WO2024186271A1 - Synthetic channels - Google Patents
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- WO2024186271A1 WO2024186271A1 PCT/SG2024/050136 SG2024050136W WO2024186271A1 WO 2024186271 A1 WO2024186271 A1 WO 2024186271A1 SG 2024050136 W SG2024050136 W SG 2024050136W WO 2024186271 A1 WO2024186271 A1 WO 2024186271A1
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- C—CHEMISTRY; METALLURGY
- C02—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F1/00—Treatment of water, waste water, or sewage
- C02F1/44—Treatment of water, waste water, or sewage by dialysis, osmosis or reverse osmosis
- C02F1/441—Treatment of water, waste water, or sewage by dialysis, osmosis or reverse osmosis by reverse osmosis
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01D—SEPARATION
- B01D67/00—Processes specially adapted for manufacturing semi-permeable membranes for separation processes or apparatus
- B01D67/0002—Organic membrane manufacture
- B01D67/0006—Organic membrane manufacture by chemical reactions
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01D—SEPARATION
- B01D69/00—Semi-permeable membranes for separation processes or apparatus characterised by their form, structure or properties; Manufacturing processes specially adapted therefor
- B01D69/12—Composite membranes; Ultra-thin membranes
- B01D69/125—In situ manufacturing by polymerisation, polycondensation, cross-linking or chemical reaction
- B01D69/1251—In situ manufacturing by polymerisation, polycondensation, cross-linking or chemical reaction by interfacial polymerisation
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01D—SEPARATION
- B01D69/00—Semi-permeable membranes for separation processes or apparatus characterised by their form, structure or properties; Manufacturing processes specially adapted therefor
- B01D69/14—Dynamic membranes
- B01D69/141—Heterogeneous membranes, e.g. containing dispersed material; Mixed matrix membranes
- B01D69/142—Heterogeneous membranes, e.g. containing dispersed material; Mixed matrix membranes with "carriers"
- B01D69/144—Heterogeneous membranes, e.g. containing dispersed material; Mixed matrix membranes with "carriers" containing embedded or bound biomolecules
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01D—SEPARATION
- B01D71/00—Semi-permeable membranes for separation processes or apparatus characterised by the material; Manufacturing processes specially adapted therefor
- B01D71/06—Organic material
- B01D71/56—Polyamides, e.g. polyester-amides
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01D—SEPARATION
- B01D71/00—Semi-permeable membranes for separation processes or apparatus characterised by the material; Manufacturing processes specially adapted therefor
- B01D71/06—Organic material
- B01D71/74—Natural macromolecular material or derivatives thereof
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- C—CHEMISTRY; METALLURGY
- C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
- C08L—COMPOSITIONS OF MACROMOLECULAR COMPOUNDS
- C08L75/00—Compositions of polyureas or polyurethanes; Compositions of derivatives of such polymers
- C08L75/02—Polyureas
Definitions
- Biomimetic membranes embedded with aquaporin (AQP) or artificial water channels (AWC) had been developed to meet the industry needs.
- aquaporin exhibits high water permeability, its long-term stability is a limiting factor.
- Fresh water scarcity currently affects over 4 billion people worldwide and is a growing challenge faced by civilization. High population, industrialization, deforestation and climate change led to depletion and contamination of natural water resources, all of which increase the demand for fresh water. Fresh water sources are becoming scarce and competing demands such as industrial needs, domestic use for the increasing population will make water a scarce commodity in the future. The effects of climate change will exacerbate this problem. Approximately half of the world population suffers from water scarcity or lack of clean drinking water.
- the main structural feature of the aquaporin hydrophobic interior is a narrow 3 ⁇ diameter pore, composed of a key asparagine-proline-alanine (NPA) motif, which enables the transport of water molecules in a single file.
- NPA asparagine-proline-alanine
- RO reverse osmosis
- the present disclosure refers to an oligourea foldamer comprising one or more sequences selected from the group consisting of SEQ ID NO: 1 (Ac-L U E U L U K U P U L U E U L U K U A U -NH2) and SEQ ID NO: 2 (Ac-L U E U L U K U A U L U E U L U K U A U -NH2).
- the present disclosure refers to a compound comprising oligourea foldamers as disclosed herein.
- the present disclosure refers to a permeable membrane comprising the oligourea foldamer as disclosed herein or the compound as disclosed herein.
- the present disclosure refers to a method of purifying water, the method comprising allowing water to pass through a filtration device comprising the permeable membrane as disclosed herein.
- a filtration device comprising the permeable membrane as disclosed herein.
- Fig.1B shows the sequences of synthesized amphipathic oligourea foldamers H2OC1, H2OC2, H2OC3 and H2OC4. Highlighted residues represent the point mutation to H2OC1.
- Fig.1C shows circular dichroism (CD) spectra of oligourea foldamers show a peak at ⁇ 202 nm indicating their helical conformation.
- Fig. 1D shows CD spectra of H2OC2 in water exhibit concentration-dependent increase of molar ellipticity at ⁇ 202 nm.
- Fig.1E and Fig.1F show negative-stained transmission electron micrographs of H2OC1 (Fig. 1E) and H2OC2 (Fig. 1F) revealed self-assembled morphologies at 200 ⁇ M in 10 mM HEPES buffer, pH 7.0. They showed fibre-like networks packed in large, knotted bundles (H2OC2, diameter ranging from 12.4 to 40.0 nm) and distinct fibres (H2OC1, diameter 5.5 ⁇ 0.6 nm).
- Fig.1G and Fig.1H show electrospray ionization (ESI) mass spectrometry profiles of H2OC1 (Fig. 1G) and H2OC2 (Fig. 1H), respectively.
- ESI electrospray ionization
- Fig.2 shows an overview of biophysical properties of foldamer insertion into lipid vesicles.
- Fig. 2A shows 31P static solid-state NMR experiments performed at 303K on PC/PS control vesicles and PC/PS vesicles incorporating H2OC1 and H2OC2.
- Fig. 2B shows 2 H static solid-state NMR experiments performed at 303K.
- Fig.2C shows a line graph depicting thermal variation of the first spectral moment M1 of PC lipids as measured by 2 H solid state NMR.
- Fig.2D shows a graph depicting C- 2 H order parameter as a function of labelled lipid carbon position.
- Fig. 2E shows a single particle cryo-EM image of self- assembled channels of H2OC1 in a liposome. The top left panel shows a low magnification image. Arrows point to three channels in the enlarged view (i) the boxed area (ii) showing an array of channels, see Fig. 2G.
- Fig.2F shows a single particle cryo-EM image of control liposome without H2OC1. The magnified image shows a contiguous membrane without channels (iii).
- Fig.2G shows a magnified image showing the array of channels (arrows) in the lipid bilayer.
- Fig. 2H shows two-dimensional (2D) average images of H2OC1 EM particles (top). Two representative channels are outlined with dashed boxes.2D averages of EM particle images of control liposomes (bottom); no obvious channel density was observed.
- Fig.2I shows an image indicating the size of each channel, the distance between two neighbouring channels, and the membrane are indicated. The outer diameter of individual channels is 26 ⁇ , compared to 29 ⁇ in the crystal structure of H2OC1. The distance between two adjacent channels is 37 ⁇ .
- Fig.3 shows the results of measurements of water and ion transport through oligourea foldamers.
- Fig.3 shows the results of measurements of water and ion transport through oligourea foldamers.
- FIG. 3A Schematic representation of water permeability measurement through foldamer channels in presence of phosphatidylcholine/phosphatidylserine (PC/PS) vesicles while mixing with hypertonic osmolyte (600 mM sucrose).
- Fig. 3B shows the results of stopped-flow analysis of oligourea foldamers, which shows water permeation through foldamer channels in PC/PS (4:1) vesicles.
- Fig. 3C shows light scattering traces of H2OC2 embedded in PC/PS vesicles with different molar ratio. This shows an increasing water permeability with increased channel concentration while mixing with hypertonic osmolyte (600 mM sucrose).
- Fig. 3D shows results indicating that water permeability through H2OC2 channel measured at different channel densities exhibited a jump in permeability when lipid/channel molar ratio reached 100:1 to 50:1. This indicates a possible cooperativity.
