WO2021248587A1 - Marker for diagnosing liver cancer, detection reagent and application thereof - Google Patents

Marker for diagnosing liver cancer, detection reagent and application thereof Download PDF

Info

Publication number
WO2021248587A1
WO2021248587A1 PCT/CN2020/099589 CN2020099589W WO2021248587A1 WO 2021248587 A1 WO2021248587 A1 WO 2021248587A1 CN 2020099589 W CN2020099589 W CN 2020099589W WO 2021248587 A1 WO2021248587 A1 WO 2021248587A1
Authority
WO
WIPO (PCT)
Prior art keywords
liver cancer
traf2
marker
cells
minutes
Prior art date
Application number
PCT/CN2020/099589
Other languages
French (fr)
Chinese (zh)
Inventor
郑敏
梁雪
赵永超
刘艳宁
姚吉平
Original Assignee
浙江大学
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 浙江大学 filed Critical 浙江大学
Publication of WO2021248587A1 publication Critical patent/WO2021248587A1/en

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/136Screening for pharmacological compounds
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers

Definitions

  • the invention belongs to the field of biomedicine, and is used for diagnosing liver cancer markers and detection reagents and applications thereof, and specifically relates to the application of TRAF2 in the diagnosis and treatment of liver cancer.
  • Primary liver cancer (Primary liver cancer, PLC) is one of the few tumors whose incidence rate continues to increase. In the world, liver cancer ranks fourth among cancer-related deaths. China is a major liver cancer country. According to statistics from the World Health Organization, in 2018, there were 392,868 new liver cancer cases (9.2%) and 368,960 deaths (12.9%) in China. Both morbidity and mortality ranked third among all tumors. Although the diagnosis and treatment of liver cancer have made some progress, the onset of liver cancer is insidious, and the early signs are often atypical, and the disease is often in the stage of disease progression. Therefore, the incidence of liver cancer not only increases, but the overall survival rate of liver cancer patients is low. Therefore, studying the main molecular mechanisms of the early occurrence and development of human liver cancer and identifying new high-sensitivity and specific markers of liver cancer are also of far-reaching practical significance for the continuous search for new methods of molecular diagnosis and treatment of liver cancer.
  • liver cancer Changes affect cell proliferation and apoptosis, cell differentiation and other biological processes, leading to disorders of normal physiological regulation and ultimately tumorigenesis. Therefore, by targeting oncogenes and key molecules in related signal pathways, it helps to prevent tumor progression at an early stage and provides new strategies for the treatment of liver cancer.
  • the tumor necrosis factor receptor-associated factor (TRAF) family is an important type of adaptor protein.
  • TRAF family has 7 members (TRAF1-TRAF7).
  • a typical feature of the TRAF family is that they have a common conserved region (except TRAF7) at their C-terminus, that is, the TRAF domain.
  • the TRAF domain mediates protein-protein interactions, not only can mediate the interaction of TRAF molecules with upstream and downstream pathway signal molecules, but also mediate the oligomerization of TRAF. Therefore, an important role of the TRAF family is to act as an adaptor protein in the assembly of receptor-related signal complexes, linking upstream receptors with downstream effector molecules.
  • TRAF family members contain the RING structure, so they are also considered to have E3 ubiquitin ligase activity.
  • Ubiquitinization modification is an important post-translational modification of proteins, which relies on the ubiquitin-proteasome system (UPS). UPS is a way of protein degradation in cells and is essential for maintaining protein homeostasis. Protein ubiquitination is a three-step enzymatic cascade that depends on ATP.
  • ubiquitin activating enzyme E1 activates ubiquitin molecules (ubiquitin, Ub), and then the activated Ub is transferred to ubiquitin conjugating enzyme E2; finally, ubiquitin
  • the ligase E3 recognizes and recruits the target protein and catalyzes the transfer of ubiquitin from E2 to the target protein. This process usually requires the covalent attachment of the ubiquitin molecule to the lysine residue (K) of the target protein.
  • TRAF2 has been proven to have ubiquitin E3 ligase activity.
  • TRAF2 is abnormally amplified and rearranged in a variety of tumor tissues, and mutated in a variety of tumor tissues.
  • the most common form of mutation is a missense mutation.
  • TRAF2 participates in a variety of signals including NF- ⁇ B.
  • the regulation of pathways regulates the proliferation and survival of tumor cells and other important biological processes. Therefore, in-depth exploration of the expression level of TRAF2 in liver cancer and its mechanism of action will lay the foundation for elucidating the molecular mechanism of liver cancer progression and provide potential for early diagnosis and treatment of liver cancer. The target.
  • the present invention provides the application of TRAF2 in the diagnosis and treatment of liver cancer.
  • the present invention adopts the following technical solutions:
  • the present invention provides a marker for diagnosing liver cancer, the marker is TRAF2, and the expression of TRAF2 is up-regulated in patients with liver cancer.
  • the present invention provides the application of TRAF2 in preparing a pharmaceutical composition for preventing or treating liver cancer. Further, the pharmaceutical composition includes a TRAF2 functional expression inhibitor.
  • the invention provides the use of TRAF2 in screening drugs for diagnosis and treatment of liver cancer.
  • the present invention provides a reagent for detecting the expression level of the marker TRAF2, and the reagent includes the following primers:
  • TRAF2-F 5'-GCCCTTCAACCAGAAGGTGAC-3’
  • TRAF2-R 5'-CCAACCCCCAGACACCAGTA-3'.
  • the invention provides the use of a reagent for detecting the expression level of TRAF2 in preparing a kit for diagnosing liver cancer.
  • the expression of TRAF2 is up-regulated in patients with liver cancer.
  • the present invention provides a preparation or kit containing a reaction reagent for detecting the expression level of TRAF2.
  • the third aspect of the present invention provides the application of the preparation or kit in the preparation of products for diagnosing liver cancer.
  • the present invention detects the expression level of TRAF2 in clinical liver cancer tissue samples in detail, and finds that the mRNA and protein expression levels of TRAF2 in liver cancer tissues are significantly higher than those in adjacent tissues. Constructing a model of hepatocarcinoma cells with knockdown and overexpression of TRAF2, and found that TRAF2 can significantly promote the proliferation and cloning ability of hepatocarcinoma cells. The downstream targets of TRAF2 were screened. The immunoprecipitation experiment found that TRAF2 binds to p62 for the first time. Further ubiquitination analysis showed that TRAF2 can add non-degradable K63 polyubiquitin chains to p62 molecules.
  • the nude mouse tumor formation experiment further confirmed that knocking out TRAF2 significantly inhibited the growth of liver cancer in the mouse subcutaneous tumor model and reduced the volume and quality of the tumor.
  • TRAF2 can play a significant role in promoting the growth of liver cancer through post-translational ubiquitination regulation of p62, and its significant high expression in liver cancer tissues may be a key factor involved in the occurrence and progression of liver cancer.
  • the invention provides a new biomarker TRAF2 for the diagnosis of liver cancer, and TRAF2 can be used as a new target for the treatment of liver cancer, and provides a new direction for the screening of drugs for diagnosis and treatment of liver cancer and the treatment of liver cancer.
  • Figure 1 shows the detection of TRAF2 protein and mRNA expression levels in cancer tissues and adjacent tissues in clinical specimens of liver cancer patients.
  • Figure 2 shows the effect of knocking out TRAF2 on the proliferation and cloning ability of liver cancer cells.
  • Figure 3 shows the effect of knocking out TRAF2 on the ability of hepatocarcinoma cells to form subcutaneous tumors.
  • Figure 4 shows the effect of overexpression of TRAF2 on the proliferation and cloning ability of liver cancer cells.
  • FIG. 5 shows that TRAF2 exerts a tumor suppressor effect by directly binding to p62
  • FIG. 6 shows that TRAF2 regulates p62 by targeting ubiquitination to exert its cancer-promoting effects.
  • All use DMEM medium containing 1% penicillin and streptomycin
  • Reverse transcription program 37°C, 15min; 85°C, 5s, end the reaction.
  • the primers used in the experiment are derived from the verified primer sequences in published literature, using cDNA as a template, and adding other components one by one according to the kit instructions.
  • the fluorescence quantitative PCR reaction system and procedures are shown in the following table:
  • Example 3 Detection of TRAF2 protein expression levels in cancer tissues and adjacent tissues of liver cancer patients in clinical specimens.
  • the present invention has a total of 120 pairs of clinical tissue specimens, among which 90 pairs of tissue chips are used for immunohistochemical staining to detect the expression level of TRAF2, and 30 pairs are used to detect the protein expression level of TRAF2 by Western blot.
  • the tissues are from the First affiliated Hospital of Zhejiang University.
  • Transfer membrane prepare the filter paper, sponge pad, and NC membrane required for transfer membrane in advance, mark them with a pencil and soak them in transfer membrane solution in advance; after electrophoresis, pry off the offset plate, take out the gel and place it on the transfer membrane
  • air bubbles must be removed at each step, and then translated to the inner tank of the transfer membrane, with the positive electrode underneath.
  • the negative electrode is on top; the film transfer tank is filled with film transfer liquid, and ice-water mixture is added to the periphery to cool down.
  • the film transfer procedure constant current 250mA, 75min.
  • Secondary antibody incubation According to the properties of the primary antibody, use 3% skimmed milk to configure the corresponding secondary antibody, with a ratio of 1:10000, for 1 hour, at room temperature, and slowly incubate.
  • Exposure and image acquisition ECL 1:1 mixing and color development for 5 minutes, implying that the medium exposure X-ray film, the exposure time is adjusted according to the strength of the target band signal, and then the scanner scans the film, saves the image, and analyzes the results.
  • Tissue dewaxing dewax and hydrate the sections in sequence with xylene for 15 minutes, xylene II for 15 minutes, 100% alcohol for 5 minutes, 100% alcohol for 5 minutes, 90% alcohol for 5 minutes, 80% alcohol for 5 minutes, and 75% alcohol for 5 minutes. deal with.
  • Antigen retrieval use DAKO automatic immunohistochemistry pretreatment system instrument to restore.
  • DAB color development liquid is configured according to the instructions, DAB color development liquid is added dropwise, the color development time is controlled by observation under a microscope, and the color development is terminated by distilled water.
  • the immunohistochemical staining picture shows that the staining intensity of TRAF2 in liver cancer tissues is significantly higher than that in adjacent adjacent tissues.
  • SPSS software was used to analyze the T-test and found that the expression level of TRAF2 in liver cancer tissues was significant Higher than adjacent tissues.
  • Huh7 and Hep3B cells should be pretreated in advance according to the experimental requirements and counted. Inoculate 1500 cells in each well of a 96-well plate, and make three duplicate wells;
  • nude mice 4-5 weeks old, immunodeficient male nude mice were purchased from Jiangsu Jicui Yaokang Biotech Co., Ltd. The nude mice were raised in a room dedicated to immunodeficiency mice, and each nude mouse was marked with ear studs and weighed. weight. According to the experimental design, there are 5 nude mice per group;
  • Cell count The number of cells inoculated is 1 ⁇ 10 6 cells, the cells are digested and centrifuged and counted, and the cells are resuspended in 1 ⁇ PBS to make the concentration of the cell suspension 1 ⁇ 10 7 cells/ml. After fully mixing the cell suspension, each group is divided into 6 EP tubes, each tube 100 ⁇ l;
  • Tumor volume measurement and nude mouse weighing Weigh the nude mouse body weight and tumor length and short diameter every three days and record;
  • Huh7-sgTRAF2 cells and Huh7-sgCtrl cells were prepared into cell suspensions and inoculated into nude mice subcutaneously. After 14 days of observation and recording, it was found that the volume and weight of subcutaneous tumors formed after TRAF2 were knocked out were less than Control group.
  • the cells are plated the day before, and the cells are transfected with plasmid on the second day (the specific amount of plasmid is based on the experimental design). After 48 hours of transfection, the cells are scraped to collect the cells. You can proceed directly to the second step or put the cells at -80°C for use;
  • the endogenous co-immunoprecipitation step is similar to the exogenous one, with an additional step of incubating antibodies: add specific antibodies and Normal IgG as controls to the cell lysis supernatant, and incubate in a refrigerator at 4°C for 2-4 hours; prepare 20 ⁇ l Protein G beads , The method is the same as that of exogenous. Transfer all the samples that have been incubated with antibodies into EP tubes with added Protein G beads, and continue to incubate in a refrigerator at 4°C for 3 hours; as shown in Figure 5, after exogenous and endogenous Co- IP detection found that TRAF2 binds to p62.
  • the p62 protein ubiquitination level was detected by the exogenous Co-IP method. Since the plasmid with Ub in the experiment is HA tag, the experiment was carried out with HA beads. Collect the samples, lyse the protein and determine the concentration, add 15 ⁇ l HA beads to each group of samples, and then co-incubate with the beads for subsequent steps. As shown in Figure 6, the ubiquitin E3 ligase TRAF2 can add ubiquitin chains to p62.
  • Embodiment 10 Data analysis
  • the survival analysis adopts the Kaplan-Meier method to analyze
  • the experimental data adopts SPSS 20.0 software for statistical analysis.
  • Analysis of variance (ANOVA) and Student’s t-test test were used to test the differences between the cell proliferation and survival experiment groups. P ⁇ 0.05 indicates that the differences are statistically significant.
  • the results are graphed by GraphPad Prism 8.0 software.

