4 is selected from H, CN, -OCF2H, cyclopropyl, Cl, and methyl. In some embodiments, A is one of formulae (A1a), (A2b), (A3a), and (A3b). In some embodiments, A is of formulae (A1a) or (A2b). In some embodiments, A is selected from one of the following formulae: .
- C-1a In some embodiments, C is (C-1a).
- X is H.
- X is F.
- C is (C-1):
- R N is H, methyl or benzyl optionally substituted with a C 1-3 alkoxy group.
- R N is H, methyl or benzyl substituted with a C 1-3 alkoxy group.
- R N is H, methyl or para-methoxybenzyl.
- R N is H or methyl.
- R N is H or benzyl optionally substituted with a C 1-3 alkoxy group.
- R N is benzyl optionally substituted with a C1-3 alkoxy group.
- R N is benzyl substituted with a C1-3 alkoxy group. In some embodiments, R N is para-methoxybenzyl. In some embodiments, R N is H. In some embodiments, R N is methyl. In some embodiments, R C1 and R C2 together with the carbon atoms to which they are bound form a benzene ring or a pyridine ring, which rings are optionally substituted by one or more R C3 groups. In some embodiments, R C1 and R C2 together with the carbon atoms to which they are bound form a benzene ring which is optionally substituted by one or more R C3 groups.
- R C1 and R C2 together with the carbon atoms to which they are bound form a pyridine ring which is optionally substituted by one or more R C3 groups. In some embodiments, R C1 and R C2 together with the carbon atoms to which they are bound form an unsubstituted benzene ring or an unsubstituted pyridine ring. In some embodiments, R C1 and R C2 together with the carbon atoms to which they are bound form an unsubstituted benzene ring. In some embodiments, R C1 and R C2 together with the carbon atoms to which they are bound form an unsubstituted pyridine ring.
- C is selected from one of the formulae listed in the following table: wherein the wavy line indicates the point of attachment to B, and X is hydrogen or fluorine. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, C is selected from one of the following formulae: . wherein the wavy line indicates the point of attachment to B, R N is as defined in any other embodiment herein, and X is hydrogen or fluorine. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, C is selected from one of the following formulae: wherein X is hydrogen or fluorine. In some of these embodiments, X is H.
- X is F.
- C is selected from one of the following formulae: A and C
- A is:
- X is hydrogen.
- A is selected from: wherein the wavy line indicates the point of attachment to B, and wherein R A9 , R A1 , R A2 , Z 8 , Z 9 , X and R N are as defined in any other embodiment herein.
- X is H.
- X is F.
- A is selected from: wherein the wavy line indicates the point of attachment to B.
- A is selected from: wherein the wavy line indicates the point of attachment to B.
- A-B-C (A1a)
- the compound of formula A-B-C is of the formula (I-Ax): wherein R A1 , R A2 , X 1 , X, R C1 , R C2 and R N are as defined in any other embodiment herein.
- R A1 is H, OH, CN, Br, Cl, optionally substituted -OMe, -O-ethyl, methyl or ethyl, where the optional substituents on the -OMe, O-ethyl, methyl or ethyl groups are selected from OH, CN, and one or more halo groups.
- R A1 is H, CN, OH, Br, Cl, optionally substituted -OMe, -O-ethyl, methyl or ethyl, where the optional substituents on the - OMe, O-ethyl, methyl or ethyl groups are selected from OH, CN, and one or more halo groups.
- R A1 is optionally substituted O-methyl wherein the optional substituents are one or more F groups.
- R A1 is H.
- R A1 is OH.
- R A3 is selected from the group consisting of CN, Br, Cl, OH, H, CF3, C1-2 alkyl, C1-2 alkoxy and NH2.
- R A3 is selected from H, methyl and CN.
- R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted C6 carboaromatic ring or C5-7 heteroaromatic ring the optional substituents are selected from NH2, C1-6 alkyl, C1-6 alkoxy and halo. In other embodiments the optional substituents are selected from NH2, methyl, ethyl, OMe, F, Cl and Br. In some embodiments R A3 and R A2 together with the carbon atoms to which they are bound form an optionally substituted pyridine, an optionally substituted benzene, a pyrrole or a pyrazole.
- R A2 in formula (I-Cx) is selected from fluoro, chloro, bromo and iodo.
- formula (I-Cx) can be any one of formulae (I-Cax) to (I-Cgx) as shown below: 7 5 A-B-C (A2a)
- the compound of formula A-B-C is of the formula (IV-A): wherein Z 1 , R A5 , R A6 , R A7 , X, R C1 , R C2 , and R N are as defined in any other embodiment herein.
- Z 1 is S.
- Z 1 is O.
- R A5 is selected from the group consisting of H, halo, CN, C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups, and C1 alkoxy, optionally substituted by one or more halo groups. In some embodiments, R A5 is selected from H, halo, CN, or methyl optionally substituted by one or more OH groups or one or more halo groups. In some embodiments, R A5 is H.
- R A6 is selected from the group consisting of H, halo, CN, C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups, C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups, C1-6 alkylamino, C1-6 thioalkyl, C1-6 alkyl phosphinyl, and C1-6 alkyl phosphonyl.
- R A6 is selected from the group consisting of H, halo, C1-3 alkyl, optionally substituted by one or more OH or one or more halo groups, and C1-3 alkoxy, optionally substituted by one or more halo groups. In some embodiments, R A6 is H.
- R A7 is selected from H, Cl, Br and OMe.
- R A7 is H.
- formula (IV-A) can be any one of formulae (IV-Aa), (IV-Ab), (IV-Ac), (IV- Ad), (IV-Ae), or (IV-Af) as shown below: wherein R A5 , R A6 , R A7 , X, R C1 , R C2 , and R N are as defined in any other embodiment herein.
- the compound of formula A-B-C is of the formula (IV-B): wherein Z 1 , R A5 , R A6 , X, Q 1 , Q 2 , Q 3 , Q 4 , and R N are as defined in any other embodiment herein.
- formula (IV-B) can be any one of the formulae (IV-Ba), (IV-Bb), (IV-Bc), (IV-Bd), and (IV-Be) as shown below: A-B-C (A2b)
- the compound of formula A-B-C is of the formula (II-Ax): wherein Z 6 , Z 7 , Z 8 , Z 9 , X, R C1 , R C2 and R N are as defined in any other embodiment herein.
- Z 8 and Z 9 are independently selected from the group consisting of H, one or more halo groups, CN, C 1-6 hydrocarbon, optionally substituted by OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups, C 1-6 alkoxy, optionally substituted by C 1-6 alkyl amido, or one or more halo groups, C 1-6 alkylamino, C 1-6 thioalkyl, and C 1-6 alkyl phosphinyl.
- R A8 is selected from H, halo, CN, C 1-6 alkyl optionally substituted by OH or one or more halo groups, C 2-6 alkenyl optionally substituted by OH or one or more halo groups, C 2-6 alkynyl optionally substituted by OH or one or more halo groups, and C 1-6 alkoxy, optionally substituted by one or more halo groups.
- R A8 is selected from H, Cl, Br and OMe.
- formula (II-Ax) can be any one of formulae (II-Aax), (II-Abx), (II-Acx) and (II-Adx) as shown below: wherein Z 7 , Z 8 , Z 9 , X, R C1 , R C2 , and R N are as defined in any other embodiment herein.
- the compound of formula A-B-C is of the formula (II-Bx): wherein Z 6 , X, R C1 , R C2 , and R N are as defined in any other embodiment herein.
- formula (II-Bx) can be any one of formulae (II-Bax) and (II-Bbx) shown below: wherein X, R C1 , R C2 , and R N are as defined in any other embodiment herein.
- the compound of formula A-B-C is of the formula (II-Cx): wherein Z 6 , Z 7 , Z 8 , Z 9 , X and R N are as defined in any other embodiment herein, and Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN and C-PO(Me)2 and the remaining three are C-H.
- Z 8 and/or Z 9 in formula (II-Cx) is selected from fluoro, chloro, bromo or iodo.
- formula (II-Cx) can be any one of formulae (II-Cax) to (II-Cgx) as shown below: wherein Z 6 , Z 7 , Z 8 , Z 9 , X, and R N are as defined in any other embodiment herein.
- A-B-C (A3a) and (A3b) In other embodiments the compound of formula A-B-C is of the formula (III-Ax): (III-Ax), wherein R A9 , X, R C1 , R C2 and R N are as defined in any other embodiment herein.
- the compound of formula A-B-C is of the formula (III-Bx): wherein X, R C1 , R C2 and R N are as defined in any other embodiment herein.
- R A9 in formula (III-Cx) is selected from fluoro, chloro, bromo and iodo.
- formula (III-Cx) can be any one of formulae (III-Cax) to (III-Cgx) as shown below: wherein R A9 , X, and R N are as defined in any other embodiment herein.
- the compound of formula (I) is selected from the following in Table 1.
- the compound is a pharmaceutically acceptable salt of a compound selected from the following in Table 1.
- Table 1. Examples 1 to 19 Example No Structure Example Name 1-(6-(((1S,3S)-3-(Oxazolo[5,4-b]pyridin- 2-ylamino)cyclopentyl)amino)pyridin-3- 1 yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one 1-(6-(((1S,3S)-3-(Thiazolo[5,4-b]pyridin- 2-ylamino)cyclopentyl)amino)pyridin-3- 2 yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 3 yl)amin
- the compound is a pharmaceutically acceptable salt of a compound selected from Examples 1, 2, 3, 5, 8, 10 and 12. In some embodiments the compound is selected from Examples 3, 8, 10 and 12. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3, 8, 10 and 12. In some embodiments the compound is selected from Examples 3, and 12. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3, and 12. In some embodiments the compound is selected from Examples 12, 16, 23, 28, 30, and 32. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12, 16, 23, 28, 30, and 32. In some embodiments the compound is selected from Examples 12 and 16. In some embodiments the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12 and 16.
- the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3 to 8, 10 to 19, and 23 to 27. Any definitions herein relating to formula (A1a) and its substituents may be understood as being equally applicable to formula (A1), and vice versa.
- a compound of formula (I) A-B-C (I) or a pharmaceutically acceptable salt and tautomeric forms or stereoisomers thereof wherein A is of one of the following formulae: wherein the wavy line indicates the point of attachment to B;
- R A1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by one or more OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C 1-6 alkoxy, optionally substituted by OH, one or more halo groups, C 1-6 alkyl amido; (vi) C 1-6 alkyl ester; (vii) C 1-6 alkyl acyl; and (viii) OH;
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (i
- the compound of formula (I) is not according to one or more of the specific compounds described in WO 2024078620 A1. In some embodiments, the compound of formula (I) is not according to one or more of the specific compounds described in WO 2025021188 A1. In some embodiments, the compound of formula (I) is not according to one or more of the specific compounds described in WO 2025007915 A1.
- General synthesis The compounds according to general formula (I-G), (G9) and (G17) can be prepared according to the following schemes 1, 2, 3, 4, 5 and 6. The schemes and procedures described below illustrate synthetic routes to the compounds of general formula (I-G), (G9) and (G17) and are not intended to be limiting.
- Monoarylated diamines of general formula (G3) can be obtained via nucleophilic aromatic substitution (S N Ar) or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G2a) with X being a leaving group like halogen or -S(O)Me as depicted in Scheme 1.
- diamines (G1) may be reacted with (G2a) in the presence of inorganic bases like K 2 CO 3 or Na 2 CO 3 or in the presence of organic bases like triethylamine or DIPEA or without any additional base in polar solvents such as for example DMSO, NMP or nBuOH at temperatures between 100-130 °C.
- the reaction times may vary between 1 hour and 24 hours.
- diamines (G1) may be reacted with (G2a) in the presence of a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8], Pd2(dba)3 or tBuXPhos Pd G3 [1447963-75-8] and a base like Cs2CO3 or NaOtBu in aprotic solvents like 1,4- dioxane, DMF, toluene or DMA at temperatures between room temperature and 130 °C, preferably at 65-100 °C, for 15-24 h.
- a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8]
- Pd2(dba)3 or tBuXPhos Pd G3 [1447963-75-8]
- a base like Cs2CO3 or NaOtBu
- aprotic solvents like 1,4- dioxane, DMF, toluen
- Diamines of general formula (G1) and heteroaryls of general formula (G2a) are either commercially available or can be prepared according to procedures available from the public domain.
- Arylated diamines of general formula (G6) can be obtained from (G3) via copper catalyzed Ullmann couplings with heterocycles (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5).
- Ullmann couplings all methods that are known in the art may be applied.
- (G3) may be reacted with (G4) in the presence of a copper catalyst like Cu(I)I, Cu(Otf) 2 or Cu(Oac) 2 and a base like Cs 2 CO 3 or K 2 CO 3 in polar, aprotic solvents like 1,4-dioxane, DMF or pyridine at temperatures between room temperature and 120 °C, preferably at 100 °C for 15-20 h.
- a ligand like N 1 ,N 2 -dimethylcyclohexane- 1,2-diamine, TMEDA, N 1 ,N 2 -dimethylethane-1,2-diamine or N,N-dimethylglycine might be added to the reaction mixture.
- (G3) may be reacted with boronic acid derivatives (G5) in the presence of a palladium catalyst like 1,1'-bis(di-tert-butylphosphino)ferrocene palladium dichloride [CAS Reg. No.95408- 45-0] or 1,1′-bis(diphenylphosphino)ferrocene palladium dichloride [CAS Reg.
- Heterocycles of general formula (G4) and boronic acid derivatives of general formula (G5) are either commercially available or can be prepared according to procedures available from the public domain.
- Primary amines of general formula (G7) can be obtained from monoprotected diamines of general formula (G6) via deprotection methods. Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods.
- Heteroaryls of general formula (G8) are either commercially available or can be prepared according to procedures available from the public domain.
- An analogous general scheme involves oxadiazoles of general formula (G8a) and its isomers.
- An alternative route to compounds of general formula (I-G) starts with deprotection of diamines of general formula (G3) to give primary amines of general formula (G9) as depicted in Scheme 1.
- deprotection the same procedures apply as described for the synthesis of (G7) from (G6).
- Monoarylated diamines of general formula (G12) can be obtained via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G8) with X being a leaving group such as halogen or -S(O)Me.
- SNAr nucleophilic aromatic substitution
- G8a palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls
- X being a leaving group such as halogen or -S(O)Me.
- An analogous general scheme involves oxadiazoles of general formula (G8a) and its isomers. Deprotection of diamines of general formula (G12) can give primary amines of general formula (G13).
- diamines (G1) may be reacted with (G2) in the presence of inorganic bases like K 2 CO 3 , Na 2 CO 3 or Cs 2 CO 3 or in the presence of organic bases like TEA or DIPEA, or without any additional base in polar solvents such as for example DMSO, NMP, nBuOH or 1,4-dioxane at temperatures between 100-130 °C.
- the reaction times may vary between 1 h and 24 h.
- diamines (G1) may be reacted with (G2) in the presence of a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8], Pd 2 (dba) 3 , tBuXPhos Pd G3 [1447963-75-8] or tBuBrettPhos G3 and a base like Cs 2 CO 3 , NaOtBu or MTBD in aprotic solvents like 1,4-dioxane, DMF, toluene, NMP or DMA at temperatures between room temperature and 130 °C, preferably at 65-100 °C, for 15-24 h.
- a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8]
- Pd 2 (dba) 3 Pd 2 (dba) 3
- tBuXPhos Pd G3 [1447963-75-8]
- Diamines of general formula (G1) and heteroaryls of general formula (G2) are either commercially available or can be prepared according to procedures available from the public domain.
- Arylated diamines of general formula (G6) can be obtained from (G3) via copper catalyzed Ullmann couplings with heterocycles (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5).
- Ullmann couplings all methods that are known in the art may be applied.
- (G3) may be reacted with (G4) in the presence of a copper catalyst like Cu(I)I, Cu(OTf)2 or Cu(Oac)2 and a base like Cs2CO3 or K2CO3 in polar, aprotic solvents like 1,4-dioxane, DMF or pyridine at temperatures between room temperature and 120 °C, preferably at 100 °C for 15-20 h.
- a ligand like DMCDA, TMEDA, N 1 ,N 2 - dimethylethane-1,2-diamine or N,N-dimethylglycine might be added to the reaction mixture.
- Suzuki couplings towards (G6) all methods that are known in the art may be applied.
- Primary amines of general formula (G7) can be obtained from monoprotected diamines of general formula (G6) via deprotection methods. Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods. Appropriate protective moieties for amino groups and their introduction and cleavage are well-known in the art. For an overview of protective group chemistry see for example P.G.M. Wuts, T.W. Greene, Greene’s Protective Groups in Organic Synthesis 4 th ed., J. Wiley & Sons, 2006. Final compounds of general formula (G9) can be synthesized from primary amines of general formula (G7) via S N Ar or palladium catalyzed Buchwald-Hartwig amination.
- Primary amines of general formula (G7) can be reacted with heteroaryls of general formula (G8) with LG being a leaving group like halogen, such as chlorine or bromine, or -S(O) 2 Me applying procedures in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3.
- Heteroaryls of general formula (G8) are either commercially available or can be prepared according to procedures available from the public domain.
- An alternative route to compounds of general formula (G9) starts with deprotection of diamines of general formula (G3) to give primary amines of general formula (G10) as depicted in Scheme 3. For deprotection the same procedures apply as described for the synthesis of (G7) from (G6).
- Final compounds of general formula (G9) can be synthesized from aryl iodides of general formula (G11) via copper catalyzed Ullmann couplings with heterocycles H-D (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5) applying procedures in analogy to those described for the synthesis of compounds (G6) from (G3) in Scheme 3.
- Yet another approach to compounds of general formula (G9) starts from monoprotected diamines (G1) or their corresponding salts and preassembled heteroaryls (G12) with LG being a leaving group like halogen, e.g.
- Scheme 4 Routes for the preparation of compounds of general formula (G9) and intermediates (G11) are described in the scheme in which LG is a leaving group, PG is a protective group, and Z 6 , Z 7 , Z 8 and Z 9 have the meaning as given for general formula (A2b), supra. D is defined above.
- Monoarylated diamines of general formula (G13) can be obtained via S N Ar or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G8) with LG being a leaving group like halogen, such as chlorine or bromine, or -S(O) 2 Me.
- Primary amines of general formula (G7) or their corresponding salts can be reacted with one carbon equivalents like CDI or TCDI in the presence of inorganic bases like sodium hydroxide or in the presence of organic bases like TEA or DIPEA, or without any additional base in polar, aprotic solvents like DMF at temperatures between rt and the boiling point of the solvent, preferably at 100 °C for 1-2 h to give an acylimidazole intermediate.
- This intermediate may be reacted in situ with 1,2-dianilines (G15) in the presence of a carbodiimide reagent like EDC at temperatures between rt and the boiling point of the solvent, preferably at 100 °C for 15-24 h to give (G17).
- Scheme 5 Scheme 5: Routes for the preparation of compounds of general formula (G17) in which Z 6 , Z 7 , Z 8 and Z 9 have the meaning as given for general formula (A2b), supra. D is defined above.
- protected intermediates of general formula (G16) prepared according to the routes depicted in Schemes 3 or 4, may be deprotected to give compounds of general formula (G17). Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods.
- Suitable protective groups may be groups such as para- methoxybenzyl (PMB), 4-methylbenzenesulfonyl (Ts) or benzyl (Bn).
- PMB para- methoxybenzyl
- Ts 4-methylbenzenesulfonyl
- Bn benzyl
- Deprotection of a PMB group for example could be achieved by reaction with acids such as TFA in solvents like DCM, or without any additional solvent, at temperatures between rt and the boiling point of the solvent, preferably at 60-100 °C for 15 min to 18 h.
- Deprotection of a Ts group may be performed by reaction with a base such as K 2 CO 3 or Na 2 CO 3 in polar, protic solvent such as MeOH or EtOH at temperatures between rt and the boiling point of the solvent, preferably at 60 °C for 1-4 h.
- Aryl bromides of general formula (G18), prepared according to the procedures depicted in Schemes 3-5, can be functionalized under metal or metallaphotoredox catalysis (see for exampleChan 2022), e.g. via late-stage functionalisation, with nucleophiles of general formula (G19) (see for example Ley and Thomas 2003) or boronic acid derivatives (G20) (see for example Miyaura and Suzuki 1995) or stannanes (G21) (see for exampleCordovilla 2015) to give final compounds of general formula (G9).
- metal or metallaphotoredox catalysis all methods that are known in the art may be applied.
- Nucleophiles of general formula (G19) and boronic acid derivatives of general formula (G20) and stannanes (G21) are either commercially available or can be prepared according to procedures available from the public domain.
- Stereo centers may also be introduced by asymmetric synthesis. All stereoisomers are included within the scope of the disclosure. Persons skilled in the art will appreciate that starting materials for any of the above processes can in some cases be commercially available. Persons skilled in the art will appreciate that processes for some starting materials above could be found in the general common knowledge. It will also be understood that some of the compounds described in the processes above may exhibit the phenomenon of tautomerism and the processes described above include any tautomeric form. All novel intermediates form a further aspect of the disclosure. EXPERIMENTAL SECTION NMR peak forms are stated as they appear in the spectra, possible higher order effects have not been considered. The following table lists the abbreviations used in this paragraph and in the examples section as far as they are not explained within the text body.
- PrepMethod G The compound was purified by preparative HPLC on a Waters Xselect CSH Prep Fluoro-phenyl OBD column (5 ⁇ m, 150 ⁇ 30 mm ID) using a gradient of MeCN in H 2 O/FA (0.1%) buffer system as mobile phase.
- PrepMethod H The compound was purified by preparative HPLC on a XBridge C18 OBD column (3.5 ⁇ m, 75 ⁇ 30 mm ID) using a gradient of MeCN in a H 2 O/NH 4 HCO 3 (10 mM)/NH 3 (0.05%, aq) buffer system as mobile phase.
- PrepMethod I The compound was purified by preparative HPLC on a YMC-Actus Triart C18 ExRs column (5 ⁇ m, 150 ⁇ 30 mm ID) using a gradient of MeCN in H 2 O/NH 4 HCO 3 (10 mM)/NH 3 (0.05%, aq) buffer system as mobile phase.
- PrepMethod J The compound was purified by preparative HPLC on a XBridgeTM C18 OBD column (5 ⁇ m, 150 ⁇ 30 mm ID) using a gradient of MeCN in a H 2 O/NH 4 HCO 3 (10 mM)/NH 3 (0.05%, aq) buffer system as mobile phase.
- PrepMethod K The compound was purified by preparative HPLC on a Waters Xselect CSH C18 OBD column (5 ⁇ m, 250 ⁇ 19 mm ID) using a gradient of MeCN in a H 2 O/NH 4 HCO 3 (10 mM)/NH 3 (0.05%, aq) buffer system as mobile phase; Relevant fractions were collected, combined, and freeze-dried or evaporated to give the purified compound or relevant fractions were collected, combined, and concentrated at reduced pressure, the aqueous layer was extracted with DCM or EtOAc, and the organic layer was dried, either over Na2SO4 or by using a phase-separator, and then concentrated at reduced pressure and when needed dried in vacuo, to give the purified compound.
- (xi) yields, where present, are not necessarily the maximum attainable, and when necessary, reactions were repeated if a larger amount of the reaction product was required; (xii) where certain compounds were obtained as an acid-addition salt, for example a mono-hydrochloride salt or a di-hydrochloride salt, the stoichiometry of the salt was based on the number and nature of the basic groups in the compound, the exact stoichiometry of the salt was generally not determined, for example by means of elemental analysis data; where stated the salts were treated according to literature-known processes to generate the corresponding free base prior to being used; (xiii) in general, the structures of the end-products of the Formula (I) were confirmed by NMR and/or mass spectral techniques; proton NMR chemical shift values were measured on the delta scale using Bruker Avance III 300, 400, 500 and 600 spectrometers, operating at 1 H frequencies of 300, 400, 500 and 600 MHz, respectively.
- compounds of Formula (I) appear as tautomers in the NMR-spectrum, in which instances only peaks of the major tautomer are reported. In some cases, compounds of Formula (I) appear as tautomers in a more equal relationship, in such instances the peaks of such tautomers are either reported as multiplets, if the signals of said tautomer are partially overlapping with other peaks, or as individual peaks, if the signals of said tautomers are well separated. The integral of such peaks are reported as fractions of protons, indicating the ratio of the tautomer in the mixture.
- Electrospray mass spectral data were obtained using a Waters Acquity UPLC coupled to a Waters single quadrupole mass spectrometer or similar equipment, acquiring both positive and negative ion data, and generally, only ions relating to the parent structure are reported; high resolution electrospray mass spectral data were obtained using a Waters XEVO qToF mass spectrometer or similar equipment, coupled to a Waters Acquity UPLC, acquiring either positive and negative ion data, and generally, only ions relating to the parent structure are reported; (xv) intermediates were not necessarily fully purified but their structures and purity were assessed by TLC, analytical HPLC/UPLC, and/or NMR analysis and/or mass spectrometry; (xvi) in general Examples and intermediate compounds are named using ChemDraw Professional version 20.1.1.125 or version 21.0.0 from PerkinElmer.
- ChemDraw Professional version 20.1.1.125 or version 21.0.0 generates the names of chemical structures using the Cahn-Ingold-Prelog (CIP) rules for stereochemistry and follows IUPAC rules as closely as possible when generating chemical names. Stereoisomers are differentiated from each other by stereodescriptors cited in names and assigned in accordance with the CIP rules.
- No.67579-81-1) (0.388 g, 2.73 mmol) was added to tert-butyl ((1S,3S)-3- ((5-iodopyridin-2-yl)amino)cyclopentyl)carbamate intermediate 1 (1.10 g, 2.73 mmol), 1,3- dihydro-2H-benzo[d]imidazol-2-one (CAS Reg. No.615-16-7) (0.549 g, 4.09 mmol),Cs2CO3 (2.67 g, 8.18 mmol) and CuI (0.519 g, 2.73 mmol) in 1,4-dioxane (15 mL) at rt.
- Zinc powder (7.83 g, 120 mmol) was added to N-(6-chloropyridin-3-yl)-3-nitropyridin-2-amine intermediate 4 (5 g, 20 mmol) and NH4Cl (10.7 g, 200 mmol) in a mixture of EtOH (50 mL) and EtOAc (50 mL) at 20 °C and the mixture stirred at 60 °C for 15 h.
- No.32315-10-9) (1.936 g, 6.53 mmol) was added in portions to N 3 -(6-chloropyridin-3-yl)pyridine-2,3-diamine intermediate 12 (1.2 g, 5.44 mmol), Et3N (7.6 mL, 54 mmol) and DMAP (0.332 g, 2.72 mmol) in THF (100 mL) at 0 °C. The solution was stirred at 60 °C for 15 h. The reaction was poured into sat NaHCO3 (250 mL) and extracted with EtOAc (3 x 200 mL). The organic layer was dried over Na2SO4, filtered and evaporated.
- No.171197-80-1 (203 mg, 0.91 mmol) was added to a mixture of the 2HCl salt of (1S,3S)-N 1 -(6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 (220 mg, 0.83 mmol) and Na2CO3 (263 mg, 2.48 mmol) in DMSO (15 mL). The resulting mixture was stirred at 100 °C for 15 h under a nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure and the obtained material was taken up with EtOAc (300 mL).
- Example 5 1-(6-(((1S,3S)-3-((6-Methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)amino)pyridin-3-yl)-1,3- dihydro-2H-benzo[d]imidazol-2-one – compound 5 (1S,3S)-N 1 -(5-Iodopyridin-2-yl)-N 3 -(6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 22 (57 mg, 0.14 mmol), 1,3-dihydro-2H-benzo[d]imidazol-2-one (23.2 mg, 0.17 mmol), CuI (27 mg, 0.14 mmol), K2CO3 (60 mg, 0.43 mmol), 1,4-dioxane (1 mL) and DMCDA (0.023 mL, 0.14 mmol) was mixed in a vial
- Example 8 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one – compound 8 (1S,3S)-N 1 -([1,2,4]Triazolo[1,5-a]pyridin-2-yl)-N 3 -(5-iodopyridin-2-yl)cyclopentane-1,3-diamine intermediate 25 (66 mg, 0.16 mmol), 1,3-dihydro-2H-benzo[d]imidazol-2-one (26 mg, 0.19 mmol), CuI (30 mg, 0.16 mmol), K2CO3 (66 mg, 0.48 mmol), dioxane (1 mL) and DMCDA (0.025 mL, 0.16 mmol) was mixed in
- the vial was capped, evacuated, and filled with N2 (g) (x 2). The mixture was stirred at 100 °C for 20 h under a N2 (g) atmosphere. The reaction was cooled to rt and EtOAc was added. The mixture was filtered through Celite, the plug washed with EtOAc and MeOH and the combined filtrates were concentrated under reduced pressure. The crude material was purified by preparative HPLC (PrepMethod C, gradient: 20- 60%) and the solid obtained after lyophilization was re-dissolved in a mixture of EtOAc/MeOH (1:2).
- Example 21 1-(4-Methoxybenzyl)-3-(6-(((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclo- pentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 21 Pd-PEPPSI-lpentCl 2-methylpyridine (19 mg, 0.02 mmol) was added to a mixture of (1S,3S)-N 1 - (6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 as 2TsOH salt (748 mg, 1.39 mmol), 3-(6-chloropyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin- 2-one intermediate 7 (170 mg, 0.46 mmol)
- Example 24 1-(6-(((1S,3S)-3-((5-(Trifluoromethyl)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 24 Pd-PEPPSI-lpentCl 2-methylpyridine (58 mg, 0.07 mmol) was added to a mixture of 1-(6- chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (170 mg, 0.69 mmol), (1S,3S)-N 1 -(5-(trifluoromethyl)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 28 as 2TFA salt (392 mg, 0.83 mmol) and Cs 2 CO 3 (674 mg, 2.07 mmol) in 1,4- dioxan
- Example 26 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 26 Pd-PEPPSI-lpentCl 2-methylpyridine (26 mg, 0.03 mmol) was added to a mixture of 1-(6- chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (150 mg, 0.61 mmol), (1S,3S)-N 1 -([1,2,4]triazolo[1,5-a]pyridin-2-yl)cyclopentane-1,3-diamine intermediate 24 as 3HCl salt (238 mg, 0.73 mmol) and Cs2CO3 (1.19 g, 3.65
- Example 27 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-N,N-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxamide – compound 27 Ethyl 1-(6-(((1S,3S)-3-((5-(difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)- 2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxylate intermediate 48 (230 mg, 0.44 mmol) was added to solution of dimethylamine in MeOH (30%, 20 mL) at 20 °C and the mixture sealed in a microwave tube.
- Example 28 1-(5-Fluoro-6-(((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one – compound 28 Pd-PEPPSI-lpentCl 2-methylpyridine (24 mg, 0.03 mmol) was added to a mixture of (1S,3S)-N 1 - (6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 as 3TsOH salt (485 mg, 0.68 mmol), 1-(6-chloro-5-fluoropyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one intermediate 29 (150 mg, 0.57 mmol) and Cs2CO3 (927 mg, 2.84 mmol)
- Example 32 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine-2,4-dione – compound 32 Pd-PEPPSI-lpentCl 2-methylpyridine (91 mg, 0.11 mmol) was added to a mixture of (1S,3S)-N 1 - (5-(difluoromethoxy)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 31 as 3HCl salt (256 mg, 0.72 mmol), 1-(6-chloropyridin-3-yl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine- 2,4-dione intermediate 41 (100 mg, 0.36 mmol) and Cs2CO3 (5
- Assay 1 - Biochemical human PCSK9 assay This assay measures binding of compounds to PCSK9 by homogenous time-resolved fluorescence resonance energy transfer (TR-FRET). To determine the IC 50 of inhibitors of the interaction between the human PCSK9 and Alexa647 labelled small molecule, fluorescent probe displacement was monitored by homogenous TR- FRET technology.
- TR-FRET time-resolved fluorescence resonance energy transfer
- Tb terbium
- mAb Anti-6His Tb cryptate Gold Cisbio
- Recombinantly expressed and purified PCSK9-TEV-His6 (1 nM) was mixed with a fluorescent probe (5 nM) and anti His-Tb-cryptate antibody (0.2 nM) in assay buffer (10 mM HEPES/NaOH, pH 7.4, 150 mM NaCl, 0.005 (v/v) % Tween 20).6 ⁇ L were subsequently added to an assay- ready plate containing 0.06 ⁇ L of controls and test compound 10 dose-response serial dilutions starting at a concentration of 10 mM (with 100 ⁇ M top and 3.2 nM lowest final concentration) by using Certus flex dispenser.
- the plate was sealed, and the reaction was incubated overnight (18-24h) at RT in the dark.
- FRET signal quantification was achieved by PHERAstar FSX (BMG) plate reader.
- the created data file contained the emission of FRET acceptor channel (665 nm, probe), FRET donor channel (620 nm, Tb-cryptate, excitation at 337 nm) and the FRET ratio (665 nm/620 nm signal x 10.000) which was used for calculation of a test compound ⁇ s IC50.
- Assays 2 and 2a - Biophysical human PCSK9 assays These assays measure binding of compounds to PCSK9 by SPR (“surface plasmon resonance”, a biophysical method) at plasma and a representative endosomal pH (7.4 and 5.6 respectively).
- the pH 7.4 (Assay 2) SPR binding experiments were performed on a Biacore S200 optical biosensor unit at 30 °C.
- a Series S Sensor Chip SA that is designed to bind biotinylated molecules for interaction analysis in Biacore systems was equilibrated at room temperature prior to use.
- the running buffer for protein tethering and subsequent ligand binding experiments was 10mM HEPES pH 7.4, 150mM NaCl, 0.05% (v/v) Tween 20 pH 7.4.
- biotinylated human PCSK9 (31-692)-Avi-His6 (Charles River Laboratories) at a concentration of 0.5mg/mL was used.
- the surface Prior to the surface tethering, the surface was exposed to a solution of 50mM NaOH, 500mM NaCl via 3 consecutive injections of this solution with a contact time of 60 s and a flowrate of 10 ⁇ L min -1 to remove non-conjugated streptavidin.
- the PCSK9 protein was diluted to a concentration of 20 ⁇ g/mL using running buffer and injected with a contact time of 180-300 s and a flowrate of 10 ⁇ L min -1 over a single flow channel (typically flow channel 2 or flow channel 4) with the aim to achieve protein capture levels of > 5000 response units (RU).
- Remaining biotin binding sites were blocked via 2 consecutive injections of a 10 ⁇ M D-biotin solution in running buffer with a contact time of 60 s and a flowrate of 10 ⁇ L min -1 over all flow-channels.
- Flow-channels 1 and 3 typically served as a reference surface throughout the subsequent binding experiments.
- the binding experiments were all performed at a flow rate of 30 ⁇ L min -1 and by employing the method of single-cycle kinetics. This approach involves the sequential injection of a compound concentration series without regeneration steps. A contact time between 90-150 s was selected, which was followed by a 40 min dissociation phase to allow for a proper estimation of the dissociation rate constant.
- Test compounds were delivered in DMSO at a concentration of 10 mM and a digital dispenser HP D300 was used to set up the compound concentration series using 6 concentrations. The tested concentrations have been 30, 100, 300, 1000, 3000 and 10000 nM. Prior to injecting any compound, the surfaces were equilibrated by injecting running buffer over them in three separate pulses. The data collection rate was set to 10 Hz.
- the raw sensorgrams of the compound injections were first subjected to reference subtraction (subtracting the signal from flow channel 1 and/or 3 from the signal from channels 2 and/or 4 respectively) and then blank subtraction (subtracting the signal from injecting DMSO controls from the reference subtracted data).
- the resulting double-referenced sensorgrams were then fitted using a 1:1 binding interaction model using the manufactures software package to extract kinetic- and affinity data.
- Active compounds have been defined by creating a detectable binding signal at the highest compound concentration (10mM) of ⁇ 3 RUs.
- Buffer A for protein tethering was 10 mM Hepes, 150 mM NaCl, 0.05% (v/v) Tween 20 pH 7.4. (Cytiva, Product#BR100671). Buffer B used for the subsequent ligand binding experiments was 20 mM Cacodylate, 150 mM NaCl, 0.05% (v/v) Tween 20, pH 5.60.
- the biotinylated human PCSK9 (31-692)-Avi-His6 (Charles River Laboratories) at a concentration of 0.5 mg/mL was diluted to a concentration of 20 ⁇ g/mL using Buffer A and injected over flow cell 2 with a contact time of 600 s and a flowrate of 5 ⁇ L.min- 1 with the aim to achieve protein capture levels of 6000-7000 RU. Remaining biotin binding sites were blocked with a single injections of a 10 ⁇ M D-biotin solution (Avidity, Product#BIO200) in running buffer with a contact time of 60 s and a flowrate of 10 ⁇ L.min -1 over all flow cells.
- a 10 ⁇ M D-biotin solution (Avidity, Product#BIO200) in running buffer with a contact time of 60 s and a flowrate of 10 ⁇ L.min -1 over all flow cells.
- Flow cells 1 served as a reference surface during the subsequent ligand binding experiments.
- the protein surface was stabilised over night using standby flow, and Buffer A was exchanged with Buffer B by priming the system the next day prior to the ligand binding experiments
- the binding experiments were all performed at a flow rate of 30 ⁇ L.min -1 and by employing the method of single-cycle kinetics. This approach involves the sequential injection of a compound concentration series without regeneration steps. A contact time of 120 s was used, which was followed by a 40 min dissociation phase to allow for a proper estimation of the dissociation rate constant.
- Compounds have been tested in a concentration series using 6 concentrations. The tested concentrations have been 30, 100, 300, 1000, 3000 and 10000 nM.
- the raw sensorgrams of the compound injections were first subjected to reference subtraction (subtracting the signal from flow-channel 1 from signal from channel 2) and then blank subtraction (subtracting the signal from injecting 2 DMSO controls from the reference subtracted data).
- the resulting double-referenced sensorgrams were then fitted using a 1:1 binding interaction model using the manufactures software package (BIAcore Insight Evaluation software V 5.0.18.22102) to extract kinetic- and affinity data.
- the comparator compound used in Assays 2 and 2a is example 493 in WO 2020/150473 A2. .
- Table 3 SPR Data Assay 2 Assay 2 Assay 2 Assay 2 (PCSK9 Assay 2a (PCSK9 (PCSK9 Assay 2a Assay 2a BIAcore pH 5.6 BIAcore BIAcore DBA pH 5.6 SPR pH 5.6 SPR DBA SPR Example No.
- the assay is based on exogenous PCSK9 protein (WT, assay 3 or D374Y mutant, assay 3a) and LDL complexed with a pH-sensitive dye (pHrodoTM Red-LDL). Outside the cells, at neutral pH, the pHrodoTM Red-LDL is dimly fluorescent but upon LDLR mediated endocytosis it fluoresces brightly.
- PCSK9 trafficks the LDL receptor (LDLR) to intrecellular degradation and reduces uptake of LDL. Inhibition of PCSK9 reduces LDLR degradation and the increased LDL uptake is quantified by fluorescence microscopy.
- Assay medium OptiMem (Gibco #51985) + Penicilin/Streptomycin (Gibco #15140122, 1:100 dilution) Labelled LDL: Low Density Lipoprotein From Human Plasma, pHrodoTM Red (pHrodoTM Red- LDL) (Invitrogen #L34356) Cells: HepG2 (ATCC #HB-8065) WT PCSK9 protein: In-house.
- Assay 3 Neutral Control DMSO (100%) Assay 3 Inhibitor Control: 6'-(((1S,3S)-3-((3H-Imidazo[4,5-b]pyridin-2- yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one (10 ⁇ M) Synthesis of Assay 3 Inhibitor Control 6'-(((1S,3S)-3-((3H-Imidazo[4,5-b]pyridin-2-yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2- one A mixture of 6'-(((1S,3S)-3-((3-(4-methoxybenzyl)-3H-imidazo[4,5-b]pyridin-2- yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one and 6
- Test compounds were prepared in concentration response in DMSO with a half-log dilution factor in DMSO in Echo 384 LDV plates (Labcyte LP-#0200) starting at 10 mM. 2. 30 nL of above test compounds were dispensed with Echo 655 (Labcyte) to cells for a top concentration of 10 ⁇ M (Assay 3) or single concentration of 0.1 ⁇ M (Assay 3a). 3. Assay 3: WT PCSK9 protein was diluted to 375 nM with assay medium and dispensed to cells with Multidrop Combi (ThermoFisher), 10 ⁇ L per well, for a final concentration of 125 nM.