- FIG. 3G shows salt rejections by H2OC1 and H2OC2 with respect to natural ionophore gA and foldamers H2OC3 and H2OC4 as evidenced from curve.
- gA gramicidin A.
- Fig. 3H shows a schematic representation of chloride-selective ion transport by SPQ dye based on fluorescence assay.
- Fig. 3I shows results indicating chloride-selective ion transport. Results obtained by SPQ-based quenching assays show rejection of chloride ion by H2OC1, H2OC2 and H2OC3. Concentration-dependent fluorescence quenching observed upon addition of H2OC4 indicating chloride transport by foldamer H2OC4. [0015] Fig.
- FIG. 4 shows images of the crystal structure revealing quaternary structure of foldamer H2OC1.
- Fig.4A is an image of the crystal structure of H2OC1 showing a helical conformation of the monomer with a distinct hydrophobic and hydrophilic surfaces.
- Fig.4B is an image of crystal packing showing two distinct channels (Figs. 4A and 4B).
- channel B is formed in the interspace of four channel A assemblies. Both channels are packed through hydrophobic interactions of exterior surfaces.
- eight monomeric oligourea helices per turn are packed laterally. The neighbouring helices are in an antiparallel orientation within the superhelical structure.
- Fig.4C shows images of the crystal structure with water molecules that are H-bonded with the foldamer, shown as spheres, in the pores of channels A and B. Water molecules that do not form any H-bonding with foldamer helices are shown as well. Only selected water molecules are displayed.
- Fig.4D shows water molecules in the pore form a H-bonding network with charged residues, Glu U and Lys U . Hydrogen bonds show O-O and N-O distances of 2.7 and 3.6 ⁇ , respectively. Images were created using PyMOL.
- FIG.5 shows data of molecular dynamics simulations of H2OC1 oligourea channel in POPC:POPS (4:1 ratio) lipid bilayer.
- Fig. 5A shows that the H2OC1 oligourea channel composed of 8 helical and 16 kinked helices embedded in lipid bilayer together with simulation snapshots: i) prior to any simulation, ii) after 200 ns of equilibration with position restraints on helical foldamer alpha carbon atoms, iii) after 600 ns of the production run without any restraints.
- Surface representation of the helices are shown in dark grey.
- the 16 kinked helices are shown in light grey stick representation.
- Spheres correspond to phospholipid head groups.
- Fig 5B shows the control system of the H2OC1 oligourea channel composed of 8 helices alone together with simulation snapshots: iv) after 200 ns of equilibration with position restraints on alpha carbon atoms, v) after 600 ns of the production run without any restraints.
- Fig. 5C shows the root mean-square-deviation (RMSD) of alpha carbon atoms from 8 helices calculated with respect to the experimental structure.
- RMSD root mean-square-deviation
- Fig.5D and Fig.5E show the number of water molecules (Fig.5D) and number of ions (Fig.5E) passing through both channel types (shown in Fig.5A and Fig.5B) over the last 200 ns of the trajectory are shown.
- Fig.5F and Fig.5G show the average channel radius profile across the membrane normal (the two radius profile tracings in each represent the standard deviation limits) together with snapshots of the averaged density of the solvent within the pore (light grey, traversing the membrane) are shown for the two cases, namely, with (Fig.5(F)) and without kinked (Fig.5(G)) helices.
- the radius profile as well as solvent density were averaged over the last 200 ns of the production run.
- Fig.6 shows graphs depicting the solid phase synthesis of oligourea H2OC1.
- Fig. 6C shows the electrospray ionization mass spectrum of H2OC1 foldamer (pure). Expected M.W.1484.88 Da; observed M.W.1485.25 Da ([M+H] + ), 743.19 Da ([M+2H] 2+ ), 495.82 Da ([M+3H] 3+ ).
- Fig.7 shows graphs depicting the solid phase synthesis of oligourea H2OC2.
- Fig. 7C shows the electrospray ionization mass spectrum of H2OC2 foldamer. Expected M.W. 1458.84 Da; observed M.W.1459.99 Da ([M+H] + ), 730.00 Da ([M+2H] 2+ ), 486.99 Da ([M+3H] 3+ ).
- Fig.8 shows graphs depicting the solid phase synthesis of oligourea H2OC3.
- Fig.8A shows the chemical structure of H2OC3 foldamer.
- Fig.8B shows ESI-MS spectrum of H2OC3 foldamer.
- Fig.9 shows graphs depicting the solid phase synthesis of oligourea H2OC4.
- Fig. 9C shows the electrospray ionization mass spectrum of H2OC4 foldamer.
- FIG.10 shows the results of a variable-concentration CD analysis of foldamers.
- Foldamer H2OC1 (Fig. 10A), H2OC3 (Fig. 10B) and H2OC4 (Fig. 10C) are shown to exhibit concentration-dependent increase of molar ellipticity at 202 nm in pure water.
- Fig.10D shows the results of a CD analysis of H2OC1 and H2OC2 at pH 4.4 exhibiting helical conformation.
- Fig.11 shows the results of the biophysical characterization of H2OC3 and H2OC4 foldamers.
- Fig. 11A shows a TEM image of H2OC3 showing spherical morphology with 24.3 ⁇ 8.7 nm in diameter.
- Fig. 11B shows the native electrospray ionization (ESI) mass spectrometry profile of H2OC3 showing a major peak distribution at 1819.27 indicating pentameric [5 4+ ] species.
- Fig.11C show a TEM image of H2OC4 showing long filament like self-assembly with a width of 132.1 ⁇ 24.4 nm. Inset exhibiting close view of a discrete filament.
- Fig.12 shows histograms depicting the hydrodynamic radius of foldamer embedded PC/PS (4:1) lipid vesicles. Histogram plot of foldamers embedded in lipid vesicles was determined by dynamic light scattering (DLS).
- Fig. 13 shows the stopped flow data of foldamer embedded PC/PS (4:1) lipid vesicles. Light scattering traces of H2OC1, H2OC2, H2OC3, H2OC4 and gA embedded in PC/PS (4:1) vesicles with molar ratio 1:100 (foldamer:lipid) show an increasing water permeability compared to blank (without foldamer) while mixing with a hypertonic osmolyte (600 mM sucrose).
- Fig. 14 shows a histogram depicting the water permeability of H2OC2 at different PC/PS molar ratio. H2OC2. shows increased water permeability until PC/PS molar ratio reach 4:1 followed by decreasing water permeability with increased PS concentration.
- Fig. 15 shows a histogram depicting the water permeability of H2OC2 in presence of different osmolytes. H2OC2 showed water permeability in presence of sucrose, glycine and glucose in PC/PS (4:1) lipid vesicles.
- Fig.16 shows graphs depicting data indicating that foldamers reject divalent ion transport.
- Results of HPTS assays show that H2OC1 and H2OC2 did not transport divalent ions Mg 2+ and Ca 2+ (MgCl2 and CaCl2) in PC/PS (4:1) lipid vesicles.
- Fig.17 shows the results of the analysis of proton transport of H2OC1 and H2OC2 by patch-clamp technique in PC/PS (4:1) lipid.
- Fig.18 shows the results of the analysis of proton transport of H2OC1 and H2OC2 by patch-clamp technique in DOPC lipid.
- Fig.19 shows the results of ion transport analysis of H2OC1 by patch-clamp technique in DOPC lipid.
- Fig.20 shows the results of ion transport analysis of H2OC2 by patch-clamp technique in DOPC lipid.
- Fig.21 shows the results of ion transport analysis of H2OC1 and H2OC2 by patch-clamp technique in PC/PS (4:1) lipid.
- Fig. 22 shows images depicting the structural comparison of H2OC1 and H2 crystal structures. Dashed lines showing intramolecular H-bonding. Nitrogen atoms and oxygen atoms are coloured blue and red, respectively. All canonical helical intramolecular H-bonds are observed except at the C-terminal region of H2OC1 helices.
- Fig.23 shows crystal structures showing water filled channels in H2OC1. Crystal form shown with all water molecules (top) and selected water molecules only (bottom). Water molecules are shown as spheres. Carbon, nitrogen and oxygen atoms are coloured white, blue and red, respectively.
