WO2022104201A1 - Modified insecticidal proteins - Google Patents
Modified insecticidal proteins Download PDFInfo
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- WO2022104201A1 WO2022104201A1 PCT/US2021/059370 US2021059370W WO2022104201A1 WO 2022104201 A1 WO2022104201 A1 WO 2022104201A1 US 2021059370 W US2021059370 W US 2021059370W WO 2022104201 A1 WO2022104201 A1 WO 2022104201A1
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- protein
- modified
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- gut
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Classifications
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N63/00—Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
- A01N63/50—Isolated enzymes; Isolated proteins
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8286—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01P—BIOCIDAL, PEST REPELLANT, PEST ATTRACTANT OR PLANT GROWTH REGULATORY ACTIVITY OF CHEMICAL COMPOUNDS OR PREPARATIONS
- A01P7/00—Arthropodicides
- A01P7/04—Insecticides
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/32—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Bacillus (G)
- C07K14/325—Bacillus thuringiensis crystal peptides, i.e. delta-endotoxins
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A40/00—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
- Y02A40/10—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
- Y02A40/146—Genetically Modified [GMO] plants, e.g. transgenic plants
Definitions
- Stinkbugs are among the most important pests of global agriculture. These piercing-sucking insects impact 12 major agricultural crops across the globe 1, including cotton, soybean and maize 2,3 .
- Southern green stink bug Nezara viriduld
- the polyphagous habit of N. viriduld ⁇ ' 6 makes management of this species particularly problematic.
- stink bug management relies heavily on the application of chemical insecticides that lack target specificity, there remains a need in the art for the development of novel, environmentally friendly insecticide approaches
- a chimeric Nezara insecticidal protein comprising a toxic portion and at least one Nezara gut binding protein portion.
- Figure 1A is a gel showing that NvBPl binds a-amylase N4.
- 2D gel electrophoresis of 50pg BBMV, followed by ligand blot analysis with NvBPl -(AP)5-mCherry or (AP)5- mCherry (negative control) as ligand resulted in identification of a single protein spot.
- Representative ligand blots and a silver stained 2D gel are shown.
- M molecular mass markers.
- Figure IB is a gel showing peptide binding to N. viridula BBMV.
- Pull-down assays were conducted to assess the relative binding of peptide- (AP) 5 -mCherry (10 nM) to BBMV (lOpg).
- Western blots are shown beneath histograms of quantified band intensity for NvBPl and NvBP5, and for ABP5.
- ABP5 binding to BBMV was outcompeted by excess biotinylated synthetic peptide (1-1000 pM) indicating that ABP5 binding is specific.
- Negative controls used in these assays were (AP)5-mCherry (linker- mCherry), mCherry, and BBMV.
- Figure 2 depicts the modification of ARP 147 with Nezara viridula gut binding peptides.
- the protein structure generated by PyMOL The PyMOL Molecular Graphics System, Version 2.2 Schrodinger, LLC) with sites of modification indicated by arrows are shown.
- the protein was modified either by addition of peptide sequences to existing amino acid sequence, or by substitution of existing amino acids. Modifications made with NvBPl and ABP5 (a subset of sites modified with NvBPl) are shown. See accompanying table for specific details of peptide addition to ARP147.
- the 21 sites in ARP147 used for peptide addition are denoted in the construct name.
- a single amino acid e.g.
- AA8 indicates the ARP147 amino acid after which the 7 amino acid peptide was added.
- a peptide range e.g. AA19-25 indicates the ARP147 amino acids that were replaced. The amino acid sites highlighted in red were used for modification with both NvBPl and ABP5 peptides separately.
- Figure 3A provides graphs showing the relative binding of peptide-modified ARP147 to N. viridula BBMV. Pull-down assays were performed with native and peptide modified ARP147-MBP. Relative binding of ARP147-MBP modified with NvBPl or ABP5 is indicated by quantification of western blot band intensities. Data are representative of two biological replicate experiments.
