WO2019067955A1 - Compositions and methods for regulating let-7 micro rna targets - Google Patents

Compositions and methods for regulating let-7 micro rna targets Download PDF

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Publication number
WO2019067955A1
WO2019067955A1 PCT/US2018/053511 US2018053511W WO2019067955A1 WO 2019067955 A1 WO2019067955 A1 WO 2019067955A1 US 2018053511 W US2018053511 W US 2018053511W WO 2019067955 A1 WO2019067955 A1 WO 2019067955A1
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cancer
compound
acid
pharmaceutically acceptable
cells
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French (fr)
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Martina Roos
William E. Lowry
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University of California Berkeley
University of California San Diego UCSD
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University of California Berkeley
University of California San Diego UCSD
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/47Quinolines; Isoquinolines
    • A61K31/4738Quinolines; Isoquinolines ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/4741Quinolines; Isoquinolines ortho- or peri-condensed with heterocyclic ring systems condensed with ring systems having oxygen as a ring hetero atom, e.g. tubocuraran derivatives, noscapine, bicuculline
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/02Antineoplastic agents specific for leukemia

Definitions

  • the present disclosure provides compounds that offer a novel targeted therapeutic approach for AML.
  • the present disclosure provides methods of treating disease associated with cancer and cell-cycle regulation.
  • Compounds 44, 61, and 62 disclosed herein show robust upregulation of let-7 micro RNAs (miRNA) levels in various, cytogenetically different AML cell lines.
  • the small non-coding let-7 micro RNA family is suggested to play a key role as tumor suppressor by targeting a wide variety of oncogenes such as HMGA2, cMYC and KRAS.
  • Compound 44 offers high clinical and therapeutic significance by restoring normal levels of the endogenous tumor suppressor miRNA let-7 ultimately leading differentiation of leukemic blast cells, inhibition of LSC growth and disease progression.
  • FIGs 1A-1E show the design of screen to identify regulators of let-7 activity.
  • FIG. 1A Schematic of the let-7 Luciferase Screen. Human liver cancer cell line (HUH) is transfected each with the let-7-Luciferase and PsiCheck2-control reporter plasmids. Each transfected line is plated on its own 384 plate and both pinned with its respective compound set. The treated cells are incubated at 37C for 48 hours. ViviRen reads out the Renilla luciferase and Cell Titer Glo is a readout of cell health.
  • FIG. IB Schematic of the let- 7 Luciferase Assay.
  • FIG. 1C Transfection of let-7 mimics silences a variety of let-7 target genes as measured by RT-PCR.
  • FIG. ID Example of the fidelity of the let-7 reporter construct.
  • FIG. IE Cells transfected with the let-7 mimic showed a reduction in the readings of renilla, but the constitutive firefly luciferase was stable.
  • FIGs. 2A-2E show a secondary screen to identify compounds that suppress let-7 targets.
  • FIG. 2A a secondary screen using both constitutive and let-7 sensitive reporter to identify high confidence hits.
  • FIG. 2B tertiary screening of compounds for effect on expression of HMGA2, an established let-7 target gene by RT-PCR.
  • FIG. 2C RT-PCR for additional let-7 target genes after treatment with compounds that came out of tertiary screen.
  • FIG. 2D RT-PCR for small RNAs to determine whether any compounds regulate let-7 levels.
  • FIGs. 3A-3D show the identification of a compound that reliably suppresses expression of HMGA2.
  • FIG. 3A A dose curve of treatment with 44, as measured by the expression level of HMGA2-long.
  • FIG. 3B Treating Huh7 cells with 44 at luM for various times showed specific activity at just 8 hours.
  • FIG. 3C Treatment with 44 for two days showed specific suppression of HMGA2-long (PULSE), whereas two days after removal of these compounds, levels of HMGA2 returned to baseline (CHASE), indicating the effect of the compound is reversible.
  • FIG. 4 61 and 62 show similar effect on expression of let-7 targets such as HMGA2, NMYC and LIN28B.
  • FIGs. 5A-5D show that 44, 61 and 62 are PDE inhibitors that activate CREB.
  • FIG. 5A Huh cells were treated with 44 or 61 for 48 hours and then immunostained with an antibody that recognizes the phosphorylated version of CREB, which is typically translocated to the nucleus when active. Quantification shown on the right.
  • FIG. 5B RNA-sequencing of Huh cells treated with 44 in triplicate showed strong induction of CREB target genes (FOSB, FOS, CREB5, and ATF3).
  • FIG. 5C Dose response of 44, 61, and 62 for an effect on let-7 target gene, HMGA2.
  • FIG. 5A Huh cells were treated with 44 or 61 for 48 hours and then immunostained with an antibody that recognizes the phosphorylated version of CREB, which is typically translocated to the nucleus when active. Quantification shown on the right.
  • FIG. 5B RNA-sequencing of Huh cells treated with 44 in
  • RT-PCR for direct CREB targets FOSB and CFOS shows that 44, 61, and 62 all stimulate CREB target gene expression.
  • FIGs. 6A-6C show that extended treatment of cancer cells with let-7 inducing compounds blocks their growth.
  • FIG. 6A Equal numbers of Huh were plated across replicate wells and treated with the indicated compounds. Each day, several wells of each treatment condition were counted. Low dose of 44 slowed the growth of this cancer cell line.
  • FIG. 6B Treatment of Huh and three human squamous cell carcinoma cell lines (TSU, 22B, and 686) also showed a strong effect of 44 on cell growth at 5 days of treatment.
  • FIGs. 7A-7E show that 44 induces apoptosis and AML cell differentiation via inhibition of PI3K signaling and unfolded protein response pathway.
  • FIG. 7A shows fold changes of direct let-7 target genes ⁇ HMGAl, IL6, MYC) of genes involved in the PI3K and unfolded protein response pathway in Kasumi-1 AML cells treated with 5 ⁇ 44 and compared to control.
  • FIG. 7A shows fold changes of direct let-7 target genes ⁇ HMGAl, IL6, MYC
  • FIG. 7C shows fold changes of let- 7a- 1, -b and f-1 of Kasumi-1 cells transduced with s C/EBP , s C/ ⁇ or s CHOP, normalized to s Control and selected with puromycin for 3 days. Statistics: two-way Anova.
  • FIG. 7D shows flow Cytometry showing % of CD34 + CD38 " cells (left) and mean percentage numbers of CD34 + CD38 " Kasumi-1 cells 16h post treatment with 5 ⁇ 44 or control.
  • FIG. 7E shows cytotoxicity assessment via relative ATP production 12h post treatment with controls, clinically approved demethylating agent 5- Azacitidine (5-Aza, 5 ⁇ ) or 44 (5 - 1 ⁇ ). * P ⁇ 0.05, ** P ⁇ 0.01, *** P ⁇ 0.001, **** P ⁇ 0.0001.
  • FIGs. 8A-8C show that 44 prolongs survival in AML Xenograft models and decreases tumor burden.
  • FIG. 8B shows bioluminescence imaging (BLI) of NSG mice subcutaneously transplanted with Kasumi-1 - Luciferase expressing
  • FIGs. 9A-9C show that 44 inhibits leukemic stem cell proliferation in vivo.
  • FIG. 9A Schematic representation of NSG mice transplanted with AML patient cells treated with 10 ⁇ 44 or control for 16 h.
  • FIG. 9B Flow cytometry of hCD45+ cells (human AML) and
  • FIG. 9C % human AML engraftment (top, overall engraftment) and % LSCs of overall engraftment (bottom, LSC engraftment) in NSG bone marrow 12 weeks post transplantation of primary AML patient cells treated with 10 ⁇ 44 or control.
  • the Let-7 micro RNA family exerts its tumor suppressor and antiproliferative activities by repressing several oncogenes and by regulating key regulators of the cell cycle, cell differentiation, and apoptotic pathways (Bussing I, et al. Trends Mol Med. 2008;14(9):400-9; Johnson SM, et al. Cell. 2005;120(5):635-47).
  • Downregulation of Let-7 is a common phenomenon in several cancers including acute myeloid leukemia (AML), and restoration of normal Let-7 expression has been found to prevent cancer growth (Viswanathan SR, et al. Nat Genet. 2009;41(7):843-8). Cancer cells have been shown to exhibit reduced malignancy and motility when LIN28 is suppressed and let-7 activity is elevated (Viswanathan SR, et al. Nat Genet. 2009;41(7):843-8).
  • C/EBPs CCAAT/enhancer binding proteins
  • bYP basic region leucine zipper
  • C/EBPa, C/ ⁇ and C/ ⁇ are predominantly expressed in granulocytes, monocytes and eosinophils while C/ ⁇ is found at later stages of differentiation of granulocytes and T cells 5"7 .
  • C/EBPs are key mediators of normal myeloid differentiation as they proper control of cell cycle progression, metabolism and differentiation.
  • C/EBP expression is suppressed as a result of common leukemia- associated genetic and epigenetic alterations, such as oncogenic fusion proteins RUNXl-ETO 8 , FLT3-ITD 9 or CEBPA promoter methylation 10 .
  • Alterations in the CEBPa, - ⁇ , - ⁇ gene or in pathways that down-modulate C/EBP expression at the transcriptional, translational, or post- translational levels likely contribute to myeloid transformation by inhibiting myeloid
  • MicroRNAs are 19-22 nucleotide (nt) short non-coding RNAs that hybridize to complementary mRNA targets and either lead to their decay, cleavage or transcriptional inhibition 11"13 .
  • Aberrant miRNA expression has been shown to play an active role in malignant transformation including leukemia 14-16
  • the tumor suppressor miRNA let-7 family comprising 12 members expressed from 9 different loci (on chromosomes 3, 9, 12, 19, 21, 22 and X), represses several oncogenes including RAS, MYC, LIN28B and IL6 19 as well as cell cycle regulators such as CyclinD and E2F 20
  • let-7 family members can be inhibited by oncogenic transcription factor MYC in lymphoma and hepatocellular carcinoma 21 ' 22 and jumonji AT-rich interactive domain IB (J ARID IB) proteins in breast tumor tissue .
  • J ARID IB jumonji AT-rich interactive domain IB
  • C/EBPa binds to the promoter of the let- 7a 1, -fl and -d cluster located on chromosome 9, and consequently promotes let-7 miRNA expression 24 .
  • chromatin immunoprecipitation showed let-7f promoter as a direct target of C/ ⁇ 25 .
  • LIN28A and its homologue LIN28B as key regulators of let-7 biogenesis 26-30 through direct binding to either pre-let-7 and/or pri-let-7, thereby impairing their processing into mature, functional miRNAs.
  • LIN28A/B is upregulated in over 15% of human cancers 31 and cancer stem cells 32-36 and is associated with poor clinical outcome 34 ⁇ 37"40 5 AML included 41 . Moreover, LIN28 42-44 overexpression and let-7 45-47 loss have been associated with resistance of cancer stem cells to radiation treatment and chemotherapy.
  • Let-7 is a molecular marker and a potential therapeutic in cancer therapy such as AML.
  • the present disclosure identifies three compounds that upregulate the endogenous expression of tumor suppressor micro RNAs Let-7, efficiently suppress Let-7 target genes involved in cancer pathogenesis such as HMGA2, cMYC and Lin28b ( Figures 3B-3E, 4C), show strong growth inhibitory effects ( Figures 6A-6C), and abolish colony forming capacity in multiple cancer cell types including Leukemic stem cells in a variety of cytogenetically different AML cell Lines.
  • these compounds upregulate let-7 microRNA levels and induce apoptosis of AML cells through inhibition of UPR and PI3K pathway.
  • 44 inhibits AML tumor growth in AML Xenografts, significantly prolongs animals' survival and inhibits human leukemic stem cell proliferation in vivo.
  • the present invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of formula I:
  • composition further comprises a pharmaceutically acceptable excipient.
  • R 1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, R 1 is phenyl substituted at the 2- and 4- positions with lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, R 1 is phenyl substituted at the 2-position with a lower alkoxy group, such as methoxy or ethoxy. In certain embodiments, the compound is selected from the following compounds:
  • the present invention relates to a method of increasing let-7 micro RNA levels in a patient, comprising administering an effective amount a compound of formula I:
  • R is substituted or unsubstituted phenyl
  • R 1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy.
  • Rl is phenyl substituted at the 2- and 4- positions with lower alkoxy groups, such as methoxy or ethoxy.
  • Rl is phenyl substituted at the 2-position with a lower alkoxy group, such as methoxy or ethoxy.
  • the compound is selected from the following compounds:
  • the patient has a cancer.
  • the cancer is acute myeloid leukemia, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm's tumor.
  • the cancer is liver cancer, skin cancer, such as squamous cell carcinoma, lung cancer, or acute myeloid leukemia.
  • compositions and methods of the present invention may be utilized to treat an individual in need thereof.
  • the individual is a mammal such as a human, or a non-human mammal.
  • the composition or the compound is preferably administered as a pharmaceutical composition comprising, for example, a compound of the invention and a pharmaceutically acceptable carrier.
  • Pharmaceutically acceptable carriers include, for example, aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters.
  • aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters.
  • the aqueous solution is pyrogen-free, or substantially pyrogen-free.
  • the excipients can be chosen, for example, to effect delayed release of an agent or to selectively target one or more cells, tissues or organs.
  • the pharmaceutical composition can be in dosage unit form such as tablet, capsule (including sprinkle capsule and gelatin capsule), granule, lyophile for reconstitution, powder, solution, syrup, suppository, injection or the like.
  • the composition can also be present in a transdermal delivery system, e.g., a skin patch.
  • the composition can also be present in a solution suitable for topical administration, such as a lotion, cream, or ointment.
  • a pharmaceutically acceptable carrier can contain physiologically acceptable agents that act, for example, to stabilize, increase solubility or to increase the absorption of a compound such as a compound of the invention.
  • physiologically acceptable agents include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients.
  • carbohydrates such as glucose, sucrose or dextrans
  • antioxidants such as ascorbic acid or glutathione
  • chelating agents such ascorbic acid or glutathione
  • low molecular weight proteins or other stabilizers or excipients include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients.