- Fig. 24 shows crystal structures showing water wires in the H2OC1 channel.
- FIG.25 shows stick-and-ball as well as ribbon 3D models of a H2OC1 channel with kinked helix. (top, left) A distorted helix filling the void space in between the neighbouring channels highlighted with magenta colour in H2OC1. It has a kink region near Pro U and Lys U .
- Fig.26 shows images depicting the H2OC1 and H2OC2 nanostructures. Results of TEM analysis of H2OC1 (Fig.26A) and H2OC2 (Fig.26B) under conditions (10 mM HEPES pH 7.5, 25% isopropanol) similar to those of crystallization are shown. Both show long fibres with different fibre widths of 20.674 ⁇ 2.53 and 9.31 ⁇ 0.52 nm, respectively.
- FIG.27 shows line graphs showing molecular dynamics simulations of H2OC1 oligourea channel in POPC:POPS (4:1 ratio) lipid bilayer.
- Fig.27A shows the permeation pathway length (membrane normal axis) over last 200 ns of the simulation time, while Fig.27B shows the number hydrogen bonds between water molecules and side chains of two glutamic acids of H2OC1 helical oligoureas.
- Fig.28 shows a scheme of the solid-phase synthesis and cleavage of the oligourea foldamers.
- Fig.29 shows a schematic overview of the subject matter described in the present disclosure.
- Fig.30 shows images obtained from the single-particle cryo-EM analysis of H2OC1 reconstituted in liposome.
- Fig. 30A shows a representative cryo-EM image of H2OC1 sample with several particles marked by circles.
- FIG. 30B shows an image processing flowchart of H2OC1.
- Fig.30C shows images of 2D averages of cryo-EM particle images of H2OC1.
- the box dimension is 200 ⁇ .
- Fig. 30D shows a representative cryo-EM image of empty liposome sample with several particles marked by circles.
- Fig.30E shows an image processing flowchart of empty liposome control.
- Fig.30F shows an image of 2D averages of cryo-EM particle images of the control.
- the box dimension is 200 ⁇ .
- DETAILED DESCRIPTION [0042] Biomimetic membranes incorporating artificial water channels (AWC) are being developed for industrial water purification. Achieving high water permeation with salt rejection remains a challenge to be overcome while designing artificial water channels.
- Natural porins are the perfect examples of selective water transport through the cell membrane. [0043] There has yet to be an attempt to create artificial water channels from sequence-defined proteinomimetic foldamers that are used as scaffolds that self-assemble into precise quaternary nanostructures with intrinsic porosity (i.e., self-assembled foldamer-based porin-like channels).
- N,N’- linked oligoureas are a class of synthetic peptidomimetic foldamers that have been demonstrated to form well-defined helical structures in both organic and aqueous environment akin to regular peptide helices.22 Amphipathic sequences with a patch of hydrophobic side chains at the surface of the helix have been shown to self-assemble into various quaternary structures including nanotubular structures. These oligourea sequences were synthesized using solid phase techniques akin to peptide synthesis, from enantiopure activated monomers prepared from amino acid derivatives (building blocks [BBs]).
- BBs building blocks
- the building blocks were protected on one side as azides and activated at the other extremity as succinimidyl carbamates (e.g., N3-Leu U -OSu).
- these foldamers are substantially more resistant to proteolytic degradation due to their oligourea (i.e., non amide) backbone.
- oligourea i.e., non amide
- These different properties make them potential candidates for synthesizing artificial water channels.
- amphiphilic oligourea foldamers which are able to form transmembrane channels exhibiting high water permeability rejecting all ions.
- the non-natural oligomers described herein form tunable helical scaffolds self-assembled in Porin-like nanostructures.
- Oligourea foldamers form predictable, helical structures that can be used to create similar biomimetic porin-like architectures.
- H2OC1, H2OC2 allow water permeability of up to 88.7 ⁇ m/s across lipid membranes while providing almost total salt rejection.
- Solid-state NMR experiments suggest proper insertion of foldamers into lipid vesicles, without perturbing the lipid phase, thermotropism and internal dynamics.
- the H2OC1 crystal structure shows that oligourea helices pack together by hydrophobic and salt bridge interactions to build two channel-like assemblies. These channels differ in their hydrogen bonding patterns and result in hydrophilic pores of diameter 4.8 and 6.4 ⁇ , respectively.
- Molecular dynamics simulation supports the experimental data on transport properties and indicates that H2OC1 can form a stable channel in lipid membranes.
- the selectivity of water and ions through foldamer assemblies is regulated at the sequence level.
- Ease of design, synthesis, purification, proteolytic stability, and microbial resistance of oligourea foldamers are added advantages.
- the information obtained and disclosed herein has been used to develop novel artificial water channels for water purification applications.
- the present disclosure refers to the design of synthetic, self-assembling, helical oligourea foldamers that form artificial water channels.
- H2OC1 and H2OC2 Two of the foldamers (H2OC1 and H2OC2) obtained by solid phase synthesis self-assembled into channel-type nanostructures that show efficient water permeability across lipid membranes, while rejecting ions.
- a self- assembled quaternary structure with two superhelical scaffolds results in the formation of 4.8 and 6.4 ⁇ inner pores that were observed in the crystal packing of H2OC1. Both pores have hydrophilic interior and hydrophobic exterior surfaces.
- the findings disclosed herein demonstrate the channel forming ability of oligourea foldamers in lipid bilayers and the use of such artificial water channels in water purification applications.
- N,N’-linked oligoureas are a class of synthetic peptidomimetic foldamers which have been demonstrated to form well-defined helical structures in both organic and aqueous environment akin to regular peptide helices.
- Amphipathic sequences with a patch of hydrophobic side chains at the surface of the helix have been shown to self-assemble into various quaternary structures including nanotubular structures.
- oligourea sequences were synthesized using, for example, solid-phase techniques akin to peptide synthesis, from enantiopure activated monomers prepared from amino acid derivatives (building blocks, BB).
- the building blocks are protected on one side as azides and activated at the other extremity as succinimidyl carbamates (e.g., N 3 -Leu U -OSu).
- succinimidyl carbamates e.g., N 3 -Leu U -OSu
- these foldamers are more resistant to proteolytic degradation due to their oligourea (i.e. non amide) backbone.
- oligourea foldamers which are able to form transmembrane channels exhibiting high water permeability rejecting all ions.
- These non-natural oligomers are shown herein to form tuneable helical scaffolds self-assembled in porin-like nanostructures.
- the state of oligomerization was investigated by mass spectrometry and transmission electron microscopy (TEM).
- TEM transmission electron microscopy
- the molecular insertion into lipid vesicles was investigated by solid-state NMR spectroscopy. Their water and ion permeability properties were further characterised in lipid vesicles.
- shown herein are their three-dimensional structures elucidated by X-ray crystallography.
- the high-water permeability coupled with resistance to proteolytic degradation makes these novel synthetic foldamers possible candidates for industrial water purification applications.
- the designed and synthesized helical amphipathic oligourea foldamers can be used to generate artificial porins, as a new class of artificial water channels.
- the chemical synthesis can be scaled up with sequence-based tunability of their properties. They self-assemble to form channel-type structures that exhibit selective water permeability across lipid bilayers.
- the crystal packing of one foldamer shows a superhelical assembly resulting in the formation of a porin-like superstructure with a hydrophilic pore of 4.8 ⁇ diameter.
- the resistance of oligoureas to proteolytic degradation could offer long-term stability indicating their suitability for water purification.
- H2OC1-H2OC4 scaffolds were designed based on a 10- mer showing an extended superhelical structure with two right-handed intertwined superhelices that form a channel in aqueous conditions with hydrophilic interior and a pore diameter of about 17 ⁇ due to its global amphipathicity.
- the oligourea sequence composed of two pentad repeats, has been designed to form an amphipathic helix with an extended hydrophobic face using the following principles.
- H2OC2 a second analogue H2OC2 was prepared in which Pro U is replaced with Ala U at position ‘e’ (Fig. 1A; 1B). It is shown that Pro U does not interfere significantly with the helicity of oligoureas, unlike Pro in peptide chains.