- the Fnorm value (Base line corrected fluorescence value) is plotted on the Y-axis and ligand concentration on the X-axis.
- the Kd value is determined by the concentration of the ligand at which 50% of the target is bound to the ligand.
- the mean Kd values with binding curves are shown for NvBPl- and ABP5 - modified ARP147-MBP.
- Figure 4 provides graphs showing that gut binding peptides NvBPl and ABP5 increased ARP147-MBP toxicity against N. viridula nymphs.
- Membrane feeding assays with Img/ml ARP147-MBP in Lygus hesperus diet were conducted with 20 second instar N.
- viridula BBMV were screened for gut binding peptides followed by confirmation of binding to gut surface proteins to avoid the potential loss of phage on exposure to the diverse proteolytic enzymes present in the N. viridula gut and saliva 39 ’ 47 .
- stink bugs In contrast to other insects, stink bugs rely on a biphasic digestive process, with serine proteases active at alkaline pH released in the saliva, and cathepsins active at acidic pH prevalent in the gut, to ensure complete digestion of ingested materials 39 ’ 48 .
- N. viridula APN The appropriate APN contig from an N. viridula midgut transcript library 34 was identified based on the presence of conserved protein domains and a predicted GPI anchor 35 .
- Recombinant N. viridula APN was baculovirus expressed using pOET3 and Flashbac Ultra (Oxford Expression Technologies, Oxford, UK) in Sf9 and Sf21 cell monolayer cultures maintained in Sf900 SFMIII growth medium (Life Technologies/Thermo Fisher Scientific, Carlsbad, CA) at 27°C using standard procedures 36 , 37 . All protein concentrations reported herein were determined by Bradford assay (BioRad, Hercules, CA) using bovine serum albumin as a standard.
- Recombinant protein samples were analyzed with protein separation (10 pg per lane) in a 10 % SDS PAGE gel and proteins transferred to a PVDF membrane (Amersham Life Science, Little Chalfont, UK). The membrane was blocked with IX PBS 0.2% Tween 20 and 5% non-fat dry milk. Recombinant APN was detected with a V5 epitope polyclonal antibody (Rockland Immunochemicals Inc, Gilbertsville, PA; dilution 1:2,000) and an HRP-coupled secondary antibody (Thermo Fisher Scientific, Carlsbad, CA: dilution 1:5,000) followed by a chemiluminescent substrate (Pierce Thermo Scientific, Rockford, Illinois).
- BBMV 60pg/ml in TBS buffer with 0.1% Tween
- recombinant APN lOOpg/ml in TBS buffer with 0.1% Tween
- Sequences were analyzed with the Clustal Omega server, with grand average of hydropathy (GRAVY) score estimated and screened for unrelated-target binding using the Scanner And Reporter Of Target-Unrelated Peptides (SAROTUP) server.
- GRAVY grand average of hydropathy
- SAROTUP Scanner And Reporter Of Target-Unrelated Peptides
- Two peptides from the BBMV library screen (NvBPl and NvBP5) and five peptides from the APN library screen (ABP1-5) were selected.
- Peptide-linker-mCherry fusions were produced with the linker comprised of five alanine proline repeats (AP)5. Primer sequences are provided in Table 1.
- Peptide-(AP)5-mCherry constructs were cloned into pBAD/HisB (Invitrogen) and proteins expressed and purified as described by Chougule et al. 2013 41 .
- the NvBPl binding protein was identified by LC MS/MS and N-terminal sequencing.
- LC MS/MS protein identification the protein spot was manually excised from the 2D gel, reduced, alkylated and digested with trypsin using standard procedures. The generated peptides were then separated by LC MS/MS with the Q ExactiveTM Hybrid Quadrupole-Orbitrap Mass Spectrometer (Thermo Scientific).
- the translated Nezara viridula transcriptome 34 was used as reference to identify N. viridula proteins.
- the TMHMM Server v. 2.0 was used to predict the presence of transmembrane helices in candidate NvBPl binding proteins.
