WO2022034601A1 - Poct device to detect cervical cancer specific biomarker - Google Patents

Poct device to detect cervical cancer specific biomarker Download PDF

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Publication number
WO2022034601A1
WO2022034601A1 PCT/IN2020/051023 IN2020051023W WO2022034601A1 WO 2022034601 A1 WO2022034601 A1 WO 2022034601A1 IN 2020051023 W IN2020051023 W IN 2020051023W WO 2022034601 A1 WO2022034601 A1 WO 2022034601A1
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WIPO (PCT)
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biomarker
cervical cancer
ncb
gold nanoparticles
antibody
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French (fr)
Inventor
Mitali Basak
Shirsendu Mitra
Ankita Jain
Saurabh Kumar Agnihotri
Akanksha Vyas
Madan Lal BRAHMA BHATT
Rekha Sachan
Surjendu MAITY
Nayanjyoti Kakati
Monika Sachdev
Dipankar BANDYOPADHYAY
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Council of Scientific and Industrial Research
Indian Institute of Technology Guwahati
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Council of Scientific and Industrial Research
Indian Institute of Technology Guwahati
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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/575—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/5755—Immunoassay; Biospecific binding assay; Materials therefor for cancer of the uterine cervix, uterine corpus or endometrium
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/575—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/5758—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumours, cancers or neoplasias, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides or metabolites

Definitions

  • Present invention provides a biomarker sensor for sensing cervical cancer specific biom arker. More specifically, the said sensor com prises gold nanoparticles with capture molecule im mobilized thereon exhibiting Localized Surface Plasmon Resonance (LSPR) for target protein, Protein Phosphatase- 1 gam ma-2 (PP1 Y2) , a novel cancer biomarker (NCB) .
  • LSPR Localized Surface Plasmon Resonance
  • PP1 Y2 Protein Phosphatase- 1 gam ma-2
  • NCB novel cancer biomarker
  • Present invention discloses a non-invasive point-of-care-testing (POCT) device facilitating biomarker based cervical cancer detection system comprising of a cervical cancer marker PP1 Y2, present in the urine sample of the patients suffering from cervical cancer.
  • the said device employs colorimetric principles for the detection of the said marker in human urine, thus finds application in rapid and painless POCT diagnosis of cervical cancer.
  • cervical cancer is the fourth most widely affected cancer type among women (Arbyn et al., "Estimates of incidence and mortality of cervical cancer in 2018: a worldwide analysis” , The Lancet Global Health 8 , e191 ; 2020) and is am ong the leading causes of malignancy of the tumors present in the fem ale reproductive system .
  • HPV Human Papillom avirus
  • stage I cervical cancer patients The objective is to identify the disease in the precancerous stage or at the early stage of the development of cervical cancer. It is found that the five-year survival rate for stage I cervical cancer patients is around 54% , which reduces to 40% for stage I I cervical cancer patients and drops to around 18% for stage I I I and stage IV patients, respectively (N. A. Razak, "Estimating the five-year survival of cervical cancer patients treated in Hospital Universiti Sains Malaysia", Asian Pacific Journal of Cancer Prevention 14, 825; 2013) .
  • Pap smear is used to screen for CIN, HPV/Pap co-testing (Hutchinson et aL, "Utility of liquid-based cytology for cervical carcinoma screening: results of a population-based study conducted in a region of Costa Rica with a high incidence of cervical carcinoma", Cancer Cytopathology : I specialized I nternational Journal of the American Cancer Society 87, 48; 1999) where the collected cell samples are monitored for high-risk HPV types and cervical cell changes, and visual inspection after application of acetic acid (VIA) or Lugol’s iodine (VI LI) in the cervical region which stains the cancer affected cells in the cervical region
  • cervical cells are collected from the cervix using a swab such as wooden or plastic scraper and/or cervical brush and are stored in a liquid preservative vial for further examination for the presence of any HPV infection or cervical cell changes using Pap cytology test (Duraisamy et aL, "Methods of detecting cervical cancer", Advances in Biological Research 5, 226; 201 1 ) .
  • An abnormal Pap smear result is trailed by colposcopic examination, biopsy and histological confirmation of the results (The Lancet 370, 890; 2007) .
  • the whole procedure is not only tiresome for the patient but also necessitates well- trained health care professionals for monitoring the results accurately, which may vary even in experts’ hands.
  • 20050186215A1 identified a human gene, CUDR, in cancer cells.
  • CUDR human gene
  • U.S. Patent No. 6,709,832 reported another cell cycle regulatory protein, p1 Q INK4a t as a potential biomarker for cervical cancer, which is overexpressed in biopsies of cervical dysplastic cells from CI N I , I I , I I I and even more significant in invasive carcinomas.
  • p Q INK4a as a diagnosis tool for the detection of cervical cancer from the solubilized cervical samples collected from the cervix of the affected patients.
  • p16 /WK4/l is the lone protein, which is the only combitally available biomarker for cervical cancer.
  • Patent No. 8,900,813 authors have claimed the discovery of CI P2A as a positive biomarker for the detection of cervical cancer. It is reported that either CI P2A m RNA or Cl P2A protein or both can be used with at least one additional biomarker such as MCM2, MCM5, p14 /lRF ' and p1 6 /WK4a to serve better as a detection tool for cervical cancer.
  • the present invention claim s for the advancement involving a potential and particular biom arker PP1 Y2, secreted from the cervical dysplasia and neoplasia tissues as an NCB for the detection of cervical cancer (Chakrabarti et al., "Protein phosphatase PP1 y2 in sperm m orphogenesis and epididym al initiation of sperm motility" , Asian journal of andrology 9 , 445; 2007) .
  • the said biom arker also appears in the urine of the affected patients, and hence elim inates the need for the scrapping of cervical tissues for exam ination. It has been observed through exam inations that the mentioned protein is detected in precancerous as well as all the cancerous stages of Cervical Cancer, irrespective of the stage of cancerous lesions. However, the concentration varies with stages of cancer growth.
  • This invention also states the development of a point-of-care-testing (POCT) device, which will surely transform the screening process for cervical cancer from tedious and highly invasive procedure to effortless and painless practice.
  • POCT devices have gained enormous ous popularity and have occupied a significant sector of the medical field, due to its advantages of in situ monitoring of health, reliability, realtime results, portability, and econom ic values (Luppa et al., "Point-of-care testing (POCT) : Current techniques and future perspectives", TrAC Trends in Analytical Chemistry 30 , 887; 201 1 ) .
  • biosensors There are a variety of commercially available biosensors categorized on the basis of the signal transduction technologies like optical (Damborsky et aL, "Optical biosensors", Essays in biochemistry 60, 91 ; 2016) , electrochemical (U.S. Patent No. 5776324A) , thermometric (Ramanathan et aL, “Principles and applications of thermal biosensors", Biosensors and Bioelectronics 16 , 417;2001 ) , piezoelectric (P. Skladal, “Piezoelectric biosensors", TrAC Trends in Analytical Chemistry 79 , 127 , 2016) or magnetic (J. B.
  • An optical biosensor system is a sensitive analytical device consisting of a bio recognition sensing element, such as enzyme, antibody, antigen, receptor, nucleic acids, whole cells or tissues, integrated with an optical transducer element aimed to produce signals proportionate to the concentration of the analyte.
  • bio recognition sensing element such as enzyme, antibody, antigen, receptor, nucleic acids, whole cells or tissues
  • optical transducer element aimed to produce signals proportionate to the concentration of the analyte.
  • the imm unosensors (La et aL, "Im munosensing using nanoparticles", Materials today 13 , 24;2010) exploiting the colorimetric sensing capacities are considered as the most consistent technique for the quantitative analysis of biomarkers present in various biological fluids owing to its nature of specific lock and key interaction between the sensor material and the analyte form ing a visual color change on reaction.
  • Optical transduction of the colorimetric sensor responses can be analyzed with a number of spectroscopic techniques.
  • the binding event between the capture molecule and the target can be optically observed by labeling the capture molecule with a tag for such as florescent tag as in Enzyme Linked I mm unosorbent Assay (ELISA) used for fluorescent spectroscopy (Tian et aL, "A copper based enzyme-free fluorescence ELISA for HER2 detection", Journal of imm unological methods 451 , 78;2017) or Raman tag for Raman spectroscopy (Zong et aL, “Surface-enhanced Raman spectroscopy for bioanalysis: reliability and challenges," Chemical reviews 1 1 8 , 4946;2018) .
  • ELISA Enzyme Linked I mm unosorbent Assay
  • label-free assays are more advantageous for real time analysis, providing improved performance and sensitivity, and can also be used for biomolecular interaction analysis.
  • One such improved and label free transducer is metal nanoparticle. These are used as a tool to monitor binding events through a phenomenon known as Localized Surface Plasmon Resonance (LSPR) (Zhou et aL, "The analysis of nobel metal nanoparticles LSPR phenomena", Chinese Journal of Sensors and Actuators 5 , 007;2010) .
  • LSPR Localized Surface Plasmon Resonance
  • nanoparticles such as gold, silver, copper, and among others have provided a proficient sensing probe for targeted therapy (Tiwari et aL, "Functionalized gold nanoparticles and their biomedical applications", Nanomaterials 1 , 31 ;201 1 ) .
  • the basic rationale is that the nanometer-sized-particles have larger surface to volume ratio which provides improved conjugation sites for multiple diagnostic and therapeutic agents over bulk materials. This improvement in the structural and functional properties has not only m iniaturized the analyte volume required for the detection but also has provided scope for the economic portable devices.
  • these metal nanoparticles are capable of showing LSPR property, which shows specific sharp spectral absorbance peaks owing to the attachment of the biomolecules and produces explicit electromagnetic near-field shifts with the change in the local refractive index in the surrounding of the nanoparticle (Zhou et aL, "The analysis of nobel metal nanoparticles LSPR phenomena", Chinese Journal of Sensors and Actuators 5, 007;2010) .
  • This property of the LSPR phenomenon is exploited to determine the concentration of the particular target in the complex medium .
  • One of the basic objects of the present invention is to provide sensing of cervical cancer specific to bio-marker NCB (PP1Y2), wherein the over expression of the said protein strongly indicates the occurrence of cervical cancer in females.
  • Another object of the present invention is to measure the appearance of the said biomarker in urine of the subjects non-invasively.
  • a further object of the present invention is to provide antibodies against the NCB wherein the said antibody when used in Western Blot (WB) assay detects expression level of NCB.
  • Yet another object of the present invention provides a sensor comprising a colloidal solution of surface modified metal nanoparticles imparting LSPR property.
  • Still another object of the present invention provides surface modified metal nanoparticles by capping the surface of the nanoparticles with a chem ical linker substance, which preferentially attract the specific capture molecules, antibodies, in subsequent addition.
  • Another object of the present invention is to provide a simple, non- invasive and user-friendly point of care testing (POCT) device for early and real time identification of the targeted protein biomarker for early detection of cervical cancers.
  • POCT point of care testing
  • the basic aspect of the present invention is to provide a biomarker sensor for specific sensing of cervical cancer comprising gold nanoparticles with capture molecules im mobilized thereon exhibiting LSPR for targeted PP1 Y2 biomarker.
  • the present invention provides a biomarker sensor comprising said anti-PPl Y2 biomarker antibody, which is specific towards the target PP1 Y2 biomarker, required to be detected in any biological fluid-based analyte including urine samples, as the said capture molecule which is linked and immobilized on said gold nanoparticle.
  • a further aspect of the present invention is to provide a biomarker sensor wherein said PP1 Y2 biomarker antibody as capture molecule is linked and immobilized on said gold nanoparticle involving antibody to gold nanoparticle linkers preferably 3 ,3' - Dit h iod ipropion ic acid di(N- hydroxysuccinim ide ester) DTSP, 1 -Ethyl-3-(3-dimethylamino propyl)carbodiim ide (EDC)/N-hydroxysuccinimide EDC/NHS, cystemine, 3,3-Dithio- bis-(sulfosuccinimidyl)propionate (DSP) , 3,3' -Dithiobis (sulfosuccinim idyl propionate) (DTSSP) and the like.
  • said PP1 Y2 biomarker antibody as capture molecule is linked and immobilized on said gold nanoparticle involving antibody to gold nanop
  • the present invention provides the biomarker sensor comprising load of said PP1 Y2 biomarker antibody as capture molecule on said DTSP attached gold nanoparticles is in proportions of 60 pL to 1 .5 m l, respectively.
  • the present invention provides the biomarker sensor wherein said gold nanoparticles comprises nanoparticles of ⁇ 5 nm to ⁇ 10 nm in diameter having wine red color.
  • the present invention provides a non-invasive and point of care testing (POCT) facilitating biomarker based cervical cancer detection system comprising: i) an optical source; ii) a sample stage including biomarker sensor comprising gold nanoparticles with capture molecules im mobilized thereon adapted for exhibiting LSPR for targeting PP1 Y2 biomarker in the analyte through LSPR based target biomarker detection; iii) a signal processor means including an optical detector.
  • POCT non-invasive and point of care testing
  • a further aspect of the present invention provides a non-invasive and point of care testing (POCT) facilitating biomarker based cervical cancer detection system comprising of said biomarker sensor specific towards the target PP1 Y2 biomarker required to be detected in any biological fluid based analyte preferably in urine samples including said gold nanoparticles of ⁇ 5 nm to ⁇ 10 nm in diameter having said capture molecule comprising anti-PPl Y2 biomarker antibody and wherein said chem ical linker to stably immobilize said capture molecule is selected from DTSP, EDC/NHS, cystem ine, DSP, DTSSP preferably DTSP.
  • POCT non-invasive and point of care testing
  • Yet another aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system which is configured to allow said biomarker present in analyte/urine sample and the antibody immobilized on gold nanoparticles interaction and generation of output signals confirm ing LSPR intensity variation based thereon.
  • POCT point of care testing
  • a still further aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection
  • said optical source such as a light emitting diode (LED) having narrow wavelength between ⁇ 515 nm and ⁇ 540 nm
  • said optical detector which is including a silicon photodiode capable of sensing in the visible light wavelength range and capturing the variation in the transmitted light intensity compatible to the signal processing unit, with said sample stage including a cuvette, placed in between said the optical source and the said optical detector including photodetector, and wherein said signal processor means including transmission intensity based generation of calibration plot and diagnosis of the unknown samples.
  • the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system
  • POCT point of care testing
  • an optoelectronic device including: an optical transduction set up comprising optical source housing for LSPR optical source preferably LED, an optical detector preferably a silicon photo detector with said sample stage including a glass cuvette placed in between said optical source and the said photodetector, said signal processing means operatively connected to display, means for detection purposes.
  • a further aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system wherein the optical source illum inates the sensing material held by the glass cuvette, and the output transm itted signal is collected by the photodetector arranged in the apparatus set; said signal processing means comprises of a m icrocontroller for processing incoming transmitted analog signals from the photodetector to convert it into digital signals for subsequent display, wherein display means for easy end user detection, said m icrocontroller com manded with pre-loaded calibrated data of various concentration of the protein to be identified, to enable measuring of the correct level of the protein of interest present in the analyte examined.
  • POCT non-invasive and point of care testing
  • a still further aspect of the present invention provides a process for the manufacture of the biomarker sensor for specific sensing of cervical cancer comprising: i) providing gold nanoparticles in the range of ⁇ 5 nm to ⁇ 10 nm ; ii) involving solution of the chem ical linker to generate chemically linked gold nanoparticles; iii) adding selectively 60 pL to 1 .5 m L of anti-NCB antibody solution to the DTSP linked gold nanoparticles to thereby provide the gold nanoparticles with said anti-NCB antibody capture molecules immobilized thereon capable of exhibiting LSPR for target PP1 Y2 biomarker.
  • Figure 1 Depicts gel showing the expression of NCB transcript in the cervico-vaginal fluid collected from clinically confirmed subjects of cervical cancer and precancerous stages. -actin served as internal control for the reaction.
  • Figure 2 Depicts I mmunofluorescence micrograph showing signal of NCB in the cells of the cervico-vaginal fluid collected from the clinically confirmed cervical cancer patients.
  • Figure 3 Depicts photo-micrograph showing co-expression of NCB and HPV in the cervico-vaginal fluid collected from early and advanced stages of cervical cancer patients. Red fluorescence depicts NCB while green shows HPV signal in the specimen. DAPI is showing blue staining for the nucleus of the cells.
  • Figure 4 Depicts comparison of total secreted protein and detection of NCB in the urine samples of healthy, unhealthy females as well as cervical cancer patients, (a) Coomassie staining of gel shows separated urine proteins through SDS-PAGE. (b) Ponceau staining of blot shows blotted protein profile of various urine samples, (c) Western blot shows the shedding of NCB antigen in cervical cancer patients’ urine.