- Assay 3a PCSK9 protein (D374Y mutant) was diluted to 6 nM with assay medium and dispensed to cells with Multidrop Combi (ThermoFisher), 10 ⁇ L per well, for a final concentration of 2 nM. 4. Plates were incubated at 37 °C, 5% CO2 for 24 h. Day 3 1. 6 ⁇ g/mL pHrodoTM Red-LDL in assay medium was dispensed to cells with Multidrop Combi (ThermoFisher), 10 ⁇ L per well. 2.
- the comparator compound used in Assays 3 and 3a is example 493 in WO 2020/150473 A2.
- Assay 4 - hERG assay human Ether-á-go-go-Related Gene
- This assay human Ether-á-go-go-Related Gene measures activity of the compounds at the potassium ion channel hERG (human Ether-á-go-go-Related Gene).
- hERG human Ether-á-go-go-Related Gene
- hERG Chinese hamster ovary K1 (CHO) cell lines over- expressing the ion channel of choice (hERG) were used from live culture. All solutions were stored at 4 °C or -20 °C. All compounds were dispensed as 10 or 50mM DMSO stocks, in 96 well plates and diluted to a format that allowed testing in a 6 point cumulative assay (final DMSO concentration 2% or 0.4% DMSO). Only wells that passed previously agreed acceptance criteria for this platform were used in this analysis (500 MegaOhm seal resistance and current size >0.2 nA, with positive controls including Verapamil and DMSO being consistent).
- Assay 5 GSK3 ⁇ Assay (ThermoFisher assay) This assay measures the activity of the compounds at GSK3 ⁇ (Glycogen synthase kinase-3 beta). The test compounds were screened in 1% DMSO (final) in the well. For 10-point titrations, 3- fold serial dilutions are conducted from the starting concentration of 10 ⁇ M.
- Assay Protocol Bar-coded Corning, low volume NBS, black 384-well plate 1.2.5 ⁇ L – 4X Test Compound or 100 nL 100X plus 2.4 ⁇ L kinase buffer 2.5 ⁇ L – 2X Peptide/Kinase Mixture 3.2.5 ⁇ L – 4X ATP Solution 4.30-second plate shake 5.60-minute Kinase Reaction incubation at room temperature 6.5 ⁇ L – Development Reagent Solution 7.30-second plate shake 8.60-minute Development Reaction incubation at room temperature 9.
- step 2 the 2X GSK3 ⁇ (GSK3 beta) / Ser/Thr (Glycogen synthase kinase-3 beta/ Serine/ Threonine) 09 mixture is prepared in 50 mM HEPES (4-(2-hydroxyethyl)-1- piperazineethanesulfonic acid) pH 7.5, 0.01% BRIJ-35, 10 mM MgCl 2 , 1 mM EGTA (egtazic acid).
- HEPES 4-(2-hydroxyethyl)-1- piperazineethanesulfonic acid
- the final 10 ⁇ L Kinase Reaction consists of 0.22 - 0.92 ng GSK3 ⁇ (GSK3 beta) and 2 ⁇ M Ser/Thr 09 in 50 mM HEPES pH 7.5, 0.01% BRIJ-35, 10 mM MgCl 2 , 1 mM EGTA.
- the ATP Solution is diluted to a 4X working concentration in Kinase Buffer (50 mM HEPES pH 7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA).
- Step 6 the Development Reagent is diluted 1:512 in Development Buffer (10X Novel PKC Lipid Mix: 2 mg/mL Phosphatidyl Serine, 0.2 mg/mL DAG in 20 mM HEPES, pH 7.4, 0.3% CHAPS).
- Development Buffer 10X Novel PKC Lipid Mix: 2 mg/mL Phosphatidyl Serine, 0.2 mg/mL DAG in 20 mM HEPES, pH 7.4, 0.3% CHAPS.
- Graphing Software SelectScreen® Kinase Profiling Service uses XLfit from IDBS.
- the dose response curve is curve fit to model number 205 (sigmoidal dose-response model). If the bottom of the curve does not fit between -20% & 20% inhibition, it is set to 0% inhibition. If the top of the curve does not fit between 70% and 130% inhibition, it is set to 100% inhibition.
- MMTr-protected oligonucleotide (MMTr-ON) with the above sequence was synthesised on an ⁇ KTA OligoPilot Plus 100 synthesizer (GE Healthcare), on a 940 ⁇ mol scale, using a standard synthesis cycle of detritylation (3% dichloroacetic acid in toluene), coupling (coupling agent: 0.25 M 5-[3,5-bis(trifluoromethyl)phenyl]-1H-tetrazole solution in acetonitrile), capping (Cap A: 20% N-methylimidazole and 80% acetonitrile; Cap B: 20% pyridine, 20% acetic anhydride and 60% acetonitrile), oxidation (0.05 M iodine in pyridine and water) or thiolation (0.2 M xanthane hydride in pyridine), and solid supports (UNY Primer Support 5G ⁇ 353 ⁇ mol/g, GE Healthcare).
- the solution was filtered, and the MMTr-ON product was purified using HPLC (XBridge C18, 10 ⁇ m 50x250 mm column; 5-45% acetonitrile in aqueous NH 4 HCO 3 (50 mM). Fractions containing the MMTr-ON product were combined, and volatiles were removed on a Speedvac. The residue was dissolved in water (4 mL) and the MMTr group was removed by treating the obtained solution with acetic acid 10% (1 mL) at 40 °C for 60 min. NaOAc (3 M aq, 0.6 mL) and EtOH (95%, 20 mL) were sequentially added. The mixture was stored at -20 °C for 120 min and centrifuged for 15 min at 4 °C.
- HA-oligonucleotide (1074 mg) was dissolved in water (11.176 mL), TEA (0.38 mL) was added and the pH was immediately checked, then 765 mg of GalNAc ligand 1-OPfp ester (Kim 2024, dissolved in 2.79 mL of ACN) was added to the tube. The mixture was shaken for 4 h, at room temperature.
- the fractions were concentrated (ammonia buffer), and the oligo was precipitated with NaOAc in EtOH (10% NaOAc in 20 mL 80% EtOH) overnight. Then, the fractions were centrifuged and immediately submitted to desalt.
- the ASO was desalted using an ⁇ KTA system using WorkBeads Dsalt (50 mL) column at a flowrate of 10mL/min of water over 20 mins. Injected in 15 mL of 1 M aq NaCl and fractions were collected based on absorbance at 260 nm. The pure fraction was collected and freeze- dried overnight. A sample was taken to check absorbance with nanodrop.
- mice Heterozygous male human PCSK9 knock-in (hPCSK9-KI) mice (Carreras 2019) were fed a regular chow diet throughout and dosed via subcutaneous injections with murine Pcsk9 GalNAc-ASO (Mouse GalNAc ASO for in vivo above) at 5 mg/kg/week formulated in PBS for 4 weeks with one additional loading dose in week 1 to ablate endogenous hepatic murine Pcsk9 expression levels prior to compound dosing.
- murine Pcsk9 GalNAc-ASO Mae GalNAc ASO for in vivo above
- the comparator compound used in Assay 6 is example 493 in WO 2020/150473 A2. .
- Table 4 – in vivo data Dose LDL-C reduction Example No. (mg/kg/day) (%) Comparative Example 493 30 -27.5% in WO 2020/150473 A2 12 100 -35
- A a compound of Formula (I) A-B-C (I) or a pharmaceutically acceptable salt thereof, wherein A is of one of the following formulae: wherein the wavy line indicates the point of attachment to B;
- R A1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, or C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH;
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C
- A-B-C is of the formulae (I-A), (I-B), (I-Ba), (I-Bb), (I-C), (I-Ca), (I-Cb), (I-Cc), (I-Cd) and (I-Ce) wherein all definitions are according to statement A1; A11.
- A-B-C is of the formula (III-A), (III-B), (III-C), (III-Ca), (III-Cb), (III-Cc), (III-Cd) and (III-Ce) wherein all definitions are according to statement A1: 20137788--WWO- PPCT 1711 H pharmaceutically acceptable salt thereof.
- A14 A compound listed in Table 1 or a pharmaceutically acceptable salt thereof.
- A15 The compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, for use in therapy.
- a pharmaceutical composition comprising the compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable diluent, carrier or excipient.
- A17. The compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to statement A16 for use in the treatment of a cardiovascular disease.
- the compound for use according to statement A17 wherein the compound is administered simultaneously, separately or sequentially in combination with an additional active ingredient selected from the group consisting of: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) a ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs.
- an additional active ingredient selected from the group consisting of: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) a ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs.
- cardiovascular disease is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure and congestive heart failure.
- cardiovascular disease is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure and congestive heart failure.
- A20 Use of a compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to statement 16 in a method of medical treatment.
- A21. A method of medical treatment comprising administering to the patient the pharmaceutical
- a method of treating PCSK9-mediated disease or disorder in a patient in need thereof comprising administering to the patient a therapeutically effective amount of the compound or pharmaceutically acceptable salt thereof according to any one of statements A1 to A14 or the pharmaceutical composition according to statement A16.
- A24. The method according to statement A23, wherein the disease or disorder is a cardiovascular disease or disorder.
- cardiovascular disease or disorder is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure or congestive heart failure.
- A is of one of the following formulae: wherein the wavy line indicates the point of attachment to B;
- X 1 is N or C-R A3 ;
- R A1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C 1-6 hydrocarbon, optionally substituted by OH, CN, C 1-6 alkyl acyl, C 1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, or C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH;
- R A2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C
- B25 The compound of any one of statements B1 to B20, or a pharmaceutically acceptable salt thereof, wherein C is selected from one of the following formulae: B26.
- A-B-C is of the formulae (I-Ax), (I-Bx), (I-By), (I-Bax), (I-Bay), (I-Bbx), and (I-Bcx) wherein all definitions are according to statement B1; B30.
- A-B-C is of the formulae (I-Cx), (I-Cax), (I-Cbx), (I-Ccx), (I-Cdx), (I-Cex), (I-Cfx), and (I-Cgx) wherein all definitions are according to statement B1 or formula (C-2a);
- A-B-C is of the formulae (IV-A), or (IV-B) wherein all definitions are according to statement B1 or formula (C-2a): B32.
- A-B-C is of the formulae (II-Cx), (II-Cax), (II-Cbx), (II-Ccx), (II-Cfx) and (II-Cgx) wherein all definitions are according to statement B1 or formula (C-2a); B34.
- A-B-C is of the formulae (III-Ax), (III-Bx), (III-Cx), (III-Cax), (III-Cbx), (III-Ccx), (III-Cfx) and (III- Cgx) wherein all definitions are according to statement B1 or formula (C-2a); B35.
- B36 The compound any one of statements B1 to B20, B22 to B26, and B28 to B34, or pharmaceutically acceptable salts thereof, wherein X is H. B37.
- the compound or pharmaceutically acceptable salt thereof for use according to statement B41 wherein the compound is administered simultaneously, separately or sequentially in combination with an additional active ingredient selected from the group consisting of: i) a statin or pharmaceutically acceptable salt thereof; ii) a cholesterol absorption inhibitor or pharmaceutically acceptable salt thereof; iii) a SGLT2 inhibitor or pharmaceutically acceptable salt thereof; iv) a P2Y12 inhibitor or pharmaceutically acceptable salt thereof; v) a ATP-citrate lyase inhibitor or pharmaceutically acceptable salt thereof; and vi) anti-hypertensive drugs or pharmaceutically acceptable salt thereof.
- an additional active ingredient selected from the group consisting of: i) a statin or pharmaceutically acceptable salt thereof; ii) a cholesterol absorption inhibitor or pharmaceutically acceptable salt thereof; iii) a SGLT2 inhibitor or pharmaceutically acceptable salt thereof; iv) a P2Y12 inhibitor or pharmaceutically acceptable salt thereof; v) a ATP-citrate lyase inhibitor or pharmaceutically
- the compound or pharmaceutically acceptable salt thereof for use according to statement B41 wherein the treatment comprises administering to a subject in need thereof, a first amount of a compound of Formula (I), or a pharmaceutically acceptable salt thereof and a second amount of at least one additional active ingredient, wherein the first amount and the second amount together comprise a therapeutically effective amount.
- the compound or pharmaceutically acceptable salt thereof for use according to statement B43, wherein the at least one additional active ingredient may be selected from (a) a statin or pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof.
- statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof.
- statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof.
- B49 The compound or pharmaceutically acceptable salt thereof for use according to statement B48, wherein the statin is rosuvastatin or a pharmaceutically acceptable salt thereof.
- B50 The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B45 to B49, wherein the statin is administered in a moderate-intensity dosing.
- B51 The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B45 to B49, wherein the statin is administered in a high-intensity dosing.
- B52 The compound or pharmaceutically acceptable salt thereof for use according to statement B44, wherein the at least one additional active ingredient is ezetimibe or a pharmaceutically acceptable salt thereof.
- B61 A method of medical treatment comprising administering to the patient the pharmaceutical composition of statement B40.
- B62 Use of a compound of any one of statements B1 to B38 in the manufacture of a medicament for use in therapy.
- B63 Use of a compound according to statement B62, wherein the medicament is for use in the treatment of a cardiovascular disease.
- B64 Use of a compound according to statement B63, wherein said treatment comprises the separate, sequential or simultaneous administration of i) said medicament comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof and ii) at least one additional active ingredient to a subject in need thereof.
- B66 A method of treating PCSK9-mediated disease or disorder in a patient in need thereof comprising administering to the patient a therapeutically effective amount of the compound or pharmaceutically acceptable salt thereof according to any one of statements B1 to B38 or the pharmaceutical composition according to statement B40.
- B67 The method according to statement B66, further comprising the separate, sequential or simultaneous administration of at least one additional active ingredient to a subject in need thereof.
- the method according to statement B67 further comprising administering to a subject in need thereof, a first amount of the compound of Formula (I), or a pharmaceutically acceptable salt thereof and a second amount of the at least one additional active ingredient, wherein the first amount and the second amount together comprise a therapeutically effective amount.
- B69. The method according to statement B68, wherein the at least one additional active ingredient may be selected from (a) a statin or pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof.
- B70 The method according to statement B69, wherein the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof.
- statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof.
- statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof.
- statin is selected from atorvastatin, rosuvastatin, lovastatin, pravastatin, simvastatin and fluvastatin; and pharmaceutically acceptable salts thereof.
- statin is rosuvastatin or a pharmaceutically acceptable salt thereof.
- B75 The method according to any one of statements B69 to B74, wherein the statin is administered in a moderate-intensity dosing.
- B76 The method according to any one of statements B69 to B74, wherein the statin or pharmaceutically acceptable salt thereof is administered in a high-intensity dosing.
- B83 The method according to any one of statements B66 to B82, wherein the disease or disorder is a cardiovascular disease or disorder.
- B84. The method according to statement B83, wherein the cardiovascular disease or disorder is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure or congestive heart failure.
- B85 The method according to statement B84, wherein the cardiovascular disease or disorder is dyslipidemia.
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Abstract
A compound with the Formula (I): A-B-C (I) or a pharmaceutically acceptable salt and tautomeric forms or stereoisomers thereof, wherein A is of one of the following formulae: (A1a), (A2a), (A2b), (A3a), (A3b), and (A4); B is of formula: (B-1); and C is of formula: (C-1a).
Description
PCSK9 Inhibitors and Methods of Use Thereof This application claims priority from European Patent Application No.24164963.1, filed March 20, 2024, the disclosure of which is incorporated by reference herein in its entirety. The present disclosure relates to compounds which inhibit PCSK9 and their use in methods of treatment. Background PCSK9, also referred to as “proprotein convertase subtilisin/kexin 9”, is a member of the secretory proprotein convertase family and plays an important role in cholesterol metabolism. PCSK9 increases the levels of circulating LDL cholesterol (LDL-C) via the enhanced degradation of the LDLRs independently of its catalytic activity. Secreted PCSK9 binds to the Epidermal Growth Factor domain A (EGFA) of the LDL receptor (LDLR) at the cell surface and the PCSK9/LDLR complex is internalized into endosomal/lysosomal compartments. The enhanced binding affinity of PCSK9 to the LDLR at the acidic pH of late endosomes/lysosomes reduces LDLR receptor recycling and instead targets LDLR for lysosomal degradation. Genetic association studies have demonstrated that loss-of-function mutations in PCSK9 are associated with low plasma LDL-C levels and a reduction in the incidence of adverse cardiovascular events. For cardiovascular disease, few options exist for inhibiting PCSK9. Statins actually upregulate PCSK9 in HepG2 cells and in human primary hepatocytes through the increased expression of SREBP-2, a transcription factor that upregulates both the LDLR and PCSK9 genes. Since an elevated level of PCSK9 decreases the abundance of LDLR on the cell surface, increasing doses of statins have failed to achieve proportional LDL-C lowering effects. Two monoclonal antibodies (mAbs) that bind selectively to extracellular PCSK9 and prevent its interaction with the LDLR, alirocumab and evolocumab, have recently received FDA approval for lowering LDL-C levels. In clinical trials, alirocumab showed an about 50% decrease in LDL levels compared to placebo (Elbitar 2016). Patients taking evolocumab showed an about 60- 75% decrease in LDL levels. The potency of these drugs demonstrates the potential for inhibitors of PCSK9 to be effective treatments for those with hypercholesterolemia and other cardiovascular diseases. However, both antibody drugs require intravenous administration and can cause allergic reactions or other deleterious immune responses in the body. Cardiovascular diseases often require management over a person’s lifetime, unlike an infection that could be episodic. Thus, ease of dosing and administration become important factors for
patient compliance with maintenance drug treatments. There is a need for PCSK9 inhibitors with increased efficacy and greater ease of administration, which can be achieved with small molecule PCSK9 inhibitors. WO 2020/150473 A2 relates to heteroaryl compounds and pharmaceutical preparations thereof. It also relates to methods of treating or preventing cardiovascular diseases, and methods of treating sepsis or septic shock, using the described novel heterocyclic compounds. WO 2020/15474 A1 relates to an inhibitor pharmacophore of PCSK9 and heteroaryl compounds that bind the PCSK9 protein. WO 2023/084449 A1 relates to diaminocyclopentylpyridine derivatives as modulators of PCKS9. Summary A first aspect there is provided a compound of Formula (I) A-B-C (I) or a pharmaceutically acceptable salt and tautomeric forms or stereoisomers thereof, wherein A is of one of the following formulae: (A1a)
wherein the wavy line indicates the point of attachment to B; X1 is N or C-RA3, RA1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN;
(iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH; RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl; (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl; (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon which is optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) NH2;
(x) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvii) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xviii) C1-6 sulfonimodyl; (xix) C1-6 alkyl phosphinyl; (xx) carboxy; (xxi) C(=O)NH2; (xxii) C1-6 alkyl ester; (xxiii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiv) C1-6 alkyl amido; or wherein RA3 and RA2 together with the carbon atoms to which they are bound form: (i) an optionally substituted C5-7 heterocycle ring; (ii) an optionally substituted C5-7 heteroaromatic ring; (iii) an optionally substituted C6 carboaromatic ring; (iv) an optionally substituted C5-7 carbocyclic ring wherein, when present, the one, two three or four optional substituents are independently selected from C1-6alkyl, halo, C1-6 alkoxy, NH2, C1-6 alkylamino, OH, and CN; (A2a)
wherein the wavy line indicates the point of attachment to B; Z1 is selected from O or S; RA5 is selected from the group consisting of: (i) H;
(ii) halo; (iii) CN; (iv) C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups; and (v) C1 alkoxy, optionally substituted by one or more halo groups; RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl; (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA7 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocyclyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2; (A2b)
wherein the wavy line indicates the point of attachment to B; Z6 is either N or C-H Z7 is either N or C-RA8. Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA8 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocycyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2; (A3a)
(A3b)
where RA9 is selected from H; methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1-methylcyclopropyl and 2-methylcyclopropyl; (A4)
where RA4 is selected from H, CN, -OCF2H, cyclopropyl, Cl, and methyl; wherein B is of formula
wherein the wavy line indicates the point of attachment to A and C; RB1 is -H, -OH, =CHCH2-OH, -C1-4 alkyl, or -C1-4 alkyl which -C1-4 alkyl is optionally substituted by OH or OMe; wherein C is of formula: (C-1a)
where X is hydrogen or fluorine;
where RN is H, methyl, or benzyl optionally substituted with a C1-3 alkoxy group; RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups; where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy; (vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; (ix) C1-6 alkyl acyl; and (x) oxo. A second aspect provides a pharmaceutical composition comprising the compound of the first aspect and a pharmaceutically acceptable diluent, carrier or excipient. The third aspect provides the compound of the first aspect for use in a method of therapy. The third aspect also provides the use of a compound of the first aspect in the manufacture of a medicament for treating a cardiovascular disease. The third aspect also provides a compound of the first aspect for use in the treatment of a cardiovascular disease. The third aspect also provides a method of treating a cardiovascular disease comprising administering a therapeutically effective amount of a compound of the first aspect or a composition according to the second aspect to a patient in need thereof. A fourth aspect provides a compound selected from the following compounds;
. This disclosure includes the combination of the aspects and preferred features described except where such a combination is clearly impermissible or expressly avoided. Description of the Figures Figure 1 shows the structure of the Mouse GalNAc ASO for in the vivo experiments of Assay 6. Detailed Description Aspects and embodiments will now be discussed. Further aspects and embodiments will be apparent to those skilled in the art. All documents mentioned in this text are incorporated herein by reference.
Compounds of Formula (I) and its use in the treatment of cardiovascular diseases are described herein. The compounds disclosed herein are PCSK9 inhibitors. The compounds may have higher inhibition of PCSK9, lower hERG activity, improved secondary pharmacology profile including GSK3β and/or other kinases, good stability, and/or improved activity in the treatment of cardiovascular diseases. The compounds may have an improved secondary pharmacology profile or an improved off-target profile. Definitions Substituents The phrase “optionally substituted” as used herein, pertains to a parent group which may be unsubstituted or which may be substituted. Unless otherwise specified, the term “substituted” as used herein, pertains to a parent group which bears one or more substituents. The term “substituent” is used herein in the conventional sense and refers to a chemical moiety which is covalently attached to, or if appropriate, fused to, a parent group. A wide variety of substituents are well known, and methods for their formation and introduction into a variety of parent groups are also well known. Examples of substituents are described in more detail below. Unless otherwise stated, halo is selected from chloro (Cl), fluoro (F), bromo (Br) and iodo (I). Cyano (nitrile, carbonitrile): -CN. Hydroxy: -OH. Oxo: =O (oxygen double bonded to the rest of the molecule). C1-6 hydrocarbon: The term “C1-6 hydrocarbon” as used herein pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 6 carbon atoms, which may be aliphatic or alicyclic, which may be saturated or unsaturated (e.g. partially unsaturated, fully unsaturated) and may also be branched. Thus, the term “hydrocarbon” includes the terms alkyl, alkenyl, alkynyl, cycloalkyl, etc., discussed below. C1-6 alkyl: The term “C1-6 alkyl” as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 6 carbon atoms, which are saturated and may also be branched. The term “C1-4 alkyl” as used
herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 4 carbon atoms, which are saturated. Examples of saturated alkyl groups include, but are not limited to, methyl (C1), ethyl (C2), propyl (C3), butyl (C4), pentyl (C5) and hexyl (C6). Examples of saturated linear alkyl groups include, but are not limited to, methyl (C1), ethyl (C2), n-propyl (C3), n-butyl (C4), n-pentyl (amyl) (C5) and n-hexyl (C6). Examples of saturated branched alkyl groups include isopropyl (C3), iso-butyl (C4), sec-butyl (C4), tert-butyl (C4), iso-pentyl (C5), and neopentyl (C5). C2-6 Alkenyl: The term “C2-6 alkenyl” as used herein, pertains to a hydrocarbon group having one or more carbon-carbon double bonds. Examples of unsaturated alkenyl groups include, but are not limited to, ethenyl (vinyl, - CH=CH2), 1-propenyl (-CH=CH-CH3), 2-propenyl (allyl, CHCH=CH2), iso-propenyl (1- methylvinyl, C(CH3)=CH2), butenyl (C4), pentenyl (C5), and hexenyl (C6). C2-6 alkynyl: The term “C2-6 alkynyl” as used herein, pertains to a hydrocarbon group having one or more carbon-carbon triple bonds. Examples of unsaturated alkynyl groups include, but are not limited to, ethynyl (-C≡CH) and 2- propynyl (propargyl, -CH2C≡CH). C1-6 alkoxy: The term C1-6 alkoxy as used herein, pertains to an OR group, wherein R is an C1-6 hydrocarbon group. Examples of C1-6 alkoxy groups include, but are not limited to, OMe, OEt (ethoxy), -O(nPr) (n-propoxy), -O(iPr) (iso-propoxy), O(nBu) (n-butoxy), O(sBu) (sec-butoxy), O(iBu) (iso-butoxy), and O(tBu) (tert-butoxy). C1-6 acyloxy: The term C1-6 acyloxy (reverse ester) as used herein, pertains to an OC(=O)R, wherein R is a C1-6 hydrocarbon group. Examples of acyloxy groups include, but are not limited to, OC(=O)CH3 (acetoxy), OC(=O)CH2CH3, or OC(=O)C(CH3)3. Amino: NR1R2, wherein R1 and R2 are independently amino substituents, for example, hydrogen, a C1-6 hydrocarbon group (also referred to as C1-6 alkylamino or C1-6 dialkylamino where both groups are a C1-6 hydrocarbon group), or, in the case of a “cyclic” amino group, R1 and R2, taken together with the nitrogen atom to which they are attached, form a heterocyclic
ring having from 4 to 6 ring atoms. Amino groups may be primary (-NH2), secondary (-NHR1), or tertiary (-NR1R2), and in cationic form, may be quaternary (-+NR1R2R3). Examples of amino groups include, but are not limited to NH2, NHCH3, NHCH(CH3)2, N(CH3)2, N(CH2CH3)2, and NHPh. Examples of cyclic amino groups include, but are not limited to, aziridino, azetidino, pyrrolidino, piperidino, piperazino, morpholino, and thiomorpholino. C1-6 acylamido: Acylamido (acylamino): NR1C(=O)R2, wherein R1 is an amide substituent, for example, hydrogen or a C1-6 hydrocarbon group, and R2 is an acyl substituent, for example, a C1-6 hydrocarbon group. Examples of acylamide groups include, but are not limited to, NHC(=O)CH3 and NHC(=O)CH2CH3. In some embodiments R1 and R2 may together form a cyclic or bicyclic structure and form a cyclic acylamido group. Examples of such groups include succinimidyl, maleimidyl, phthalimidyl, 2-oxo-3H-benzimidazol-1-yl, 3-methyl-2-oxo- benzimidazol-1-yl, 1-methyl-2-oxoimidazo[4,5-b]pyridin-3-yl, 2,5-dioxoimidazolidin-1-yl and 2,4- dioxoimidazolidin-1-yl:
Carbaimidoyl: -C(=NH)NH2. Methyl-carbaimidoyl: -C(=N-CH3)NH2.
Carboxyamino: -N(H)(C(=O)OH). C1-6 thioalkyl: The term C1-6 thioalkyl as used herein, pertains to an SR, wherein R is a C1-6 hydrocarbon group. Examples of C1-6 alkylthio groups include, but are not limited to, SCH3 and SCH2CH3. C1-6 alkyl sulfinyl: The term C1-6 alkyl sulfinyl pertains to a sulfine (sulfinyl, sulfoxide) which has the structure S(=O)R-, wherein R is a C1--6 hydrocarbon group. Examples of C1-6 alkyl sulfinyl groups include, but are not limited to, S(=O)CH3 and S(=O)CH2CH3. C1-6 alkyl sulfonyl: The term C1-6 alkyl sulfonyl as used herein pertains to an -S(=O)2R, group wherein R is a C1--6 hydrocarbon group, including, for example, a fluorinated or perfluorinated C1--6 alkyl group. Examples of C1-6 alkyl sulfonyl groups include, but are not limited to, -S(=O)2CH3 (methanesulfonyl, mesyl), -S(=O)2CF3 (triflyl), -S(=O)2CH2CH3 (esyl), -S(=O)2C4F9 (nonaflyl) and -S(=O)2CH2CF3 (tresyl). C1-6 sulfonimodyl: The term C1-6 sulfonimodyl is also referred to as Sulfonamido (sulfinamoyl; sulfonic acid amide; sulfonamide or di-C1-6 alkyl sulfonamido) and has the structure S(=O)2NR1R2, wherein R1 and R2 are independently amino substituents, as defined for amino groups. Examples of sulfonamido groups include, but are not limited to, -S(=O)2NH2, - S(=O)2NH(CH3), -S(=O)2N(CH3)2, -S(=O)2NH(CH2CH3) and -S(=O)2N(CH2CH3)2. Sulfonamino: NR1S(=O)2R, wherein R1 is an amino substituent, as defined for amino groups, and R is a sulfonamino substituent, for example, a C1-6 alkyl group, a C3-20 heterocyclyl group, or a C5-20 aryl group, preferably a C1-6 alkyl group. Examples of sulfonamino groups include, but are not limited to, NHS(=O)2CH3 and N(CH3)S(=O)2C6H5. C1-6 alkyl phosphinyl: The term C1-6 alkyl phosphinyl (phosphine oxide) has the structure - P(=O)R2, wherein each R is independently a C1-6 hydrocarbon group. Examples of C1-6 alkyl phosphinyl groups include, but are not limited to, P(=O)Me2, P(=O)(CH2CH3)2 and P(=O)(tBu)2. Wherein each R group can be the same or different groups. C1-6 alkyl phosphonyl: The term C1-6 alkyl phosphonyl has the structure -P(=O)2R, wherein R is a C1-6 hydrocarbon group. Examples of C1-6 alkyl phosphonyl groups include, but are not limited to, P(=O)2(CH3), P(=O)2(CH2CH3) and P(=O)2(tBu). Carboxy (carboxylic acid): -C(=O)OH.
C1-6 alkyl ester: The term C1-6 alkyl ester (carboxylate, carboxylic acid ester, oxycarbonyl) has the structure C(=O)OR, wherein R is a C1-6 hydrocarbon group. Examples of ester groups include, but are not limited to, C(=O)OCH3, C(=O)OCH2CH3 and C(=O)OC(CH3)3. C1-6 alkyl acyl: The term C1-6 alkyl acyl also known as Acyl (keto) has the structure C(=O)R, wherein R is a C1-6 hydrocarbon group. Examples of C1-6 alkyl acyl groups include, but are not limited to, C(=O)CH3 (acetyl), C(=O)CH2CH3 (propionyl) or C(=O)C(CH3)3 (tert-butyryl). C1-6 alkyl amido: The term C1-6 alkyl amido (also referred to as carbamoyl, carbamyl, aminocarbonyl, carboxamide) has the structure C(=O)NR1R2, wherein R1 and R2 are independently amino substituents, as defined for amino groups for example, hydrogen, a C1-6 hydrocarbon group (also referred to as C1-6 alkyl amido or C1-6 dialkyl amido), or, in the case of a “cyclic” amido group, R1 and R2, taken together with the nitrogen atom to which they are attached, form a heterocyclic ring having from 4 to 6 ring atoms. Examples of amido groups include, but are not limited to, C(=O)NH2, C(=O)NHCH3, C(=O)N(CH3)2, C(=O)NHCH2CH3, and C(=O)N(CH2CH3)2, as well as amido groups in which R1 and R2, together with the nitrogen atom to which they are attached, form a heterocyclic structure as in, for example, piperidinocarbonyl, morpholinocarbonyl, thiomorpholinocarbonyl, and piperazinocarbonyl. C3-12 cycloalkyl: The term “C3-12 cycloalkyl” as used herein, pertains to an alkyl group which is also a cyclyl group; that is, a monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a cyclic hydrocarbon (carbocyclic) compound, which moiety has from 3 to 7 carbon atoms, including from 3 to 7 ring atoms. The carbocyclic ring may be saturated or unsaturated and may be bridged or unbridged. The ring may be a fused ring or a single ring. Examples of cycloalkyl groups include, but are not limited to, those derived from: saturated monocyclic hydrocarbon compounds: cyclopropane (C3), cyclobutane (C4), cyclopentane (C5), cyclohexane (C6), cycloheptane (C7), methylcyclopropane (C4), dimethylcyclopropane (C5), methylcyclobutane (C5), dimethylcyclobutane (C6), methylcyclopentane (C6), dimethylcyclopentane (C7) and methylcyclohexane (C7); unsaturated monocyclic hydrocarbon compounds: cyclopropene (C3), cyclobutene (C4), cyclopentene (C5), cyclohexene (C6), methylcyclopropene (C4), dimethylcyclopropene (C5), methylcyclobutene (C5), dimethylcyclobutene (C6), methylcyclopentene (C6), dimethylcyclopentene (C7) and methylcyclohexene (C7); and saturated polycyclic hydrocarbon compounds:
norcarane (C7), norpinane (C7), norbornane (C7). C3-10 heterocyclyl: The term “C3-10 heterocyclyl” as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 3 to 10 ring atoms, of which from 1 to 5 are ring heteroatoms. In certain embodiments, each ring has from 3 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms. The ring may be saturated or unsaturated, and may be bridged or unbridged. The ring may be a fused ring or a single ring. For the avoidance of doubt, substituents on the heterocyclyl ring may be linked via either a carbon atom or a heteroatom. In this context the term ‘heteroatom’ means O, S, N, Si or B (Boron). More commonly in a pharmaceutical context, the term ‘heteroatom’ means O, S or N. In this context, the prefixes (e.g. C3-10 C3-7, C5-6, etc.) denote the number of ring atoms, or range of number of ring atoms, whether carbon atoms or heteroatoms. For example, the term “C5-6 heterocyclyl”, as used herein, pertains to a heterocyclyl group having 5 or 6 ring atoms. Examples of monocyclic heterocyclyl groups include, but are not limited to, those derived from: N1: aziridine (C3), azetidine (C4), pyrrolidine (tetrahydropyrrole) (C5), pyrroline (e.g.2,5-dihydro- 1H-pyrrole) (C5), 2H-pyrrole or 3H-pyrrole, isoazole (C5), piperidine (C6), dihydropyridine (C6), tetrahydropyridine (C6), azepine (C7); O1: oxirane (C3), oxetane (C4), oxolane (tetrahydrofuran) (C5), oxole (dihydrofuran) (C5), oxane (tetrahydropyran) (C6), dihydropyran (C6), pyran (C6), oxepin (C7); S1: thiirane (C3), thietane (C4), thiolane (tetrahydrothiophene) (C5), thiane (tetrahydrothiopyran) (C6), thiepane (C7); O2: dioxolane (C5), dioxane (C6), and dioxepane (C7); O3: trioxane (C6); N2: imidazolidine (C5), pyrazolidine (diazolidine) (C5), imidazoline (C5), pyrazoline (dihydropyrazole) (C5), piperazine (C6); N1O1: tetrahydrooxazole (C5), dihydrooxazole (C5), tetrahydroisoxazole (C5), dihydroisoxazole (C5), morpholine (C6), tetrahydrooxazine (C6), dihydrooxazine (C6), oxazine (C6); N1S1: thiazoline (C5), thiazolidine (C5), thiomorpholine (C6); N2O1: oxadiazine (C6); O1S1: oxathiole (C5) and oxathiane (thioxane) (C6); and, N1O1S1: oxathiazine (C6). Examples of bicyclic heterocyclyl groups include, but are not limited to those derived from:
Compound Structure Compound Structure 7-azabicyclo[4.2.0]octane 3-azabicyclo[3.1.0]hexane (N1) C8 (N1) C6 6-azabicyclo[3.2.0]heptane 2,3,3a,4,5,6,7,7a- (N1) C7 octahydrofuro[2,3- c]pyridine (N1O1) C9 C6-10 carboaryl: The term “C6-10 carboaryl”, as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 6 to 10 ring atoms and the ring atoms are all carbon atoms, as in “carboaryl groups”. The ring may be a fused ring or a single ring. Examples of carboaryl groups include, but are not limited to, those derived from benzene (i.e. phenyl) (C6), naphthalene (C10) and azulene (C10). In this context, the prefixes (e.g. C5-7, C5-6, C5-10, etc.) denote the number of ring atoms, or range of number of ring atoms. For example, the term “C5-6 aryl” as used herein, pertains to an aryl group having 5 or 6 ring atoms. Examples of carboaryl groups which comprise fused rings, at least one of which is an aromatic ring, include, but are not limited to, groups derived from indane (e.g.2,3-dihydro-1H-indene) (C9), indene (C9), isoindene (C9) and tetraline (1,2,3,4-tetrahydronaphthalene) (C10). C5-10 heteroaryl: The term “C5-10 heteroaryl”, as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 5 to 10 ring atoms of which from 1 to 5 are ring heteroatoms. In certain embodiments, each ring has from 5 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms. For the avoidance of doubt, substituents on the heteroaryl ring may be linked via either a carbon atom or a heteroatom. The ring may be a fused ring or a single ring. In this context the term ‘heteroatom’ means O, S, N, Si or B (Boron). More commonly in a pharmaceutical context, the term ‘heteroatom’ means O, S or N. Examples of monocyclic heteroaryl groups include, but are not limited to, those derived from:
N1: pyrrole (azole) (C5), pyridine (azine) (C6); O1: furan (oxole) (C5); S1: thiophene (thiole) (C5); N1O1: oxazole (C5), isoxazole (C5), isoxazine (C6); N2O1: oxadiazole (furazan) (C5); N3O1: oxatriazole (C5); N1S1: thiazole (C5), isothiazole (C5); N2: 1H-imidazole (1,3-diazole) (C5), 1H-pyrazole (1,2-diazole) (C5), pyridazine (1,2-diazine) (C6), pyrimidine (1,3-diazine) (C6) (e.g., cytosine, thymine, uracil), pyrazine (1,4-diazine) (C6); N3: triazole (C5), triazine (C6); and, N4: tetrazole (C5). Examples of heteroaryl which comprise fused rings, include, but are not limited to C9 heteroaryl (with 2 fused rings) derived from:
Examples of heteroaryl which comprise fused rings, include, but are not limited to C10 heteroaryl (with 2 fused rings) derived from: Examples of heteroaryl or heterocyclic compounds include but are not limited to those derived from: Spiro C6-12 carbocyclyl: The term Spiro C6-12 carbocyclyl as used herein pertains to a moiety that has at least two molecular rings with only one common atom. The simplest spiro compounds
are bicyclic (having just two rings), or have a bicyclic portion as part of the larger ring system, in either case with the two rings connected through the defining single common atom. Spiro C6-12 carbocyclyl pertains to a cyclyl group; that is, a monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a cyclic hydrocarbon (carbocyclic) compound, which moiety has from 6 to 12 carbon atoms, including from 3 to 7 ring atoms wherein the rings share a common atom. Spiro C6-12 heterocyclyl: The term Spiro C6-12 heterocyclyl as used herein pertains to a moiety that has at least two molecular rings with only one common atom. The simplest spiro compounds are bicyclic (having just two rings), or have a bicyclic portion as part of the larger ring system, in either case with the two rings connected through the defining single common atom. The spiro C6-12 heterocyclyl moiety pertains to a monovalent moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 8 to 12 ring atoms of which from 1 to 3 are ring heteroatoms wherein the rings share a common atom. In certain embodiments, each ring has from 9 to 11 ring atoms, of which from 1 to 2 are ring heteroatoms. For the avoidance of doubt, substituents on the heteroaryl ring may be linked via either a carbon atom or a heteroatom. For the avoidance of doubt, where multiple substituents are independently selected from a given group, the selected substituents may comprise the same substituents or different substituents from within the given group. Pharmaceutically acceptable salt The term “pharmaceutically acceptable” is used to specify that an object (for example a salt, dosage form or excipient) is suitable for use in patients. An example list of pharmaceutically acceptable salts can be found in the Handbook of Pharmaceutical Salts: Properties, Selection and Use, P. H. Stahl and C. G. Wermuth, editors, Weinheim/Zürich: Wiley-VCH/VHCA, 2002. A suitable pharmaceutically acceptable salt of a compound of Formula (I) is, for example, an acid addition salt. An acid addition salt of a compound of Formula (I) may be formed by bringing the compound into contact with a suitable inorganic or organic acid under conditions known to the skilled person. An acid addition salt may for example be formed using an inorganic acid selected from the group consisting of hydrochloric acid, hydrobromic acid, sulphuric acid and phosphoric acid. An acid addition salt may also be formed using an organic acid selected from the group consisting of trifluoroacetic acid, citric acid, maleic acid, oxalic acid, acetic acid, formic acid, benzoic acid, fumaric acid, succinic acid, tartaric acid, lactic acid, pyruvic acid, methanesulfonic acid, benzenesulfonic acid and para-toluenesulfonic acid.