- N-terminal sequencing was performed after 2D gel electrophoresis and transfer of BBMV proteins to a PVDF membrane. N-terminal protein sequencing was carried out on proteins visualized by staining (Coomassie brilliant blue R250) by Edman degradation with a Perkin Elmer Applied Biosystems Model 494 Procise protein/peptide sequencer (Norwalk, CT) with an on-line Perkin Elmer Applied Biosystems Model 140C PTH Amino Acid Analyzer.
- the pellet was resuspended with 100 pL of binding solution and centrifugation repeated three times. Finally, the resulting pellet was resuspended in 10 pL binding solution and analyzed by western blot. Proteins were resolved in a 10% SDS PAGE gel and transferred to PVDF membrane (Amersham). The membrane was blocked with IX PBS 0.2% Tween 20 and 5% non-fat dry milk. The peptide fusion was detected using an mCherry polyclonal antibody (Thermo Scientific, dilution 1:5000) and a secondary HRP coupled antibody (Thermo Scientific, dilution 1:5000) followed by a chemiluminescent substrate (Pierce Thermo Scientific).
- the peptide mCherry fusion proteins were incubated with or without excess peptide (biotinylated, 0.1 pM to lOOOpM) with BBMV derived from second instar nymphs, and the pull-down assay continued as described above.
- ARP 147 is an ETX/Mtx2 pesticidal protein that shares 24% amino acid identity to the P pore-forming E-toxin from Clostridium perfringens.
- the predicted structure of ARP147 was modeled by I-TASSER. Sites for introduction of peptides NvBPl or ABP5 by addition to- or replacement of-existing sequence were selected on the basis of homology modeling, in silico protein stability and peptide exposure on the surface of the protein. Sequences for the modified ARP147 constructs were synthesized by GenScript for expression as HisMBP fusion proteins in pMal-c2X (New England
- a Monolith NT 115 (NanoTemper, Cambridge, MA) was used to determine the binding affinity between 1) ARP147-MBP modified with NvBPl and BBMV, and 2) ARP147-MBP modified with ABP5 and recombinant N. viridula APN.
- the native and modified ARP147-MBP ( ⁇ 75kDa) were labeled using the Monolith Protein Eabeling Kit RED-NHS 2 nd Generation (Amine Reactive) according to the manufacturer’s directions and aliquoted in 20 pl or smaller volumes in Corning Costar low binding microcentrifuge tubes.
- the Monolith NT115 series premium capillaries were dipped into the final mix, and arranged in the order of high to low ligand concentrations in the capillary stand, which was then inserted into the Monolith NT115. Readings were taken for the AF norm.
- the normalized fluorescence (Fnorm) for each data point represented by the interaction between fluorescent-labeled target molecule (ARP147-MBP constructs) at a particular concentration with a range of concentrations of unlabeled ligand (BBMV or APN) was plotted into a sigmoid curve to obtain the Kd value, where half of the target molecules are in a bound state.
- Response amplitude and the signal to noise ratios were used as measures of quality control.
- Three biological replicates were performed for selected modified toxins.
- the purified toxins (Img in 1ml for the six selected constructs) were mixed with Lygus hesperus artificial diet (Frontier Scientific Services Inc, Newark, Delaware, US) supplemented with 150 pl of streptomycin (500 pg/ml) and 35 pl of Nystatin (50 mg/ml) poured into diet packets made with parafilm.
- the assay was conducted with four biological replicates of twenty 2 nd instar nymphs. Insect mortality was recorded daily for 7 days. Statistical differences between modified and wild type constructs were determined by Student’s t-test.
- Aminopeptidase N was identified from Contig 9840 from the N. viridula transcriptome 34. Recombinant N. viridula APN was expressed in Sf21 cells using the baculovirus expression system, and affinity purified . Five peptides (ABP1-5) were selected following phage display library screening for phage encoding peptides that bind recombinant N. viridula APN (ABP1-5 are set forth in SEQ ID NOs: 3-7, respectively). ABP5 (SEQ ID NO: 7) was the most hydrophilic of the seven peptides assessed.