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Public Health (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Veterinary Medicine (AREA)
  • Wood Science & Technology (AREA)
  • Immunology (AREA)
  • Medicinal Chemistry (AREA)
  • Pathology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Animal Behavior & Ethology (AREA)
  • Hospice & Palliative Care (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Oncology (AREA)
  • Physics & Mathematics (AREA)
  • Epidemiology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The present invention provides a marker for diagnosing liver cancer. The marker is TRAF2. The expression of the TRAF2 in a liver cancer patient is upregulated.

Description

用于诊断肝癌的标志物及其检测试剂和应用Marker for diagnosing liver cancer and detection reagent and application thereof 技术领域Technical field
本发明属于生物医药领域,用于诊断肝癌的标志物及其检测试剂和应用,具体涉及TRAF2在肝癌诊治中的应用。The invention belongs to the field of biomedicine, and is used for diagnosing liver cancer markers and detection reagents and applications thereof, and specifically relates to the application of TRAF2 in the diagnosis and treatment of liver cancer.
背景技术Background technique
原发性肝癌(Primary liver cancer,PLC)是为数不多的发病率持续上升的肿瘤之一,在世界范围内,肝癌位居癌症相关死亡肿瘤的第四位。中国是肝癌大国,根据世界卫生组织统计,2018年我国新增肝癌392868例(9.2%),死亡368960例(12.9%),无论是发病率还是死亡率均居所有肿瘤的第三位。尽管肝癌的诊断和治疗有一定进展,但由于肝癌起病隐匿,早期征兆多不典型,就诊时常已处于疾病进展阶段,因此肝癌不仅发病率增高,肝癌患者的总体生存率低。因此研究人类肝癌早期发生及其发展的主要分子机制,鉴定新的肝癌高灵敏度和特异性标记物,对于不断寻求新的肝癌分子诊断与治疗疗法方式等也有着深远的现实意义。Primary liver cancer (Primary liver cancer, PLC) is one of the few tumors whose incidence rate continues to increase. In the world, liver cancer ranks fourth among cancer-related deaths. China is a major liver cancer country. According to statistics from the World Health Organization, in 2018, there were 392,868 new liver cancer cases (9.2%) and 368,960 deaths (12.9%) in China. Both morbidity and mortality ranked third among all tumors. Although the diagnosis and treatment of liver cancer have made some progress, the onset of liver cancer is insidious, and the early signs are often atypical, and the disease is often in the stage of disease progression. Therefore, the incidence of liver cancer not only increases, but the overall survival rate of liver cancer patients is low. Therefore, studying the main molecular mechanisms of the early occurrence and development of human liver cancer and identifying new high-sensitivity and specific markers of liver cancer are also of far-reaching practical significance for the continuous search for new methods of molecular diagnosis and treatment of liver cancer.
近年来,对原发性肝癌发病机制的研究越来越多,目前的研究主要集中在基因水平的突变及相关的信号通路。端粒酶逆转录酶(telomerase reverse transcriptase,TERT)启动子区的突变是最常见的遗传变异,约占肝癌突变的60%,此外TP53、ARIDA1A、CTNNB1、Axin1的启动子区也是常见的突变区域。目前已知的参与原发性肝癌发生发展的信号通路主要有NF-κB通路,自噬通路,PI3K/AKT/mTOR信号通路等信号通路,这些与肝癌发生发展相关的基因突变及相关信号通路的改变通过影响细胞增殖与凋亡,细胞分化等生物学过程,导致其正常生理调控紊乱,最终导致肿瘤发生。因此通过靶向癌基因及相关信号通路中的关键分子,有助于早期预防肿瘤进展,为肝癌的治疗提供新的策略。In recent years, there have been more and more researches on the pathogenesis of primary liver cancer. The current research mainly focuses on mutations at the gene level and related signal pathways. Mutations in the promoter region of telomerase reverse transcriptase (TERT) are the most common genetic variation, accounting for about 60% of liver cancer mutations. In addition, the promoter regions of TP53, ARIDA1A, CTNNB1, and Axin1 are also common mutation regions. . Currently known signal pathways involved in the occurrence and development of primary liver cancer mainly include NF-κB pathway, autophagy pathway, PI3K/AKT/mTOR signal pathway and other signal pathways. These gene mutations and related signal pathways related to the occurrence and development of liver cancer Changes affect cell proliferation and apoptosis, cell differentiation and other biological processes, leading to disorders of normal physiological regulation and ultimately tumorigenesis. Therefore, by targeting oncogenes and key molecules in related signal pathways, it helps to prevent tumor progression at an early stage and provides new strategies for the treatment of liver cancer.
肿瘤坏死因子受体相关因子家族(Tumor necrosis factor receptor-associated factor,TRAF)是一类重要的接头蛋白,目前TRAF家族有7名成员(TRAF1-TRAF7)。TRAF家族一个典型的特点是在它们的C末端有一个共同的保守区域(TRAF7除外),即TRAF结构域。TRAF结构域介导蛋白质-蛋白质的相互作用,不仅可以介导TRAF分子与上下游通路信号分子的相互作用,同时还可以介导TRAF的寡聚化。因此,TRAF家族的一个重要作用是在受体相关信号复合物的组装中充当衔接蛋白的角色,将上游受体与下游效应分子连接起来。此外,TRAF家族成员含RING结构,因此也被认为具有E3泛素连接酶的活性。泛素化修饰是一种重要的蛋白质翻译后修饰,依赖于泛素-蛋白酶体系统(ubiquitin-proteasome system,UPS)。UPS是细胞内蛋白质降解的一种方式,对于维持蛋白质稳态至关重要。蛋白质泛素化是一种依赖ATP的三步酶促级联反应,首先泛素激活酶E1活化泛素分子(ubiquitin,Ub),接着活化的Ub被转移 到泛素结合酶E2;最后,泛素连接酶E3,识别并募集靶蛋白,催化泛素从E2到靶蛋白的转移,此过程通常需要泛素分子共价附于靶蛋白的赖氨酸残基(K)上来实现。目前TRAF2已被证明具有泛素E3连接酶活性。The tumor necrosis factor receptor-associated factor (TRAF) family is an important type of adaptor protein. Currently, the TRAF family has 7 members (TRAF1-TRAF7). A typical feature of the TRAF family is that they have a common conserved region (except TRAF7) at their C-terminus, that is, the TRAF domain. The TRAF domain mediates protein-protein interactions, not only can mediate the interaction of TRAF molecules with upstream and downstream pathway signal molecules, but also mediate the oligomerization of TRAF. Therefore, an important role of the TRAF family is to act as an adaptor protein in the assembly of receptor-related signal complexes, linking upstream receptors with downstream effector molecules. In addition, TRAF family members contain the RING structure, so they are also considered to have E3 ubiquitin ligase activity. Ubiquitinization modification is an important post-translational modification of proteins, which relies on the ubiquitin-proteasome system (UPS). UPS is a way of protein degradation in cells and is essential for maintaining protein homeostasis. Protein ubiquitination is a three-step enzymatic cascade that depends on ATP. First, ubiquitin activating enzyme E1 activates ubiquitin molecules (ubiquitin, Ub), and then the activated Ub is transferred to ubiquitin conjugating enzyme E2; finally, ubiquitin The ligase E3 recognizes and recruits the target protein and catalyzes the transfer of ubiquitin from E2 to the target protein. This process usually requires the covalent attachment of the ubiquitin molecule to the lysine residue (K) of the target protein. At present, TRAF2 has been proven to have ubiquitin E3 ligase activity.
现有的研究表明TRAF2在多种肿瘤组织中异常扩增重排,并且在多种肿瘤组织中突变,其最常见的突变形式为错义突变,TRAF2参与包括NF-κB等在内多种信号通路的调控,调控肿瘤细胞的增殖存活等重要生物学过程,因此深入探究TRAF2在肝癌中的表达水平及其作用机制,将为阐明肝癌发生进展的分子机制奠定基础,为肝癌的早期诊治提供潜在的靶点。Existing studies have shown that TRAF2 is abnormally amplified and rearranged in a variety of tumor tissues, and mutated in a variety of tumor tissues. The most common form of mutation is a missense mutation. TRAF2 participates in a variety of signals including NF-κB. The regulation of pathways regulates the proliferation and survival of tumor cells and other important biological processes. Therefore, in-depth exploration of the expression level of TRAF2 in liver cancer and its mechanism of action will lay the foundation for elucidating the molecular mechanism of liver cancer progression and provide potential for early diagnosis and treatment of liver cancer. The target.
发明内容Summary of the invention
本发明的是提供TRAF2在肝癌诊治中的应用。为了实现上述目的,本发明采用如下技术方案:The present invention provides the application of TRAF2 in the diagnosis and treatment of liver cancer. In order to achieve the above objectives, the present invention adopts the following technical solutions:
本发明提供一种用于诊断肝癌的标志物,所述的标志物为TRAF2,所述TRAF2在肝癌患者中表达上调。The present invention provides a marker for diagnosing liver cancer, the marker is TRAF2, and the expression of TRAF2 is up-regulated in patients with liver cancer.
本发明提供TRAF2在制备预防或治疗肝癌的药物组合物中的应用。进一步,所述药物组合物包括TRAF2功能性表达抑制剂。The present invention provides the application of TRAF2 in preparing a pharmaceutical composition for preventing or treating liver cancer. Further, the pharmaceutical composition includes a TRAF2 functional expression inhibitor.
本发明提供TRAF2筛选肝癌诊治药物中的用途。The invention provides the use of TRAF2 in screening drugs for diagnosis and treatment of liver cancer.
本发明提供用于检测标志物TRAF2表达水平的试剂,所述试剂包括如下引物:The present invention provides a reagent for detecting the expression level of the marker TRAF2, and the reagent includes the following primers:
TRAF2-F:5'-GCCCTTCAACCAGAAGGTGAC-3’TRAF2-F: 5'-GCCCTTCAACCAGAAGGTGAC-3’
TRAF2-R:5’-CCAACCCCCAGACACCAGTA-3’。TRAF2-R: 5'-CCAACCCCCAGACACCAGTA-3'.
本发明提供检测TRAF2表达水平的试剂在制备诊断肝癌试剂盒中的用途。所述TRAF2在肝癌患者中表达上调。The invention provides the use of a reagent for detecting the expression level of TRAF2 in preparing a kit for diagnosing liver cancer. The expression of TRAF2 is up-regulated in patients with liver cancer.
另外,本发明提供一种制剂或试剂盒,所述制剂或试剂盒含有检测TRAF2表达水平的反应试剂。In addition, the present invention provides a preparation or kit containing a reaction reagent for detecting the expression level of TRAF2.
本发明第三方面,提供所述制剂或试剂盒在制备诊断肝癌产品中的应用。The third aspect of the present invention provides the application of the preparation or kit in the preparation of products for diagnosing liver cancer.
本发明取得的有益效果:The beneficial effects achieved by the present invention:
本发明详细的检测了临床肝癌组织样本中TRAF2的表达水平,发现与癌旁组织相比,肝癌组织中TRAF2的mRNA和蛋白的表达水平均显著增高。构建TRAF2敲低和过表达的肝癌细胞模型,发现TRAF2能够显著促进肝癌细胞的增殖、克隆形成能力。对TRAF2发挥作用的下游靶点进行筛选,免疫共沉淀实验首次发现TRAF2与p62结合,进一步泛素化分析显示,TRAF2能够给p62分子添加非降解的K63多聚泛素链。裸鼠成瘤实验进一步证实:敲除TRAF2显著抑制小鼠皮下成瘤模型中肝癌的生长并降低瘤体的体积与质量。这些结果均显示:TRAF2能够通过对p62进行翻译后泛素化调控进而对肝癌的生长发挥显著的促进效应,而其在肝癌 组织中显著性高表达有可能是参与肝癌发生与进展的关键因素。本发明为肝癌的诊断提供了新的生物标志物TRAF2,并且TRAF2可以作为治疗肝癌的新型靶点,为筛选诊治肝癌药物及治疗肝癌提供了新方向。The present invention detects the expression level of TRAF2 in clinical liver cancer tissue samples in detail, and finds that the mRNA and protein expression levels of TRAF2 in liver cancer tissues are significantly higher than those in adjacent tissues. Constructing a model of hepatocarcinoma cells with knockdown and overexpression of TRAF2, and found that TRAF2 can significantly promote the proliferation and cloning ability of hepatocarcinoma cells. The downstream targets of TRAF2 were screened. The immunoprecipitation experiment found that TRAF2 binds to p62 for the first time. Further ubiquitination analysis showed that TRAF2 can add non-degradable K63 polyubiquitin chains to p62 molecules. The nude mouse tumor formation experiment further confirmed that knocking out TRAF2 significantly inhibited the growth of liver cancer in the mouse subcutaneous tumor model and reduced the volume and quality of the tumor. These results all show that TRAF2 can play a significant role in promoting the growth of liver cancer through post-translational ubiquitination regulation of p62, and its significant high expression in liver cancer tissues may be a key factor involved in the occurrence and progression of liver cancer. The invention provides a new biomarker TRAF2 for the diagnosis of liver cancer, and TRAF2 can be used as a new target for the treatment of liver cancer, and provides a new direction for the screening of drugs for diagnosis and treatment of liver cancer and the treatment of liver cancer.
附图说明Description of the drawings
图1所示为肝癌患者临床标本中癌组织与癌旁组织中TRAF2蛋白和mRNA表达水平的检测。Figure 1 shows the detection of TRAF2 protein and mRNA expression levels in cancer tissues and adjacent tissues in clinical specimens of liver cancer patients.
图2所示为敲除TRAF2对肝癌细胞增殖及克隆形成能力的影响。Figure 2 shows the effect of knocking out TRAF2 on the proliferation and cloning ability of liver cancer cells.
图3所示为敲除TRAF2对肝癌细胞皮下成瘤能力的影响。Figure 3 shows the effect of knocking out TRAF2 on the ability of hepatocarcinoma cells to form subcutaneous tumors.
图4所示为过表达TRAF2对肝癌细胞增殖及克隆形成能力的影响。Figure 4 shows the effect of overexpression of TRAF2 on the proliferation and cloning ability of liver cancer cells.
图5所示为TRAF2通过与p62直接结合发挥抑癌效应Figure 5 shows that TRAF2 exerts a tumor suppressor effect by directly binding to p62
图6所示为TRAF2通过靶向泛素化调控p62发挥促癌效应。Figure 6 shows that TRAF2 regulates p62 by targeting ubiquitination to exert its cancer-promoting effects.
具体实施方式detailed description
以下实施例用于说明本发明,但不用来限制本发明的范围。若未特别指明,实施例中所用的技术手段为本领域技术人员所熟知的常规手段。为了使得本领域技术人员能够更加清楚地了解本发明的技术方案,以下将结合具体的实施例详细说明本发明的技术方案。The following examples are used to illustrate the present invention, but not to limit the scope of the present invention. Unless otherwise specified, the technical means used in the embodiments are conventional means well known to those skilled in the art. In order to enable those skilled in the art to understand the technical solutions of the present invention more clearly, the technical solutions of the present invention will be described in detail below in conjunction with specific embodiments.
实施例1 细胞株及培养条件Example 1 Cell lines and culture conditions
人胚肾上皮细胞293,人肝癌细胞系HepG2,Huh7,Hep3B,PLC/PRF/5,SK-HEP-1,人正常肝细胞HL-7702细胞,为本实验室长期培养的细胞系,培养条件:均采用DMEM培养基(含1%的青霉素和链霉素),置于5%CO2,37℃培养箱进行培养。Human embryonic kidney epithelial cells 293, human liver cancer cell lines HepG2, Huh7, Hep3B, PLC/PRF/5, SK-HEP-1, human normal liver cells HL-7702 cells, this is a long-term cultured cell line in our laboratory, and the culture conditions : All use DMEM medium (containing 1% penicillin and streptomycin), placed in 5% CO2, 37 ℃ incubator for culture.
实施例2 Real-time PCR检测TRAF2在肝癌细胞及正常肝细胞中mRNA的表达水平Example 2 Real-time PCR detection of the mRNA expression level of TRAF2 in liver cancer cells and normal liver cells
1.RNA提取1. RNA extraction
(1)取六孔板中培养的细胞,加1ml Trizol裂解细胞,转移液体至无RNA酶的Eppendorf管。(1) Take the cells cultured in the six-well plate, add 1ml Trizol to lyse the cells, and transfer the liquid to an RNase-free Eppendorf tube.
(2)加入0.2ml已预冷的氯仿,用手剧烈振荡摇晃15秒后,室温静置3分钟,直至可看到清晰的分层现象。(2) Add 0.2ml of pre-cooled chloroform, shake vigorously by hand for 15 seconds, and let it stand at room temperature for 3 minutes until clear layering can be seen.
(3)4℃,12000g离心15分钟,将上层含RNA的水相转移到新的Eppendorf管中。(3) Centrifuge at 12000g for 15 minutes at 4°C, and transfer the upper aqueous phase containing RNA to a new Eppendorf tube.
(4)加入0.5ml已预冷的异丙醇,上下颠倒混匀后,室温静置10分钟。(4) Add 0.5 ml of pre-cooled isopropanol, mix it upside down and let it stand at room temperature for 10 minutes.
(5)4℃,10000g离心10分钟;弃上清,加入1ml 75%乙醇来洗涤RNA沉淀。4℃,7500g离心5分钟,弃上清。(5) Centrifuge at 10000g for 10 minutes at 4°C; discard the supernatant, and add 1ml 75% ethanol to wash the RNA pellet. Centrifuge at 7500g for 5 minutes at 4°C, and discard the supernatant.
(6)室温下干燥约5~10分钟。加入20μl~50μl无RNase的水,枪头吹打几次,55~60℃放置10分钟使RNA完全溶解。(6) Dry for about 5-10 minutes at room temperature. Add 20μl~50μl of RNase-free water, pipette several times with a pipette tip, and place at 55~60℃ for 10 minutes to completely dissolve the RNA.
(7)用NanoDrop仪器测定RNA的浓度。(7) Measure the concentration of RNA with NanoDrop instrument.
2.逆转录合成cDNA2. Reverse transcription synthesis of cDNA
在无RNA酶的PCR管中先后加入以下试剂:Add the following reagents to the RNase-free PCR tube:
Figure PCTCN2020099589-appb-000001