Another suitable pharmaceutically acceptable salt of a compound of Formula (I) is, for example, a base addition salt. A base addition salt of a compound of Formula (I) may be formed by bringing the compound into contact with a suitable inorganic or organic base under conditions known to the skilled person. A base addition salt may for example be formed using an inorganic base selected from the group consisting of lithium hydroxide, sodium hydroxide, potassium hydroxide, magnesium hydroxide and calcium hydroxide. A base addition salt may also be formed using an organic base selected from the group consisting of L-arginine, choline, L- lysine, t-butylamine, ethylenediamine, ammonia, dimethylaminoethanol, N-methylglucamine, tromethamine and hydroxyethylmorpholine. Therefore, in one embodiment there is provided a compound of Formula (I) or a pharmaceutically acceptable salt thereof, where the pharmaceutically acceptable salt is a hydrochloric acid, hydrobromic acid, sulphuric acid, phosphoric acid, trifluoroacetic acid, citric acid, maleic acid, oxalic acid, acetic acid, formic acid, benzoic acid, fumaric acid, succinic acid, tartaric acid, lactic acid, pyruvic acid, methanesulfonic acid, benzenesulfonic acid or para- toluenesulfonic acid salt. Therefore, in another embodiment there is provided a compound of Formula (I) or a pharmaceutically acceptable salt thereof, where the pharmaceutically acceptable salt is a lithium salt, sodium salt, potassium salt, magnesium salt, calcium salt, L-arginine salt, choline salt, L-lysine salt, t-butylamine salt, ethylenediamine salt, ammonia salt, dimethylaminoethanol salt, N-methylglucamine salt, tromethamine salt or hydroxyethylmorpholine salt. Other forms Compounds and salts described in this specification may exist in solvated forms and unsolvated forms. For example, a solvated form may be a hydrated form, such as a hemihydrate, a monohydrate, a dihydrate, a trihydrate or an alternative quantity thereof. The compounds of Formula (I) encompass all such solvated and unsolvated forms of compounds of Formula (I), particularly to the extent that such forms possess PCSK9 inhibitory activity, as for example measured using the tests described herein. Compounds and salts described in this specification include one or more chiral (i.e. asymmetric) centres. To the extent a structure or chemical name in this specification does not indicate the chirality, the structure or name is intended to encompass any single stereoisomer (i.e. any single chiral isomer) corresponding to that structure or name, as well as any mixture of stereoisomers (e.g. a racemate). In some embodiments, a single stereoisomer is obtained by isolating it from a mixture of isomers (e.g. a racemate) using, for example, chiral
chromatographic separation. In other embodiments, a single stereoisomer is obtained through direct synthesis from, for example, a chiral starting material. A particular enantiomer of a compound described herein may be more active than other enantiomers of the same compound. According to one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, which is a single enantiomer being in an enantiomeric excess (%ee) of ≥ 95, ≥ 98% or ≥ 99%. Conveniently, the single enantiomer is present in an enantiomeric excess (%ee) of ≥ 99%. According to another embodiment there is provided a pharmaceutical composition, which comprises a compound of Formula (I), which is a single enantiomer being in an enantiomeric excess (%ee) of ≥ 95, ≥ 98% or ≥ 99% or a pharmaceutically acceptable salt thereof, in association with one or more pharmaceutically acceptable excipients. Conveniently, the single enantiomer is present in an enantiomeric excess (%ee) of ≥ 99%. Isotopes Atoms of the compounds and salts described in this specification may exist as their isotopes. The compound of Formula (I) encompasses all compounds of Formula (I) where an atom is replaced by one or more of its isotopes (for example a compound of Formula (I) where one or more carbon atom is an 11C or 13C carbon isotope, or where one or more hydrogen atoms is a 2H or 3H isotope). Tautomers Compounds and salts described in this specification may exist as a mixture of tautomers. “Tautomers” are structural isomers that exist in equilibrium resulting from the migration of a hydrogen atom. The compound of Formula (I) includes all tautomers of compounds of Formula (I) particularly to the extent that such tautomers possess PCSK9 inhibitory activity. Therapy, prophylaxis and related terms The term “therapy” is intended to have its normal meaning of dealing with a disease in order to entirely or partially relieve one, some or all of its symptoms, or to correct or compensate for the underlying pathology. The term "therapy" also includes "prophylaxis" unless there are specific indications to the contrary. The terms "therapeutic" and "therapeutically" should be interpreted in a corresponding manner.
The term “prophylaxis” is intended to have its normal meaning and includes primary prophylaxis to prevent the development of the disease and secondary prophylaxis whereby the disease has already developed and the patient is temporarily or permanently protected against exacerbation or worsening of the disease or the development of new symptoms associated with the disease. The term “treatment” is used synonymously with “therapy”. Similarly the term “treat” can be regarded as “applying therapy” where “therapy” is as defined herein. The term "subject" to which administration is contemplated includes, but is not limited to, humans (i.e., a male or female of any age group, e.g., a paediatric subject (e.g., infant, child, adolescent) or adult subject (e.g., young adult, middle-aged adult or senior adult)) and/or other primates (e.g., cynomolgus monkeys, rhesus monkeys); mammals, including commercially relevant mammals such as cattle, pigs, horses, sheep, goats, cats, and/or dogs; and/or birds, including commercially relevant birds such as chickens, ducks, geese, quail, and/or turkeys. Preferred subjects are humans. An “effective amount”, as used herein, refers to an amount that is sufficient to achieve a desired biological effect. A “therapeutically effective amount”, as used herein refers to an amount that is sufficient to achieve a desired therapeutic effect. For example, a therapeutically effective amount can refer to an amount that is sufficient to improve at least one sign or symptom of the disease to be treated. Pharmaceutical compositions The compounds of Formula (I), and pharmaceutically acceptable salts thereof, may be administered as pharmaceutical compositions, comprising one or more pharmaceutically acceptable excipients. Therefore, in one embodiment there is provided a pharmaceutical composition comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient. The excipient(s) selected for inclusion in a particular composition will depend on factors such as the mode of administration and the form of the composition provided. Suitable pharmaceutically acceptable excipients are well known to persons skilled in the art and are described, for example, in the Handbook of Pharmaceutical Excipients, Sixth edition, Pharmaceutical Press, edited by Rowe, Ray C; Sheskey, Paul J; Quinn, Marian. Pharmaceutically acceptable excipients may function as, for example, adjuvants, diluents, carriers, stabilisers, flavourings, colorants, fillers, binders, disintegrants, lubricants, glidants, thickening agents and coating
agents. As persons skilled in the art will appreciate, certain pharmaceutically acceptable excipients may serve more than one function and may serve alternative functions depending on how much of the excipient is present in the composition and what other excipients are present in the composition. The pharmaceutical compositions may be in a form suitable for oral use (for example as tablets, lozenges, hard or soft capsules, aqueous or oily suspensions, emulsions, dispersible powders or granules, syrups or elixirs), for topical use (for example as creams, ointments, gels, or aqueous or oily solutions or suspensions), for administration by inhalation (for example as a finely divided powder or a liquid aerosol), for administration by insufflation (for example as a finely divided powder) or for parenteral administration (for example as a sterile aqueous or oily solution for intravenous, subcutaneous or intramuscular dosing), or as a suppository for rectal dosing. The compositions may be obtained by conventional procedures well known in the art. Compositions intended for oral use may contain additional components, for example, one or more colouring, sweetening, flavouring and/or preservative agents. Suitable daily doses of the compounds disclosed herein, or a pharmaceutically acceptable salt thereof, in therapeutic treatment of humans are about 0.0001-100 mg/kg body weight. Pharmaceutical formulations as described herein may be formulated by methods known to those skilled in the art to provide doses of the active compound in the range of 0.1 mg to 1000 mg. The daily dose will necessarily be varied depending upon the host treated, the particular route of administration, any therapies being co-administered, and the severity of the illness being treated. Accordingly, the practitioner who is treating any particular patient may determine the optimum dosage. The pharmaceutical compositions described herein comprise compounds of Formula (I), or a pharmaceutically acceptable salt thereof, and are therefore expected to be useful in therapy. As such, in one embodiment there is provided a pharmaceutical composition for use in therapy, comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient. In one embodiment there is provided a pharmaceutical composition for use in the treatment of a disease in which inhibition of PCSK9 is beneficial, comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient. In one embodiment there is provided a pharmaceutical composition for use in the treatment of a cardiovascular disease, comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable
excipient. In one embodiment there is provided a pharmaceutical composition for use in the treatment of a cardiovascular disease in which inhibition of PCSK9 is beneficial, comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient. Methods of Use The compounds described herein may be used in a method of therapy. Also provided is a method of treatment, comprising administering to a subject in need of treatment a therapeutically effective amount of a compound of Formula (I). The term “therapeutically effective amount” is an amount sufficient to show benefit to a patient. Such benefit may be at least amelioration of at least one symptom. The actual amount administered, and rate and time- course of administration, will depend on the nature and severity of what is being treated. Prescription of treatment, e.g. decisions on dosage, is within the responsibility of general practitioners and other medical doctors. A compound may be administered alone or in combination with other treatments, either simultaneously or sequentially dependent upon the condition to be treated. In one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising the compound of Formula (I) for use in therapy. In one embodiment there is provided the use of the compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising the compound of Formula (I) for the manufacture of a medicament. In another embodiment there is provided a method of treatment comprising administering to a subject the compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising the compound of Formula (I). The compounds described herein are PCSK9 inhibitors. The PCSK9 gene was identified using genetic mapping techniques on DNA from subjects with autosomal dominant hypercholesterolemia (Abifadel 2003). The encoded protein is a serine protease that is mostly expressed in the liver, gut, kidney, and nervous system and circulates in plasma. While not wishing to be bound by any particular theory, studies on mutations in the gene indicated that its putative role was in reducing LDLR at the cell surface independently of its catalytic activity (Abifadel 2010). Binding of PCSK9 to the LDLR results in their lysosomal degradation. This enhanced LDLR degradation results in increases in the amount of circulating low-density lipoprotein (LDL). PCSK9 is upregulated by statins, SREBP-1a and SREBP-2, LXR agonist, and insulin, but downregulated by dietary cholesterol, glucagon, ethinylestradiol, chenodeoxycholic acid and the bile acid-activated farnesoid X receptor (FXR) (Maxwell 2003; Persson 2009;
Langhi 2008). Since an elevated level of PCSK9 decreases the abundance of LDLR on the cell surface, increasing doses of statins fail to achieve proportional LDL-C lowering results. Thus, disclosed herein are methods for treating a wide range of cardiovascular diseases and conditions that benefit from inhibiting PCSK9 thereby lowering LDL-C. In certain embodiments, the method of inhibiting PCSK9 occurs in a subject in need thereof, thereby treating a disease or disorder mediated by PCSK9. Also, disclosed herein are methods of treating or preventing a disease or a disorder mediated by PCSK9 comprising administering a compound of Formula (I) or a pharmaceutically acceptable salt thereof. In certain embodiments, disclosed herein are methods of treating a disease or a disorder mediated by PCSK9 comprising administering a compound of Formula (I) or a pharmaceutically acceptable salt thereof. In certain embodiments, disclosed herein are methods of preventing a disease or a disorder mediated by PCSK9 comprising administering a compound of Formula (I) or a pharmaceutically acceptable salt thereof. The prevention of cardiovascular events through the inhibition of PCSK9 has been described, e.g., in Robinson 2015. In some embodiments there is provided a method of treating a cardiovascular disease comprising administering to a subject a compound of Formula (I), or a pharmaceutical composition comprising a compound of Formula (I). In some embodiments there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for use in the treatment of a cardiovascular disease. In some embodiments there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for the manufacture of a medicament for the treatment of a cardiovascular disease. Exemplary cardiovascular diseases and conditions include, but are not limited to, dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease, heart failure or congestive heart failure. In certain embodiments, exemplary cardiovascular diseases and conditions include, but are not limited to, hypercholesterolemia, hyperlipidemia, hyperlipoproteinemia, hypertriglyceridemia, dyslipidemia, dyslipoproteinemia, atherosclerosis, hepatic steatosis, metabolic syndrome and coronary artery disease. In certain embodiments, the disease is hypercholesterolemia, such as familial hypercholesterolemia or autosomal dominant hypercholesterolemia. In certain embodiments, the disease is hyperlipidemia. In certain embodiments, the disease is coronary artery disease.
In certain embodiments, the disclosed methods of treatment can decrease high levels of circulating serum cholesterol, such as LDL-C and VLDL-Cholesterol. In addition, the disclosed methods are useful for decreasing circulating serum triglycerides, circulating serum lipoprotein A, circulating serum LDL-C and atherogenic lipoproteins. In certain embodiments, the diseases or conditions treated with the disclosed compounds and compositions include atherosclerosis and atherosclerotic plaque formation. Subjects having a gain-of-function mutation in the PCSK9 gene also benefit with treatment with the disclosed compounds and compositions counteracting the mutation through their inhibition of PCSK9. In some embodiments there is provided a method of treating a kidney disease comprising administering to a subject a compound of Formula (I), or a pharmaceutical composition comprising a compound of Formula (I). In some embodiments there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for use in the treatment of a kidney disease. In some embodiments there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a compound of Formula (I) for the manufacture of a medicament for the treatment of a kidney disease. In some embodiments the kidney disease is a chronic kidney disease. Combination treatments Disclosed compounds and compositions may be conjointly administered with other therapeutic agents, such as other agents suitable for the treatment of high levels of LDL-C and triglycerides. In certain embodiments, conjointly administering one or more additional therapeutic agents with a compound described herein provides a synergistic effect. In certain embodiments, conjointly administering one or more additional therapeutic agents provides an additive effect. In some embodiments in which a combination therapy is used, the amount of the compound or salt described in this specification and the amount of the other pharmaceutically active agent(s) are, when combined, therapeutically effective to treat a targeted disorder in the animal patient. In this context, the combined amounts are “therapeutically effective amounts” if they are, when combined, sufficient to reduce or completely alleviate symptoms or other detrimental effects of the disorder; cure the disorder; reverse, completely stop, or slow the progress of the disorder; or reduce the risk of the disorder getting worse. Typically, such amounts may be determined by one skilled in the art by, for example, starting with the dosage range described in this specification for the compound or salt and an approved or otherwise published dosage range(s) of the other pharmaceutically active compound(s).
A pharmaceutical composition of the specification may comprise one or more further active ingredients, as appropriate, examples of combinations of a compound of the specification (or a pharmaceutically acceptable salt thereof) and one or more additional active ingredients are described herein. The specification further relates to a combination therapy wherein a compound of the specification, or a pharmaceutically acceptable salt thereof, and a second active ingredient are administered concurrently, sequentially or in admixture, for the treatment of one or more of the conditions listed above. Such a combination may be used in combination with one or more further active ingredients. In one aspect there is provided a combination (for example, for use as a medicament for the treatment of one of the diseases or conditions listed herein, such as a cardiovascular disease) comprising a compound of the specification, or a pharmaceutically acceptable salt thereof, and at least one active ingredient selected from: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) an ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs. In a further aspect of the present specification there is provided a pharmaceutical composition (for example, for use as a medicament for the treatment of one of the diseases or conditions listed herein, such as a cardiovascular disease) comprising a compound of the specification, or a pharmaceutically acceptable salt thereof, and at least one active ingredient selected from: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) an ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs. In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from a statin, wherein the statin is selected from Atorvastatin, Fluvastatin, Lovastatin, Mevastatin, Pitavastatin, Pravastatin, Rosuvastatin and Simvastatin. In another aspect the statin is Rosuvastatin (Crestor).
In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from a cholesterol absorption inhibitor, wherein the cholesterol absorption inhibitor is selected from Ezetimibe (Ezetrol). In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from a SGLT2 inhibitor, wherein the SGLT2 inhibitor is selected from Canagliflozin, Dapagliflozin, Empagliflozin, Ertugliflozin, Ipragliflozin, Luseogliflozin, Remogliflozin etabonate, Sergliflozin etabonate, Sotagliflozin or Tofogliflozin. In some aspects the SGLT2 inhibitor is selected from Dapagliflozin (Farxiga or Forxiga). In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from a P2Y12 inhibitor, wherein the P2Y12 inhibitor is selected from Brilinta (Ticagrelor) and Clopidogrel (Plavix). In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from an ATP- citrate lyase inhibitor, wherein the ATP-citrate lyase inhibitor is Bempedoic acid (Nexletol). In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from Ezetimibe, Rosuvastatin, Dapagliflozin and Ticagrelor. In one embodiment there is one additional active ingredient. In another embodiment there are two additional active ingredients. In one embodiment the additional active ingredient is Ezetimibe, Rosuvastatin, Dapagliflozin or Ticagrelor. In another embodiment the additional two active ingredients are Ezetimibe and Rosuvastatin or Dapagliflozin and Rosuvastatin. In another embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient selected from anti- hypertensive drugs. In some aspects, the antihypertensive drug is selected from Valsartan (Diovan), Metoprolol (Lopressor), HCTZ (Hydrochlorothiazide), Olmesartan (Benicar), Lisinopril (Prinivil, Zestril), Amlodipine besylate (Norvasc), Candesartan, or a calcium channel blocker or a combination thereof. In another aspect there is provided the compound of Formula (I) or a pharmaceutically acceptable salt thereof in combination with: i) Valsartan;
ii) Metoprolol; iii) Valsartan and HCTZ; iv) Olmesartan; v) Olmesartan and HCTZ; vi) Lisinopril; vii) Amlodipine; viii) Candesartan; ix) a calcium channel blocker; or x) HCTZ. In one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, and at least one additional active ingredient for use in the simultaneous, separate or sequential treatment of a cardiovascular disease. In one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof, for use in the treatment of a cardiovascular disease, where the compound of Formula (I), or a pharmaceutically acceptable salt thereof, is administered simultaneously, separately or sequentially with at least one an additional active substance selected from Ezetimibe, Rosuvastatin, Dapagliflozin and Ticagrelor. In another embodiment there is provided a method of treating a cardiovascular disease in a subject, which comprises administering to said subject a compound of Formula (I) or a pharmaceutically acceptable salt thereof, and simultaneously, separately or sequentially administering at least one additional active substance, wherein the at least one additional active substance is selected from Ezetimibe, Rosuvastatin, Dapagliflozin and Ticagrelor. In one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof for use in the treatment of a cardiovascular disease in a subject, wherein said treatment comprises the separate, sequential or simultaneous administration of i) said compound of Formula (I) or a pharmaceutically acceptable salt thereof, and ii) at least one additional active ingredient to said subject. In one embodiment there is provided a method of treatment of a cardiovascular disease, comprising administering to a subject in need thereof, a first amount of a compound of Formula (I), or a pharmaceutically acceptable salt thereof and a second amount of at least one additional active ingredient, wherein the first amount and the second amount together comprise a therapeutically effective amount.
In one embodiment there is provided a compound of Formula (I), or a pharmaceutically acceptable salt thereof in the manufacture of a medicament for use in the treatment of a cardiovascular disease wherein said treatment comprises the separate, sequential or simultaneous administration of i) said medicament comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof and ii) at least one additional active ingredient to said subject. In the above embodiments, the at least one additional active ingredient may be selected from (a) a statin or pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof. Thus, in some embodiments the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof. In some embodiments the at least one additional active ingredient is ezetimibe or a pharmaceutically acceptable salt thereof. In some embodiments the at least one additional active ingredient is bempedoic acid or a pharmaceutically acceptable salt thereof. In some embodiments the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof and ezetimibe or a pharmaceutically acceptable salt thereof. Statins Statins include atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof. US4231938 discloses certain compounds isolated after cultivation of a microorganism belonging to the genus Aspergillus, such as lovastatin. Also, US4444784 discloses synthetic derivatives of the aforementioned compounds, such as simvastatin. Also, US4739073 discloses certain substituted indoles, such as fluvastatin. Also, US4346227 discloses ML-236B derivatives, such as pravastatin. Also, EP0491226A and US5502199 disclose certain pyridyldihydroxyheptenoic acids, such as cerivastatin. In addition, US5273995 discloses certain 6-[2-(substituted-pyrrol-1-yl)alkyl]pyran-2-ones such as atorvastatin and any pharmaceutically acceptable form thereof (i.e. LIPITOR®). Atorvastatin calcium (i.e., atorvastatin hemicalcium), disclosed in US5273995 is currently sold as Lipitor®. US RE37,314 E discloses rosuvastatin and rosuvastatin calcium. EP0304063 and US5011930 disclose pitivastatin. US3983140 discloses mevastatin. US4448784 and US4450171 disclose velostatin. US4804770 discloses compactin. EP0738510A2 discloses dalvastatin. EP0363934A1 discloses fluindostatin. US4450171 discloses dihydrocompactin.
In some embodiments, the statin is selected from atorvastatin, rosuvastatin, lovastatin, pravastatin, simvastatin and fluvastatin; and pharmaceutically acceptable salts thereof. In some embodiments, the statin is rosuvastatin or a pharmaceutically acceptable salt thereof. In some of these embodiments, the statin is rosuvastatin or rosuvastatin calcium. Dosing levels In some embodiments, the statin dosing regimen is a moderate-intensity dosing according to the ACC (American College of Cardiology)/AHA (American Heart Association) (Grundy 2018). This moderate-intensity dosing may be: Dosing regimen Atorvastatin 10 to 20 mg once daily Fluvastatin 40 mg twice daily; or 80 mg once daily Lovastatin 40 to 80 mg once daily Pitavastatin 1 to 4 mg once daily Pravastatin 40 to 80 mg once daily Rosuvastatin 5 to 10 mg once daily Simvastatin 20 to 40 mg once daily The rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form. The atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form. The pravastatin may be dosed as pravastatin calcium, where the dose given is calculated as pravastatin in its free form. The pitavastatin may be dosed as pitavastatin calcium, where the dose given is calculated as pitavastatin in its free form. In some embodiments, the statin dosing regimen is a high-intensity dosing according to the ACC (American College of Cardiology)/AHA (American Heart Association) (Grundy 2018). This high-intensity dosing may be:
Dosing regimen Atorvastatin 40 to 80 mg once daily Rosuvastatin 20 to 40 mg once daily As above, the rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form. As above, the atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form. In some embodiments, the statin dosing regimen is one appropriate to patients from, for example, Japan: Dosing regimen Atorvastatin 10 to 40 mg once daily Fluvastatin 60 mg once daily Pitavastatin 1 to 4 mg once daily Rosuvastatin 2.5 to 20 mg once daily Simvastatin 10 to 20 mg once daily As above, the rosuvastatin may be dosed as rosuvastatin calcium, where the dose given is calculated as rosuvastatin in its free form. As above, the atorvastatin may be dosed as atorvastatin calcium or atorvastatin calcium trihydrate, where the dose given is calculated as atorvastatin in its free form. As above, the pitavastatin may be dosed as pitavastatin calcium, where the dose given is calculated as pitavastatin in its free form. Ezetimibe Ezetimibe refers to a compound with the chemical name (3R,4S)-1-(4-fluorophenyl)-3-[(3S)-3- (4-fluorophenyl)-3-hydroxypropyl]-4-(4-hydroxyphenyl)azetidin-2-one and the structure shown below:
Ezetimibe inhibits the absorption of cholesterol from the small intestine and decreases the amount of cholesterol normally available to liver cells. The lower levels of cholesterol in the liver cells leads them to absorb more cholesterol from circulation and thus lowering the levels of circulating cholesterol. It blocks the critical mediator of cholesterol absorption, the Niemann-Pick C1-like 1 (NPC1L1) protein on the gastrointestinal tract epithelial cells, as well as in hepatocytes; it blocks aminopeptidase N and interrupts a caveolin 1-annexin A2 complex involved in trafficking cholesterol (Phan 2012). Awad 2018 reported that ezetimibe reduces plasma LDL-C levels by up to 20% when used alone, and that it lowered plasma levels of lipoprotein(a) by about 7%. In some embodiments, ezetimibe is administered in a dose of 5 to 15 mg per day. The daily dose may be up to 10 mg, 11 mg, 12 mg, 13 mg, 14 mg or 15 mg. The daily dose may be at least 5 mg, 6 mg, 7 mg, 8 mg, 9 mg, or 10 mg. In some embodiments, ezetimibe is administered in a dose of 10 mg per day. In some embodiments, ezetimibe is administered as a free base, i.e. not in salt form. In some embodiments, ezetimibe is administered as a pharmaceutically acceptable salt thereof, where the dosage is that of ezetimibe not in a salt form. Unless otherwise stated, any reference in this disclosure to an amount of ezetimibe, or pharmaceutically acceptable salt thereof, is based on the ezetimibe free base equivalent weight. For example, “wt%” refers to weight % based on ezetimibe free base equivalent weight. Bempedoic acid Bempedoic acid refers to a compound also known as 8-hydroxy-2,2,14,14- tetramethylpentadecanedioic acid and the structure shown below:
. Bempedoic acid targets the cholesterol biosynthesis pathway in the liver. Bempedoic acid inhibits ATP-citrate lyase (ACL), two steps upstream of HMG CoA reductase. Bempedoic acid is converted to active coenzyme A form by enzymes found only in the liver and not in muscles (Agarwala and Goldberg 2020)
Bempedoic acid has been approved for use in combination with a statin or statin with other lipid- lowering therapies in patients unable to reach LDL-C goals with the maximum tolerated dose of a statin or, alone or in combination with other lipid-lowering therapies in patients who are statin intolerant, or for whom a statin is contraindicated. In some embodiments, bempedoic acid is administered in a dose of 150 to 200 mg per day. The daily dose may be up to 180 mg, 185 mg, 190 mg, 195 mg, or 200 mg. The daily dose may be at least 150 mg, 155 mg, 160 mg, 165 mg, 170 mg, 175 mg or 180 mg. In some embodiments, bempedoic acid is administered in a dose of 180 mg per day. In some embodiments, bempedoic acid is administered as a free acid, i.e. not in salt form. In some embodiments, bempedoic acid is administered as a pharmaceutically acceptable salt thereof, where the dosage is that of bempedoic acid not in a salt form. Unless otherwise stated, any reference in this disclosure to an amount of bempedoic acid, or pharmaceutically acceptable salt thereof, is based on the bempedoic acid free acid equivalent weight. For example, “wt%” refers to weight % based on bempedoic acid free acid equivalent weight. Salts of bempedoic acid are described in WO 2020/257573. Further Embodiments The following embodiments may apply to all aspects as described above or may relate to a single aspect. The embodiments may be combined together in any combination. (A1a) In some embodiments, A is (A1a).
In some embodiments of formula A1a, X1 is N. In some embodiments of formula A1a, X1 is C-RA3. In some embodiments A is of formula (A1);
. RA1 In some embodiments RA1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH. In some embodiments RA1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; and (v) C1-6 alkoxy, optionally substituted by OH, halo or C1-6 alkyl amido. In some embodiments RA1 is selected from the group consisting of: (i) H (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups or C1-6 alkyl amido; and (vi) OH. When RA1 is an optionally substituted C1-6 hydrocarbon it is an optionally substituted C1-6 alkyl. In some embodiments it is optionally substituted methyl or optionally substituted ethyl. In further embodiments, it is optionally substituted methyl. In further embodiments, it is unsubstituted methyl.
When RA1 is optionally substituted C1-6 alkyl, in some embodiments the optional substituents are selected from OH, CN, and one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br. When RA1 is optionally substituted C1-6 alkoxy, in some embodiments it is optionally substituted OMe or ethoxy. In some embodiments RA1 is unsubstituted OMe. When RA1 is optionally substituted C1-6 alkoxy, in some embodiments the optional substituents are selected from C1-6 alkyl amido and one or more halo groups. In another embodiment the optional substituents are selected from one, two or three F atoms. When RA1 is halo, in some embodiments it is F, Br or Cl. In other embodiments it is Br or Cl. In some embodiments RA1 is H. In some embodiments RA1 is OH. In some embodiments RA1 is CN. In some embodiments RA1 is methyl. In some embodiments RA1 is -OCF2H. In some embodiments RA1 is selected from H, Br, Cl, CN, OMe, ethoxy, methyl and ethyl. In further embodiments RA1 is selected from H, -OCF2H, Br and Cl. In further embodiments RA1 is selected from H, Br and Cl. In other embodiments RA1 is H or -OCF2H. In some embodiments RA1 is selected from the group consisting of H, OH, Br, Cl, CN, -OCF2H, OMe, ethoxy, methyl and ethyl. In some embodiments RA1 is selected from the group consisting of H, Br, Cl, CN, -OCF2H, OMe, ethoxy, methyl and ethyl. In some embodiments RA1 is selected from the group consisting of H, OH, -OCF2H, Br and Cl. In some embodiments RA1 is selected from the group consisting of H, -OCF2H, Br and Cl. In some embodiments RA1 is H. In some embodiments RA1 is OH or H. RA2 In some embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN;
(iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (where acyl substituent is H or Me); (vii) C1-6 thioalkyl, (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl, (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino. In some embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (where acyl substituent is H or Me); (vii) C1-6 thioalkyl, (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl, (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; and (xiii) OH. In some embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 acyl, C1-6 alkoxy or one or more halo groups;
(v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vii) C1-6 alkyl ester; (viii) C1-6 alkyl acyl; (ix) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; and (x) C1-6 alkylamino In further embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 acyl, C1-6 alkoxy or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vii) C1-6 alkyl ester; (viii) C1-6 alkyl acyl; and (ix) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups. In further embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 thioalkyl; (viii) C1-6 alkyl ester; and (ix) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups. In further embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-6 alkyl ester; (iv) C1-6 hydrocarbon;
(v) C1-6 alkyl amido optionally substituted by C1-3 alkyl amido, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups; (vi) C1-6 thioalkyl; (vii)C1-6 alkyl acyl; (viii) C5 heteroaryl; and (ix) C1-6 alkylamino. In some embodiments RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-3 alkyl, optionally substituted by OH, or one or more halo groups; (v) C1-3 alkoxy, optionally substituted by OH, or one or more halo groups; and (vi) cyclopropyl. When RA2 is halo, in some embodiments it is Br or Cl. In further embodiments it is Cl. In some embodiments RA2 is selected from CF3, CN, Cl, OMe, methyl, cyclopropyl, -OCHF2, - OCF3 and optionally substituted C1-6 alkylamido. In some embodiments RA2 is selected from CN, Cl, OMe, methyl, cyclopropyl, -OCHF2, -OCF3 and optionally substituted C1-6 alkylamido. In some embodiments RA2 is selected from C1-6alkyl ester, In some embodiments RA2 is CN. In some embodiments RA2 is H. In some embodiments RA2 is OH. In some embodiments RA2 is -C(=O)CH3. In some embodiments RA2 is -OCHF2. In some embodiments RA2 is cyclopropyl. In some embodiments RA2 is Cl. In some embodiments RA2 is methyl. In some embodiments RA2 is S-ethyl. In some embodiments RA2 is a pyrazole. In some embodiments RA2 is N(CH3)2. In some embodiments RA2 is C(=O)NH(CH2C(=O)NH2, C(=O)NHCH2C≡CH, C(=O)NH(oxetane), C(=O)NH(CH2CHF2), C(=O)NH(CH2CH3), C(=O)NH2, C(=O)NH(CH2), C(=O)N(CH3)2, C(=O)N(CH3)(CH2CH2OH), C(=O)N(CH3)(CH2C≡CH or C(=O)NH(CH2CH2OH). In some embodiments RA2 is -S-CH3. In some embodiments RA2 is -S-CH2CH3.
In some embodiments RA2 is -S-CH2-C(=O)-O-CH3. In some embodiments RA2 is C(=O)NH(CH)3. In some embodiments, RA2 is CF3. When RA2 is an optionally substituted C1-6 hydrocarbon it is an optionally substituted C1-6 alkyl. In some embodiments it is optionally substituted methyl, optionally substituted ethyl or optionally substituted cyclopropyl. In further embodiments, it is optionally substituted methyl. In further embodiments, it is unsubstituted methyl. In other embodiments it is unsubstituted cyclopropyl. When RA2 is optionally substituted C1-6 alkyl, in some embodiments the optional substituents are selected from OH, CN, or one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br. When RA2 is optionally substituted C1-6alkoxy, in some embodiments it is optionally substituted OMe or ethoxy. When RA2 is optionally substituted C1-6 alkoxy, in some embodiments the optional substituents are selected from alkyl amido and one or more halo groups. In another embodiment the optional substituents are selected from one or more F. In another embodiment where RA2 is optionally substituted C1-6 alkoxy it is difluoromethoxy (-OCHF2). When RA2 is C1-6 alkyl ester, in some embodiments it is -C(=O)OCH2CH3. When RA2 is C1-6 alkyl amido, in some embodiments the optional substituents are selected from one or more methyl groups, an oxetane ring, a C2 alkylamido and ethyl which ethyl is optionally substituted by OH or one or more halo groups. In other embodiments when RA2 is C1-6 alkyl amido it is C(=O)NHCH2C(=O)NH2, C(=O)NHCH2CHCH, -C(=O)NH-oxetane, C(=O)NHCH2CHF2, C(=O)NHCH2CH2OH, C(=O)NHCH2CH3, C(=O)NH2, C(=O)NHCH3 and C(=O)N(CH3)2. When RA2 is C1-6 alkyl amido, in some embodiments the optional substituent is OH. When RA2 is C1-6 alkylamino in some embodiments it is NHCH3, NHCH(CH3)2, N(CH2CH3)2, or N(CH3)2. In some embodiments when RA2 is C1-6 alkylamino it is N(CH3)2. In other embodiments RA2 is selected from -OCHF2, Cl, -OMe, methyl, C(=O)CH3, CN, -CH2OH, H and cyclopropyl. In further embodiments RA2 is selected from methyl, -OCHF2, Cl, -CH2OH, H, CN, -C(=O)CH3 and -OMe.
In further embodiments RA2 is selected from methyl, -OCHF2, Cl and cyclopropyl. In further embodiments RA2 is selected from H, -COOH, -CH2OH, methyl, CN, cyclopropyl, -C(=O)CH3, -OCHF2, Cl, -C(=O)OCH2CH3, -C(=O)NH2, -C(=O)NHCH3, - C(=O)N(CH3)2, -C(=O)NHCH2C(=O)NH2, -C(=O)NHCH2CHCH, -C(=O)NH-oxetane, - C(=O)NHCH2CHF2, -C(=O)NHCH2CH2OH and -C(=O)NHCH2CH3. In some embodiments RA2 is selected from the group consisting of -CN, methyl, Cl, -C(=O)CH3, -C(=O)OCH2CH3, cyclopropyl, -C(=O)NHCH2C(=O)NH2, -C(=O)NHCH2CHCH, -C(=O)NH-oxetane, -C(=O)NHCH2CHF2, -C(=O)NHCH2CH2OH, -C(=O)NHCH2CH3, -C(=O)NH2, -C(=O)NHCH3, -C(=O)N(CH3)2, -OCHF2, H, -OMe, and -OCF3. In some embodiments RA2 is selected from C(=O)OCH2CH3, cyclopropyl, methyl, C(=O)NH(CH2C(=O)NH2, C(=O)NHCH2C≡CH, C(=O)NH(oxetane), C(=O)NH(CH2CHF2), C(=O)NH(CH2CH3), C(=O)NH2, C(=O)NH(CH3), C(=O)N(CH3)2, H, C(=O)N(CH3)(CH2CH2OH), C(=O)N(CH3)(CH2C≡CH, Cl, N(CH3)2, pyrazole, S-ethyl, C(=O)CH3, and C(=O)NH(CH2CH2OH). In some embodiments RA2 is selected from CN, methyl, Cl, -C(=O)CH3, -C(C=O)OCH2CH3, cyclopropyl, -C(=O)NHCH2C(=O)NH2, -C(=O)NHCH2CHCH, -C(=O)NH-oxetane, - C(=O)NHCH2CHF2, -C(=O)NHCH2CH2OH, -C(=O)NHCH2CH3, -C(=O)NH2, -C(=O)NHCH3, - C(=O)N(CH3)2, -OCHF2, H, -OMe and -OCF3. These groups are as shown in the table below:
In some embodiments RA2 is selected from the following groups: In some embodiments RA2 is selected from the following groups: In some embodiments RA2 is selected from the following groups:
In some embodiments RA2 is selected from the following groups: In some embodiments RA2 is selected from halo, C1-6 hydrocarbon and C1-6 alkoxy optionally substituted by one or more halo. In some embodiments RA2 is selected from chloro, bromo, C1-6alkyl and C1-6 alkoxy optionally substituted by one, two or three halo. In some embodiments RA2 is selected from H, chloro, methyl, OCF2H, CF3 and cyclopropyl. In some embodiments RA2 is selected from chloro, methyl, OCF2H, and CF3. In some embodiments, RA2 is selected from methyl, CF3 and OCF2H. In some embodiments, RA2 is selected from OCF2H and methyl. In some embodiments RA2 is selected from chloro, methyl and OCF2H. In some embodiments RA2 is selected from chloro and OCF2H. RA3 In some embodiments RA3 is selected from the group consisting of: (i) H; (ii) halo;
(iii) CN; (iv) C1-6 hydrocarbon optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) -NH2; (x) C1-6 alkylamino, optionally substituted by CN, OH or C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvi) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xvii) C1-6 sulfonimodyl; (xviii) C1-6 alkyl phosphinyl; (xix) carboxy; (xx) C(=O)NH2 (xxi) C1-6 alkyl ester; (xxii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiii) C1-6 alkyl amido. In some embodiments RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 alkylacylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; and (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups. In some embodiments RA3 is selected from the group consisting of: (i) H; (ii) halo;
(iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkylacyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 alkylacylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups. Where RA3 is halo, in some embodiments it is Br or Cl. In some embodiments it is Cl. In further embodiments RA3 is Br. Where RA3 is an optionally substituted C1-6 hydrocarbon it is an optionally substituted C1-6 alkyl. In some embodiments it is optionally substituted methyl or optionally substituted ethyl. In further embodiments, it is optionally substituted methyl. In further embodiments, it is unsubstituted methyl. When RA3 is optionally substituted C1-6 alkyl, in some embodiments the optionally substituents are selected from OH, CN, and one or more halo groups. In further embodiments the optional substituents are selected from OH, F and Br. In some embodiments RA3 is OH. When RA3 is optionally substituted C1-6 alkoxy, in some embodiments it is optionally substituted OMe or ethoxy. In further embodiments it is OMe. When RA3 is optionally substituted C1-6 alkoxy, in some embodiments the optional substituents are selected from alkyl amido or one or more halo groups. In another embodiment the optional substituents are selected from one or more F. In some embodiments RA3 is selected from H, CF3, CN, C1-2 alkyl, NH2 and halo. In other embodiments RA3 is selected from H, methyl, CN and Cl. In some embodiments RA3 is selected from H, OMe, CF3, CN, C1-2 alkyl, NH2 and halo. In some embodiments, RA3 is selected from the group consisting of H, methyl and OH. In some embodiments RA3 is CN. In some embodiments RA3 is H. In some embodiments RA3 is methyl.