  • the choice of a pharmaceutically acceptable carrier, including a physiologically acceptable agent depends, for example, on the route of administration of the composition.
  • the pharmaceutical composition also can be a liposome or other polymer matrix, which can have incorporated therein, for example, a compound of the invention.
  • Liposomes for example, which comprise phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.
  • phrases "pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
  • phrases "pharmaceutically acceptable carrier” as used herein means a
  • composition or vehicle such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material.
  • a liquid or solid filler such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material.
  • Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient.
  • materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide;
  • a pharmaceutical composition can be administered to a subject by any of a number of routes of administration including, for example, orally (for example, drenches as in aqueous or non-aqueous solutions or suspensions, tablets, capsules (including sprinkle capsules and gelatin capsules), boluses, powders, granules, pastes for application to the tongue);
  • routes of administration including, for example, orally (for example, drenches as in aqueous or non-aqueous solutions or suspensions, tablets, capsules (including sprinkle capsules and gelatin capsules), boluses, powders, granules, pastes for application to the tongue);
  • the compound may also be formulated for inhalation.
  • a compound may be simply dissolved or suspended in sterile water. Details of appropriate routes of administration and compositions suitable for same can be found in, for example, U.S. Pat. Nos. 6,110,973, 5,763,493, 5,731,000, 5,541,231, 5,427,798, 5,358,970 and 4,172,896, as well as in patents cited therein.
  • the formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy.
  • the amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration.
  • the amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of one hundred percent, this amount will range from about 1 percent to about ninety-nine percent of active ingredient, preferably from about 5 percent to about 70 percent, most preferably from about 10 percent to about 30 percent.
  • Methods of preparing these formulations or compositions include the step of bringing into association an active compound, such as a compound of the invention, with the carrier and, optionally, one or more accessory ingredients.
  • an active compound such as a compound of the invention
  • the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
  • Formulations of the invention suitable for oral administration may be in the form of capsules (including sprinkle capsules and gelatin capsules), cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), lyophile, powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in-water or water- in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient.
  • capsules including sprinkle capsules and gelatin capsules
  • cachets pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth)
  • lyophile powders,
  • compositions or compounds may also be administered as a bolus, electuary or paste.
  • the active ingredient is mixed with one or more pharmaceutically acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents,
  • pharmaceutically acceptable carriers such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose
  • compositions may also comprise buffering agents.
  • Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
  • a tablet may be made by compression or molding, optionally with one or more accessory ingredients.
  • Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent.
  • Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
  • the tablets, and other solid dosage forms of the pharmaceutical compositions may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres.
  • compositions may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use.
  • These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner.
  • embedding compositions that can be used include polymeric substances and waxes.
  • the active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
  • Liquid dosage forms useful for oral administration include pharmaceutically acceptable emulsions, lyophiles for reconstitution, microemulsions, solutions, suspensions, syrups and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, cyclodextrins and derivatives thereof, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
  • inert diluents commonly used in the art, such
  • the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
  • Suspensions in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
  • Dosage forms for the topical or transdermal administration include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants.
  • the active compound may be mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that may be required.
  • the ointments, pastes, creams and gels may contain, in addition to an active compound, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • Powders and sprays can contain, in addition to an active compound, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances.
  • Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
  • Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body.
  • dosage forms can be made by dissolving or dispersing the active compound in the proper medium.
  • Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate of such flux can be controlled by either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel.
  • parenteral administration and “administered parenterally” as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intraocular (such as intravitreal), intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
  • intravenous, intraocular such as intravitreal
  • intramuscular intraarterial
  • intrathecal intracapsular
  • intraorbital intracardiac
  • intradermal intraperitoneal
  • transtracheal subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
  • compositions suitable for parenteral administration comprise one or more active compounds in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
  • aqueous and nonaqueous carriers examples include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate.
  • polyols such as glycerol, propylene glycol, polyethylene glycol, and the like
  • vegetable oils such as olive oil
  • injectable organic esters such as ethyl oleate.
  • Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
  • compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
  • the absorption of the drug in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
  • Injectable depot forms are made by forming microencapsulated matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions that are compatible with body tissue.
  • active compounds can be given per se or as a pharmaceutical composition containing, for example, 0.1 to 99.5% (more preferably, 0.5 to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
  • Methods of introduction may also be provided by rechargeable or biodegradable devices.
  • Various slow release polymeric devices have been developed and tested in vivo in recent years for the controlled delivery of drugs, including proteinaceous biopharmaceuticals.
  • a variety of biocompatible polymers including hydrogels, including both biodegradable and non-degradable polymers, can be used to form an implant for the sustained release of a compound at a particular target site.
  • Actual dosage levels of the active ingredients in the pharmaceutical compositions may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
  • the selected dosage level will depend upon a variety of factors including the activity of the particular compound or combination of compounds employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion of the particular compound(s) being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound(s) employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
  • a physician or veterinarian having ordinary skill in the art can readily determine and prescribe the therapeutically effective amount of the pharmaceutical composition required.
  • the physician or veterinarian could start doses of the pharmaceutical composition or compound at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved.
  • therapeutically effective amount is meant the concentration of a compound that is sufficient to elicit the desired therapeutic effect. It is generally understood that the effective amount of the compound will vary according to the weight, sex, age, and medical history of the subject. Other factors which influence the effective amount may include, but are not limited to, the severity of the patient's condition, the disorder being treated, the stability of the compound, and, if desired, another type of therapeutic agent being administered with the compound of the invention.
  • a larger total dose can be delivered by multiple administrations of the agent.
  • Methods to determine efficacy and dosage are known to those skilled in the art (Isselbacher et al. (1996) Harrison's Principles of Internal Medicine 13 ed., 1814-1882, herein incorporated by reference).
  • a suitable daily dose of an active compound used in the compositions and methods of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above.
  • the effective daily dose of the active compound may be administered as one, two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms.
  • the active compound may be administered two or three times daily. In preferred embodiments, the active compound will be administered once daily.
  • the patient receiving this treatment is any animal in need, including primates, in particular humans; and other mammals such as equines, cattle, swine, sheep, cats, and dogs; poultry; and pets in general.
  • compounds of the invention may be used alone or conjointly administered with another type of therapeutic agent.
  • contemplated salts of the invention include, but are not limited to, alkyl, dialkyl, trialkyl or tetra-alkyl ammonium salts.
  • contemplated salts of the invention include, but are not limited to, L-arginine, benenthamine, benzathine, betaine, calcium hydroxide, choline, deanol, diethanolamine, diethylamine, 2-(diethylamino)ethanol,
  • contemplated salts of the invention include, but are not limited to, Na, Ca, K, Mg, Zn or other metal salts.
  • contemplated salts of the invention include, but are not limited to, 1 -hydroxy-2-naphthoic acid, 2,2-dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, 1-ascorbic acid, 1-aspartic acid, benzenesulfonic acid, benzoic acid, (+)-camphoric acid, (+)- camphor- 10-sulfonic acid, capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane- 1,2-disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gent
  • the pharmaceutically acceptable acid addition salts can also exist as various solvates, such as with water, methanol, ethanol, dimethylformamide, and the like. Mixtures of such solvates can also be prepared.
  • the source of such solvate can be from the solvent of
  • wetting agents such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
  • antioxidants examples include: (1) water-soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium
  • antioxidants such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like
  • metal- chelating agents such as citric acid
  • EDTA ethylenediamine tetraacetic acid
  • sorbitol sorbitol
  • tartaric acid tartaric acid
  • phosphoric acid and the like.
  • agent is used herein to denote a chemical compound (such as an organic or inorganic compound, a mixture of chemical compounds), a biological macromolecule (such as a nucleic acid, an antibody, including parts thereof as well as humanized, chimeric and human antibodies and monoclonal antibodies, a protein or portion thereof, e.g., a peptide, a lipid, a carbohydrate), or an extract made from biological materials such as bacteria, plants, fungi, or animal (particularly mammalian) cells or tissues.
  • Agents include, for example, agents whose structure is known, and those whose structure is not known.
  • a “patient,” “subject,” or “individual” are used interchangeably and refer to either a human or a non-human animal. These terms include mammals, such as humans, primates, livestock animals (including bovines, porcines, etc.), companion animals (e.g., canines, felines, etc.) and rodents (e.g., mice and rats).
  • Treating refers to taking steps to obtain beneficial or desired results, including clinical results.
  • treatment is an approach for obtaining beneficial or desired results, including clinical results.
  • Beneficial or desired clinical results can include, but are not limited to, alleviation or amelioration of one or more symptoms or conditions, diminishment of extent of disease, stabilized (i.e. not worsening) state of disease, preventing spread of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable.
  • Treatment can also mean prolonging survival as compared to expected survival if not receiving treatment.
  • preventing is art-recognized, and when used in relation to a condition, such as a local recurrence (e.g., pain), a disease such as cancer, a syndrome complex such as heart failure or any other medical condition, is well understood in the art, and includes administration of a composition which reduces the frequency of, or delays the onset of, symptoms of a medical condition in a subject relative to a subject which does not receive the composition.
  • a condition such as a local recurrence (e.g., pain)
  • a disease such as cancer
  • a syndrome complex such as heart failure or any other medical condition
  • prevention of cancer includes, for example, reducing the number of detectable cancerous growths in a population of patients receiving a prophylactic treatment relative to an untreated control population, and/or delaying the appearance of detectable cancerous growths in a treated population versus an untreated control population, e.g., by a statistically and/or clinically significant amount.
  • administering or "administration of a substance, a compound or an agent to a subject can be carried out using one of a variety of methods known to those skilled in the art.
  • a compound or an agent can be administered, intravenously, arterially, intradermally, intramuscularly, intraperitoneally, subcutaneously, ocularly, sublingually, orally (by ingestion), intranasally (by inhalation), intraspinally, intracerebrally, and transdermally (by absorption, e.g., through a skin duct).
  • a compound or agent can also appropriately be introduced by rechargeable or biodegradable polymeric devices or other devices, e.g., patches and pumps, or formulations, which provide for the extended, slow or controlled release of the compound or agent.
  • Administering can also be performed, for example, once, a plurality of times, and/or over one or more extended periods.
  • a compound or an agent is administered orally, e.g., to a subject by ingestion.
  • the orally administered compound or agent is in an extended release or slow release formulation, or administered using a device for such slow or extended release.
  • the phrase "conjoint administration” refers to any form of administration of two or more different therapeutic agents such that the second agent is administered while the previously administered therapeutic agent is still effective in the body (e.g., the two agents are simultaneously effective in the patient, which may include synergistic effects of the two agents).
  • the different therapeutic compounds can be administered either in the same formulation or in separate formulations, either concomitantly or sequentially.
  • an individual who receives such treatment can benefit from a combined effect of different therapeutic agents.
  • a “therapeutically effective amount” or a “therapeutically effective dose” of a drug or agent is an amount of a drug or an agent that, when administered to a subject will have the intended therapeutic effect. The full therapeutic effect does not necessarily occur by
  • a therapeutically effective amount may be administered in one or more administrations.
  • the precise effective amount needed for a subject will depend upon, for example, the subject's size, health and age, and the nature and extent of the condition being treated, such as cancer or MDS. The skilled worker can readily determine the effective amount for a given situation by routine experimentation.
  • acyl is art-recognized and refers to a group represented by the general formula hydrocarbylC(O)-, preferably alkylC(O)-.
  • acylamino is art-recognized and refers to an amino group substituted with an acyl group and may be represented, for example, by the formula hydrocarbylC(0)NH-.
  • acyloxy is art-recognized and refers to a group represented by the general formula hydrocarbylC(0)0-, preferably alkylC(0)0-.
  • alkoxy refers to an alkyl group having an oxygen attached thereto.
  • alkoxy groups include methoxy, ethoxy, propoxy, tert-butoxy and the like.
  • alkoxyalkyl refers to an alkyl group substituted with an alkoxy group and may be represented by the general formula alkyl-O-alkyl.
  • alkyl refers to saturated aliphatic groups, including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl-substituted cycloalkyl groups, and cycloalkyl-substituted alkyl groups.
  • a straight chain or branched chain alkyl has 30 or fewer carbon atoms in its backbone (e.g., Ci-30 for straight chains, C3-30 for branched chains), and more preferably 20 or fewer.
  • alkyl as used throughout the specification, examples, and claims is intended to include both unsubstituted and substituted alkyl groups, the latter of which refers to alkyl moieties having substituents replacing a hydrogen on one or more carbons of the hydrocarbon backbone, including haloalkyl groups such as trifluoromethyl and 2,2,2- trifluoroethyl, etc.
  • C x - y or "C x -C y ", when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups that contain from x to y carbons in the chain.
  • Coalkyl indicates a hydrogen where the group is in a terminal position, a bond if internal.
  • a Ci-6alkyl group for example, contains from one to six carbon atoms in the chain.
  • alkylamino refers to an amino group substituted with at least one alkyl group.
  • alkylthio refers to a thiol group substituted with an alkyl group and may be represented by the general formula alkylS-.
  • amide refers to a group wherein R 9 and R 10 each independently represent a hydrogen or hydrocarbyl group, or R 9 and R 10 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • amine and “amino” are art-recognized and refer to both unsubstituted and substituted amines and salts thereof, e.g., a moiety that can be represented by
  • R 9 , R 10 , and R 10 ' each independently represent a hydrogen or a hydrocarbyl group, or R 9 and R 10 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • aminoalkyl refers to an alkyl group substituted with an amino group.
  • aralkyl refers to an alkyl group substituted with an aryl group.
  • aryl as used herein include substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon.
  • the ring is a 5- to 7-membered ring, more preferably a 6-membered ring.
  • aryl also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
  • carboxylate is art-recognized and refers to a group wherein R 9 and R 10 independently represent hydrogen or a hydrocarbyl group.
  • Carbocyclylalkyl refers to an alkyl group substituted with a carbocycle group.
  • carbocycle refers to a non- aromatic saturated or unsaturated ring in which each atom of the ring is carbon.