- H2OC3 two Glu U were replaced with the less hydrophilic Asn U at the ‘b’ sites of pentads (Fig.1A;1B). Such substitutions were made to reduce the interaction with water in the polar channel and facilitate faster water flow.
- the analogue H2OC4 was designed by replacing Ala U and Pro U residues with Phe U at position ‘e’ in both pentads of H2OC1 (Fig. 1A;1B). Such aromatic Phe-type residues are thought to favourably interact with fatty acyl chains and lipid head groups. All oligourea foldamers were synthesized on a solid support using microwave assistance (Fig. 34; Table 2; and Figs.6 to 9) and purified according to previously established procedures. [0053] The specific structures described herein are the result of the amino acid sequence of foldamers claimed herein.
- H2OC3 showed vesicle-like morphology with about 24 to 33 nm diameter (Fig.11A).
- H2OC4 formed longer filaments with about 132 to 156 nm width (Fig.11C).
- ESI-MS analyses revealed the presence of discrete multimeric species ranging from pentamer to nonamer of H2OC1 and H2OC2 in aqueous condition (Fig.1G; 1H).
- H2OC3 showed a predominant pentameric species (Fig. 11B).
- the cryo-EM image shows that the foldamer channels were inserted in an orderly fashion without perturbating the lipid phase.
- rod-shaped densities corresponding to transmembrane channels were observed, which were absent in empty liposome images (Figs. 2E and 2F). These channels are evenly distributed along the circular plane of the membrane (Fig. 2G).
- Two- dimensional (2D) classification with a box size of 200 ⁇ yielded average images of two channels embedded in the membrane (Fig.2H).
- no corresponding dense regions were visible in the 2D averages of the empty liposome control (Fig.2H).
- the individual channels were 26 ⁇ wide, consistent with the crystal structure (29 ⁇ ). Direct visualization of two neighbouring channels allowed us to further measure their distance (Fig.
- H2OC2 and PC/PS vesicles were mixed to obtain foldamer/lipid molar ratios from 1:1000 to 1:50 in 10 mM HEPES buffer, pH 7.0.
- the light scattering intensity increased with exposure to an equal volume of hypertonic osmolyte (600 mM sucrose) with the increasing foldamer ratio (Figs.3C; 2D). This indicates that increasing the molar ratio results in effective increase in incorporation of foldamers into the vesicles, leading to enhanced water permeation.
- the calculated water permeability (Pf) values of H2OC2 vary from 10.5 ⁇ m/s (foldamer/lipid ratio 1:400), 23.2 ⁇ m/s (at 1:200) to 88.7 ⁇ m/s (at 1:50) (Fig.3C; 3D), close or improved compared to water permeability observed with gramicidin A (gA) channels.
- H2OC2 also showed water permeability in the presence of other osmolytes such as glycine and glucose (Fig.15). Furthermore, the water permeability at pH 4.5 was lower than that at pH 7.0.
- the channel number was calculated to be about 1,665 per liposome (for a 1:100 molar ratio where 135 ⁇ M of H2OC1 was used in 13,500 ⁇ MPC/PS).
- the net osmotic permeability (Pf) of H2OC1 was calculated as 34.44 ⁇ m/s.
- Pf osmotic permeability
- Proton/ Ion transport properties of foldamers [0061] High, selective water transport is a key feature for an artificial water channel (AWC). Another important feature that is equally important for water purification is its ability to reject ions transport. Therefore, the ion transport properties of selected foldamers disclosed herein was tested in PC/PS (4:1) vesicles using standard fluorescence based HPTS assay (Fig. 3E).
- the HPTS loaded vesicles were incubated with the foldamers for 5 minutes before the experiments.
- a base pulse (20 ⁇ l of 0.5 N NaOH) was given at 50 seconds of the measurement to increase the external pH from 7.0 to 8.0.
- the natural ionophore gA, a monovalent cation selective channel was used as a positive control (Figs. 3F;3G).
- the changes in fluorescence intensity showed that H2OC3 (36%) and H2OC4 (25%) channels can moderately transport Na + and K + ions. Ion transport facilitated by the foldamers was shown to be much lower than that of gA (Figs.3F; 3G).
- the foldamers, and membranes disclosed herein have the ability to reject salt, if and when present in the solution to be purified.
- salts are, but not limited to, NaCl, NaNO 3 , MgCl 2 , CaCl 2 , and KCl.
- SPD chloride-selective dye 6-methoxy- N-(3-sulfopropyl) quinolinium
- the conductance values were at the same level when it came to DOPC lipid as shown in Fig.18.
- H2OC1 presents a better channel shape, longer retention time and higher channel opening probability at both lipid conditions.
- protons are transferred overall along water wires.
- the oligourea foldamer is water permeable. In another example, the oligourea foldamer is selectively ion permeable or ion impermeable.
- channels A and B Two distinct channels can be identified in the crystal structure of H2OC1, namely channels A and B with an external diameter of 29 ⁇ each (Fig.4B). These channels show apparent pore diameters of 4.8 and 6.4 ⁇ , respectively.
- channel B the electron density maps for C-terminal Lys U9 , and Ala U10 residues are not ‘visible’ leading to overestimation of its pore size.
- the exterior surface is composed of the hydrophobic residues Leu U , Ala U , Pro U located at positions ‘a’, ‘c’ and ‘e’ in the helical-wheel representation.
- the pore of the channels is lined by the hydrophilic residues Glu U and Lys U situated at positions ‘b’ and ‘d’ (Fig. 4B).
- oligourea helices per turn associate laterally in a right- handed, staggered, antiparallel orientation by hydrophobic and electrostatic interactions within the superhelical structure.
- the intricate H-bonding network of salt-bridges between neighbouring oligourea helices greatly contributes to stabilize the pore structure.
- the hydrophilic pore is hydrated with both H- bonded (to the Glu U and Lys U side chains) and mobile water molecules (Figs.4C, 4D, and 23 to 24).
- a single turn (23 ⁇ ) can span across half the thickness of the phospholipid bilayers. Crystal packing also revealed the presence of distorted helices that fill the void spaces between channel assemblies.
- TEM analysis of H2OC1 under conditions similar to crystallization conditions showed extended fibre assembly with external diameter of about 20.6 nm (Fig.26A). These fibres may be formed of five- to six-channel units across its diameter. In contrast, H2OC2 fibre bundles are about 9.3 nm in diameter (Fig.26). [0067] Thus, in one example, an oligourea foldamer is described. In one example, the oligourea foldamer self-assembles.
- the oligourea foldamer comprises or consists of one or more sequences, which can be, but are not limited to SEQ ID NO: 1 (Ac-L U E U L U K U P U L U E U L U K U A U -NH2) and SEQ ID NO: 2 (Ac-L U E U L U K U A U L U E U L U K U A U -NH2).
- the oligourea foldamer sequence is that of SEQ ID NO: 1.
- the oligourea foldamer sequence is that of SEQ ID NO: 2.
- the oligourea foldamers self-assemble into a three-dimensional nanostructure under aqueous conditions.
- the three-dimensional nanostructure is a helix or a pore.
- the pore has an internal diameter of between 4.5 ⁇ to 6.5 ⁇ , between 4.6 ⁇ to 4.9 ⁇ , between 4.8 ⁇ to 6.0 ⁇ , between 4.9 ⁇ to 6.5 ⁇ , between 5.0 ⁇ to 5.5 ⁇ , between 5.8 ⁇ to 6.3 ⁇ , between, or between 6.0 ⁇ to 6.5 ⁇ .
- the pore has an internal diameter of about 4.5 ⁇ , about 4.6 ⁇ , about 4.7 ⁇ , about 4.8 ⁇ , about 4.9 ⁇ , about 5.0 ⁇ , about 5.1 ⁇ , about 5.2 ⁇ , about 5.3 ⁇ , about 5.4 ⁇ , about 5.5 ⁇ , about 5.6 ⁇ , about 5.7 ⁇ , about 5.8 ⁇ , about 5.9 ⁇ , about 6.0 ⁇ , about 6.1 ⁇ , about 6.2 ⁇ , about 6.3 ⁇ , or about 6.4 ⁇ .