In some embodiments RA3 is OMe. In some embodiments RA3 is selected from methyl, H and CN. In some embodiments RA3 is selected from H, methyl and OH. RA2 and RA3 When RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C6 carboaromatic ring or C5-7 heteroaromatic ring they form an optionally substituted benzene ring or an optionally substituted pyridine ring. When RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C6 carboaromatic ring or C5-7 heteroaromatic ring the optional substituents are selected from NH2, C1-6 alkyl, C1-6 alkoxy and halo. In other embodiments the optional substituents are selected from methyl, ethyl, OMe, NH2, F, Cl and Br. In other embodiments the optional substituents are selected from methyl, NH2, Cl, F and OMe. In other embodiments the optional substituent is methyl. In one embodiment when RA2 and RA3 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heteroaromatic ring, they form an optionally substituted pyridine. In some embodiments the optional substituent is NH2. In another embodiment RA2 and RA3 together with the carbon atoms to which they are bound form an unsubstituted pyridine. In another embodiment RA2 and RA3 together form an optionally substituted pyrazole, an optionally substituted pyrrole or an optionally substituted thiazole. In some embodiments the optional substituent is methyl. When RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heteroaromatic ring, the optional substituents are selected from C1-6 alkyl, C1-6 alkoxy, NH2 and halo. In other embodiments the optional substituents are selected from methyl, ethyl, OMe, ethoxy, NH2 and halo. In other embodiments the optional substituents are selected from NH2 and methyl. When RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heterocycle ring, they form a 5 membered ring which comprises one or two atoms selected from N, O and S. In some embodiments the 5 membered ring contains one N and one S. In other embodiments the 5 membered ring contains one N. In other embodiments the 5 membered ring contains one N and one O. In other embodiments the 5 membered ring contains two Ns. In some embodiments RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted pyrrole or pyrazole.
When RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C5-7 heterocycle ring, the optional substituents are selected from NH2, C1-6alkyl, C1-6 alkoxy and halo. In other embodiments the optional substituents are selected from methyl, ethyl, OMe, ethoxy, NH2, F, Cl and Br. In other embodiments the optional substituent is methyl. In other embodiments RA2 and RA3 together with the carbon atoms to which they are bound form: (i) optionally substituted C6 heteroaromatic ring; wherein the optional substituent is NH2; (ii) optionally substituted C6 carboaromatic ring; wherein the optional substituent is F, OMe, Cl; (iii) optionally substituted C5 heteroaromatic or C5 heterocycle ring wherein the optional substituent is methyl. In some embodiments RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C6 carboaromatic ring or C5-7 heteroaromatic ring wherein the optional substituents are selected from C1-6 alkyl, and halo. In some embodiments RA2 and RA3 together form an unsubstituted 2-pyrazole, a 2-pyrrole substituted by methyl, pyridine optionally substituted by NH2, or a phenyl optionally substituted by Cl, F or OMe. In some embodiments RA2 and RA3 together form a ring selected from: ,
In some embodiments, A is selected from one of the following formulae:
In some embodiments, A is selected from one of the following formulae:
, . In some embodiments, A1a is selected from one of the following formulae:
In some embodiments A is selected from one of the following formulae:
In some embodiments A is selected from one of the following formulae:
In some embodiments A is selected from one of the following formulae:
. In some embodiments A is selected from one of the following formulae:
. In some embodiments A is selected from one of the following formulae:
. (A2a) In some embodiments, A is (A2a).
wherein the wavy line indicates the point of attachment to B. Z1 is selected from O or S. In some embodiments, Z1 is O. In some embodiments, Z1 is S. RA5 RA5 is selected from the group consisting of:
(i) H; (ii) halo; (iii) CN; (iv) C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups; and (v) C1 alkoxy, optionally substituted by one or more halo groups; In some embodiments, RA5 is selected from H, halo, CN, or methyl optionally substituted by one or more OH groups or one or more halo groups. In some embodiments, RA5 is H. RA6 RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl; (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; In some embodiments RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-6 alkyl, optionally substituted by one or more OH or one or more halo groups; (iv) C1-6 alkoxy, optionally substituted by one or more halo groups; (v) C3-5 cycloalkyl; (vi) C1-6 thioalkyl; and (vii) C1-6 alkyl phosphinyl. In some embodiments RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-3 alkyl, optionally substituted by one or more OH or one or more halo groups; and
(iv) C1-3 alkoxy, optionally substituted by one or more halo groups. In some embodiments, RA6 is H. RA7 RA7 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocyclyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2; In some embodiments RA7 is H. In some embodiments RA7 is CN. In some embodiments when RA7 is halo it is selected from Cl, Br and F. In some embodiments when RA7 is optionally substituted C1-6 alkoxy it is OCF3, OCF2H or OMe. In some embodiments RA7 is selected from H, Cl, Br, OMe, CH=CH2, OCF3, OCF2H, F, CH2- CF2H, CF3, CF2H, CN, propargyl and CH2-cyclopropyl. In further embodiments RA3 is selected from H, Cl, Br and OMe. In some embodiments, A is selected from one of the following formulae:
,
, wherein the wavy line indicates the point of attachment to B and wherein RA5, RA6 and RA7 are as defined in any other embodiment herein. In some embodiments, A is selected from one of the following formulae:
, wherein the wavy line indicates the point of attachment to B. In some embodiments, A is of the formula A2a7:
In some embodiments, A is selected from one of formula A2a1, A2a3, and A2a5. In some embodiments, A2a is formula A2a5. (A2b) In some embodiments, A is A2b:
Z6 In some embodiments Z6 is N. In some embodiments Z6 is CH. Z7 In some embodiments Z7 is N. In some embodiments Z7 is C-RA8. Z6 and Z7 In some embodiments, Z6 is C-H, and Z7 is C-RA8. In some of these embodiments, RA8 is H. In some embodiments, Z6 is N and Z7 is C-H. Z8 and Z9 In some embodiments Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl. In some embodiments Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl, and (viii) C1-6 alkyl phosphinyl.
In some embodiments Z8 and Z9 are independently selected from: (i) H; (ii) halo; (iii) C1-6 alkyl, optionally substituted by one or more OH or one or more halo groups; (iv) C1-6 alkoxy, optionally substituted by one or more halo groups; (v) C3-5 cycloalkyl; (vi) C1-6 thioalkyl; and (vii) C1-6 alkyl phosphinyl. In some embodiments Z8 and Z9 are H. In some embodiments, Z6 and Z7 are C-H, and Z8 and Z9 are H. In some embodiments when one or both of Z8 and Z9 are halo it is F, Cl or Br. In some embodiments when one or both of Z8 and Z9 are optionally substituted C1-6 alkyl it is a methyl, ethyl, propyl, CH2OH, CH2F, CHF2, CF3. In further embodiments it is methyl, ethyl, CH2OH or CF3. In some embodiments when one or both of Z8 and Z9 are an optionally substituted C1-6 alkoxy it is OMe, O-ethyl, O-propyl, OCF2H, OCF3, OCFH2. In further embodiments it is OMe, OCF3, OCF2H. In some embodiments when one or both of Z8 and Z9 are a cycloalkyl it is cyclopropyl or cyclobutyl. In some embodiments it is cyclopropyl. In some embodiments when one or both of Z8 and Z9 are a C1-6 thioalkyl it is S-CH3, S-CH2CH3 or S-CH2CH2CH3. In some embodiments it is S-CH3. In some embodiments when one or both of Z8 and Z9 are a C1-6 alkyl phosphinyl it is P(=O)Me2, P(=O)(CH2CH3)2 or P(=O)(CH3)(CH2CH3). In some embodiments it is P(=O)Me2. In further embodiments one or both of Z8 and Z9 are selected from H, CH2OH, OCF2H, OCF3, CF3, F, Cl, Br, ethyl, cyclopropyl, methyl, P(=O)Me2, S-CH3 and OMe. RA8 In some embodiments RA8 is selected from: (i) H; (ii) halo (iii) CN;
(iv) C1-6 alkyl optionally substituted by OH, or one or more halo groups; (v) C2-6 alkenyl optionally substituted by OH, or one or more halo groups; (vi) C2-6 alkynyl optionally substituted by OH, or one or more halo groups; and (vii) C1-6 alkoxy, optionally substituted by one or more halo groups. In some embodiments RA8 is H. In some embodiments RA8 is CN. In some embodiments when RA8 is halo it is selected from Cl, Br and F. In some embodiments when RA8 is an optionally substituted C1-6 alkyl it is methyl, ethyl, propyl, CF3, CF2H, CH2-CF2H or CH2-cyclopropyl. In further embodiments it is CF3, CH2-CF2H, CF2H or CH2-cyclopropyl. In some embodiments when RA8 is C2-6 alkenyl it is CH=CH2, CH=CHCH3 or CH2CH=CH2. In some embodiments it is CH=CH2. In some embodiments when RA8 is C2-6 alkynyl it is propargyl, acetylene or 1-butyne. In some embodiments it is propargyl. In some embodiments when RA8 is optionally substituted C1-6 alkoxy it is OCF3, OCF2H or OMe. In some embodiments RA8 is selected from H, Cl, Br, OMe, CH=CH2, OCF3, OCF2H, F, CH2- CF2H, CF3, CF2H, CN, propargyl and CH2-cyclopropyl. In further embodiments RA8is selected from H, Cl, Br and OMe. In some embodiments, A is selected from one of the following formulae:
,
, wherein the wavy line indicates the point of attachment to B and wherein Z7, Z8, and Z9 are as defined in any other embodiment herein. In some embodiments, A is selected from one of the following formulae: ,
wherein the wavy line indicates the point of attachment to B, and Z6 is as defined in any other embodiment herein. In some embodiments, A is formula A2b7. In some embodiments A is selected from one of the following formulae:
(A3a) and (A3b) In some embodiments, A is (A3a) or (A3b):
In some embodiments, A is (A3a). In some embodiments, A is (A3b). RA9 In some embodiments, RA9 is selected from methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1- methylcyclopropyl and 2-methylcyclopropyl. In some embodiments, RA9 is selected from methyl, cyclopropyl, 1-methylcyclopropyl and 2- methylcyclopropyl. In some embodiments, RA9 is selected from methyl and 1-methylcyclopropyl. In some embodiments, RA9 is methyl. In some embodiments, A is:
RA4 RA4 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl;
(viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl; (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; In some embodiments RA4 is selected from the group consisting of: (i) H; (ii) halo; (iii) C1-3 alkyl, optionally substituted by OH, or one or more halo groups; (v) C1-3 alkoxy, optionally substituted by OH, or one or more halo groups; and (vi) cyclopropyl. In some embodiments RA4 is CN. In some embodiments RA4 is H. In some embodiments RA4 is -OCHF2. In some embodiments RA4 is cyclopropyl. In some embodiments RA4 is Cl. In some embodiments RA4 is methyl. In some embodiments, RA4 is selected from H, CN, -OCF2H, cyclopropyl, Cl, and methyl. In some embodiments, A is one of formulae (A1a), (A2b), (A3a), and (A3b). In some embodiments, A is of formulae (A1a) or (A2b). In some embodiments, A is selected from one of the following formulae:
. In some embodiments, A is selected from one of the following formulae:
In some embodiments, A is selected from one of the following formulae:
In some embodiments, A is selected from one of the following formulae:
In some embodiments, A is selected from one of the following formulae:
. (B-1) In some embodiments B is of formula (B-1):
wherein the wavy line indicates the point of attachment to A and C; wherein RB1 is -H, -OH, - OMe, -O-ethyl, -CH2OH, -CH2CH2OH or =CHCH2-OH. In other embodiments RB1 is H, -CH2OH, -CH2CH2OH or =CHCH2-OH. In other embodiments RB1 is -CH2OH, -CH2CH2OH or =CHCH2-OH. In other embodiments RB1 is H. In another embodiment B is of the formula (B-1a):
In further embodiments B is of the formula (B-1b):
Therefore, in some embodiments the compounds of Formula (I) is the S,S-enantiomer. Alternatively, it is disclosed that B may be of formula (B-2):
wherein the wavy lines indicate the point of attachment to A and C; RB2 is C1-2 alkyl-OH, CH2CONHMe or C1-3 alkyl, wherein when RA1 is H or halo, RB2 is C1-2 alkyl-OH or CH2C(=O)NHMe, In some of these alternatives, RB2 is C1-2 alkyl-OH, or C1-3 alkyl. In some of these alternatives RB2 is C1-2 alkyl-OH or CH2C(=O)NHMe. In some of these alternatives when X1 is O or S and RA1 is H or halo, RB2 is C1-2 alkyl-OH or CH2C(=O)NHMe. In some of these alternatives when B is of the formula (B-2) it is of the following formula (B-2a):
(B-2a) wherein the wavy lines indicate the point of attachment to A and C; and RB2 is C1-2alkyl-OH, CH2CONHMe or C1-2alkyl, wherein when RA1 is H or halo, RB2 is C1-2 alkyl-OH or CH2C(=O)NHMe. (C-1a) In some embodiments, C is (C-1a).
In some embodiments X is H. In some embodiments X is F. In some embodiments, C is (C-1):
In some embodiments, RN is H, methyl or benzyl optionally substituted with a C1-3 alkoxy group. In some embodiments RN is H, methyl or benzyl substituted with a C1-3 alkoxy group. In some embodiments RN is H, methyl or para-methoxybenzyl. In some embodiments RN is H or methyl. In some embodiments RN is H or benzyl optionally substituted with a C1-3 alkoxy group. In some embodiments, RN is benzyl optionally substituted with a C1-3 alkoxy group. In some embodiments, RN is benzyl substituted with a C1-3 alkoxy group. In some embodiments, RN is para-methoxybenzyl. In some embodiments, RN is H. In some embodiments, RN is methyl. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form a benzene ring or a pyridine ring, which rings are optionally substituted by one or more RC3 groups. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form a benzene ring which is optionally substituted by one or more RC3 groups. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form a pyridine ring which is optionally substituted by one or more RC3 groups. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form an unsubstituted benzene ring or an unsubstituted pyridine ring. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form an unsubstituted benzene ring. In some embodiments, RC1 and RC2 together with the carbon atoms to which they are bound form an unsubstituted pyridine ring.
In some embodiments RC3 is selected from CN and P(=O)Me2. In some embodiments RC3 is CN. In some embodiments RC3 is P(=O)Me2. In some embodiments, C is of the formula:
wherein X is hydrogen or fluorine, and wherein Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN, C-CONMe2, and CP(=O)Me2 and the remaining three are C-H; or one of Q1, Q2, Q3 and Q4 is N-Me and one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the remaining two are C-H. In some embodiments, Q1, Q2, Q3 and Q4 are all C-H; or one of Q1, Q2, Q3 and Q4 is N-Me, one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the other two are C-H. In some embodiments, Q1, Q2, Q3 and Q4 are all C-H; or one of Q1 and Q2 is N-Me and the other is C=O and Q3 and Q4 are C-H. In some embodiments, C is of the formula:
wherein Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C- CN and CP(=O)Me2 and the remaining three are C-H. In another embodiment, C is selected from one of the formulae listed in the following table:
wherein the wavy line indicates the point of attachment to B, and X is hydrogen or fluorine. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, C is selected from one of the following formulae:
. wherein the wavy line indicates the point of attachment to B, RN is as defined in any other embodiment herein, and X is hydrogen or fluorine. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, C is selected from one of the following formulae:
wherein X is hydrogen or fluorine. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, C is selected from one of the following formulae:
A and C In some embodiments A is:
In some embodiments, X is hydrogen. In some embodiments, A is selected from:
wherein the wavy line indicates the point of attachment to B, and wherein RA9, RA1, RA2, Z8, Z9, X and RN are as defined in any other embodiment herein. In some of these embodiments, X is H. In some of these embodiments, X is F. In some embodiments, A is selected from:
wherein the wavy line indicates the point of attachment to B. In some embodiments, A is selected from:
wherein the wavy line indicates the point of attachment to B. A-B-C (A1a) In other embodiments the compound of formula A-B-C is of the formula (I-Ax):
wherein RA1, RA2, X1, X, RC1, RC2 and RN are as defined in any other embodiment herein. In some embodiments RA1 is H, OH, CN, Br, Cl, optionally substituted -OMe, -O-ethyl, methyl or ethyl, where the optional substituents on the -OMe, O-ethyl, methyl or ethyl groups are selected from OH, CN, and one or more halo groups. In some embodiments RA1 is H, CN, OH, Br, Cl, optionally substituted -OMe, -O-ethyl, methyl or ethyl, where the optional substituents on the - OMe, O-ethyl, methyl or ethyl groups are selected from OH, CN, and one or more halo groups.
In further embodiments RA1 is optionally substituted O-methyl wherein the optional substituents are one or more F groups. In further embodiments RA1 is H. In further embodiments RA1 is OH. In some embodiments RA2 is selected from the group consisting of: Br, Cl, CN, H, -C(=O)CH3, C1-6 alkyl amido which alkyl amido is optionally substituted by C1-3 alkyl amido, a thioalkyl optionally substituted by C1-3 alkyl ester, CN, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups, optionally substituted methoxy, methyl, ethyl or cyclopropyl wherein the optional substituents are selected from OH, CN, and one or more halo groups, and an optionally substituted methoxy or ethoxy wherein the optional substituents are selected from alkyl amido and one or more halo groups. In some embodiments RA2 is selected from the group consisting of: Br, Cl, CN, H, -C(=O)CH3, C1-6 alkyl amido which alkyl amido is optionally substituted by C1-3 alkyl amido, CN, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl which alkyl is optionally substituted with one or more halo or OH groups, optionally substituted methoxy, methyl, ethyl or cyclopropyl wherein the optional substituents are selected from OH, CN, or one or more halo groups, and an optionally substituted methoxy or ethoxy wherein the optional substituents are selected from alkyl amido or one or more halo groups. In further embodiments RA2 is selected from CN, methyl, Cl, -C(=O)CH3, -C(=O)OCH2CH3, cyclopropyl, -C(=O)NHCH2C(=O)NH2, -C(=O)NHCH2CHCH, -C(=O)NH-oxetane, - C(=O)NHCH2CHF2, -C(=O)NHCH2CH2OH, -C(=O)NHCH2CH3, -C(=O)NH2, -C(=O)NHCH3, - C(=O)N(CH3)2, -OCF2H, H, -OMe and -OCF3. In some embodiments RA2 is selected from the group consisting of CN, methyl, Cl, -C(=O)CH3, OCHF2, cyclopropyl, OCF3, OCH3, H, -C(=O)NH(CH3), S-CH3, -S-CH2CH3 and -S-CH2-C(=O)-O-CH3. In some embodiments RA3 is selected from the group consisting of CN, Br, Cl, OH, H, CF3, C1-2 alkyl, C1-2 alkoxy and NH2. In further embodiments RA3 is selected from H, methyl and CN. In other embodiments RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted C6 carboaromatic ring or C5-7 heteroaromatic ring, the optional substituents are selected from NH2, C1-6 alkyl, C1-6 alkoxy and halo. In other embodiments the optional substituents are selected from NH2, methyl, ethyl, OMe, F, Cl and Br. In some embodiments RA3 and RA2 together with the carbon atoms to which they are bound form an optionally substituted pyridine, an optionally substituted benzene, a pyrrole or a pyrazole. In some embodiments RA2 and RA3 together form an unsubstituted 2-pyrazole, a 2- pyrrole substituted by methyl, pyridine optionally substituted by NH2 or benzene optionally substituted by Cl, F or OMe. In other embodiments the compound of formula A-B-C is of the formula (I-Bx) or (I-By):
wherein RA2, X, RC1, RC2 and RN are as defined in any other embodiment herein. In some embodiments formula (I-Bx) can be formulae (I-Bax), (I-Bbx), or (I-Bcx) as shown below:
wherein X, RC1, RC2 and RN are as defined in any other embodiment herein. In some embodiments formula (I-By) can be formula (I-Bay) as shown below:
wherein X, RC1, RC2 and RN are as defined in any other embodiment herein. In other embodiments the compound of formula A-B-C is of the formula (I-Cx):
wherein RA1, RA2, X1, X and RN are as defined in any other embodiment herein, and Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN, C-C(=O)NMe2, and CP(=O)Me2 and the remaining three are C-H; or one of Q1, Q2, Q3 and Q4 is N-Me and one of the adjacent Q1, Q2, Q3 or Q4 is C=O. In some embodiments, Q1, Q2, Q3 and Q4 are all C-H; or one of Q1, Q2, Q3 and Q4 is N-Me, one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the other two are C-H. In some embodiments, Q1, Q2, Q3 and Q4 are all C-H; or one of Q1 and Q2 is N-Me and the other is C=O and Q3 and Q4 are C-H. In some embodiments of formula (I-Cx), X is hydrogen and Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN and CP(=O)Me2 and the remaining three are C-H. In some embodiments, RA2 in formula (I-Cx) is selected from fluoro, chloro, bromo and iodo. In some embodiments formula (I-Cx) can be any one of formulae (I-Cax) to (I-Cgx) as shown below:
7
5
A-B-C (A2a) In other embodiments the compound of formula A-B-C is of the formula (IV-A):
wherein Z1, RA5, RA6, RA7, X, RC1, RC2, and RN are as defined in any other embodiment herein. In some embodiments, when A-B-C is of formula (IV-A), Z1 is S. In other embodiments, Z1 is O. In some embodiments, when A-B-C is of formula (IV-A), RA5 is selected from the group consisting of H, halo, CN, C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups, and C1 alkoxy, optionally substituted by one or more halo groups. In some embodiments, RA5 is selected from H, halo, CN, or methyl optionally substituted by one or more OH groups or one or more halo groups. In some embodiments, RA5 is H. In some embodiments, when A-B-C is of formula (IV-A), RA6 is selected from the group consisting of H, halo, CN, C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups, C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups, C1-6 alkylamino, C1-6 thioalkyl, C1-6 alkyl phosphinyl, and C1-6 alkyl phosphonyl. In some embodiments RA6 is selected from the group consisting of H, halo, C1-3 alkyl, optionally substituted by one or more OH or one or more halo groups, and C1-3 alkoxy, optionally substituted by one or more halo groups. In some embodiments, RA6 is H. In some embodiments, when A-B-C is of formula (IV-A), RA7 is selected from the group consisting of H, halo, CN, C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6
alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups, C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups, C4 heterocyclyl, C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl, C1-6 dialkylamino, optionally substituted by -NH2, and C1-6 thioalkyl, optionally substituted by OH or - NH2. In some embodiments RA7 is selected from H, Cl, Br, OMe, CH=CH2, OCF3, OCF2H, F, CH2-CF2H, CF3, CF2H, CN, propargyl and CH2-cyclopropyl. In further embodiments RA7is selected from H, Cl, Br and OMe. In some embodiments, RA7 is H. In some embodiments formula (IV-A) can be any one of formulae (IV-Aa), (IV-Ab), (IV-Ac), (IV- Ad), (IV-Ae), or (IV-Af) as shown below:
wherein RA5, RA6, RA7, X, RC1, RC2, and RN are as defined in any other embodiment herein. In other embodiments, the compound of formula A-B-C is of the formula (IV-B):
wherein Z1, RA5, RA6, X, Q1, Q2, Q3, Q4, and RN are as defined in any other embodiment herein. In some embodiments, formula (IV-B) can be any one of the formulae (IV-Ba), (IV-Bb), (IV-Bc), (IV-Bd), and (IV-Be) as shown below:
A-B-C (A2b) In other embodiments the compound of formula A-B-C is of the formula (II-Ax):
wherein Z6, Z7, Z8, Z9, X, RC1, RC2 and RN are as defined in any other embodiment herein.
In some embodiments when A-B-C is of formula (II-Ax), Z8 and Z9 are independently selected from the group consisting of H, one or more halo groups, CN, C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups, C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, or one or more halo groups, C1-6 alkylamino, C1-6 thioalkyl, and C1-6 alkyl phosphinyl. In further embodiments Z8 and Z9 are selected from H, CH2OH, OCF2H, OCF3, CF3, F, Cl, Br, ethyl, cyclopropyl, methyl, P(=O)Me2, S-CH3, CN, and OMe. In some embodiments when A-B-C is of formula (II-Ax), RA8 is selected from H, halo, CN, C1-6 alkyl optionally substituted by OH or one or more halo groups, C2-6 alkenyl optionally substituted by OH or one or more halo groups, C2-6 alkynyl optionally substituted by OH or one or more halo groups, and C1-6 alkoxy, optionally substituted by one or more halo groups. In further embodiments RA8 is selected from H, Cl, Br, OMe, CH=CH2, OCF3, OCF2H, F, CH2-CF2H, CF3, CF2H, CN, propargyl and CH2-cyclopropyl. In further embodiments RA8 is selected from H, Cl, Br and OMe. In some embodiments formula (II-Ax) can be any one of formulae (II-Aax), (II-Abx), (II-Acx) and (II-Adx) as shown below:
wherein Z7, Z8, Z9, X, RC1, RC2, and RN are as defined in any other embodiment herein. In other embodiments the compound of formula A-B-C is of the formula (II-Bx):
wherein Z6, X, RC1, RC2, and RN are as defined in any other embodiment herein. In some embodiments formula (II-Bx) can be any one of formulae (II-Bax) and (II-Bbx) shown below:
wherein X, RC1, RC2, and RN are as defined in any other embodiment herein.
In other embodiments the compound of formula A-B-C is of the formula (II-Cx):
wherein Z6, Z7, Z8, Z9, X and RN are as defined in any other embodiment herein, and Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN and C-PO(Me)2 and the remaining three are C-H. In some embodiments, Z8 and/or Z9 in formula (II-Cx) is selected from fluoro, chloro, bromo or iodo. In some embodiments formula (II-Cx) can be any one of formulae (II-Cax) to (II-Cgx) as shown below:
wherein Z6, Z7, Z8, Z9, X, and RN are as defined in any other embodiment herein. A-B-C (A3a) and (A3b) In other embodiments the compound of formula A-B-C is of the formula (III-Ax):
(III-Ax), wherein RA9, X, RC1, RC2 and RN are as defined in any other embodiment herein.
In other embodiments the compound of formula A-B-C is of the formula (III-Bx):
wherein X, RC1, RC2 and RN are as defined in any other embodiment herein. In other embodiments the compound of formula A-B-C is of the formula (III-Cx):
wherein RA9, X, and RN are as defined in any other embodiment herein, and Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C-CN and C-P(=O)Me2 and the remaining three are C-H. In some embodiments, RA9 in formula (III-Cx) is selected from fluoro, chloro, bromo and iodo. In some embodiments formula (III-Cx) can be any one of formulae (III-Cax) to (III-Cgx) as shown below:
wherein RA9, X, and RN are as defined in any other embodiment herein. In some embodiments, the stereochemistry of the B group in any of the above A-B-C formulae (I-Ax), (I-Bx), (I-By), (I-Bax), (I-Bbx), (I-Bcx), (I-Bay), (I-Cx), (I-Cax) (I-Cbx), (I-Ccx), (I-Cdx), (I- Cex), (I-Cfx), (I-Cgx), (IV-A), (IV-Aa), (IV-Ab), (IV-Ac), (IV-Ad), (IV-Ae), (IV-Af), (IV-B), (IV-Ba), (IV-Bb), (IV-Bc), (IV-Bd), (IV-Be), (II-Ax), (II-Aax), (II-Abx), (II-Acx), (II-Adx), (II-Bx), (II-Bax), (II-
Bbx), (II-Cx), (II-Cax), (II-Cbx), (II-Ccx), (II-Cdx), (II-Cex), (II-Cfx), (II-Cgx), (III-Ax), (III-Bx), (III- Cx), (III-Cax), (III-Cbx), (III-Ccx), (III-Cdx), (III-Cex), (III-Cfx), (III-Cgx) is as follows;
. In some embodiments the compound of formula (I) is selected from the following in Table 1. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from the following in Table 1. Table 1. Examples 1 to 19 Example No Structure Example Name 1-(6-(((1S,3S)-3-(Oxazolo[5,4-b]pyridin- 2-ylamino)cyclopentyl)amino)pyridin-3- 1 yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one 1-(6-(((1S,3S)-3-(Thiazolo[5,4-b]pyridin- 2-ylamino)cyclopentyl)amino)pyridin-3- 2 yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 3 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one H N N HN O N 1-(6-(((1S,3S)-3-((5-Chloropyrimidin-2- N 4 N NH yl)amino)cyclopentyl)amino)pyridin-3-yl)- Cl 1,3-dihydro-2H-benzo[d]imidazol-2-one
Example No Structure Example Name 1-(6-(((1S,3S)-3-((6-Methyl-1,2,4-triazin- 3-yl)amino)cyclopentyl)amino)pyridin-3- 5 yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one 3-(6-(((1S,3S)-3-((5-Chloropyrimidin-2- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 6 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 1-(6-(((1S,3S)-3-((5-Methyl-1,2,4- oxadiazol-3- 7 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2- 8 ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one 1-Methyl-3-(6-(((1S,3S)-3-((5- methylpyrazin-2- 9 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carbonitrile 3-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 10 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one
Example No Structure Example Name 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 11 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 6-(dimethylphosphoryl)-1,3-dihydro-2H- benzo[d]imidazol-2-one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 12 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 1-(6-(((1S,3S)-3-((5-Chloropyrimidin-2- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 13 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 1-Methyl-3-(6-(((1S,3S)-3-((5-methyl- 1,2,4-oxadiazol-3- 14 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carbonitrile 1-Methyl-3-(6-(((1S,3S)-3-((6-methyl- 1,2,4-triazin-3- 15 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carbonitrile 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2- 16 ylamino)cyclopentyl)amino)pyridin-3-yl)- 3-methyl-1,3-dihydro-2H-imidazo[4,5- b]pyridin-2-one
Example No Structure Example Name 3-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 17 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1-methyl-1,3-dihydro-2H-imidazo[4,5- b]pyridin-2-one 3-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2- 18 ylamino)cyclopentyl)amino)pyridin-3-yl)- 1-methyl-1,3-dihydro-2H-imidazo[4,5- b]pyridin-2-one 3-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyrimidin-2- 19 ylamino)cyclopentyl)amino)pyridin-3-yl)- 1-methyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carbonitrile In some embodiments the compound of formula (I) is selected from the following in Table 2. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from the following in Table 2. Table 2: Examples 20 to 32. Example No Structure Example Name 1-(6-(((1S,3S)-3-(Thiazolo[5,4-b]pyridin- 2-ylamino)cyclopentyl)amino)pyridin-3- 20 yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin- 2-one 1-(4-Methoxybenzyl)-3-(6-(((1S,3S)-3- ((6-methyl-1,2,4-triazin-3- 21 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one
3-Methyl-1-(6-(((1S,3S)-3-((6-methyl- 1,2,4-triazin-3- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 3-Methyl-1-(6-(((1S,3S)-3-((5-methyl- 1,2,4-oxadiazol-3- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 1-(6-(((1S,3S)-3-((5- (Trifluoromethyl)pyrimidin-2- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 3-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2- ylamino)cyclopentyl)amino)pyridin-3-yl)- 1-methyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carbonitrile 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2- ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- yl)amino)cyclopentyl)amino)pyridin-3-yl)- N,N-dimethyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazole-4-carboxamide 1-(5-Fluoro-6-(((1S,3S)-3-((6-methyl- 1,2,4-triazin-3- yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one
1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5- a]pyridin-2-ylamino)cyclopentyl)amino)- 29 5-fluoropyridin-3-yl)-1,3-dihydro-2H- benzo[d]imidazol-2-one 3-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 30 yl)amino)cyclopentyl)amino)-5- fluoropyridin-3-yl)-1,3-dihydro-2H- imidazo[4,5-b]pyridin-2-one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 31 yl)amino)cyclopentyl)amino)-5- fluoropyridin-3-yl)-1,3-dihydro-2H- imidazo[4,5-b]pyridin-2-one 1-(6-(((1S,3S)-3-((5- (Difluoromethoxy)pyrimidin-2- 32 yl)amino)cyclopentyl)amino)pyridin-3-yl)- 5-methyl-3,5-dihydro-1H-imidazo[4,5- c]pyridine-2,4-dione In some embodiments the compound is selected from Examples 1, 2, 3, 5, 8, 10 and 12. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 1, 2, 3, 5, 8, 10 and 12. In some embodiments the compound is selected from Examples 3, 8, 10 and 12. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3, 8, 10 and 12. In some embodiments the compound is selected from Examples 3, and 12. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3, and 12. In some embodiments the compound is selected from Examples 12, 16, 23, 28, 30, and 32. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12, 16, 23, 28, 30, and 32.
In some embodiments the compound is selected from Examples 12 and 16. In some embodiments the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12 and 16. In some embodiments, the compound is selected from Examples 16 and 23. In some embodiments the compound is a pharmaceutically acceptable salt of a compound selected from Examples 16 and 23. In some embodiments the compound is selected from Examples 12, 19, 23, 28, 30, and 32. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12, 19, 23, 28, 30, and 32. In some embodiments the compound is selected from Examples 12 and 19. In some embodiments the compound is a pharmaceutically acceptable salt of a compound selected from Examples 12 and 19. In some embodiments, the compound is selected from Examples 19 and 23. In some embodiments the compound is a pharmaceutically acceptable salt of a compound selected from Examples 19 and 23. In some embodiments the compound is selected from Examples 3 to 8, 10 to 19, and 23 to 27. In some embodiments, the compound is a pharmaceutically acceptable salt of a compound selected from Examples 3 to 8, 10 to 19, and 23 to 27. Any definitions herein relating to formula (A1a) and its substituents may be understood as being equally applicable to formula (A1), and vice versa. In some embodiments there is provided a compound of formula (I) A-B-C (I) or a pharmaceutically acceptable salt and tautomeric forms or stereoisomers thereof, wherein A is of one of the following formulae:
wherein the wavy line indicates the point of attachment to B; RA1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by one or more OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH; RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl; (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl; (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon which is optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy,
C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) NH2; (x) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvii) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xviii) C1-6 sulfonimodyl; (xix) C1-6 alkyl phosphinyl; (xx) carboxy; (xxi) C(=O)NH2; (xxii) C1-6 alkyl ester; (xxiii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiv) C1-6 alkyl amido; or wherein RA3 and RA2 together with the carbon atoms to which they are bound form: (i) an optionally substituted C5-7 heterocycle ring; (ii) an optionally substituted C5-7 heteroaromatic ring; (iii) an optionally substituted C6 carboaromatic ring; (iv) an optionally substituted C5-7 carbocyclic ring wherein, when present, the one, two three or four optional substituents are independently selected from C1-6alkyl, halo, C1-6 alkoxy, NH2, C1-6alkylamino, OH, and CN; (A2b)
wherein the wavy line indicates the point of attachment to B;
Z6 is either N or C-H Z7 is either N or C-RA8 Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA8 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocycyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2; (A3a)
(A3b)
where RA9 is selected from H; methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1-methylcyclopropyl and 2-methylcyclopropyl; wherein B is of formula
wherein the wavy line indicates the point of attachment to A and C; RB1 is -H, -OH, =CHCH2-OH, -C1-4 alkyl, or -C1-4 alkyl which -C1-4 alkyl is optionally substituted by OH or OMe; wherein C is of formula: (C-1)
where RN is H or methyl; RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups; where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy;
(vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; and (ix) C1-6 alkyl acyl. In some embodiments, the compound of formula (I) is not according to one or more of the specific compounds described in WO 2024078620 A1. In some embodiments, the compound of formula (I) is not according to one or more of the specific compounds described in WO 2025021188 A1. In some embodiments, the compound of formula (I) is not according to one or more of the specific compounds described in WO 2025007915 A1. General synthesis The compounds according to general formula (I-G), (G9) and (G17) can be prepared according to the following schemes 1, 2, 3, 4, 5 and 6. The schemes and procedures described below illustrate synthetic routes to the compounds of general formula (I-G), (G9) and (G17) and are not intended to be limiting. It is clear that the order of transformations as exemplified in schemes 1, 2, 3, 4, 5 and 6 can be modified in various ways. The order of transformations exemplified in these schemes is therefore not intended to be limiting. Routes for the preparation of compounds of general formula (I-G), (G9) and (G17) and corresponding intermediates are described in schemes 1, 2, 3, 4, 5 and 6. In each of schemes 1 to 6, D has the formula:
wherein RC1, RC2 and RN are as defined for (C-1).
Scheme 1
Scheme 1: Routes for the preparation of compounds of general formula (I-G) in which X is a leaving group, PG is a protective group and RA1, RA2 and RA3 have the meaning as given for formula (A1a), supra. D is defined above. Monoarylated diamines of general formula (G3) can be obtained via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G2a) with X being a leaving group like halogen or -S(O)Me as depicted in Scheme 1. For SNAr approaches with X being groups like for example fluorine or -S(O)Me, diamines (G1) may be reacted with (G2a) in the presence of inorganic bases like K2CO3 or Na2CO3 or in the presence of organic bases like triethylamine or DIPEA or without any additional base in polar solvents such as for example DMSO, NMP or nBuOH at temperatures between 100-130 °C. The reaction times may vary between 1 hour and 24 hours. In certain instances, it can be beneficial to apply microwave heating. For palladium catalyzed Buchwald-Hartwig aminations all methods that are known in the art may be applied. For example, diamines (G1) may be reacted with (G2a) in the presence of a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8], Pd2(dba)3 or tBuXPhos Pd G3 [1447963-75-8] and a base like Cs2CO3 or NaOtBu in aprotic solvents like 1,4-
dioxane, DMF, toluene or DMA at temperatures between room temperature and 130 °C, preferably at 65-100 °C, for 15-24 h. Diamines of general formula (G1) and heteroaryls of general formula (G2a) are either commercially available or can be prepared according to procedures available from the public domain. For the synthesis of diamines (G1) see for example WO2004004726 and references therein. Arylated diamines of general formula (G6) can be obtained from (G3) via copper catalyzed Ullmann couplings with heterocycles (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5). For Ullmann couplings all methods that are known in the art may be applied. For example, (G3) may be reacted with (G4) in the presence of a copper catalyst like Cu(I)I, Cu(Otf)2 or Cu(Oac)2 and a base like Cs2CO3 or K2CO3 in polar, aprotic solvents like 1,4-dioxane, DMF or pyridine at temperatures between room temperature and 120 °C, preferably at 100 °C for 15-20 h. In some instances a ligand like N1,N2-dimethylcyclohexane- 1,2-diamine, TMEDA, N1,N2-dimethylethane-1,2-diamine or N,N-dimethylglycine might be added to the reaction mixture. For Suzuki couplings towards (G6) all methods that are known in the art may be applied. For example, (G3) may be reacted with boronic acid derivatives (G5) in the presence of a palladium catalyst like 1,1'-bis(di-tert-butylphosphino)ferrocene palladium dichloride [CAS Reg. No.95408- 45-0] or 1,1′-bis(diphenylphosphino)ferrocene palladium dichloride [CAS Reg. No.72287-26-4] and a base like Cs2CO3, K2CO3 or K3PO4 in polar solvents such as 1,4-dioxane, THF and water or mixtures thereof at temperatures between room temperature and 120 °C for 2-15 hours. Heterocycles of general formula (G4) and boronic acid derivatives of general formula (G5) are either commercially available or can be prepared according to procedures available from the public domain. Primary amines of general formula (G7) can be obtained from monoprotected diamines of general formula (G6) via deprotection methods. Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods. Appropriate protective moieties for amino groups and their introduction and cleavage are well-known in the art. For an overview of protective group chemistry see for example Wuts 2014. Final compounds of general formula (I-G) can be synthesized from primary amines of general formula (G7) via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald- Hartwig amination. Primary amines of general formula (G7) can be reacted with heteroaryls of general formula (G8) with X being a leaving group like halogen such as chlorine or -S(O)Me
applying procedures in analogy to those described for the synthesis of (G3) from (G1) and (G2a) in Scheme 1. Heteroaryls of general formula (G8) are either commercially available or can be prepared according to procedures available from the public domain. An analogous general scheme involves oxadiazoles of general formula (G8a) and its isomers. An alternative route to compounds of general formula (I-G) starts with deprotection of diamines of general formula (G3) to give primary amines of general formula (G9) as depicted in Scheme 1. For deprotection the same procedures apply as described for the synthesis of (G7) from (G6). Primary amines of general formula (G9) in turn can be reacted with heteroaryls of general formula (G8) via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald- Hartwig amination to give aryl iodides of general formula (G10) applying procedures in analogy to those described for the synthesis of (G3) from (G1) and (G2a) in Scheme 1. Final compounds of general formula (I-G) can be synthesized from aryl iodides of general formula (G10) via copper catalyzed Ullmann couplings with heterocycles H-D (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5) applying procedures in analogy to those described for the synthesis of compounds (G6) from (G3) in Scheme 1. Yet another approach to compounds of general formula (I-G) starts from monoprotected diamines (G1) or their corresponding salts and preassembled heteroaryls (G11a) with X being a leaving group like halogen or -S(O)Me via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination to give arylated diamines of general formula (G6). The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2a) in Scheme 1. Heteroaryls of general formula (G11a) are either commercially available or can be prepared according to procedures available from the public domain (for example via Chan-Lam coupling). Specific examples of (G11a) are described in the subsequent paragraphs. An alternative route for the preparation of compounds of general formula (I-G) and intermediates of general formula (G10) is depicted in Scheme 2.