  • a carbocycle ring contains from 3 to 10 atoms, more preferably from 5 to 7 atoms.
  • Carbocyclylalkyl refers to an alkyl group substituted with a carbocycle group.
  • carbonate is art-recognized and refers to a group -OCO2-.
  • esters refers to a group -C(0)OR 9 wherein R 9 represents a hydrocarbyl group.
  • ether refers to a hydrocarbyl group linked through an oxygen to another hydrocarbyl group. Accordingly, an ether substituent of a hydrocarbyl group may be hydrocarbyl-O-. Ethers may be either symmetrical or unsymmetrical. Examples of ethers include, but are not limited to, heterocycle-O-heterocycle and aryl-O-heterocycle. Ethers include "alkoxyalkyl” groups, which may be represented by the general formula alkyl-O-alkyl.
  • halo and halogen as used herein means halogen and includes chloro, fluoro, bromo, and iodo.
  • heteroalkyl and “heteroaralkyl”, as used herein, refers to an alkyl group substituted with a hetaryl group.
  • heteroaryl and “hetaryl” include substituted or unsubstituted aromatic single ring structures, preferably 5- to 7-membered rings, more preferably 5- to 6-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms.
  • heteroaryl and “hetaryl” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heteroaromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, pyrazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
  • heteroatom as used herein means an atom of any element other than carbon or hydrogen. Preferred heteroatoms are nitrogen, oxygen, and sulfur.
  • heterocyclylalkyl refers to an alkyl group substituted with a heterocycle group.
  • heterocyclyl refers to substituted or unsubstituted non-aromatic ring structures, preferably 3- to 10-membered rings, more preferably 3- to 7-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms.
  • heterocyclyl and “heterocyclic” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heterocyclic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Heterocyclyl groups include, for example, piperidine, piperazine, pyrrolidine, morpholine, lactones, lactams, and the like.
  • Hydrocarbyl groups include, but are not limited to aryl, heteroaryl, carbocycle, heterocycle, alkyl, alkenyl, alkynyl, and combinations thereof.
  • hydroxyalkyl refers to an alkyl group substituted with a hydroxy group.
  • lower when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups where there are ten or fewer atoms in the substituent, preferably six or fewer.
  • acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy substituents defined herein are respectively lower acyl, lower acyloxy, lower alkyl, lower alkenyl, lower alkynyl, or lower alkoxy, whether they appear alone or in combination with other substituents, such as in the recitations hydroxyalkyl and aralkyl (in which case, for example, the atoms within the aryl group are not counted when counting the carbon atoms in the alkyl substituent).
  • polycyclyl refers to two or more rings (e.g., cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls) in which two or more atoms are common to two adjoining rings, e.g., the rings are "fused rings".
  • Each of the rings of the polycycle can be substituted or unsubstituted.
  • each ring of the polycycle contains from 3 to 10 atoms in the ring, preferably from 5 to 7.
  • sulfate is art-recognized and refers to the group -OSC H, or a
  • R 9 and R 10 independently represents hydrogen or hydrocarbyl.
  • sulfoxide is art-recognized and refers to the group-S(O)-.
  • sulfonate is art-recognized and refers to the group SC H, or a
  • substitution refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds.
  • the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds.
  • the permissible substituents can be one or more and the same or different for appropriate organic compounds.
  • the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms.
  • Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic mo
  • thioalkyl refers to an alkyl group substituted with a thiol group.
  • thioester refers to a group -C(0)SR 9 or -SC(0)R 9 wherein R 9 represents a hydrocarbyl.
  • thioether is equivalent to an ether, wherein the oxygen is replaced with a sulfur.
  • urea is art-recognized and may be represented by the general formula
  • R 9 and R 10 independently represent hydrogen or a hydrocarbyl.
  • modulate as used herein includes the inhibition or suppression of a function or activity (such as cell proliferation) as well as the enhancement of a function or activity.
  • compositions, excipients, adjuvants, polymers and other materials and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
  • “Pharmaceutically acceptable salt” or “salt” is used herein to refer to an acid addition salt or a basic addition salt which is suitable for or compatible with the treatment of patients.
  • pharmaceutically acceptable acid addition salt means any nontoxic organic or inorganic salt of any base compounds represented by Formula I.
  • Illustrative inorganic acids which form suitable salts include hydrochloric, hydrobromic, sulfuric and phosphoric acids, as well as metal salts such as sodium monohydrogen orthophosphate and potassium hydrogen sulfate.
  • Illustrative organic acids that form suitable salts include mono-, di-, and tricarboxylic acids such as glycolic, lactic, pyruvic, malonic, succinic, glutaric, fumaric, malic, tartaric, citric, ascorbic, maleic, benzoic, phenylacetic, cinnamic and salicylic acids, as well as sulfonic acids such as p-toluene sulfonic and methanesulfonic acids. Either the mono or di-acid salts can be formed, and such salts may exist in either a hydrated, solvated or
  • the acid addition salts of compounds of Formula I are more soluble in water and various hydrophilic organic solvents, and generally demonstrate higher melting points in comparison to their free base forms.
  • the selection of the appropriate salt will be known to one skilled in the art.
  • Other non-pharmaceutically acceptable salts e.g., oxalates, may be used, for example, in the isolation of compounds of Formula I for laboratory use, or for subsequent conversion to a pharmaceutically acceptable acid addition salt.
  • pharmaceutically acceptable basic addition salt means any non-toxic organic or inorganic base addition salt of any acid compounds represented by Formula I or any of their intermediates.
  • Illustrative inorganic bases which form suitable salts include lithium, sodium, potassium, calcium, magnesium, or barium hydroxide.
  • Illustrative organic bases which form suitable salts include aliphatic, alicyclic, or aromatic organic amines such as methylamine, trimethylamine and picoline or ammonia. The selection of the appropriate salt will be known to a person skilled in the art. Many of the compounds useful in the methods and compositions of this disclosure have at least one stereogenic center in their structure.
  • This stereogenic center may be present in a R or a S configuration, said R and S notation is used in correspondence with the rules described in Pure Appl. Chem. (1976), 45, 11-30.
  • the disclosure contemplates all stereoisomeric forms such as enantiomeric and diastereoisomeric forms of the compounds, salts, prodrugs or mixtures thereof (including all possible mixtures of stereoisomers). See, e.g., WO 01/062726.
  • Prodrug or “pharmaceutically acceptable prodrug” refers to a compound that is metabolized, for example hydrolyzed or oxidized, in the host after administration to form the compound of the present disclosure (e.g., compounds of formula I).
  • Typical examples of prodrugs include compounds that have biologically labile or cleavable (protecting) groups on a functional moiety of the active compound.
  • Prodrugs include compounds that can be oxidized, reduced, aminated, deaminated, hydroxylated, dehydroxylated, hydrolyzed, dehydrolyzed, alkylated, dealkylated, acylated, deacylated, phosphorylated, or dephosphorylated to produce the active compound.
  • prodrugs using ester or phosphoramidate as biologically labile or cleavable (protecting) groups are disclosed in U.S. Patents 6,875,751, 7,585,851, and 7,964,580, the disclosures of which are incorporated herein by reference.
  • the prodrugs of this disclosure are metabolized to produce a compound of Formula I.
  • the present disclosure includes within its scope, prodrugs of the compounds described herein. Conventional procedures for the selection and preparation of suitable prodrugs are described, for example, in "Design of Prodrugs" Ed. H. Bundgaard, Elsevier, 1985.
  • phrases "pharmaceutically acceptable carrier” as used herein means a
  • log of solubility is used in the art to quantify the aqueous solubility of a compound.
  • the aqueous solubility of a compound significantly affects its absorption and distribution characteristics. A low solubility often goes along with a poor absorption.
  • LogS value is a unit stripped logarithm (base 10) of the solubility measured in mol/liter.
  • let-7 activity can be precisely assayed using a luciferase-based method (PSI-Check2 let-7 8X, Fig 1 A).
  • the Renilla luciferase is flanked by 8 repeats of let-7 target sequence and its mRNA will be subject to a higher rate of degradation in the presence of a higher let-7 activity.
  • the control Firefly luciferase was driven by a constitutive promoter (Fig 1A).
  • MCF7, MCF15, Huh7 and Huh7.5.1 were anylyzed to assay the detectable let-7 activity.
  • a cell line with stable integration of the let-7 reporter construct was created.
  • a Neomycin resistance cassette was cloned into the PSI-Check2 let-7- ⁇ ucif erase, and then the reporter plasmid was stably introduced into the Huh7.5.1 cell line and selected with G418 for 3 weeks (Fig IB).
  • the stable cell line was subjected to dual-glo luciferase assay, where it displayed a stable luciferase unit per cell in both Firefly and Renilla (Fig ID).
  • this Huh7.5.1 let-7 luciferase reporter line Huh7.5.1 L7L was transfected with siRNA against LIN28B, as well as let-7 mimics (Fig ID).
  • siRNA effectively reduced LIN28B expression by at least 90%.
  • mature microRNA levels rose about 2 to 3 fold for all let-7 family members.
  • the let-7 activity was reduced by 25-50%, as assayed by dual-glo luciferase.
  • transfection of mimics of let- 7s was used to determine how sensitive the reporter was to changes in let-7 levels (Fig IE and F). This demonstrated that strong induction of let-7 levels by direct transfection was able to effectively silence the reporter (Fig IE).
  • the initial screens with the let-7 reporter stably introduced into Huh cells generated significant numbers of false positives in both directions. As expected, many of the false positive appeared to target luciferase enzymes, and not let-7 activity.
  • replicate wells were transiently transfected with a PSI-Check2 plasmid that either contained the let-7 seed sequence or a clean version that should not be regulated by let-7.
  • the signal change in the screen was then quantified as a function of the effect on the luciferase without let-7 sites, and as a function of internal controls on each reporter consisting of alternate luciferase gene (firefly) driven by a constitutive promoter.
  • AML Acute Myeloid Leukemia
  • Fig 3A-D Focusing on 44, dose curve, time course, and pulse-chase experiments were performed (Fig 3A-D). Varying concentrations of these compounds were applied to Huh7 cells and assayed by RT-PCR for the let-7 sensitive version of HMGA2. These dose curve experiments showed that 44 was effective at luM, and maximally effective at 5uM (Fig 3 A). To determine the time course for activity of 44, cells were treated for various times. RT-PCR for HMGA2 showed that 44 could suppress expression of this let-7 target gene in as few as 8 hours (Fig 3B). Finally, a pulse-chase of treatment was performed with 44 to determine if the effect on let-7 targets was permanent or instigated a feed forward program of suppression of let-7 targets.
  • Phosphodiesterase 10A was identified as a potential target of 44, 61 and 62.
  • the role of phosphodiesterase is to regulate levels of cyclic- AMP (cAMP)(Fig 4). Therefore, if 44 inhibits PDE10, one would expect an increase in cAMP levels leading to CREB activation.
  • Huh cells were treated with 44 and 61 and then stained with an antibody that recognizes phosphorylated CREB, consistent with activation of cAMP signaling. Both 44 and 61 strongly induced levels of nuclear phosopho-CREB (Fig 5A).
  • RNA-seq was carried out to identify which genes are changed in response to treatment with these compounds and whether let-7 targets are enriched amongst these gene expression changes (Fig 5B).
  • Fig 5B A wide variety of genes appeared to be both induced and suppressed.
  • the table below shows a list of genes up- and down regulated by at least 2 fold in response to treatment with 44:
  • Example 4 44 inhibits UPR and PI3K signaling pathways
  • RNAseq was carried out to identify which genes are changed in response to treatment with these compounds and whether let-7 targets are enriched amongst these genes.
  • Example 6 Inhibition of leukemic stem cell proliferation in vivo
  • Ambros V The functions of animal microRNAs. Nature. 2004;431 :350-355.
  • CCAAT/enhancer binding protein alpha up-regulates microRNA let-7a-l in lung cancer cells by direct binding. Cancer Cell Int. 2016;16: 17.
  • Ayyar K Reddy KVR. Transcription factor CCAAT/enhancer-binding protein- beta upregulates microRNA, let-7f-l in human endocervical cells. Am J Reprod Immunol.
  • LIN28B promotes colon cancer progression and metastasis. Cancer research. 2011;71 :4260- 4268.
  • Molenaar JJ Domingo-Fernandez R, Ebus ME, et al. LIN28B induces neuroblastoma and enhances MYCN levels via let-7 suppression. Nature genetics.

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Abstract

La présente invention concerne des composés qui sont capables de supprimer les cibles de let-7, d'inhiber la phosphodiestérase, de stimuler cAMP et d'inhiber l'activité de croissance de cellules cancéreuses. L'invention concerne également des méthodes de traitement du cancer.The present invention provides compounds that are capable of suppressing let-7 targets, inhibiting phosphodiesterase, stimulating cAMP, and inhibiting the growth activity of cancer cells. The invention also relates to methods of treating cancer.

Description

COMPOSITIONS AND METHODS FOR REGULATING LET-7 MICRO RNA TARGETS
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the benefit of U.S. Provisional Application No. 62/566,054, filed September 29, 2017, the contents of which are hereby incorporated by reference in their entirety.
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH
This invention was made with government support under Grant Number GM099134, awarded by the National Institutes of Health. The government has certain rights in the invention.
BACKGROUND
There is a need for targeted therapies in the current AML treatment landscape. Current treatment strategies are dominated by generic chemotherapeutic agents, predominantly cytarabine and daunorubicin, which have been the treatment of choice for the past four decades. For patients whose leukemia cells have an FLT3 gene mutation, the drug midostaurin might be given along with chemotherapy. However, these current strategies are at best too ill-equipped to target LSCs. While chronic myeloid leukemia and even some de novo AML may retain a relatively clear developmental hierarchy, upon AML disease progression and/ or relapse following therapy there can be a dramatic loss of developmental structure and specific targets leading to outgrowth of LSCs. Traditional but also new therapeutic approaches for AML mainly focus on single targets which are thought to be uniquely expressed in LSCs. However, given the LSCs heterogeneity and clonal evolution a single targeted therapy might not be successful.