- MD All-atom molecular dynamics
- the experimental crystal structure of the H2OC1 channel composed of 8 monomeric helices was used, as well as 16 kinked H2OC1 oligourea helices positioned on the side of the channel.
- This construct was embedded in a POPC: POPS (4:1 ratio; POPC: 1- palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, POPS: palmitoyl-oleoyl phosphatidylserine) lipid bilayer (Fig. 5Ai).
- a small fraction of ions could enter both channels, in agreement with experimental observations (Fig. 2E; 2I). Averaged radius profiles as well as averaged density of solvent in both channels is shown in Figs.5F-5G. Although both channels have a radius in the membrane centre of mass corresponding to about 0.2 nm, the H2OC1 channel with kinked peptides showed a longer permeation pathway. In summary, computer simulations showed that kinked peptides can stabilise the H2OC1 channel, which allows more water molecules to permeate through the membrane. [0072] The present disclosure shows the design and synthesis of oligourea foldamers that form superhelical water channels in aqueous condition stabilized by hydrophobic and electrostatic interactions.
- Oligourea foldamers H2OC1 and H2OC2 showed water permeability with high salt rejection in liposomes.
- H2OC3 and H2OC4 showed permeability to ions along with water in liposomes.
- a high- resolution crystal structure of H2OC1 revealed that salt-bridges facilitate intricate H-bonding network among proximal and distal oligourea residues to stabilize the packing that was confirmed by the formation of fibres of the same dimension that were observed by TEM.
- Solid-state NMR data indicated stable insertion of foldamers without perturbing the lipid vesicles.
- the design of the amphiphilic foldamers resulted in the formation of self-assembled tertiary structures conferring a hydrophobic exterior and hydrophilic interior lumen filled with H-bonded water clusters. This results in high water permeability across lipid membranes, indicating the use of these foldamers in the production of artificial water channel (AWC) membranes for water purification applications.
- AWC artificial water channel
- the oligourea foldamer disclosed herein is water permeable.
- the foldamers disclosed herein laterally self-assemble to form the channel.
- H2OC1 and H2OC2 N-terminal are blocked by small, acetyl group.
- H2OC1 and H2OC2 the C-terminal has an amide group. Both these changes affect the oligomerization and pore formation.
- Pro U is replaced by Ala U .
- TEM Transmission electron microscopy
- H2OC2 forms large fiber bundles with knots (diameter ranging from 12.4 to 39.3 nm) compared to H2OC1, which forms untangled fibers of diameter 5.5 ⁇ 0.6 nm.
- Crystal structures of H2OC1 shows its oligomerization status.
- H2OC1 forms only one right-handed superhelix with 8 oligourea helices per superhelical turn.
- H2OC1 assembly shows two types of hydrophilic pores with internal diameters of 4.8 ⁇ and 6.4 ⁇ .
- Functional characterization of H2OC1 and H2OC2 [0078] The results indicate that both H2OC1 and H2OC2 exhibit high water permeability with high salt rejection across lipid membranes. Using fabricated test membranes, use of H2OC1 and H2OC2 for water purification has been shown. [0079] The structural changes at the N- and C-termini of the claimed peptides led to changes in the self- assembly and channel formation.
- pore size of channels formed by H2OC1 are smaller (4.8 – 6.4 ⁇ ) compared to 17 ⁇ pore formed by other peptides know in the art. Based on the similarity in functional properties and, without being bound by theory, it is thought that H2OC2 forms channels with similar pore size as H2OC1. Collectively, this indicates the use of the claimed peptides suitable for water purification.
- Oligourea foldamer-embedded membranes can be used in for water filtration by reverse osmosis or forward osmosis methods, as well as sea water reverse osmosis (SWRO) membrane preparation and performance evaluation. Uses [0081] Reverse osmosis (RO) is a membrane purification method.
- the currently available seawater reverse osmosis (SWRO) membranes require around 3.5 kWh/m 3 of electricity for routine commercial desalination projects.
- the process has pre-treatment stage prior to the second pass reverse osmosis and yields drinking water at 50% recovery rate based on the feed water.
- One strategy to reduce the energy cost is to increase the water permeability rate. But increased water permeability tends to reduce salt rejection by membranes.
- the commercial thin film composite (TFC) seawater reverse osmosis (SWRO) membranes currently in use have best water permeance of between 1 to 2 Lm -2 h -1 bar -1 with ⁇ 99% NaCl rejection. Therefore, novel strategies to develop high-performance seawater reverse osmosis (SWRO) membranes that require lower operational energy are necessary.
- test membranes incorporating a selective layer of oligourea foldamer-embedded liposomes on the PSF membranes exhibited enhanced water permeability with ⁇ 99% salt rejection.
- the test membranes have about 3 Lm- 2 h -1 bar -1 water permeability. This indicates that the energy use can be significantly reduced with such membranes.
- SWRO seawater reverse osmosis
- Another process for water filtration is by forward osmosis (FO) using membranes, which requires less pressure to be applied. This can be applied in industries where water content must be removed without loss of other components present in the solution, including ions.
- Additional uses include: (a) concentrating fruit juices, (b) purification of brackish water, and (c) in pharmaceutical industries for concentrating products after solution phase manufacturing steps.
- membrane modules incorporating a selective layer of liposome-embedded aquaporin proteins, including those disclosed herein.
- Test membrane performance [0085] A polysulfone (PSF) flat sheet, seawater reverse osmosis (SWRO) test membrane was prepared with its polyamide selective layer incorporated with the foldamer-containing liposomes by spraying to a uniform thickness.
- PSF polysulfone
- SWRO seawater reverse osmosis
- H2OC1 and H2OC2 membranes showed enhanced water permeability of 3.19 ⁇ 0.01 Lm -2 h -1 bar -1 and 3.09 ⁇ 0.02 Lm -2 h -1 bar -1 , respectively, compared to the test membrane coated with liposome lacking foldamers (2.89 ⁇ 0.01 Lm -2 h -1 bar -1 ) (Table 1). This indicates that the increased water permeability is due to the incorporated foldamer channels.
- oligomers comprising the short foldamer molecules disclosed herein possess one or more of the characteristics selected from, for example, high water permeability, high salt rejection, sequence-based functional tunability, convenient design and chemical synthesis, proteolytic stability, and ease of scalability. Furthermore, both membranes containing foldamer channels showed high NaCl rejection (>98.76 %). These results shown the feasibility and performance of incorporating H2OC1 and H2OC2 membranes in the fabrication of artificial channel-based biomimetic membrane for brackish reverse osmosis desalination.
- a permeable membrane comprising the oligourea foldamer disclosed herein or the compound disclosed herein.
- the membrane is water permeable and/or selectively ion permeable.
- the membrane is ion impermeable.
- the oligourea foldamer rejects 99% of ions.
- the oligourea foldamer is water permeable.
- Also envisioned herein is a method of purifying water using the membranes and methods disclosed herein. In one example, the method comprises allowing water to pass through a filtration device comprising the permeable membrane described herein.
- the method comprises applying the permeable membrane as disclosed herein, wherein the permeable membrane is water permeable and rejects 99% of salt present in the solution to be purified.
- the membranes disclosed herein can be used for test membrane studies, for example, as follows: Biomimetic membranes can be fabricated with the foldamer-embedded liposomes as a water selective (ion rejecting) layer on top of an ultrafiltration membrane.
- the test membrane was a polysulfone (PSF) flat sheet, SWRO test membrane - prepared with its polyamide selective layer incorporated with the foldamer-containing liposomes by spraying to a uniform thickness.
- H2OC1 and H2OC2 test membranes showed enhanced water permeability over the controls without the foldamer incorporation.
- An exemplary method of the fabrication of the membranes disclosed herein follows: Membrane modules can be fabricated as (a) hollow fiber modules, and (b) as spiral wound modules.
- short helical amphiphathic oligourea foldamers were designed with distinct hydrophobic and hydrophilic faces.
- Two of the foldamers obtained by solid phase synthesis self-assembled into channel-type nanostructures that show efficient water permeability across lipid membranes while rejecting ions.