Scheme 2
Scheme 2: Routes for the preparation of compounds of general formula (I-G) and intermediates (G10) in which X is a leaving group, PG is a protective group and RA1, RA2 and RA3 have the meaning as given for general formula (A1a), supra. D is defined above. Monoarylated diamines of general formula (G12) can be obtained via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G8) with X being a leaving group such as halogen or -S(O)Me. The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2a) in Scheme 1. An analogous general scheme involves oxadiazoles of general formula (G8a) and its isomers. Deprotection of diamines of general formula (G12) can give primary amines of general formula (G13). For deprotection the same procedures apply as described for the synthesis of (G7) from (G6) in Scheme 1. Final compounds of general formula (I-G) in turn can be synthesized from primary amines (G13) or their corresponding salts and preassembled heteroaryls (G11a) with X being a leaving group
like halogen or -S(O)Me via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination. The procedures that can be applied are in analogy to those described for the synthesis of (G6) from (G1) and (G11a) in Scheme 1. For the synthesis of intermediates of general formula (G10) primary amines (G13) or their corresponding salts may be reacted with heteroaryls (G2a) with X being a leaving group like halogen or -S(O)Me in a nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination. The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2a) in Scheme 1. Scheme 3
Scheme 3: Routes for the preparation of compounds of general formula (G9) are described in the scheme in which LG is a leaving group, PG is a protective group, Z6, Z7, Z8 and Z9 have the meaning as given for general formula (A2b), supra. D is defined above. Monoarylated diamines of general formula (G3) can be obtained via nucleophilic aromatic substitution (SNAr) or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1), or their corresponding salts, and heteroaryls (G2) with LG being a leaving group like halogen, e.g. fluorine, chlorine or bromine, or -S(O)1-2Me as depicted in Scheme 3. For SNAr
approaches with LG being groups like for example fluorine, chlorine or -S(O)Me, diamines (G1) may be reacted with (G2) in the presence of inorganic bases like K2CO3, Na2CO3 or Cs2CO3 or in the presence of organic bases like TEA or DIPEA, or without any additional base in polar solvents such as for example DMSO, NMP, nBuOH or 1,4-dioxane at temperatures between 100-130 °C. The reaction times may vary between 1 h and 24 h. In certain instances, it can be beneficial to apply microwave heating. For palladium catalyzed Buchwald-Hartwig aminations all methods that are known in the art may be applied. For example, diamines (G1) may be reacted with (G2) in the presence of a palladium catalyst like Pd PEPPSI-IpentCl [CAS Reg. No.1612891-29-8], Pd2(dba)3, tBuXPhos Pd G3 [1447963-75-8] or tBuBrettPhos G3 and a base like Cs2CO3, NaOtBu or MTBD in aprotic solvents like 1,4-dioxane, DMF, toluene, NMP or DMA at temperatures between room temperature and 130 °C, preferably at 65-100 °C, for 15-24 h. Diamines of general formula (G1) and heteroaryls of general formula (G2) are either commercially available or can be prepared according to procedures available from the public domain. For the synthesis of diamines (G1) see for example WO2004004726 and references therein. Arylated diamines of general formula (G6) can be obtained from (G3) via copper catalyzed Ullmann couplings with heterocycles (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5). For Ullmann couplings all methods that are known in the art may be applied. For example, (G3) may be reacted with (G4) in the presence of a copper catalyst like Cu(I)I, Cu(OTf)2 or Cu(Oac)2 and a base like Cs2CO3 or K2CO3 in polar, aprotic solvents like 1,4-dioxane, DMF or pyridine at temperatures between room temperature and 120 °C, preferably at 100 °C for 15-20 h. In some instances a ligand like DMCDA, TMEDA, N1,N2- dimethylethane-1,2-diamine or N,N-dimethylglycine might be added to the reaction mixture. For Suzuki couplings towards (G6) all methods that are known in the art may be applied. For example, (G3) may be reacted with boronic acid derivatives (G5) in the presence of a palladium catalyst like Pd(dtbpf)Cl2 [CAS Reg. No.95408-45-0] or Pd(dppf)Cl2 [CAS Reg. No.72287-26-4] and a base like Cs2CO3, K2CO3 or K3PO4 in polar solvents such as 1,4-dioxane, THF and water or mixtures thereof at temperatures between room temperature and 120 °C for 2-15 h. Heterocycles of general formula (G4) and boronic acid derivatives of general formula (G5) are either commercially available or can be prepared according to procedures available from the public domain.
Primary amines of general formula (G7) can be obtained from monoprotected diamines of general formula (G6) via deprotection methods. Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods. Appropriate protective moieties for amino groups and their introduction and cleavage are well-known in the art. For an overview of protective group chemistry see for example P.G.M. Wuts, T.W. Greene, Greene’s Protective Groups in Organic Synthesis 4th ed., J. Wiley & Sons, 2006. Final compounds of general formula (G9) can be synthesized from primary amines of general formula (G7) via SNAr or palladium catalyzed Buchwald-Hartwig amination. Primary amines of general formula (G7) can be reacted with heteroaryls of general formula (G8) with LG being a leaving group like halogen, such as chlorine or bromine, or -S(O)2Me applying procedures in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3. Heteroaryls of general formula (G8) are either commercially available or can be prepared according to procedures available from the public domain. An alternative route to compounds of general formula (G9) starts with deprotection of diamines of general formula (G3) to give primary amines of general formula (G10) as depicted in Scheme 3. For deprotection the same procedures apply as described for the synthesis of (G7) from (G6). Primary amines of general formula (G10) in turn can be reacted with heteroaryls of general formula (G8) via SNAr or palladium catalyzed Buchwald-Hartwig amination to give aryl iodides of general formula (G11) applying procedures in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3. Final compounds of general formula (G9) can be synthesized from aryl iodides of general formula (G11) via copper catalyzed Ullmann couplings with heterocycles H-D (G4) or via palladium catalyzed Suzuki couplings with boronic acid derivatives (G5) applying procedures in analogy to those described for the synthesis of compounds (G6) from (G3) in Scheme 3. Yet another approach to compounds of general formula (G9) starts from monoprotected diamines (G1) or their corresponding salts and preassembled heteroaryls (G12) with LG being a leaving group like halogen, e.g. fluorine, chlorine or bromine, or -S(O)1-2Me via SNAr or palladium catalyzed Buchwald-Hartwig amination to give arylated diamines of general formula (G6). The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3. Heteroaryls of general formula (G12) are either commercially available or can be prepared according to procedures available from the public domain (for example via Chan-Lam coupling, see for exampleChen 2020).
An alternative route for the preparation of compounds of general formula (G9) and intermediates of general formula (G11) is depicted in Scheme 4. Scheme 4
Scheme 4: Routes for the preparation of compounds of general formula (G9) and intermediates (G11) are described in the scheme in which LG is a leaving group, PG is a protective group, and Z6, Z7, Z8 and Z9 have the meaning as given for general formula (A2b), supra. D is defined above. Monoarylated diamines of general formula (G13) can be obtained via SNAr or palladium catalyzed Buchwald-Hartwig amination between monoprotected diamines (G1) or their corresponding salts and heteroaryls (G8) with LG being a leaving group like halogen, such as chlorine or bromine, or -S(O)2Me. The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3. Deprotection of diamines of general formula (G13) can give primary amines of general formula (G14). For deprotection the same procedures apply as described for the synthesis of (G7) from (G6) in Scheme 3.
Final compounds of general formula (G9) in turn can be synthesized from primary amines (G14) or their corresponding salts and preassembled heteroaryls (G12) with LG being a leaving group like halogen, e.g. fluorine, chlorine or bromine, or -S(O)1-2Me via SNAr or palladium catalyzed Buchwald-Hartwig amination. The procedures that can be applied are in analogy to those described for the synthesis of (G6) from (G1) and (G12) in Scheme 3. For the synthesis of intermediates of general formula (G11) primary amines (G14) or their corresponding salts may be reacted with heteroaryls (G2) with LG being a leaving group like halogen, e.g. fluorine, chlorine or bromine, or -S(O)1-2Me in an SNAr or palladium catalyzed Buchwald-Hartwig amination. The procedures that can be applied are in analogy to those described for the synthesis of (G3) from (G1) and (G2) in Scheme 3. Final compounds of general formula (G17) may be synthesized according to the routes depicted in Scheme 5. Primary amines of general formula (G7) or their corresponding salts (prepared according to Scheme 3) can be reacted with one carbon equivalents like CDI or TCDI in the presence of inorganic bases like sodium hydroxide or in the presence of organic bases like TEA or DIPEA, or without any additional base in polar, aprotic solvents like DMF at temperatures between rt and the boiling point of the solvent, preferably at 100 °C for 1-2 h to give an acylimidazole intermediate. This intermediate may be reacted in situ with 1,2-dianilines (G15) in the presence of a carbodiimide reagent like EDC at temperatures between rt and the boiling point of the solvent, preferably at 100 °C for 15-24 h to give (G17). Scheme 5
Scheme 5: Routes for the preparation of compounds of general formula (G17) in which Z6, Z7, Z8 and Z9 have the meaning as given for general formula (A2b), supra. D is defined above.
Alternatively, protected intermediates of general formula (G16), prepared according to the routes depicted in Schemes 3 or 4, may be deprotected to give compounds of general formula (G17). Depending on the protective group applied these can be for example acidic, basic, oxidative or hydrogenation methods. Suitable protective groups may be groups such as para- methoxybenzyl (PMB), 4-methylbenzenesulfonyl (Ts) or benzyl (Bn). Deprotection of a PMB group for example could be achieved by reaction with acids such as TFA in solvents like DCM, or without any additional solvent, at temperatures between rt and the boiling point of the solvent, preferably at 60-100 °C for 15 min to 18 h. Deprotection of a Ts group may be performed by reaction with a base such as K2CO3 or Na2CO3 in polar, protic solvent such as MeOH or EtOH at temperatures between rt and the boiling point of the solvent, preferably at 60 °C for 1-4 h. Yet another approach to compounds of general formula (G9) is depicted in Scheme 6. Aryl bromides of general formula (G18), prepared according to the procedures depicted in Schemes 3-5, can be functionalized under metal or metallaphotoredox catalysis (see for exampleChan 2022), e.g. via late-stage functionalisation, with nucleophiles of general formula (G19) (see for example Ley and Thomas 2003) or boronic acid derivatives (G20) (see for example Miyaura and Suzuki 1995) or stannanes (G21) (see for exampleCordovilla 2015) to give final compounds of general formula (G9). For metal or metallaphotoredox catalysis all methods that are known in the art may be applied. Nucleophiles of general formula (G19) and boronic acid derivatives of general formula (G20) and stannanes (G21) are either commercially available or can be prepared according to procedures available from the public domain. Scheme 6
Scheme 6: Route for the preparation of compounds of general formula (G9) in which Z6, Z7, Z8 and Z9 have the meaning as given for general formula (A2b), supra (provided that RA6 is not halogen). D is defined above. Further compounds with different formulae as described above can be prepared by similar methods.
Persons skilled in the art will appreciate that in order to obtain compounds of the disclosure in an alternative, and on some occasions, more convenient, manner, the individual process steps mentioned hereinbefore may be performed in different order, and/or the individual reactions may be performed at a different stage in the overall route (i.e. substituents may be added to and/or chemical transformations performed upon different intermediates to those mentioned hereinbefore in conjunction with a particular reaction). This may negate, or render necessary, the need for protecting groups. Persons skilled in the art will appreciate that chiral isomers of compounds herein can be resolved at any stage in the synthetic process using chiral resolving agents described in the literature and known to person skilled in the art, or using chiral chromatography methods described in the literature and known to person skilled in the art. Stereo centers may also be introduced by asymmetric synthesis. All stereoisomers are included within the scope of the disclosure. Persons skilled in the art will appreciate that starting materials for any of the above processes can in some cases be commercially available. Persons skilled in the art will appreciate that processes for some starting materials above could be found in the general common knowledge. It will also be understood that some of the compounds described in the processes above may exhibit the phenomenon of tautomerism and the processes described above include any tautomeric form. All novel intermediates form a further aspect of the disclosure. EXPERIMENTAL SECTION NMR peak forms are stated as they appear in the spectra, possible higher order effects have not been considered. The following table lists the abbreviations used in this paragraph and in the examples section as far as they are not explained within the text body. Other abbreviations have their meanings customary per se to the skilled person. Abbreviations uA Adenosine AH AminoHexyl ACN Acetonitrile AcOH Acetic acid
ASO Antisense oligonucleotide aq Aqueous Avi AviTagTM Boc tert-Butoxycarbonyl Brine Saturated aqueous sodium chloride solution Bu Butyl tBu tert-Butyl tBuBrettPhos Di-tert-butyl(2',4',6'-triisopropyl-3,6-dimethoxy-[1,1'-biphenyl]-2-yl)phosphine n-BuOH 1-Butanol tBuXPhos Pd G3 [(2-Di-tert-butylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)-2-(2′-amino- 1,1′-biphenyl)] palladium(II) methanesulfonate (CAS Reg. No.1447963-75-8)C Cytosine 5meC 5-Methylcytosine calcd Calculated CataCXium A Di(adamantan-1-yl)(butyl)phosphane (CAS Reg. No.321921-71-5) CataCXium A Pd G3 Methanesulfonato(diadamantyl-n-butylphosphino)-2'-amino-1,1'- biphenyl-2-yl)palladium(II) precatalyst generation 3 (CAS Reg. No. 1651823-59-4) CDI 1,1-Carbonyldiimidazole CHAPS 3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate CO2 Carbon dioxide m-CPBA 3-Chlorobenzoperoxoic acid cPs Centipoises DCM Dichloromethane DCE Dichloroethane DCM Dichloromethane DIPEA N-Ethyl-N-isopropyl-propan-2-amine DMA N,N-Dimethylacetamide DMAP N,N-Dimethylpyridin-4-amine DMCDA rel-(1R,2R)-N1,N2-Dimethylcyclohexane-1,2-diamine DME 1,2-Dimethoxyethane DMF N,N-Dimethylformamide DMSO Dimethyl sulfoxide DNA Deoxyribonucleic acid Dppf 1,1'-Bis(diphenylphosphino)ferrocene dR Deoxyribose EDC 3-(((Ethylimino)methylene)amino)-N,N-dimethylpropan-1-amine hydrochloride eq Equivalent(s)
ESI Electrospray ionization Et Ethyl Et2O Diethyl ether EtOAc Ethyl acetate EtOH Ethanol FA Formic acid G Guanosine (g) Gas GalNAc N-acetylgalactosamine GalNAc THA GalNAc TrisHexylAmine G2 Generation 2 G3 Generation 3 HA Hexylamine HATU (1-(Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium-3-oxo hexafluorophosphate HEPES (4-(2-Hydroxyethyl)-1-piperazineethanesulfonic acid) HPLC High performance liquid chromatography HPMC Hydroxypropyl methylcellulose HRMS High resolution mass spectrometry IC50 Half maximal inhibitory concentration iPrOH Isopropanol K2CO3 Potassium carbonate ka Association rate constant (also written kon) KD Dissociation constant kd Dissociation rate constant (also written koff) LC Liquid chromatography LG Leaving group LiAlH4 Lithium aluminium hydride LNA Locked Nucleic Acid Me CH3 MeCN Acetonitrile MeOH Methanol MMTr-ON MMTr-protected oligonucleotide MS Mass spectrometry MTBD 7-Methyl-1,5,7-triazabicyclo[4.4.0]dec-5-ene MTBE Methyl tert-butyl ether m/z Mass to charge ratio NaCl Sodium chloride
NaH Sodium hydride NaOAc Sodium acetate NaOH Sodium hydroxide NaOtBu Sodium tert-butoxide Na2SO4 Sodium sulfate NMP 1-Methylpyrrolidin-2-one NMR Nuclear magnetic resonance OAc O(CO)CH3 OEt OCH2CH3 OTf Trifluoromethanesulfonate OtBu OC(CH3)3 P Phosphate PBS Phosphate buffered saline Pd/C Palladium on charcoal Pd2(dba)3 Tris(dibenzylideneacetone)dipalladium(0) Pd(dppf)Cl2•DCM [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) CH2Cl2 (1:1) Pd(dtbpf)Cl2 [1,1′-Bis(di-tert-butylphosphino)ferrocene]dichloropalladium(II) PDL Poly-D-Lysine Pd(OAc)2 Palladium (II) acetate Pd-PEPPSI-IpentCl 2-methylpyridine (SP-4-1)-[1,3-Bis[2,6-bis(1-ethylpropyl)phenyl]-4,5- dichloro-1,3-dihydro-2H-imidazol-2-ylidene]dichloro(2-methylpyridine)palladium (CAS Reg. No.1612891-29-8) Pd(PPh3)4 Pd[(C6H5)3P]4 PE Petroleum ether PG Protective group Ph Phenyl PMB Paramethoxybenzyl PPh3 Triphenylphosphane PS80 Polysorbate 80 pTSA 4-Methylbenzenesulfonic acid qToF Quadrupole time-of-flight Rmax Maximum observed binding signal rt Room temperature RU Response unit(s) (s) Solid sat Saturated SFC Supercritical fluid chromatography
SNAr Nucleophilic aromatic substitution sP Thiophosphate SPR Surface Plasmon Resonance T Thymine tBuBrettPhos G3 2-(Di-tert-butylphosphino)-2′,4′,6′- triisopropyl-3,6-dimethoxy-1,1′- biphenyl)-2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate (CAS Reg. No.1536473-72-9) TCDI Di(1H-imidazol-1-yl)methanethione TEA Triethylamine TFA Trifluoroacetic acid TFAA 2,2,2-Trifluoroacetic anhydride THF Tetrahydrofuran TMEDA N1,N1,N2,N2-Tetramethylethane-1,2-diamine TLC Thin layer chromatography Ts Tosyl or 4-methylbenzenesulfonyl TsCl 4-Methylbenzenesulfonyl chloride TsOH para-Toluenesulfonic acid UPLC Ultra performance liquid chromatography UV Ultraviolet XPhos Dicyclohexyl(2',4',6'-triisopropyl-[1,1'-biphenyl]-2-yl)phosphane XPhos Pd G2 Chloro(2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino- 1,1′-biphenyl)]palladium(II) (CAS Reg. No 1310584-14-5) XantPhos 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene, or (9,9-dimethyl-9H- xanthene-4,5-diyl)bis(diphenylphosphine) Units Å Ångström atm atmosphere C Celcius g gram h hour(s) L litre M mole per liter mg milligram MHz megahertz min minute(s) mL milliliter mm millimeter
mol mole mmol millimole(s) µCi microcurie µm micrometer µmol micromole(s) µL microlitre nm nanometer ppm parts per million s second(s) v/v volume by volume W watt w/v weight by volume The various embodiments described in this application are illustrated by the following examples which are not meant to limit the compound of Formula (I) in any way. The example testing experiments described herein serve to illustrate the present embodiments and is not limited to the examples given. EXPERIMENTAL SECTION – GENERAL PART General conditions (i) operations were carried out at room temperature (rt), i.e. in the range 17 to 28°C and where needed under an atmosphere of an inert gas such as N2 or Ar; optionally reactions were carried out using a MBRAUN UNILab Plus ECO or a MBRAUN UNILab SP Eco glovebox workstation, in which case it is indicated; (ii) where reactions refer to being degassed or purged, this can be performed for example by purging the reaction solvent with a constant flow of nitrogen for a suitable period of time (for example 5 to 10 min) or by repeatedly evacuating the vessel and backfill with appropriate inert atmosphere (for example N2(g) or Ar(g)); (iii) where reactions refer to the use of a microwave reactor, one of the following microwave reactors were used: Biotage Initiator, Personal Chemistry Emrys Optimizer, Personal Chemistry Smith Creator or CEM Explorer; (iv) in general, the course of reactions was followed by thin layer chromatography (TLC) and/or analytical high performance liquid chromatography (HPLC or UPLC) which was usually coupled to a mass spectrometer (LCMS). (v) when necessary, organic solutions were dried over anhydrous MgSO4 or Na2SO4, or by using ISOLUTE® Phase Separator, and work-up procedures were carried out using traditional phase separating techniques. When a drying agent such as e.g. MgSO4 or Na2SO4 is
used for drying an organic layer, it is understood that said organic layer is filtered before concentration of said layer. (vi) it is understood that washing solutions used in the work-up procedures or reagent used for acidifying such as e.g. brine (sat aq NaCl solution), NaHCO3, NH4Cl, HCl, NaH2PO4 are presumed to be aqueous solutions unless otherwise stated; (vii) evaporations were carried out either by rotary evaporation in vacuo or in a Genevac HT-4 / EZ-2 or Biotage V10; (viii) unless otherwise stated, flash column chromatography was performed on normal phase silica, using either Merck Silica Gel (Art.9385) or prep-packed cartridges such as Biotage® SNAP cartridges (40-63 μm silica, 4–330 g), Biotage® Sfär Silica HC D cartridges (20 µm, 10–100 g), Interchim puriFlash™ cartridges (25 µm, 4–120 g), Interchim puriFlash™ cartridges (50 µm, 25–330 g), Grace™ GraceResolv™ Silica Flash Cartridges (4–120 g) or Agela Flash Colum Silica-CS cartridges (80–330 g), or on reversed phase silica using Agela Technologies C-18, spherical cartridges (20–35 µm, 100 A, 80–330 g), manually or automated using a Grace Reveleris® X2 Flash system or similar system; (ix) purification using ion exchange columns were performed on standard ion exchange columns e.g. ISOLUTE SCX-2 columns from Biotage; (x) preparative reversed phase HPLC and preparative reversed phase SFC were performed using standard HPLC and SFC instruments, respectively, equipped with either a MS and/or UV triggered fraction collecting instrument, using either isocratic or a gradient of the mobile phase as described in the experimental section and using one of the following methods: PrepMethod A: The compound was purified by preparative HPLC on a XBridge™ C18 OBD column (5 μm, 150×30 mm ID) using a gradient of MeCN in a H2O/NH4HCO3 (10 mM)/NH3 (0.1%, aq) buffer system as mobile phase; PrepMethod B: The compound was purified by preparative HPLC on a Waters Xselect CSH C18 OBD column (5 µm, 150×30 mm ID) using a gradient of MeCN in a H2O/NH4HCO3 (10 mM)/NH3 (0.05%, aq) buffer system as mobile phase; PrepMethod C: The compound was purified by preparative HPLC on a XBridge™ C18 column (10 μm, 250×50 mm ID) using a gradient of MeCN in H2O/MeCN/NH3 (95/5/0.2) buffer system as mobile phase; PrepMethod D: The compound was purified by preparative HPLC on a XBridge C18 OBD column (5 µm, 250×19 mm ID) using a gradient of MeCN in H2O/FA (0.1%) buffer system as mobile phase; PrepMethod E: The compound was purified by preparative HPLC on a Waters Xselect CSH C18 OBD column (8 µm, 150×30 mm ID) using a gradient of MeCN in H2O/FA (0.1%) buffer system as mobile phase;
PrepMethod F: The compound was purified by preparative HPLC on a Waters Xselect CSH C18 OBD column (5 µm, 150×30 mm ID) using a gradient of MeCN in H2O/FA (0.1%) buffer system as mobile phase. PrepMethod G: The compound was purified by preparative HPLC on a Waters Xselect CSH Prep Fluoro-phenyl OBD column (5 µm, 150×30 mm ID) using a gradient of MeCN in H2O/FA (0.1%) buffer system as mobile phase. PrepMethod H: The compound was purified by preparative HPLC on a XBridge C18 OBD column (3.5 µm, 75×30 mm ID) using a gradient of MeCN in a H2O/NH4HCO3 (10 mM)/NH3 (0.05%, aq) buffer system as mobile phase. PrepMethod I: The compound was purified by preparative HPLC on a YMC-Actus Triart C18 ExRs column (5 μm, 150×30 mm ID) using a gradient of MeCN in H2O/NH4HCO3 (10 mM)/NH3 (0.05%, aq) buffer system as mobile phase. PrepMethod J: The compound was purified by preparative HPLC on a XBridge™ C18 OBD column (5 μm, 150×30 mm ID) using a gradient of MeCN in a H2O/NH4HCO3 (10 mM)/NH3 (0.05%, aq) buffer system as mobile phase. PrepMethod K: The compound was purified by preparative HPLC on a Waters Xselect CSH C18 OBD column (5 µm, 250×19 mm ID) using a gradient of MeCN in a H2O/NH4HCO3 (10 mM)/NH3 (0.05%, aq) buffer system as mobile phase; Relevant fractions were collected, combined, and freeze-dried or evaporated to give the purified compound or relevant fractions were collected, combined, and concentrated at reduced pressure, the aqueous layer was extracted with DCM or EtOAc, and the organic layer was dried, either over Na2SO4 or by using a phase-separator, and then concentrated at reduced pressure and when needed dried in vacuo, to give the purified compound. (xi) yields, where present, are not necessarily the maximum attainable, and when necessary, reactions were repeated if a larger amount of the reaction product was required; (xii) where certain compounds were obtained as an acid-addition salt, for example a mono-hydrochloride salt or a di-hydrochloride salt, the stoichiometry of the salt was based on the number and nature of the basic groups in the compound, the exact stoichiometry of the salt was generally not determined, for example by means of elemental analysis data; where stated the salts were treated according to literature-known processes to generate the corresponding free base prior to being used; (xiii) in general, the structures of the end-products of the Formula (I) were confirmed by NMR and/or mass spectral techniques; proton NMR chemical shift values were measured on the delta scale using Bruker Avance III 300, 400, 500 and 600 spectrometers, operating at 1H frequencies of 300, 400, 500 and 600 MHz, respectively. The experiments were typically recorded at 25 °C. Chemical shifts are given in ppm with the solvent as internal reference. Protons on heteroatoms such as NH and OH protons are only reported when detected in NMR
and can therefore be missing.19F spectra are recorded with proton decoupling. In certain instances, protons can be masked or partially masked by solvent peaks and will therefore either be missing and not reported or reported as multiplets overlapping with solvent. The following abbreviations have been used (and derivatives thereof), e.g. s, singlet; d, doublet; t, triplet; q, quartet; m, multiplet; br, broad; qn, quintet; p, pentet; h heptet; dd, doublet of doublets, etc. It is understood, where the NMR spectra contains residual impurities and/or residual solvent(s), this is not reported unless it partially coincides with peaks of intermediates and/or structures of Formula (I), in which case said peaks of intermediates and/or structures of Formula (I) are reported as multiplets partially overlapping with said solvent or impurity, and the integral is omitted. In some cases, compounds of Formula (I) appear as tautomers in the NMR-spectrum, in which instances only peaks of the major tautomer are reported. In some cases, compounds of Formula (I) appear as tautomers in a more equal relationship, in such instances the peaks of such tautomers are either reported as multiplets, if the signals of said tautomer are partially overlapping with other peaks, or as individual peaks, if the signals of said tautomers are well separated. The integral of such peaks are reported as fractions of protons, indicating the ratio of the tautomer in the mixture. (xiv) Electrospray mass spectral data were obtained using a Waters Acquity UPLC coupled to a Waters single quadrupole mass spectrometer or similar equipment, acquiring both positive and negative ion data, and generally, only ions relating to the parent structure are reported; high resolution electrospray mass spectral data were obtained using a Waters XEVO qToF mass spectrometer or similar equipment, coupled to a Waters Acquity UPLC, acquiring either positive and negative ion data, and generally, only ions relating to the parent structure are reported; (xv) intermediates were not necessarily fully purified but their structures and purity were assessed by TLC, analytical HPLC/UPLC, and/or NMR analysis and/or mass spectrometry; (xvi) in general Examples and intermediate compounds are named using ChemDraw Professional version 20.1.1.125 or version 21.0.0 from PerkinElmer. ChemDraw Professional version 20.1.1.125 or version 21.0.0 generates the names of chemical structures using the Cahn-Ingold-Prelog (CIP) rules for stereochemistry and follows IUPAC rules as closely as possible when generating chemical names. Stereoisomers are differentiated from each other by stereodescriptors cited in names and assigned in accordance with the CIP rules. Intermediates Intermediate 1 tert-Butyl ((1S,3S)-3-((5-iodopyridin-2-yl)amino)cyclopentyl)carbamate
2-Fluoro-5-iodopyridine (CAS Reg. No.171197-80-1) (2.23 g, 9.99 mmol) was added to tert- butyl ((1S,3S)-3-aminocyclopentyl)carbamate (CAS Reg. No.645400-44-8) (2.00 g, 9.99 mmol) and K2CO3 (2.76 g, 20 mmol) in DMSO (30 mL). The resulting solution was stirred at 125°C for 1 h under a nitrogen atmosphere. The reaction mixture was diluted with EtOAc (50 mL) and washed with water (3×75 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The crude material was purified by flash chromatography on silica (gradient: 0-50% EtOAc in PE) to give the title compound (2.70 g, 67%) as a pale yellow solid. MS (ESI) m/z [M+H]+ 403.9. Intermediate 2 tert-Butyl ((1S,3S)-3-((5-(2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)pyridin-2- yl)amino)cyclopentyl)carbamate
DMCDA (CAS Reg. No.67579-81-1) (0.388 g, 2.73 mmol) was added to tert-butyl ((1S,3S)-3- ((5-iodopyridin-2-yl)amino)cyclopentyl)carbamate intermediate 1 (1.10 g, 2.73 mmol), 1,3- dihydro-2H-benzo[d]imidazol-2-one (CAS Reg. No.615-16-7) (0.549 g, 4.09 mmol),Cs2CO3 (2.67 g, 8.18 mmol) and CuI (0.519 g, 2.73 mmol) in 1,4-dioxane (15 mL) at rt. The resulting mixture was stirred at 100 °C for 12 h under nitrogen. The reaction mixture was concentrated and diluted with EtOAc (200 mL), and washed sequentially with brine (3 x 75 mL). The organic layer was dried (Na2SO4), filtered and evaporated to afford crude product which was purified by preparative TLC (EtOAc: petroleum ether = 1: 5), to afford (0.84 g, 75%) of the title compound as a yellow solid. MS (ESI): m/z [M+H]+ 410.0. Intermediate 3 1-(6-(((1S,3S)-3-Aminocyclopentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2- one.2 HCl
HCl in MeOH (4 M, 5 mL, 20 mmol) was added to tert-butyl ((1S,3S)-3-((5-(2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-1-yl)pyridin-2-yl)amino)cyclopentyl)carbamate intermediate 2 (840 mg, 2.05 mmol) in MeOH (10 mL) at rt and the resulting mixture was stirred at 60 °C for 3 h. The solvent was removed under reduced pressure to afford (560 mg, 88%) of the title compound as yellow solid. MS (ESI): m/z [M+H]+ 309.9. Intermediate 4 N-(6-Chloropyridin-3-yl)-3-nitropyridin-2-amine
Pd2(dba)3 (861 mg, 0.94 mmol) was added to 2-chloro-5-iodopyridine (CAS Reg. No.69045-79- 0) (3.00 g, 12.5 mmol), 2-amino-3-nitropyridine (CAS Reg. No.4214-75-9) (1.74 g, 12.5 mmol), XantPhos (CAS Reg. No.161265-03-8) (1.09 g, 1.88 mmol) and Cs2CO3 (6.12 g, 18.8 mmol) were taken up in 1,4-dioxane (60 mL) at rt under nitrogen and the mixture then stirred at 80 °C for 15 h. The reaction mixture was filtered through a pad of Celite, washed with EtOAc (200 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by flash chromatography on silica (gradient: 2-10% EtOAc in PE) to give the title compound (3.00 g, 96%) as a yellow solid. MS (ESI): m/z [M+H]+ 251/253 (Cl isotope pattern). Intermediate 5 N2-(6-chloropyridin-3-yl)pyridine-2,3-diamine
Zinc powder (7.83 g, 120 mmol) was added to N-(6-chloropyridin-3-yl)-3-nitropyridin-2-amine intermediate 4 (5 g, 20 mmol) and NH4Cl (10.7 g, 200 mmol) in a mixture of EtOH (50 mL) and EtOAc (50 mL) at 20 °C and the mixture stirred at 60 °C for 15 h. The reaction mixture was filtered through a pad of Celite, the filtrate concentrated under reduced pressure and the crude
material purified by flash chromatography on silica (gradient: 50% EtOAc in PE) to give the title compound (1.70 g, 39%) as a red solid. MS (ESI): m/z [M+H]+ 221/223 (Cl isotope pattern). Intermediate 6 3-(6-Chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
N2-(6-chloropyridin-3-yl)pyridine-2,3-diamine intermediate 5 (464 mg, 2.10 mmol) was added to CDI (CAS Reg. No.530-62-1) (341 mg, 2.10 mmol) in MeCN (10 mL) at 25 °C and the mixture stirred at this temperature for 3 h. The reaction mixture was diluted with MeCN (15 mL) and the formed solid collected by filtration. The material was dried under vacuum to give the title compound (362 mg, 70%) as a grey solid which was directly used in the next step without further purification. MS (ESI): m/z [M+H]+ 247/249 (Cl isotope pattern). Intermediate 7 3-(6-Chloropyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
1-(Chloromethyl)-4-methoxybenzene (453 mg, 2.89 mmol) was added to 3-(6-chloropyridin-3- yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 6 (357 mg, 1.45 mmol) and K2CO3 (600 mg, 4.34 mmol) in DMF (4 mL) at 25 °C and the mixture stirred at this temperature for 2 h. The reaction mixture was diluted with EtOAc (75 mL) and washed with water (3 x 35 mL). The organic layer was dried over Na2SO4, filtered and evaporated and the crude material purified by preparative TLC (EtOAc : PE = 2 : 1) to give the title compound (523 mg, 99%) as a brown solid. MS (ESI): m/z [M+H]+ 367/369 (Cl isotope pattern). Intermediate 8 tert-Butyl ((1S,3S)-3-((5-(1-(4-methoxybenzyl)-2-oxo-1,2-dihydro-3H-imidazo[4,5-b]pyridin- 3-yl)pyridin-2-yl)amino)cyclopentyl)carbamate
tert-Butyl ((1S,3S)-3-aminocyclopentyl)carbamate (CAS Reg. No.645400-44-8) (328 mg, 1.64 mmol) was added to 3-(6-chloropyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H- imidazo[4,5-b]pyridin-2-one intermediate 7 (300 mg, 0.82 mmol), Cs2CO3 (799 mg, 2.45 mmol) and Pd-PEPPSI-IpentCl 2-methylpyridine (34 mg, 0.04 mmol) in 1,4-dioxane (5 mL) at 25 °C. The resulting suspension was stirred at 100 °C for 18 h under a nitrogen atmosphere. The reaction mixture was filtered through celite, the filter cake washed with DCM (2 x 5 mL) and the combined filtrates concentrated under reduced pressure. The obtained crude product was purified py preparative TLC (EtOAc) to give the title compound (434 mg, 100%) as a white solid. MS (ESI): m/z [M+H]+ 531.4. Intermediate 9 3-(6-(((1S,3S)-3-Aminocyclopentyl)amino)pyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro- 2H-imidazo[4,5-b]pyridin-2-one
TFA (5 mL, 65 mmol) was added to tert-butyl ((1S,3S)-3-((5-(1-(4-methoxybenzyl)-2-oxo-1,2- dihydro-3H-imidazo[4,5-b]pyridin-3-yl)pyridin-2-yl)amino)cyclopentyl)carbamate intermediate 8 (425 mg, 0.80 mmol) in DCM (30 mL) at 25 °C and the reaction mixture stirred at this temperature for 2 h. The mixture was concentrated under reduced pressure and the obtained material purified by C18-flash chromatography (elution gradient: 0-100% MeCN in 0.05% aq NH3) to give the title compound (336 mg, 97%) as a brown gum. MS (ESI): m/z [M+H]+ 431.1. Intermediate 10 3-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
Pd-PEPPSI-IpentCl 2-methylpyridine (24 mg, 0.03 mmol) was added to 3-(6-(((1S,3S)-3- aminocyclopentyl)amino)pyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5- b]pyridin-2-one intermediate 9 (250 mg, 0.58 mmol), 2-chloro-5-(difluoromethoxy)pyrimidine (CAS Reg. No.1192813-64-1) (210 mg, 1.16 mmol) and Na2CO3 (369 mg, 3.48 mmol) in DMF (15 mL) at 25 °C and the resulting mixture was stirred at 100 °C for 8 h under a nitrogen atmosphere. The reaction mixture was poured into brine (75 mL) and extracted with EtOAc (3 x 50 mL). The combined organic layers were washed with brine (3 x 50 mL), dried (Na2SO4), filtered and evaporated to afford the crude product. The residue was purified by preparative TLC (EtOAc : PE = 3 : 2) to give the title compound (200 mg, 60%) as a white solid. MS (ESI): m/z [M+H]+ 575.1H NMR (300 MHz, DMSO-d6) δ ppm 1.49 – 1.62 (2H, m), 1.87 – 1.99 (2H, m), 2.06 – 2.22 (2H, m), 3.73 (3H, s), 4.30 – 4.37 (2H, m), 5.76 (2H, s), 6.60 (1H, d), 6.90 – 6.94 (3H, m), 7.04 (1H, t), 7.09 (1H, dd), 7.29 – 7.35 (2H, m), 7.49 – 7.56 (3H, m), 7.92 – 7.96 (1H, m; partially covered by residual DMF), 8.13 (1H, d), 8.25 (2H, s). Intermediate 11 6-Chloro-N-(2-nitropyridin-3-yl)pyridin-3-amine