Figure PCTCN2020099589-appb-000001
逆转录程序:37℃,15min;85℃,5s,结束反应。Reverse transcription program: 37°C, 15min; 85°C, 5s, end the reaction.
3.荧光定量RT-PCR实验3. Fluorescence quantitative RT-PCR experiment
实验中所用的引物来源于已经发表文献经过验证的引物序列,以cDNA为模板,按照试剂盒说明书逐一添加其他组分,荧光定量PCR反应体系及程序见下表:The primers used in the experiment are derived from the verified primer sequences in published literature, using cDNA as a template, and adding other components one by one according to the kit instructions. The fluorescence quantitative PCR reaction system and procedures are shown in the following table:
Figure PCTCN2020099589-appb-000002
Figure PCTCN2020099589-appb-000002
PCR程序:95℃预变性30s→95℃5s→60℃30s,重复40个循环;PCR program: 95℃ pre-denaturation 30s→95℃5s→60℃30s, repeat 40 cycles;
每个样品做三个复孔,实时定量PCR仪会根据标准曲线自动地读出各个样品的Ct值,以此计算出每一个样品的拷贝数,随后分别取两个样品定量结果的平均值,最后以GAPDH基因作为内参基因,分别校对每个样品的基因拷贝数。Make three replicate wells for each sample, and the real-time quantitative PCR instrument will automatically read the Ct value of each sample according to the standard curve to calculate the copy number of each sample, and then take the average of the quantitative results of the two samples. Finally, GAPDH gene was used as the internal reference gene, and the gene copy number of each sample was checked separately.
如图1所示,通过定量RT-PCR检测,5株肝癌细胞株中TRAF2mRNA表达水平显著高于正常HL7702细胞。As shown in Figure 1, through quantitative RT-PCR detection, the expression level of TRAF2mRNA in the 5 hepatocarcinoma cell lines was significantly higher than that of normal HL7702 cells.
实施例3 肝癌患者临床标本中癌组织与癌旁组织中TRAF2蛋白表达水平的检测。Example 3 Detection of TRAF2 protein expression levels in cancer tissues and adjacent tissues of liver cancer patients in clinical specimens.
本发明共有临床组织标本120对,其中组织芯片90对样本用于免疫组织化学染色检测TRAF2的表达水平,30对通过Western blot检测TRAF2的蛋白表达水平,组织来自浙江大 学附属第一医院。The present invention has a total of 120 pairs of clinical tissue specimens, among which 90 pairs of tissue chips are used for immunohistochemical staining to detect the expression level of TRAF2, and 30 pairs are used to detect the protein expression level of TRAF2 by Western blot. The tissues are from the First Affiliated Hospital of Zhejiang University.
1.组织蛋白的提取1. Extraction of tissue protein
(1)采用液氮研磨的方式,将获得的肝癌临床样本组织置于研钵中,并加入液氮进行研磨,研磨过程中要保证研钵中始终有液氮。当组织样本研钵至粉末时即可,转入EP管中,并加入蛋白裂解液。(1) Using liquid nitrogen grinding, put the obtained liver cancer clinical sample tissue in a mortar, and add liquid nitrogen for grinding. During the grinding process, ensure that there is always liquid nitrogen in the mortar. When the tissue sample is powdered in the mortar, transfer it to the EP tube and add the protein lysis solution.
(2)裂解:裂解液中需提前加入蛋白酶抑制剂与磷酸酶抑制,比例为:50:1:5,裂解30min,每隔10min混匀一次,整个裂解过程在冰上操作。13600rpm,4℃,30min,将上清导入新的1.5ml EP管中备用。(2) Lysis: Protease inhibitor and phosphatase inhibition should be added to the lysis solution in advance, the ratio is: 50:1:5, the lysis is 30min, and the mixing is done every 10min. The entire lysis process is operated on ice. 13600rpm, 4℃, 30min, transfer the supernatant into a new 1.5ml EP tube for later use.
(3)蛋白浓度测定:采用BCA蛋白定量试剂盒进行测定,具体方法按照试剂盒说明书进行,采用M5酶标仪读数。(3) Protein concentration determination: use BCA protein quantification kit for determination, the specific method is in accordance with the kit instructions, and M5 microplate reader is used for reading.
2.Western blot2.Western blot
(1)蛋白凝胶的制备:(1) Preparation of protein gel:
分离胶:Separating glue:
Figure PCTCN2020099589-appb-000003
Figure PCTCN2020099589-appb-000003
浓缩胶:Concentrated glue:
Figure PCTCN2020099589-appb-000004
Figure PCTCN2020099589-appb-000004
(2)变性样品制备:之前已经测好浓度的蛋白样品,根据上样体积加入适量4×SDS sample  buffer,并加水补齐,以保证每个样品的总体积相同。100℃,10min金属浴,使蛋白完全变性。13600rpm,RT,1min离心备用;(2) Preparation of denatured samples: For protein samples whose concentrations have been measured before, add an appropriate amount of 4×SDS sample buffer according to the sample volume, and add water to make up to ensure that the total volume of each sample is the same. 100℃, 10min metal bath, completely denature the protein. Centrifuge at 13600rpm, RT, 1min for later use;
(3)凝胶电泳:小心拔出制胶梳,清水轻柔的冲洗一次后,将其固定于电泳槽中,并加入1×SDS电泳液;将准备好的蛋白样品按实验需求逐一上样,需要注意,上样过程中尽量避免蛋白样品的丢失。蛋白电泳程序为:60V→marker清晰分开→120V→溴酚蓝至凝胶底部,结束跑胶(保持恒压)。(3) Gel electrophoresis: carefully pull out the gel-making comb, rinse it gently with clean water, fix it in the electrophoresis tank, and add 1×SDS electrophoresis solution; load the prepared protein samples one by one according to the experimental requirements. It should be noted that try to avoid the loss of protein samples during sample loading. The procedure of protein electrophoresis is: 60V→marker clear separation→120V→bromophenol blue to the bottom of the gel, and end the gel run (keep constant pressure).
(4)转膜:提前准备好转膜所需的滤纸,海绵垫,NC膜用铅笔做好标记并提前浸润于转膜液中备用;电泳结束,撬开制胶版,取出凝胶置于转膜液中,按照海绵垫,滤纸,NC膜,蛋白凝胶的顺序制备“三明治夹心”转膜结构,此过程中每一步都要赶气泡,之后平移转到转膜内胆槽中,正极在下,负极在上;转膜槽中灌满转膜液,外周加入冰水混合物降温,转膜程序:恒流250mA,75min。(4) Transfer membrane: prepare the filter paper, sponge pad, and NC membrane required for transfer membrane in advance, mark them with a pencil and soak them in transfer membrane solution in advance; after electrophoresis, pry off the offset plate, take out the gel and place it on the transfer membrane In the liquid, prepare a "sandwich" transfer membrane structure in the order of sponge pad, filter paper, NC membrane, and protein gel. In this process, air bubbles must be removed at each step, and then translated to the inner tank of the transfer membrane, with the positive electrode underneath. The negative electrode is on top; the film transfer tank is filled with film transfer liquid, and ice-water mixture is added to the periphery to cool down. The film transfer procedure: constant current 250mA, 75min.
(5)封闭:转膜结束,1×TBST清洗NC膜一次,之后丽春红染色液染色,根据条带的位置大小裁剪NC膜;1×TBST清洗丽春红至红色脱掉,5%的脱脂牛奶封闭NC膜,摇床上缓慢进行,45-60min。(5) Closing: After the transfer of the membrane, 1×TBST cleans the NC membrane once, then the Ponceau staining solution is stained, and the NC membrane is cut according to the position and size of the strip; 1×TBST washes the Ponceau to remove the red, 5% Seal the NC membrane with skimmed milk and proceed slowly on a shaker for 45-60 minutes.
(6)一抗孵育:封闭结束,1×TBST清洗残存牛奶,不同的目的分子根据说明书分别配置一抗稀释液,一般选用1%脱脂牛奶或5%BSA,置于4℃冰箱,摇床孵育12-15小时。(6) Primary antibody incubation: After blocking, 1×TBST washes the remaining milk, and different target molecules are prepared according to the instructions to prepare the primary antibody diluent. Generally, 1% skimmed milk or 5% BSA is used, placed in a refrigerator at 4°C, and incubated on a shaker. 12-15 hours.
(7)一抗回收,洗膜:孵育一抗结束后回收至15ml离心管中,置于-20℃冰箱冻存。1×TBST洗涤NC膜3次,每次10min。(7) Recover the primary antibody and wash the membrane: After incubating the primary antibody, it is recovered into a 15ml centrifuge tube and placed in a refrigerator at -20°C for storage. Wash the NC membrane 3 times with 1×TBST for 10 minutes each time.
(8)二抗孵育:根据一抗属性用3%的脱脂牛奶配置相应二抗,比例为1:10000,1小时,室温,缓慢孵育。(8) Secondary antibody incubation: According to the properties of the primary antibody, use 3% skimmed milk to configure the corresponding secondary antibody, with a ratio of 1:10000, for 1 hour, at room temperature, and slowly incubate.
(9)洗膜:二抗孵育结束后,按照与洗涤一抗相同的步骤洗涤三次,静置等待WB曝光。(9) Washing the membrane: After the secondary antibody incubation is completed, wash it three times according to the same procedure as washing the primary antibody, and let it stand for WB exposure.