SUMMARY OF THE INVENTION
In certain aspects, the present disclosure provides compounds that offer a novel targeted therapeutic approach for AML. In other aspects, the present disclosure provides methods of treating disease associated with cancer and cell-cycle regulation. Compounds 44, 61, and 62 disclosed herein show robust upregulation of let-7 micro RNAs (miRNA) levels in various, cytogenetically different AML cell lines. The small non-coding let-7 micro RNA family is suggested to play a key role as tumor suppressor by targeting a wide variety of oncogenes such as HMGA2, cMYC and KRAS. Compound 44 offers high clinical and therapeutic significance by restoring normal levels of the endogenous tumor suppressor miRNA let-7 ultimately leading differentiation of leukemic blast cells, inhibition of LSC growth and disease progression.
BRIEF DESCRIPTION OF THE DRAWINGS
FIGs 1A-1E show the design of screen to identify regulators of let-7 activity. FIG. 1A: Schematic of the let-7 Luciferase Screen. Human liver cancer cell line (HUH) is transfected each with the let-7-Luciferase and PsiCheck2-control reporter plasmids. Each transfected line is plated on its own 384 plate and both pinned with its respective compound set. The treated cells are incubated at 37C for 48 hours. ViviRen reads out the Renilla luciferase and Cell Titer Glo is a readout of cell health. FIG. IB: Schematic of the let- 7 Luciferase Assay. Psicheck2 plasmid was manipulated to contain the let-7 seed sequence 8 times in tandem and linked to the renilla sequence. Therefore, when let-7 activity is increased, the renilla luminescence will be decreased. FIG. 1C: Transfection of let-7 mimics silences a variety of let-7 target genes as measured by RT-PCR. FIG. ID: Example of the fidelity of the let-7 reporter construct. FIG. IE: Cells transfected with the let-7 mimic showed a reduction in the readings of renilla, but the constitutive firefly luciferase was stable. FIG. IF: RT-PCR for mature let-7s in response to let-7 transfection demonstrated the efficacy of the induction of let-7 levels. All RT-qPCR experiments are graphed as mean +/- s.e.m. (n=3), * p < 0.05, ** p < 0.01, *** p < 0.001.
FIGs. 2A-2E show a secondary screen to identify compounds that suppress let-7 targets. FIG. 2A: a secondary screen using both constitutive and let-7 sensitive reporter to identify high confidence hits. FIG. 2B: tertiary screening of compounds for effect on expression of HMGA2, an established let-7 target gene by RT-PCR. FIG. 2C: RT-PCR for additional let-7 target genes after treatment with compounds that came out of tertiary screen. FIG. 2D: RT-PCR for small RNAs to determine whether any compounds regulate let-7 levels. FIG. 2E: RT-PCR for detectable mature let-7 family members in AML cell lines in response to treatment with two doses of 44. All RT-qPCR experiments are graphed as mean +/- s.e.m. (n=3), * p < 0.05, ** p < 0.01, *** p < 0.001.
FIGs. 3A-3D show the identification of a compound that reliably suppresses expression of HMGA2. FIG. 3A: A dose curve of treatment with 44, as measured by the expression level of HMGA2-long. FIG. 3B: Treating Huh7 cells with 44 at luM for various times showed specific activity at just 8 hours. FIG. 3C: Treatment with 44 for two days showed specific suppression of HMGA2-long (PULSE), whereas two days after removal of these compounds, levels of HMGA2 returned to baseline (CHASE), indicating the effect of the compound is reversible. FIG. 3D: RT-PCR for let-7 target genes in response to 44. All RT-qPCR experiments are graphed as mean +/- s.e.m. (n=3), * p < 0.05, ** p < 0.01, *** p < 0.001.
FIG. 4: 61 and 62 show similar effect on expression of let-7 targets such as HMGA2, NMYC and LIN28B.
FIGs. 5A-5D show that 44, 61 and 62 are PDE inhibitors that activate CREB. FIG. 5A: Huh cells were treated with 44 or 61 for 48 hours and then immunostained with an antibody that recognizes the phosphorylated version of CREB, which is typically translocated to the nucleus when active. Quantification shown on the right. FIG. 5B: RNA-sequencing of Huh cells treated with 44 in triplicate showed strong induction of CREB target genes (FOSB, FOS, CREB5, and ATF3). FIG. 5C: Dose response of 44, 61, and 62 for an effect on let-7 target gene, HMGA2. FIG. 5D: RT-PCR for direct CREB targets FOSB and CFOS shows that 44, 61, and 62 all stimulate CREB target gene expression. Fig. 5E: RT-PCR for CREB target genes in AML cell lines in response to treatment with 44. All RT-qPCR experiments are graphed as mean +/- s.e.m. (n=3), * p < 0.05, ** p < 0.01, *** p < 0.001.
FIGs. 6A-6C show that extended treatment of cancer cells with let-7 inducing compounds blocks their growth. FIG. 6A: Equal numbers of Huh were plated across replicate wells and treated with the indicated compounds. Each day, several wells of each treatment condition were counted. Low dose of 44 slowed the growth of this cancer cell line. FIG. 6B: Treatment of Huh and three human squamous cell carcinoma cell lines (TSU, 22B, and 686) also showed a strong effect of 44 on cell growth at 5 days of treatment. FIG. 6C: Various lung, liver, and AML cancer cell lines were plated with escalating doses of 44, and cell viability was assayed by ATP-luciferase at 48 hours . All growth proliferation assays are graphed as mean +/- SD (n=3), * p < 0.05, ** p < 0.01, *** p < 0.001.
FIGs. 7A-7E show that 44 induces apoptosis and AML cell differentiation via inhibition of PI3K signaling and unfolded protein response pathway. FIG. 7A shows fold changes of direct let-7 target genes {HMGAl, IL6, MYC) of genes involved in the PI3K and unfolded protein response pathway in Kasumi-1 AML cells treated with 5 μΜ 44 and compared to control. FIG. 7B shows the fold change of mRNA expression levels of direct let-7 target genes {MYC, KRAS, HMGAl) as well as genes involved in the PI3K and oxidative stress response pathway in primary AML patient samples after treatment with 10 μΜ 44, normalized to control, n = 3, statistics: two- tailed Student's /-test. FIG. 7C shows fold changes of let- 7a- 1, -b and f-1 of Kasumi-1 cells transduced with s C/EBP , s C/ΕΒΡε or s CHOP, normalized to s Control and selected with puromycin for 3 days. Statistics: two-way Anova. FIG. 7D shows flow Cytometry showing % of CD34+ CD38" cells (left) and mean percentage numbers of CD34+CD38" Kasumi-1 cells 16h post treatment with 5 μΜ 44 or control. FIG. 7E shows cytotoxicity assessment via relative ATP production 12h post treatment with controls, clinically approved demethylating agent 5- Azacitidine (5-Aza, 5 μΜ) or 44 (5 - 1 μΜ). * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001.
FIGs. 8A-8C show that 44 prolongs survival in AML Xenograft models and decreases tumor burden. FIG. 8 A shows survival of systemic MOLM13 AML Xenograft daily injected intraperitoneally (IP) with 10 mg/kg 44 or vehicle, n = 7, statistics: log-rank test. FIG. 8B shows bioluminescence imaging (BLI) of NSG mice subcutaneously transplanted with Kasumi-1 - Luciferase expressing AML tumors after two single intravenous (IV) injections of 44 at 10 mg/kg, n = 5, statistics: two-tailed Student's /-test. FIG. 8C shows survival of systemic MV4-11 AML Xenograft after three single IV injection of 10 mg/kg CasMa-nanoparticle formulated 44 (n = 7), CasMA-vehicle (n = 7) or vehicle (n =5). * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001.
FIGs. 9A-9C show that 44 inhibits leukemic stem cell proliferation in vivo. FIG. 9A Schematic representation of NSG mice transplanted with AML patient cells treated with 10 μΜ 44 or control for 16 h. FIG. 9B Flow cytometry of hCD45+ cells (human AML) and
hCD33+CD34+CD38-CD45RA+ leukemic stem cells (LSCs) in NSGs 12 weeks post transplantation of primary AML cells treated with 44 or control. FIG. 9C % human AML engraftment (top, overall engraftment) and % LSCs of overall engraftment (bottom, LSC engraftment) in NSG bone marrow 12 weeks post transplantation of primary AML patient cells treated with 10 μΜ 44 or control. Statistics: two-tailed Student's /-test. *** P < 0.001
DETAILED DESCRIPTION OF THE INVENTION
The Let-7 micro RNA family exerts its tumor suppressor and antiproliferative activities by repressing several oncogenes and by regulating key regulators of the cell cycle, cell differentiation, and apoptotic pathways (Bussing I, et al. Trends Mol Med. 2008;14(9):400-9; Johnson SM, et al. Cell. 2005;120(5):635-47). Downregulation of Let-7 is a common phenomenon in several cancers including acute myeloid leukemia (AML), and restoration of normal Let-7 expression has been found to prevent cancer growth (Viswanathan SR, et al. Nat Genet. 2009;41(7):843-8). Cancer cells have been shown to exhibit reduced malignancy and motility when LIN28 is suppressed and let-7 activity is elevated (Viswanathan SR, et al. Nat Genet. 2009;41(7):843-8).
As further background, the CCAAT/enhancer binding proteins (C/EBPs) belong to a family of basic region leucine zipper (bYP) transcription factors which are involved in tissue differentiation, metabolism and immune response and play important roles in growth regulation of tissues1'2. In the hematopoietic system, all members of the C/EBP family (α,β,γ,δ,ε,ζ) are expressed during myeloid development3,4. C/EBPa, C/ΕΒΡβ and C/ΕΒΡγ are predominantly expressed in granulocytes, monocytes and eosinophils while C/ΕΒΡε is found at later stages of differentiation of granulocytes and T cells5"7. Thus, C/EBPs are key mediators of normal myeloid differentiation as they proper control of cell cycle progression, metabolism and differentiation. In leukemia, AML included, C/EBP expression is suppressed as a result of common leukemia- associated genetic and epigenetic alterations, such as oncogenic fusion proteins RUNXl-ETO8, FLT3-ITD9 or CEBPA promoter methylation10. Alterations in the CEBPa, -ε, -δ gene or in pathways that down-modulate C/EBP expression at the transcriptional, translational, or post- translational levels likely contribute to myeloid transformation by inhibiting myeloid
differentiation while favoring myeloid progenitor cell cycle progression.
MicroRNAs (miRNAs) are 19-22 nucleotide (nt) short non-coding RNAs that hybridize to complementary mRNA targets and either lead to their decay, cleavage or transcriptional inhibition11"13. Aberrant miRNA expression has been shown to play an active role in malignant transformation including leukemia 14-16 Systematic evaluation of the prognostic value of miRNA expression in human cancers, including several AML subtypes, found that decreased expression of let-7 miRNAs is most frequently associated with poor prognosis 16"18. The tumor suppressor miRNA let-7 family, comprising 12 members expressed from 9 different loci (on chromosomes 3, 9, 12, 19, 21, 22 and X), represses several oncogenes including RAS, MYC, LIN28B and IL6 19 as well as cell cycle regulators such as CyclinD and E2F 20 At the transcriptional level, it has been reported that let-7 family members can be inhibited by oncogenic transcription factor MYC in lymphoma and hepatocellular carcinoma21'22 and jumonji AT-rich interactive domain IB (J ARID IB) proteins in breast tumor tissue . More recently, two publications provided evidence that C/EBPs control expression of tumor suppressor microRNA let-7 by binding to their promoters. In lung cancer cells, it was found that C/EBPa binds to the promoter of the let- 7a 1, -fl and -d cluster located on chromosome 9, and consequently promotes let-7 miRNA expression24. In human endocervical cells, chromatin immunoprecipitation (CHIP) showed let-7f promoter as a direct target of C/ΕΒΡβ25. Moreover, at the posttranscriptional level, a rush of papers described LIN28A and its homologue LIN28B as key regulators of let-7 biogenesis 26-30 through direct binding to either pre-let-7 and/or pri-let-7, thereby impairing their processing into mature, functional miRNAs. LIN28A/B is upregulated in over 15% of human cancers 31 and cancer stem cells 32-36 and is associated with poor clinical outcome 34·37"40 5 AML included 41. Moreover, LIN28 42-44 overexpression and let-7 45-47 loss have been associated with resistance of cancer stem cells to radiation treatment and chemotherapy.
Given that C/EBPs are frequently inhibited and correlate with low let-7 microRNA transcription, it is conceivable that correction of aberrant C/EBP expression may override the activities of oncogenic fusion proteins, and promote let-7 microRNA expression at the transcriptional level which - in turn - target and downregulate a panoply of oncogenic driver genes ultimately leading to AML death.
Therefore, Let-7 is a molecular marker and a potential therapeutic in cancer therapy such as AML. The present disclosure identifies three compounds that upregulate the endogenous expression of tumor suppressor micro RNAs Let-7, efficiently suppress Let-7 target genes involved in cancer pathogenesis such as HMGA2, cMYC and Lin28b (Figures 3B-3E, 4C), show strong growth inhibitory effects (Figures 6A-6C), and abolish colony forming capacity in multiple cancer cell types including Leukemic stem cells in a variety of cytogenetically different AML cell Lines.
Figure imgf000007_0001
44
Figure imgf000008_0001
61
Figure imgf000008_0002
62
These compounds induce apoptosis through inhibition of phosphodiesterases (PDE) (Figure 4D) and the multi-client chaperone heat shock protein 90 (HSP90) by regulating cAMP signaling. These compounds lead to the loss of pro-survival signaling through degradation of HSP90 client proteins and inhibition of pro-survival signaling downstream of phosphodiesterase 10A (PDE 10a) and CREB. These compounds affected genes related to CREB signaling (Figure 5A), particularly induction of ATF3, C-FOS, and FOSB (Figures 5B, 5D-5E).
Furthermore, these compounds upregulate let-7 microRNA levels and induce apoptosis of AML cells through inhibition of UPR and PI3K pathway. Moreover, 44 inhibits AML tumor growth in AML Xenografts, significantly prolongs animals' survival and inhibits human leukemic stem cell proliferation in vivo.