2-Chloro-5-iodopyridine (6.2 g, 25.9 mmol) was added to 2-nitropyridin-3-amine (3.0 g, 22 mmol), Pd2(dba)3 (0.197 g, 0.22 mmol), Cs2CO3 (10.5 g, 32.4 mmol) and Xantphos (0.624 g, 1.08 mmol) in 1,4-dioxane (100 mL) at 15 °C. The mixture was stirred at 80 °C for 15 h under a N2 (g) atmosphere. The reaction mixture was poured into water (250 mL) and extracted with EtOAc (4 x 200 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The crude residue was purified by column chromatography on silica (gradient: 0-40% EtOAc in PE) to give the title compound (4.1 g, 76%) as a brown solid; MS (ESI) m/z [M+H]+ 250.8. Intermediate 12 N3-(6-Chloropyridin-3-yl)pyridine-2,3-diamine
4,4'-Bipyridine (0.012 g, 0.08 mmol) was added to 6-chloro-N-(2-nitropyridin-3-yl)pyridin-3- amine intermediate 11 (2.0 g, 7.98 mmol) and hypodiboric acid (CAS Reg. No.13675-18- 8)(2.86 g, 31.9 mmol) in DMF (80 mL) at 20 °C. The mixture was stirred at 20 °C for 5 min, then filtered through Celite. The filtrate was poured into sat. brine (250 mL) and extracted with EtOAc (6 x 200 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The residue was purified by preparative TLC (100% EtOAc) to give the title compound (1.4 g, 80%) as a yellow solid. MS (ESI) m/z [M+H]+ 220.9. Intermediate 13 1-(6-Chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
Bis(trichloromethyl) carbonate (CAS Reg. No.32315-10-9) (1.936 g, 6.53 mmol) was added in portions to N3-(6-chloropyridin-3-yl)pyridine-2,3-diamine intermediate 12 (1.2 g, 5.44 mmol), Et3N (7.6 mL, 54 mmol) and DMAP (0.332 g, 2.72 mmol) in THF (100 mL) at 0 °C. The solution was stirred at 60 °C for 15 h. The reaction was poured into sat NaHCO3 (250 mL) and extracted with EtOAc (3 x 200 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The crude solid was triturated with EtOAc (20 mL), collected by filtration and dried under vacuum to give the title compound (1 g, 74%) as a brown solid. MS (ESI) m/z [M+H]+ 246.9. Intermediate 14 1-(6-Chloropyridin-3-yl)-3-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
1-(Chloromethyl)-4-methoxybenzene (stabilized with CaCO3, 0.952 g, 6.08 mmol) was added slowly to 1-(6-chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (1.0 g, 4.05 mmol) and K2CO3 (1.12 g, 8.11 mmol) in DMF (15 mL) at 20 °C. The mixture was
stirred at 60 °C for 2 h, subsequently poured into brine (150 mL) and extracted with EtOAc (3 x 100 mL). The combined organic layers were washed with brine (3 x 100 mL), dried over Na2SO4, filtered and evaporated. The crude solid was triturated with PE:EtOAc = 2:1 (20 mL), collected by filtration and dried under vacuum to give the title compound (1.05 g, 71%) as a pale-yellow solid. MS (ESI) m/z [M+H]+ 366.9. Intermediate 15 tert-Butyl ((1S,3S)-3-((5-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin- 1-yl)pyridin-2-yl)amino)cyclopentyl)carbamate
Pd-PEPPSI-IpentCl 2-methylpyridine (34.4 mg, 0.04 mmol) was added to 1-(6-chloropyridin-3- yl)-3-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 14 (300 mg, 0.82 mmol), tert-butyl ((1S,3S)-3-aminocyclopentyl)carbamate (180 mg, 0.90 mmol) and Cs2CO3 (533 mg, 1.64 mmol) in 1,4-dioxane (20 mL) at 20 °C. The suspension was stirred at 100 °C for 18 h under a N2 (g) atmosphere. The reaction mixture was diluted with EtOAc (250 mL) and washed sequentially with water (3 x 125 mL). The organic layer was dried over Na2SO4, filtered, and evaporated. The residue was purified by preparative TLC (7 M NH3 in MeOH:DCM,1:20) to give the title compound (310 mg, 71%) as a yellow solid. MS (ESI) m/z [M+H]+ 531.3. Intermediate 16 1-(6-(((1S,3S)-3-Aminocyclopentyl)amino)pyridin-3-yl)-3-(4-methoxybenzyl)-1,3-dihydro- 2H-imidazo[4,5-b]pyridin-2-one
HCl in MeOH (4 M, 2 mL, 8.00 mmol) was added to tert-butyl ((1S,3S)-3-((5-(3-(4- methoxybenzyl)-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-1-yl)pyridin-2- yl)amino)cyclopentyl)carbamate intermediate 15 (300 mg, 0.57 mmol) in MeOH (8 mL) at 20 °C. The suspension was stirred at 60 °C for 2 h. The solvent was removed under reduced
pressure to give an unspecified HCl salt of the crude title compound (330 mg)brown solid. MS (ESI) m/z [M+H]+ 431.2. Intermediate 17 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-3-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
1-(6-(((1S,3S)-3-Aminocyclopentyl)amino)pyridin-3-yl)-3-(4-methoxybenzyl)-1,3-dihydro-2H- imidazo[4,5-b]pyridin-2-one intermediate 16 (243 mg, 0.56 mmol) was added to 2-chloro-5- (difluoromethoxy)pyrimidine (85 mg, 0.47 mmol), Pd-PEPPSI-IpentCl 2-methylpyridine (20 mg, 0.02 mmol) and Cs2CO3 (460 mg, 1.41 mmol) in DMF (15 mL) at 15 °C under a N2 (g) atmosphere. The resulting mixture was stirred at 100 °C for 15 h. The reaction mixture was poured into brine (125 mL) and extracted with EtOAc (4 x 100 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The residue was purified by preparative TLC (7 M NH3 in MeOH:DCM = 1:15) to give the title compound (130 mg, 48%) as a yellow solid. MS (ESI) m/z [M+H]+ 575.3. Intermediate 18 tert-Butyl ((1S,3S)-3-((1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate
m-CPBA (5.60 g, 25.95 mmol) was added in small portions to a solution of 3-(methylthio)-1,2,4- triazine (CAS Reg. No.28735-21-9) (3.0 g, 23.6 mmol) in DCM (80 mL) at 0 °C and the resulting suspension was stirred at 20 °C for 2 h. The solvent was removed under reduced pressure without heating, the residue dissolved in n-butanol (40 mL) and tert-butyl ((1S,3S)-3- aminocyclopentyl)carbamate (CAS Reg. No.645400-44-8) (5.20 g, 26.0 mmol) was added and the resulting solution was stirred at 120 °C for 18 h. The reaction mixture was poured into 1 M NaOH (250 mL) and extracted with EtOAc (3 x 200 mL). The combined organic layers were dried (Na2SO4), filtered and evaporated to afford the crude product as a brown solid which was
purified by flash chromatography on silica (gradient: 5-60% EtOAc in PE) to give (3.7 g, 56%) of the title compound as a yellow solid. MS (ESI): m/z [M+H]+ 280. Intermediate 19 tert-Butyl ((1S,3S)-3-((6-bromo-1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate
A solution of Br2 in DCM (1 M, 15.9 mL, 15.9 mmol) was added dropwise to a solution of tert- butyl ((1S,3S)-3-((1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate intermediate 18 (3.7 g, 13.2 mmol) in a mixture of MeOH (60 mL) and water (30 mL) and the mixture was stirred at rt for 15 h. The solvent was removed under reduced pressure and the residue was poured into sat. Na2SO3(aq) (150 mL) and extracted with EtOAc (3 x 100 mL). The organic layer was dried (Na2SO4), filtered and evaporated to afford the crude product as brown solid which was purified by flash chromatography on silica (gradient: 5-30% EtOAc in PE) to give (3.5 g, 74%) of the title compound as a yellow solid. MS (ESI): m/z [M+H]+ 358. Intermediate 20 tert-Butyl ((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate
tert-Butyl ((1S,3S)-3-((6-bromo-1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate intermediate 19 (300 mg, 0.84 mmol) was added to 2,4,6-trimethyl-1,3,5,2,4,6-trioxatriborinane in THF (2.10 g, 8.37 mmol), K3PO4 (356 mg, 1.67 mmol) and 1,1'-bis(di-tert-butylphosphino)ferrocene palladium dichloride (CAS Reg. No.95408-45-0) (55 mg, 0.08 mmol) in a mixture of dioxane (4 mL) and water (1 mL) at 20 °C. The resulting mixture was stirred at 100 °C for 15 h under a nitrogen atmosphere. The reaction mixture was poured into brine (150 mL) and extracted with EtOAc (4 x 100 mL). The combined organic layers were dried (Na2SO4), filtered and evaporated to afford the crude product. The residue was first purified by preparative TLC (MeOH : DCM = 1:20) followed by C18-flash chromatography (gradient: 0-49% MeOH in water) the title compound (103 mg, 42%) as a brown solid. MS (ESI): m/z [M+H]+ 294. Intermediate 21 (1S,3S)-N1-(6-Methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine.2TFA
tert-Butyl ((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)carbamate intermediate 20 (100 mg, 0.34 mmol) was added to a mixture of TFA (5 mL) in DCM (5 mL) at 20 °C and it was stirred at this temperature for 15 h. The reaction mixture was concentrated under reduced pressure to afford (100 mg, 95%) of the title compound as a white solid. MS (ESI): m/z [M+H]+ 194. Intermediate 22 (1S,3S)-N1-(5-Iodopyridin-2-yl)-N3-(6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine
2-Fluoro-5-iodopyridine (CAS Reg. No.171197-80-1) (203 mg, 0.91 mmol) was added to a mixture of the 2HCl salt of (1S,3S)-N1-(6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 (220 mg, 0.83 mmol) and Na2CO3 (263 mg, 2.48 mmol) in DMSO (15 mL). The resulting mixture was stirred at 100 °C for 15 h under a nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure and the obtained material was taken up with EtOAc (300 mL). The organic layer was washed with brine (4 x 125 mL), dried over Na2SO4, filtered and evaporated and the crude material was purified by preparative TLC (EtOAc : PE = 1:1) to give the title compound (140 mg, 43%) as a pale yellow solid. MS (ESI): m/z [M+H]+ 396.7.1H NMR (300 MHz, DMSO-d6) δ ppm 1.39 – 1.59 (2H, m), 1.79 – 1.95 (2H, m), 2.06 – 2.16 (2H, m), 2.37 (3H, s), 4.17 – 4.39 (2H, m), 6.37 (1H, dd), 6.83 (1H, d), 7.53 – 7.59 (2H, m), 8.10 (1H, d), 8.16 (1H, s). Intermediate 23 tert-Butyl ((1S,3S)-3-([1,2,4]triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)carbamate
2-Bromo-[1,2,4]triazolo[1,5-a]pyridine (CAS Reg. No.1021019-03-3) (0.7 g, 3.53 mmol), tert- butyl ((1S,3S)-3-aminocyclopentyl)carbamate (CAS Reg. No. 645400-44-8) (0.721 g, 3.60 mmol), Pd2(dba)3 (0.324 g, 0.35 mmol), Xantphos (0.409 g, 0.71 mmol), NaOtBu (0.679 g, 7.07 mmol) and 1,4-dioxane (15 mL) was mixed at rt in a microwave vial. The vial was capped
and the mixture was stirred at 145 °C for 30 min in a microwave oven. The reaction mixture was cooled to rt and filtered through a small silica plug. The plug was washed with EtOAc:MeOH = 95:5 and the filtrate was concentrated under reduced pressure. The residue was purified by normal phase chromatography on silica (gradient: 60-100% EtOAc in heptane) to give the title compound (0.36 g, 32%) as a light-yellow solid. MS (ESI) m/z [M+H]+ 318.3. Intermediate 24 (1S,3S)-N1-([1,2,4]Triazolo[1,5-a]pyridin-2-yl)cyclopentane-1,3-diamine.2TFA
tert-Butyl ((1S,3S)-3-([1,2,4]triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)carbamate intermediate 23 (0.91 g, 2.87 mmol) was dissolved in DCM (11 mL) and TFA (3.7 mL) was added at rt. The reaction was stirred for 1 h. Toluene was added, and the resulting mixture was concentrated under reduced pressure. The oil was dissolved in MeOH, and toluene was added. The solvent was evaporated under reduced pressure. This was repeated one more time to give crude title compound (1.48 g) as a brown syrup. MS (ESI) m/z [M+H]+ 217.0. Intermediate 25 (1S,3S)-N1-([1,2,4]Triazolo[1,5-a]pyridin-2-yl)-N3-(5-iodopyridin-2-yl)cyclopentane-1,3- diamine
(1S,3S)-N1-([1,2,4]Triazolo[1,5-a]pyridin-2-yl)cyclopentane-1,3-diamine 2TFA intermediate 24 (1.2 g, 2.71 mmol), 2-fluoro-5-iodopyridine (1.21 g, 5.41 mmol), K2CO3 (1.87 g, 13.5 mmol) and DMSO (9 mL) were mixed in a flask and the mixture was heated at 100 °C for 20 h. The mixture was filtered over Celite, and the plug was washed with DMSO. The filtrate was evaporated and EtOAc (150 mL) and brine were added to the residue. The phases were separated, the organic layer was washed with brine (x 2), dried over Na2SO4, filtered and evaporated under reduced pressure. The residue was further purified by flash chromatography on silica (gradient: 50-100% EtOAc in heptane) to give the title compound (0.742 g, 65%) as a light-beige foam. MS (ESI) m/z [M+H]+ 421.2. Intermediate 26 1-(6-Chloropyridin-3-yl)-3-methyl-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
A mixture of 1-(6-chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (780 mg, 3.16 mmol) and K2CO3 (1.31 g, 9.49 mmol) in DMF (20 mL) was treated with iodomethane (395 µL, 6.32 mmol) at 20 °C under nitrogen and it was stirred at 60 °C for 3 h. The reaction mixture was diluted with sat. brine (150 mL) and extracted with EtOAc (3 x 100 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated and the crude material purified by preparative TLC (EtOAc) to give the title compound (802 mg, 97%) as a white solid. MS (ESI): m/z [M+H]+ 261.0/263 (Cl isotope pattern). Intermediate 27 tert-Butyl ((1S,3S)-3-((5-(trifluoromethyl)pyrimidin-2-yl)amino)cyclopentyl)carbamate
2-Chloro-5-(trifluoromethyl)pyrimidine (1 g, 5.48 mmol) was added to Na2CO3 (0.871 g, 8.22 mmol) and tert-butyl ((1S,3S)-3-aminocyclopentyl)carbamate (1.152 g, 5.75 mmol) in DMSO (12 mL) at 25 °C and the suspension was stirred at 100 °C for 3 h. The reaction mixture was diluted with sat. brine (350 mL) and washed sequentially with EtOAc (3 x 250 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The crude solid was triturated with EtOAc:PE, 20:1 (42 mL), collected by filtration and dried under vacuum to give the title compound (1.8 g, 95%) as a white solid. MS (ESI) m/z [M+H]+ 347.15. Intermediate 28 (1S,3S)-N1-(5-(Trifluoromethyl)pyrimidin-2-yl)cyclopentane-1,3-diamine x HCl
HCl in MeOH (4 M, 6.5 mL, 26 mmol) was added dropwise to tert-butyl ((1S,3S)-3-((5- (trifluoromethyl)pyrimidin-2-yl)amino)cyclopentyl)carbamate intermediate 27 (1.8 g, 5.2 mmol) in MeOH (20 mL) at 30 °C. The reaction mixture was stirred at 60 °C for 3 h. The solvent was removed under reduced pressure to give crude title compound (0.927 g, 63%) as a white solid. MS (ESI) m/z [M+H]+ 247.1.
Intermediate 29 1-(6-Chloro-5-fluoropyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one
DMCDA (CAS Reg. No.67579-81-1) (442 mg, 3.11 mmol) was added to 2-chloro-3-fluoro-5- iodopyridine (CAS Reg. No.153034-99-2) (800 mg, 3.11 mmol), 1,3-dihydro-2H- benzo[d]imidazol-2-one (CAS Reg. No.615-16-7) (834 mg, 6.22 mmol), Cs2CO3 (3.04 g, 9.32 mmol) and CuI (592 mg, 3.11 mmol) in 1,4-dioxane (80 mL) at 15 °C under nitrogen. The resulting mixture was stirred at 100 °C for 15 h. The reaction mixture was filtered through a pad of Celite, the filter cake washed with DCM (3 x 50 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by preparative TLC (EtOAc) to afford the title compound (320 mg, 39%) as a white solid. MS (ESI): m/z [M+H]+ 264.1/266 (Cl isotope pattern).19F NMR (282 MHz, DMSO-d6) δ ppm -117.6. Intermediate 30 tert-Butyl ((1S,3S)-3-((5-(difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)carbamate
2-Chloro-5-(difluoromethoxy)pyrimidine (CAS Reg. No.1192813-64-1) (5.00 g, 27.7 mmol) was added to tert-butyl ((1S,3S)-3-aminocyclopentyl)carbamate (CAS Reg. No.645400-44-8) (6.10 g, 30.5 mmol) and Na2CO3 (4.40 g, 41.5 mmol) in DMSO (80 mL) at 20 °C. The resulting mixture was stirred at 100 °C for 15 h. The reaction mixture was poured into water (250 mL) and extracted with EtOAc (4 x 150 mL). The organic layers were combined and washed with sat. brine (4 x 100 mL), dried over Na2SO4, filtered and evaporated to afford crude product. The crude product was purified by flash chromatography on silica (gradient: 46-50% EtOAc in PE) to give the title compound (8.5 g, 89%) as a white solid. MS (ESI) m/z [M+H]+ 345.2. Intermediate 31 (1S,3S)-N1-(5-(Difluoromethoxy)pyrimidin-2-yl)cyclopentane-1,3-diamine
4 M HCl in MeOH (20 mL, 80 mmol) was added to tert-butyl ((1S,3S)-3-((5- (difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)carbamate intermediate 30 (8.7 g, 25 mmol) in MeOH (60 mL) at 20 °C. The resulting mixture was stirred at 60 °C for 2 h. The solvent was removed under reduced pressure to give an unspecified HCl salt of the crude title compound (9.9 g) as a white solid that was used directly without further purification. MS (ESI) m/z [M+H]+ 245.0. Intermediate 32 N-(6-Chloro-5-fluoropyridin-3-yl)-3-nitropyridin-2-amine
Pd2(dba)3 (267 mg, 0.29 mmol) was added to 2-chloro-3-fluoro-5-iodopyridine (CAS Reg. No. 153034-99-2) (1.00 g, 3.88 mmol), 2-amino-3-nitropyridine (CAS Reg. No.4214-75-9) (540 mg, 3.88 mmol), XantPhos (CAS Reg. No.161265-03-8) (337 mg, 0.58 mmol) and Cs2CO3 (1.90 g, 5.83 mmol) in 1,4-dioxane (60 mL) at 25 °C under nitrogen and it was stirred at 80 °C for 18 h. The reaction mixture was filtered through a pad of Celite, the filter cake washed with DCM (5 x 15 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by preparative TLC (EtOAc : PE = 1:2) to give the title compound (635 mg, 61%) as a yellow solid.19F NMR (282 MHz, DMSO-d6) δ ppm -118.3. Intermediate 33 N2-(6-Chloro-5-fluoropyridin-3-yl)pyridine-2,3-diamine
Tetrahydroxydiboron (CAS Reg. No.13675-18-8) (828 mg, 9.23 mmol) was added to a mixture of 4,4’-dipyridyl (CAS Reg. No.553-26-4) (36 mg, 0.23 mmol) and N-(6-chloro-5-fluoropyridin-3- yl)-3-nitropyridin-2-amine intermediate 32 (620 mg, 2.21 mmol) in DMF (10 mL) at 25 °C and it was stirred at this temperature for 10 min. The reaction mixture was concentrated under reduced pressure and the obtained material purified by flash chromatography on silica (gradient: 0-56% EtOAc in PE) to give the title compound (430 mg, 78%) as a yellow solid. MS (ESI): m/z [M+H]+ 239.0/241 (Cl isotope pattern).19F NMR (282 MHz, DMSO-d6) δ ppm -120.31. Intermediate 34
3-(6-Chloro-5-fluoropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one
CDI (CAS Reg. No.530-62-1) (1.16 g, 7.12 mmol) was added to N2-(6-chloro-5-fluoropyridin-3- yl)pyridine-2,3-diamine intermediate 33 (425 mg, 1.78 mmol) in THF (10 mL) at 25 °C and it was stirred at 60 °C for 18 h. The reaction mixture was concentrated under reduced pressure, the residue triturated with DCM (5 mL) and the formed solid collected by filtration. The material was dried under vacuum to give the title compound (331 mg, 70%) as a white solid. MS (ESI): m/z [M+H]+ 265.0/267 (Cl isotope pattern).19F NMR (282 MHz, DMSO-d6) δ ppm -118.26. Intermediate 35 3-Nitro-2-(2-(trimethylsilyl)ethoxy)pyridin-4-amine
Sodium hydride (60% in mineral oil; 2.88 g, 72.0 mmol) was added in portions to a mixture of 2- (trimethylsilyl)ethan-1-ol (CAS Reg. No.2916-68-9) (8.52 g, 72.0 mmol) and 2-chloro-3- nitropyridin-4-amine (CAS Reg. No.2789-25-5) (5.00 g, 28.8 mmol) in THF (120 mL) at 0 °C and stirred at this temperature for 1 h. The reaction mixture was subsequently heated to 70 °C and stirring continued for 12 h. The mixture was poured into sat. brine (400 mL) and the aqueous phase extracted with EtOAc (3 x 200 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The crude material was purified by flash chromatography on silica (gradient: 2-10% EtOAc in PE) to give the title compound (1.8 g, 24%) as a yellow oil which solidified upon standing. Intermediate 36 6-Chloro-N-(3-nitro-2-(2-(trimethylsilyl)ethoxy)pyridin-4-yl)pyridin-3-amine
Pd2(dba)3 (161 mg, 0.18 mmol) was added to a mixture of 2-chloro-5-iodopyridine (CAS Reg. No.69045-79-0) (647 mg, 2.70 mmol), 3-nitro-2-(2-(trimethylsilyl)ethoxy)pyridin-4-amine intermediate 35 (600 mg, 2.35 mmol), XantPhos (CAS Reg. No.161265-03-8) (204 mg, 0.35 mmol) and Cs2CO3 (1.15 g, 3.52 mmol) in 1,4-dioxane (20 mL) at 20 °C under nitrogen and it was stirred at 80 °C for 18 h. The reaction mixture was filtered through a pad of Celite and the filtrate concentrated under reduced pressure. The crude material was purified by flash chromatography on silica (gradient: 2-6% EtOAc in PE) to give the title compound (1.7 g, 66%) as a yellow solid. MS (ESI): m/z [M-H]- 365/367 (Cl isotope pattern). Intermediate 37 1-(6-Chloropyridin-3-yl)-4-(2-(trimethylsilyl)ethoxy)-1,3-dihydro-2H-imidazo[4,5-c]pyridin- 2-one
Tetrahydroxydiboron (CAS Reg. No.13675-18-8) (1.56 g, 17.4 mmol) was added to a mixture of 4,4’-dipyridyl (CAS Reg. No.553-26-4) (68 mg, 0.44 mmol) and 6-chloro-N-(3-nitro-2-(2- (trimethylsilyl)ethoxy)pyridin-4-yl)pyridin-3-amine intermediate 36 (1.60 g, 4.36 mmol) in DMF (60 mL) at 25 °C and it was stirred at this temperature for 30 min. CDI (CAS Reg. No.530-62-1) (7.07 g, 43.6 mmol) was added to the reaction mixture, it was warmed to 60 °C and stirring continued for 12 h. The mixture was cooled to rt and the formed precipitate filtered off. The filtrate was poured into sat. brine (400 mL) and the aqueous phase extracted with EtOAc (3 x 250 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The obtained residue was triturated with EtOAc:PE = 1:2 (30 mL), the formed solid collected by filtration and dried under vacuum to give the title compound (1.4 g, 88%) as a pale-yellow solid. MS (ESI): m/z [M-H]- 361/363 (Cl isotope pattern).
Intermediate 38 1-(6-Chloropyridin-3-yl)-3-(4-methoxybenzyl)-4-(2-(trimethylsilyl)ethoxy)-1,3-dihydro-2H- imidazo[4,5-c]pyridin-2-one
1-(Chloromethyl)-4-methoxybenzene (675 µL, 4.96 mmol) was added to a mixture of 1-(6- chloropyridin-3-yl)-4-(2-(trimethylsilyl)ethoxy)-1,3-dihydro-2H-imidazo[4,5-c]pyridin-2-one intermediate 37 (1.2 g, 3.31 mmol) and K2CO3 (914 mg, 6.61 mmol) in DMF (20 mL) at 20 °C and it was stirred at 60 °C for 12 h. The reaction mixture was diluted with EtOAc (400 mL) and washed with sat. brine (3 x 200 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The obtained residue was triturated with EtOAc:PE = 1:1 (30 mL), the formed solid collected by filtration and dried under vacuum to give the title compound (1.3 g, 81%) as a pale- yellow solid. MS (ESI): m/z [M+H]+ 483/485 (Cl isotope pattern). Intermediate 39 1-(6-Chloropyridin-3-yl)-3-(4-methoxybenzyl)-3,5-dihydro-1H-imidazo[4,5-c]pyridine-2,4- dione
HCl in 1,4-dioxane (4 M, 4.0 mL, 16 mmol) was added to 1-(6-chloropyridin-3-yl)-3-(4- methoxybenzyl)-4-(2-(trimethylsilyl)ethoxy)-1,3-dihydro-2H-imidazo[4,5-c]pyridin-2-one intermediate 38 (1.30 g, 2.69 mmol) in 1,4-dioxane (20 mL) at 20 °C and stirring at this temperature continued for 5 h. The solvent was removed under reduced pressure to give the crude title compound (900 mg, 87%) as a white solid. MS (ESI): m/z [M+H]+ 383/385 (Cl isotope pattern). Intermediate 40 1-(6-Chloropyridin-3-yl)-3-(4-methoxybenzyl)-5-methyl-3,5-dihydro-1H-imidazo[4,5- c]pyridine-2,4-dione
A mixture of 1-(6-chloropyridin-3-yl)-3-(4-methoxybenzyl)-3,5-dihydro-1H-imidazo[4,5-c]pyridine- 2,4-dione intermediate 39 (800 mg, 2.09 mmol) in DMF (20 mL) was treated with iodomethane (261 µL, 4.18 mmol) at 20 °C and it was stirred at 60 °C for 3 h. The reaction mixture was poured into sat. brine (50 mL) and extracted with EtOAc (3 x 50 mL). The combined organic layers were washed with sat. brine (3 x 50 mL), dried over Na2SO4, filtered and evaporated and the crude material purified by preparative TLC (EtOAc) to give the title compound (100 mg, 12%) as a white solid. MS (ESI): m/z [M+H]+ 397.1/399 (Cl isotope pattern). Intermediate 41 1-(6-Chloropyridin-3-yl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine-2,4-dione
1-(6-Chloropyridin-3-yl)-3-(4-methoxybenzyl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine- 2,4-dione intermediate 40 (150 mg, 0.38 mmol) was treated with TFA (10 mL) at 20 °C and the mixture was stirred at 60 °C for 15 h. The reaction mixture was poured into sat. NaHCO3 (100 mL) and extracted with EtOAc (3 x 50 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated and to give the crude title compound (100 mg, 96%) as a tan solid which was used in the next step without further purification. MS (ESI): m/z [M+H]+ 277/279 (Cl isotope pattern). Intermediate 42 tert-Butyl ((1S,3S)-3-(2-hydroxyguanidino)cyclopentyl)carbamate
Cyanogen bromide (CAS Reg. No.506-68-3) (1.98 g, 18.7 mmol) was added to tert-butyl ((1S,3S)-3-aminocyclopentyl)carbamate (CAS Reg. No.645400-44-8) (2.5 g, 12.5 mmol) and
sodium acetate (3.07 g, 37.4 mmol) in THF (20 mL) at 20 °C. The resulting solution was stirred at 20 °C for 15 h. The reaction mixture was filtered over Celite and the filtrate concentrated under reduced pressure. The residue was diluted with EtOH (20 mL). Hydroxylamine (50%, aq) (6.60 g, 99.9 mmol) was added slowly at 20 °C. The resulting solution was stirred at 20 °C for 2 h. The solvent was removed under reduced pressure to give crude title compound (3.2 g, 99%) as a yellow gum that was used directly without further purification. MS (ESI) m/z [M+H]+ 259.0. Intermediate 43 tert-Butyl ((1S,3S)-3-((5-methyl-1,2,4-oxadiazol-3-yl)amino)cyclopentyl)carbamate
Acetic anhydride (1.1 mL, 12 mmol) was added to tert-butyl ((1S,3S)-3-(2- hydroxyguanidino)cyclopentyl)carbamate intermediate 42 (2.5 g, 9.7 mmol) and TEA (4.1 mL, 29 mmol) in MeCN (40 mL) at 20 °C. The resulting solution was stirred at 60 °C for 15 h. The solvent was removed under reduced pressure to give a pale-yellow gum. The crude product was purified by flash chromatography on silica (gradient: 2-25 % EtOAc in PE) to give the title compound (1.9 g, 69%) as a white solid. MS (ESI) m/z [M+H]+ 282.9. Intermediate 44 (1S,3S)-N1-(5-Methyl-1,2,4-oxadiazol-3-yl)cyclopentane-1,3-diamine
pTSA (1.59 g, 9.21 mmol) was added to tert-butyl ((1S,3S)-3-((5-methyl-1,2,4-oxadiazol-3- yl)amino)cyclopentyl)carbamate intermediate 43 (1.3 g, 4.6 mmol) in MeCN (20 mL) at 15 °C. The resulting mixture was stirred at 60 °C for 15 h. The solvent was removed under reduced pressure to give an unspecified TsOH salt of the crude title compound (2.2 g) as a brown solid that was used directly without further purification. MS (ESI) m/z [M+H]+ 182.9. Intermediate 45 Ethyl 3-((6-chloropyridin-3-yl)amino)-2-nitrobenzoate
Pd2(dba)3 (218 mg, 0.24 mmol) was added to a mixture of 2-chloro-5-iodopyridine (CAS Reg. No.69045-79-0) (1.37 g, 5.71 mmol), ethyl 3-amino-2-nitrobenzoate (CAS Reg. No.193014-01- 6) (1.00 g, 4.76 mmol), XantPhos (CAS Reg. No.161265-03-8) (275 mg, 0.48 mmol) and Cs2CO3 (2.33 g, 7.14 mmol) in 1,4-dioxane (50 mL) at 15 °C under nitrogen and it was stirred at 80 °C for 15 h. The reaction mixture was poured into sat. brine (200 mL) and extracted with EtOAc (4 x 125 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The residue was purified by preparative TLC (EtOAc : PE = 1:3) to give the title compound (680 mg, 44%) as a yellow solid. MS (ESI): m/z [M+H]+ 322/324 (Cl isotope pattern). Intermediate 46 Ethyl 2-amino-3-((6-chloropyridin-3-yl)amino)benzoate
Tetrahydroxydiboron (CAS Reg. No.13675-18-8) (747 mg, 8.33 mmol) was added to a mixture of 4,4’-dipyridyl (CAS Reg. No.553-26-4) (3 mg, 0.02 mmol) and ethyl 3-((6-chloropyridin-3- yl)amino)-2-nitrobenzoate intermediate 45 (670 mg, 2.08 mmol) in DMF (30 mL) at 0 °C and it was subsequently stirred at 20 °C for 2 h. The reaction mixture was poured into sat. brine (200 mL) and extracted with EtOAc (4 x 150 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The residue was purified by preparative TLC (EtOAc) to give the title compound (590 mg, 97%) as a yellow solid. MS (ESI): m/z [M+H]+ 292/294 (Cl isotope pattern). Intermediate 47 Ethyl 1-(6-chloropyridin-3-yl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxylate
Et3N (1.4 mL, 9.9 mmol) was added to a mixture of ethyl 2-amino-3-((6-chloropyridin-3- yl)amino)benzoate intermediate 46 (580 mg, 1.99 mmol), DMAP (12 mg, 0.10 mmol) and CDI (CAS Reg. No.530-62-1) (645 mg, 3.98 mmol) in THF (20 mL) at 0 °C and it was subsequently stirred at 60 °C for 6 h. The reaction mixture was triturated with EtOAc (3 x 50 mL) and the formed solid collected by filtration. The material was dried under vacuum to give the title compound (390 mg, 62%) as a white solid which was directly used in the next step without further purification. MS (ESI): m/z [M+H]+ 318/320 (Cl isotope pattern). Intermediate 48 Ethyl 1-(6-(((1S,3S)-3-((5-(difluoromethoxy)pyrimidin-2-yl)amino)cyclo- pentyl)amino)pyridin-3-yl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxylate
Pd-PEPPSI-lpentCl 2-methylpyridine (27 mg, 0.03 mmol) was added to a mixture of (1S,3S)-N1- (5-(difluoromethoxy)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 31 as 3HCl salt (267 mg, 0.76 mmol), ethyl 1-(6-chloropyridin-3-yl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4- carboxylate intermediate 47 (200 mg, 0.63 mmol) and Cs2CO3 (1.23 g, 3.78 mmol) in DMF (20 mL) at 15 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 15 h. The reaction mixture was filtered through a pad of Celite and the filtrate concentrated under reduced pressure. The crude material was purified by preparative TLC (7 M NH3 in MeOH:DCM,1:10) to give the title compound (245 mg, 74%) as a yellow solid. MS (ESI): m/z [M+H]+ 526.3. Examples
1-(6-(((1S,3S)-3-(Oxazolo[5,4-b]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)-1,3- dihydro-2H-benzo[d]imidazol-2-one – compound 1
Pd-PEPPSI-IpentCl 2-methylpyridine (136 mg, 0.16 mmol) was added to 1-(6-(((1S,3S)-3- aminocyclopentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one intermediate 3 (150 mg, 0.49 mmol), 2-chlorooxazolo[5,4-b]pyridine (CAS Reg. No. 159870-95-8) (50 mg, 0.32 mmol) and Na2CO3 (103 mg, 0.97 mmol) in DMF (10 mL) at 25 °C. The resulting mixture was stirred at 100 °C for 15 h under a nitrogen atmosphere. The reaction mixture was concentrated, diluted with EtOAc (150 mL) and washed sequentially with brine (3 x 50 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The crude product was purified by preparative HPLC (PrepMethod A, gradient: 24-40%) to give the title compound (97 mg, 70%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C23H22N7O2: 428.1830, found: 428.1842.1H NMR (500 MHz, DMSO-d6) δ 1.5–1.61 (1H, m), 1.61–1.72 (1H, m), 1.93–2.01 (1H, m), 2.01–2.07 (1H, m), 2.12–2.29 (2H, m), 4.25–4.34 (1H, m), 4.34–4.46 (1H, m), 6.62 (1H, d), 6.84 (1H, d), 6.89–7.11 (4H, m), 7.17 (1H, dd), 7.47 (1H, dd), 7.59 (1H, dd), 7.84 (1H, dd), 8.06 (1H, d), 8.42 (1H, d), 11.05 (1H, s). 1-(6-(((1S,3S)-3-(Thiazolo[5,4-b]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)-1,3- dihydro-2H-benzo[d]imidazol-2-one – compound 2
Pd-PEPPSI-IpentCl 2-methylpyridine (108 mg, 0.13 mmol) was added to free base 1-(6- (((1S,3S)-3-aminocyclopentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one intermediate 3 (119 mg, 0.38 mmol), 2-bromothiazolo[5,4-b]pyridine (CAS Reg. No.412923- 41-1 (55 mg, 0.26 mmol) and Na2CO3 (81 mg, 0.77 mmol) in DMF (10 mL) at rt and the resulting mixture was stirred at 100 °C for 15 h under nitrogen. The reaction mixture was concentrated, diluted with EtOAc (150 mL), and washed sequentially with brine (3 x 50 mL). The organic layer was dried (Na2SO4), filtered and evaporated to afford crude product. The crude product was first purified by preparative TLC (MeOH: DCM = 1: 15) followed by preparative HPLC (PrepMethod B, gradient 25-40%) to afford (47 mg, 41%) of the title compound as a white solid. HRMS (ESI)
m/z [M+H]+ calcd for C23H22N7OS: 444.1600, found: 444.1580.1H NMR (500 MHz, DMSO-d6) δ ppm 1.52 – 1.69 (2H, m), 1.91 – 2.09 (2H, m), 2.2 – 2.3 (2H, m), 4.3 – 4.45 (2H, m), 6.62 (1H, d), 6.83 (1H, d), 6.95 – 7.06 (4H, m), 7.25 (1H, dd), 7.47 (1H, dd), 7.67 (1H, dd), 7.97 – 8.16 (2H, m), 8.48 (1H, d), 10.99 (1H, s). 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one – compound 3
Pd-PEPPSI-IpentCl 2-methylpyridine (10.88 mg, 0.01 mmol) was added to 1-(6-(((1S,3S)-3- aminocyclopentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one intermediate 3 (80 mg, 0.26 mmol), 2-chloro-5-(difluoromethoxy)pyrimidine (51.4 mg, 0.28 mmol) and Na2CO3 (82 mg, 0.78 mmol) in DMF (20 mL) at 25 °C. The mixture was stirred at 100 °C for 15 h under a N2 (g) atmosphere. The reaction mixture was poured into brine (100 mL) and extracted with EtOAc (3 x 100 mL). The organic layers were combined and washed with brine (3 x 100 mL), dried over Na2SO4, filtered and evaporated. The residue was purified by preparative TLC (MeOH:DCM, 1:20) and then by preparative HPLC (PrepMethod A, gradient: 31-47%) to give the title compound (50 mg, 43%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C22H22F2N7O2: 454.1798, found: 454.1822.1H NMR (300 MHz, DMSO-d6) δ 1.4–1.69 (2H, m), 1.84–2.02 (2H, m), 2.08–2.24 (2H, m), 2.29 (3H, s), 2.39 (3H, s), 4.17–4.49 (2H, m), 5.71 (1H, s), 6.50 (1H, d), 6.80 (1H, d), 7.16 (1H, dd), 7.42–7.65 (1H, m), 7.71 (1H, d), 8.17 (1H, s). Example 5 1-(6-(((1S,3S)-3-((6-Methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)amino)pyridin-3-yl)-1,3- dihydro-2H-benzo[d]imidazol-2-one – compound 5
(1S,3S)-N1-(5-Iodopyridin-2-yl)-N3-(6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 22 (57 mg, 0.14 mmol), 1,3-dihydro-2H-benzo[d]imidazol-2-one (23.2 mg, 0.17 mmol), CuI (27 mg, 0.14 mmol), K2CO3 (60 mg, 0.43 mmol), 1,4-dioxane (1 mL) and DMCDA (0.023 mL, 0.14 mmol) was mixed in a vial. The vial was capped, evacuated and filled
with N2 (g) (x 2). The mixture was stirred at 100 °C for 20 h under a N2 (g) atmosphere. The reaction was cooled to rt and MeOH was added. The mixture was filtered through Celite. The plug was washed with MeOH, and the filtrate was concentrated under reduced pressure. The crude was purified by preparative HPLC (PrepMethod C, gradient: 20-60%) to give the title compound (15 mg, 26%) as a beige solid. HRMS (ESI) m/z [M+H]+ calcd for C21H23N8O: 403.1990, found: 403.1998.1H NMR (500 MHz, MeOH-d4) δ 1.57–1.75 (2H, m), 1.99–2.16 (2H, m), 2.23–2.38 (2H, m), 2.45 (3H, s), 4.34–4.42 (1H, m), 4.42–4.5 (1H, m), 6.69 (1H, d), 6.91 (1H, d), 7.03–7.15 (3H, m), 7.50 (1H, dd), 8.05 (1H, s), 8.20 (1H, s). Example 8 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-benzo[d]imidazol-2-one – compound 8
(1S,3S)-N1-([1,2,4]Triazolo[1,5-a]pyridin-2-yl)-N3-(5-iodopyridin-2-yl)cyclopentane-1,3-diamine intermediate 25 (66 mg, 0.16 mmol), 1,3-dihydro-2H-benzo[d]imidazol-2-one (26 mg, 0.19 mmol), CuI (30 mg, 0.16 mmol), K2CO3 (66 mg, 0.48 mmol), dioxane (1 mL) and DMCDA (0.025 mL, 0.16 mmol) was mixed in a vial. The vial was capped, evacuated, and filled with N2 (g) (x 2). The mixture was stirred at 100 °C for 20 h under a N2 (g) atmosphere. The reaction was cooled to rt and EtOAc was added. The mixture was filtered through Celite, the plug washed with EtOAc and MeOH and the combined filtrates were concentrated under reduced pressure. The crude material was purified by preparative HPLC (PrepMethod C, gradient: 20- 60%) and the solid obtained after lyophilization was re-dissolved in a mixture of EtOAc/MeOH (1:2). SiliaMetS dimercaptotriazine (for example Sigma catalog number 900680) (loading 0.59 mmol/g, 100 mg) was added and the mixture was concentrated. The residue was taken up with EtOAc/MeOH (1:2), the slurry filtered and the filtrate evaporated to give an oil. The oil was dissolved in ACN/water (1:1) and freeze dried overnight to give the title compound (23 mg, 34%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C23H23N8O: 427.1990, found: 427.1960.1H NMR (500 MHz, MeOH-d4) δ 1.58–1.78 (2H, m), 2–2.19 (2H, m), 2.24–2.38 (2H, m), 4.22–4.34 (1H, m), 4.34–4.44 (1H, m), 6.70 (1H, d), 6.88–6.97 (2H, m), 7.03–7.17 (3H, m), 7.37 (1H, d), 7.46–7.55 (2H, m), 8.05 (1H, s), 8.39–8.54 (1H, m). Example 10 3-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 10
Trifluoromethanesulfonic acid (6418 mg, 2.78 mmol) was added to 3-(6-(((1S,3S)-3-((5- (difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)-1-(4-methoxybenzyl)-1,3- dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 10 (200 mg, 0.35 mmol) in DCM (15 mL) at 25 °C and the resulting mixture was stirred at this temperature for 15 h. The mixture was concentrated under reduced pressure and the obtained crude product purified by preparative HPLC (PrepMethod D, gradient: 14-25%) to give the title compound (34 mg, 21%) as white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H21F2N8O2: 455.1750, found: 455.1716.1H NMR (300 MHz, DMSO-d6) δ ppm 1.52 – 1.64 (2H, m), 1.94 – 2.02 (2H, m), 2.11 – 2.30 (2H, m), 4.28 – 4.39 (2H, m), 6.94 (1H, brs), 7.04 (1H, t), 7.08 – 7.12 (1H, m), 7.40 (1H, dq), 7.53 (1H, d), 7.91 – 7.94 (2H, m), 8.13 – 8.25 (3H, m), 11.42 – 1.43 (1H, m).19F NMR (282 MHz, DMSO-d6) δ ppm -81.8.