- Example 2 - NvBPl binds to N. viridula a-amylase
- NvBPl-(AP)5-mCherry binds a ⁇ 50 kDa protein with a pl of 6 that was absent from the negative control blot with (AP)5-mCherry as ligand ( Figure 1A). While four candidate binding proteins were identified by LC-MS/MS with reference to the translated N. viridula gut transcriptome, the approximate pl (5.62 and 6.02) and molecular mass of proteins encoded by two contigs, 9247 (56 kDa) and 10931 (60 kDa), correlated with the protein observed in the ligand blot.
- Alphaamylase N4 on the surface of the N. viridula gut epithelium is the binding partner of NvBPl based on localization (transmembrane helix from Y 13 to A35) and the N-terminal sequence of DTIXN (SEQ ID NO: 8). Ligand blot results also indicate that the binding of NvBPl is specific.
- a homology model based on Mpp51Aal was used for selection of sites for peptide modification. As there was little information on domains of ETX/Mtx2 proteins that are important for toxicity, a wide range of sites including alpha helices, beta sheets and loop regions that are predicted to be on the exterior of ARP147 were selected for modification. The sites and the mode of peptide addition (addition to- or substitution of- existing sequence), were selected on the basis of modeling with 1) the peptide predicted to be displayed on the surface of ARP 147 rather than folded in, and 2) the stability of the predicted modified structure.
- NvBPl was incorporated into eight sites in ARP147 by addition- and into 13 sites by substitution- of existing amino acid sequences, resulting in a total of 21 constructs ( Figure 2). All 21 NvBPl -modified ARP147-MBP expressed stably in E. coli (data not shown). Based on data generated from initial bioassays with all 21 constructs (not shown), a subset of six NvBPl -modified constructs was selected for further analysis.
- binding affinity (Kd) values for binding of selected ARP147-MBP modified with NvBPl or ABP5 to BBMV or recombinant N. viridula APN, respectively were determined by MST.
- the average Kd for NvBPl -modified ARP147-MBP AA207-214 was 139 nM compared to 222 nM for unmodified, indicating increased binding of this modified protein to BBMV ( Figure 3B).
- binding of NvBPl constructs 43 and 70-76 decreased relative to native consistent with pull-down assay results.
- Crystal structure of Cry51Aal A potential novel insecticidal aerolysin-type beta-pore-forming toxin from Bacillus thuringiensis. (1090-2104 (Electronic)). Gassmann et al., Proceedings of the National Academy of Sciences 111(14):5141 (2014). Blanco et al., Journal of Economic Entomology 102(l):381-7 (2009). Chougule NP and Bonning BC. Toxins for transgenic resistance to hemipteran pests. (2072-6651 (Electronic)
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Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US18/253,010 US20240090511A1 (en) | 2020-11-16 | 2021-11-15 | Modified Insecticidal Proteins |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US202063114278P | 2020-11-16 | 2020-11-16 | |
| US63/114,278 | 2020-11-16 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO2022104201A1 true WO2022104201A1 (en) | 2022-05-19 |
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US2021/059370 Ceased WO2022104201A1 (en) | 2020-11-16 | 2021-11-15 | Modified insecticidal proteins |
Country Status (2)
| Country | Link |
|---|---|
| US (1) | US20240090511A1 (en) |
| WO (1) | WO2022104201A1 (en) |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20130097729A1 (en) * | 2011-06-08 | 2013-04-18 | Bryony Claire Bonning | Aphicidal Toxins and Methods |
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- 2021-11-15 US US18/253,010 patent/US20240090511A1/en active Pending
- 2021-11-15 WO PCT/US2021/059370 patent/WO2022104201A1/en not_active Ceased
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20130097729A1 (en) * | 2011-06-08 | 2013-04-18 | Bryony Claire Bonning | Aphicidal Toxins and Methods |
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