(10)曝光与图像采集:ECL1:1混匀显色5min,暗示中曝光X光胶片,曝光时间根据目的条带信号强弱调整,之后扫描仪扫描胶片,保存图像,并分析结果。(10) Exposure and image acquisition: ECL 1:1 mixing and color development for 5 minutes, implying that the medium exposure X-ray film, the exposure time is adjusted according to the strength of the target band signal, and then the scanner scans the film, saves the image, and analyzes the results.
如图1所示,经western blot检测,临床肝癌组织中TRAF2的蛋白表达水平显著高于癌旁组织。As shown in Figure 1, after western blot detection, the protein expression level of TRAF2 in clinical liver cancer tissues was significantly higher than that in adjacent tissues.
实施例4 免疫组化检测TRAF2在肝癌和癌旁组织中的表达情况Example 4 Immunohistochemical detection of the expression of TRAF2 in liver cancer and adjacent tissues
(1)烤片:将组织芯片放置烘箱中,温度调至63℃,烤蜡1h,使表面蜡融化(1) Baked slices: Place the tissue chip in an oven, adjust the temperature to 63℃, and bake the wax for 1 hour to melt the surface wax
(2)组织脱蜡:将切片依次至于二甲苯15min、二甲苯Ⅱ15min、100%酒精5min、100%酒精Ⅱ5min、90%酒精5min、80%酒精5min、75%酒精5min,进行脱蜡和水化处理。(2) Tissue dewaxing: dewax and hydrate the sections in sequence with xylene for 15 minutes, xylene II for 15 minutes, 100% alcohol for 5 minutes, 100% alcohol for 5 minutes, 90% alcohol for 5 minutes, 80% alcohol for 5 minutes, and 75% alcohol for 5 minutes. deal with.
(3)漂洗切片:用蒸馏水漂洗切片三次,每次5min;继续用PBS洗涤三次,每次5min。(3) Rinse the sections: Rinse the sections with distilled water three times, each time for 5 minutes; continue to wash three times with PBS, each time for 5 minutes.
(4)抗原修复:使用DAKO全自动免疫组化预处理系统仪器修复。(4) Antigen retrieval: use DAKO automatic immunohistochemistry pretreatment system instrument to restore.
(5)滴加3%H2O2,37℃孵育30min,取出芯片,用PBS洗涤三次,每次5min。(5) Add 3% H2O2 dropwise, incubate at 37°C for 30 minutes, take out the chip, and wash it with PBS three times for 5 minutes each time.
(6)封闭:滴加山羊血清封闭液,37℃孵育30min。(6) Blocking: Add goat serum blocking solution dropwise, and incubate at 37°C for 30 minutes.
(7)一抗孵育:弃去山羊血清封闭液,擦干组织周围液体,直接滴加稀释后的一抗,4℃过夜。(7) Primary antibody incubation: discard the goat serum blocking solution, dry the surrounding fluid, and directly add the diluted primary antibody dropwise at 4°C overnight.
(8)复温:将湿盒取出置于37℃孵育30min。(8) Rewarming: Take out the wet box and incubate at 37°C for 30 minutes.
(9)PBS洗涤三次,每次洗5min。滴加二抗,37℃孵育30min。(9) Wash with PBS three times, 5 minutes each time. Add the secondary antibody dropwise and incubate at 37°C for 30 min.
(10)PBS洗涤三次,每次洗5min;滴加辣根过氧化物酶标记的链霉素卵白素工作液,37℃孵育30min。(10) Wash three times with PBS, each washing for 5 minutes; add dropwise horseradish peroxidase-labeled streptomycin avidin working solution, and incubate at 37°C for 30 minutes.
(11)用PBS洗涤,每次洗5min,共洗三次。(11) Wash with PBS for 5 minutes each time, a total of three times.
(12)DAB显色:DAB显色液按说明书配置,滴加DAB显色液,镜下观察控制显色时间,蒸馏水终止显色。(12) DAB color development: DAB color development liquid is configured according to the instructions, DAB color development liquid is added dropwise, the color development time is controlled by observation under a microscope, and the color development is terminated by distilled water.
(13)苏木素复染10min。(13) Hematoxylin counterstaining for 10 minutes.
如图1所示,免疫组化染色图片显示TRAF2在肝癌组织中染色强度显著高于临近癌旁组织,对染色强度定量后,利用SPSS软件经T检验分析发现,肝癌组织中TRAF2的表达水平显著高于癌旁组织。As shown in Figure 1, the immunohistochemical staining picture shows that the staining intensity of TRAF2 in liver cancer tissues is significantly higher than that in adjacent adjacent tissues. After quantifying the staining intensity, SPSS software was used to analyze the T-test and found that the expression level of TRAF2 in liver cancer tissues was significant Higher than adjacent tissues.
实施例5 ATPlite细胞增殖实验Example 5 ATPlite cell proliferation experiment
(1)Huh7和Hep3B细胞,提前按实验需求进行预处理,并计数,96孔板每孔中接种1500个细胞,并做三个复孔;(1) Huh7 and Hep3B cells should be pretreated in advance according to the experimental requirements and counted. Inoculate 1500 cells in each well of a 96-well plate, and make three duplicate wells;
(2)第二天,每孔中加入35μl的ATPlite,避光混匀5min后,导出至白色96孔板,酶标仪读数;(2) On the second day, add 35μl of ATPlite to each well, mix for 5 minutes in the dark, export to a white 96-well plate, and read with a microplate reader;
(3)重复第二天步骤,共监测5天;(3) Repeat the steps for the second day for a total of 5 days of monitoring;
(4)之后每天的读数与第一天做比值,绘制生长曲线。共重复三次,做统计学分析。(4) After that, the readings of each day are compared with the first day, and the growth curve is drawn. A total of three replicates were performed for statistical analysis.
如图3所示,经ATPlite试剂盒检测后发现,Huh7与Hep3B细胞分别敲除TRAF2基因后,Huh7与Hep3B细胞增殖能力显著下降。图4,在敲除TRAF2的Huh7细胞中重新转入TRAF2的过表达质粒后,Huh7细胞增殖能力显著强于对照组。As shown in Figure 3, after detection by the ATPlite kit, it was found that after the TRAF2 gene was knocked out in Huh7 and Hep3B cells, the proliferation ability of Huh7 and Hep3B cells was significantly reduced. Figure 4. After the TRAF2 knockout Huh7 cells were re-transformed into the TRAF2 overexpression plasmid, the proliferation ability of Huh7 cells was significantly stronger than that of the control group.
实施例6 克隆形成实验Example 6 Clone formation experiment
准备:加入2.5ml 0.1%gelatin,静置20分钟左右使明胶凝固。Preparation: Add 2.5ml 0.1% gelatin and let it stand for about 20 minutes to solidify the gelatin.
(1)60mm培养皿中加入2.5ml 0.1%gelatin,静置20分钟左右使明胶凝固。Huh7与Hep3B细胞株消化离心并计数,每个60mm培养皿中接种Huh7与Hep3B细胞各300个,并做三个复孔;(1) Add 2.5ml 0.1% gelatin to a 60mm petri dish and let it stand for about 20 minutes to solidify the gelatin. Huh7 and Hep3B cell lines were digested, centrifuged and counted. Each 60mm culture dish was inoculated with 300 Huh7 and Hep3B cells, and three replicate holes were made;
(2)细胞生长7-10天左右时显微镜下观察克隆大小,当克隆细胞数>50个时,收取细胞进 行考马斯亮蓝染色;(2) Observe the size of the clone under the microscope when the cells grow for about 7-10 days. When the number of cloned cells is more than 50, collect the cells for Coomassie brilliant blue staining;
(3)弃去培养基,常温1×PBS清洗培养皿,并吸走残存液体,每皿中加入2.5ml考马斯染料,常温染色20-30分钟;(3) Discard the culture medium, wash the petri dishes with 1×PBS at room temperature, and aspirate the remaining liquid, add 2.5ml Coomassie dye to each dish, and dye for 20-30 minutes at room temperature;
(4)染色结束,回收染料,并清水冲洗,室温晾干;(4) After dyeing, the dye is recovered, rinsed with clean water, and dried at room temperature;
(5)用凝胶成像系统,选择coomassie模式拍照并保存,计数克隆数量并分析。(5) Using the gel imaging system, select the coomassie mode to take pictures and save, count the number of clones and analyze.
如图3所示,经ATPlite试剂盒检测后发现,敲除TRAF2后,Huh7与Hep3B细胞增殖能力显著下降。As shown in Figure 3, after testing with the ATPlite kit, it was found that the proliferation ability of Huh7 and Hep3B cells was significantly reduced after TRAF2 was knocked out.
如图3所示,经考马斯亮蓝染色后发现,Huh7与Hep3B细胞分别敲除TRAF2基因后,Huh7与Hep3B细胞克隆形成显著下降。图4,在敲除TRAF2的Huh7细胞中重新转入TRAF2的过表达质粒后,Huh7细胞克隆形成能力显著强于对照组。As shown in Figure 3, after Coomassie brilliant blue staining, it was found that after the TRAF2 gene was knocked out in Huh7 and Hep3B cells respectively, the clone formation of Huh7 and Hep3B cells decreased significantly. Figure 4. After the TRAF2 knockout Huh7 cells were re-transformed into the TRAF2 overexpression plasmid, the Huh7 cells clone formation ability was significantly stronger than the control group.
实施例7 裸鼠皮下成瘤实验Example 7 Subcutaneous tumor formation experiment in nude mice
(1)细胞准备:敲除TRAF2的Huh7细胞及对照细胞正常培养,选取生长状态良好的细胞进行传代计数;(1) Cell preparation: Huh7 cells with TRAF2 knocked out and control cells are cultured normally, and cells with good growth status are selected for passage counting;