1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 12
1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)-3-(4- methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 17 (120 mg, 0.21 mmol) was added to TFA (10 mL, 129.80 mmol) and trifluoromethanesulfonic acid (2 mL, 0.21 mmol) at 15 °C. The resulting mixture was stirred at 60 °C for 15 h. The solvent was removed under reduced pressure. The mixture was filtered and evaporated again to afford crude product. The crude was purified by preparative HPLC (PrepMethod E, gradient: 11-26%) to give the title compound (25.8 mg, 27%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H21F2N8O2: 455.1750, found: 455.1766.1H NMR (500 MHz, DMSO-d6) δ 1.55–1.73 (2H, m), 1.96–2.12 (2H, m), 2.12–2.21 (1H, m), 2.24–2.35 (1H, m), 4.21–4.31 (1H, m), 4.31–4.42 (1H, m), 6.89–7.23 (3H, m), 7.35 (1H, dd), 7.56 (1H, s), 8.02 (1H, dd), 8.03–8.09 (1H, m), 8.25 (1H, d), 8.28 (2H, s), 9.07 (1H, s), 11.95 (1H, s).19F NMR (471 MHz, DMSO-d6) δ ppm -81.9. Example 21
1-(4-Methoxybenzyl)-3-(6-(((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclo- pentyl)amino)pyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 21
Pd-PEPPSI-lpentCl 2-methylpyridine (19 mg, 0.02 mmol) was added to a mixture of (1S,3S)-N1- (6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 as 2TsOH salt (748 mg, 1.39 mmol), 3-(6-chloropyridin-3-yl)-1-(4-methoxybenzyl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin- 2-one intermediate 7 (170 mg, 0.46 mmol) and K2CO3 (320 mg, 2.32 mmol) in 1,4-dioxane (5 mL) at 18 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 18 h. The reaction mixture was filtered through Celite, the filter cake washed with DCM (2 x 5 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by preparative TLC (7 M NH3 in MeOH:DCM,1:25). A part of the obtained product was further purified by preparative HPLC (PrepMethod J, gradient: 34-41%) to give the title compound (31 mg) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C28H30N9O2: 524.2518, found: 524.2470.1H NMR (500 MHz, DMSO-d6) δ 1.49–1.62 (2H, m), 1.89–2.00 (2H, m), 2.13–2.20 (2H, m), 2.38 (3H, s), 3.72 (3H, s), 4.32–4.41 (2H, m), 5.05 (2H, s), 6.59 (1H, d), 6.89–6.94 (3H, m), 7.08 (1H, dd), 7.34–7.36 (2H, m), 7.51 (1H, dd), 7.53–7.59 (2H, m), 7.92 (1H, dd), 8.13 (1H, d), 8.17 (1H, s). Example 23 3-Methyl-1-(6-(((1S,3S)-3-((5-methyl-1,2,4-oxadiazol-3-yl)amino)cyclopentyl)amino)pyridin- 3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 23
Pd-PEPPSI-lpentCl 2-methylpyridine (45 mg, 0.05 mmol) was added to a mixture of (1S,3S)-N1- (5-methyl-1,2,4-oxadiazol-3-yl)cyclopentane-1,3-diamine intermediate 44 as 3TsOH salt (450 mg, 0.64 mmol), 1-(6-chloropyridin-3-yl)-3-methyl-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one intermediate 26 (140 mg, 0.54 mmol) and K2CO3 (223 mg, 1.61 mmol) in DMF (15 mL) at 20 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 15 h. The reaction mixture was diluted with sat. brine (150 mL) and the aqueous layer extracted with EtOAc (3 x 100 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The crude
material was purified by preparative TLC (DCM:MeOH, 10:1) followed by preparative HPLC (PrepMethod F, gradient: 7-16%) to give the title compound (12 mg, 5%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C20H23N8O2: 407.1938, found: 407.1904.1H NMR (500 MHz, DMSO-d6) δ 1.45–1.58 (2H, m), 1.81–1.86 (1H, m), 1.92–1.97 (1H, m), 2.06–2.16 (2H, m), 2.38 (3H, s), 3.40 (3H, s), 3.90 (1H, sext), 4.32 (1H, sext), 6.59 (1H, d), 6.82 (1H, d), 6.97 (1H, d), 7.05 (1H, dd), 7.24 (1H, d), 7.48 (1H, dd), 8.04 (1H, d), 8.08 (1H, d). Example 24 1-(6-(((1S,3S)-3-((5-(Trifluoromethyl)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 24
Pd-PEPPSI-lpentCl 2-methylpyridine (58 mg, 0.07 mmol) was added to a mixture of 1-(6- chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (170 mg, 0.69 mmol), (1S,3S)-N1-(5-(trifluoromethyl)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 28 as 2TFA salt (392 mg, 0.83 mmol) and Cs2CO3 (674 mg, 2.07 mmol) in 1,4- dioxane (20 mL) at 20 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 15 h. The reaction mixture was diluted with sat. brine (150 mL) and the aqueous layer extracted with EtOAc (3 x 125 mL). The combined organic layers were dried over Na2SO4, filtered and evaporated. The crude material was purified by preparative TLC (DCM:MeOH, 10:1) followed by preparative HPLC (PrepMethod G, gradient: 13-28%) to give the title compound (87 mg, 28%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H20F3N8O: 457.1706, found: 457.1676. 1H NMR (300 MHz, DMSO-d6) δ 1.46–1.65 (2H, m), 1.86–2.01 (2H, m), 2.11–2.20 (2H, m), 4.29–4.50 (2H, m), 6.60 (1H, d), 6.97–7.01 (2H, m), 7.17 (1H, dd), 7.48 (1H, dd), 7.95 (1H, dd), 8.07 (1H, d), 8.22 (1H, d), 8.59–8.63 (2H, m), 11.74 (1H, brs).19F NMR (282 MHz, DMSO-d6) δ ppm -59.24. Example 26 1-(6-(((1S,3S)-3-([1,2,4]Triazolo[1,5-a]pyridin-2-ylamino)cyclopentyl)amino)pyridin-3-yl)- 1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 26
Pd-PEPPSI-lpentCl 2-methylpyridine (26 mg, 0.03 mmol) was added to a mixture of 1-(6- chloropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one intermediate 13 (150 mg, 0.61 mmol), (1S,3S)-N1-([1,2,4]triazolo[1,5-a]pyridin-2-yl)cyclopentane-1,3-diamine intermediate 24 as 3HCl salt (238 mg, 0.73 mmol) and Cs2CO3 (1.19 g, 3.65 mmol) in DMF (15 mL) at 15 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 14 h. The reaction mixture was filtered through a syringe filter and the filtrate concentrated under reduced pressure. The crude material was purified by preparative TLC (7 M NH3 in MeOH:DCM,1:10) followed by preparative HPLC (PrepMethod H, gradient: 15-30%) to give the title compound (81 mg, 31%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C22H22N9O: 428.1942, found: 428.1942.1H NMR (500 MHz, DMSO-d6) δ 1.47–1.62 (2H, m), 1.87–1.92 (1H, m), 1.95–2.01 (1H, m), 2.12–2.20 (2H, m), 4.16–4.22 (1H, m), 4.30–4.37 (1H, m), 6.60 (1H, d), 6.64 (1H, d), 6.86 (1H, dt), 6.96 (1H, d), 6.99 (1H, dd), 7.17 (1H, d), 7.36–7.38 (1H, m), 7.40–7.43 (1H, m), 7.48 (1H, dd), 7.95 (1H, dd), 8.06–8.08 (1H, m), 8.58 (1H, d), 11.73 (1H, s). Example 27 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-N,N-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxamide – compound 27
Ethyl 1-(6-(((1S,3S)-3-((5-(difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3-yl)- 2-oxo-2,3-dihydro-1H-benzo[d]imidazole-4-carboxylate intermediate 48 (230 mg, 0.44 mmol) was added to solution of dimethylamine in MeOH (30%, 20 mL) at 20 °C and the mixture sealed in a microwave tube. The mixture was stirred at 100 °C for 2 h, cooled to rt and concentrated under reduced pressure. The crude material was purified by preparative HPLC (PrepMethod K, gradient: 53-63%) to give the title compound (15 mg, 6%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C25H27F2N8O3: 525.2168, found: 525.2192.1H NMR (300 MHz, DMSO-d6) δ 1.45–1.61 (2H, m), 1.83–1.98 (2H, m), 2.09–2.20 (2H, m), 2.90 (3H, brs), 3.00 (3H, brs), 4.27– 4.38 (2H, m), 6.60 (1H, d), 6.86 (1H, dd), 6.94–7.04 (3H, m), 7.03 (1H, t), 7.46 (1H, dd), 7.50
(1H, d), 8.05 (1H, d), 8.24 (2H, s), 11.25 (1H, brs).19F NMR (282 MHz, DMSO-d6) δ ppm - 81.77. Example 28 1-(5-Fluoro-6-(((1S,3S)-3-((6-methyl-1,2,4-triazin-3-yl)amino)cyclopentyl)amino)pyridin-3- yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one – compound 28
Pd-PEPPSI-lpentCl 2-methylpyridine (24 mg, 0.03 mmol) was added to a mixture of (1S,3S)-N1- (6-methyl-1,2,4-triazin-3-yl)cyclopentane-1,3-diamine intermediate 21 as 3TsOH salt (485 mg, 0.68 mmol), 1-(6-chloro-5-fluoropyridin-3-yl)-1,3-dihydro-2H-benzo[d]imidazol-2-one intermediate 29 (150 mg, 0.57 mmol) and Cs2CO3 (927 mg, 2.84 mmol) in 1,4-dioxane (15 mL) at 20 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 15 h. The reaction mixture was filtered through Celite, the filter cake washed with DCM (2 x 15 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by preparative TLC (7 M NH3 in MeOH:DCM,1:15) followed by preparative HPLC (PrepMethod I, gradient: 26-46%) to give the title compound (25 mg, 10%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H22FN8O: 421.1890, found: 421.1896.1H NMR (300 MHz, DMSO-d6) δ 1.52–1.69 (2H, m), 1.91–2.06 (2H, m), 2.11–2.22 (2H, m), 2.38 (3H, s), 4.34–4.45 (1H, m), 4.49–4.61 (1H, m), 6.88–7.05 (5H, m), 7.56–7.60 (2H, m), 7.97 (1H, d), 8.17 (1H, s), 11.08 (1H, brs).19F NMR (282 MHz, DMSO-d6) δ ppm -137.45.
3-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)-5- fluoropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one – compound 30
Pd-PEPPSI-lpentCl 2-methylpyridine (48 mg, 0.06 mmol) was added to a mixture of (1S,3S)-N1- (5-(difluoromethoxy)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 31 as 3HCl salt (200 mg, 0.57 mmol), 3-(6-chloro-5-fluoropyridin-3-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2- one intermediate 34 (150 mg, 0.57 mmol) and Cs2CO3 (923 mg, 2.83 mmol) in DMF (8 mL) at 25 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 18 h. The reaction mixture
was filtered through Celite, the filter cake washed with MeOH (3 x 5 mL) and the combined filtrates concentrated under reduced pressure. The crude material was purified by preparative TLC (EtOAc) followed by preparative HPLC (PrepMethod J, gradient: 20-38%) to give the title compound (55 mg, 21%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H20F3N8O2: 473.1656, found: 473.1672.1H NMR (300 MHz, DMSO-d6) δ 1.48–1.67 (2H, m), 1.90–2.00 (2H, m), 2.07–2.21 (2H, m), 4.33 (1H, sext), 4.52 (1H, sext), 6.88 (1H, d), 7.03 (1H, t), 7.07 (1H, dd), 7.37 (1H, dd), 7.49 (1H, d), 7.63 (1H, dd), 7.91 (1H, dd), 8.05 (1H, d), 8.23 (2H, s), 11.35 (1H, s).19F NMR (282 MHz, DMSO-d6) δ ppm -81.74, -138.25. Example 32 1-(6-(((1S,3S)-3-((5-(Difluoromethoxy)pyrimidin-2-yl)amino)cyclopentyl)amino)pyridin-3- yl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine-2,4-dione – compound 32
Pd-PEPPSI-lpentCl 2-methylpyridine (91 mg, 0.11 mmol) was added to a mixture of (1S,3S)-N1- (5-(difluoromethoxy)pyrimidin-2-yl)cyclopentane-1,3-diamine intermediate 31 as 3HCl salt (256 mg, 0.72 mmol), 1-(6-chloropyridin-3-yl)-5-methyl-3,5-dihydro-1H-imidazo[4,5-c]pyridine- 2,4-dione intermediate 41 (100 mg, 0.36 mmol) and Cs2CO3 (589 mg, 1.81 mmol) in DMF (10 mL) at 20 °C under a N2 atmosphere. The mixture was stirred at 100 °C for 20 h. The reaction mixture was concentrated under reduced pressure and the crude material purified by preparative TLC (DCM:MeOH, 10:1) followed by preparative HPLC (PrepMethod J, gradient: 20-40%) to give the title compound (1.5 mg, 1%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C22H23F2N8O3: 485.1850, found: 485.1878.1H NMR (300 MHz, DMSO-d6) δ 1.47–1.60 (2H, m), 1.82–1.96 (2H, m), 2.07–2.18 (2H, m), 3.50 (3H, s), 4.26–4.37 (2H, m), 6.08 (1H, d), 6.58 (1H, d), 6.97 (1H, d), 7.03 (1H, t), 7.39–7.50 (3H, m), 7.99 (1H, d), 8.23 (2H, s), 11.35 (1H, s). 19F NMR (282 MHz, DMSO-d6) δ ppm -81.78. Assays and methods used Assay 1 - Biochemical human PCSK9 assay This assay measures binding of compounds to PCSK9 by homogenous time-resolved fluorescence resonance energy transfer (TR-FRET).
To determine the IC50 of inhibitors of the interaction between the human PCSK9 and Alexa647 labelled small molecule, fluorescent probe displacement was monitored by homogenous TR- FRET technology. Upon binding of a terbium (Tb) cryptate conjugated anti-His mouse antibody (mAb Anti-6His Tb cryptate Gold, Cisbio) to PCSK9-TEV-His6, the displacement of the probe from PCSK9 was assessed by reduction of the proximity and FRET signal between the Tb cryptate that serves as a FRET-donor and the Alexa647 probe that serves as acceptor. Recombinantly expressed and purified PCSK9-TEV-His6 (1 nM) was mixed with a fluorescent probe (5 nM) and anti His-Tb-cryptate antibody (0.2 nM) in assay buffer (10 mM HEPES/NaOH, pH 7.4, 150 mM NaCl, 0.005 (v/v) % Tween 20).6 µL were subsequently added to an assay- ready plate containing 0.06 µL of controls and test compound 10 dose-response serial dilutions starting at a concentration of 10 mM (with 100 µM top and 3.2 nM lowest final concentration) by using Certus flex dispenser. The plate was sealed, and the reaction was incubated overnight (18-24h) at RT in the dark. FRET signal quantification was achieved by PHERAstar FSX (BMG) plate reader. The created data file contained the emission of FRET acceptor channel (665 nm, probe), FRET donor channel (620 nm, Tb-cryptate, excitation at 337 nm) and the FRET ratio (665 nm/620 nm signal x 10.000) which was used for calculation of a test compound´s IC50. Assays 2 and 2a - Biophysical human PCSK9 assays These assays measure binding of compounds to PCSK9 by SPR (“surface plasmon resonance”, a biophysical method) at plasma and a representative endosomal pH (7.4 and 5.6 respectively). The pH 7.4 (Assay 2) SPR binding experiments were performed on a Biacore S200 optical biosensor unit at 30 °C. A Series S Sensor Chip SA that is designed to bind biotinylated molecules for interaction analysis in Biacore systems was equilibrated at room temperature prior to use. The running buffer for protein tethering and subsequent ligand binding experiments was 10mM HEPES pH 7.4, 150mM NaCl, 0.05% (v/v) Tween 20 pH 7.4. For the surface tethering of PCSK9, biotinylated human PCSK9 (31-692)-Avi-His6 (Charles River Laboratories) at a concentration of 0.5mg/mL was used. Prior to the surface tethering, the surface was exposed to a solution of 50mM NaOH, 500mM NaCl via 3 consecutive injections of this solution with a contact time of 60 s and a flowrate of 10 µL min-1 to remove non-conjugated streptavidin. The PCSK9 protein was diluted to a concentration of 20 µg/mL using running buffer and injected with a contact time of 180-300 s and a flowrate of 10 µL min-1 over a single flow channel (typically flow channel 2 or flow channel 4) with the aim to achieve protein capture
levels of > 5000 response units (RU). Remaining biotin binding sites were blocked via 2 consecutive injections of a 10 µM D-biotin solution in running buffer with a contact time of 60 s and a flowrate of 10 µL min-1 over all flow-channels. Flow-channels 1 and 3 typically served as a reference surface throughout the subsequent binding experiments. The binding experiments were all performed at a flow rate of 30 µL min-1 and by employing the method of single-cycle kinetics. This approach involves the sequential injection of a compound concentration series without regeneration steps. A contact time between 90-150 s was selected, which was followed by a 40 min dissociation phase to allow for a proper estimation of the dissociation rate constant. Test compounds were delivered in DMSO at a concentration of 10 mM and a digital dispenser HP D300 was used to set up the compound concentration series using 6 concentrations. The tested concentrations have been 30, 100, 300, 1000, 3000 and 10000 nM. Prior to injecting any compound, the surfaces were equilibrated by injecting running buffer over them in three separate pulses. The data collection rate was set to 10 Hz. The raw sensorgrams of the compound injections were first subjected to reference subtraction (subtracting the signal from flow channel 1 and/or 3 from the signal from channels 2 and/or 4 respectively) and then blank subtraction (subtracting the signal from injecting DMSO controls from the reference subtracted data). The resulting double-referenced sensorgrams were then fitted using a 1:1 binding interaction model using the manufactures software package to extract kinetic- and affinity data. Active compounds have been defined by creating a detectable binding signal at the highest compound concentration (10mM) of ≥ 3 RUs. Kinetic- and affinity data on active compounds are only provided for those compounds where the binding signal at the highest compound concentration (10mM) is ≥ 50% of the theoretical maximum binding signal for a 1:1 binding interaction (Rmax, typically between 15-20 RUs) in order to enable a proper fitting of the data. The pH 5.6 (Assay 2a) SPR experiments were performed on a Biacore 8K optical biosensor unit (Cytiva) at 37 °C. A Series S Sensor Chip SA (Cytiva – Lot#10315802) that is designed to bind biotinylated molecules for interaction analysis in Biacore systems was equilibrated at room temperature prior to use. Buffer A for protein tethering was 10 mM Hepes, 150 mM NaCl, 0.05% (v/v) Tween 20 pH 7.4. (Cytiva, Product#BR100671). Buffer B used for the subsequent ligand binding experiments was 20 mM Cacodylate, 150 mM NaCl, 0.05% (v/v) Tween 20, pH 5.60. Prior to the surface tethering of biotinylated PCSK9, the surface was exposed to a solution of 50 mM NaOH (Merck, Product#1.06469.1000), 500 mM NaCl (Sigma-Aldrich, 71380-M) via 3 consecutive injections of this solution with a contact time of 60 s and a flowrate of 10 µL.min-1 to remove non-conjugated streptavidin. The biotinylated human PCSK9 (31-692)-Avi-His6 (Charles River Laboratories) at a concentration of 0.5 mg/mL was diluted to a concentration of 20 µg/mL using Buffer A and injected over flow cell 2 with a contact time of 600 s and a flowrate of 5 µL.min-
1 with the aim to achieve protein capture levels of 6000-7000 RU. Remaining biotin binding sites were blocked with a single injections of a 10 µM D-biotin solution (Avidity, Product#BIO200) in running buffer with a contact time of 60 s and a flowrate of 10 µL.min-1 over all flow cells. Flow cells 1 served as a reference surface during the subsequent ligand binding experiments. The protein surface was stabilised over night using standby flow, and Buffer A was exchanged with Buffer B by priming the system the next day prior to the ligand binding experiments The binding experiments were all performed at a flow rate of 30 µL.min-1 and by employing the method of single-cycle kinetics. This approach involves the sequential injection of a compound concentration series without regeneration steps. A contact time of 120 s was used, which was followed by a 40 min dissociation phase to allow for a proper estimation of the dissociation rate constant. Compounds have been tested in a concentration series using 6 concentrations. The tested concentrations have been 30, 100, 300, 1000, 3000 and 10000 nM. The raw sensorgrams of the compound injections were first subjected to reference subtraction (subtracting the signal from flow-channel 1 from signal from channel 2) and then blank subtraction (subtracting the signal from injecting 2 DMSO controls from the reference subtracted data). The resulting double-referenced sensorgrams were then fitted using a 1:1 binding interaction model using the manufactures software package (BIAcore Insight Evaluation software V 5.0.18.22102) to extract kinetic- and affinity data. The comparator compound used in Assays 2 and 2a is example 493 in WO 2020/150473 A2.
. Table 3: SPR Data Assay 2 Assay 2 Assay 2 (PCSK9 Assay 2a (PCSK9 (PCSK9 Assay 2a Assay 2a BIAcore pH 5.6 BIAcore BIAcore DBA pH 5.6 SPR pH 5.6 SPR DBA SPR Example No. DBA CR) CR) ka kd CR) KD Mean GMean mean mean Mean mean kd KD (M-1.s-1) (1/s) ka (M) - (1/s) (M) (M1.s-1) Comparative 493 47868 1.74E-4 3.87E-9 2.86E-07 2.63E5 7.56E-02 3 58325 3.78E-5 6.33E-10 1.61E-07 2.37E5 3.82E-02 7 1.93E-07 3.83E5 7.44E-02 8 8.63E-08 3.04E5 3.23E-02 10 1.63E-07 3.16E5 2.65E-02 12 89984 2.44E-5 2.72E-10 6.67E-08 2.44E5 1.63E-02 16 5.80E-08 1.74E5 1.01E-02
Assays 3 and 3a - PCSK9 LDL-C uptake assays Profiling compounds for PCSK9 antagonist activity is based on their capacity to restore LDL- uptake in HepG2 cells. The assay is based on exogenous PCSK9 protein (WT, assay 3 or D374Y mutant, assay 3a) and LDL complexed with a pH-sensitive dye (pHrodo™ Red-LDL). Outside the cells, at neutral pH, the pHrodo™ Red-LDL is dimly fluorescent but upon LDLR mediated endocytosis it fluoresces brightly. PCSK9 trafficks the LDL receptor (LDLR) to intrecellular degradation and reduces uptake of LDL. Inhibition of PCSK9 reduces LDLR degradation and the increased LDL uptake is quantified by fluorescence microscopy. Preparation of assay reagents Assay medium: OptiMem (Gibco #51985) + Penicilin/Streptomycin (Gibco #15140122, 1:100 dilution) Labelled LDL: Low Density Lipoprotein From Human Plasma, pHrodo™ Red (pHrodo™ Red- LDL) (Invitrogen #L34356) Cells: HepG2 (ATCC #HB-8065) WT PCSK9 protein: In-house. Sequence: MGTVSSRRSW WPLPLLLLLL LLLGPAGARA QEDEDGDYEE LVLALRSEED GLAEAPEHGT TATFHRCAKD PWRLPGTYVV VLKEETHLSQ SERTARRLQA QAARRGYLTK ILHVFHGLLP GFLVKMSGDL LELALKLPHV DYIEEDSSVF AQSIPWNLER ITPPRYRADE YQPPDGGSLV EVYLLDTSIQ SDHREIEGRV MVTDFENVPE EDGTRFHRQA SKCDSHGTHL AGVVSGRDAG VAKGASMRSL RVLNCQGKGT VSGTLIGLEF IRKSQLVQPV GPLVVLLPLA GGYSRVLNAA CQRLARAGVV LVTAAGNFRD DACLYSPASA PEVITVGATN AQDQPVTLGT LGTNFGRCVD LFAPGEDIIG ASSDCSTCFV SQSGTSQAAA HVAGIAAMML SAEPELTLAE LRQRLIHFSA KDVINEAWFP EDQRVLTPNL VAALPPSTHG AGWQLFCRTV WSAHSGPTRM ATAIARCAPD EELLSCSSFS RSGKRRGERM EAQGGKLVCR AHNAFGGEGV YAIARCCLLP QANCSVHTAP PAEASMGTRV HCHQQGHVLT GCSSHWEVED LGTHKPPVLR PRGQPNQCVG HREASIHASC CHAPGLECKV KEHGIPAPQE QVTVACEEGW TLTGCSALPG TSHVLGAYAV DNTCVVRSRD VSTTGSTSEE AVTAVAICCR SRHLAQASQE LQENLYFQGH HHHHH (SEQ ID NO.: 1) PCSK9 protein (D374Y mutant): Human PCSK9 (D374Y) Protein, His Tag, MALS verified (Acro Biosystems PCY-H5225). Assay 3 Neutral Control: DMSO (100%) Assay 3 Inhibitor Control: 6'-(((1S,3S)-3-((3H-Imidazo[4,5-b]pyridin-2- yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one (10 µM)
Synthesis of Assay 3 Inhibitor Control 6'-(((1S,3S)-3-((3H-Imidazo[4,5-b]pyridin-2-yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2- one
A mixture of 6'-(((1S,3S)-3-((3-(4-methoxybenzyl)-3H-imidazo[4,5-b]pyridin-2- yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one and 6'-(((1S,3S)-3-((1-(4-methoxybenzyl)- 1H-imidazo[4,5-b]pyridin-2-yl)amino)cyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one Intermediate X3 (100 mg, 0.20 mmol) was treated with TFA (3 mL) at 20°C and the resulting solution was stirred at 80°C for 18 h under a nitrogen atmosphere. The reaction mixture was cooled to rt, filtered through Celite and the filter cake was washed with DCM (2×5 mL). The combined filtrates were concentrated under reduced pressure and the obtained residue was purified by reversed phase flash chromatography on a C18 column (gradient 0–29% MeCN in water (1% TFA)) followed by preparative HPLC, MC-Actus Triart C18, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3 + 0.1% aqueous NH3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 10% B to 40% B, to give the title compound (10 mg, 13%) as a white solid. HRMS (ESI) m/z [M+H]+ calcd for C21H22N7O: 388.1880, found: 388.1896.1H NMR (300 MHz, Methanol-d4) 1.55 – 1.74 (2 H, m), 2.04 – 2.13 (2 H, m), 2.22 – 2.42 (2 H, m), 4.38 (2 H, h), 6.46 (1 H, td), 6.57 – 6.67 (2 H, m), 6.96 (1 H, dd), 7.39 – 7.54 (2 H, m), 7.54 – 7.68 (2 H, m), 7.82 – 8.00 (2 H, m). Intermediate X3 6'-(((1S,3S)-3-((3-(4-Methoxybenzyl)-3H-imidazo[4,5-b]pyridin-2-yl)amino)cyclopentyl)amino)- 2H-[1,3'-bipyridin]-2-one and 6'-(((1S,3S)-3-((1-(4-Methoxybenzyl)-1H-imidazo[4,5-b]pyridin-2-yl)amino)cyclopentyl)amino)- 2H-[1,3'-bipyridin]-2-one
1-(Chloromethyl)-4-methoxybenzene (117 mg, 0.75 mmol) was added to 2-chloro-1H- imidazo[4,5-b]pyridine (125 mg, 0.81 mmol) and MTBD (300 mg, 1.96 mmol) in DMA (4 mL) at 20°C and the resulting solution was stirred at 20°C for 18 h under a nitrogen atmosphere. Pd-
PEPPSI-IpentCl 2-methylpyridine (27.4 mg, 0.03 mmol) and 6'-(((1S,3S)-3- aminocyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one × HCl Intermediate X2 (100 mg, 0.33 mmol) were added and the resulting suspension was stirred at 100°C for 16 h. The crude reaction mixture was directly purified by reversed phase flash chromatography on a C18 column (gradient: 5–30% of MeCN in water) to give a mixture of the regioisomeric title compounds (120 mg, 73%) as a yellow gum; MS (ESI) m/z [M+H]+ 508.35. Intermediate X2 6'-(((1S,3S)-3-Aminocyclopentyl)amino)-2H-[1,3'-bipyridin]-2-one
2 M HCl in Et2O (27 mL, 54 mmol) was added slowly to tert-butyl ((1S,3S)-3-((2-oxo-2H-[1,3'- bipyridin]-6'-yl)amino)cyclopentyl)carbamate Intermediate X1 (1 g, 2.70 mmol) in DCM (10 mL) at 25 °C. The resulting mixture was stirred at 25°C for 3 h. This synthesis procedure was repeated for a second batch of tert-butyl ((1S,3S)-3-((2-oxo-2H-[1,3'-bipyridin]-6'- yl)amino)cyclopentyl)carbamate Intermediate X1 (1.7 g, 4.6 mmol). The two batches were combined and concentrated. The crude product was recrystallised from EtOAc:PE (5:1) to give a solid which was collected by filtration and dried in vacuo to give an unspecified HCl salt of the title compound (2.5 g, 100%) as a yellow solid; MS (ESI) m/z [M+H]+ 270.9. Intermediate X1 tert-Butyl ((1S,3S)-3-((2-oxo-2H-[1,3'-bipyridin]-6'-yl)amino)cyclopentyl)carbamate
rel-(1R,2R)-N1,N2-Dimethylcyclohexane-1,2-diamine (0.212 g, 1.49 mmol) and Cu(I)I (0.283 g, 1.49 mmol) were added to tert-butyl ((1S,3S)-3-((5-iodopyridin-2- yl)amino)cyclopentyl)carbamate intermediate 1 (3.0 g, 7.44 mmol), K2CO3 (3.08 g, 22.3 mmol) and pyridin-2(1H)-one (1.42 g, 14.9 mmol) in 1,4-dioxane (20 mL). The resulting solution was stirred at 110°C for 18 h under a nitrogen atmosphere. The reaction mixture was diluted with EtOAc (25 mL) and washed sequentially with water (3×25 mL). The organic layer was dried over Na2SO4, filtered and evaporated. The crude material was triturated with EtOAc:PE (5:1) to give a solid. The solid was collected by filtration and dried in vacuo to give the title compound (2.70 g, 98%) as a yellow solid; MS (ESI) m/z [M+H]+ 371.2.
Step by step protocol for running the assays: Day 1 1. Cryopreserved HepG2 cells were thawed in cell medium and centrifuged for 5 min at 250 g. Supernatant was discarded and the cell pellet resuspended in cell medium and counted with a Nucleocounter (ChemoMetec). Cells were again centrifuged for 5 min at 250 g and the pellet was resuspended to 500000 cells/mL in assay medium. 2. 20 µL of above cell mix was dispensed into black µclear PDL coated Greiner #781091 (Assay 3) or Greiner #781946 (Assays 3 and 3a) 384 well plates with Multidrop Combi (ThermoFisher) and left at room temperature for 20 minutes. 3. Plates were incubated at 37 °C, 5% CO2 for 24 h. Day 2 1. (Assay 3 only) Test compounds were prepared in concentration response in DMSO with a half-log dilution factor in DMSO in Echo 384 LDV plates (Labcyte LP-#0200) starting at 10 mM. 2. 30 nL of above test compounds were dispensed with Echo 655 (Labcyte) to cells for a top concentration of 10 µM (Assay 3) or single concentration of 0.1 µM (Assay 3a). 3. Assay 3: WT PCSK9 protein was diluted to 375 nM with assay medium and dispensed to cells with Multidrop Combi (ThermoFisher), 10 µL per well, for a final concentration of 125 nM. Assay 3a: PCSK9 protein (D374Y mutant) was diluted to 6 nM with assay medium and dispensed to cells with Multidrop Combi (ThermoFisher), 10 µL per well, for a final concentration of 2 nM. 4. Plates were incubated at 37 °C, 5% CO2 for 24 h. Day 3 1. 6 µg/mL pHrodo™ Red-LDL in assay medium was dispensed to cells with Multidrop Combi (ThermoFisher), 10 µL per well. 2. Plates were incubated at 37 °C, 5% CO2 and imaged with the Incucyte S3 (Sartorius) after 4 h (Assay 3) or 24 h (Assay 3a). Image data was processed using Incucyte 2022B Rev2 software (Sartorius) to identify cells and red fluorescence intensity. Assay 3: Genedata Screener (Genedata AG) was used to further process data by fitting data with the normalization setting “Neutral Controls Minus Inhibitors” using a four parameter logistic fit. For compounds exceeding the efficacy of the inhibitor control a manual curve fit adjusting the
sinf curve parameter had to be applied. For the reported %efficacy values, the mean of all values at the indicated concentration was used, regardless of curve fitting. Assay 3a: Genedata Screener (Genedata AG) was used to further process data by fitting data with the normalization setting “Neutral Controls Minus Inhibitors”. Wells with no addition of compounds and no addition of PCSK9 protein were used as Inhibitor Control, giving a high signal in the assay due to uninhibited uptake of LDL into the cells. Wells without addition of compounds but with addition of PCSK9 were used as Neutral Control, giving a low signal in the assay due to PCSK9-inhibited uptake of LDL into the cells. For the reported %efficacy values, the mean of all values at the indicated concentration was used. The number of replicates is n=7 for all compounds unless indicated otherwise. The comparator compound used in Assays 3 and 3a is example 493 in WO 2020/150473 A2.
. Assay 4 - hERG assay (human Ether-á-go-go-Related Gene) This assay (human Ether-á-go-go-Related Gene) measures activity of the compounds at the potassium ion channel hERG (human Ether-á-go-go-Related Gene). Experiments were performed on the SyncroPatch 384PE high throughput patch clamp platform at room temperature and medium resistance chips with 4 patch holes per site. Chinese hamster ovary K1 (CHO) cell lines over-expressing the ion channel of choice (hERG) were used in assay-ready format and kept in liquid nitrogen or were used from live culture. Cells were either thawed and diluted in HBSS or were detached from flasks and resuspended in HBSS. HBSS comprised 140 mM NaCl, 4 mM KCl, 10 mM HEPES and 5 mM Glucose (pH 7.4). The internal patch clamp solution was KF 120 mM, KCl 20 mM, HEPES 10 mM, EGTA 10 mM, and 25 µM Escin (pH 7.2). After the sealing process was complete, the external solution was exchanged for external patch clamp solution comprising NaCl 80 mM, KCl 4 mM, HEPES 10 mM, CaCl22 mM, MgCl21 mM, glucose 5 mM, and NMDG 60 mM (pH 7.4). All solutions were stored at room temperature, except Escin, which was stored at 4 °C. All test compounds were dispensed in greiner-bio 384 well plates and tested in a 6 point cumulative assay (final DMSO concentration 0.33%). Only wells that passed previously agreed acceptance criteria for this platform were used in this analysis (30 MegaOhm seal resistance, Z prime >0.4 and current size >0.2 nA).
High concentration hERG Experiments were performed on the QPatchII high throughput patch clamp platform at room temperature using single holes QChips. Chinese hamster ovary K1 (CHO) cell lines over- expressing the ion channel of choice (hERG) were used from live culture. All solutions were stored at 4 °C or -20 °C. All compounds were dispensed as 10 or 50mM DMSO stocks, in 96 well plates and diluted to a format that allowed testing in a 6 point cumulative assay (final DMSO concentration 2% or 0.4% DMSO). Only wells that passed previously agreed acceptance criteria for this platform were used in this analysis (500 MegaOhm seal resistance and current size >0.2 nA, with positive controls including Verapamil and DMSO being consistent). Assay 5 - GSK3β Assay (ThermoFisher assay) This assay measures the activity of the compounds at GSK3^ (Glycogen synthase kinase-3 beta). The test compounds were screened in 1% DMSO (final) in the well. For 10-point titrations, 3- fold serial dilutions are conducted from the starting concentration of 10 µM. Assay Protocol Bar-coded Corning, low volume NBS, black 384-well plate 1.2.5 µL – 4X Test Compound or 100 nL 100X plus 2.4 µL kinase buffer 2.5 µL – 2X Peptide/Kinase Mixture 3.2.5 µL – 4X ATP Solution 4.30-second plate shake 5.60-minute Kinase Reaction incubation at room temperature 6.5 µL – Development Reagent Solution 7.30-second plate shake 8.60-minute Development Reaction incubation at room temperature 9. Read on fluorescence plate reader and analyse the data In step 2, the 2X GSK3β (GSK3 beta) / Ser/Thr (Glycogen synthase kinase-3 beta/ Serine/ Threonine) 09 mixture is prepared in 50 mM HEPES (4-(2-hydroxyethyl)-1- piperazineethanesulfonic acid) pH 7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA (egtazic acid). The final 10 µL Kinase Reaction consists of 0.22 - 0.92 ng GSK3β (GSK3 beta) and 2 µM Ser/Thr 09 in 50 mM HEPES pH 7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA. In step 3 the ATP Solution is diluted to a 4X working concentration in Kinase Buffer (50 mM HEPES pH 7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA).