  • P1 recurrence of cervical cancer
  • P2 cervical cancer stage I I I B
  • UH Unhealthy with abnormal pap but noncancerous cervix
  • F1 & F2 Healthy female urine sample.
  • Figure 5 Depicts the detection of NCB in the urine samples collected from precancerous as well as various stages and groups of cervical cancer, (a) Ponceau staining of blots shows the protein profile of various urine sam ples, (b) Western blot analysis shows the shedding of NCB antigen in urine, where Lane 1 to 5 CaCx: Different stages of cervical cancer; Lane 5 & 6 Rec: Recurrence cases of cervical cancer; Lane 8 & 9 Tre: Follow-up under treatment patients; Lane 10 to 14 CI N: Different CI N stages; Lane 1 5 andf 16 UH: abnormal pap and unhealthy but noncancerous cervix.
  • Figure 6 Shows the dimensional geometry of 3D printed device, (a) shows (i) I sometric (ii) Front (iii) Bottom (iv) Left (v) Right (vi) Top view of the 3D printed ndevice ( 1 00) . (b) shows (i) Isometric (ii) Front (iii) Top (iv) Bottom (v) Left (vi) Right view of the cuvette housing ( 101 ) part of the 3D printed device, (c) shows (i) I sometric (ii) Left (iii) Right view of the LED housing ( 1 02) part of the 3D printed device and the schem atic diagram of the LED ( 103) .
  • (d) shows (i) I sometric (ii) Left (iii) Right (iv) Top view of the photodetector casing ( 104) part of the 3D printed device and the schem atic representation of the photodetector, TSL2561 ( 105) .
  • (e) shows (i) I som etric (ii) Bottom (iii) Top view of the cover of the cuvette ( 1 06) .
  • Figure 7 Depicts the UV-Visible spectroscopy results for (a) pristine gold nanoparticles (AuNPs - brown dashed line) , AuNPs after DTSP attachment (solid traffic green line) , Antibody (Ab) attached DTSP linked AuNPs (blue square symbols) , and after Antigen (Ag) attachment (protein separated from cervical cancer patients’ urine) on Ab linked on the AuNPs (pink dash-dot line) , (b) pristine AuNPs (blue dashed line) , DTSP linked AuNPs (traffic green dash-dot line) , Ab attached DTSP linked AuNPs (red triangular symbols) , and after Ag attachment (urine sample) on Ab-AuNPs composite (violet dash-dot-dot line) , (c) shows change of UV-Vis absorbance intensity along with gradual blue shifts of spectra on successive additions of urine with respect to Ab stabilized on DTSP linked AuNP
  • FIG. 8 Depicts the results of the interference study.
  • Plot (a) shows UV- Vis spectra of AuNPs (black line with red box) , DTSP immobilized AuNPs (solid light green line) , Ab stabilized AuNPs (blue triangular symbols only) , and on addition of increasing amounts of cervical cancer patient’s urine sample (other lines after blue triangular symbols) to Ab stabilized AuNPs.
  • Plot (b) shows UV-Vis spectra of DTSP im mobilized AuNPs (solid light green line) , Ab stabilized AuNPs (blue triangular symbols only) , and on the addition of different amounts of healthy urine sample (other lines after blue triangular symbols) to Ab stabilized AuNPs.
  • Plot (c) shows the UV-Vis response of Ab im mobilized AuNPs (blue triangular symbols only) on addition of different amounts of healthy patient’s urine sample (lines below the blue triangular symbols) , initially, and on subsequent addition of increasing amounts of cervical cancer patient’s urine sample (lines above the blue triangular symbols) in comparison to DTSP immobilized AuNPs (solid light green line) , and Ab stabilized AuNPs (blue triangular symbols only) .
  • Figure 9 Depicts the change in intensity and wavelength shift obtained from UV-Visible spectroscopic analysis of ten affected patients’ urine samples.
  • Plot (a) shows the hypsochromic shift of the UV-Vis spectra observed after the addition of ten different cervical cancer affected patients urine samples to the Ab stabilized AuNPs solution.
  • Plot (b) shows the normalized intensity of absorbance of the UV-Vis spectra observed after the addition of ten different cervical cancer affected patients’ urine samples to the Ab stabilized AuNPs solution.
  • FIG. 10 Shows the circuit diagram of the electronic transducing set up.
  • the image shows a microcontroller (Arduino Uno R3, ATmega328p) at the center, to the right of which, is a resistor (R) of 1 k and an LED (D) .
  • a microcontroller Arduino Uno R3, ATmega328p
  • R resistor
  • D LED
  • TTL2561 photodetector
  • OLED display
  • Figure 1 Depicts Mass spectrometry analysis showing the purity and integrity of NCB synthetic peptide of 23 am ino acids (Mol wt ⁇ 2.5 kDa) .
  • Figure 12 Depicts the calibration curve obtained from the developed portable POCT device for cervical cancer detection.
  • the present invention thus discloses a biomarker sensor for specific sensing of cervical cancer and a non-invasive, POCT device facilitating biomarker based cervical cancer detection system .
  • the said system involves identification of cervical cancer biomarker, ( PP1Y2) , from the urine sample of a patient.
  • the said system is based on the detection of the intensity change due to the variation in the refractive index at the surface of a Localized Surface Plasmon Resonance (LSPR) system owing to lock-and-key interaction of antibody and antigen.
  • LSPR Localized Surface Plasmon Resonance
  • the present invention also claims the development of a POCT system comprising one optical source, one photodetector, and metal nanoparticle-based sensor.
  • the said system comprises of an LSPR optical source, a dedicated photodetector and a geometrically confined cuvette placed in between the LSPR optical source and the photodetector.
  • the cuvette is filled with the synthesized sensor material for the LSPR detection of the said target protein.
  • the sensor comprises the colloidal solution of modified metal nanoparticles, particularly for the detection of the targeted protein biomarker.
  • biological sample is a body sample that can be used as an analyte to detect various biomarkers of certain diseases.
  • a biological sample includes, but is not lim ited to, urine sample, cervical tissues, cervical sections, or biopsies of the cervix.
  • cervical cancer refers to the development of neoplasia or the abnormal growth of a mass of carcinogenic tissues in the cervix or cervical regions of a female.
  • biomarker refers to the naturally occurring molecule or gene or any characteristic by which a particular disease or pathological imbalance can be measured.
  • cervix refers to the lower region of the uterus of a female reproductive system which encompasses uterine cervix, endocervix, and ectocervix.
  • the term ‘cervico-vaginal fluid’ means the fluid collected from the excretion of the cervical tissues of a female.
  • the term ‘antibody” refers to the protective protein formed by the immune system of the body in response to any invasion from foreign body known as an antigen.
  • protein refers to a chain of am ino acids.
  • LED refers to light-emitting diode, which is an LSPR optical source used in the developed apparatus.
  • photodiode refers to an optical detector, which changes its electrical properties when exposed to a light source.
  • cuvette refers to a container made up of a transparent material such as glass, used in the developed apparatus to hold the sensing material.
  • POCT refers to the reported point of care testing device, which is portable in nature and is aimed to provide easy and real time diagnosis of the disease.
  • PP1 Y2 as a novel biomarker for the diagnosis of cervical cancer.
  • a number of results generated in line with the clinically verified healthy and cervical cancer affected subjects have revealed that the expression level of PP1 Y2 increases in all cases of cervical neoplasia.
  • the increased expression level of PP1 Y2 was also found throughout various stages of cancer of the cervix.
  • the expression of the reported NCB was verified in the cervico-vagmal fluid (CVF) samples collected from clinically confirmed cervical cancer patients affected with various stages of cervical cancer.
  • CVF cervico-vagmal fluid
  • RT-PCR reverse transcriptase polymerase chain reaction
  • Figure 1 shows the results of RT-PCR.
  • the expression of NCB-PP1 Y2 was also validated in CVF samples of the patients having unhealthy but noncancerous cervix and also in the cases of patients showing recurrence of cervical cancer.
  • the RT-PCR results of such cases show a dim inished intensity of the bands as compared to the intensity of the bands obtained for various stages of cervical cancer cases.
  • I F I m munofluorescence
  • NCB was tested for the CVF samples, which were clinically confirmed for the presence of HPV infection.
  • Co- imm uno localization of NCB and HPV for various stages of cervical cancer patients was done using dual im munostaining technique, as shown in Figure 3.
  • the results show positive im m uno-staining for both NCB and HPV in the collected CVF samples, indicated by red and green stain, respectively in the figure shown and blue is nucleus stained with DAPI . Therefore, it can be concluded that the reported NCB is expressed in all the cases where HPV infection was clinically confirmed.
  • Present invention is related to the detection of the NCB, PP1 Y2, in the urine samples of cervical cancer patients.
  • urine samples were collected from different stages of clinically confirmed cervical cancer patients.
  • Urine samples were also collected from patients having abnormal but noncancerous cervix and the patients showing recurrence of the disease.
  • Two healthy individuals were also tested for the existence of NCB in the respective urine samples. The results of the testing are shown in Figure 4.
  • Overall level of secretary proteins was negligible in healthy individuals as evident from coomassie and ponceau staining shown in Figure 4(a) and Figure 4( b) , respectively.
  • No detectable signal of bands corresponding to NCB could have been observed in case of healthy volunteers whereas very intense bands were observed in cervical cancer patients when probed with anti-NCB specific antibodies. This data indicated that the anti-NCB antibody is specific to the claimed NCB and the Western Blot technique is efficient for the identification of the discovered protein.
  • the expression of the said NCB was exam ined in the urine samples of a number of subjects using the Western Blot technique, as shown in Figure 5.
  • the results obtained from the Western Blot technique shows that the said NCB is found in all the clinically confirmed cervical cancer cases. It also shows that high-intensity bands were obtained for different stages of cervical cancer patients as compared to the intensity of the bands obtained for different CI N stages, patients showing recurrence of the disease, and also for the patients having unhealthy but noncancerous cervix.
  • the above results show that the NCB is a potential biomarker for the early identification of precancerous and cervical cancer cases from the urine samples of the subjects.
  • Figure 6(a) ( i-vi) refers to the developed three-dimensional (3D) apparatus for the detection/quantification system for cervical cancer diagnosis.
  • the sensing system ( 100) is made up of a reusable 3D printed apparatus.
  • Figure 6( b) ( i-vi) shows a housing ( 101 ) placed at the m iddle of the 3D printed set up ( 100) to hold the cuvette.
  • Figure 6(c) ( i-iii) shows an optical source chamber ( 102) of the 3D printed set up ( 100) , to place the Light Emitting Diode (LED) ( 103) .
  • LED Light Emitting Diode
  • Figure 6(d) ( i- iii) an optical detector chamber ( 104) at the other end of the 3D printed set up ( 100) , to house the photodetector ( 105) .
  • Figure 6(e) ( i-iii) shows the cuvette cover ( 106) used for capping the cuvette to minim ize the interference of undesired external light.
  • the transducing system composes a central processing unit, which contains a microcontroller, accessory units like resistor, and a digital user interface.
  • the optical source, photodetector unit, m icrocontroller, and the display can be electrically powered either by a portable rechargeable battery, low voltage power outlet system , or a combination of both.
  • the optical source can be a simple LED, or a controlled high-power laser, or any other suitable light source.
  • the optical detector unit is any visible range photodetector module such as silicon photodiodes.
  • the digital user interface unit can be any available display for example a Liquid Crystal Display, or an Organic Light Em itting Diode (OLED) display.
  • the reagent which is a suitable solution containing antibodies specific to NCB is taken into the cuvette.
  • the chosen cuvette is of standard dimensions (1 cm x 1 cm) .
  • the test sample either a solution containing the required antigen or urine sample collected from the patients’ having cervical cancer, is dropped to the cuvette externally by some suitable quantifiable transfer unit such as a m icropipette, or a graduated dropper.
  • the analyte solution or the urine sample should be mixed well before use to confirm the homogeneity of the solution. After pouring the sample into the cuvette, it can directly be placed in the 3D printed housing.
  • the light source and the microprocessor board can be turned on using a suitable power delivery source, as mentioned previously and the cuvette is covered with the cuvette cover mentioned.
  • the said device works on the transm ission mode. Hence, the light com ing out of the light source can directly be passed through the cuvette containing the material to be sensed, and during the passage, a fraction of the incom ing light is expected to be absorbed by the solution inside the cuvette.
  • the extent of absorption would proportionally vary with the concentration of the targeted NCB present in the analyte used.
  • the light left out after the absorption is to fall on the photodetector, fixed at the other end of the developed 3D printed device.
  • the amount of light falling on the detector can be digitally read with the help of a m icrocontroller-based central processing unit.
  • programm ing can be set into the microcontroller to digitally process the incom ing light intensity data into the corresponding concentration of the target protein present in the analyte used.
  • a number of known concentrations or volume of test samples has been tested with the fabricated device to generate a calibration curve for the quantitative estimation of the test sample.
  • the reagent that is used for the LSPR based sensing is made of metal nanoparticles such as gold with the subsequent attachment of specific anti-NCB antibody by any chem ical or physical attachment procedures.
  • the metal nanoparticles solution is prepared from a precursor salt.
  • the precursor salt is advised to dissolve in Milli-Q water to prepare a relatively low and suitable concentration.
  • a suitable reducing agent such as Sodium Borohydride or Trisodium citrate can be used to synthesize metal nanoparticles from the precursor solution.
  • the synthesis should be done under constant stirring with a suitable stirring rate to control the size of the synthesized metal nanoparticles. Optim ization of synthesis parameters is required for synthesizing appropriate metal nanoparticles.
  • anti-NCB antibodies specific to the targeted protein
  • a chem ical linker such as DTSP is used for the attachment of antibodies on the surface of metal nanoparticles.
  • the solution should be kept in a suitable environment, under low specific temperature such as 4 S C for further use.
  • the sensitivity of the developed sensor was exam ined with the help of UV-Visible spectrophotometer, and the results are shown in Figure 7.
  • the metal nanoparticles solution was taken at first in a cuvette, and the UV- Vis absorbance response was examined. Afterward, UV-Vis absorbance spectrum was examined for the anti-NCB antibody stabilized metal nanoparticles solution and on the addition of the analyte on the antibody stabilized metal nanoparticles solution.
  • Two types of analytes were used for the study are: the total protein separated from the urine samples of the clinically confirmed cervical cancer affected patients and the crude urine samples collected from the clinically confirmed cervical cancer affected patients.
  • the increase in the intensity of the absorbance spectra with concurrent hypsochrom ic shift is found to be a cause of the LSPR phenomenon.
  • the increase in the intensity of the absorbance spectra is probably due to significant electronic changes occurred in the optical properties on the surface of metal nanoparticles owing to the interacting antibody and the reported NCB.
  • the hypsochromic shift observed is hypothesized as a reason for charge accumulation on the surface of metal nanoparticles owing to antigen-antibody interaction.
  • the selectivity of the sensor was studied by examining the interaction of the anti-NCB antibody with proteins other than the claimed NCB.
  • the results of the interference study are shown in Figure 8. For the interference study, healthy volunteers’ urine samples, individuals not affected by cervical cancer, were collected and considered for the study.
  • Figure 8(a) shows the increase in the intensity with subsequent hypsochrom ic shift (lines above blue triangular symbols and below red squared black line) on the addition of increasing volume of crude urine samples collected from the clinically confirmed cervical cancer patients to the anti-NCB attached gold nanoparticles solution (blue symbols) .
  • Figure 8( b) shows the UV-Vis absorbance results obtained after the addition of crude urine samples collected from healthy volunteers (lines above solid traffic green colored line and the blue symbols) , to the anti-NCB attached gold nanoparticles solution.
  • the results in Figure 8(c) the difference in the UV-Vis absorbance properties on the addition of healthy as well as affected patient’s crude urine samples to the same sensor solution.
  • FIG. 9(a) shows the hypsochrom ic wavelength shift observed for ten different cervical cancer affected patient’s crude urine samples, when added to the sensor solution.
  • Figure 9( b) shows the increased in intensity of the UV-Vis absorbance observed in the same experiment.
  • the plot depicts that different cervical cancer patient’s urine samples show different LSPR effect. This is probably due to the presence of different concentrations of the NCB in various cervical cancer affected patients’ urine samples owing to different stages of cervical cancer and/or probably due to different concentrations of urine at different times of a day based on the metabolic activity of the patient.
  • Cervico-vaginal fluid was collected from the early as well as advanced stages of the clinically confirmed cervical cancer patients, and total RNA from the sample was extracted. Expression of NCB transcript was checked in these samples through conventional Reverse Transcriptase-Polymerase Chain Reaction (RT-PCR) using NCB specific primers.