(2)裸鼠准备:4-5周龄,免疫缺陷雄性裸鼠购于江苏集萃药康生物公司,裸鼠饲养在免疫缺陷鼠专用房间,每只裸鼠用耳钉进行标记,并称量体重。根据实验设计每组5只裸鼠;(2) Preparation of nude mice: 4-5 weeks old, immunodeficient male nude mice were purchased from Jiangsu Jicui Yaokang Biotech Co., Ltd. The nude mice were raised in a room dedicated to immunodeficiency mice, and each nude mouse was marked with ear studs and weighed. weight. According to the experimental design, there are 5 nude mice per group;
(3)细胞计数:接种数量为:1×10 6个细胞,细胞消化离心后进行计数,用1×PBS重悬细胞,使得细胞悬液的浓度为1×10 7个细胞/ml。充分混匀细胞悬液后,每组各分装6支EP管,每管100μl; (3) Cell count: The number of cells inoculated is 1×10 6 cells, the cells are digested and centrifuged and counted, and the cells are resuspended in 1×PBS to make the concentration of the cell suspension 1×10 7 cells/ml. After fully mixing the cell suspension, each group is divided into 6 EP tubes, each tube 100μl;
(4)细胞接种:接种方式:皮下接种;接种部位:裸鼠侧腹部靠近臀部的位置;接种前用其中一管细胞悬液先润洗胰岛素针,100μl细胞悬液全部接种;(4) Cell inoculation: inoculation method: subcutaneous inoculation; inoculation site: the position of the side abdomen of nude mice near the buttocks; before inoculation, rinse the insulin needle with one tube of cell suspension and inoculate 100 μl of the cell suspension;
(5)肿瘤体积测量与裸鼠称重:每隔三天称量裸鼠体重与肿瘤长、短径并记录;(5) Tumor volume measurement and nude mouse weighing: Weigh the nude mouse body weight and tumor length and short diameter every three days and record;
(6)待肿瘤最大直径长至1-1.5cm左右时采用颈椎脱臼的方式处死裸鼠,取出皮下瘤拍照,称重,并分割肿瘤组织一部分用于WB,一部分用于RT-PCR,一部分用于免疫组化(固定在组织标本固定液中),剩余标本冻存于液氮中备用。(6) When the maximum diameter of the tumor grew to about 1-1.5cm, the nude mice were sacrificed by cervical dislocation, the subcutaneous tumor was taken out and photographed, weighed, and part of the tumor tissue was divided for WB, part for RT-PCR, and part for In immunohistochemistry (fixed in tissue specimen fixative), the remaining specimens are frozen in liquid nitrogen for later use.
如图4所示,Huh7-sgTRAF2细胞与Huh7-sgCtrl细胞制备成细胞悬液后,接种至裸鼠皮下,经14天观察记录后发现,敲除TRAF2后形成的皮下瘤的体积,重量均小于对照组。As shown in Figure 4, Huh7-sgTRAF2 cells and Huh7-sgCtrl cells were prepared into cell suspensions and inoculated into nude mice subcutaneously. After 14 days of observation and recording, it was found that the volume and weight of subcutaneous tumors formed after TRAF2 were knocked out were less than Control group.
实施例8 免疫共沉淀实验(Co-IP)Example 8 Co-immunoprecipitation experiment (Co-IP)
1.外源Co-IP1. External Co-IP
(1)前一天细胞铺板,第二天细胞转染质粒(具体质粒量根据实验设计来),转染48小时后细胞刮收取细胞,可直接进行第二步或放-80细胞℃备用;(1) The cells are plated the day before, and the cells are transfected with plasmid on the second day (the specific amount of plasmid is based on the experimental design). After 48 hours of transfection, the cells are scraped to collect the cells. You can proceed directly to the second step or put the cells at -80°C for use;
(2)裂解细胞,收取细胞上清至EP管中备用,预留出45μl全细胞裂解液并加入15μl 4×SDS  sample buffer作为对照(WCE)。若定量检测相互作用,则需要蛋白浓度;若只定性则直接进行第三步实验;(2) Lyse the cells, collect the cell supernatant and transfer it to the EP tube for later use. Reserve 45μl of whole cell lysate and add 15μl 4×SDS sample buffer as a control (WCE). If the interaction is quantitatively detected, the protein concentration is required; if it is only qualitative, proceed directly to the third step of the experiment;
(3)取适量偶联抗体的beads,加入1ml不加蛋白酶抑制剂的裂解液洗去beads保护液,4℃,5000rpm,离心1min,尽量弃去上清。(3) Take an appropriate amount of antibody-conjugated beads, add 1ml of lysis buffer without protease inhibitor to wash off the beads protection solution, centrifuge at 4°C, 5000rpm for 1min, and discard the supernatant as much as possible.
(4)将剩余的上清转移到已准备好的beads中,4℃冰箱,垂直摇床旋转孵育3小时;(4) Transfer the remaining supernatant to the prepared beads, and incubate for 3 hours in a refrigerator at 4°C on a vertical shaker;
(5)beads洗脱,4℃,5000rpm离心1min,弃上清,再5000rpm离心30s,吸走残余液。beads中加入1ml wash buffer,4℃,5000rpm离心1min洗涤beads,重复4次。最后一次离心结束后,再离心30s,用枪头吸尽残余液体;(5) Beads eluted, centrifuge at 5000 rpm at 4°C for 1 min, discard the supernatant, and centrifuge at 5000 rpm for 30 seconds to aspirate the remaining liquid. Add 1ml wash buffer to the beads, centrifuge at 5000rpm for 1min at 4℃ to wash the beads, repeat 4 times. After the last centrifugation, centrifuge for another 30s, and suck up the remaining liquid with a pipette tip;
(6)beads中加入适量2×SDS sample buffer,1100rpm,震荡15s,重复两次;(6) Add an appropriate amount of 2×SDS sample buffer to the beads, 1100rpm, shake for 15s, repeat twice;
(7)与WCE一起金属浴,100℃,WCE 10min,IP样品5min;(7) Metal bath with WCE, 100℃, WCE 10min, IP sample 5min;
(8)蛋白变性后,RT,13600rpm离心1min,之后进行WB检测。(8) After protein denaturation, centrifuge at 13600 rpm for 1 min at RT, and then perform WB detection.
2.内源Co-IP2. Endogenous Co-IP
内源免疫共沉淀步骤与外源类似,增加孵育抗体一步:细胞裂解上清液中,分别加入特定抗体与Normal IgG做为对照,4℃冰箱,孵育2-4小时;准备好20μl Protein G beads,方法同外源,将孵育过抗体的样品全部转入已加好的Protein G beads的EP管中,继续4℃冰箱,孵育3小时;如图5所示,经过外源与内源Co-IP检测发现,TRAF2与p62结合。The endogenous co-immunoprecipitation step is similar to the exogenous one, with an additional step of incubating antibodies: add specific antibodies and Normal IgG as controls to the cell lysis supernatant, and incubate in a refrigerator at 4°C for 2-4 hours; prepare 20μl Protein G beads , The method is the same as that of exogenous. Transfer all the samples that have been incubated with antibodies into EP tubes with added Protein G beads, and continue to incubate in a refrigerator at 4°C for 3 hours; as shown in Figure 5, after exogenous and endogenous Co- IP detection found that TRAF2 binds to p62.
实施例9 泛素化水平检测Example 9 Detection of Ubiquitination Level
本实验中p62蛋白泛素化水平检测采用外源Co-IP的方法,由于实验中带Ub的质粒为HA标签,因此实验采用HA beads进行。收取样品,裂解蛋白后测定浓度,每组样品中加入15μl HA beads,后与beads共孵育进行后续步骤。如图6所示,泛素E3连接酶TRAF2能够给p62添加泛素链。In this experiment, the p62 protein ubiquitination level was detected by the exogenous Co-IP method. Since the plasmid with Ub in the experiment is HA tag, the experiment was carried out with HA beads. Collect the samples, lyse the protein and determine the concentration, add 15μl HA beads to each group of samples, and then co-incubate with the beads for subsequent steps. As shown in Figure 6, the ubiquitin E3 ligase TRAF2 can add ubiquitin chains to p62.
实施例10 数据分析 Embodiment 10 Data analysis
本发明中,生存分析采用Kaplan-Meier法分析,实验数据采用SPSS 20.0软件进行统计分析。细胞增殖与存活实验组间差异采用方差分析(ANOVA)与Student’s t-test检验,p<0.05表示差异有统计学意义,结果用GraphPad Prism 8.0软件进行制图。In the present invention, the survival analysis adopts the Kaplan-Meier method to analyze, and the experimental data adopts SPSS 20.0 software for statistical analysis. Analysis of variance (ANOVA) and Student’s t-test test were used to test the differences between the cell proliferation and survival experiment groups. P<0.05 indicates that the differences are statistically significant. The results are graphed by GraphPad Prism 8.0 software.
上述实施例的说明只是用于理解本发明的方法及其核心思想。应当指出,本发明的实施方式并不受上述实施例的限制,对于本领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以对本发明进行若干改进和修饰,这些改进和修饰也将落入本发明权利要求的保护范围内。The description of the above-mentioned embodiments is only for understanding the method of the present invention and its core idea. It should be pointed out that the implementation of the present invention is not limited by the above-mentioned examples. For those of ordinary skill in the art, without departing from the principle of the present invention, several improvements and modifications can be made to the present invention. These improvements and Modifications will also fall within the protection scope of the claims of the present invention.