In Step 6 the Development Reagent is diluted 1:512 in Development Buffer (10X Novel PKC Lipid Mix: 2 mg/mL Phosphatidyl Serine, 0.2 mg/mL DAG in 20 mM HEPES, pH 7.4, 0.3% CHAPS). Graphing Software SelectScreen® Kinase Profiling Service uses XLfit from IDBS. The dose response curve is curve fit to model number 205 (sigmoidal dose-response model). If the bottom of the curve does not fit between -20% & 20% inhibition, it is set to 0% inhibition. If the top of the curve does not fit between 70% and 130% inhibition, it is set to 100% inhibition. Assay 6 – in vivo Mouse GalNAc ASO for in vivo Nucleobase Sequence: 5’-AACTACAAAACCCTGC-3’ where C = 5MeC (SEQ ID NO.: 2) HELM: [GalNAc THA]-[AH]- {P.[LR](A)[sP].[LR](A)[sP].[LR]([5meC])[sP].[dR](T)[sP].[dR](A)[sP].[dR]([5meC])[sP].[dR](A)[sP]. [dR](A)[sP].[dR](A)[sP].[dR](A)[sP].[dR]([5meC])[sP].[dR]([5meC])[sP].[dR]([5meC])[sP].[LR](T)[ sP].[LR](G)[sP].[LR]([5meC]) where LR = LNA (Locked Nucleic Acid), dR = deoxyribose, sP = thiophosphate, P = phosphate, A = adenosine, G = guanosine, C = 5-methylcytosine, T = thymine, GalNAc THA = GalNAc TrisHexylAmine, AH = AminoHexyl Molecular Formula: C232H326N70O109P16S15 Molecular Weight: 6816.0172 Da Structure is provided in Figure 1. Synthesis MMTr-protected oligonucleotide (MMTr-ON) with the above sequence was synthesised on an ÄKTA OligoPilot Plus 100 synthesizer (GE Healthcare), on a 940 µmol scale, using a standard synthesis cycle of detritylation (3% dichloroacetic acid in toluene), coupling (coupling agent: 0.25 M 5-[3,5-bis(trifluoromethyl)phenyl]-1H-tetrazole solution in acetonitrile), capping (Cap A: 20% N-methylimidazole and 80% acetonitrile; Cap B: 20% pyridine, 20% acetic anhydride and 60% acetonitrile), oxidation (0.05 M iodine in pyridine and water) or thiolation (0.2 M xanthane hydride in pyridine), and solid supports (UNY Primer Support 5G ~353 μmol/g, GE Healthcare). All fully protected β-cyanoethyl phosphoramidite monomers were dissolved in dry acetonitrile or 15% DMF in dry acetonitrile (0.2 M) under argon immediately prior to use. The phosphoramidite re-circulation time/coupling time for DNA monomers was 5 min and was extended to 10 min for
LNA monomers. Stepwise coupling efficiencies and overall yields were determined by automated trityl cation absorption monitoring exceeding 98% for all oligonucleotides synthesized. At the end of assembly, the solid-support bound MMTr-ON was treated with ammonia (aq.26%) solution (40 mL) at 55 °C for 18 h. The solution was filtered, and the MMTr-ON product was purified using HPLC (XBridge C18, 10 µm 50x250 mm column; 5-45% acetonitrile in aqueous NH4HCO3 (50 mM). Fractions containing the MMTr-ON product were combined, and volatiles were removed on a Speedvac. The residue was dissolved in water (4 mL) and the MMTr group was removed by treating the obtained solution with acetic acid 10% (1 mL) at 40 °C for 60 min. NaOAc (3 M aq, 0.6 mL) and EtOH (95%, 20 mL) were sequentially added. The mixture was stored at -20 °C for 120 min and centrifuged for 15 min at 4 °C. The resulting supernatant was decanted off and the formed pellet was re-suspended in EtOH (85%, 12 mL) and the procedure repeated. Finally, the pellet was dissolved in water (20 mL) and lyophilized to yield the desired HA-oligonucleotide. GalNac conjugation In a falcon tube HA-oligonucleotide (1074 mg) was dissolved in water (11.176 mL), TEA (0.38 mL) was added and the pH was immediately checked, then 765 mg of GalNAc ligand 1-OPfp ester (Kim 2024, dissolved in 2.79 mL of ACN) was added to the tube. The mixture was shaken for 4 h, at room temperature. LCMS showed the desired product mass. The reaction mixture was mixed with 5 mL of aq NH3 solution shaken overnight at room temperature and freeze-dried overnight. Crude after ammonia treatment and freeze dried white foamy material was purified by preparative-HPLC. Stationary phase: Waters Premier BEH C18, 1.7μm, 2.1x100mm, Mobile phase: Gradient 5-30% in 10 min, 0.6 mL/min, 45 °C, 260 nm, A: 50 mM NH4HCO3 in water (pH 8), B: ACN. Purity of purified fraction 96.8 Area %. The fractions were concentrated (ammonia buffer), and the oligo was precipitated with NaOAc in EtOH (10% NaOAc in 20 mL 80% EtOH) overnight. Then, the fractions were centrifuged and immediately submitted to desalt. The ASO was desalted using an ÄKTA system using WorkBeads Dsalt (50 mL) column at a flowrate of 10mL/min of water over 20 mins. Injected in 15 mL of 1 M aq NaCl and fractions were collected based on absorbance at 260 nm. The pure fraction was collected and freeze- dried overnight. A sample was taken to check absorbance with nanodrop. In vivo study protocol and results Heterozygous male human PCSK9 knock-in (hPCSK9-KI) mice (Carreras 2019) were fed a regular chow diet throughout and dosed via subcutaneous injections with murine Pcsk9 GalNAc-ASO (Mouse GalNAc ASO for in vivo above) at 5 mg/kg/week formulated in PBS for 4
weeks with one additional loading dose in week 1 to ablate endogenous hepatic murine Pcsk9 expression levels prior to compound dosing. Compounds were formulated in 0.5% HPMC 10000 cPs, 0.1% PS80 in Milli-Q® (Merck Millipore) purified water with or without 5% mannitol, and dosed by oral gavage at the doses indicated twice daily for 7 days. Blood samples of 50 µL were drawn one day before the first dose (baseline) and at termination after 7 days of dosing (4 hours post dose) for measurements of plasma LDL-C. Plasma concentrations of LDL-C were assessed using an enzymatic method (Crystal Chem, product# 79980 and 79983). LDL-C reduction (%) was calculated as follows = ((LDL-C concentration post dosing)–(baseline LDL-C)) / (baseline LDL-C) * 100% followed by subtraction of corresponding effect in the vehicle group. The comparator compound used in Assay 6 is example 493 in WO 2020/150473 A2.
. Table 4 – in vivo data Dose LDL-C reduction Example No. (mg/kg/day) (%) Comparative Example 493 30 -27.5% in WO 2020/150473 A2 12 100 -35
Table 5 – Activity results in Assays 1, 2, 4, 5, 3 and 3a for compounds 1-32 Assay 5 Ass Assay 3a Assay 1 Assay 2 Assay 4 ay 3 LDL-C (PCSK9 (PCSK9 (hERG Hu (GSK3^ Assay 3 LDL-C FRET-Z-Lyte LDL-C uptake uptake Example Hu Bind BIAcore CHO uptake assay assay o. TRF) DBA CR) IF E CR) N Ph CR- GMean IC50 assay Mean Mean effec n GMean D Syncr t GMea K o) IC (nM) (nM) GMea (µM) GMean effect @ 0.1 µM 50 n IC50 (µM) ATP Conc: IC50 (µM) (@ 3.16 compound 10.000 (µM) µM) (%) (%) 1 1.8 2.8 36.8 >10.0 0.331 -171 -20.3 2 0.7 1.3 22.3 >10.0 0.368 -161 -31.4 3 0.5 0.6 11.3 >10.0 0.451 -320 -37.2 4 0.4 0.6 7.9 7.8 0.188 -220 -36.0 5 1.1 1.7 >40.1 >0.958 -198 -30.8 6 0.7 0.213 -153 -33.6 7 0.9 >40.1 >10.0 0.357 -158 -28.4 8 0.6 22.9 0.359 -224 -32.4 9 1.4 0.224 -159 -36.6 10 0.6 23.6 0.358 -161 -36.6 11 0.8 >40.1 0.062 -183 -39.2 12 0.8 0.3 15.9 0.650 -206 -35.9 13 <0.4 9.2 1.662 -244 -35.2 14 0.4 >40.1 >10.0 0.078 -187 -45.2 15 0.4 >40.1 0.075 -176 -41.6 16 0.6 >40.1 >10.0 0.194 -204 -33.6 17 0.5 17.1 >10.0 0.162 -223 -38.1 18 0.9 -34.3 19 0.5 >40.1 >10.0 -41.4 20 0.6 0.167 -135 -33.1 21 0.5 0.110 -119 -39.2 22 1.0 0.114 -139 -32.2 23 1.0 >40.1 >10.0 0.126 -124 -31.9 24 0.6 10.1 4.2 1.775 -243 -28.7 25 0.4 0.236 -192 -44.0 26 0.6 >40.1 >10.0 0.172 -153 -31.1 27 3.4 >40.1 >3.760 -135 -24.3 28 0.5 0.7 >40.1 >10.0 0.668 -366 -37.3 29 <0.4 15.5 >10.0 0.195 -294 -34.4 30 0.3 0.2 27.0 >10.0 -37.8 31 <0.3 0.1 11.6 -34.8 32 1.1 >40.1 >10 -29.9 *** The features disclosed in the foregoing description, or in the following claims, or in the accompanying drawings, expressed in their specific forms or in terms of a means for performing the disclosed function, or a method or process for obtaining the disclosed results, as appropriate, may, separately, or in any combination of such features, be utilised for realising the disclosure in diverse forms thereof. While the disclosure has been described in conjunction with the exemplary embodiments described above, many equivalent modifications and variations will be apparent to those skilled
in the art when given this disclosure. Accordingly, the exemplary embodiments of the disclosure set forth above are considered to be illustrative and not limiting. Various changes to the described embodiments may be made without departing from the spirit and scope of the disclosure. For the avoidance of any doubt, any theoretical explanations provided herein are provided for the purposes of improving the understanding of a reader. The inventors do not wish to be bound by any of these theoretical explanations. Any section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described. Throughout this specification, including the claims which follow, unless the context requires otherwise, the word “comprise” and “include”, and variations such as “comprises”, “comprising”, and “including” will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps. It must be noted that, as used in the specification and the appended claims, the singular forms “a,” “an,” and “the” include plural referents unless the context clearly dictates otherwise. Ranges may be expressed herein as from “about” one particular value, and/or to “about” another particular value. When such a range is expressed, another embodiment includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by the use of the antecedent “about,” it will be understood that the particular value forms another embodiment. The term “about” in relation to a numerical value is optional and means for example +/- 10%.
References A number of publications are cited above in order to more fully describe and disclose the compound of Formula (I) and the state of the art to which it pertains. Full citations for these references are provided below. The entirety of each of these references is incorporated herein. Full Reference DOI Elbitar 2016 Elbitar et al., Expert Opin 10.1080/13543776.2016.1206080 Therapeutic Patents 201626:1377- 1392. Abifadel 2003 Abifadel, et al. Nat. Genet.2003 10.1038/ng1161 34:154-6. Abifadel 2010 Abifadel, et al. Expert Opin. Ther. 10.1517/13543776.2010.518615 Pat.201020:1547–71. Maxwell 2003 Maxwell, et al. J. Lipid Res.2003 10.1194/jlr.M300203-JLR200 44:2109–19. Persson 2009 Persson et al. Endocrinology 2009 10.1210/en.2008-1281 150:1140–6. Langhi 2008 Langhi et al. FEBS Lett.2008 10.1016/j.febslet.2008.02.038 582:949–55. Robinson Robinson et al., Artherosclerosis 10.1016/j.atherosclerosis.2015.10.023 2015 2015243:593-597. Carreras Carreras, A., et al. (2019). In vivo 10.1186/s12915-018-0624-2 2019 genome and base editing of a human PCSK9 knock-in hypercholesterolemic mouse model. BMC biology 17, 4. Wuts 2006 P.G.M. Wuts, T.W. Greene, ISBN: 978-1118057483 Greene’s Protective Groups in Organic Synthesis 4th ed., J. Wiley & Sons, 2006. Ley and Ley and Thomas, 10.1002/anie.200300594 Thomas 2003 Angew. Chem. Int. Ed.2003, 42, 5400-5449 Miyaura and Miyaura and Suzuki, Chem. Rev. 10.1021/cr00039a007 Suzuki 1995 1995, 95, 2457-2483
Cordovilla Cordovilla et al., 10.1021/acscatal.5b00448 2015 ACS Catal. 2015, 5, 3040-3053 Chen 2020 Chen et al., Adv. Synth. Catal.2020, 10.1002/adsc.202000495 362, 3311-3331 Chan 2022 Chan et al., Chem. Rev. 2022, 122, 10.1021/acs.chemrev.1c00383 1485−1542 Kim 2024 Kim et al., Org. Process Res. Dev. 10.1021/acs.oprd.3c00281 2024, 28, 1, 188–209 Grundy 2018 Grundy et al., J. Am. Coll. Cardiol., 10.1016/j.jacc.2018.11.003 2019, 73(24), 3237-3241 Phan 2012 Phan et al., Vasc Health Risk 10.2147/VHRM.S33664 Manag. 2012, 8, 415-27 Awad 2018 Awad et al., Drugs, 2018, 78(4), 10.1007/s40265-018-0870-1 453-462 Agarwala and Agarwala and Goldberg, Future 10.2217/fca-2020-0016 Goldberg Cardiol., 2020, 16(5), 361-371 2020 For standard molecular biology techniques, see Sambrook, J., Russel, D.W. Molecular Cloning, A Laboratory Manual.3 ed.2001, Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
Numbered Statements A A1. a compound of Formula (I) A-B-C (I) or a pharmaceutically acceptable salt thereof, wherein A is of one of the following formulae:
wherein the wavy line indicates the point of attachment to B; RA1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, or C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH; RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl; (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl;
(x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon which is optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) NH2; (x) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvii) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xviii) C1-6 sulfonimodyl; (xix) C1-6 alkyl phosphinyl; (xx) carboxy; (xxi) C(=O)NH2; (xxii) C1-6 alkyl ester; (xxiii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiv) C1-6 alkyl amido; or wherein RA3 and RA2 together with the carbon atoms to which they are bound form: (i) an optionally substituted C5-7 heterocycle ring;
(ii) an optionally substituted C5-7 heteroaromatic ring; (iii) an optionally substituted C6 carboaromatic ring; (iv) an optionally substituted C5-7 carbocyclic ring wherein, when present, the one, two, three or four optional substituents independently selected from C1-6alkyl, halo, C1-6 alkoxy, NH2, C1-6alkylamino, OH, and CN;
wherein the wavy line indicates the point of attachment to B; Z6 is either N or C-H Z7 is either N or C-RA8 Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA8 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl, or one or more halo groups; (vi) C4 heterocycyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl;
(viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2;
where RA9 is selected from H; methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1-methylcyclopropyl and 2-methylcyclopropyl; wherein B is of formula
wherein the wavy line indicates the point of attachment to A and C; RB1 is H, OH, =CHCH2-OH, C1-4 alkyoxy, or C1-4 alkyl which C1-4 alkyl is optionally substituted by OH or OMe; wherein C is of formula:
where RN is H or methyl; RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups;
where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy; (vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; and (ix) C1-6 alkyl acyl. A2. The compound of statement A1, or a pharmaceutically acceptable salt thereof, wherein RA2 is selected from H, chloro, methyl, and OCF2H. A3. The compound of statement A1 or statement A2, or a pharmaceutically acceptable salt thereof, wherein RA3 is selected from the group consisting of H, methyl and OH. A4. The compound according to statement A1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae;
A5. The compound of any one of statements A1 to A4, or a pharmaceutically acceptable salt thereof, wherein B is of formula (B-1)
wherein the wavy lines indicate the point of attachment to A and C; wherein RB1 is selected from the group consisting of -H, -OH, -OMe, -O-ethyl, -CH2OH, -CH2CH2OH and =CHCH2-OH. A6. The compound of any one of statements A1 to A5, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1a):
A7. The compound of any one of statements A1 to A5, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1b):
A8. The compound according to any one statements A1 to A7, or a pharmaceutically acceptable salt thereof, wherein C is of the formula;
wherein Q1, Q2, Q3 and Q4 are either all C-H or one of Q1, Q2, Q3 and Q4 is selected from N, C- CN and C-P(=O)(Me)2 and the remaining three are C-H. A9. The compound according to any one of statements A1 to A8, or a pharmaceutically acceptable salt thereof, wherein C is selected from one of the following formulae;
. A10. The compound of statement A1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (I-A), (I-B), (I-Ba), (I-Bb), (I-C), (I-Ca), (I-Cb), (I-Cc), (I-Cd) and (I-Ce) wherein all definitions are according to statement A1;
A11. The compound of statement A1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formula (II-A), (II-B), (II-Ba), (II-Bb), (II-C), (II-Ca), (II-Cb), (II-Cc), (II-Cd) and (II- Ce) wherein all definitions are according to statement A1;
20137788--WWO- PPCT 1688 H H NJ UN 7° oe ZN < 2° LY \z2Z 78 z8 H H Nv UN N= vA, 7-N ZN 9 i 78 H H Nv UN =( A, 9 Z a = ZN z8 H H Nv UN N= vA, 79-\ r EN z8 " H N N
20137788--WWO- PPCT 1699
A12. The compound of statement A1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formula (III-A), (III-B), (III-C), (III-Ca), (III-Cb), (III-Cc), (III-Cd) and (III-Ce) wherein all definitions are according to statement A1:
20137788--WWO- PPCT 1711 H
pharmaceutically acceptable salt thereof. A14. A compound listed in Table 1 or a pharmaceutically acceptable salt thereof. A15. The compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, for use in therapy. A16. A pharmaceutical composition comprising the compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable diluent, carrier or excipient. A17. The compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to statement A16 for use in the treatment of a cardiovascular disease.
A18. The compound for use according to statement A17 wherein the compound is administered simultaneously, separately or sequentially in combination with an additional active ingredient selected from the group consisting of: i) a statin; ii) a cholesterol absorption inhibitor; iii) a SGLT2 inhibitor; iv) a P2Y12 inhibitor; v) a ATP-citrate lyase inhibitor; and vi) anti-hypertensive drugs. A19. The compound for use according to statement A17 or A18 wherein the cardiovascular disease is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure and congestive heart failure. A20. Use of a compound of any one of statements A1 to A14 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to statement 16 in a method of medical treatment. A21. A method of medical treatment comprising administering to the patient the pharmaceutical composition of statement A16. A22. Use of a compound of any one of statements A1 to A14 in the manufacture of a medicament for use in therapy. A23. A method of treating PCSK9-mediated disease or disorder in a patient in need thereof comprising administering to the patient a therapeutically effective amount of the compound or pharmaceutically acceptable salt thereof according to any one of statements A1 to A14 or the pharmaceutical composition according to statement A16. A24. The method according to statement A23, wherein the disease or disorder is a cardiovascular disease or disorder. A25. The method according to statement A24, wherein the cardiovascular disease or disorder is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke,
vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure or congestive heart failure.
Numbered Statements B B1. a compound of Formula (I) A-B-C (I) or a pharmaceutically acceptable salt thereof, wherein A is of one of the following formulae:
wherein the wavy line indicates the point of attachment to B; X1 is N or C-RA3; RA1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, or C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH; RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl);
(vii) C1-6 thioalkyl; (viii) C1-6 alkyl ester; (ix) C1-6 alkyl acyl; (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon which is optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) NH2; (x) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvii) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xviii) C1-6 sulfonimodyl; (xix) C1-6 alkyl phosphinyl; (xx) carboxy; (xxi) C(=O)NH2; (xxii) C1-6 alkyl ester; (xxiii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiv) C1-6 alkyl amido;
or wherein RA3 and RA2 together with the carbon atoms to which they are bound form: (i) an optionally substituted C5-7 heterocycle ring; (ii) an optionally substituted C5-7 heteroaromatic ring; (iii) an optionally substituted C6 carboaromatic ring; (iv) an optionally substituted C5-7 carbocyclic ring wherein, when present, the one, two, three or four optional substituents independently selected from C1-6alkyl, halo, C1-6 alkoxy, NH2, C1-6alkylamino, OH, and CN;
wherein the wavy line indicates the point of attachment to B; Z1 is selected from O or S; RA5 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups; and (v) C1 alkoxy, optionally substituted by one or more halo groups; RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl; (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl;
RA7 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocyclyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2;
wherein the wavy line indicates the point of attachment to B; Z6 is either N or C-H Z7 is either N or C-RA8 Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA8 is selected from the group consisting of: (i) H;
(ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl, or one or more halo groups; (vi) C4 heterocycyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2;
where RA9 is selected from H; methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1-methylcyclopropyl and 2-methylcyclopropyl;
where RA4 is selected from H, CN, -OCF2H, cyclopropyl, Cl, and methyl; wherein B is of formula
wherein the wavy line indicates the point of attachment to A and C;
RB1 is H, OH, =CHCH2-OH, C1-4 alkyoxy, or C1-4 alkyl which C1-4 alkyl is optionally substituted by OH or OMe; wherein C is of formula:
where X is hydrogen or fluorine; where RN is H, methyl or benzyl optionally substituted with a C1-3 alkoxy group; RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups; where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy; (vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; (ix) C1-6 alkyl acyl; and (x) oxo. B2. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein RA4 is methyl. B3. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A is of formulae (A1a), (A2b), (A3a), and (A3b). B4. The compound of any one of the preceding statements, or a pharmaceutically acceptable salt thereof, wherein (A1a) is of formula (A1):
B5. The compound of any one of statements B1 to B3 or a pharmaceutically acceptable salt thereof, wherein (A1a) is selected from one of the following formulae:
B6.The compound of any one of the preceding statements, or a pharmaceutically acceptable salt thereof, wherein RA2 is selected from H, chloro, methyl, CF3, and OCF2H. B7. The compound of any one of the preceding statements, wherein RA2 is selected from methyl, CF3 and OCF2H. B8.The compound of any one of statements B1 to B4, or a pharmaceutically acceptable salt thereof, wherein RA3 is selected from the group consisting of H, methyl and OH. B9. The compound of statement B8, or a pharmaceutically acceptable salt thereof, wherein RA3 is H. B10. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein RA7 is H. B11. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein (A2a) is selected from one of the following formulae:
. B12. The compound of any one of statements any preceding claims, or a pharmaceutically acceptable salt thereof, wherein Z7 is CH.
B13. The compound of statement B12, or a pharmaceutically acceptable salt thereof, wherein (A2b) is of formula (A2b5):
B14. The compound of any preceding claim, or a pharmaceutically acceptable salt thereof, wherein RA9 is methyl. B15.The compound according to statement B1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae:
B16. The compound according to statement B1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae: .
B17. The compound according to statement B1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae;
. B18. The compound of any preceding statement, or a pharmaceutically acceptable salt thereof, wherein B is of formula (B-1)
wherein the wavy lines indicate the point of attachment to A and C; wherein RB1 is selected from the group consisting of -H, -OH, -OMe, -O-ethyl, -CH2OH, -CH2CH2OH and =CHCH2-OH. B19. The compound of any preceding statement, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1a):
B20. The compound of any preceding statement, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1b):
B21. The compound of any preceding statement, or a pharmaceutically acceptable salt thereof, wherein (C1a) is of formula (C1):
where RN is H or methyl;
RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups; where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy; (vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; and (ix) C1-6 alkyl acyl. B22. The compound according to any one of statements B1 to B20, or a pharmaceutically acceptable salt thereof, wherein C is of the formula:
wherein Q1, Q2, Q3 and Q4 are either all C-H; or one of Q1, Q2, Q3 and Q4 is selected from N, C- CN, C-CONMe2, and C-P(=O)(Me)2 and the remaining three are C-H; or one of Q1, Q2, Q3 and Q4 is N-Me and one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the remaining two are C-H. B23.The compound according to statement B22, or a pharmaceutically acceptable salt thereof, wherein Q1, Q2, Q3 and Q4 are all C-H; or one of Q1, Q2, Q3 and Q4 is N-Me, one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the other two are C-H. B24.The compound according to statement B23, or a pharmaceutically acceptable salt thereof, wherein Q1, Q2, Q3 and Q4 are all C-H; or one of Q1 and Q2 is N-Me and the other is C=O and Q3 and Q4 are C-H. B25. The compound of any one of statements B1 to B20, or a pharmaceutically acceptable salt thereof, wherein C is selected from one of the following formulae:
B26. The compound according to any one of statements B1 to B20, or a pharmaceutically acceptable salt thereof, wherein C is selected from one of the following formulae:
; B27. The compound according to any one of statements B1 to B20, or a pharmaceutically acceptable salt thereof, wherein C is selected from: ,
B28. The compound according to statement B1, or a pharmaceutically acceptable salt thereof, wherein A is selected from;
and C is selected from;
. B29. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (I-Ax), (I-Bx), (I-By), (I-Bax), (I-Bay), (I-Bbx), and (I-Bcx) wherein all definitions are according to statement B1;
B30. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (I-Cx), (I-Cax), (I-Cbx), (I-Ccx), (I-Cdx), (I-Cex), (I-Cfx), and (I-Cgx) wherein all definitions are according to statement B1 or formula (C-2a);
20137788--WWO- PPCT 1899
B31. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (IV-A), or (IV-B) wherein all definitions are according to statement B1 or formula (C-2a):
B32. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (II-Ax), (II-Aax), (II-Abx), (II-Acx), (II-Adx), (II-Bx), (II-Bax), (II-Bbx) wherein all definitions are according to statement B1;
20137788--WWO- PPCT 1911
B33. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (II-Cx), (II-Cax), (II-Cbx), (II-Ccx), (II-Cfx) and (II-Cgx) wherein all definitions are according to statement B1 or formula (C-2a);
B34. The compound of statement B1, or a pharmaceutically acceptable salt thereof, wherein A-B-C is of the formulae (III-Ax), (III-Bx), (III-Cx), (III-Cax), (III-Cbx), (III-Ccx), (III-Cfx) and (III- Cgx) wherein all definitions are according to statement B1 or formula (C-2a);
B35. The compound of any one of statements B1 to B20, B22 to B26, and B28 to B34, or pharmaceutically acceptable salts thereof, wherein X is F. B36.The compound any one of statements B1 to B20, B22 to B26, and B28 to B34, or pharmaceutically acceptable salts thereof, wherein X is H. B37. The compound of statement B1, wherein the compound is selected from one of the compounds listed in Table 1 and 2 or a pharmaceutically acceptable salt thereof. B38. The compound of statement B1, wherein the compound is selected from one of the compounds listed in Table 1 or a pharmaceutically acceptable salt thereof. B39. The compound of any preceding statement or a pharmaceutically acceptable salt thereof, for use in therapy. B40. A pharmaceutical composition comprising the compound of any one of statements B1 to B38 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable diluent, carrier or excipient. B41. The compound of any one of statements B1 to B38 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to statement B40 for use in the treatment of a cardiovascular disease.
B42. The compound or pharmaceutically acceptable salt thereof for use according to statement B41 wherein the compound is administered simultaneously, separately or sequentially in combination with an additional active ingredient selected from the group consisting of: i) a statin or pharmaceutically acceptable salt thereof; ii) a cholesterol absorption inhibitor or pharmaceutically acceptable salt thereof; iii) a SGLT2 inhibitor or pharmaceutically acceptable salt thereof; iv) a P2Y12 inhibitor or pharmaceutically acceptable salt thereof; v) a ATP-citrate lyase inhibitor or pharmaceutically acceptable salt thereof; and vi) anti-hypertensive drugs or pharmaceutically acceptable salt thereof. B43. The compound or pharmaceutically acceptable salt thereof for use according to statement B41, wherein the treatment comprises administering to a subject in need thereof, a first amount of a compound of Formula (I), or a pharmaceutically acceptable salt thereof and a second amount of at least one additional active ingredient, wherein the first amount and the second amount together comprise a therapeutically effective amount. B44. The compound or pharmaceutically acceptable salt thereof for use according to statement B43, wherein the at least one additional active ingredient may be selected from (a) a statin or pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof. B45. The compound or pharmaceutically acceptable salt thereof for use according to statement B44, wherein the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof. B46. The compound or pharmaceutically acceptable salt thereof for use according to statement B44, wherein the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof and ezetimibe or a pharmaceutically acceptable salt thereof. B47. The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B44 to B46, wherein the statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof.
B48. The compound or pharmaceutically acceptable salt thereof for use according to statement B47, wherein the statin is selected from atorvastatin, rosuvastatin, lovastatin, pravastatin, simvastatin and fluvastatin; and pharmaceutically acceptable salts thereof. B49. The compound or pharmaceutically acceptable salt thereof for use according to statement B48, wherein the statin is rosuvastatin or a pharmaceutically acceptable salt thereof. B50. The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B45 to B49, wherein the statin is administered in a moderate-intensity dosing. B51. The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B45 to B49, wherein the statin is administered in a high-intensity dosing. B52. The compound or pharmaceutically acceptable salt thereof for use according to statement B44, wherein the at least one additional active ingredient is ezetimibe or a pharmaceutically acceptable salt thereof. B53. The compound or pharmaceutically acceptable salt thereof for use according to statement B46 or B52, wherein ezetimibe is administered in a dose of from 5 to 15 mg per day. B54. The compound or pharmaceutically acceptable salt thereof for use according to statement B53, wherein the ezetimibe is administered in a dose of 10 mg per day. B55. The compound or pharmaceutically acceptable salt thereof for use according to statement B44, wherein the at least one additional active ingredient is bempedoic acid or a pharmaceutically acceptable salt thereof. B56. The compound or pharmaceutically acceptable salt thereof for use according to statement B55, wherein bempedoic acid is administered in a dose of 150 to 200 mg per day. B57. The compound or pharmaceutically acceptable salt thereof for use according to statement B56, wherein bempedoic acid is administered in a dose of 180 mg per day. B58. The compound or pharmaceutically acceptable salt thereof for use according to any one of statements B41 to B57 wherein the cardiovascular disease is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic
kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure and congestive heart failure. B59. The compound or pharmaceutically acceptable salt thereof for use according to statement B58 wherein the cardiovascular disease is dyslipidemia. B60. Use of a compound of any one of statements B1 to B38 or a pharmaceutical composition according to statement B40 in a method of medical treatment. B61. A method of medical treatment comprising administering to the patient the pharmaceutical composition of statement B40. B62. Use of a compound of any one of statements B1 to B38 in the manufacture of a medicament for use in therapy. B63. Use of a compound according to statement B62, wherein the medicament is for use in the treatment of a cardiovascular disease. B64. Use of a compound according to statement B63, wherein said treatment comprises the separate, sequential or simultaneous administration of i) said medicament comprising a compound of Formula (I), or a pharmaceutically acceptable salt thereof and ii) at least one additional active ingredient to a subject in need thereof. B65. Use of a compound according to statement B64, wherein the at least one additional active ingredient may be selected from (a) a statin or a pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof. B66. A method of treating PCSK9-mediated disease or disorder in a patient in need thereof comprising administering to the patient a therapeutically effective amount of the compound or pharmaceutically acceptable salt thereof according to any one of statements B1 to B38 or the pharmaceutical composition according to statement B40. B67. The method according to statement B66, further comprising the separate, sequential or simultaneous administration of at least one additional active ingredient to a subject in need thereof.
B68. The method according to statement B67, further comprising administering to a subject in need thereof, a first amount of the compound of Formula (I), or a pharmaceutically acceptable salt thereof and a second amount of the at least one additional active ingredient, wherein the first amount and the second amount together comprise a therapeutically effective amount. B69. The method according to statement B68, wherein the at least one additional active ingredient may be selected from (a) a statin or pharmaceutically acceptable salt thereof, (b) ezetimibe or a pharmaceutically acceptable salt thereof, and/or (c) bempedoic acid or a pharmaceutically acceptable salt thereof. B70. The method according to statement B69, wherein the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof. B71. The method according to statement B69, wherein the at least one additional active ingredient is a statin or pharmaceutically acceptable salt thereof and ezetimibe or a pharmaceutically acceptable salt thereof. B72. The method according to any one of statements B69 to B71, wherein the statin is selected from atorvastatin, cerivastatin, fluvastatin, lovastatin, mevastatin, pitavastatin, pravastatin, velostatin, compactin, dihydrocompactin, dalvastatin, fluindostatin, rosuvastatin, and simvastatin; and pharmaceutically acceptable salts thereof. B73. The method according to statement B72, wherein the statin is selected from atorvastatin, rosuvastatin, lovastatin, pravastatin, simvastatin and fluvastatin; and pharmaceutically acceptable salts thereof. B74. The method according to statement B73, wherein the statin is rosuvastatin or a pharmaceutically acceptable salt thereof. B75. The method according to any one of statements B69 to B74, wherein the statin is administered in a moderate-intensity dosing. B76. The method according to any one of statements B69 to B74, wherein the statin or pharmaceutically acceptable salt thereof is administered in a high-intensity dosing. B77. The method according to statement B69, wherein the at least one additional active ingredient is ezetimibe or pharmaceutically acceptable salt thereof.
B78. The method according to statement B71 or B77, wherein ezetimibe is administered in a dose of from 5 to 15 mg per day. B79. The method according to statement B78, wherein the ezetimibe is administered in a dose of 10 mg per day. B80. The method according to statement B69, wherein the at least one additional active ingredient is bempedoic acid or pharmaceutically acceptable salt thereof. B81. The method according to statement B80, wherein bempedoic acid is administered in a dose of 150 to 200 mg per day. B82. The method according to statement B81, wherein bempedoic acid is administered in a dose of 180 mg per day. B83. The method according to any one of statements B66 to B82, wherein the disease or disorder is a cardiovascular disease or disorder. B84. The method according to statement B83, wherein the cardiovascular disease or disorder is selected from dyslipidemia, hypercholesterolemia, hypertriglyceridemia, hyperlipidemia, hypoalphalipoproteinemia, metabolic syndrome, diabetic complications, atherosclerosis, stroke, vascular dementia, chronic kidney disease, coronary heart disease, coronary artery disease, retinopathy, inflammation, thrombosis, peripheral vascular disease heart failure or congestive heart failure. B85. The method according to statement B84, wherein the cardiovascular disease or disorder is dyslipidemia.
Claims
Claims 1. a compound of Formula (I) A-B-C (I) or a pharmaceutically acceptable salt thereof, wherein A is of one of the following formulae:
wherein the wavy line indicates the point of attachment to B; X1 is N or C-RA3; RA1 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, one or more halo groups, or C1-6 alkyl amido; (vi) C1-6 alkyl ester; (vii) C1-6 alkyl acyl; and (viii) OH; RA2 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by OH, C1-6 alkyl amido, or one or more halo groups; (vi) C1-6 acylamido (wherein the acyl is optionally substituted by H or methyl); (vii) C1-6 thioalkyl; (viii) C1-6 alkyl ester;
(ix) C1-6 alkyl acyl; (x) C4-5 heterocyclyl; (xi) C5 heteroaryl; (xii) C1-6 alkyl amido, optionally substituted by C1-3 alkyl amido, CN, OH, C2-3 alkynyl, C4-6 heterocyclyl, or C1-3 alkyl wherein the C1-3 alkyl is optionally substituted with one or more halo or OH groups; (xiii) OH; and (xiv) C1-6 alkylamino; RA3 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon which is optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, carboxy, C1-6 alkyl ester, C1-6 alkylamino, -C(=O)NH2, C1-6 alkyl amido, C1-6 alkyl acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) OH; (vi) C1-6 alkoxy, optionally substituted by OH, NH2, C4 heterocyclyl or one or more halo groups; (vii) C1-6 acyloxy; (viii) C4 heterocycyl; (ix) NH2; (x) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl; (xi) C1-6 dialkylamino, optionally substituted by -NH2; (xii) C1-6 acylamido (where acyl substituent is H or Me); (xiii) carbaimidoyl or methyl-carbaimidoyl; (xiv) carboxyamino; (xv) C1-6 thioalkyl, optionally substituted by OH or NH2; (xvi) C1-6 alkyl sulfinyl; (xvii) C1-6 alkyl sulfonyl, optionally substituted by one or more halo groups; (xviii) C1-6 sulfonimodyl; (xix) C1-6 alkyl phosphinyl; (xx) carboxy; (xxi) C(=O)NH2; (xxii) C1-6 alkyl ester; (xxiii) C1-6 alkyl acyl, optionally substituted by one or more halo groups; and (xxiv) C1-6 alkyl amido; or wherein RA3 and RA2 together with the carbon atoms to which they are bound form:
(i) an optionally substituted C5-7 heterocycle ring; (ii) an optionally substituted C5-7 heteroaromatic ring; (iii) an optionally substituted C6 carboaromatic ring; (iv) an optionally substituted C5-7 carbocyclic ring wherein, when present, the one, two, three or four optional substituents independently selected from C1-6alkyl, halo, C1-6 alkoxy, NH2, C1-6alkylamino, OH, and CN;
wherein the wavy line indicates the point of attachment to B; Z1 is selected from O or S; RA5 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1 alkyl optionally substituted by one or more OH, CN, or one or more halo groups; and (v) C1 alkoxy, optionally substituted by one or more halo groups; RA6 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino; (vii) C1-6 thioalkyl; (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA7 is selected from the group consisting of:
(i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl and one or more halo groups; (vi) C4 heterocyclyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2;
wherein the wavy line indicates the point of attachment to B; Z6 is either N or C-H Z7 is either N or C-RA8 Z8 and Z9 are independently selected from the group consisting of: (i) H; (ii) halo; (iii) CN; (iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 alkyl acyl, C1-6 alkoxy or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by C1-6 alkyl amido, C1-6 alkyl phosphonyl, or one or more halo groups; (vi) C1-6 alkylamino (vii) C1-6 thioalkyl, (viii) C1-6 alkyl phosphinyl; and (ix) C1-6 alkyl phosphonyl; RA8 is selected from the group consisting of: (i) H; (ii) halo; (iii) CN;
(iv) C1-6 hydrocarbon, optionally substituted by OH, CN, C1-6 thioalkyl, C1-6 alkoxy, C1-6 alkyl acyl, C1-6 acyloxy, C(=O)OH, C1-6 alkyl ester, C1-6 alkylamino; -C(=O)NH2, C1-6 alkyl amido, C1-6 acylamido, C1-6 alkyl sulfinyl, C1-6 alkyl sulfonyl or one or more halo groups; (v) C1-6 alkoxy, optionally substituted by NH2, C4 heterocyclyl, or one or more halo groups; (vi) C4 heterocycyl; (vii) C1-6 alkylamino, optionally substituted by CN, OH, or C4 heterocyclyl; (viii) C1-6 dialkylamino, optionally substituted by -NH2; and (ix) C1-6 thioalkyl, optionally substituted by OH or -NH2;
where RA9 is selected from H; methyl, ethyl, n-propyl, i-propyl, cyclopropyl, 1-methylcyclopropyl and 2-methylcyclopropyl;
where RA4 is selected from H, CN, -OCF2H, cyclopropyl, Cl, and methyl; wherein B is of formula
wherein the wavy line indicates the point of attachment to A and C; RB1 is H, OH, =CHCH2-OH, C1-4 alkyoxy, or C1-4 alkyl which C1-4 alkyl is optionally substituted by OH or OMe;
wherein C is of formula:
where X is hydrogen or fluorine; where RN is H, methyl or benzyl optionally substituted with a C1-3 alkoxy group; RC1 and RC2 together with the carbon atoms to which they are bound form a fused benzene ring or a C6 heteroaromatic ring, which rings are optionally substituted by one or more RC3 groups; where RC3 is selected from (i) CN; (ii) P(=O)Me2; (iii) C(=O)OH; (iv) C1-6 hydrocarbon optionally substituted by C1-6 alkoxy; (v) C1-6 alkoxy; (vi) C1-6 alkyl amido; (vii) C5-6 heteroaryl; (viii) halo; (ix) C1-6 alkyl acyl; and (x) oxo.
2. The compound of claim 1, wherein A is of formulae (A1a), (A2b), (A3a), and (A3b).
3. The compound of claim 1 or 2, wherein (A1a) is of formula (A1):
.
4. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein A is of formulae (A1), (A2b), (A3a), and (A3b).
5. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein (A1a) is selected from one of the following formulae:
6.The compound of any preceding claim, or a pharmaceutically acceptable salt thereof, wherein RA2 is selected from H, chloro, methyl, CF3, and OCF2H. 7.The compound of any one of claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein RA3 is selected from the group consisting of H, methyl and OH. 8. The compound of claim 1 or 2, or a pharmaceutically acceptable salt thereof, wherein (A2a) is selected from one of the following formulae:
. 9. The compound of claim 1 or 2, or a pharmaceutically acceptable salt thereof, wherein (A2b) is of formula (A2b5):
10. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein RA9 is methyl. 11.The compound according to claim 1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae;
12. The compound according to claim 1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae: .
13. The compound according to claim 1, or a pharmaceutically acceptable salt thereof, wherein A is selected from the formulae:
. 14. The compound of any preceding claim, or a pharmaceutically acceptable salt thereof, wherein B is of formula (B-1):
wherein the wavy lines indicate the point of attachment to A and C; wherein RB1 is selected from the group consisting of -H, -OH, -OMe, -O-ethyl, -CH2OH, -CH2CH2OH and =CHCH2-OH. 15. The compound of any preceding claim, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1a):
16. The compound of any preceding claim, or a pharmaceutically acceptable salt thereof, wherein B is of the following formula (B-1b):
17. The compound according to any preceding claim, or a pharmaceutically acceptable salt thereof, wherein C is of the formula;
wherein Q1, Q2, Q3 and Q4 are either all C-H; or one of Q1, Q2, Q3 and Q4 is selected from N, C- CN, C-C(=O)NMe2, and C-P(=O)(Me)2 and the remaining three are C-H; or one of Q1, Q2, Q3 and Q4 is N-Me and one of the adjacent Q1, Q2, Q3 or Q4 is C=O and the remaining two are C-H. 18. The compound of any one of claims 1 to 16, or a pharmaceutically acceptable salt thereof, wherein C is selected from one of the following formulae:
19. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein A is selected from:
20. The compound according to any one of claims 1 to 18, or a pharmaceutically acceptable salt thereof, wherein X is F. 21. The compound according to any one of claims 1 to 18, or a pharmaceutically acceptable salt thereof, wherein X is H. 22. The compound of claim 1, wherein the compound is selected from one of the compounds listed in Tables 1 and 2 or a pharmaceutically acceptable salt thereof. 23.The compound of any one of claims 1 to 22 or a pharmaceutically acceptable salt thereof, for use in therapy. 24 A pharmaceutical composition comprising the compound of any one of claims 1 to 22 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable diluent, carrier or excipient. 25. The compound of any one of claims 1 to 22 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition according to claim 24 for use in the treatment of a cardiovascular disease.
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
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| EP24164963 | 2024-03-20 | ||
| EP24164963.1 | 2024-03-20 |
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| WO2025196155A1 true WO2025196155A1 (en) | 2025-09-25 |
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| Application Number | Title | Priority Date | Filing Date |
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| PCT/EP2025/057561 Pending WO2025196155A1 (en) | 2024-03-20 | 2025-03-19 | Pcsk9 inhibitors and methods of use thereof |
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| WO (1) | WO2025196155A1 (en) |
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