In some aspects, the present invention relates to a pharmaceutical composition comprising a compound of formula I:
Figure imgf000008_0003
and wherein the pharmaceutical composition further comprises a pharmaceutically acceptable excipient.
In certain embodiments, R1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, R1 is phenyl substituted at the 2- and 4- positions with lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, R1 is phenyl substituted at the 2-position with a lower alkoxy group, such as methoxy or ethoxy. In certain embodiments, the compound is selected from the following compounds:
Figure imgf000009_0001
or a pharmaceutically acceptable salt thereof.
In other aspects, the present invention relates to a method of increasing let-7 micro RNA levels in a patient, comprising administering an effective amount a compound of formula I:
Figure imgf000009_0002
wherein R is substituted or unsubstituted phenyl;
or a pharmaceutically acceptable salt thereof.
In certain embodiments, R1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, Rl is phenyl substituted at the 2- and 4- positions with lower alkoxy groups, such as methoxy or ethoxy. In certain embodiments, Rl is phenyl substituted at the 2-position with a lower alkoxy group, such as methoxy or ethoxy. In certain embodiments, the compound is selected from the following compounds:
Figure imgf000010_0001
or a pharmaceutically acceptable salt thereof.
In certain embodiments, the patient has a cancer. In some embodiments, the cancer is acute myeloid leukemia, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm's tumor. In certain embodiments, the cancer is liver cancer, skin cancer, such as squamous cell carcinoma, lung cancer, or acute myeloid leukemia.
Pharmaceutical Compositions
The compositions and methods of the present invention may be utilized to treat an individual in need thereof. In certain embodiments, the individual is a mammal such as a human, or a non-human mammal. When administered to an animal, such as a human, the composition or the compound is preferably administered as a pharmaceutical composition comprising, for example, a compound of the invention and a pharmaceutically acceptable carrier.
Pharmaceutically acceptable carriers are well known in the art and include, for example, aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters. In preferred embodiments, when such pharmaceutical compositions are for human administration, particularly for invasive routes of administration (i.e., routes, such as injection or implantation, that circumvent transport or diffusion through an epithelial barrier), the aqueous solution is pyrogen-free, or substantially pyrogen-free. The excipients can be chosen, for example, to effect delayed release of an agent or to selectively target one or more cells, tissues or organs. The pharmaceutical composition can be in dosage unit form such as tablet, capsule (including sprinkle capsule and gelatin capsule), granule, lyophile for reconstitution, powder, solution, syrup, suppository, injection or the like. The composition can also be present in a transdermal delivery system, e.g., a skin patch. The composition can also be present in a solution suitable for topical administration, such as a lotion, cream, or ointment.
A pharmaceutically acceptable carrier can contain physiologically acceptable agents that act, for example, to stabilize, increase solubility or to increase the absorption of a compound such as a compound of the invention. Such physiologically acceptable agents include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients. The choice of a pharmaceutically acceptable carrier, including a physiologically acceptable agent, depends, for example, on the route of administration of the composition. The preparation or pharmaceutical composition can be a selfemulsifying drug delivery system or a
selfmicroemulsifying drug delivery system. The pharmaceutical composition (preparation) also can be a liposome or other polymer matrix, which can have incorporated therein, for example, a compound of the invention. Liposomes, for example, which comprise phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.
The phrase "pharmaceutically acceptable" is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
The phrase "pharmaceutically acceptable carrier" as used herein means a
pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material. Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient. Some examples of materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other non-toxic compatible substances employed in pharmaceutical formulations.
A pharmaceutical composition (preparation) can be administered to a subject by any of a number of routes of administration including, for example, orally (for example, drenches as in aqueous or non-aqueous solutions or suspensions, tablets, capsules (including sprinkle capsules and gelatin capsules), boluses, powders, granules, pastes for application to the tongue);
absorption through the oral mucosa (e.g., sublingually); subcutaneously; transdermally (for example as a patch applied to the skin); and topically (for example, as a cream, ointment or spray applied to the skin). The compound may also be formulated for inhalation. In certain embodiments, a compound may be simply dissolved or suspended in sterile water. Details of appropriate routes of administration and compositions suitable for same can be found in, for example, U.S. Pat. Nos. 6,110,973, 5,763,493, 5,731,000, 5,541,231, 5,427,798, 5,358,970 and 4,172,896, as well as in patents cited therein.
The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration. The amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of one hundred percent, this amount will range from about 1 percent to about ninety-nine percent of active ingredient, preferably from about 5 percent to about 70 percent, most preferably from about 10 percent to about 30 percent.
Methods of preparing these formulations or compositions include the step of bringing into association an active compound, such as a compound of the invention, with the carrier and, optionally, one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
Formulations of the invention suitable for oral administration may be in the form of capsules (including sprinkle capsules and gelatin capsules), cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), lyophile, powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in-water or water- in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient.
Compositions or compounds may also be administered as a bolus, electuary or paste.
To prepare solid dosage forms for oral administration (capsules (including sprinkle capsules and gelatin capsules), tablets, pills, dragees, powders, granules and the like), the active ingredient is mixed with one or more pharmaceutically acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents, such as, for example, cetyl alcohol and glycerol monostearate; (8) absorbents, such as kaolin and bentonite clay; (9) lubricants, such a talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof; (10) complexing agents, such as, modified and unmodified cyclodextrins; and (11) coloring agents. In the case of capsules (including sprinkle capsules and gelatin capsules), tablets and pills, the pharmaceutical compositions may also comprise buffering agents. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
The tablets, and other solid dosage forms of the pharmaceutical compositions, such as dragees, capsules (including sprinkle capsules and gelatin capsules), pills and granules, may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres. They may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use. These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. The active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
Liquid dosage forms useful for oral administration include pharmaceutically acceptable emulsions, lyophiles for reconstitution, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active ingredient, the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, cyclodextrins and derivatives thereof, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents. Suspensions, in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
Dosage forms for the topical or transdermal administration include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. The active compound may be mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that may be required.
The ointments, pastes, creams and gels may contain, in addition to an active compound, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
Powders and sprays can contain, in addition to an active compound, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body. Such dosage forms can be made by dissolving or dispersing the active compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate of such flux can be controlled by either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel.
The phrases "parenteral administration" and "administered parenterally" as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intraocular (such as intravitreal), intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion. Pharmaceutical compositions suitable for parenteral administration comprise one or more active compounds in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
Examples of suitable aqueous and nonaqueous carriers that may be employed in the pharmaceutical compositions of the invention include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
In some cases, in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
Injectable depot forms are made by forming microencapsulated matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions that are compatible with body tissue. For use in the methods of this invention, active compounds can be given per se or as a pharmaceutical composition containing, for example, 0.1 to 99.5% (more preferably, 0.5 to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
Methods of introduction may also be provided by rechargeable or biodegradable devices. Various slow release polymeric devices have been developed and tested in vivo in recent years for the controlled delivery of drugs, including proteinaceous biopharmaceuticals. A variety of biocompatible polymers (including hydrogels), including both biodegradable and non-degradable polymers, can be used to form an implant for the sustained release of a compound at a particular target site.
Actual dosage levels of the active ingredients in the pharmaceutical compositions may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
The selected dosage level will depend upon a variety of factors including the activity of the particular compound or combination of compounds employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion of the particular compound(s) being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound(s) employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the therapeutically effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the pharmaceutical composition or compound at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved. By "therapeutically effective amount" is meant the concentration of a compound that is sufficient to elicit the desired therapeutic effect. It is generally understood that the effective amount of the compound will vary according to the weight, sex, age, and medical history of the subject. Other factors which influence the effective amount may include, but are not limited to, the severity of the patient's condition, the disorder being treated, the stability of the compound, and, if desired, another type of therapeutic agent being administered with the compound of the invention. A larger total dose can be delivered by multiple administrations of the agent. Methods to determine efficacy and dosage are known to those skilled in the art (Isselbacher et al. (1996) Harrison's Principles of Internal Medicine 13 ed., 1814-1882, herein incorporated by reference).
In general, a suitable daily dose of an active compound used in the compositions and methods of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above.
If desired, the effective daily dose of the active compound may be administered as one, two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms. In certain embodiments of the present invention, the active compound may be administered two or three times daily. In preferred embodiments, the active compound will be administered once daily.
The patient receiving this treatment is any animal in need, including primates, in particular humans; and other mammals such as equines, cattle, swine, sheep, cats, and dogs; poultry; and pets in general.
In certain embodiments, compounds of the invention may be used alone or conjointly administered with another type of therapeutic agent.
The present disclosure includes the use of pharmaceutically acceptable salts of compounds of the invention in the compositions and methods of the present invention. In certain embodiments, contemplated salts of the invention include, but are not limited to, alkyl, dialkyl, trialkyl or tetra-alkyl ammonium salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, L-arginine, benenthamine, benzathine, betaine, calcium hydroxide, choline, deanol, diethanolamine, diethylamine, 2-(diethylamino)ethanol,
ethanolamine, ethylenediamine, N-methylglucamine, hydrabamine, lH-imidazole, lithium, L- lysine, magnesium, 4-(2-hydroxyethyl)morpholine, piperazine, potassium, 1 -(2- hydroxyethyl)pyrrolidine, sodium, triethanolamine, tromethamine, and zinc salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, Na, Ca, K, Mg, Zn or other metal salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, 1 -hydroxy-2-naphthoic acid, 2,2-dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, 1-ascorbic acid, 1-aspartic acid, benzenesulfonic acid, benzoic acid, (+)-camphoric acid, (+)- camphor- 10-sulfonic acid, capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane- 1,2-disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gentisic acid, d-glucoheptonic acid, d-gluconic acid, d-glucuronic acid, glutamic acid, glutaric acid, glycerophosphoric acid, glycolic acid, hippuric acid, hydrobromic acid, hydrochloric acid, isobutyric acid, lactic acid, lactobionic acid, lauric acid, maleic acid, 1-malic acid, malonic acid, mandelic acid, methanesulfonic acid , naphthalene- 1, 5 -disulfonic acid, naphthalene-2-sulfonic acid, nicotinic acid, nitric acid, oleic acid, oxalic acid, palmitic acid, pamoic acid, phosphoric acid, proprionic acid, 1-pyroglutamic acid, salicylic acid, sebacic acid, stearic acid, succinic acid, sulfuric acid, 1-tartaric acid, thiocyanic acid, p-toluenesulfonic acid, trifluoroacetic acid, and undecylenic acid acid salts.
The pharmaceutically acceptable acid addition salts can also exist as various solvates, such as with water, methanol, ethanol, dimethylformamide, and the like. Mixtures of such solvates can also be prepared. The source of such solvate can be from the solvent of
crystallization, inherent in the solvent of preparation or crystallization, or adventitious to such solvent.
Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
Examples of pharmaceutically acceptable antioxidants include: (1) water-soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium
metabisulfite, sodium sulfite and the like; (2) oil-soluble antioxidants, such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and (3) metal- chelating agents, such as citric acid,
ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
Definitions
Unless otherwise defined herein, scientific and technical terms used in this application shall have the meanings that are commonly understood by those of ordinary skill in the art.
Generally, nomenclature used in connection with, and techniques of, chemistry, cell and tissue culture, molecular biology, cell and cancer biology, neurobiology, neurochemistry, virology, immunology, microbiology, pharmacology, genetics and protein and nucleic acid chemistry, described herein, are those well known and commonly used in the art.
The methods and techniques of the present disclosure are generally performed, unless otherwise indicated, according to conventional methods well known in the art and as described in various general and more specific references that are cited and discussed throughout this specification. See, e.g. "Principles of Neural Science", McGraw-Hill Medical, New York, N. Y. (2000); Motulsky, "Intuitive Biostatistics", Oxford University Press, Inc. (1995); Lodish et al., "Molecular Cell Biology, 4th ed ", W. H. Freeman & Co., New York (2000); Griffiths et al, "Introduction to Genetic Analysis, 7th ed.", W. H. Freeman & Co., NY. (1999); and Gilbert et al, "Developmental Biology, 6th ed.", Sinauer Associates, Inc., Sunderland, MA (2000).
Chemistry terms used herein, unless otherwise defined herein, are used according to conventional usage in the art, as exemplified by "The McGraw-Hill Dictionary of Chemical Terms", Parker S., Ed., McGraw-Hill, San Francisco, C.A. (1985).
All of the above, and any other publications, patents and published patent applications referred to in this application are specifically incorporated by reference herein. In case of conflict, the present specification, including its specific definitions, will control.
The term "agent" is used herein to denote a chemical compound (such as an organic or inorganic compound, a mixture of chemical compounds), a biological macromolecule (such as a nucleic acid, an antibody, including parts thereof as well as humanized, chimeric and human antibodies and monoclonal antibodies, a protein or portion thereof, e.g., a peptide, a lipid, a carbohydrate), or an extract made from biological materials such as bacteria, plants, fungi, or animal (particularly mammalian) cells or tissues. Agents include, for example, agents whose structure is known, and those whose structure is not known.
A "patient," "subject," or "individual" are used interchangeably and refer to either a human or a non-human animal. These terms include mammals, such as humans, primates, livestock animals (including bovines, porcines, etc.), companion animals (e.g., canines, felines, etc.) and rodents (e.g., mice and rats).
"Treating" a condition or patient refers to taking steps to obtain beneficial or desired results, including clinical results. As used herein, and as well understood in the art, "treatment" is an approach for obtaining beneficial or desired results, including clinical results. Beneficial or desired clinical results can include, but are not limited to, alleviation or amelioration of one or more symptoms or conditions, diminishment of extent of disease, stabilized (i.e. not worsening) state of disease, preventing spread of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable. "Treatment" can also mean prolonging survival as compared to expected survival if not receiving treatment.