- a self-assembled quaternary structure with two superhelical scaffolds results in the formation of 4.8 and 6.4 ⁇ inner pores that were observed in the crystal packing of H2OC1.
- the term “about”, in the context of concentrations of components of the formulations, typically means +/- 5% of the stated value, more typically +/- 4% of the stated value, more typically +/- 3% of the stated value, more typically, +/- 2% of the stated value, even more typically +/- 1% of the stated value, and even more typically +/- 0.5% of the stated value.
- certain embodiments may be disclosed in a range format. It should be understood that the description in range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the disclosed ranges.
- control membranes were coated with liposomes lacking the foldamers.
- Membrane performance was tested for 1 hour with 35 g/l NaCl solution (NaCl concentration 35000 ppm) at an operating pressure of 50 bar, and a cross-flow velocity of 10cm/s.
- the CCDC code for the crystal structure of foldamer H2OC1 is: 2211250, and the data collection and refinement statistics for the X-ray crystal structure are provided in Table 3.
- Synthesis of building blocks and oligourea foldamers [00107] Oligourea foldamers were synthesized by standard solid phase peptide synthesis methods using azide chemistry. Synthesis of appropriate azidoalkyl succinimidyl carbamate monomers was carried out by solution phase chemistry methods published earlier. NovaPEG Rink amide resin (0.45 mmol/g) was used to synthesize the foldamers.
- the synthesized foldamers were purified by reversed-phase high- performance liquid chromatography (RP-HPLC) using C18 column (C18-RP HPLC) and characterized by mass spectrometry (MS) and analytical RP-HPLC.
- Solid phase synthesis of full oligourea [00108] The compounds H2OC1, H2OC2, H2OC3 and H2OC4 were synthesized according to previously reported procedures in a polypropylene SPE tube in microwave reactor (CEM Discover) on NovaPEG Rink amide resin (NovaBiochem substitution 0.45 mmol/g) using variable scales (0.050- 0.075 mmol).
- the resin was swelled in dichloromethane (DCM) (3 mL) and in dimethylformamide (DMF) (3 mL) for 2 hours.
- DCM dichloromethane
- DMF dimethylformamide
- Activated N3-BB (150 ⁇ mol, 1.5 equiv.) and DIEA (40 ⁇ L, 300 ⁇ mol, 3 equiv.) were dissolved in DMF (2 mL) and the solution was added to the reaction vessel. N 2 purge and bubbling in the vessel were performed. All microwave experiments were conducted at atmospheric pressure.
- the vessel was then placed inside the microwave reactor and irradiated (70°C, 25 W, 20 minutes). After 20 minutes, the resin was filtered and washed with DMF (4 ⁇ 3 mL). This coupling step was repeated a second time.
- the resin was washed with a mixture of 1,4-dioxane:H2O (i.e. reduction solvent, 7:3 v/v, 4 ⁇ 3 mL). Then, 1M PMe3 solution in THF (0.75 mL, 750 ⁇ mol, 10 equiv.) and reduction solvent (3 mL) was added. The Staudinger reaction was performed to reduce the azide group under the microwave irradiation (70°C, 25 W, 15 minutes). After the reaction, the resin was filtered and washed with reduction solvent (3x3 mL) and DMF (3x3 mL). The deprotection of Teoc group was performed for 2h at RT in 1M TBAF solution (3 mL, 20 equiv.
- 1M TBAF solution 3 mL, 20 equiv.
- the counterion was exchanged by lyophilizing powder with HCl solution (1.0.05 N HCl (aq) , 2.0.1N HCl (aq) , 3. MQ H 2 O).
- Circular dichroism (CD) [00110] CD experiments of foldamers were carried out using a J-1100 Circular Dichroism spectrophotometer.
- ESI-MS was performed using a Synapt-G2Si (Waters, UK) instrument. Foldamers were analysed in 10 mM HEPES pH 7.0 at a concentration of 200 ⁇ M with a pump flow rate 300 ⁇ L min-1 and source voltage 3kVA. The samples were eluted using methanol in the presence of 0.1% formic acid.
- a Hahn-echo sequence was applied at a 31 P frequency of 161.9 MHz on a 400 MHz (9.4 T) Bruker Avance III HD NMR spectrometer for 31 P static wide-line solid- state NMR. Control data were obtained with lipids without foldamers. Data were acquired at different temperatures (273–318 K). Single particle cryo-EM to determine insertion of H2OC1 channels into lipid vesicles [00114] Liposome samples with or without H2OC1 on glow-discharged Quantifoil holey gold grids (R 1.2/1.3, Cu 400 mesh) were plunge-frozen in liquid ethane cooled by liquid nitrogen (FEI Vitrobot System).
- Cryo-EM data were collected as 34-frame movies (130,000 x magnification) on a Titan Krios electron microscope (Thermo Fisher Scientific). Data were processed using CryoSPARC.2D averages of selected particles (37,219 particles of H2OC1 and 41,535 particles from empty liposomes picked by ‘‘Blob picker’’ after ‘‘patch CTF estimation’’) were obtained by running ‘‘2D classification’’ in CryoSPARC. The number of channels per liposome was calculated based on the dimensions of the liposomes and channels as described below.
- Cryo-EM sample preparation and Data collection [00115] Specifically, 4 ⁇ l of liposome samples were applied to glow-discharged Quantifoil holey gold grids (R 1.2/1.3, Cu 400 mesh). Grids were blotted for 3 seconds at 22°C, 100% relative humidity and plunge-frozen in liquid ethane cooled by liquid nitrogen using a FEI Vitrobot System. Cryo-EM data were collected by Titan Krios electron microscope (Thermo Fisher Scientific), equipped with a K3 Summit direct electron detector (Gatan).34-frame movies were collected at 130,000 ⁇ magnification with a physical pixel size of 0.671 ⁇ /pixel. The exposure time was 6 seconds. The dose was 39 e/ ⁇ per movie stack.
- Cryo-EM image process [00116] EM data were processed using CryoSPARC (v3.3.2). Estimating and correcting for fullframe motion as well as sample deformation was performed using “Patch motion(M)”. The “Patch CTF estimation” was used to estimate defocus variation for tilted, bent, deformed samples. “Blob picker” was applied to particle picking with a box of 200 ⁇ . A total of 37,219 particles of H2OC1 and 41535 particles from empty liposome were extracted. Two-dimensional (2D) averages were obtained through running “2D classification” for two rounds in CryoSPARC.
- the average distance between each two channels is 3.7 nm, so each channel occupies an area of 3.7 nm x 3.7 nm, the number of channels per unit area is: [00118]
- the radius of the imaged liposome was 42.6 nm.
- Size measurement by dynamic light scattering (DLS) [00119] The size of vesicles and foldamers embedded vesicles were determined using dynamic light scattering in Dynapro Wyatt technology.
- the vesicle samples were centrifuged at 12000 rpm for 20 minutes before the measurements. The measurements data were averaged in triplicates.
- Water transport assay by stopped-flow method [00120] In summary, the water permeability was measured using PC:PS (4:1 molar ratio) liposomes with various foldamers (1:100 molar ratio) on a stopped-flow instrument (Chirascan circular dichroism spectrometer, Applied Photophysics, UK).51 The liposomes were exposed to hypertonic osmolytes (600 mM sucrose) leading to shrinkage due to water efflux. [00121] In detail, the samples were prepared by film rehydration method.
- L- ⁇ -phosphatidylcholine (PC)/ L- ⁇ -phosphatidylserine (PS) (4:1) were mixed in methanol and chloroform (1:1) in round bottom flask and evaporated under reduced pressure using rotavapor overnight.
- the resulting thin lipid film was rehydrated with buffer (10 mM HEPES pH 7.0) and mixed well to detach the lipids from the glass surface with occasional vortexing.
- the mixture was further subjected to 9 freeze-thaw cycles (liq. N 2 1 minute and heating dry bath 55°C for 2 minutes) and extruded through 0.2 ⁇ M membrane filter.
- the large unilamellar vesicles (LUVs) obtained by this method contained 5 mM lipids and stored at 4°C until measurement done.