  • Figure 1 shows the expression of NCB transcript in the cervico- vaginal fluid collected from clinically confirmed subjects of cervical cancer and various CI N stages.
  • -actin is used as internal control for the reaction.
  • Table 1 Detailed results along with clinico-pathological status of clinical CVF samples positive for the expression of NCB.
  • NCB at the translational level in the CVF collected from the clinically confirmed cervical cancer patients was evaluated using the indirect im muno-fluorescence technique. Slides were prepared from the CVF, and after processing, it was incubated with anti-NCB specific antibody for immunostaining. The results in Figure 2 demonstrate NCB expression at the translational level in the CVF samples of cervical cancer patients. The immunofluorescence photo-micrograph indicates that the control set did not show any immune-reactivity when incubated without anti-NCB primary antibody.
  • Protein extracted from a biological fluid, urine sample, of the patient were denatured with Laemm li buffer containing 10% Betamercaptoethanol (BME) by heating of samples at 95°C for 10 min on a hot plate. Now the denatured protein samples were loaded (30 g) in each well of 12.5% SDS-PAGE gel, and then the gel was electrophoresed in a Tris-Glycine and SDS buffer system at a constant voltage i.e. 50 V. The proteins separated through SDS-PAGE were transferred onto nitrocellulose membrane by electro-blotting. The blotted membrane was stained with ponceau stain to visualize the blotted proteins.
  • BME Betamercaptoethanol
  • the membrane was washed with 1 X Phosphate buffer saline (PBS) buffer and kept for blocking in 2% Bovine serum albumin (BSA) in 0.1 % Phosphate buffer saline with Tween-20 (PBST) buffer for 1 h over rocker shaker at room temperature (25°C) .
  • BSA Bovine serum albumin
  • PBST Tween-20
  • NCB specific primary antibody at certain standardized dilutions (1 :3000) for overnight ( 12- 14 hours) at 4°C.
  • the membrane was then washed with 0.1 % PBST for three times and with 1 X PBS twice.
  • HRP horseradish peroxidase
  • Figure 4 shows the comparison of the total excreted proteins and the presence of the claimed NCB in the urine samples of the healthy and cervical cancer affected patients.
  • P1 is represented for the urine sample of the patient undergoing recurrence of cervical cancer
  • P2 is represented for the urine sample of the patient affected by cervical cancer stage 111 B
  • UH is represented for the urine sample of an unhealthy patient with abnormal pap but noncancerous cervix
  • F1 & F2 is represented for healthy female urine sample.
  • Figure 4(a) shows the Coomassie Brilliant Blue staining to visualize the protein bands in the 12.5% acrylamide gel after the Electrophoresis.
  • Figure 4( b) shows Ponceau (Pink) staining of protein bands on the nitrocellulose m embrane after electro-blotting (transfer of protein from SDS-PAGE gel to nitrocellulose membrane) of various urine samples obtained in Figure 4(a) .
  • Figure 4(c) depicts the specific bands on the membrane which was probed with anti-NCB specific primary antibody followed by enzyme tagged secondary antibody and finally developed with substrate using chem iluminescence method to produce the specific signal showing the existence of NCB antigen in the urine sample of cervical cancer.
  • I n sum these data indicate that PP1 Y2 is not present in the urine sample of healthy individuals but gets secreted in cervical cancer patients as evident from the western blot results.
  • These results signify that the NCB is a definite protein found in the urine samples of the cervical cancer affected patients.
  • FIG. 5 shows the results of the detection of NCB in the urine samples collected from various stages and groups of cervical cancer patients.
  • Figure 5(a) shows the ponceau stained protein bands and
  • Figure 5( b) shows the western blot results.
  • the data shows that the intensity of protein band for NCB is not equal for all the cases examined.
  • the variation in the intensity of the NCB bands observed in the WB results allows distinction of different stages and groups of cervical cancer. It was observed that the intensity of the protein band in UH is less intense as compared to the advanced and other stages of cervical cancer.
  • Table 2 Details of urine samples tested for NCB through WB.
  • the table data show that none of the healthy urine samples was tested positive for the presence of NCB, which is in line with the clinical results for healthy samples.
  • PP1 Y2 protein levels were elevated in urine samples of the cervical cancer patients.
  • the increased level of PP1Y2 protein could be detected in the patients urine samples as early as in CIN I, thus providing an opportunity for early diagnosis of the disease.
  • PP1Y2 protein expression was also examined in CVF samples through RT-PCR and urine sample through WB in patients inflicted with cervical intraepithelial neoplasia (CIN), various stages of cervical cancer (CaCx), patients undergoing treatment (Tre), patients showing recurrence of the disease and cases of abnormal noncancerous cervical pap.
  • Table 3 shows comparative results of the CVF samples tested through RT-PCR and urine samples of the same set of patients through WB for the assessment of NCB appearance profile, simultaneously.
  • a total of fifty-two (52) patients were enrolled for this study, and both CVF and urine samples were collected from the cervical cancer sites of the respective subjects.
  • Twelve (12) patients were clinically confirmed stage IIA/IIB cervical cancer, ten (10) patients from stage 111 A/l 11 B cervical cancer, and thirteen (13) patients infected with CIN ll/lll stage.
  • Seven (07) patients undergoing treatment for the disease were clinically found to be positive with cervical cancer.
  • Two (2) patients were clinically diagnosed with a recurrence of cervical cancer, and eight (08) patients were found to have abnormal but noncancerous pap.
  • CVF samples confirmed the presence of NCB in RT-PCR, whereas NCB was validated in urine samples of ten (10) (77%) patients through WB technique.
  • two (02) (29%) showed the presence of the NCB in CVF in RT-PCR wherein the number was found to be six (06) (86%) when NCB examination was done with the urine samples of the respective patients through WB technique.
  • PP1 Y2 as a reliable and sensitive biomarker dedicated for the early identification of the cervical cancer cases regardless of the stage of the development of the cancer.
  • the above-mentioned data illustrate that PP1 Y2 is expressed in high percentages in the urine sample of the patients suffered from cervical cancer diseases, any stage or group, whereas the healthy volunteers’ urine samples do not express any PP1 Y2 protein. I n abstract, these data suggest that PP1 Y2 is a potential and reliable biomarker for cervical cancer.
  • UV-Vis spectrum of the gold nanoparticles was obtained by mixing 1 .5 m l of synthesized gold nanoparticles with 1 m L of Mili-Q water as shown in Figure 7(a) . Afterwards, UV-Vis spectrum of 1 .5 m L solution of chemical linker, DTSP, linked gold nanoparticles diluted with 1 m I of Mili-Q water were observed. Furthermore, 60 pl of anti-NCB antibody solution, prepared in PBST buffer was added to the DTSP linked gold nanoparticles.
  • Figure 7(c) shows the variation in the absorbance intensity and the subsequent hypsochrom ic shifts with progressive addition of different volumes of the crude urine samples of the cervical cancer patient ranging from 20 pL to 300 pL.
  • the experiment suggests as long as the unbound paratope sites are available on the anti-NCB antibodies present on the surface of the gold nanoparticles, the epitope site on the reported NCB, present in the affected urine sample, selectively binds to the antibodies on the gold nanoparticles via lock and key mechanism .
  • UV- Vis spectroscopic response of the gold nanoparticles solution was taken by adding 1 .5 m L of the synthesized gold nanoparticles solution with 1 m L of Milli-Q water. Afterward, UV-Vis spectrum was recorded for 1 .5 m L of DTSP linked gold nanoparticles solution diluted with 1 m L of Milli-Q water. To this solution, 60 pL of anti-NCB antibody solution, prepared in PBST buffer, was added, and the UV-Vis spectrum was recorded. Furthermore, different volumes of the required analyte were added to the anti-NCB antibody stabilized gold nanoparticles solution, and the UV-Vis spectra were recorded.
  • Figure 8(a) shows the UV-Vis spectrophotometric response for the interaction of anti-NCB antibodies with cervical cancer affected patients’ urine samples (where the complimentary antigen, NCB, is present) .
  • the results show the LSPR effect on the addition of different volumes of cervical cancer affected patient’s urine sample to the solution containing anti-NCB antibodies stabilized gold nanoparticles solution.
  • the healthy volunteer’ urine sample (collected from a healthy woman, where the complementary antigen is absent) to the anti-NCB antibodies stabilized gold nanoparticles solution, no such LSPR effect was observed as it can be depicted in Figure 8( b) .
  • results in the plot show either a decrease or no significant change in the intensity of the absorbance spectra on the addition of the healthy urine samples. This is probably due to the absence of any interaction between the reported NCB, which is absent in a healthy urine sample, with the corresponding anti-NCB antibodies stabilized on the gold nanoparticles.
  • Figure 8(c) shows the UV-Vis spectra obtained after the addition of cervical cancer affected patient’s urine samples and healthy volunteer’s urine samples alternatively.
  • the results show that the developed sensor responds only if the analyte contains the reported NCB, as the intensity of absorbance increases, with respect to the UV-Vis spectrum for antibody stabilized gold nanoparticles solution, in that case only, whereas it is not sensitive towards healthy volunteer’s urine sample, as the intensity is not changing with respect to the UV-Vis spectrum for antibody stabilized gold nanoparticles solution.
  • Figure 9( a) shows the hypsochromic change (A ⁇ ) observed due to LSPR effect on the addition of the affected patient’s urine sample on the anti- NCB stabilized gold nanoparticles solution for ten (10) different urine samples (U1 -U10).
  • the A was calculated by measuring the difference in the wavelength between the peak of UV-Vis spectra of the anti-NCB antibodies stabilized gold nanoparticles and the peak of the UV-Vis spectra after the addition of the cervical cancer affected patient’s urine sample.
  • Figure 9( b) shows the change in the intensity of the absorbance spectra (A N ) observed due to LSPR effect on the addition of the affected patient’s urine sample on the anti-NCB stabilized gold nanoparticles solution for ten ( 10) different urine samples (U1 -U10) .
  • the A N was calculated by measuring the difference in the intensity of absorbance observed for the UV-Vis spectra of the anti-NCB antibodies stabilized gold nanoparticles solution and the intensity of the absorbance observed for the UV-Vis spectra after the addition of the clinically confirmed cervical cancer patients’ urine sample.
  • the detection unit comprises of a glass cuvette filled with the transformed sensing solution wherein the mentioned anti-NCB antibodies are expected to interact with the protein of interest present in the analyte to generate quantifiable optical signal corresponding to the concentration of the protein present in the analyte.
  • the three-dimensional (3D) design of the developed optoelectronic device shows the components of the developed apparatus. It consists of a sample stage ( 101 ) an optical transduction set up ( 102) , ( 103) , ( 104) , ( 105) , and a signal processing unit programmed to convert the incom ing signals for display,
  • Figures 6(a) ( i-vi) represents the isometric, front, bottom , left, right, top view of the aforementioned developed apparatus
  • the optical transduction set up comprises of an optical source housing ( 102) ( Figures 6( c) ( i-iii)) to hold the LSPR optical source such as a LED ( 103) , an optical detector chamber ( 104) ( Figures 6(d) ( i-iii) ) to hold the optical detector such as photodetector ( 105) along with a glass cuvette placed in between the optical source and the photodetector;
  • the signal processing unit comprises of a microcontroller which is programmed to process the incoming transm itted analog signals from the photodetector to convert it into digital signals which is then displayed for easy legibility of the end user.
  • the m icrocontroller is also commanded with calibrated data of various concentration of the protein to be identified, obtained experimentally, to measure the correct level of the protein of interest exists in the analyte examined.
  • the detailed component arrangement of the optical transduction set up is shown in Figure 6.
  • black polymer is used to design the entire casing of the device to create dark environment in order to m inimize the interference of external diffused light on the sensing set up.
  • Two hollow spaces are arranged to mount the optical source, such as LED and the photodetector.
  • the holes to house the LED and the photodetector are done in accordance with the dimensions of the component used.
  • a frame for positioning the glass cuvette is also arranged in the apparatus set up.
  • the optical source is connected to a power supply such as battery through a resistor.
  • the photodetector is connected externally to the signal processing unit.
  • the signal processing unit is developed employing the open source chicken Uno R3 development board. It consists of chicken I ntegrated Development Environment (I DE) software platform used for programm ing and interfacing chicken board with the external circuitry through m icrocontroller fitted with the chicken Uno R3 board.
  • the microcontroller embedded is ATmega328p and is fitted with command to convert the analog input signals from the photodetector to digital output readings.
  • the ATmega328p m icrocontroller of the chicken Uno R3 board consists of 6 analog pins and 14 digital pins used as input or output pins. It is regulated at 16 MHz clock pulse using ceramic resonator. Also, it has a USB jack which can be used both as a power supply unit and for uploading the program . It has 10-bit ADC (Analog to Digital Converter) for digitizing the analog input from the photodetector. The input from the photodetector is set to any analog pins on the development board.
  • ADC Analog to Digital Converter
  • the circuit diagram of the developed device is illustrated in Figure 10.
  • the figure shows the internal circuitry of the open source chicken Uno R3 development board to which the other components are interfaced.
  • the positive end of the LED used is connected to the 5V pin of the chicken Uno via a 1 k resistor and the negative pin of the LED is connected to GND pin of the chicken Uno.
  • two analog pins are required for inter IC (integrated circuit) connection.
  • the serial clock (SCL) and serial data (SDA) pins of the photodetector are connected to A4 and A5 pins of the chicken Uno development board.
  • the V cc and GND pins of the photodetector are connected to the 3.3 V and GND pins of the chicken Uno board.
  • the serial clock (SCL) and serial data (SDA) pins are connected to the A4 and A5 analog pins of the chicken Uno board.
  • the V cc and GND pins of the display are connected to the 3.3 V and GND pins of the chicken Uno board.
  • the mid- st ream 10-45 m L crude urine samples at any random time of the day were collected from the patients in 50 m L sterile conical centrifuge tubes and placed im mediately in the cool box. The samples were immediately transported to the lab. Further, the urine sample was filtered through the Whatmann paper (8 pm) to remove the m ucus and contaminant followed by the centrifugation at 1000* g for 5 m in at 4°C to remove any other contam inant left, which m ight not remove through filtration.
  • a peptide corresponding to 23 am ino acids specific to the C-term inal of NCB was synthesized commercially from LifeTein, LLC, Hillsborough, New Jersey, USA, for the antibody generation. Mass Spectrometry analysis was done to assess the integrity of the synthetic peptide as given in Figure 1 1 .
  • Synthetic peptide specific to the NCB protein i.e. PP1 Y2 was dosed to the female rabbit at optimized time point to raise the polyclonal antibodies in two female rabbits.
  • Pre-immune sera were collected from these animals; afterward these animals were immunized with the first dose of 200 g of purified peptide with complete Freund’s adjuvant and boosted five times with 100 g of the same peptide at intervals of 7 days in incomplete Freund’s adjuvant.
  • 500 L of serum was collected after every two dosages of peptide injection and the complete serum was collected from the final bleed, which was affinity-purified through the same synthetic peptide. The specificity of the affinity-purified antibody was tested against the 200 ng of this peptide and 50 g of mouse testis extract.
  • PBST buffer was prepared by dissolving 0.1 % (v/v) of Tween-20 surfactant to the required amount of prepared 1 X PBS buffer, and 4°C storage condition was maintained.
  • Bovine Serum Album in (BSA) solution 1 % (w/v) Bovine Serum Album in (BSA) solution was prepared with a previously prepared PBST solution. 2.44 mg/m L stock solution of antibody was diluted, maintaining a ratio of 1 :3000 in freshly prepared 1 % BSA solution. The stock solution of the antibody (Reagent I ) was stored initially at -20°C. For dilution purposes, the antibody stock solution was thawed at 4°C. The diluted antibody solution was then kept again at - 20°C until further use.
  • BSA Bovine Serum Album in
  • Laemmli sample buffer (2X) was prepared by using 100 m M of Tris HCL (pH 6.8) , 0.02% Bromophenol Blue, 20% p-mercaptoethanol, 2% Sodium Dodecyl Sulphate (SDS) and 20% Glycerol in double distilled/ RO water.
  • Tris-Glycine running buffer ( 1 X) was prepared by dissolving 25 mM Tris, 192 m M Glycine and 0.1 % SDS in double distilled/ RO water.
  • Transfer Buffer (2X) was prepared by dissolving 50 mM Tris Base, 384 m M Glycine, and 10% Methanol in double-distilled/RO water.
  • Radio-im munoprecipitation assay buffer (RI PA buffer) was commercially purchased from Sigma Aldrich (Cat. No. R0278) .