The term "preventing" is art-recognized, and when used in relation to a condition, such as a local recurrence (e.g., pain), a disease such as cancer, a syndrome complex such as heart failure or any other medical condition, is well understood in the art, and includes administration of a composition which reduces the frequency of, or delays the onset of, symptoms of a medical condition in a subject relative to a subject which does not receive the composition. Thus, prevention of cancer includes, for example, reducing the number of detectable cancerous growths in a population of patients receiving a prophylactic treatment relative to an untreated control population, and/or delaying the appearance of detectable cancerous growths in a treated population versus an untreated control population, e.g., by a statistically and/or clinically significant amount.
"Administering" or "administration of a substance, a compound or an agent to a subject can be carried out using one of a variety of methods known to those skilled in the art. For example, a compound or an agent can be administered, intravenously, arterially, intradermally, intramuscularly, intraperitoneally, subcutaneously, ocularly, sublingually, orally (by ingestion), intranasally (by inhalation), intraspinally, intracerebrally, and transdermally (by absorption, e.g., through a skin duct). A compound or agent can also appropriately be introduced by rechargeable or biodegradable polymeric devices or other devices, e.g., patches and pumps, or formulations, which provide for the extended, slow or controlled release of the compound or agent.
Administering can also be performed, for example, once, a plurality of times, and/or over one or more extended periods.
Appropriate methods of administering a substance, a compound or an agent to a subject will also depend, for example, on the age and/or the physical condition of the subject and the chemical and biological properties of the compound or agent (e.g., solubility, digestibility, bioavailability, stability and toxicity). In some embodiments, a compound or an agent is administered orally, e.g., to a subject by ingestion. In some embodiments, the orally administered compound or agent is in an extended release or slow release formulation, or administered using a device for such slow or extended release.
As used herein, the phrase "conjoint administration" refers to any form of administration of two or more different therapeutic agents such that the second agent is administered while the previously administered therapeutic agent is still effective in the body (e.g., the two agents are simultaneously effective in the patient, which may include synergistic effects of the two agents). For example, the different therapeutic compounds can be administered either in the same formulation or in separate formulations, either concomitantly or sequentially. Thus, an individual who receives such treatment can benefit from a combined effect of different therapeutic agents.
A "therapeutically effective amount" or a "therapeutically effective dose" of a drug or agent is an amount of a drug or an agent that, when administered to a subject will have the intended therapeutic effect. The full therapeutic effect does not necessarily occur by
administration of one dose, and may occur only after administration of a series of doses. Thus, a therapeutically effective amount may be administered in one or more administrations. The precise effective amount needed for a subject will depend upon, for example, the subject's size, health and age, and the nature and extent of the condition being treated, such as cancer or MDS. The skilled worker can readily determine the effective amount for a given situation by routine experimentation.
The term "acyl" is art-recognized and refers to a group represented by the general formula hydrocarbylC(O)-, preferably alkylC(O)-.
The term "acylamino" is art-recognized and refers to an amino group substituted with an acyl group and may be represented, for example, by the formula hydrocarbylC(0)NH-.
The term "acyloxy" is art-recognized and refers to a group represented by the general formula hydrocarbylC(0)0-, preferably alkylC(0)0-.
The term "alkoxy" refers to an alkyl group having an oxygen attached thereto.
Representative alkoxy groups include methoxy, ethoxy, propoxy, tert-butoxy and the like.
The term "alkoxyalkyl" refers to an alkyl group substituted with an alkoxy group and may be represented by the general formula alkyl-O-alkyl.
The term "alkyl" refers to saturated aliphatic groups, including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl-substituted cycloalkyl groups, and cycloalkyl-substituted alkyl groups. In preferred embodiments, a straight chain or branched chain alkyl has 30 or fewer carbon atoms in its backbone (e.g., Ci-30 for straight chains, C3-30 for branched chains), and more preferably 20 or fewer.
Moreover, the term "alkyl" as used throughout the specification, examples, and claims is intended to include both unsubstituted and substituted alkyl groups, the latter of which refers to alkyl moieties having substituents replacing a hydrogen on one or more carbons of the hydrocarbon backbone, including haloalkyl groups such as trifluoromethyl and 2,2,2- trifluoroethyl, etc.
The term "Cx-y" or "Cx-Cy", when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups that contain from x to y carbons in the chain. Coalkyl indicates a hydrogen where the group is in a terminal position, a bond if internal. A Ci-6alkyl group, for example, contains from one to six carbon atoms in the chain.
The term "alkylamino", as used herein, refers to an amino group substituted with at least one alkyl group.
The term "alkylthio", as used herein, refers to a thiol group substituted with an alkyl group and may be represented by the general formula alkylS-.
The term "amide", as used herein, refers to a group
Figure imgf000023_0001
wherein R9 and R10 each independently represent a hydrogen or hydrocarbyl group, or R9 and R10 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
The terms "amine" and "amino" are art-recognized and refer to both unsubstituted and substituted amines and salts thereof, e.g., a moiety that can be represented by
Figure imgf000023_0002
wherein R9, R10, and R10' each independently represent a hydrogen or a hydrocarbyl group, or R9 and R10 taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure. The term "aminoalkyl", as used herein, refers to an alkyl group substituted with an amino group.
The term "aralkyl", as used herein, refers to an alkyl group substituted with an aryl group.
The term "aryl" as used herein include substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon. Preferably the ring is a 5- to 7-membered ring, more preferably a 6-membered ring. The term "aryl" also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
The term "carbamate" is art-recognized and refers to a group
Figure imgf000024_0001
wherein R9 and R10 independently represent hydrogen or a hydrocarbyl group.
The term "carbocyclylalkyl", as used herein, refers to an alkyl group substituted with a carbocycle group.
The terms "carbocycle", "carbocyclyl", and "carbocyclic", as used herein, refers to a non- aromatic saturated or unsaturated ring in which each atom of the ring is carbon. Preferably a carbocycle ring contains from 3 to 10 atoms, more preferably from 5 to 7 atoms.
The term "carbocyclylalkyl", as used herein, refers to an alkyl group substituted with a carbocycle group.
The term "carbonate" is art-recognized and refers to a group -OCO2-.
The term "carboxy", as used herein, refers to a group represented by the formula -CO2H.
The term "ester", as used herein, refers to a group -C(0)OR9 wherein R9 represents a hydrocarbyl group.
The term "ether", as used herein, refers to a hydrocarbyl group linked through an oxygen to another hydrocarbyl group. Accordingly, an ether substituent of a hydrocarbyl group may be hydrocarbyl-O-. Ethers may be either symmetrical or unsymmetrical. Examples of ethers include, but are not limited to, heterocycle-O-heterocycle and aryl-O-heterocycle. Ethers include "alkoxyalkyl" groups, which may be represented by the general formula alkyl-O-alkyl. The terms "halo" and "halogen" as used herein means halogen and includes chloro, fluoro, bromo, and iodo.
The terms "hetaralkyl" and "heteroaralkyl", as used herein, refers to an alkyl group substituted with a hetaryl group.
The terms "heteroaryl" and "hetaryl" include substituted or unsubstituted aromatic single ring structures, preferably 5- to 7-membered rings, more preferably 5- to 6-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. The terms "heteroaryl" and "hetaryl" also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heteroaromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, pyrazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
The term "heteroatom" as used herein means an atom of any element other than carbon or hydrogen. Preferred heteroatoms are nitrogen, oxygen, and sulfur.
The term "heterocyclylalkyl", as used herein, refers to an alkyl group substituted with a heterocycle group.
The terms "heterocyclyl", "heterocycle", and "heterocyclic" refer to substituted or unsubstituted non-aromatic ring structures, preferably 3- to 10-membered rings, more preferably 3- to 7-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. The terms "heterocyclyl" and "heterocyclic" also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heterocyclic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Heterocyclyl groups include, for example, piperidine, piperazine, pyrrolidine, morpholine, lactones, lactams, and the like.
The term "hydrocarbyl", as used herein, refers to a group that is bonded through a carbon atom that does not have a =0 or =S substituent, and typically has at least one carbon-hydrogen bond and a primarily carbon backbone, but may optionally include heteroatoms. Thus, groups like methyl, ethoxy ethyl, 2-pyridyl, and even trifluoromethyl are considered to be hydrocarbyl for the purposes of this application, but substituents such as acetyl (which has a =0 substituent on the linking carbon) and ethoxy (which is linked through oxygen, not carbon) are not.
Hydrocarbyl groups include, but are not limited to aryl, heteroaryl, carbocycle, heterocycle, alkyl, alkenyl, alkynyl, and combinations thereof.
The term "hydroxyalkyl", as used herein, refers to an alkyl group substituted with a hydroxy group.
The term "lower" when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups where there are ten or fewer atoms in the substituent, preferably six or fewer. A "lower alkyl", for example, refers to an alkyl group that contains ten or fewer carbon atoms, preferably six or fewer. In certain embodiments, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy substituents defined herein are respectively lower acyl, lower acyloxy, lower alkyl, lower alkenyl, lower alkynyl, or lower alkoxy, whether they appear alone or in combination with other substituents, such as in the recitations hydroxyalkyl and aralkyl (in which case, for example, the atoms within the aryl group are not counted when counting the carbon atoms in the alkyl substituent).
The terms "polycyclyl", "polycycle", and "polycyclic" refer to two or more rings (e.g., cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls) in which two or more atoms are common to two adjoining rings, e.g., the rings are "fused rings". Each of the rings of the polycycle can be substituted or unsubstituted. In certain embodiments, each ring of the polycycle contains from 3 to 10 atoms in the ring, preferably from 5 to 7.
The term "sulfate" is art-recognized and refers to the group -OSC H, or a
pharmaceutically acceptable salt thereof.
The term "sulfonamide" is art-recognized and refers to the group represented by the general formulae
Figure imgf000026_0001
wherein R9 and R10 independently represents hydrogen or hydrocarbyl.
The term "sulfoxide" is art-recognized and refers to the group-S(O)-.
The term "sulfonate" is art-recognized and refers to the group SC H, or a
pharmaceutically acceptable salt thereof.
The term "sulfone" is art-recognized and refers to the group -S(0)2-. The term "substituted" refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that "substitution" or "substituted with" includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. As used herein, the term "substituted" is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety. It will be understood by those skilled in the art that the moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate.
The term "thioalkyl", as used herein, refers to an alkyl group substituted with a thiol group.
The term "thioester", as used herein, refers to a group -C(0)SR9 or -SC(0)R9 wherein R9 represents a hydrocarbyl.
The term "thioether", as used herein, is equivalent to an ether, wherein the oxygen is replaced with a sulfur.
The term "urea" is art-recognized and may be represented by the general formula
R9 R9
wherein R9 and R10 independently represent hydrogen or a hydrocarbyl. The term "modulate" as used herein includes the inhibition or suppression of a function or activity (such as cell proliferation) as well as the enhancement of a function or activity.
The phrase "pharmaceutically acceptable" is art-recognized. In certain embodiments, the term includes compositions, excipients, adjuvants, polymers and other materials and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
"Pharmaceutically acceptable salt" or "salt" is used herein to refer to an acid addition salt or a basic addition salt which is suitable for or compatible with the treatment of patients.
The term "pharmaceutically acceptable acid addition salt" as used herein means any nontoxic organic or inorganic salt of any base compounds represented by Formula I. Illustrative inorganic acids which form suitable salts include hydrochloric, hydrobromic, sulfuric and phosphoric acids, as well as metal salts such as sodium monohydrogen orthophosphate and potassium hydrogen sulfate. Illustrative organic acids that form suitable salts include mono-, di-, and tricarboxylic acids such as glycolic, lactic, pyruvic, malonic, succinic, glutaric, fumaric, malic, tartaric, citric, ascorbic, maleic, benzoic, phenylacetic, cinnamic and salicylic acids, as well as sulfonic acids such as p-toluene sulfonic and methanesulfonic acids. Either the mono or di-acid salts can be formed, and such salts may exist in either a hydrated, solvated or
substantially anhydrous form. In general, the acid addition salts of compounds of Formula I are more soluble in water and various hydrophilic organic solvents, and generally demonstrate higher melting points in comparison to their free base forms. The selection of the appropriate salt will be known to one skilled in the art. Other non-pharmaceutically acceptable salts, e.g., oxalates, may be used, for example, in the isolation of compounds of Formula I for laboratory use, or for subsequent conversion to a pharmaceutically acceptable acid addition salt.
The term "pharmaceutically acceptable basic addition salt" as used herein means any non-toxic organic or inorganic base addition salt of any acid compounds represented by Formula I or any of their intermediates. Illustrative inorganic bases which form suitable salts include lithium, sodium, potassium, calcium, magnesium, or barium hydroxide. Illustrative organic bases which form suitable salts include aliphatic, alicyclic, or aromatic organic amines such as methylamine, trimethylamine and picoline or ammonia. The selection of the appropriate salt will be known to a person skilled in the art. Many of the compounds useful in the methods and compositions of this disclosure have at least one stereogenic center in their structure. This stereogenic center may be present in a R or a S configuration, said R and S notation is used in correspondence with the rules described in Pure Appl. Chem. (1976), 45, 11-30. The disclosure contemplates all stereoisomeric forms such as enantiomeric and diastereoisomeric forms of the compounds, salts, prodrugs or mixtures thereof (including all possible mixtures of stereoisomers). See, e.g., WO 01/062726.
Furthermore, certain compounds which contain alkenyl groups may exist as Z
(zusammen) or E (entgegen) isomers. In each instance, the disclosure includes both mixture and separate individual isomers.
Some of the compounds may also exist in tautomeric forms. Such forms, although not explicitly indicated in the formulae described herein, are intended to be included within the scope of the present disclosure.
"Prodrug" or "pharmaceutically acceptable prodrug" refers to a compound that is metabolized, for example hydrolyzed or oxidized, in the host after administration to form the compound of the present disclosure (e.g., compounds of formula I). Typical examples of prodrugs include compounds that have biologically labile or cleavable (protecting) groups on a functional moiety of the active compound. Prodrugs include compounds that can be oxidized, reduced, aminated, deaminated, hydroxylated, dehydroxylated, hydrolyzed, dehydrolyzed, alkylated, dealkylated, acylated, deacylated, phosphorylated, or dephosphorylated to produce the active compound. Examples of prodrugs using ester or phosphoramidate as biologically labile or cleavable (protecting) groups are disclosed in U.S. Patents 6,875,751, 7,585,851, and 7,964,580, the disclosures of which are incorporated herein by reference. The prodrugs of this disclosure are metabolized to produce a compound of Formula I. The present disclosure includes within its scope, prodrugs of the compounds described herein. Conventional procedures for the selection and preparation of suitable prodrugs are described, for example, in "Design of Prodrugs" Ed. H. Bundgaard, Elsevier, 1985.