- the particle size of LUV was confirmed using DynaPro dynamic light scattering (DLS).
- the water permeability was measured on a stopped-flow instrument (Chirascan circular dichroism spectrometer, Applied photophysics, UK).
- PC/PS (4:1) lipid vesicles (100 ⁇ L, 5 mM in 10 mM HEPES 7.0) and foldamer (5 ⁇ L, 1mM foldamer stock in double distilled water) were mixed at molar ratio of 100 and equilibrated for 5 minutes before the measurements.
- the vesicles were exposed to hypertonic osmolytes (600 mM sucrose) leading to shrinkage of vesicles due to water efflux.
- the abrupt decrease of vesicles size was monitored by increased light scattering intensity.
- the faster size change with foldamer-incorporated vesicles compared to non-incorporated vesicles indicates a higher water permeability in the former.
- the changes in light scattering with time due to water efflux from vesicles with or without channels can determine water permeability (Pf in cm 3 /s). To obtain net osmotic permeability, the Pf (blank) value of blank vesicles must be deducted from Pf (channel) .
- the film was hydrated with buffer (10 mM HEPES, 100 mM NaCl pH 7.0) having pH-sensitive 8-hydroxypyrene-1,3,6-trisulfonic acid (HPTS, 1 mM) dye.
- buffer 10 mM HEPES, 100 mM NaCl pH 7.0
- HPTS pH-sensitive 8-hydroxypyrene-1,3,6-trisulfonic acid
- the mixture was further subjected to 9 freeze-thaw cycles (liq. N21 minute and heating dry bath 55°C for 2 minutes) and extruded through 0.2 ⁇ M polycarbonate membrane filter to yield homogeneous suspension of LUVs.
- the unencapsulated HPTS dye was removed by size-exclusion chromatography using Sephadex G-50 column and obtained 5 mM lipid stock at the end and stored at 4°C until measurement done.
- HPTS assay Ion transport activity by HPTS assay
- HPTS containing PC/PS (4:1) vesicles 40 ⁇ L, 5 mM in 10 mM HEPES, 100 mM NaCl pH 7.0
- the foldamers (10 ⁇ L, 1mM foldamer stock in double distilled water) and vesicles was equilibrated for 5 minutes before the experiments.
- a base pulse (20 ⁇ L, 0.5M NaOH) was added at 50 seconds of the measurement to increase the pH from 7 to 8.
- the emission was monitored at 510 nm with excitations at both 403 and 460 nm simultaneously for 300 seconds using fluorescence spectrophotometer.
- the vesicles were lysed at the end of the measurements by adding 10% Triton X-100 to obtain maximum fluorescence emission.
- time X-axis
- the data was plotted as a ratiometric value of I460/I403 and normalized (IF).
- IF It- I0/(I ⁇ -I0), where It and I0 are the ratiometric values of I460/I403 before addition of Triton X-100 and I ⁇ is the ratiometric values right after addition of Triton X-100.
- SPQ assay for chloride-selective transport [00125] PC/PS lipids were mixed at 4:1 molar ratio followed by addition with methanol and chloroform (1:1) in round bottom flask and evaporated under reduced pressure using rotavapor. After drying the resulting film for overnight at room temperature, the film was rehydrated 200 mM NaNO3 containing chloride selective SPQ dye (1 mM). The purified vesicles were prepared as mentioned above.
- the SPQ containing vesicle suspensions (40 ⁇ L, 200 mM NaNO3) was added to 200 mM NaCl (1.95 mL).
- the foldamers (10 ⁇ L, 1 mM foldamer stock in double distilled water) was added at 50 seconds of the experiments.
- the emission was measured at 430 nm with excitations at 360 nm for 300 seconds using fluorescence spectrophotometer.
- the vesicles were lysed at the end of the measurements by adding 10% Triton X-100 to obtain maximum change in dye fluorescence emission.
- time (X-axis) was normalized between the point of foldamer addition (i.e.
- a solution of DOPC (Avanti Polar lipids, 25 mg/ml in CHCl3) was dried under N2 gas for 1 hour and then redissolved in decane.
- Salt bridges (KCl/Agar) were placed in the chambers filled with KCl buffer (1 M, 10 mM HEPES, 10 mM Tris), attaching electrodes (Ag/AgCl) which were placed in KCl solution (1 M).
- Planar lipid bilayers were formed by brushing 0.2 ⁇ L of lipid-containing n-decane solution around the aperture, and a stable bilayer were obtained with a capacitance value ranging from 80 to 150 pF without applying any voltage.
- H2OC1 (10 mg/mL in water) were crystallized using sparse-matrix screening kits (Cation suite [Nextal] and Proplex [Molecular Dimensions]) in 96-well plates by sitting-drops method. Crystals were optimized in 24-well plates with the hanging drops method at room temperature as well as at 16°C. Diffraction-quality crystals of H2OC1 were obtained (0.1 M HEPES pH 7.5, 0.2 M ammonium acetate plus 15% v/v isopropanol). X-ray diffraction data were collected on beamline 23-ID-D at the Advanced Photon Source, Argonne National Laboratory and analysed as described earlier.
- X-ray crystallography a lyophilized powder of H2OC1 was dissolved in double distilled water to a final concentration of 10 mg/ml. Crystallization trials were performed using sparse- matrix screening kits (Cation suite (Nextal) and Proplex (Molecular Dimensions)) in standard 96-well sitting-drops. Crystals obtained by this method were then optimized in 24-well plates with hanging drops typically composed of 0.5 ⁇ L foldamer solution and 0.5 ⁇ L crystallization reagent. Crystallization experiments were performed at room temperature as well as at 16C°.
- Diffraction quality crystals of H2OC1 were obtained from a crystallization reagent composed of 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate plus 15% v/v isopropanol within three days at room temperature. Before data collection, crystals were soaked in the crystallization solution supplemented with 25% glycerol as a cryo-protectant and frozen in liquid nitrogen. X-ray diffraction data were collected on beamline 23-ID-D at the Advanced Photon Source, Argonne National Laboratory. Diffraction data were integrated and scaled using XDS7 and CCP49 to a final resolution of 1.2 ⁇ .
- the structure was solved by molecular replacement using the crystal structure of H2’ as a search model using Phaser8 from the CCP4 suite.
- Geometric restraints were generated using PRODRG with model building and restrained refinement performed in Coot and Refmac5, respectively.
- B- factors were refined isotropically for water molecules and anisotropically for all other non-solvent atoms.
- Data collection and refinement statistics can be found in Table 3.
- the structure has been deposited in the CCDC with accession code 2211250. All-atom MD simulations [00132] All-atom simulations were performed using the GROMACS 2018.3 simulation package utilizing the CHARMM36m force field with the TIP3P water model.
- the experimental structure of suprahelical H2OC1 oligourea channel composed of 8 helical monomers and 16 kinked H2OC1 helices was extracted from Fig.24. Topologies were generated using CHARMM-GUI ligand reader and modeler. According to experimental procedures, N-terminus was acetylated (CH3CO-) while C-terminus was amidated (-CONH2) with all residues in a charged state at neutral pH. Two systems were built: i) 8 H2OC1 monomeric oligourea peptides with 16 kinked H2OC1 helices and ii) 8 H2OC1 monomeric oligourea peptides alone as a control.
- a symmetrical lipid bilayer composition corresponded to 1-palmitoyl-2-oleoyl-sn-glycero-3- phosphocholine (POPC) and 1-palmitoyl-2-oleoyl-snglycero-3-phospho-L-serine (POPS) in 4:1 lipid ratio respectively.
- POPC 1-palmitoyl-2-oleoyl-sn-glycero-3- phosphocholine
- POPS 1-palmitoyl-2-oleoyl-snglycero-3-phospho-L-serine
- the model bilayer was generated using CHARMM-GUI membrane builder. The box size was about 10 ⁇ 10 ⁇ 12 nm 3 . Subsequently, either i) or ii) construct was placed in the middle of the membrane. Any lipid within 0.3 nm of the channel were removed ensuring no lipids are inside of the channel.
- TIP3P water molecules were added to the box and 150 mM NaCl salt was added to the box on top of neutralizing overall system charge.