  • HAuCI 4 0.25 m M aqueous Tetrahydrochloroaurate (HAuCI 4 ) solution
  • Reagent I I 0.25 m M aqueous Tetrahydrochloroaurate (HAuCI 4 ) solution
  • Reagent I I I 0.25 m M aqueous Tetrahydrochloroaurate (HAuCI 4 ) solution
  • Reagent I I I 0.25 m M aqueous Tetrahydrochloroaurate ( HAuCI 4 ) solution
  • DTSP solution of 5 mM strength was prepared by dissolving 2 mg of solid DTSP powder in 1 m L of Mill i-Q- water. For further usage, 1 : 10 dilution of the prepared DTSP solution in Milli-Q water was done. This diluted solution (Reagent V) was kept at 4°C in an airtight container for subsequent use.
  • DTSP attached gold nanoparticles solution was obtained by adding 1300 pL of diluted DTSP solution (Reagent V) was added to 7 m L of gold nanoparticles solution ( Reagent I V) . This solution was kept in the dark for an hour and was then filtered using a syringe filter of 0.45 pm in diameter. The prepared solution of DTSP attached gold nanoparticles solution thus obtained ( Reagent VI ) was stored at 4°C for further use.
  • the Reagent VI is the required sensor used for further analysis of the analyte.
  • NPB protein of interest
  • the calibration curve shows the variation of the normalized intensity of the transm itted signal collected by the photodetector with the change in the amount of NCB present in the urine sample of the subject.
  • I f represents the transmitted signal intensity obtained by illum inating the sensor solution after the addition of urine sample.
  • the normalized transmittance intensity decreases with increase in the volume of the urine sample added to the sensor solution.
  • the reason for such observations is as follows, initially when only the sensor solution was analyzed, where there is absence of NCB and thus there is no interaction of antibody and antigen takes place, the absorbance of incident light is low and hence the transmittance intensity is high. Sim ilarly, with the addition of NCB from the analyte to the sensor, the interaction between the antibodies stabilized on the sensor and the NCB from the urine sample of the patient which increases the absorbance of the incident light and thus the transmittance signal intensity decreases. The transmittance signal intensity decreases gradually with increase in the addition of NCB to the sensor solution until the phenomenon reaches a saturation point. The transmittance signal intensity obtained in the photodetector is then converted into legible signal is monitored by the signal processing unit as depicted in Figure 12.
  • a calibration curve is fitted into the m icrocontroller system to map the increase in the volume of the urine sample collected from the cervical cancer affected subject, which is equivalent to the increase in NCB concentration, to the change in the normalized transm ittance signal intensity as observed in the photodetector arranged in the device.
  • the m icrocontroller is capable to process the incom ing signal, map it to the calibration curve and inform the severity of the disease.
  • the LED/LDR arrangement translates the variation in the LSPR signal of the liquid sample in the cuvette during the specific epitopeparatope antigen-antibody reaction into the variation in the intensity of the transmitted light. Subsequently, the presence of the marker and the amount of the marker can be quantified with the help of the variation in the intensity of the transm itted light, as discussed with the figures 9 and 12. I mportantly the low-cost POCT system/method was found to be at par with high end and costly UV-Vis spectra.
  • the present invention provides for a simple and cost-effective biomarker sensor specific sensing of cervical cancer through targeting PP1 Y2 biomarker and a non-invasive point of care testing (POCT) facilitating biomarker based cervical cancer detection system , which finds application for screening of cervical cancer non-invasively from the urine sample of the subject.
  • a simple and cost-effective biomarker sensor specific sensing of cervical cancer through targeting PP1 Y2 biomarker and a non-invasive point of care testing (POCT) facilitating biomarker based cervical cancer detection system , which finds application for screening of cervical cancer non-invasively from the urine sample of the subject.
  • POCT point of care testing

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Abstract

A biomarker sensor specific sensing of cervical cancer comprising gold5nanoparticles with capture molecule immobilized thereon exhibiting LSPRfor target, PP1ϒ2 biomarker and a non-invasive and point of care testing(POCT) device facilitating biomarker based cervical cancer detectionsystem comprising an optical source; a sample stage holding saidbiomarker sensor comprising gold nanoparticles with capture molecule10immobilized thereon adapted for exhibiting LSPR for target PP1ϒ2biomarker in the analyte for LSPR based target biomarker detection and asignal processor means including an optical detector. The said POCT isbased on the detection of the intensity change happens due to thevariation in the refractive index at the surface of a Localized Surface15Plasmon Resonance (LSPR) system owing to lock-and-key interaction ofantibody and antigen.

Description

Title o nvention : POCT DEVI CE TO DETECT CERVI CAL CANCER SPECI
Figure imgf000003_0001
C BI OMARKER.
Fl ELD OF I NVENTI ON
Present invention provides a biomarker sensor for sensing cervical cancer specific biom arker. More specifically, the said sensor com prises gold nanoparticles with capture molecule im mobilized thereon exhibiting Localized Surface Plasmon Resonance ( LSPR) for target protein, Protein Phosphatase- 1 gam ma-2 (PP1 Y2) , a novel cancer biomarker (NCB) . Present invention discloses a non-invasive point-of-care-testing (POCT) device facilitating biomarker based cervical cancer detection system comprising of a cervical cancer marker PP1 Y2, present in the urine sample of the patients suffering from cervical cancer. The said device employs colorimetric principles for the detection of the said marker in human urine, thus finds application in rapid and painless POCT diagnosis of cervical cancer.
BACKGROUND OF TH E I NVENTI ON
Worldwide, cervical cancer is the fourth most widely affected cancer type among women (Arbyn et al., "Estimates of incidence and mortality of cervical cancer in 2018: a worldwide analysis" , The Lancet Global Health 8 , e191 ; 2020) and is am ong the leading causes of malignancy of the tumors present in the fem ale reproductive system . Nearly 70% of all cervical cancer cases are caused due to sexually transm itted high-risk and oncogenic, Human Papillom avirus ( HPV) infection, m ostly by HPV 16 and 1 8 types (Clifford et al., "Hum an papillom avirus types in invasive cervical cancer worldwide: a meta-analysis", British journal of cancer 88 , 63;2003) . A few of the HPV infections are common and are not cancerous (Beutner et aL, "Human papillomavirus and human disease", The American journal of medicine 102 , 9; 1997) . These types of infections are generally controlled by the inherent im mune system and get cured within 1 -2 years of occurrence (M. Schiffman, "Human papillomavirus and cervical cancer", The Lancet 370 , 890;2007) . However, the transition of the infection may cause several changes in the cervical cells, if not get healed, and can eventually transform into precancerous lesions. The untreated precancerous lesions (Cervical I ntraepithelial Neoplasia - CI N) can progress to cervical cancer in 10-20 years. Thus, it is recom mended to have routine cervical cancer screening every 3rd year for women younger than 21 years of age (D. M. Eddy, "Screening for cervical cancer", Annals of I nternal Medicine 1 13 , 214; 1990). The objective is to identify the disease in the precancerous stage or at the early stage of the development of cervical cancer. It is found that the five-year survival rate for stage I cervical cancer patients is around 54% , which reduces to 40% for stage I I cervical cancer patients and drops to around 18% for stage I I I and stage IV patients, respectively (N. A. Razak, "Estimating the five-year survival of cervical cancer patients treated in Hospital Universiti Sains Malaysia", Asian Pacific Journal of Cancer Prevention 14, 825; 2013) .
Hence, it is recommended for repeated Papanicolaou test (Pap test) to ensure successful identification of the fatal disease at early stages, leading to a reduced mortality rate (Schiffman et aL, "Human papillomavirus and cervical cancer", The Lancet 370 , 890;2007) . Although these screening tests have the advantage of early diagnosis, the tests are expensive, extremely invasive and require highly skilled professionals and trained health care personnel for supervision. There are several conventional procedures widely used for cervical cancer screening. HPV testing is one of the tests for the presence of high-risk infections in cervical cells (R. Sankaranarayanan, "HPV screening for cervical cancer in rural I ndia," New England Journal of Medicine 360 , 1385;2009) . Likewise, in Pap (Papanicolaou-stained) testing (Das et aL, "Cytological pattern of papanicolaou smears and detection of cervical cancers: An experience from a tertiary care center of eastern zone of I ndia", Oncology Journal of I ndia 2 , 25; 2018) , Pap smear is used to screen for CIN, HPV/Pap co-testing (Hutchinson et aL, "Utility of liquid-based cytology for cervical carcinoma screening: results of a population-based study conducted in a region of Costa Rica with a high incidence of cervical carcinoma", Cancer Cytopathology : I nterdisciplinary I nternational Journal of the American Cancer Society 87, 48; 1999) where the collected cell samples are monitored for high-risk HPV types and cervical cell changes, and visual inspection after application of acetic acid (VIA) or Lugol’s iodine (VI LI) in the cervical region which stains the cancer affected cells in the cervical region and helps in easy distinction of cancerous from noncancerous tissues (Duraisamy et aL, "Methods of detecting cervical cancer", Advances in Biological Research 5, 226;201 1 ) . I n HPV inspection or Pap test methods, cervical cells are collected from the cervix using a swab such as wooden or plastic scraper and/or cervical brush and are stored in a liquid preservative vial for further examination for the presence of any HPV infection or cervical cell changes using Pap cytology test (Duraisamy et aL, "Methods of detecting cervical cancer", Advances in Biological Research 5, 226; 201 1 ) . An abnormal Pap smear result is trailed by colposcopic examination, biopsy and histological confirmation of the results (The Lancet 370, 890; 2007) . The whole procedure is not only tiresome for the patient but also necessitates well- trained health care professionals for monitoring the results accurately, which may vary even in experts’ hands.
A lot of researches have already been performed directed towards both improved diagnosis and early detection of cervical cancer. A few recent works show enhanced, modern, and m iniaturized diagnostic tools which can improve the colposcopic performance even in the less experienced hands (Das et al., “Elim ination of specular reflection and identification of ROI : The first step in automated detection of Cervical Cancer using Digital Colposcopy”, I EEE, 237; 201 1 ) . A few other works report fluorescence (Turner et al., "Ensembles of radial basis function networks for spectroscopic detection of cervical precancer", I EEE Transactions on Biomedical Engineering 45 , 953; 1998) , infrared (Wood et al., "Fourier transform infrared (FTI R) spectral mapping of the cervical transformation zone, and dysplastic squamous epithelium", Gynecologic oncology 93 , 59;2004) and Raman spectroscopic techniques (Kanter et al., "Application of Raman spectroscopy for cervical dysplasia diagnosis", Journal of biophotonics 2 , 81 ;2009) for the detection of precancerous lesions leading to early detection of positive cases of cervical cancer. Many groups have also reported auto-fluorescence technique (Benavides et al., "Multispectral digital colposcopy for in vivo detection of cervical cancer" , Optics express 1 1 , 1223; 2003) , which can better differentiate the normal cells with cervical dysplasia as compared to the conventional technique of cervicography (Duraisamy et al., "Methods of detecting cervical cancer", Advances in Biological Research 5 , 226;201 1 ) where the cells are differentiated by the application of acetic acid. Apart from all these, a few developments have also done in the field of detection of HPV DNA as a tool for the early detection of cervical cancer (Benavides et al., "Multispectral digital colposcopy for in vivo detection of cervical cancer", Optics express 1 1 , 1223;2003) . Also, some groups have examined CA- 125 antigen from blood serum for the early detection of cervical neoplasia (Porika et aL, "Squamous cell carcinoma antigen and cancer antigen 125 in southern Indian cervical cancer patients", Asian Pac J Cancer Prev 1 1 , 1745;2010) . However, many of the reported techniques either use bulky instruments or these are invasive in nature.
Since the primary causes of cervical cancer are governed by several complicated mechanisms, identification of a particular biomarker for this fatal disease has been elusive. There are number of reports available regarding different professed biomarkers of cervical cancer, such as, U.S. Pat. No. 7,157,233 has reported a number of cell cycle regulation genes, including p144RF, p21 waf1 , Topo2A and cyclin-E as the possible biomarkers for the identification of cervical dysplasia. Sim ilarly, U.S. Patent No. 7,186,514 has discovered a new gene, MN gene, which is present in chromosomal DNA that signifies conditions of tumorigenicity in various tissues, including cervical tissues. I n another work, U.S. Patent No. 20050186215A1 identified a human gene, CUDR, in cancer cells. However, these works represent a generalized route to the clinical detection of cervical cancer, as the genes mentioned above are not unique to cervical cancer owing to its expression in other tumor cells and m inute levels in even normal cells too.
Furthermore, U.S. Patent No. 6,709,832 reported another cell cycle regulatory protein, p1 QINK4a t as a potential biomarker for cervical cancer, which is overexpressed in biopsies of cervical dysplastic cells from CI N I , I I , I I I and even more significant in invasive carcinomas. Later, in a U.S. Patent No. 7,306,926, authors formalized a procedure to measure p QINK4a as a diagnosis tool for the detection of cervical cancer from the solubilized cervical samples collected from the cervix of the affected patients. Thus far, p16/WK4/l is the lone protein, which is the only com mercially available biomarker for cervical cancer. I n another patent, U.S. Patent No. 8,900,813, authors have claimed the discovery of CI P2A as a positive biomarker for the detection of cervical cancer. It is reported that either CI P2A m RNA or Cl P2A protein or both can be used with at least one additional biomarker such as MCM2, MCM5, p14/lRF' and p1 6/WK4a to serve better as a detection tool for cervical cancer.
I n a sim ilar line, the present invention claim s for the advancement involving a potential and particular biom arker PP1 Y2, secreted from the cervical dysplasia and neoplasia tissues as an NCB for the detection of cervical cancer (Chakrabarti et al., "Protein phosphatase PP1 y2 in sperm m orphogenesis and epididym al initiation of sperm motility" , Asian journal of andrology 9 , 445; 2007) . The said biom arker also appears in the urine of the affected patients, and hence elim inates the need for the scrapping of cervical tissues for exam ination. It has been observed through exam inations that the mentioned protein is detected in precancerous as well as all the cancerous stages of Cervical Cancer, irrespective of the stage of cancerous lesions. However, the concentration varies with stages of cancer growth.
This invention also states the development of a point-of-care-testing ( POCT) device, which will surely transform the screening process for cervical cancer from tedious and highly invasive procedure to effortless and painless practice. I n the present era, POCT devices have gained enorm ous popularity and have occupied a significant sector of the medical field, due to its advantages of in situ monitoring of health, reliability, realtime results, portability, and econom ic values (Luppa et al., "Point-of-care testing (POCT) : Current techniques and future perspectives", TrAC Trends in Analytical Chemistry 30 , 887; 201 1 ) . There are a variety of commercially available biosensors categorized on the basis of the signal transduction technologies like optical (Damborsky et aL, "Optical biosensors", Essays in biochemistry 60, 91 ; 2016) , electrochemical (U.S. Patent No. 5776324A) , thermometric (Ramanathan et aL, "Principles and applications of thermal biosensors", Biosensors and Bioelectronics 16 , 417;2001 ) , piezoelectric (P. Skladal, "Piezoelectric biosensors", TrAC Trends in Analytical Chemistry 79 , 127 , 2016) or magnetic (J. B. Haun, "Magnetic nanoparticle biosensors", Wiley I nterdisciplinary Reviews: Nanomedicine and Nanobiotechnology 2 , 291 ;2010) . Among all these, exponential growth on research and development of the optical biosensors directed towards health care, environmental applications and biotechnology have been highly experienced over the last few decades.
An optical biosensor system is a sensitive analytical device consisting of a bio recognition sensing element, such as enzyme, antibody, antigen, receptor, nucleic acids, whole cells or tissues, integrated with an optical transducer element aimed to produce signals proportionate to the concentration of the analyte. These systems are capable of diagnosing various biomarkers present in certain body fluids, for example serum , sputum , sebum , tear or urine, and among others, which has permitted the efficient detection of a number of fatal diseases. I n lieu of its advantages in terms of direct, real-time, sensitive, selective, and label- free detection of miscellaneous chemical or biological substances over conventional analytical techniques, optical biosensors have empowered affordable diagnosis at patients’ site. Further, among others, the imm unosensors (La et aL, "Im munosensing using nanoparticles", Materials today 13 , 24;2010) exploiting the colorimetric sensing capacities are considered as the most consistent technique for the quantitative analysis of biomarkers present in various biological fluids owing to its nature of specific lock and key interaction between the sensor material and the analyte form ing a visual color change on reaction.