Claims (9)

  1. 用于诊断肝癌的标志物,所述的标志物为TRAF2。A marker for diagnosing liver cancer, and the marker is TRAF2.
  2. 权利要求1所述标志物在制备筛选肝癌诊治试剂或试剂盒中的用途。The use of the marker of claim 1 in the preparation of reagents or kits for screening diagnosis and treatment of liver cancer.
  3. 权利要求1所述标志物在制备预防或治疗肝癌的药物或药物组合物中的应用,所述药物组合物包括TRAF2功能性表达抑制剂。The use of the marker of claim 1 in the preparation of a medicine or a pharmaceutical composition for preventing or treating liver cancer, the pharmaceutical composition comprising a TRAF2 functional expression inhibitor.
  4. 权利要求1所述标志物在筛选肝癌诊治药物中的用途。Use of the marker of claim 1 in screening drugs for diagnosis and treatment of liver cancer.
  5. 用于检测权利要求1所述标志物表达水平的试剂,所述试剂包括如下引物:A reagent for detecting the expression level of the marker of claim 1, the reagent comprising the following primers:
    TRAF2-F:5'-GCCCTTCAACCAGAAGGTGAC-3’TRAF2-F: 5'-GCCCTTCAACCAGAAGGTGAC-3’
    TRAF2-R:5’-CCAACCCCCAGACACCAGTA-3’。TRAF2-R: 5'-CCAACCCCCAGACACCAGTA-3'.
  6. 根据权利要求3所述的试剂,其中扩增引物的扩增方法为TaqMan探针法。The reagent according to claim 3, wherein the amplification method of the amplification primer is TaqMan probe method.
  7. 权利要求2所述试剂在诊断肝癌和预测肝癌转移中的应用。The application of the reagent according to claim 2 in diagnosing liver cancer and predicting metastasis of liver cancer.
  8. 用于诊断肝癌的试剂盒,包含用于检测权利要求1所述标志物的试剂。A kit for diagnosing liver cancer, comprising a reagent for detecting the marker according to claim 1.
  9. 权利要求6所述试剂盒在诊断肝癌和预测肝癌转移中的应用。The use of the kit of claim 6 in diagnosing liver cancer and predicting liver cancer metastasis.
PCT/CN2020/099589 2020-06-10 2020-06-30 Marker for diagnosing liver cancer, detection reagent and application thereof WO2021248587A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
CN202010527090.5 2020-06-10
CN202010527090.5A CN111621567A (en) 2020-06-10 2020-06-10 Marker for diagnosing liver cancer, detection reagent and application thereof