- the energy minimization was performed using steepest descent minimization algorithm with a 0.1 energy step size.
- the system was equilibrated in the NVT and NPT ensemble for 200 ns with position restraints applied to helical H2OC1 peptides backbone atoms and a force constant of 1000 kJ mol -1 nm -2 .
- Unrestrained production run was set to 600 ns in the NPT ensemble.
- a temperature of 310 K was maintained using the velocity rescaling thermostat with additional stochastic term using a time constant of 1 ps.
- Lipids (DMPC-d54 and POPS (4/1 molar ratio, 10 mg total lipids) were mixed and dissolved in CHCl 3 .
- H2OC1 and H2OC2 were dissolved in CHCl 3 / methanol (2:1 volume) and added to the lipid mixture at a ratio of 1/20 (molecule/lipid molar ratio).
- a control sample only constituted by lipids, was also prepared. The solvent was evaporated under a stream of compressed air. The residual lipid film was dispersed in 1 ml of milliQ- filtered water and freeze-dried overnight. The resulting powder was suspended into 100 ⁇ L of deuterium- depleted water to obtain a hydration level of about 90 %.
- Orientational order parameters were calculated for each temperature by using a simulation program for wide line spectra developed in FORTRAN code by Erick Dufourc and implemented in a user-friendly graphical interface (Microsoft.NET) for Windows platforms by Arnaud Grélard.
- a quadrupolar spin-echo sequence was applied at a 2 H frequency of 76.8 MHz on a 500 MHz (11.7 T) Bruker Avance III NMR spectrometer, with a 90° pulse of 3.5 ⁇ s, an echo delay of 50 ⁇ s, a recycle delay of 2 seconds, a spectral width of 500 kHz and 256 scans for each temperature.
- Spectra were acquired at different temperatures, ranging from 273K to 318K. The temperature of the sample was stabilized for 20 minutes prior to the acquisition.
- a Hahn-echo sequence was applied at a 31 P frequency of 161.9 MHz on a 400 MHz (9.4 T) Bruker Avance III HD NMR spectrometer, with a 90° pulse of 8 ⁇ s, an echo delay of 40 ⁇ s, a recycle delay of 5 seconds, a spectral width of 400 ppm and 512 scans for each temperature.
- Spectra were acquired at different temperatures, ranging from 273K to 318K. The temperature of the sample was stabilized for 20 minutes prior to the acquisition.
- the water permeability tests were conducted on a stopped-flow instrument (SFM3000+MOS450, Bio-Logic SAS, Claix, France).
- the abrupt change of the vesicle size under osmotic pressure leads to variation in the light scattering at 90° according to the Rayleigh-Gans theory applied to this system and could be fitted in the form of the sum of two exponential function by using Biokine software.
- the osmotic permeability (Pf) was calculated by following the equation: where k is the exponential coefficient of the change in the light scattering; S and V0 are the initial surface area and volume of the vesicles, respectively; Vw is the molar volume of water, and ⁇ osm is the osmolarity difference.
- Pf osmotic permeability
- H2OC1 showed a slightly higher water permeabilities than H2OC2 at high osmotic pressure.
- PC phosphatidylcholine
- PS phosphatidylserine
- DOPC 1,2-dioleoyl-sn-glycero-3-phosphocholine
- Salt bridges (KCl/Agar) were placed in the chambers filled with 0.1 M HCl solution, attaching electrodes (Ag/AgCl) which were placed in KCl solution (1 M).
- Planar lipid bilayers were formed by brushing 0.2 ⁇ L of lipid containing n-decane solution around the aperture, and a stable bilayer were obtained with a capacitance value ranging from 80 to 150 pF without applying any voltage.
- Salt bridges (KCl/Agar) were placed in the chambers filled with KCl buffer (1 M, 10 mM HEPES, 10 mM Tris), attaching electrodes (Ag/AgCl) which were placed in KCl solution (1 M).
- KCl buffer (1 M, 10 mM HEPES, 10 mM Tris) was used in the cis chamber and the trans chamber was still filled in NaCl buffer (1 M, 10 mM HEPES, 10 mM Tris).
- Topologies were generated using CHARMM-GUI ligand reader and modeler.24 According to experimental procedures, the N-terminus was acetylated (CH3CO-) while the C- terminus was amidated (-CONH2) with all residues in a charged state at neutral pH.
- Two systems were built: i) 8 H2OC1 monomeric oligourea peptides with 16 kinked H2OC1 helices and ii) 8 H2OC1 monomeric oligourea peptides alone as a control. Both systems were minimized in vacuum using steepest descents algorithm for 5,000 steps.
- a symmetrical lipid bilayer composition corresponded to 1-palmitoyl- 2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-L-serine (POPS) in 4:1 lipid ratio, respectively.
- POPC 1-palmitoyl- 2-oleoyl-sn-glycero-3-phosphocholine
- POPS 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-L-serine
- the model bilayer was generated using CHARMM-GUI membrane builder. The box size was ⁇ 10 ⁇ 10 ⁇ 12 nm 3 . Subsequently, either i) or ii) construct was placed in the middle of the membrane. Any lipid within 0.3 nm of the channel were removed ensuring no lipids are inside of the channel.
- TIP3P water molecules were added to the box and 150 mM NaCl salt was added to the box on top of neutralizing overall system charge.
- the energy minimization was performed using steepest descent minimization algorithm with a 0.1 energy step size.
- the system was equilibrated in the NVT and NPT ensemble for 200 ns with position restraints applied to helical H2OC1 peptides backbone atoms and a force constant of 1000 kJ mol -1 nm -2 .
- Unrestrained production run was set to 600 ns in the NPT ensemble.
- a temperature of 310 K was maintained using the velocity rescaling thermostat with additional stochastic term using a time constant of 1 ps.
- Test membranes [00144] Methods used for the test membrane study are, for example, as follows: A polysulfone (PSF) membrane substrate was prepared using a pilot-scale casting machine according to methods known in the art. To incorporate oligourea foldamers that act as artificial water channels (AWCs) into the polyamide selective layer of membranes, a spray-assisted interfacial polymerization (IP) technique was used. In brief, a substrate of 20 ⁇ 13 cm 2 was soaked in a 2% (w/v) m-phenylenediamine (MPD) solution for 2 minutes and the excess MPD was removed using an air knife.
- PSF polysulfone
- IP interfacial polymerization
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2017037150A1 (en) * | 2015-09-01 | 2017-03-09 | Centre National De La Recherche Scientifique (Cnrs) | Quaternary assemblies of water-soluble non-peptide helical foldamers, their use and production thereof |
| WO2017037142A1 (en) * | 2015-08-31 | 2017-03-09 | Centre National De La Recherche Scientifique (Cnrs) | Foldamer helix bundle-based molecular encapsulation |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2017037142A1 (en) * | 2015-08-31 | 2017-03-09 | Centre National De La Recherche Scientifique (Cnrs) | Foldamer helix bundle-based molecular encapsulation |
| WO2017037150A1 (en) * | 2015-09-01 | 2017-03-09 | Centre National De La Recherche Scientifique (Cnrs) | Quaternary assemblies of water-soluble non-peptide helical foldamers, their use and production thereof |
Non-Patent Citations (2)
| Title |
|---|
| DUTTA CHIRANJIT, KRISHNAMURTHY PANNAGA, SU DANDAN, YOO SUNG, COLLIE GAVIN, PASCO MORGANE, MARZINEK JAN, BOND PETER, VERMA CHANDRA,: "Nature-inspired synthetic oligourea foldamer channels allow water transport with high salt rejection", CHEM, CELL PRESS, vol. 9, no. 8, 10 August 2023 (2023-08-10), pages 2237 - 2254, XP009558699, ISSN: 2451-9308, DOI: 10.1016/j.chempr.2023.04.007 * |
| SU DAN-DAN, BARBOIU MIHAIL: "Artificial Water Channels—Progress Innovations and Prospects", CCS CHEMISTRY, vol. 5, no. 2, 1 February 2023 (2023-02-01), pages 279 - 291, XP093211134, ISSN: 2096-5745, DOI: 10.31635/ccschem.022.202202353 * |
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