Although the colorimetric sensing methods, which show a significant color change upon interaction with the required target, have been widely accepted and appreciated for its ease of exam ination with naked eye, they also possess quite a few drawbacks. At first, the development of considerable color upon interaction with the target present in the analyte necessitates a huge amount of analyte to be used to differentiate between the control and the affected cases. Also, if the concentration of the target in the analyte is very less, the result of the interaction of the analyte and the sensor may provide false results as there m ight not be significant color change. Thus, the dynamic range of the reaction lim its to slightly over one order of magnitude. Also, a few of the enzyme based colorimetric sensing takes longer time to respond, hence difficult to incorporate for real time analysis.
Optical transduction of the colorimetric sensor responses, other than visual color change, can be analyzed with a number of spectroscopic techniques. The binding event between the capture molecule and the target can be optically observed by labeling the capture molecule with a tag for such as florescent tag as in Enzyme Linked I mm unosorbent Assay (ELISA) used for fluorescent spectroscopy (Tian et aL, "A copper based enzyme-free fluorescence ELISA for HER2 detection", Journal of imm unological methods 451 , 78;2017) or Raman tag for Raman spectroscopy (Zong et aL, "Surface-enhanced Raman spectroscopy for bioanalysis: reliability and challenges," Chemical reviews 1 1 8 , 4946;2018) . However, these labeled tags can have adverse effects on assay results due to the steric hindrance to the attached biomolecules. Further, these methods are not compatible to real time testing as well as increase the device complexity and cost. Hence, label-free assays are more advantageous for real time analysis, providing improved performance and sensitivity, and can also be used for biomolecular interaction analysis. One such improved and label free transducer is metal nanoparticle. These are used as a tool to monitor binding events through a phenomenon known as Localized Surface Plasmon Resonance (LSPR) (Zhou et aL, "The analysis of nobel metal nanoparticles LSPR phenomena", Chinese Journal of Sensors and Actuators 5 , 007;2010) . Thus, this technique can be efficiently exploited for the early detection of innumerable fatal diseases, including various forms of cancer, even if the antigen is present in very minute amount. Such methods have certainly modernized effective patient management and, potentially, reduce mortality rate.
The development of biocompatible nanoparticles, such as gold, silver, copper, and among others have provided a proficient sensing probe for targeted therapy (Tiwari et aL, "Functionalized gold nanoparticles and their biomedical applications", Nanomaterials 1 , 31 ;201 1 ) . The basic rationale is that the nanometer-sized-particles have larger surface to volume ratio which provides improved conjugation sites for multiple diagnostic and therapeutic agents over bulk materials. This improvement in the structural and functional properties has not only m iniaturized the analyte volume required for the detection but also has provided scope for the economic portable devices. Also, these metal nanoparticles are capable of showing LSPR property, which shows specific sharp spectral absorbance peaks owing to the attachment of the biomolecules and produces explicit electromagnetic near-field shifts with the change in the local refractive index in the surrounding of the nanoparticle (Zhou et aL, "The analysis of nobel metal nanoparticles LSPR phenomena", Chinese Journal of Sensors and Actuators 5, 007;2010) . This property of the LSPR phenomenon is exploited to determine the concentration of the particular target in the complex medium .
I n the same direction, this work is also focused on the development of a clinical diagnostic tool for non-invasive and early identification of cervical cancer, exploiting an improved spectroscopic metal nanoparticle-based sensing technique i.e. LSPR. This system will surely meet the demand of a reliable tool to ease the screening process of cervical cancer and will clear the deficiencies of all the prior arts.
OBJECT OF I NVENTI ON
One of the basic objects of the present invention is to provide sensing of cervical cancer specific to bio-marker NCB (PP1Y2), wherein the over expression of the said protein strongly indicates the occurrence of cervical cancer in females.
Another object of the present invention is to measure the appearance of the said biomarker in urine of the subjects non-invasively.
A further object of the present invention is to provide antibodies against the NCB wherein the said antibody when used in Western Blot (WB) assay detects expression level of NCB. Yet another object of the present invention provides a sensor comprising a colloidal solution of surface modified metal nanoparticles imparting LSPR property.
Still another object of the present invention provides surface modified metal nanoparticles by capping the surface of the nanoparticles with a chem ical linker substance, which preferentially attract the specific capture molecules, antibodies, in subsequent addition.
Another object of the present invention is to provide a simple, non- invasive and user-friendly point of care testing (POCT) device for early and real time identification of the targeted protein biomarker for early detection of cervical cancers.
SUMMARY OF THE I NVENTI ON
The basic aspect of the present invention is to provide a biomarker sensor for specific sensing of cervical cancer comprising gold nanoparticles with capture molecules im mobilized thereon exhibiting LSPR for targeted PP1 Y2 biomarker.
I n another aspect, the present invention provides a biomarker sensor comprising said anti-PPl Y2 biomarker antibody, which is specific towards the target PP1 Y2 biomarker, required to be detected in any biological fluid-based analyte including urine samples, as the said capture molecule which is linked and immobilized on said gold nanoparticle.
A further aspect of the present invention is to provide a biomarker sensor wherein said PP1 Y2 biomarker antibody as capture molecule is linked and immobilized on said gold nanoparticle involving antibody to gold nanoparticle linkers preferably 3 ,3' - Dit h iod ipropion ic acid di(N- hydroxysuccinim ide ester) DTSP, 1 -Ethyl-3-(3-dimethylamino propyl)carbodiim ide (EDC)/N-hydroxysuccinimide EDC/NHS, cystemine, 3,3-Dithio- bis-(sulfosuccinimidyl)propionate (DSP) , 3,3' -Dithiobis (sulfosuccinim idyl propionate) (DTSSP) and the like.
I n a still further aspect, the present invention provides the biomarker sensor comprising load of said PP1 Y2 biomarker antibody as capture molecule on said DTSP attached gold nanoparticles is in proportions of 60 pL to 1 .5 m l, respectively.
I n a further aspect, the present invention provides the biomarker sensor wherein said gold nanoparticles comprises nanoparticles of ~ 5 nm to ~ 10 nm in diameter having wine red color.
I n another aspect, the present invention provides a non-invasive and point of care testing (POCT) facilitating biomarker based cervical cancer detection system comprising: i) an optical source; ii) a sample stage including biomarker sensor comprising gold nanoparticles with capture molecules im mobilized thereon adapted for exhibiting LSPR for targeting PP1 Y2 biomarker in the analyte through LSPR based target biomarker detection; iii) a signal processor means including an optical detector.
A further aspect of the present invention provides a non-invasive and point of care testing (POCT) facilitating biomarker based cervical cancer detection system comprising of said biomarker sensor specific towards the target PP1 Y2 biomarker required to be detected in any biological fluid based analyte preferably in urine samples including said gold nanoparticles of ~ 5 nm to ~ 10 nm in diameter having said capture molecule comprising anti-PPl Y2 biomarker antibody and wherein said chem ical linker to stably immobilize said capture molecule is selected from DTSP, EDC/NHS, cystem ine, DSP, DTSSP preferably DTSP.
Yet another aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system which is configured to allow said biomarker present in analyte/urine sample and the antibody immobilized on gold nanoparticles interaction and generation of output signals confirm ing LSPR intensity variation based thereon.
A still further aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection comprising said optical source such as a light emitting diode (LED) having narrow wavelength between ~ 515 nm and ~ 540 nm , comprising said optical detector, which is including a silicon photodiode capable of sensing in the visible light wavelength range and capturing the variation in the transmitted light intensity compatible to the signal processing unit, with said sample stage including a cuvette, placed in between said the optical source and the said optical detector including photodetector, and wherein said signal processor means including transmission intensity based generation of calibration plot and diagnosis of the unknown samples.
I n another aspect, the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system comprising an optoelectronic device including: an optical transduction set up comprising optical source housing for LSPR optical source preferably LED, an optical detector preferably a silicon photo detector with said sample stage including a glass cuvette placed in between said optical source and the said photodetector, said signal processing means operatively connected to display, means for detection purposes.
A further aspect of the present invention provides a non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system wherein the optical source illum inates the sensing material held by the glass cuvette, and the output transm itted signal is collected by the photodetector arranged in the apparatus set; said signal processing means comprises of a m icrocontroller for processing incoming transmitted analog signals from the photodetector to convert it into digital signals for subsequent display, wherein display means for easy end user detection, said m icrocontroller com manded with pre-loaded calibrated data of various concentration of the protein to be identified, to enable measuring of the correct level of the protein of interest present in the analyte examined.
A still further aspect of the present invention provides a process for the manufacture of the biomarker sensor for specific sensing of cervical cancer comprising: i) providing gold nanoparticles in the range of ~ 5 nm to ~ 10 nm ; ii) involving solution of the chem ical linker to generate chemically linked gold nanoparticles; iii) adding selectively 60 pL to 1 .5 m L of anti-NCB antibody solution to the DTSP linked gold nanoparticles to thereby provide the gold nanoparticles with said anti-NCB antibody capture molecules immobilized thereon capable of exhibiting LSPR for target PP1 Y2 biomarker.
BRI EF DESCRI PTI ON OF THE ACCOMPANYI NG Fl GURES
Figure 1 Depicts gel showing the expression of NCB transcript in the cervico-vaginal fluid collected from clinically confirmed subjects of cervical cancer and precancerous stages. -actin served as internal control for the reaction.
Figure 2 Depicts I mmunofluorescence micrograph showing signal of NCB in the cells of the cervico-vaginal fluid collected from the clinically confirmed cervical cancer patients.
Figure 3 Depicts photo-micrograph showing co-expression of NCB and HPV in the cervico-vaginal fluid collected from early and advanced stages of cervical cancer patients. Red fluorescence depicts NCB while green shows HPV signal in the specimen. DAPI is showing blue staining for the nucleus of the cells.
Figure 4 Depicts comparison of total secreted protein and detection of NCB in the urine samples of healthy, unhealthy females as well as cervical cancer patients, (a) Coomassie staining of gel shows separated urine proteins through SDS-PAGE. (b) Ponceau staining of blot shows blotted protein profile of various urine samples, (c) Western blot shows the shedding of NCB antigen in cervical cancer patients’ urine. P1 : recurrence of cervical cancer; P2: cervical cancer stage I I I B; UH: Unhealthy with abnormal pap but noncancerous cervix; F1 & F2: Healthy female urine sample. Figure 5 Depicts the detection of NCB in the urine samples collected from precancerous as well as various stages and groups of cervical cancer, (a) Ponceau staining of blots shows the protein profile of various urine sam ples, (b) Western blot analysis shows the shedding of NCB antigen in urine, where Lane 1 to 5 CaCx: Different stages of cervical cancer; Lane 5 & 6 Rec: Recurrence cases of cervical cancer; Lane 8 & 9 Tre: Follow-up under treatment patients; Lane 10 to 14 CI N: Different CI N stages; Lane 1 5 andf 16 UH: abnormal pap and unhealthy but noncancerous cervix.
Figure 6 Shows the dimensional geometry of 3D printed device, (a) shows (i) I sometric (ii) Front (iii) Bottom (iv) Left (v) Right (vi) Top view of the 3D printed ndevice ( 1 00) . (b) shows (i) Isometric (ii) Front (iii) Top (iv) Bottom (v) Left (vi) Right view of the cuvette housing ( 101 ) part of the 3D printed device, (c) shows (i) I sometric (ii) Left (iii) Right view of the LED housing ( 1 02) part of the 3D printed device and the schem atic diagram of the LED ( 103) . (d) shows (i) I sometric (ii) Left (iii) Right (iv) Top view of the photodetector casing ( 104) part of the 3D printed device and the schem atic representation of the photodetector, TSL2561 ( 105) . (e) shows (i) I som etric (ii) Bottom (iii) Top view of the cover of the cuvette ( 1 06) .
Figure 7 Depicts the UV-Visible spectroscopy results for (a) pristine gold nanoparticles (AuNPs - brown dashed line) , AuNPs after DTSP attachment (solid traffic green line) , Antibody (Ab) attached DTSP linked AuNPs (blue square symbols) , and after Antigen (Ag) attachment (protein separated from cervical cancer patients’ urine) on Ab linked on the AuNPs (pink dash-dot line) , (b) pristine AuNPs (blue dashed line) , DTSP linked AuNPs (traffic green dash-dot line) , Ab attached DTSP linked AuNPs (red triangular symbols) , and after Ag attachment (urine sample) on Ab-AuNPs composite (violet dash-dot-dot line) , (c) shows change of UV-Vis absorbance intensity along with gradual blue shifts of spectra on successive additions of urine with respect to Ab stabilized on DTSP linked AuNPs absorption intensities. Legends 1 to 3 in the image (c) represent absorptions of AuNPs, AuNPs linked DTSP, and Ab stabilized on DTSP linked AuNPs, respectively.
Figure 8 Depicts the results of the interference study. Plot (a) shows UV- Vis spectra of AuNPs (black line with red box) , DTSP immobilized AuNPs (solid light green line) , Ab stabilized AuNPs (blue triangular symbols only) , and on addition of increasing amounts of cervical cancer patient’s urine sample (other lines after blue triangular symbols) to Ab stabilized AuNPs. Plot (b) shows UV-Vis spectra of DTSP im mobilized AuNPs (solid light green line) , Ab stabilized AuNPs (blue triangular symbols only) , and on the addition of different amounts of healthy urine sample (other lines after blue triangular symbols) to Ab stabilized AuNPs. Plot (c) shows the UV-Vis response of Ab im mobilized AuNPs (blue triangular symbols only) on addition of different amounts of healthy patient’s urine sample (lines below the blue triangular symbols) , initially, and on subsequent addition of increasing amounts of cervical cancer patient’s urine sample (lines above the blue triangular symbols) in comparison to DTSP immobilized AuNPs (solid light green line) , and Ab stabilized AuNPs (blue triangular symbols only) .
Figure 9 Depicts the change in intensity and wavelength shift obtained from UV-Visible spectroscopic analysis of ten affected patients’ urine samples. Plot (a) shows the hypsochromic shift of the UV-Vis spectra observed after the addition of ten different cervical cancer affected patients urine samples to the Ab stabilized AuNPs solution. Plot (b) shows the normalized intensity of absorbance of the UV-Vis spectra observed after the addition of ten different cervical cancer affected patients’ urine samples to the Ab stabilized AuNPs solution.
Figure 10 Shows the circuit diagram of the electronic transducing set up. The image shows a microcontroller (Arduino Uno R3, ATmega328p) at the center, to the right of which, is a resistor (R) of 1 k and an LED (D) . To the left of the m icrocontroller is the photodetector (TSL2561 ) and a display (OLED) .
Figure 1 1 Depicts Mass spectrometry analysis showing the purity and integrity of NCB synthetic peptide of 23 am ino acids (Mol wt ~ 2.5 kDa) .
Figure 12 Depicts the calibration curve obtained from the developed portable POCT device for cervical cancer detection.
DETAI LED DESCRI PTI ON OF THE I NVENTI ON
The present invention thus discloses a biomarker sensor for specific sensing of cervical cancer and a non-invasive, POCT device facilitating biomarker based cervical cancer detection system . The said system involves identification of cervical cancer biomarker, ( PP1Y2) , from the urine sample of a patient. The said system is based on the detection of the intensity change due to the variation in the refractive index at the surface of a Localized Surface Plasmon Resonance (LSPR) system owing to lock-and-key interaction of antibody and antigen. The present invention also claims the development of a POCT system comprising one optical source, one photodetector, and metal nanoparticle-based sensor. The said system comprises of an LSPR optical source, a dedicated photodetector and a geometrically confined cuvette placed in between the LSPR optical source and the photodetector. The cuvette is filled with the synthesized sensor material for the LSPR detection of the said target protein. The sensor comprises the colloidal solution of modified metal nanoparticles, particularly for the detection of the targeted protein biomarker.
The mentioned terms shall have the meaning as described below,
As used herein, the term ‘biological sample’ is a body sample that can be used as an analyte to detect various biomarkers of certain diseases. A biological sample includes, but is not lim ited to, urine sample, cervical tissues, cervical sections, or biopsies of the cervix.
As used herein, the term ‘cervical cancer’ refers to the development of neoplasia or the abnormal growth of a mass of carcinogenic tissues in the cervix or cervical regions of a female.
As used herein, the term ‘biomarker’ refers to the naturally occurring molecule or gene or any characteristic by which a particular disease or pathological imbalance can be measured.
As used herein, the term ‘cervix’ refers to the lower region of the uterus of a female reproductive system which encompasses uterine cervix, endocervix, and ectocervix.
As used herein, the term ‘cervico-vaginal fluid’ means the fluid collected from the excretion of the cervical tissues of a female. As used herein, the term ‘antibody refers to the protective protein formed by the immune system of the body in response to any invasion from foreign body known as an antigen.
As used herein, the term ‘protein’ refers to a chain of am ino acids.
As used herein, the term LED refers to light-emitting diode, which is an LSPR optical source used in the developed apparatus.