The phrase "pharmaceutically acceptable carrier" as used herein means a
pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filter, diluent, excipient, solvent or encapsulating material useful for formulating a drug for medicinal or therapeutic use. The term "Log of solubility", "LogS" or "logS" as used herein is used in the art to quantify the aqueous solubility of a compound. The aqueous solubility of a compound significantly affects its absorption and distribution characteristics. A low solubility often goes along with a poor absorption. LogS value is a unit stripped logarithm (base 10) of the solubility measured in mol/liter.
EXAMPLES
The invention now being generally described, it will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention.
Example 1 : Identification of Let-7 modulators
A luciferase assay was conducted on screening compounds to determine their
effectiveness in activating Let-7 miRNA against Psi-let-7-transfected Huh7 cells, and Psi- check2-transfected cells (control) (figures 1A-1B, ID-IE, 2A). Let-7 activity was also confirmed via measuring a variety of Let-7 target genes by RT-PCR (Figures 1C, IF, 2B-2E). Change in Let-7 activity by disclosed compounds were confirmed in the RT-PCR (Figures 3B-3E, 4C) with a dose response (Figure 5C)
Generation of a Huh7 cell line stably expressing the let-7 activity reporter
let-7 activity can be precisely assayed using a luciferase-based method (PSI-Check2 let-7 8X, Fig 1 A). In short, the Renilla luciferase is flanked by 8 repeats of let-7 target sequence and its mRNA will be subject to a higher rate of degradation in the presence of a higher let-7 activity. The control Firefly luciferase was driven by a constitutive promoter (Fig 1A). A handful of breast cancer and hepatocarcinoma cell lines (MCF7, MCF15, Huh7 and Huh7.5.1) were anylyzed to assay the detectable let-7 activity. In Human Hepatocarcinoma (Huh), a high level of LIN28B expression was observed at both the RNA and protein level; and as a result, a low level of let-7 activity, as shown by let-7-luc luciferase assay. In addition, it was found that the Huh cell line expressed a number of let-7 targets that could be tightly regulated by changes in let-7 levels (Fig 1C).
To facilitate reproducible results in both screening and validation assays, a cell line with stable integration of the let-7 reporter construct was created. A Neomycin resistance cassette was cloned into the PSI-Check2 let-7-\ucif erase, and then the reporter plasmid was stably introduced into the Huh7.5.1 cell line and selected with G418 for 3 weeks (Fig IB). The stable cell line was subjected to dual-glo luciferase assay, where it displayed a stable luciferase unit per cell in both Firefly and Renilla (Fig ID). To demonstrate the dynamic range of detection in let-7 activity, this Huh7.5.1 let-7 luciferase reporter line (Huh7.5.1 L7L) was transfected with siRNA against LIN28B, as well as let-7 mimics (Fig ID). siRNA effectively reduced LIN28B expression by at least 90%. In response to the downregulation of LIN28B, mature microRNA levels rose about 2 to 3 fold for all let-7 family members. As a result, the let-7 activity was reduced by 25-50%, as assayed by dual-glo luciferase. In addition, transfection of mimics of let- 7s was used to determine how sensitive the reporter was to changes in let-7 levels (Fig IE and F). This demonstrated that strong induction of let-7 levels by direct transfection was able to effectively silence the reporter (Fig IE).
High Throughput Screening of Small Molecules
The initial screens with the let-7 reporter stably introduced into Huh cells generated significant numbers of false positives in both directions. As expected, many of the false positive appeared to target luciferase enzymes, and not let-7 activity. As an alternative method designed to minimize the identification of molecules that target luciferase, replicate wells were transiently transfected with a PSI-Check2 plasmid that either contained the let-7 seed sequence or a clean version that should not be regulated by let-7. The signal change in the screen was then quantified as a function of the effect on the luciferase without let-7 sites, and as a function of internal controls on each reporter consisting of alternate luciferase gene (firefly) driven by a constitutive promoter. As a result, it was possible to screen for molecules that affected let-7 activity directly, after controlling for both luciferase and transfection efficiency (Fig 1 A). The assay protocol was also validated based on its performance for high throughput screening (HTS) suitability. For the optimized HTS reporter screen a Z'-factor of 0.65 was derived which is indicative of a reliable assay activity.
Screening using expression of let-7 target genes
To identify candidate regulators of let-7 activity from the screen more directly, a tertiary screen was performed that measured levels of the let-7 target HMGA2. We chose this gene because it is expressed in several different isoforms, only one of which has more than one let-7 target site in its 3' UTR. By quantifying the relative expression of the HMGA2 isoform with many let-7 sites versus all HMGA2 isoforms, specific activation of let-7 activity could be identified without the use of an exogenous reporter. 60 candidates from the original screen were assayed in this way (Fig 2). With this screening approach, we identified compounds able to directly affect expression levels of the long form of HMGA2 (Fig 2B). This led to the identification of a compound we labeled 44. RT-PCR was used to test whether IMP3
(IGF2BP3), PLAG2, LIN28B or MYC were affected by treatment of HUH7 cells with 44 (Fig 2C). In Huh7 cells, 44 appeared to suppress the expression of HMGA2, N-MYC, and IMP2, while LIN28B and PLAG2 did not seem to change significantly (Fig 2C). The fact that 3 out of 5 let-7 targets were suppressed by 44 could suggest that let-7 activity is induced in these cells, and let-7 levels are altered depending on their endogenous expression levels. As let-7 miRNAs are highly expressed in Huh7 cells, endogenous changes of mature let-7miRNA levels are difficult to detect. Perhaps consistent with this notion, treatment of cells with 44 did not have a strong impact on the level of mature let-7s (Fig 2D).
To determine the general applicability of 44 to influence let-7 target expression, the effect of this compound on various Acute Myeloid Leukemia (AML) cell lines was measured, each with well-characterized expression levels of let-7 s and LIN28. Most AML cell lines do not express high levels of let-7 miRNA levels. Perhaps as a consequence, treatment of AML cells significantly upregulated mature let-7 levels in MOLM-13, THP-1 and HL60 cell lines.
Focusing on 44, dose curve, time course, and pulse-chase experiments were performed (Fig 3A-D). Varying concentrations of these compounds were applied to Huh7 cells and assayed by RT-PCR for the let-7 sensitive version of HMGA2. These dose curve experiments showed that 44 was effective at luM, and maximally effective at 5uM (Fig 3 A). To determine the time course for activity of 44, cells were treated for various times. RT-PCR for HMGA2 showed that 44 could suppress expression of this let-7 target gene in as few as 8 hours (Fig 3B). Finally, a pulse-chase of treatment was performed with 44 to determine if the effect on let-7 targets was permanent or instigated a feed forward program of suppression of let-7 targets. In fact, treating with 44 for 2 days followed by treatment withdrawal for 2 days completely reversed the effect of this compound on various let-7 target genes (Fig 3C), suggesting that this compound transiently regulated expression of let-7 targets. Treating a AML cell line with 44 also showed a dose- responsive effect on those let-7 targets that are expressed (Fig 3D). Compounds 61 and 62 were also identified as regulators of let-7 targets. Treatment of Huh cells with these compounds also suppressed levels of HMGA2 and NMYC without affecting LIN28 (Fig 4). SEA analysis predicts the top targets of compounds 44, 61, and 62 as
PDE inhibitors:
Figure imgf000033_0001
Example 2: Measurement of CREB activation
Phosphodiesterase 10A was identified as a potential target of 44, 61 and 62. The role of phosphodiesterase is to regulate levels of cyclic- AMP (cAMP)(Fig 4). Therefore, if 44 inhibits PDE10, one would expect an increase in cAMP levels leading to CREB activation. Huh cells were treated with 44 and 61 and then stained with an antibody that recognizes phosphorylated CREB, consistent with activation of cAMP signaling. Both 44 and 61 strongly induced levels of nuclear phosopho-CREB (Fig 5A). To measure the degree to which 44 could regulate gene expression in Huh cells, RNA-seq was carried out to identify which genes are changed in response to treatment with these compounds and whether let-7 targets are enriched amongst these gene expression changes (Fig 5B). A wide variety of genes appeared to be both induced and suppressed. The table below shows a list of genes up- and down regulated by at least 2 fold in response to treatment with 44:
Figure imgf000034_0001
CYR61 LSAMP PRSS23 ZN 165 CYP4F24P HOGA1 NGEF TLE6
DUSP10 MAK S 100A2 CYP4F3 INPPSF NIPSNAP38 TMEM191A
At the top of the list were genes related to CREB signaling, particularly induction of ATF3, C-FOS and FOSB, suggesting that 44 activates CREB (Fig 5). We also performed dose- response assays on cells treated with 44, 61 and 62. These compounds again appeared to silence HMGA2 in a dose dependent manner (Fig 5C), but also these compounds induced typical CREB target genes such as FOSB and CFOS in Huh7 cells and ATF3, FOSB and CFOS in HL60, MOLM13 and THP-1 cells (AML lines)(Fig 5D-E).
Example 3; Growth inhibition of cancer cells
The growth inhibitory effect of 44 on cancer cells was confirmed by counting the number of cells treated with disclosed compounds against DMSO (control) over a period of time (Figures 6A-6B). An ATP-luciferase cell survival assay was conducted on disclosed compounds to determine their dose-response properties in different cancer cells (Figure 6C). 44 appeared to dramatically slow the growth of Huh cells (Fig. 6A) and squamous cell carcinoma lines (Fig. 6B) at luM, the same dose used to effectively suppress let-7 targets. With a distinct cell growth assay, compound 44 showed significant toxicity towards several lung, liver and AML cancer cells lines with an IC50 of 0.1 μΜ (Fig 6C). These data are consistent with previous studies showing that PDE inhibition can be an effective mediator of growth rate in cancer cell lines.
Example 4: 44 inhibits UPR and PI3K signaling pathways
A small molecule, 44, has been identified that significantly upregulates let-7 microRNA levels in AML cell lines48. To measure the complete degree to which 44 could regulate gene expression in AML cells, RNAseq was carried out to identify which genes are changed in response to treatment with these compounds and whether let-7 targets are enriched amongst these genes. These studies found a panel of direct let-7 target genes more than 1.5-fold downregulated (HMGA1, IL6 and MYC) and confirmed suppression of these genes in 3 primary AML patient samples (FIG. 7B).
Moreover, the table below shows a list of direct let-7 genes down-regulated in AML Kasumi-1 cells by at least 1 fold:
Figure imgf000036_0001
NFKB 1 -1.232245039
NRAS -1.206793668
HOXA9 -1.205671617
CTPS2 -1.186950114
CRY2 -1.162883998
ABCA5 -1.151604937
MYC -1.129405664
E2F3 -1.084335093
CCND3 -1.079712163
Moreover, pathway analysis of Kasumi-1 cells treated with 44 predicted induced C/ΕΒΡε signaling and significant inhibition of the unfolded protein response (UPR) and PI3K pathway (FIG. 7A). In primary AML cell samples, experiments confirmed that compound 44 induced apoptosis through upregulation of the pro-apoptotic regulators CCAAT/enhancer binding protein homologue CHOP, BCL-2, BAX and BIM as well as inhibition of the heat shock proteins HSP40 and HSP90, all of which are major regulators of UPR (FIG. 7B). Overexpression of C/EBPs correlate with suppression of a wide variety of microRNAs, let-7 miRNAs included 16. Two C/EBP family members, CHOP and C/ΕΒΡε, were found to be significantly upregulated after AML cell treatment with 44. Subsequent experiments therefore tested if inhibition of C/ΕΒΡε and CHOP can upregulate let-7 microRNAs. Indeed, shRNA mediated silencing of CHOP and C/ΕΒΡε upregulated let-7 microRNAs in Kasumi-1 cells (FIG. 7C). Taken together, 44 inhibits UPR and PI3K signaling pathways leading to upregulation of let-7 microRNA levels, possibly through increased transcriptional activity of several C/EBP family members.
Phenotypically, treatment with 44 at 10 μΜ for 16h induces differentiation in Kasumi-1 cells leading to a significant decrease of CD34+CD38- expressing cells (FIG. 7D). To confirm that induction of differentiation and apoptosis is not mediated through cytotoxicity, cellular ATP levels were measured via GloTiter assay in HepG2 cells 12h after treatment with various doses of 44 and results were compared to the clinically approved demethylating agent 5-Azacitidine (5- Aza, 5 μΜ). Compound 44 was not toxic at dosing regimens of 5 μΜ and lower (FIG. 7E) and exhibited similar or better tolerability than 5-Aza.
Example 5; Effect of 44 in vivo in AML Xenograft models
Next, the effect of 44 in vivo in AML Xenograft models was determined. In a systemic MOLM-13 AML Xenograft model, daily intraperitoneal (IP) injections of 44 at lOmg/kg significantly prolonged survival of mice when compared to vehicle injected Xenografts (Fig. 8A). In a subcuataneous AML model of Kasumi-1 cells (core binding factor (CBF) leukemia-, CD34+CD38- enriched cell line with t(8;21)-Kit(q22;q22), stably overexpressing a Luciferase plasmid (Kasumi-1 Luc), two single intravenous injections of 44 decreased tumor proliferation as quantified by bioluminescence imaging and intensity dynamic analysis (BLI, Figure 8B, left) at the study end point 24 days post cell transplantation. Finally, 44 was prepared as a nanoparticle suspension with Casein to optimize solubility and delivery of 44. A single injection of 44 formulated with Casein nanoparticles (CasMA) significantly prolonged survival of mice compared to control/PBS injected mice (Fig. 8c). These results suggest that 44 inhibit AML proliferation in vivo and optimized solubility and delivery of 44 will enhance its anti-tumor activity.