Publications (1)

Publication Number Publication Date
WO2021248587A1 true WO2021248587A1 (en) 2021-12-16

Family

ID=72258524

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/CN2020/099589 WO2021248587A1 (en) 2020-06-10 2020-06-30 Marker for diagnosing liver cancer, detection reagent and application thereof

Country Status (2)

Country Link
CN (1) CN111621567A (en)
WO (1) WO2021248587A1 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111621567A (en) * 2020-06-10 2020-09-04 浙江大学 Marker for diagnosing liver cancer, detection reagent and application thereof
CN115453123B (en) * 2022-09-27 2024-06-14 浙江大学医学院附属第一医院 Application of biomarker in preparation of tumor diagnosis product

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104450886A (en) * 2014-11-03 2015-03-25 青岛大学附属医院 PCR reagent for detecting NF-kappa B signaling pathways in cells and application of PCR reagent
CN108324947A (en) * 2018-02-01 2018-07-27 武汉大学 The application of TNF receptor associated factor (TRAF) 4 and its inhibitor in preparing treatment fatty liver and relevant disease drug
CN111621567A (en) * 2020-06-10 2020-09-04 浙江大学 Marker for diagnosing liver cancer, detection reagent and application thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104450886A (en) * 2014-11-03 2015-03-25 青岛大学附属医院 PCR reagent for detecting NF-kappa B signaling pathways in cells and application of PCR reagent
CN108324947A (en) * 2018-02-01 2018-07-27 武汉大学 The application of TNF receptor associated factor (TRAF) 4 and its inhibitor in preparing treatment fatty liver and relevant disease drug
CN111621567A (en) * 2020-06-10 2020-09-04 浙江大学 Marker for diagnosing liver cancer, detection reagent and application thereof

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
ZANG YUN: "TTF1-NP Inhibit the Growth of Phc in Rats through Caspase Pathway of Endoplasmic Reticulum Stress", CHINESE MASTER'S THESES FULL-TEXT DATABASE, 30 May 2015 (2015-05-30), pages 1 - 46, XP055877704 *

Also Published As

Publication number Publication date
CN111621567A (en) 2020-09-04

Similar Documents

Publication Publication Date Title
Trouillas et al. Polysialylated neural cell adhesion molecules expressed in human pituitary tumors and related to extrasellar invasion
JP4848355B2 (en) Novel growth markers in clinical practice and their use for cancer prognosis or diagnosis
Yoshitake et al. Aldo-keto reductase family 1, member B10 in uterine carcinomas: a potential risk factor of recurrence after surgical therapy in cervical cancer
JP6281873B2 (en) Novel cancer markers and their use
WO2021248587A1 (en) Marker for diagnosing liver cancer, detection reagent and application thereof
JP2008517590A (en) Methods of using slag genes or their replication, transcription or expression products in identifying, diagnosing, preventing or treating the occurrence of cancer expansion and / or metastasis
Chen et al. Knockout of SRC-1 and SRC-3 in mice decreases cardiomyocyte proliferation and causes a noncompaction cardiomyopathy phenotype
CN112501299A (en) Method for predicting recurrence and metastasis of liver cancer and application
Wang et al. Role of lncRNA FTX in invasion, metastasis, and epithelial-mesenchymal transition of endometrial stromal cells caused by endometriosis by regulating the PI3K/Akt signaling pathway
Airik et al. Loss of Anks6 leads to YAP deficiency and liver abnormalities
US8206896B2 (en) Detection of uterine leiomyosarcoma using LMP2
WO2006023382A2 (en) Collagen vi and cancer
Xu et al. TRIM37 promotes gallbladder cancer proliferation by activating the Wnt/β-catenin pathway via ubiquitination of Axin1
WO2011129427A1 (en) Diagnostic agent and therapeutic agent for cancer
CN107144695B (en) Application of the Arl13b albumen in cancer diagnosis
CN110218796A (en) New target drone PCDHB2 for Bone of Breast Cancer transfer diagnosis and treatment
CN115389768A (en) Application of REG family protein in diagnosis, screening or evaluation of atherosclerosis
CN112980948B (en) Application of NFAT3 as therapeutic target in screening or preparing head and neck squamous cell carcinoma drugs
CN113293208B (en) Molecular marker related to lung cancer proliferation and metastasis and application thereof
CN112946268B (en) Application of HHLA2 as prognostic marker in preparation of liver cancer prognosis prediction kit
CN116200488B (en) Application of LncRNA RPAR in glioma diagnosis and treatment
US20170029898A1 (en) Novel method for screening for prostate cancer
CN114774547B (en) Molecular marker USP13 related to human osteosarcoma and application thereof
He et al. Elevated TEAD1 Expression is not an Independent Prognosis Factor of Hepatocellular Carcinoma.
CN106370853A (en) Predictive biomarker for human liver cancer and application of predictive biomarker

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 20939506

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 20939506

Country of ref document: EP

Kind code of ref document: A1