As used herein, the term photodiode refers to an optical detector, which changes its electrical properties when exposed to a light source.
As used herein, the term cuvette refers to a container made up of a transparent material such as glass, used in the developed apparatus to hold the sensing material.
As used herein, the term POCT refers to the reported point of care testing device, which is portable in nature and is aimed to provide easy and real time diagnosis of the disease.
The present invention as discussed herein before discloses PP1 Y2 as a novel biomarker for the diagnosis of cervical cancer. A number of results generated in line with the clinically verified healthy and cervical cancer affected subjects have revealed that the expression level of PP1 Y2 increases in all cases of cervical neoplasia. The increased expression level of PP1 Y2 was also found throughout various stages of cancer of the cervix. The expression of the reported NCB was verified in the cervico-vagmal fluid (CVF) samples collected from clinically confirmed cervical cancer patients affected with various stages of cervical cancer. The reverse transcriptase polymerase chain reaction (RT-PCR) results of the RNA, extracted from the CVF samples collected from the cervical cancer affected patients, showed an elevated level of the reported NCB in all of the clinically confirmed cervical cancer cases.
Figure 1 shows the results of RT-PCR. The expression of NCB-PP1 Y2 was also validated in CVF samples of the patients having unhealthy but noncancerous cervix and also in the cases of patients showing recurrence of cervical cancer. The RT-PCR results of such cases show a dim inished intensity of the bands as compared to the intensity of the bands obtained for various stages of cervical cancer cases. Apart from RT-PCR, I m munofluorescence (I F) technique was also implemented to test the presence of the claimed NCB in the CVF samples collected from the clinically confirmed cervical cancer cases, as shown in Figure 2. The results show that the CVF samples containing NCB, confirmed a positive imm une-reactivity when incubated with anti-NCB antibodies. However, the CVF samples where NCB is absent, no imm une-reactivity against anti- NCB antibodies was observed.
I n another study, the presence of NCB was tested for the CVF samples, which were clinically confirmed for the presence of HPV infection. Co- imm uno localization of NCB and HPV for various stages of cervical cancer patients was done using dual im munostaining technique, as shown in Figure 3. The results show positive im m uno-staining for both NCB and HPV in the collected CVF samples, indicated by red and green stain, respectively in the figure shown and blue is nucleus stained with DAPI . Therefore, it can be concluded that the reported NCB is expressed in all the cases where HPV infection was clinically confirmed.
Present invention is related to the detection of the NCB, PP1 Y2, in the urine samples of cervical cancer patients. For this work, urine samples were collected from different stages of clinically confirmed cervical cancer patients. Urine samples were also collected from patients having abnormal but noncancerous cervix and the patients showing recurrence of the disease. Two healthy individuals were also tested for the existence of NCB in the respective urine samples. The results of the testing are shown in Figure 4. Overall level of secretary proteins was negligible in healthy individuals as evident from coomassie and ponceau staining shown in Figure 4(a) and Figure 4( b) , respectively. No detectable signal of bands corresponding to NCB could have been observed in case of healthy volunteers whereas very intense bands were observed in cervical cancer patients when probed with anti-NCB specific antibodies. This data indicated that the anti-NCB antibody is specific to the claimed NCB and the Western Blot technique is efficient for the identification of the discovered protein.
The expression of the said NCB was exam ined in the urine samples of a number of subjects using the Western Blot technique, as shown in Figure 5. The results obtained from the Western Blot technique shows that the said NCB is found in all the clinically confirmed cervical cancer cases. It also shows that high-intensity bands were obtained for different stages of cervical cancer patients as compared to the intensity of the bands obtained for different CI N stages, patients showing recurrence of the disease, and also for the patients having unhealthy but noncancerous cervix. The above results show that the NCB is a potential biomarker for the early identification of precancerous and cervical cancer cases from the urine samples of the subjects.
It is evident that the diagnosis of cervical cancer by painless non-invasive pathway is elusive for quite a long period. The said urinary protein, PP1 Y2, which is specific to cervical cancer, is targeted to develop an LSPR based device exploiting antigen-antibody interactions for an easy diagnosis of cervical cancer. Liquid phase LSPR technique further offers promising homogeneity of the solution and material light interactions in order to enhance the specificity and selectivity of sensing.
Figure 6(a) ( i-vi) refers to the developed three-dimensional (3D) apparatus for the detection/quantification system for cervical cancer diagnosis. The sensing system ( 100) is made up of a reusable 3D printed apparatus. Figure 6( b) ( i-vi) shows a housing ( 101 ) placed at the m iddle of the 3D printed set up ( 100) to hold the cuvette. Figure 6(c) ( i-iii) shows an optical source chamber ( 102) of the 3D printed set up ( 100) , to place the Light Emitting Diode (LED) ( 103) . Figure 6(d) ( i- iii) an optical detector chamber ( 104) at the other end of the 3D printed set up ( 100) , to house the photodetector ( 105) . Figure 6(e) ( i-iii) shows the cuvette cover ( 106) used for capping the cuvette to minim ize the interference of undesired external light. The transducing system composes a central processing unit, which contains a microcontroller, accessory units like resistor, and a digital user interface. The optical source, photodetector unit, m icrocontroller, and the display can be electrically powered either by a portable rechargeable battery, low voltage power outlet system , or a combination of both. The optical source can be a simple LED, or a controlled high-power laser, or any other suitable light source. The optical detector unit is any visible range photodetector module such as silicon photodiodes. The digital user interface unit can be any available display for example a Liquid Crystal Display, or an Organic Light Em itting Diode (OLED) display.
I nitially, the reagent, which is a suitable solution containing antibodies specific to NCB is taken into the cuvette. The chosen cuvette is of standard dimensions (1 cm x 1 cm) . Subsequently, the test sample, either a solution containing the required antigen or urine sample collected from the patients’ having cervical cancer, is dropped to the cuvette externally by some suitable quantifiable transfer unit such as a m icropipette, or a graduated dropper. The analyte solution or the urine sample should be mixed well before use to confirm the homogeneity of the solution. After pouring the sample into the cuvette, it can directly be placed in the 3D printed housing. Once the cuvette is placed into the housing, the light source and the microprocessor board can be turned on using a suitable power delivery source, as mentioned previously and the cuvette is covered with the cuvette cover mentioned. The said device works on the transm ission mode. Hence, the light com ing out of the light source can directly be passed through the cuvette containing the material to be sensed, and during the passage, a fraction of the incom ing light is expected to be absorbed by the solution inside the cuvette.
The extent of absorption would proportionally vary with the concentration of the targeted NCB present in the analyte used. The light left out after the absorption is to fall on the photodetector, fixed at the other end of the developed 3D printed device. The amount of light falling on the detector can be digitally read with the help of a m icrocontroller-based central processing unit. Further, programm ing can be set into the microcontroller to digitally process the incom ing light intensity data into the corresponding concentration of the target protein present in the analyte used. A number of known concentrations or volume of test samples has been tested with the fabricated device to generate a calibration curve for the quantitative estimation of the test sample.
The reagent that is used for the LSPR based sensing is made of metal nanoparticles such as gold with the subsequent attachment of specific anti-NCB antibody by any chem ical or physical attachment procedures. Further, the metal nanoparticles solution is prepared from a precursor salt. The precursor salt is advised to dissolve in Milli-Q water to prepare a relatively low and suitable concentration. Henceforth, a suitable reducing agent such as Sodium Borohydride or Trisodium citrate can be used to synthesize metal nanoparticles from the precursor solution. The synthesis should be done under constant stirring with a suitable stirring rate to control the size of the synthesized metal nanoparticles. Optim ization of synthesis parameters is required for synthesizing appropriate metal nanoparticles. Subsequently, anti-NCB antibodies, specific to the targeted protein, can be attached to the surface of the metal nanoparticles. A chem ical linker such as DTSP is used for the attachment of antibodies on the surface of metal nanoparticles. After the attachment, the solution should be kept in a suitable environment, under low specific temperature such as 4SC for further use.
The sensitivity of the developed sensor was exam ined with the help of UV-Visible spectrophotometer, and the results are shown in Figure 7. The metal nanoparticles solution was taken at first in a cuvette, and the UV- Vis absorbance response was examined. Afterward, UV-Vis absorbance spectrum was examined for the anti-NCB antibody stabilized metal nanoparticles solution and on the addition of the analyte on the antibody stabilized metal nanoparticles solution. Two types of analytes were used for the study are: the total protein separated from the urine samples of the clinically confirmed cervical cancer affected patients and the crude urine samples collected from the clinically confirmed cervical cancer affected patients.
On addition of the total separated protein to the anti-NCB attached metal nanoparticle solution, an increase in UV-Vis absorbance intensity with a concurrent hypsochromic shift was observed, as shown in Figure 7(a) . The results in Figure 7(b) show the increase in UV-Vis absorbance intensity with a significant hypsochromic shift observed on the addition of 300 pL of crude urine sample collected from the clinically confirmed cervical cancer patients. The results in Figure 7( c) show a monotonic increase in the intensity of the UV-Vis absorbance spectra with concurrent hypsochrom ic shift on increasing the volume of the crude urine samples added on the antibody stabilized metal nanoparticles solution.
The increase in the intensity of the absorbance spectra with concurrent hypsochrom ic shift is found to be a cause of the LSPR phenomenon. The increase in the intensity of the absorbance spectra is probably due to significant electronic changes occurred in the optical properties on the surface of metal nanoparticles owing to the interacting antibody and the reported NCB. The hypsochromic shift observed is hypothesized as a reason for charge accumulation on the surface of metal nanoparticles owing to antigen-antibody interaction. The selectivity of the sensor was studied by examining the interaction of the anti-NCB antibody with proteins other than the claimed NCB. The results of the interference study are shown in Figure 8. For the interference study, healthy volunteers’ urine samples, individuals not affected by cervical cancer, were collected and considered for the study. Figure 8(a) shows the increase in the intensity with subsequent hypsochrom ic shift (lines above blue triangular symbols and below red squared black line) on the addition of increasing volume of crude urine samples collected from the clinically confirmed cervical cancer patients to the anti-NCB attached gold nanoparticles solution (blue symbols) . Figure 8( b) shows the UV-Vis absorbance results obtained after the addition of crude urine samples collected from healthy volunteers (lines above solid traffic green colored line and the blue symbols) , to the anti-NCB attached gold nanoparticles solution. The results in Figure 8(c) the difference in the UV-Vis absorbance properties on the addition of healthy as well as affected patient’s crude urine samples to the same sensor solution. It was observed that when a heathy patient’s urine sample was dispensed to the sensor solution, there was neither any increase in intensity nor was any hypsochrom ic shift. However, on the addition of the cervical cancer affected patient’s crude urine sample to the same sensor solution, both the increased intensity and hypsochromic shift properties of the LSPR phenomenon were observed. The results show that the LSPR property, as described above, of the metal nanoparticles is observed only for the cases containing NCB in the analyte whereas no such LSPR property, neither increase in the intensity of the absorbance spectra nor the hypsochrom ic shift, was observed in the healthy volunteers’ urine sample where the claimed NCB is absent. A total of ten (10) clinically confirmed cervical cancer patients crude urine samples were tested with the developed sensing technique. I nterestingly, all the affected cases showed LSPR phenomenon in UV-Vis spectrophotometer, as shown in Figure 9. Figure 9(a) shows the hypsochrom ic wavelength shift observed for ten different cervical cancer affected patient’s crude urine samples, when added to the sensor solution. Figure 9( b) shows the increased in intensity of the UV-Vis absorbance observed in the same experiment. The plot depicts that different cervical cancer patient’s urine samples show different LSPR effect. This is probably due to the presence of different concentrations of the NCB in various cervical cancer affected patients’ urine samples owing to different stages of cervical cancer and/or probably due to different concentrations of urine at different times of a day based on the metabolic activity of the patient.
Therefore, the above studies demonstrate that the sensing technique proposed in the present work is competent enough in identifying the claimed NCB and thus can be recom mended for the diagnosis of cervical cancer.
The illustration of various techniques and embodiments preferred for the present invention are mentioned as experimental studies in the below section. However, it should be noted here that the descriptions stated do not lim it the scope of the present invention, as attributed in the claims. Further modifications could be intended within the scope and spirit of the invention.
EXPERI MENTAL STUDI ES Exam ple 1 : Evaluation of NCB transcript in Cervico-vaginal fluid ( CVF)
Cervico-vaginal fluid (CVF) was collected from the early as well as advanced stages of the clinically confirmed cervical cancer patients, and total RNA from the sample was extracted. Expression of NCB transcript was checked in these samples through conventional Reverse Transcriptase-Polymerase Chain Reaction (RT-PCR) using NCB specific primers. Figure 1 shows the expression of NCB transcript in the cervico- vaginal fluid collected from clinically confirmed subjects of cervical cancer and various CI N stages. Here, -actin is used as internal control for the reaction.
Detailed results for the expression of NCB in various clinically confirmed CVF samples tested with RT-PCR have been sum marized in Table 1 . A total of 1 15 patients were considered for the exam ination of the CVF through RT-PCR. It was found that out of fifty (50) clinically confirmed cervical cancer cases, forty-one (41 ) samples (82%) expressed NCB through RT-PCR of the CVF samples. Out of twenty-five (25) clinically verified CI N cases, NCB was detected in fifteen ( 15) cases (60%) through RT-PCR of the CVF samples. I n a similar test, CVF samples of four (4) out of ten ( 10) (40%) treated patients and three (3) out of five (5) patients having recurrence of the disease, showed the existence of NCB when tested with RT-PCR of the CVF samples of the respective patients. I n contrast, eleven (1 1 ) out of twenty-five (25) CVF samples of the patients having abnormal noncancerous pap was tested positive for the presence of NCB in the CVF sample.
Table 1 : Detailed results along with clinico-pathological status of clinical CVF samples positive for the expression of NCB.
Figure imgf000032_0001
These results demonstrate that the transcript expression of NCB (~ 205 bp) was observed in all the clinically confirmed cervical cancer samples. High-intensity band signal was also observed in different CI N stages as well as faint bands were detected in fluid collected from unhealthy cervical conditions. The data indicate that the claimed NCB is frequently expressed in precancerous as well as different stages of cervical cancer.
Exam ple 2 : Assessment of NCB protein expression in Cervico- vaginal fluid by I m m unofluorescence technique
The expression of NCB at the translational level in the CVF collected from the clinically confirmed cervical cancer patients was evaluated using the indirect im muno-fluorescence technique. Slides were prepared from the CVF, and after processing, it was incubated with anti-NCB specific antibody for immunostaining. The results in Figure 2 demonstrate NCB expression at the translational level in the CVF samples of cervical cancer patients. The immunofluorescence photo-micrograph indicates that the control set did not show any immune-reactivity when incubated without anti-NCB primary antibody.
Exam ple 3 : Co-1 mm unostaining of NCB and HPV in the CVF of Precancerous and various stages of cervical cancer subjects
Co-immuno-localization of NCB and HPV in the CVF collected from precancerous as well as various stages of cervical cancer patients was done using dual im munostaining technique. CVF slides were probed with specific anti-NCB and anti-HPV primary antibodies. HPV antibody was against the consensus region of E6 oncoprotein of HPV 16 and 18 strains. Positive immuno-staining was observed for both NCB and HPV in the patient samples, which is indicated by red and green stain respectively in Figure 3 and blue color indicates nucleus stained with 4' ,6-diamidino-2- phenylindole (DAPI ) . Photo-micrographs in the figure show co-expression of NCB and HPV in the cervico-vaginal fluid samples collected from early (CI N I I) , advanced stages of cervical cancer patients CaCx I B, HA, 111 B, and negative sample. The data indicate that NCB is found in different stages of cervical cancers where the HPV infection is also present. Hence, it can be concluded here that the claimed protein is co-expressed with HPV infection even in precancerous and early stages of cervical cancer.
Exam ple 4 : Exam ination for the secretion of PP1 Y2 protein in urine sam ples w ith Western Blot technique
Protein extracted from a biological fluid, urine sample, of the patient, were denatured with Laemm li buffer containing 10% Betamercaptoethanol (BME) by heating of samples at 95°C for 10 min on a hot plate. Now the denatured protein samples were loaded (30 g) in each well of 12.5% SDS-PAGE gel, and then the gel was electrophoresed in a Tris-Glycine and SDS buffer system at a constant voltage i.e. 50 V. The proteins separated through SDS-PAGE were transferred onto nitrocellulose membrane by electro-blotting. The blotted membrane was stained with ponceau stain to visualize the blotted proteins. Now the membrane was washed with 1 X Phosphate buffer saline (PBS) buffer and kept for blocking in 2% Bovine serum albumin (BSA) in 0.1 % Phosphate buffer saline with Tween-20 (PBST) buffer for 1 h over rocker shaker at room temperature (25°C) . The blot was then incubated with NCB specific primary antibody at certain standardized dilutions (1 :3000) for overnight ( 12- 14 hours) at 4°C. The membrane was then washed with 0.1 % PBST for three times and with 1 X PBS twice. Now secondary antibody tagged with horseradish peroxidase (HRP) was added, at a standardized dilution ( 1 :5000) for 4 h at room temperature (25°C) . Thereafter, the membrane was washed with 0.1 % PBST thrice followed by 1 X PBS twice. Further, protein blots were developed through chem ilum inescence reagent and the developed protein bands were detected through Chemidoc showing signals corresponding to the protein of interest.