Example 6; Inhibition of leukemic stem cell proliferation in vivo
In order to determine if 44 can inhibit leukemic stem cell proliferation in vivo, primary AML cells from three different donors were treated with 10 μΜ 44 for 16h and the progeny were transplanted into NSG mice to assess leukemic stem cell engraftment over time FIG. 9A). Mice transplanted with 44 treated primary AML cells showed 20 fold less engraftment of human CD45+ cells and human CD45+CD33+CD34+CD38-CD45RA+ leukemic stem cells compared to mice transplanted with control treated AML cells (FIGs. 9B-9C). These results suggest that 44 inhibits proliferation of LSCs and abrogate human AML tumor burden in vivo.
References
1. Tenen DG, Hromas R, Licht JD, Zhang DE. Transcription factors, normal myeloid development, and leukemia. Blood. 1997;90(2):489-519.
2. Ramji DP, Foka P. CCAAT/enhancer-binding proteins: structure, function and regulation. Biochem J. 2002;365(Pt 3):561-575.
3. Verbeek W, Lekstrom-Himes J, Park DJ, et al. Myeloid transcription factor C/EBPepsilon is involved in the positive regulation of lactoferrin gene expression in neutrophils. Blood. 1999;94(9):3141-3150.
4. Yamada T, Tsuchiya T, Osada S, Nishihara T, Imagawa M. CCAAT/enhancer- binding protein delta gene expression is mediated by autoregulation through downstream binding sites. Biochem Biophys Res Commun. 1998;242(1): 88-92. 5. Wang D, D'Costa J, Civin CI, Friedman AD. C/EBPalpha directs monocytic commitment of primary myeloid progenitors. Blood. 2006;108(4): 1223-1229.
6. Friedman AD. Transcriptional regulation of granulocyte and monocyte development. Oncogene. 2002;21(21):3377-3390.
7. Chih DY, Chumakov AM, Park DJ, Silla AG, Koeffler HP. Modulation of mRNA expression of a novel human myeloid-selective CCAAT/enhancer binding protein gene (C/EBP epsilon). Blood. 1997;90(8):2987-2994.
8. Pabst T, Mueller BU, Harakawa N, et al. AMLl-ETO downregulates the granulocytic differentiation factor C/EBPalpha in t(8;21) myeloid leukemia. Nat Med.
2001;7(4):444-451.
9. Radomska HS, Basseres DS, Zheng R, et al. Block of C/EBP alpha function by phosphorylation in acute myeloid leukemia with FLT3 activating mutations. J Exp Med.
2006;203(2):371-381.
10. Hackanson B, Bennett KL, Brena RM, et al. Epigenetic modification of
CCAAT/enhancer binding protein alpha expression in acute myeloid leukemia. Cancer Res. 2008;68(9):3142-3151.
11. Ambros V. microRNAs: tiny regulators with great potential. Cell. 2001 ;107:823-
826.
12. Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116:281-297.
13. Ambros V. The functions of animal microRNAs. Nature. 2004;431 :350-355.
14. Calin GA, Croce CM. MicroRNA signatures in human cancers. Nature reviews Cancer. 2006;6:857-866.
15. Calin GA, Croce CM. MicroRNA-cancer connection: the beginning of a new tale. Cancer research. 2006;66:7390-7394.
16. Jongen-Lavrencic M, Sun SM, Dijkstra MK, Valk PJM, Lowenberg B.
MicroRNA expression profiling in relation to the genetic heterogeneity of acute myeloid leukemia. Blood. 2008;111 :5078-5085.
17. Nair VS, Maeda LS, Ioannidis JPA. Clinical outcome prediction by microRNAs in human cancer: a systematic review. Journal of the National Cancer Institute. 2012;104:528- 540. 18. Dixon-Mclver A, East P, Mein CA, et al. Distinctive patterns of microRNA expression associated with karyotype in acute myeloid leukaemia. PloS one. 2008;3:e2141.
19. Roush S, Slack FJ. The let-7 family of microRNAs. Trends in cell biology.
2008;18:505-516.
20. Mitxelena J, Apraiz A, Vallejo-Rodriguez J, Malumbres M, Zubiaga AM. E2F7 regulates transcription and maturation of multiple microRNAs to restrain cell proliferation. Nucleic Acids Res. 2016.
21. Chang TC, Yu D, Lee YS, et al. Widespread microRNA repression by Myc contributes to tumorigenesis. Nat Genet. 2008;40(l):43-50.
22. Wang Z, Lin S, Li JJ, et al. MYC protein inhibits transcription of the microRNA cluster MC-let-7a-l~let-7d via noncanonical E-box. J Biol Chem. 2011;286(46):39703-39714.
23. Mitra D, Das PM, Huynh FC, Jones FE. Jumonji/ARIDl B (J ARID IB) protein promotes breast tumor cell cycle progression through epigenetic repression of microRNA let-7e. J Biol Chem. 2011 ;286(47):40531-40535.
24. Lin Y, Zhao J, Hu X, Wang L, Liang L, Chen W. Transcription factor
CCAAT/enhancer binding protein alpha up-regulates microRNA let-7a-l in lung cancer cells by direct binding. Cancer Cell Int. 2016;16: 17.
25. Ayyar K, Reddy KVR. Transcription factor CCAAT/enhancer-binding protein- beta upregulates microRNA, let-7f-l in human endocervical cells. Am J Reprod Immunol.
2017;78(6).
26. Viswanathan SR, Daley GQ, Gregory RI. Selective blockade of microRNA processing by Lin28. Science (New York, NY). 2008;320:97-100.
27. Newman MA, Thomson JM, Hammond SM. Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing. RNA (New York, NY). 2008;14: 1539- 1549.
28. Heo I, Joo C, Cho J, Ha M, Han J, Kim VN. Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA. Molecular cell. 2008;32:276-284.
29. Piskounova E, Viswanathan SR, Janas M, et al. Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28. The Journal of biological chemistry. 2008;283 :21310-21314. 30. Rybak A, Fuchs H, Smirnova L, et al. A feedback loop comprising lin-28 and let- 7 controls pre-let-7 maturation during neural stem-cell commitment. Nature cell biology.
2008;10:987-993.
31. Viswanathan SR, Powers JT, Einhorn W, et al. Lin28 promotes transformation and is associated with advanced human malignancies. Nature genetics. 2009;41 :843-848.
32. Iliopoulos D, Hirsch HA, Struhl K. An epigenetic switch involving NF-kappaB, Lin28, Let-7 MicroRNA, and IL6 links inflammation to cell transformation. Cell. 2009; 139:693 - 706.
33. Albino D, Civenni G, Dallavalle C, et al. Activation of the Lin28/let-7 Axis by Loss of ESE3/EHF Promotes a Tumorigenic and Stem-like Phenotype in Prostate Cancer.
Cancer research. 2016;76:3629-3643.
34. King CE, Cuatrecasas M, Castells A, Sepulveda AR, Lee J-S, Rustgi AK.
LIN28B promotes colon cancer progression and metastasis. Cancer research. 2011;71 :4260- 4268.
35. Zhang WC, Shyh-Chang N, Yang H, et al. Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis. Cell. 2012;148:259-272.
36. Kong D, Banerjee S, Ahmad A, et al. Epithelial to mesenchymal transition is mechanistically linked with stem cell signatures in prostate cancer cells. PloS one.
2010;5:el2445.
37. Molenaar JJ, Domingo-Fernandez R, Ebus ME, et al. LIN28B induces neuroblastoma and enhances MYCN levels via let-7 suppression. Nature genetics.
2012;44: 1199-1206.
38. Shyh-Chang N, Daley GQ. Lin28: primal regulator of growth and metabolism in stem cells. Cell stem cell. 2013;12:395-406.
39. Shell S, Park S-M, Radjabi AR, et al. Let-7 expression defines two differentiation stages of cancer. Proceedings of the National Academy of Sciences of the United States of America. 2007;104: 11400-11405.
40. Feng C, Neumeister V, Ma W, et al. Lin28 regulates HER2 and promotes malignancy through multiple mechanisms. Cell cycle (Georgetown, Tex). 2012;11 :2486-2494. 41. Zhou J, Chan Z-L, Bi C, et al. LIN28B Activation by PRL-3 Promotes
Leukemogenesis and a Stem Cell-like Transcriptional Program in AML. Molecular cancer research : MCR. 2017;15:294-303.
42. Yan BX, Ma JX, Zhang J, et al. PSP94 contributes to chemoresistance and its peptide derivative PCK3145 represses tumor growth in ovarian cancer. Oncogene.
2014;33(45):5288-5294.
43. Wang T, Han P, He Y, et al. Lin28A enhances chemosensitivity of colon cancer cells to 5-FU by promoting apoptosis in a let-7 independent manner. Tumour Biol.
2016;37(6):7657-7665.
44. Teng R, Hu Y, Zhou J, et al. Overexpression of Lin28 Decreases the
Chemosensitivity of Gastric Cancer Cells to Oxaliplatin, Paclitaxel, Doxorubicin, and
Fluorouracil in Part via microRNA-107. PLoS One. 2015;10(12):e0143716.
45. Chaudhry MA, Sachdeva H, Omaruddin RA. Radiation-induced micro-RNA modulation in glioblastoma cells differing in DNA-repair pathways. DNA Cell Biol.
2010;29(9):553-561.
46. Yang X, Cai H, Liang Y, et al. Inhibition of c-Myc by let-7b mimic reverses mutidrug resistance in gastric cancer cells. Oncol Rep. 2015;33(4): 1723-1730.
47. Boyerinas B, Park SM, Murmann AE, et al. Let-7 modulates acquired resistance of ovarian cancer to Taxanes via IMP- 1 -mediated stabilization of multidrug resistance 1. IntJ Cancer. 2012;130(8): 1787-1797.
48. Cinkornpumin J, Roos M, Nguyen L, et al. A small molecule screen to identify regulators of let-7 targets. Sci Rep. 2017;7(1): 15973.
INCORPORATION BY REFERENCE
All publications and patents mentioned herein are hereby incorporated by reference in their entirety as if each individual publication or patent was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control. EQUIVALENTS
While specific embodiments of the subject invention have been discussed, the above specification is illustrative and not restrictive. Many variations of the invention will become apparent to those skilled in the art upon review of this specification and the claims below. The full scope of the invention should be determined by reference to the claims, along with their full scope of equivalents, and the specification, along with such variations.

Claims

We claim:
A pharmaceutical composition com rising a compound of formula I:
Figure imgf000044_0001
wherein R is substituted or unsubstituted phenyl;
or a pharmaceutically acceptable salt thereof;
and wherein the pharmaceutical composition further comprises a pharmaceutically acceptable excipient.
2. The pharmaceutical composition of claim 1, wherein R1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy.
3. The pharmaceutical composition of claim 1, wherein the compound is selected from the following compounds:
Figure imgf000044_0002
or a pharmaceutically acceptable salt thereof.
4. A method of increasing let-7 micro RNA levels in a patient, comprising administering an effective amount a compound of formula I:
Figure imgf000045_0001
wherein R is substituted or unsubstituted phenyl;
or a pharmaceutically acceptable salt thereof.
5. The method of claim 4, wherein R1 is phenyl substituted with 1, 2, 3, or 4 lower alkoxy groups, such as methoxy or ethoxy.
6. The method of claim 5, wherein the compound is selected from the following compounds:
Figure imgf000045_0002
or a pharmaceutically acceptable salt thereof.
7. The method of any one of claims 4-6, wherein the patient has a cancer.
8. The method of claim 7, wherein the cancer is acute myeloid leukemia, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm's tumor.
9. The method of claim 8, wherein the cancer is liver cancer, skin cancer, such as squamous cell carcinoma, lung cancer, or acute myeloid leukemia.
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Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014207213A1 (en) * 2013-06-28 2014-12-31 Medizinische Universität Innsbruck Novel inhibitors of protein kinase c epsilon signaling
US20150140071A1 (en) * 2013-11-12 2015-05-21 Ayyappan K. Rajasekaran Kinase inhibitors

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014207213A1 (en) * 2013-06-28 2014-12-31 Medizinische Universität Innsbruck Novel inhibitors of protein kinase c epsilon signaling
US20150140071A1 (en) * 2013-11-12 2015-05-21 Ayyappan K. Rajasekaran Kinase inhibitors

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
CINKORNPUMIN, J. ET AL.: "A small molecule screen to identify regulators of let-7 targets", SCIENTIFIC REPORTS, vol. 7, no. 1, 21 November 2017 (2017-11-21), pages 1 - 10, XP055585690, Retrieved from the Internet <URL:https://www. nature .com/articles/s 41598-017 -16258-9> *
DATABASE PubChem BioAssay 21 December 2007 (2007-12-21), "Modulators of the EP 2 prostaglandin E2 receptor - Primary Screening", XP055395475, retrieved from https://pubchem.ncbi.nlm.nih.gov/ bioassay/940 Database accession no. AID 940 *
DATABASE PubChem National Center for Biotechnology Information; 8 July 2010 (2010-07-08), "NOVARTIS: Inhibition of Plasmodium falciparum 3D7 (drug-susceptible) proliferation in erythrocyte-based infection assay", XP055585716, Database accession no. 449703 *
LI, Y.: "Up-regulation of miR-200 and let-7 by natural agents leads to the reversal of epithelial- to-mesenchymal transition in gemcitabine-resistant pancreatic cancer cells", CANCER RESEARCH, vol. 69, no. 16, 15 August 2009 (2009-08-15), pages 6704 - 6712, XP055585705, Retrieved from the Internet <URL:http://cancerres.aacrjoumals.orl content/canres/69 /16/6 704.full.pdf> *
ZIPETO, M. A. ET AL.: "ADAR1 activation drives leukemia stem cell self-renewal by impairing Let-7 biogenesis", CELL STEM CELL, vol. 19, no. 2, 4 August 2016 (2016-08-04), pages 177 - 191, XP029675872, Retrieved from the Internet <URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975616> DOI: doi:10.1016/j.stem.2016.05.004 *

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