Figure 4 shows the comparison of the total excreted proteins and the presence of the claimed NCB in the urine samples of the healthy and cervical cancer affected patients. Here, P1 is represented for the urine sample of the patient undergoing recurrence of cervical cancer; P2 is represented for the urine sample of the patient affected by cervical cancer stage 111 B; UH is represented for the urine sample of an unhealthy patient with abnormal pap but noncancerous cervix; F1 & F2 is represented for healthy female urine sample. Figure 4(a) shows the Coomassie Brilliant Blue staining to visualize the protein bands in the 12.5% acrylamide gel after the Electrophoresis. Figure 4( b) shows Ponceau (Pink) staining of protein bands on the nitrocellulose m embrane after electro-blotting (transfer of protein from SDS-PAGE gel to nitrocellulose membrane) of various urine samples obtained in Figure 4(a) . Figure 4(c) depicts the specific bands on the membrane which was probed with anti-NCB specific primary antibody followed by enzyme tagged secondary antibody and finally developed with substrate using chem iluminescence method to produce the specific signal showing the existence of NCB antigen in the urine sample of cervical cancer. I n sum , these data indicate that PP1 Y2 is not present in the urine sample of healthy individuals but gets secreted in cervical cancer patients as evident from the western blot results. These results signify that the NCB is a definite protein found in the urine samples of the cervical cancer affected patients.
Similarly, western blot study was done with urine samples collected from different stages of cervical cancer patients, recurrence of cervical cancer (Rec) , patients undergoing follow-up treatment (Tre) , various stages of precancerous (CI N) , and patients with unhealthy cervix but noncancerous conditions (UH) and examined for the existence of the NCB. Figure 5 shows the results of the detection of NCB in the urine samples collected from various stages and groups of cervical cancer patients. Figure 5(a) shows the ponceau stained protein bands and Figure 5( b) shows the western blot results. The data shows that the intensity of protein band for NCB is not equal for all the cases examined. The variation in the intensity of the NCB bands observed in the WB results, allows distinction of different stages and groups of cervical cancer. It was observed that the intensity of the protein band in UH is less intense as compared to the advanced and other stages of cervical cancer.
The details of urine samples collected and tested for NCB through WB is summarized in Table 2. The samples were confirmed by the clinicians from King George Medical University, Lucknow for the cancer and their stage.
Table 2 : Details of urine samples tested for NCB through WB.
Figure imgf000035_0001
Figure imgf000036_0001
The table data show that none of the healthy urine samples was tested positive for the presence of NCB, which is in line with the clinical results for healthy samples. I n contrast, for different stages of cervical cancer, the positivity of NCB presence was found to be much higher such as for IA/I B stage of cervical cancer, four (4) out of the five (5) clinically confirmed cases were found to be positive with NCB in WB (80%) , for I IA/I I B stage, thirty-nine (39) out of the forty-two (42) clinically confirmed cases were found to express NCB in WB (92%) , and for 111 A/ 111 B stage, thirty-one (31 ) out of thirty-three (33) clinically verified cases were found to have high levels of NCB (93%) expressed in WB results of the urine samples.
Similarly, for CI N l l/l l l cases, forty-three (43) out of fifty (50) clinically positive cases showed detectable levels of NCB presence (86%) in WB study. Out of fifteen ( 15) clinically assured cases of patients undergoing treatment for cervical cancer, eleven ( 1 1 ) cases showed presence of NCB in WB. For recurrence cases, all the five (5) clinically verified cases were found to be positive with NCB in WB ( 100%) . For patients with abnormal cervix but noncancerous conditions, twenty-two (22) out of the thirty (30) clinically confirmed cases showed a light band in WB.
I n summary, the results shown above suggest that PP1 Y2 protein levels were elevated in urine samples of the cervical cancer patients. The increased level of PP1Y2 protein could be detected in the patients urine samples as early as in CIN I, thus providing an opportunity for early diagnosis of the disease. PP1Y2 protein expression was also examined in CVF samples through RT-PCR and urine sample through WB in patients inflicted with cervical intraepithelial neoplasia (CIN), various stages of cervical cancer (CaCx), patients undergoing treatment (Tre), patients showing recurrence of the disease and cases of abnormal noncancerous cervical pap.
Table 3 shows comparative results of the CVF samples tested through RT-PCR and urine samples of the same set of patients through WB for the assessment of NCB appearance profile, simultaneously. A total of fifty-two (52) patients were enrolled for this study, and both CVF and urine samples were collected from the cervical cancer sites of the respective subjects. Twelve (12) patients were clinically confirmed stage IIA/IIB cervical cancer, ten (10) patients from stage 111 A/l 11 B cervical cancer, and thirteen (13) patients infected with CIN ll/lll stage. Seven (07) patients undergoing treatment for the disease were clinically found to be positive with cervical cancer. Two (2) patients were clinically diagnosed with a recurrence of cervical cancer, and eight (08) patients were found to have abnormal but noncancerous pap.
Table 3: Comparative results of the CVF samples.
Figure imgf000037_0001
Figure imgf000038_0001
Out of twelve (12) stage I IA/I I B cervical cancer patients, only six (06) (50%) patients showed the presence of NCB in respective CVF, examined through RT-PCR. I n contrast, the presence of NCB was confirmed in urine samples of eleven ( 1 1 ) (92% ) patients when examined through WB technique. Sim ilarly, out of ten (10) number of stage 111 A/ 111 B patients, NCB presence in CVF was found only six (06) (60%) patients, when examined through RT-PCR whereas the number increased to nine (09) (90%) when the NCB presence was examined in the urine samples of the patients using WB technique. Of all the thirteen (13) CI N l l/l l l cases, four (04) (31 %) patients’ CVF samples confirmed the presence of NCB in RT- PCR, whereas NCB was validated in urine samples of ten (10) (77%) patients through WB technique. Among the seven (07) patients undergoing treatment, two (02) (29%) showed the presence of the NCB in CVF in RT-PCR wherein the number was found to be six (06) (86%) when NCB examination was done with the urine samples of the respective patients through WB technique. For the two (02) recurrence cases, one (01 ) (50%) showed the presence of NCB in the CVF collected through RT- PCR, however both the two (02) (100%) urine samples expressed the presence of NCB in WB. Amid all the CVF and urine samples collected from eight (08) patients having abnormal non-cancerous pap, three (03) (31 %) CVF samples confirmed the NCB presence in RT-PCR. I n contrast, four (04) (50%) urine samples confirmed the presence of NCB in WB.
The clinical studies designed in the mentioned examination suggest PP1 Y2 as a reliable and sensitive biomarker dedicated for the early identification of the cervical cancer cases regardless of the stage of the development of the cancer. The above-mentioned data illustrate that PP1 Y2 is expressed in high percentages in the urine sample of the patients suffered from cervical cancer diseases, any stage or group, whereas the healthy volunteers’ urine samples do not express any PP1 Y2 protein. I n abstract, these data suggest that PP1 Y2 is a potential and reliable biomarker for cervical cancer.
Exam ple 5 : UV-Visible Spectrophotometer results of antibodyantigen interaction
UV-Vis spectrum of the gold nanoparticles was obtained by mixing 1 .5 m l of synthesized gold nanoparticles with 1 m L of Mili-Q water as shown in Figure 7(a) . Afterwards, UV-Vis spectrum of 1 .5 m L solution of chemical linker, DTSP, linked gold nanoparticles diluted with 1 m I of Mili-Q water were observed. Furthermore, 60 pl of anti-NCB antibody solution, prepared in PBST buffer was added to the DTSP linked gold nanoparticles. I n one study, 300 pl of total protein solution containing the protein of interest, which was separated from urine samples collected from clinically confirmed cervical cancer patients, was added, and the UV-Vis spectra were recorded, as shown in Figure 7(a) . I n another study, 300 pl of the crude urine samples collected from the clinically confirmed cervical cancer patient was added, and UV-Vis spectra were recorded, as shown in Figure 7( b) .
Figure 7(c) shows the variation in the absorbance intensity and the subsequent hypsochrom ic shifts with progressive addition of different volumes of the crude urine samples of the cervical cancer patient ranging from 20 pL to 300 pL. The experiment suggests as long as the unbound paratope sites are available on the anti-NCB antibodies present on the surface of the gold nanoparticles, the epitope site on the reported NCB, present in the affected urine sample, selectively binds to the antibodies on the gold nanoparticles via lock and key mechanism .
Exam ple 6 : I nterference study w ith healthy analyte using UV- Visible Spectrophotometer
An interference study was performed comparing the binding affinity of the anti-NCB with the reported NCB present in medically verified cervical cancer affected urine samples and healthy volunteer’s urine samples. UV- Vis spectroscopic response of the gold nanoparticles solution was taken by adding 1 .5 m L of the synthesized gold nanoparticles solution with 1 m L of Milli-Q water. Afterward, UV-Vis spectrum was recorded for 1 .5 m L of DTSP linked gold nanoparticles solution diluted with 1 m L of Milli-Q water. To this solution, 60 pL of anti-NCB antibody solution, prepared in PBST buffer, was added, and the UV-Vis spectrum was recorded. Furthermore, different volumes of the required analyte were added to the anti-NCB antibody stabilized gold nanoparticles solution, and the UV-Vis spectra were recorded.
Figure 8(a) shows the UV-Vis spectrophotometric response for the interaction of anti-NCB antibodies with cervical cancer affected patients’ urine samples (where the complimentary antigen, NCB, is present) . The results show the LSPR effect on the addition of different volumes of cervical cancer affected patient’s urine sample to the solution containing anti-NCB antibodies stabilized gold nanoparticles solution. On the contrary, after the addition of the healthy volunteer’s urine sample (collected from a healthy woman, where the complementary antigen is absent) to the anti-NCB antibodies stabilized gold nanoparticles solution, no such LSPR effect was observed as it can be depicted in Figure 8( b) . The results in the plot show either a decrease or no significant change in the intensity of the absorbance spectra on the addition of the healthy urine samples. This is probably due to the absence of any interaction between the reported NCB, which is absent in a healthy urine sample, with the corresponding anti-NCB antibodies stabilized on the gold nanoparticles.
Figure 8(c) shows the UV-Vis spectra obtained after the addition of cervical cancer affected patient’s urine samples and healthy volunteer’s urine samples alternatively. The results show that the developed sensor responds only if the analyte contains the reported NCB, as the intensity of absorbance increases, with respect to the UV-Vis spectrum for antibody stabilized gold nanoparticles solution, in that case only, whereas it is not sensitive towards healthy volunteer’s urine sample, as the intensity is not changing with respect to the UV-Vis spectrum for antibody stabilized gold nanoparticles solution.
Here, it can be depicted from the spectra that on the addition of cervical cancer positive patients’ urine sample to anti-NCB antibodies stabilized gold nanoparticles solution, the antibodies bind to the particular NCB of interest present in the urine sample. This lock-and-key binding shows an LSPR shift with a parallel intensity increment. However, no such response of LSPR or intensity increment was observed on addition of healthy patient’s urine sample due to absence of the claimed NCB to which the anti-NCB antibodies are supposed to bind. Thus, from the above results, it can be concluded that the proposed sensing technique is potentially capable of identifying cervical cancer patients, non-invasively from the urine sample of the patients. Exam ple 7 : Case study w ith cervical cancer positive urine sam ples A case study with ten (10) different clinically confirmed cervical cancer affected patient’s urine samples (U1 -U10) was done with the developed sensing technique, as shown in Figu re 9. It was observed that all the cases show the LSPR effect on the addition of the affected patient’s urine sample on the anti-NCB stabilized gold nanoparticles solution.
Figure 9( a) shows the hypsochromic change (A^) observed due to LSPR effect on the addition of the affected patient’s urine sample on the anti- NCB stabilized gold nanoparticles solution for ten (10) different urine samples (U1 -U10). The A was calculated by measuring the difference in the wavelength between the peak of UV-Vis spectra of the anti-NCB antibodies stabilized gold nanoparticles and the peak of the UV-Vis spectra after the addition of the cervical cancer affected patient’s urine sample.
Figure 9( b) shows the change in the intensity of the absorbance spectra (AN) observed due to LSPR effect on the addition of the affected patient’s urine sample on the anti-NCB stabilized gold nanoparticles solution for ten ( 10) different urine samples (U1 -U10) . The AN was calculated by measuring the difference in the intensity of absorbance observed for the UV-Vis spectra of the anti-NCB antibodies stabilized gold nanoparticles solution and the intensity of the absorbance observed for the UV-Vis spectra after the addition of the clinically confirmed cervical cancer patients’ urine sample.
Exam ple 8 : Transm ittance based POCT System for quantification of NCB The detailed description of the transmittance-based system for quantification of the biomarker of interest is as follows,
(a) The detection unit comprises of a glass cuvette filled with the transformed sensing solution wherein the mentioned anti-NCB antibodies are expected to interact with the protein of interest present in the analyte to generate quantifiable optical signal corresponding to the concentration of the protein present in the analyte.
(b) The three-dimensional (3D) design of the developed optoelectronic device, as shown in Figure 6, shows the components of the developed apparatus. It consists of a sample stage ( 101 ) an optical transduction set up ( 102) , ( 103) , ( 104) , ( 105) , and a signal processing unit programmed to convert the incom ing signals for display,
(i) wherein Figures 6(a) ( i-vi) represents the isometric, front, bottom , left, right, top view of the aforementioned developed apparatus;
(ii) wherein the sample stage ( 101 ) ( Figures 6( b) ( i-vi)) is arranged to place the glass cuvette holding the sensor solution;
(iii) wherein the optical transduction set up comprises of an optical source housing ( 102) ( Figures 6( c) ( i-iii)) to hold the LSPR optical source such as a LED ( 103) , an optical detector chamber ( 104) ( Figures 6(d) ( i-iii) ) to hold the optical detector such as photodetector ( 105) along with a glass cuvette placed in between the optical source and the photodetector;
(iv) wherein the optical source illum inates the sensing material held by the glass cuvette, and the output transm itted signal is collected by the photodetector arranged in the apparatus set up;
(v) wherein the signal processing unit comprises of a microcontroller which is programmed to process the incoming transm itted analog signals from the photodetector to convert it into digital signals which is then displayed for easy legibility of the end user. The m icrocontroller is also commanded with calibrated data of various concentration of the protein to be identified, obtained experimentally, to measure the correct level of the protein of interest exists in the analyte examined.
The detailed component arrangement of the optical transduction set up is shown in Figure 6. Here, black polymer is used to design the entire casing of the device to create dark environment in order to m inimize the interference of external diffused light on the sensing set up. Two hollow spaces are arranged to mount the optical source, such as LED and the photodetector. The holes to house the LED and the photodetector are done in accordance with the dimensions of the component used. Along with these, a frame for positioning the glass cuvette is also arranged in the apparatus set up. The optical source is connected to a power supply such as battery through a resistor. And the photodetector is connected externally to the signal processing unit.
The signal processing unit is developed employing the open source Arduino Uno R3 development board. It consists of Arduino I ntegrated Development Environment (I DE) software platform used for programm ing and interfacing Arduino board with the external circuitry through m icrocontroller fitted with the Arduino Uno R3 board. The microcontroller embedded is ATmega328p and is fitted with command to convert the analog input signals from the photodetector to digital output readings.
The ATmega328p m icrocontroller of the Arduino Uno R3 board consists of 6 analog pins and 14 digital pins used as input or output pins. It is regulated at 16 MHz clock pulse using ceramic resonator. Also, it has a USB jack which can be used both as a power supply unit and for uploading the program . It has 10-bit ADC (Analog to Digital Converter) for digitizing the analog input from the photodetector. The input from the photodetector is set to any analog pins on the development board.
The circuit diagram of the developed device is illustrated in Figure 10. The figure shows the internal circuitry of the open source Arduino Uno R3 development board to which the other components are interfaced. The positive end of the LED used is connected to the 5V pin of the Arduino Uno via a 1 k resistor and the negative pin of the LED is connected to GND pin of the Arduino Uno. For the connection of the photodetector included, two analog pins are required for inter IC (integrated circuit) connection. The serial clock (SCL) and serial data (SDA) , pins of the photodetector are connected to A4 and A5 pins of the Arduino Uno development board. The Vcc and GND pins of the photodetector are connected to the 3.3 V and GND pins of the Arduino Uno board. For the display board connection, the serial clock (SCL) and serial data (SDA) pins are connected to the A4 and A5 analog pins of the Arduino Uno board. And the Vcc and GND pins of the display are connected to the 3.3 V and GND pins of the Arduino Uno board.
Exam ple 9 : Experimental Methods and Protocols
I . Preparation of reagents
(a) Pre-treatment of crude urine sam ples
The mid- st ream 10-45 m L crude urine samples at any random time of the day were collected from the patients in 50 m L sterile conical centrifuge tubes and placed im mediately in the cool box. The samples were immediately transported to the lab. Further, the urine sample was filtered through the Whatmann paper (8 pm) to remove the m ucus and contaminant followed by the centrifugation at 1000* g for 5 m in at 4°C to remove any other contam inant left, which m ight not remove through filtration.
( b) Separation of NCB from urine sam ples
After centrifugation, supernatant was collected in another fresh tube, and an equal volume of pre-chilled acetone was added and incubated at -20°C for 40- 45 m in to mediate acetone precipitation followed by centrifugation at 12000* g for 5 min at 4SC. The supernatant was discarded, and the pellet was re-suspended with 100 L to 200 L of protein extraction RI PA buffer containing 1 X Protease and Phosphatase inhibitors. After protein quantification through Bradford assay, samples were aliquoted and stored at -80°C for further analysis.
( c) Synthesis of synthetic peptide specific of PP1 Y2
A peptide corresponding to 23 am ino acids specific to the C-term inal of NCB was synthesized commercially from LifeTein, LLC, Hillsborough, New Jersey, USA, for the antibody generation. Mass Spectrometry analysis was done to assess the integrity of the synthetic peptide as given in Figure 1 1 .
(d) Generation of Antibody in Rabbit
Synthetic peptide specific to the NCB protein i.e. PP1 Y2 was dosed to the female rabbit at optimized time point to raise the polyclonal antibodies in two female rabbits. Pre-immune sera were collected from these animals; afterward these animals were immunized with the first dose of 200 g of purified peptide with complete Freund’s adjuvant and boosted five times with 100 g of the same peptide at intervals of 7 days in incomplete Freund’s adjuvant. 500 L of serum was collected after every two dosages of peptide injection and the complete serum was collected from the final bleed, which was affinity-purified through the same synthetic peptide. The specificity of the affinity-purified antibody was tested against the 200 ng of this peptide and 50 g of mouse testis extract.
(e) Preparation of PBS Buffer
For 1 L 10X PBS, 25.6 g of Di-Sodium Hydrogen Phosphate (Na2HPO4.7H2O) , 80 g of Sodium Chloride (NaCI) , 2 g of Potassium Chloride (KCI) , and 2 g of Potassium Di-Hydrogen Phosphate (KH2PO4) reagents were dissolved properly in Milli-Q water and the final volume was made up-to1 litre. This 10X PBS buffer was stored at 4°C for further use and diluted to 1 X at the time of using this buffer.
(f) Preparation of PBST Buffer
PBST buffer was prepared by dissolving 0.1 % (v/v) of Tween-20 surfactant to the required amount of prepared 1 X PBS buffer, and 4°C storage condition was maintained.
( g) Preparation of Antibody Solution
1 % (w/v) Bovine Serum Album in (BSA) solution was prepared with a previously prepared PBST solution. 2.44 mg/m L stock solution of antibody was diluted, maintaining a ratio of 1 :3000 in freshly prepared 1 % BSA solution. The stock solution of the antibody (Reagent I ) was stored initially at -20°C. For dilution purposes, the antibody stock solution was thawed at 4°C. The diluted antibody solution was then kept again at - 20°C until further use.
( h) Preparation of Laem m li buffer
Laemmli sample buffer (2X) was prepared by using 100 m M of Tris HCL (pH 6.8) , 0.02% Bromophenol Blue, 20% p-mercaptoethanol, 2% Sodium Dodecyl Sulphate (SDS) and 20% Glycerol in double distilled/ RO water.
( i) Preparation of Tris-Glycine and SDS buffer system Tris-Glycine running buffer ( 1 X) was prepared by dissolving 25 mM Tris, 192 m M Glycine and 0.1 % SDS in double distilled/ RO water.
Transfer Buffer (2X) was prepared by dissolving 50 mM Tris Base, 384 m M Glycine, and 10% Methanol in double-distilled/RO water.
(j) Preparation of Rl PA buffer
Radio-im munoprecipitation assay buffer (RI PA buffer) was commercially purchased from Sigma Aldrich (Cat. No. R0278) .
( k) Preparation of gold nanoparticles solution
0.25 m M aqueous Tetrahydrochloroaurate ( HAuCI4) solution ( Reagent I I ) was prepared by dissolving 10 mg of HAuCI4 in 100 m l of Milli-Q water with stirring to mix the solution well. 0.1 M of aqueous reducing agent solution ( Reagent I I I ) was prepared by dissolving 0.38 g of Sodium Borohydride (NaBH4) in 100 m l of Milli-Q water. Afterward, 20 m l of Reagent I I was taken in a beaker and it was stirred at 1030 rpm in a hotplate. Then, 100 pL of Reagent 1 1 1 was added, drop-wise, to the stirring Reagent I I . The change in the color of the stirring solution from yellow to orange at first and subsequently to wine red in nearly 10 m in indicates the formation of gold nanoparticles. The gold nanoparticles solution ( Reagent I V) thus synthesized were stored at 4°C in an airtight container for further use.
( l) Preparation of DTSP ( 3,3'-Dith iodipropionic acid di( N- hydroxysuccinim ide ester) solution
DTSP solution of 5 mM strength was prepared by dissolving 2 mg of solid DTSP powder in 1 m L of Mill i-Q- water. For further usage, 1 : 10 dilution of the prepared DTSP solution in Milli-Q water was done. This diluted solution (Reagent V) was kept at 4°C in an airtight container for subsequent use.
1 1 . Preparation of sensor The preparation of the sensor goes through two processes, as mentioned below,
(a) Attachment of DTSP w ith gold nanoparticles
DTSP attached gold nanoparticles solution was obtained by adding 1300 pL of diluted DTSP solution (Reagent V) was added to 7 m L of gold nanoparticles solution ( Reagent I V) . This solution was kept in the dark for an hour and was then filtered using a syringe filter of 0.45 pm in diameter. The prepared solution of DTSP attached gold nanoparticles solution thus obtained ( Reagent VI ) was stored at 4°C for further use.
( b) Attachment of Antibody on DTSP attached gold nanoparticles solution
To obtain anti-NCB antibody attached DTSP capped gold nanoparticles ( Reagent VI I ) , 60 pL of the prepared antibody solution (Reagent I ) was added to 1 .5 m L of Reagent VI . The im mobilization of antibody on DTSP linked gold nanoparticles solution was confirmed with the help of UV-Vis spectroscopy. This solution was then stored at 4°C.
The Reagent VI is the required sensor used for further analysis of the analyte.
I I I . Procedure of testing an analyte
For testing the analyte for the presence of the protein of interest (NCB) , following steps were followed,
(a) 1 .5 m L of the sensor solution, Reagent VI , was taken into a glass cuvette.
(b) The sensor solution was illuminated with the optical source and the transmitted signal reading was observed from the device. This reading is counted as the baseline value for the exam ination of the NCB in the provided analyte. (c) After recording the baseline reading, 300 pL of the analyte (urine sample of the patient) is added to the cuvette containing the sensor solution and mixed well.
(d) Again, the transm itted signal reading of the analyte added sensor solution was recorded and examined for the positivity or the negativity of the test.
I V. Preparation of Calibration curve
I n order to map the variation in transmitted signal intensity with the concentration of NCB in the analyte, obtained from the developed device, a calibration curve was prepared, as shown in Figure 12 , by plotting the normalized transm itted intensity value to the amount of urine solution added to the sensor.
The calibration curve, mentioned in Figure 12 , shows the variation of the normalized intensity of the transm itted signal collected by the photodetector with the change in the amount of NCB present in the urine sample of the subject. The normalized transm itted intensity, as collected in the photodetector, is calculated by, lN = ( //-/,)/ /, where lN represents the normalized transm itted signal intensity, // represents the baseline transmitted signal intensity obtained by illuminating the sensor solution before addition of urine sample. If represents the transmitted signal intensity obtained by illum inating the sensor solution after the addition of urine sample.
It can be inferred from the calibration curve that the normalized transmittance intensity decreases with increase in the volume of the urine sample added to the sensor solution. The reason for such observations is as follows, initially when only the sensor solution was analyzed, where there is absence of NCB and thus there is no interaction of antibody and antigen takes place, the absorbance of incident light is low and hence the transmittance intensity is high. Sim ilarly, with the addition of NCB from the analyte to the sensor, the interaction between the antibodies stabilized on the sensor and the NCB from the urine sample of the patient which increases the absorbance of the incident light and thus the transmittance signal intensity decreases. The transmittance signal intensity decreases gradually with increase in the addition of NCB to the sensor solution until the phenomenon reaches a saturation point. The transmittance signal intensity obtained in the photodetector is then converted into legible signal is monitored by the signal processing unit as depicted in Figure 12.
As explained in Example 8, a calibration curve is fitted into the m icrocontroller system to map the increase in the volume of the urine sample collected from the cervical cancer affected subject, which is equivalent to the increase in NCB concentration, to the change in the normalized transm ittance signal intensity as observed in the photodetector arranged in the device. Thus, when the device reports any positive increase in the transmitted signal intensity on the addition of the analyte to the sensor solution, as compared to the transm ittance signal intensity of the pristine sensor solution without addition of analyte, the m icrocontroller is capable to process the incom ing signal, map it to the calibration curve and inform the severity of the disease.
Thus, the LED/LDR arrangement translates the variation in the LSPR signal of the liquid sample in the cuvette during the specific epitopeparatope antigen-antibody reaction into the variation in the intensity of the transmitted light. Subsequently, the presence of the marker and the amount of the marker can be quantified with the help of the variation in the intensity of the transm itted light, as discussed with the figures 9 and 12. I mportantly the low-cost POCT system/method was found to be at par with high end and costly UV-Vis spectra.
Thus, the present invention provides for a simple and cost-effective biomarker sensor specific sensing of cervical cancer through targeting PP1 Y2 biomarker and a non-invasive point of care testing (POCT) facilitating biomarker based cervical cancer detection system , which finds application for screening of cervical cancer non-invasively from the urine sample of the subject. Developed device will not only ease the tiresome process of conventional screening methods, but also simplify the need of the high skilled health care professionals and eradicate the boundaries of socio-econom ic lim itations.

Claims

W E CLAI M
1 . A biomarker sensor for specific sensing of cervical cancer comprising gold nanoparticles with capture molecules immobilized thereon exhibiting LSPR for target PP1 Y2 biomarker.
2. A biomarker sensor as claimed in claim 1 comprising anti-said PP1 Y2 biomarker antibody, which is specific towards the target PP1 Y2 biomarker, required to be detected in any biological fluid-based analyte including urine samples, as the said capture molecule, which is linked and immobilized on said gold nanoparticles.
3. A biomarker sensor as claimed in any one of claims 1 or 2 wherein said
PP1 Y2 biomarker antibody as capture molecule is linked and im mobilized on said gold nanoparticle involving antibody to gold nanoparticles linkers preferably selected from 3 ,3' - Dit h iod ipropion ic acid di(N- hydroxysuccinim ide ester) DTSP, 1 -Ethyl-3-(3- dimethylam inopropyl) carbodiimide (EDC)/N-hydroxysuccinim ide (NHS) , cystem ine, 3,3-Dithio- bis-(sulfosuccinim idyl) propionate (DSP) , 3,3' - Dithiobis (sulfosuccinimidyl propionate) (DTSSP ) and the like.
4. A biomarker sensor as claimed in any one of claims 1 to 3 comprising load of said PP1 Y2 biomarker antibody as capture molecule on said DTSP attached gold nanoparticles is in proportions of 60 pL to 1 .5 mL, respectively.
5. The biomarker sensor as claimed in anyone of claims 1 to 4 wherein said gold nanoparticles comprises nanoparticles of ~ 5 nm to ~ 10 nm in diameter having wine red color.
6. A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system comprising: i) an optical source; ii) a sample stage including biomarker sensor comprising gold nanoparticles with capture molecule im mobilized thereon adapted for exhibiting LSPR for target PP1 Y2 biomarker in the analyte for LSPR based target biomarker detection; iii) a signal processor means including an optical detector.
7. A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system as claimed in claim 6 comprising of said biomarker sensor specific towards the target PP1 Y2 biomarker required to be detected in any biological fluid based analyte preferably in urine samples including said gold nanoparticles of ~ 5 nm to ~ 10 nm in diameter having said capture molecule comprising anti-said PP1 Y2 biomarker antibody and wherein said chemical linker to stably immobilize said capture molecule is selected from DTSP, EDC/NHS, cystem ine, DSP, DTSSP preferably DTSP .
8. A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system as claimed in any one of claims 6 or 7, which is configured to allow said biomarker present in analyte/urine sample and the antibody im mobilized on gold nanoparticles interaction and generation of output signals confirm ing LSPR intensity variation based thereon.
9. A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system as claimed in any one of claims 6 to 8 comprising said optical source comprising a light emitting diode (LED) having narrow wavelength between ~ 515 nm and ~ 540 nm , said optical detector including a silicon photodiode capable of sensing in the visible light wavelength range and capturing the variation in the transmitted light intensity compatible to the signal processing unit, with said sample stage including a cuvette, placed in between said optical source and the said optical detector including photodetector, and wherein said signal processor means including transm ission intensity based generation of calibration plot and diagnosis of the unknown samples.
10. A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system as claimed in any one of claims 6 to 9 comprising an optoelectronic device including: an optical transduction set up comprising optical source housing for LSPR optical source preferably LED, an optical detector preferably a photodetector with said sample stage including a glass cuvette placed in between said optical source and said photodetector, said signal processing means operatively connected to display means for detection purposes.
1 1 . A non-invasive and point of care testing (POCT) device facilitating biomarker based cervical cancer detection system as claimed in any one of claims 6 to 10 wherein the optical source illum inates the sensing material held by the glass cuvette, and the output transmitted signal is collected by the photodetector arranged in the apparatus set up; said signal processing means comprises of a m icrocontroller for processing incoming transmitted analog signals from the photodetector to convert it into digital signals for subsequent display, in display means for easy end user detection, said microcontroller recom mended with preloaded calibrated data of various concentration of the protein to be identified, to enable measure of the correct level of the protein of interest present in the analyte examined.
12. A process for the manufacture of the biomarker sensor for specific sensing of cervical cancer as claimed in any one of claims 1 to 5 comprising: i) providing gold nanoparticles in the range of ~ 5 nm to ~ 10 nm ; ii) involving solution of the chemical linker to generate chem ical linked gold nanoparticles; iii) adding selectively 60 pL to 1 .5 m L of anti-NCB antibody solution to the chem ical linked gold nanoparticles to thereby provide the gold nanoparticles with said anti-NCB antibody capture molecules im mobilized thereon capable of exhibiting LSPR for target PP1 Y2 biomarker.
PCT/IN2020/051023 2020-08-11 2020-12-11 Poct device to detect cervical cancer specific biomarker Ceased WO2022034601A1 (en)

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Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
ANONYMOUS: "Annual report 2016-2017-CSIR-CDRI", CDRI COMPENDIUM OF PRODUCTS & SERVICES, 30 November 2018 (2018-11-30), India, pages 1 - 242, XP009535737 *
HONG YOOCHAN, KU MINHEE, LEE EUGENE, SUH JIN-SUCK, HUH YONG-MIN, YOON DAE SUNG, YANG JAEMOON: "Localized surface plasmon resonance based nanobiosensor for biomarker detection of invasive cancer cells", JOURNAL OF BIOMEDICAL OPTICS, vol. 19, no. 5, 2013, pages 1 - 6, XP055909775 *
KAR PARMITA, AGNIHOTRI SAURABH KUMAR, SHARMA ARCHANA, SACHAN REKHA, LAL BHATT MADAN, SACHDEV MONIKA: "A protocol for stripping and reprobing of Western blots originally developed with colorimetric substrate TMB", ELECTROPHORESIS, vol. 33, no. 19-20, October 2012 (2012-10-01), pages 3062 - 3065, XP071501360 *
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